Query 012994
Match_columns 452
No_of_seqs 833 out of 3149
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0268 Sof1-like rRNA process 100.0 1.9E-78 4.1E-83 489.8 29.8 433 1-452 1-433 (433)
2 KOG0271 Notchless-like WD40 re 100.0 1.6E-52 3.5E-57 341.8 27.4 318 58-407 107-467 (480)
3 KOG0271 Notchless-like WD40 re 100.0 1.5E-46 3.2E-51 307.0 21.6 313 31-360 122-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2E-45 4.4E-50 304.0 24.0 282 62-360 171-458 (459)
5 KOG0286 G-protein beta subunit 100.0 3.3E-42 7.1E-47 271.9 31.2 293 59-360 48-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.8E-44 1.2E-48 295.4 16.0 272 32-317 183-458 (459)
7 KOG0279 G protein beta subunit 100.0 1.1E-40 2.4E-45 261.7 30.4 290 57-362 6-313 (315)
8 KOG0315 G-protein beta subunit 100.0 2.8E-40 6.1E-45 255.2 28.8 281 80-375 11-301 (311)
9 KOG0318 WD40 repeat stress pro 100.0 8.1E-40 1.8E-44 278.2 32.4 316 58-401 182-583 (603)
10 KOG0265 U5 snRNP-specific prot 100.0 2E-40 4.3E-45 262.9 19.9 289 57-418 38-334 (338)
11 KOG0282 mRNA splicing factor [ 100.0 1.4E-40 3E-45 280.2 19.4 291 53-360 201-503 (503)
12 KOG0273 Beta-transducin family 100.0 1.5E-38 3.3E-43 266.9 27.8 318 27-362 181-523 (524)
13 KOG0263 Transcription initiati 100.0 3.5E-39 7.6E-44 287.7 23.5 253 57-367 369-654 (707)
14 KOG0296 Angio-associated migra 100.0 9.1E-38 2E-42 254.2 28.9 288 57-362 55-398 (399)
15 KOG0284 Polyadenylation factor 100.0 1.1E-39 2.5E-44 268.9 18.0 282 65-362 95-380 (464)
16 KOG0319 WD40-repeat-containing 100.0 2.8E-38 6E-43 279.4 26.3 347 31-381 69-596 (775)
17 KOG0291 WD40-repeat-containing 100.0 2.4E-37 5.1E-42 274.1 31.8 308 45-367 329-714 (893)
18 KOG0285 Pleiotropic regulator 100.0 8.1E-38 1.8E-42 253.8 26.0 289 56-362 141-439 (460)
19 KOG0295 WD40 repeat-containing 100.0 4.6E-38 1E-42 255.8 22.9 291 56-361 98-405 (406)
20 KOG0286 G-protein beta subunit 100.0 6.3E-37 1.4E-41 242.2 28.3 270 102-403 48-327 (343)
21 cd00200 WD40 WD40 domain, foun 100.0 4.2E-36 9.2E-41 263.8 36.1 285 59-360 2-289 (289)
22 KOG0279 G protein beta subunit 100.0 1E-36 2.2E-41 239.4 25.0 249 54-319 51-313 (315)
23 KOG0273 Beta-transducin family 100.0 2.2E-36 4.7E-41 254.0 27.0 308 60-404 173-506 (524)
24 KOG0315 G-protein beta subunit 100.0 5.7E-36 1.2E-40 231.4 26.8 280 43-340 17-308 (311)
25 KOG0316 Conserved WD40 repeat- 100.0 7.2E-37 1.6E-41 234.5 21.1 277 58-410 9-289 (307)
26 KOG0291 WD40-repeat-containing 100.0 2.6E-35 5.6E-40 261.2 31.1 298 64-378 263-566 (893)
27 KOG0278 Serine/threonine kinas 100.0 1.2E-36 2.5E-41 235.4 19.3 289 61-368 9-303 (334)
28 KOG0293 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 246.4 24.4 289 58-363 216-514 (519)
29 KOG0645 WD40 repeat protein [G 100.0 9.9E-35 2.1E-39 227.4 28.8 286 57-362 5-311 (312)
30 KOG0284 Polyadenylation factor 100.0 1.6E-37 3.5E-42 256.3 12.8 272 33-319 105-380 (464)
31 KOG0306 WD40-repeat-containing 100.0 8.2E-36 1.8E-40 264.2 23.7 339 44-404 85-647 (888)
32 KOG0277 Peroxisomal targeting 100.0 1.2E-35 2.5E-40 230.4 19.6 245 65-361 59-308 (311)
33 KOG0318 WD40 repeat stress pro 100.0 3.4E-34 7.3E-39 244.2 29.4 326 30-362 196-602 (603)
34 KOG0266 WD40 repeat-containing 100.0 2E-34 4.3E-39 264.3 30.3 289 59-362 151-454 (456)
35 PLN00181 protein SPA1-RELATED; 100.0 1.6E-33 3.5E-38 277.7 37.6 284 61-361 478-792 (793)
36 KOG0263 Transcription initiati 100.0 5E-35 1.1E-39 261.3 23.8 215 49-320 434-650 (707)
37 KOG0313 Microtubule binding pr 100.0 6.3E-34 1.4E-38 233.0 25.7 281 65-362 104-418 (423)
38 KOG0643 Translation initiation 100.0 3E-33 6.4E-38 218.7 26.7 285 61-363 5-318 (327)
39 KOG0281 Beta-TrCP (transducin 100.0 1.3E-35 2.8E-40 240.3 12.1 256 45-366 216-481 (499)
40 KOG0276 Vesicle coat complex C 100.0 3.9E-33 8.4E-38 242.5 28.0 297 58-370 5-306 (794)
41 KOG1407 WD40 repeat protein [F 100.0 5.3E-34 1.2E-38 222.1 20.1 277 60-412 14-293 (313)
42 KOG0275 Conserved WD40 repeat- 100.0 1.8E-34 3.9E-39 231.8 17.3 291 54-360 200-507 (508)
43 KOG0973 Histone transcription 100.0 9.5E-33 2.1E-37 255.3 28.5 309 65-376 12-369 (942)
44 KOG0283 WD40 repeat-containing 100.0 1.8E-33 4E-38 253.4 22.5 251 58-365 258-579 (712)
45 KOG0265 U5 snRNP-specific prot 100.0 3.8E-33 8.3E-38 221.6 19.6 281 28-359 51-335 (338)
46 KOG0295 WD40 repeat-containing 100.0 9.3E-34 2E-38 230.8 16.1 272 32-318 116-405 (406)
47 KOG0285 Pleiotropic regulator 100.0 1.2E-32 2.6E-37 223.9 20.7 279 102-407 144-425 (460)
48 PLN00181 protein SPA1-RELATED; 100.0 1.7E-31 3.7E-36 263.5 33.3 309 88-407 457-779 (793)
49 KOG0281 Beta-TrCP (transducin 100.0 2.1E-33 4.7E-38 227.5 16.2 269 28-367 156-433 (499)
50 KOG0306 WD40-repeat-containing 100.0 7E-32 1.5E-36 239.5 26.9 289 45-381 393-683 (888)
51 KOG0319 WD40-repeat-containing 100.0 7.2E-33 1.6E-37 245.3 19.2 285 36-370 336-627 (775)
52 KOG0288 WD40 repeat protein Ti 100.0 6.8E-33 1.5E-37 229.4 16.6 288 55-360 164-459 (459)
53 KOG0310 Conserved WD40 repeat- 100.0 9.7E-32 2.1E-36 227.3 23.8 297 49-365 12-312 (487)
54 KOG0282 mRNA splicing factor [ 100.0 4.3E-33 9.3E-38 235.1 15.0 282 100-411 205-494 (503)
55 KOG0266 WD40 repeat-containing 100.0 1.3E-31 2.7E-36 245.9 25.8 274 31-319 166-454 (456)
56 KOG0772 Uncharacterized conser 100.0 2.6E-32 5.6E-37 232.2 19.0 298 55-411 156-477 (641)
57 KOG0278 Serine/threonine kinas 100.0 3.2E-33 6.8E-38 216.5 11.7 263 45-324 38-302 (334)
58 KOG0292 Vesicle coat complex C 100.0 2.3E-31 5E-36 240.3 24.9 287 60-363 3-322 (1202)
59 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-30 1.2E-34 205.6 29.9 275 60-406 8-290 (311)
60 KOG0296 Angio-associated migra 100.0 1.6E-31 3.5E-36 217.9 20.5 275 29-319 69-398 (399)
61 KOG0294 WD40 repeat-containing 100.0 7.7E-31 1.7E-35 210.0 23.6 252 59-372 36-296 (362)
62 PTZ00421 coronin; Provisional 100.0 2.2E-30 4.7E-35 236.4 29.6 230 61-344 70-315 (493)
63 KOG0264 Nucleosome remodeling 100.0 3.8E-31 8.2E-36 222.0 21.7 255 63-362 121-404 (422)
64 KOG0640 mRNA cleavage stimulat 100.0 3.7E-31 8.1E-36 211.4 20.0 290 60-362 106-426 (430)
65 KOG0645 WD40 repeat protein [G 100.0 2.4E-30 5.3E-35 202.8 24.1 276 27-319 17-311 (312)
66 KOG0316 Conserved WD40 repeat- 100.0 7.4E-31 1.6E-35 201.6 20.5 266 39-362 32-299 (307)
67 KOG0305 Anaphase promoting com 100.0 5.4E-31 1.2E-35 231.4 19.8 260 47-321 198-463 (484)
68 KOG1539 WD repeat protein [Gen 100.0 1.4E-29 3.1E-34 227.5 28.9 313 44-362 180-648 (910)
69 KOG0274 Cdc4 and related F-box 100.0 5.8E-30 1.3E-34 233.7 27.1 303 42-370 183-490 (537)
70 PTZ00421 coronin; Provisional 100.0 3.5E-29 7.5E-34 228.6 31.9 257 65-369 19-297 (493)
71 cd00200 WD40 WD40 domain, foun 100.0 4.8E-30 1E-34 225.2 25.2 270 32-317 17-289 (289)
72 KOG0300 WD40 repeat-containing 100.0 4.5E-30 9.8E-35 206.0 22.0 315 57-404 139-457 (481)
73 KOG0293 WD40 repeat-containing 100.0 1.8E-30 3.9E-35 215.1 20.2 285 101-415 216-506 (519)
74 KOG0641 WD40 repeat protein [G 100.0 3.2E-28 7E-33 186.2 30.6 285 65-362 31-349 (350)
75 KOG1407 WD40 repeat protein [F 100.0 1.4E-29 3E-34 197.6 22.1 263 40-362 36-311 (313)
76 KOG0643 Translation initiation 100.0 1.4E-29 2.9E-34 198.3 21.9 270 42-320 28-318 (327)
77 PTZ00420 coronin; Provisional 100.0 1.7E-28 3.8E-33 224.8 32.7 235 85-365 50-296 (568)
78 PTZ00420 coronin; Provisional 100.0 7.3E-29 1.6E-33 227.3 30.0 247 44-345 52-319 (568)
79 KOG0305 Anaphase promoting com 100.0 7.5E-29 1.6E-33 218.0 28.4 274 71-364 182-463 (484)
80 KOG0277 Peroxisomal targeting 100.0 1.5E-29 3.2E-34 196.6 20.7 274 70-411 12-298 (311)
81 KOG0647 mRNA export protein (c 100.0 1E-28 2.2E-33 196.7 25.1 268 64-350 25-311 (347)
82 KOG0299 U3 snoRNP-associated p 100.0 8.5E-29 1.8E-33 208.1 24.8 286 59-360 135-454 (479)
83 KOG0276 Vesicle coat complex C 100.0 3.3E-29 7.1E-34 218.2 22.5 261 103-378 7-273 (794)
84 KOG1036 Mitotic spindle checkp 100.0 8.8E-28 1.9E-32 192.1 26.9 266 65-352 12-294 (323)
85 KOG4328 WD40 protein [Function 100.0 2E-28 4.4E-33 205.7 23.0 294 59-363 179-496 (498)
86 KOG0292 Vesicle coat complex C 100.0 7.8E-29 1.7E-33 224.1 21.5 256 104-373 4-291 (1202)
87 KOG2055 WD40 repeat protein [G 100.0 8.6E-28 1.9E-32 202.1 25.6 285 65-362 212-512 (514)
88 KOG0288 WD40 repeat protein Ti 100.0 4.8E-29 1E-33 206.7 17.3 264 34-316 185-458 (459)
89 KOG0289 mRNA splicing factor [ 100.0 6.3E-28 1.4E-32 201.4 23.9 253 50-318 245-505 (506)
90 KOG0308 Conserved WD40 repeat- 100.0 1.1E-28 2.3E-33 216.0 19.9 321 44-371 45-402 (735)
91 KOG1332 Vesicle coat complex C 100.0 2.6E-28 5.6E-33 188.7 19.5 250 62-362 7-286 (299)
92 KOG0310 Conserved WD40 repeat- 100.0 2.2E-28 4.7E-33 207.2 20.6 266 109-407 26-295 (487)
93 KOG0289 mRNA splicing factor [ 100.0 2E-27 4.3E-32 198.4 25.9 280 66-361 219-505 (506)
94 KOG0313 Microtubule binding pr 100.0 9.3E-28 2E-32 197.1 22.8 266 49-319 128-418 (423)
95 KOG0299 U3 snoRNP-associated p 100.0 4.6E-28 1E-32 203.7 21.4 287 102-409 135-443 (479)
96 KOG0646 WD40 repeat protein [G 100.0 2.4E-28 5.2E-33 205.8 19.8 234 65-344 80-331 (476)
97 KOG0639 Transducin-like enhanc 100.0 2.7E-28 5.8E-33 207.3 20.0 280 64-361 417-703 (705)
98 KOG0274 Cdc4 and related F-box 100.0 1.6E-27 3.4E-32 217.9 25.0 270 47-340 229-503 (537)
99 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.6E-26 1E-30 201.5 33.7 274 80-371 2-288 (300)
100 KOG1274 WD40 repeat protein [G 100.0 1.8E-26 4E-31 209.9 29.3 275 63-359 10-297 (933)
101 KOG0650 WD40 repeat nucleolar 100.0 3.5E-27 7.6E-32 204.7 23.5 305 50-360 384-733 (733)
102 KOG1273 WD40 repeat protein [G 100.0 2.6E-26 5.7E-31 184.2 26.3 288 69-373 26-333 (405)
103 KOG4283 Transcription-coupled 100.0 2.1E-26 4.5E-31 183.1 24.7 221 60-323 37-280 (397)
104 KOG2096 WD40 repeat protein [G 100.0 5E-26 1.1E-30 182.9 26.5 295 59-361 79-401 (420)
105 KOG1539 WD repeat protein [Gen 100.0 1.3E-25 2.7E-30 202.3 31.6 290 66-370 159-614 (910)
106 KOG0283 WD40 repeat-containing 100.0 4.2E-27 9.1E-32 212.7 22.0 263 102-371 259-541 (712)
107 KOG0308 Conserved WD40 repeat- 100.0 1.1E-27 2.4E-32 209.6 17.7 247 65-364 20-287 (735)
108 KOG0640 mRNA cleavage stimulat 100.0 2.2E-27 4.7E-32 190.0 17.1 252 56-318 162-425 (430)
109 KOG0647 mRNA export protein (c 100.0 2.1E-26 4.6E-31 183.6 22.3 251 107-371 25-290 (347)
110 KOG1408 WD40 repeat protein [F 100.0 5.8E-26 1.3E-30 201.2 27.3 323 68-408 326-700 (1080)
111 KOG1446 Histone H3 (Lys4) meth 100.0 4.5E-26 9.8E-31 183.3 24.1 276 31-364 21-305 (311)
112 KOG0275 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 188.1 19.3 277 107-407 211-495 (508)
113 KOG0270 WD40 repeat-containing 100.0 9.8E-27 2.1E-31 194.9 19.6 236 80-367 193-454 (463)
114 KOG2106 Uncharacterized conser 100.0 4.6E-25 9.9E-30 187.9 29.8 279 67-367 247-526 (626)
115 KOG0269 WD40 repeat-containing 100.0 6.6E-27 1.4E-31 208.8 18.1 280 66-413 39-331 (839)
116 KOG2445 Nuclear pore complex c 99.9 1.9E-25 4.1E-30 178.7 24.2 255 63-362 10-318 (361)
117 KOG1063 RNA polymerase II elon 99.9 9.4E-26 2E-30 199.1 23.7 323 58-403 183-676 (764)
118 KOG0646 WD40 repeat protein [G 99.9 6.1E-26 1.3E-30 191.4 21.2 270 85-371 13-316 (476)
119 KOG0301 Phospholipase A2-activ 99.9 3.6E-25 7.7E-30 195.5 26.3 279 57-364 5-290 (745)
120 KOG0264 Nucleosome remodeling 99.9 4.8E-26 1E-30 191.5 19.6 210 61-320 172-405 (422)
121 KOG0300 WD40 repeat-containing 99.9 2.2E-26 4.9E-31 184.9 16.8 270 38-364 162-478 (481)
122 KOG0269 WD40 repeat-containing 99.9 1.7E-26 3.6E-31 206.3 16.1 241 68-321 89-342 (839)
123 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.6E-24 7.9E-29 189.4 31.2 274 48-342 13-300 (300)
124 KOG0973 Histone transcription 99.9 4E-25 8.8E-30 205.1 24.4 259 50-322 53-358 (942)
125 KOG0294 WD40 repeat-containing 99.9 3.8E-25 8.3E-30 177.5 20.1 225 38-321 55-283 (362)
126 KOG0321 WD40 repeat-containing 99.9 3.4E-25 7.4E-30 193.8 20.3 270 60-367 94-396 (720)
127 KOG0302 Ribosome Assembly prot 99.9 1.2E-24 2.7E-29 178.7 21.2 248 61-360 146-436 (440)
128 KOG1036 Mitotic spindle checkp 99.9 4.4E-24 9.5E-29 171.1 23.7 246 108-371 12-271 (323)
129 KOG0772 Uncharacterized conser 99.9 1.9E-24 4E-29 184.7 21.5 282 42-373 185-502 (641)
130 KOG4378 Nuclear protein COP1 [ 99.9 1.9E-24 4.1E-29 183.8 20.6 285 89-403 12-305 (673)
131 KOG1188 WD40 repeat protein [G 99.9 3.4E-24 7.4E-29 174.0 20.5 273 80-362 41-346 (376)
132 KOG0307 Vesicle coat complex C 99.9 1.9E-25 4.1E-30 208.3 15.0 249 66-365 64-330 (1049)
133 KOG0268 Sof1-like rRNA process 99.9 2.1E-25 4.5E-30 182.3 13.4 248 102-369 59-309 (433)
134 KOG4283 Transcription-coupled 99.9 1.9E-24 4.1E-29 172.0 16.7 223 106-366 40-280 (397)
135 KOG0267 Microtubule severing p 99.9 1.1E-25 2.4E-30 199.6 10.3 236 60-353 22-259 (825)
136 KOG2106 Uncharacterized conser 99.9 6.7E-23 1.5E-27 174.8 26.6 299 47-365 135-480 (626)
137 KOG2048 WD40 repeat protein [G 99.9 1.7E-22 3.8E-27 178.3 28.5 281 65-363 24-320 (691)
138 KOG2096 WD40 repeat protein [G 99.9 4.6E-23 9.9E-28 166.0 22.5 289 91-407 63-389 (420)
139 KOG1408 WD40 repeat protein [F 99.9 1.1E-23 2.3E-28 187.0 19.5 246 64-363 457-714 (1080)
140 KOG4378 Nuclear protein COP1 [ 99.9 1.8E-23 3.8E-28 178.0 19.9 282 45-344 11-305 (673)
141 KOG2048 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 177.2 27.5 311 45-367 89-510 (691)
142 KOG2919 Guanine nucleotide-bin 99.9 5.1E-23 1.1E-27 166.0 21.1 281 111-411 51-360 (406)
143 KOG1445 Tumor-specific antigen 99.9 2.8E-23 6.1E-28 182.0 20.9 118 248-366 630-754 (1012)
144 KOG0302 Ribosome Assembly prot 99.9 5.1E-24 1.1E-28 175.1 14.6 267 106-411 148-428 (440)
145 KOG1538 Uncharacterized conser 99.9 9.2E-23 2E-27 179.8 23.1 276 68-367 14-298 (1081)
146 KOG1063 RNA polymerase II elon 99.9 7.2E-23 1.6E-27 181.1 22.2 329 60-404 261-736 (764)
147 KOG0301 Phospholipase A2-activ 99.9 6.6E-23 1.4E-27 181.4 21.4 247 47-319 36-288 (745)
148 KOG1009 Chromatin assembly com 99.9 1.6E-22 3.4E-27 168.1 22.2 300 66-367 13-377 (434)
149 KOG0642 Cell-cycle nuclear pro 99.9 1.4E-23 3E-28 181.4 16.3 265 61-370 289-569 (577)
150 KOG1274 WD40 repeat protein [G 99.9 6E-22 1.3E-26 180.8 26.9 243 106-363 10-263 (933)
151 KOG0641 WD40 repeat protein [G 99.9 2E-21 4.2E-26 149.2 25.5 243 61-319 84-349 (350)
152 KOG0270 WD40 repeat-containing 99.9 5.4E-23 1.2E-27 172.7 16.6 208 62-281 239-454 (463)
153 KOG0639 Transducin-like enhanc 99.9 3.5E-23 7.5E-28 176.5 15.5 250 107-370 417-671 (705)
154 KOG1332 Vesicle coat complex C 99.9 1.9E-22 4.2E-27 156.4 17.2 232 39-319 26-286 (299)
155 KOG2919 Guanine nucleotide-bin 99.9 2.1E-21 4.6E-26 156.8 23.6 276 69-353 52-361 (406)
156 KOG2055 WD40 repeat protein [G 99.9 9.7E-22 2.1E-26 166.0 22.6 269 109-404 213-495 (514)
157 KOG0267 Microtubule severing p 99.9 7.9E-24 1.7E-28 188.0 10.1 245 80-404 5-251 (825)
158 KOG1034 Transcriptional repres 99.9 2.7E-23 5.8E-28 168.0 12.3 281 22-362 93-383 (385)
159 KOG0307 Vesicle coat complex C 99.9 4.2E-23 9.2E-28 192.8 14.1 281 71-415 11-320 (1049)
160 KOG0322 G-protein beta subunit 99.9 3.4E-22 7.3E-27 156.8 16.5 288 59-361 7-322 (323)
161 KOG0321 WD40 repeat-containing 99.9 1.5E-22 3.3E-27 177.4 14.9 278 72-415 55-384 (720)
162 KOG4328 WD40 protein [Function 99.9 3.2E-21 7E-26 162.7 22.0 270 95-373 172-461 (498)
163 KOG1273 WD40 repeat protein [G 99.9 1.3E-21 2.7E-26 157.5 17.7 306 1-320 1-323 (405)
164 KOG0650 WD40 repeat nucleolar 99.9 1.9E-21 4.1E-26 169.4 20.0 284 102-410 393-724 (733)
165 KOG1538 Uncharacterized conser 99.9 1.8E-21 3.9E-26 171.8 19.4 272 26-319 14-293 (1081)
166 KOG1517 Guanine nucleotide bin 99.9 1.2E-20 2.6E-25 174.8 23.8 297 66-365 1064-1384(1387)
167 KOG1007 WD repeat protein TSSC 99.9 1.6E-20 3.6E-25 149.3 20.6 254 60-362 57-361 (370)
168 KOG4227 WD40 repeat protein [G 99.9 2E-20 4.3E-25 155.1 21.7 286 59-361 49-386 (609)
169 KOG0290 Conserved WD40 repeat- 99.9 2.4E-20 5.1E-25 148.6 19.6 241 64-358 94-361 (364)
170 KOG0290 Conserved WD40 repeat- 99.9 5.8E-20 1.3E-24 146.4 20.8 285 67-408 45-352 (364)
171 KOG0644 Uncharacterized conser 99.9 4.6E-22 9.9E-27 179.6 10.0 287 57-367 181-473 (1113)
172 KOG1587 Cytoplasmic dynein int 99.9 4.7E-20 1E-24 167.6 22.7 258 65-363 241-517 (555)
173 COG2319 FOG: WD40 repeat [Gene 99.9 3.2E-18 6.9E-23 159.7 35.7 291 61-365 60-362 (466)
174 KOG1334 WD40 repeat protein [G 99.9 7.2E-21 1.6E-25 161.9 15.7 286 57-409 133-454 (559)
175 KOG0649 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 141.2 20.4 250 68-362 12-274 (325)
176 KOG1007 WD repeat protein TSSC 99.9 9.9E-21 2.1E-25 150.6 14.7 294 80-418 27-357 (370)
177 KOG0303 Actin-binding protein 99.9 6.5E-20 1.4E-24 152.1 18.3 226 61-300 76-320 (472)
178 KOG1310 WD40 repeat protein [G 99.9 3.9E-20 8.4E-25 159.8 17.2 227 58-327 42-311 (758)
179 PRK11028 6-phosphogluconolacto 99.9 3.7E-18 7.9E-23 152.2 30.4 266 82-362 5-304 (330)
180 KOG1240 Protein kinase contain 99.8 1.3E-18 2.8E-23 163.9 24.9 299 55-360 1037-1431(1431)
181 COG2319 FOG: WD40 repeat [Gene 99.8 3.2E-17 6.9E-22 153.0 34.2 299 46-363 134-443 (466)
182 KOG1963 WD40 repeat protein [G 99.8 9.5E-18 2.1E-22 153.3 28.8 291 64-371 203-548 (792)
183 KOG0771 Prolactin regulatory e 99.8 3E-19 6.5E-24 149.8 17.3 204 70-363 148-355 (398)
184 KOG0303 Actin-binding protein 99.8 2.1E-18 4.5E-23 143.3 21.5 215 104-365 76-297 (472)
185 PRK01742 tolB translocation pr 99.8 1.8E-18 4E-23 158.7 22.9 239 88-404 183-428 (429)
186 KOG2445 Nuclear pore complex c 99.8 1.2E-18 2.5E-23 140.1 17.9 266 31-320 20-319 (361)
187 KOG1445 Tumor-specific antigen 99.8 3.2E-19 7E-24 156.9 15.7 182 182-364 602-800 (1012)
188 KOG2110 Uncharacterized conser 99.8 1.7E-17 3.7E-22 136.9 24.4 238 109-365 5-251 (391)
189 KOG1524 WD40 repeat-containing 99.8 6.5E-19 1.4E-23 151.9 16.0 142 80-236 76-218 (737)
190 KOG2111 Uncharacterized conser 99.8 5.5E-17 1.2E-21 131.3 25.8 237 111-365 7-259 (346)
191 KOG0642 Cell-cycle nuclear pro 99.8 4E-19 8.7E-24 154.1 14.6 242 30-327 300-569 (577)
192 KOG4227 WD40 repeat protein [G 99.8 7.8E-19 1.7E-23 145.7 15.6 255 104-367 51-327 (609)
193 KOG1009 Chromatin assembly com 99.8 1.4E-17 3E-22 139.0 21.4 271 40-324 30-377 (434)
194 KOG1963 WD40 repeat protein [G 99.8 1E-16 2.3E-21 146.6 28.0 329 25-366 16-491 (792)
195 KOG1188 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 138.3 17.5 191 182-372 49-252 (376)
196 KOG2321 WD40 repeat protein [G 99.8 4.7E-17 1E-21 141.7 24.1 283 64-366 49-347 (703)
197 PF02239 Cytochrom_D1: Cytochr 99.8 4.2E-16 9.2E-21 138.3 30.8 278 80-371 6-356 (369)
198 KOG2139 WD40 repeat protein [G 99.8 2.8E-16 6E-21 129.5 26.1 293 66-362 98-431 (445)
199 KOG1587 Cytoplasmic dynein int 99.8 3.1E-17 6.6E-22 149.5 20.8 230 89-366 222-476 (555)
200 KOG1034 Transcriptional repres 99.8 1E-18 2.2E-23 141.7 9.6 235 64-366 87-341 (385)
201 KOG1523 Actin-related protein 99.8 1.1E-16 2.3E-21 129.7 20.5 235 65-353 9-269 (361)
202 PRK11028 6-phosphogluconolacto 99.8 2.4E-15 5.3E-20 134.1 30.7 248 58-319 27-304 (330)
203 KOG1272 WD40-repeat-containing 99.8 3.6E-18 7.9E-23 144.8 10.6 228 68-360 131-360 (545)
204 KOG2110 Uncharacterized conser 99.8 5.5E-15 1.2E-19 122.3 28.0 273 68-363 48-331 (391)
205 KOG3881 Uncharacterized conser 99.7 6.8E-16 1.5E-20 128.5 20.6 254 66-370 55-328 (412)
206 PRK03629 tolB translocation pr 99.7 3.9E-15 8.5E-20 136.4 27.1 237 89-402 179-428 (429)
207 KOG2314 Translation initiation 99.7 5E-15 1.1E-19 128.8 25.7 312 69-409 213-600 (698)
208 PRK01742 tolB translocation pr 99.7 5.2E-16 1.1E-20 142.6 21.2 223 59-343 196-426 (429)
209 KOG4497 Uncharacterized conser 99.7 5.2E-16 1.1E-20 126.3 18.2 278 66-369 48-398 (447)
210 KOG1517 Guanine nucleotide bin 99.7 2.2E-15 4.7E-20 140.6 22.8 275 111-407 1066-1367(1387)
211 PRK05137 tolB translocation pr 99.7 1.2E-14 2.6E-19 134.1 26.8 218 89-365 182-415 (435)
212 PRK02889 tolB translocation pr 99.7 9.1E-15 2E-19 134.2 25.4 207 89-354 176-392 (427)
213 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.3E-20 132.4 17.8 193 177-402 189-385 (636)
214 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.5E-20 132.2 18.0 221 76-367 183-457 (636)
215 PRK04922 tolB translocation pr 99.7 6.9E-15 1.5E-19 135.5 23.8 216 89-363 184-412 (433)
216 KOG1310 WD40 repeat protein [G 99.7 6.5E-16 1.4E-20 134.1 15.7 219 101-371 42-312 (758)
217 KOG0644 Uncharacterized conser 99.7 1E-16 2.2E-21 145.7 10.6 257 47-323 213-472 (1113)
218 KOG0649 WD40 repeat protein [G 99.7 4.1E-15 8.8E-20 116.1 17.5 159 67-234 115-274 (325)
219 KOG1523 Actin-related protein 99.7 7.5E-15 1.6E-19 119.2 19.4 209 105-365 6-239 (361)
220 KOG1240 Protein kinase contain 99.7 9.8E-15 2.1E-19 138.3 23.1 267 94-367 1034-1339(1431)
221 KOG2111 Uncharacterized conser 99.7 1.4E-13 3E-18 111.9 26.2 215 89-360 75-320 (346)
222 PF08662 eIF2A: Eukaryotic tra 99.7 8.7E-15 1.9E-19 118.1 19.2 157 207-371 9-187 (194)
223 KOG1524 WD40 repeat-containing 99.7 2.8E-15 6E-20 129.9 16.3 236 64-358 12-282 (737)
224 PF02239 Cytochrom_D1: Cytochr 99.7 8.4E-14 1.8E-18 123.8 25.6 270 52-328 22-356 (369)
225 KOG4497 Uncharacterized conser 99.7 5E-16 1.1E-20 126.4 10.0 231 114-370 13-248 (447)
226 KOG1354 Serine/threonine prote 99.7 4.9E-14 1.1E-18 115.6 20.7 277 65-365 24-362 (433)
227 KOG2315 Predicted translation 99.6 8.2E-13 1.8E-17 115.6 28.6 290 66-367 34-394 (566)
228 PRK05137 tolB translocation pr 99.6 2.1E-13 4.5E-18 126.0 24.6 223 59-342 194-432 (435)
229 PRK03629 tolB translocation pr 99.6 1.7E-13 3.7E-18 125.7 23.7 221 61-342 193-427 (429)
230 PF10282 Lactonase: Lactonase, 99.6 3.3E-12 7.2E-17 114.0 31.3 272 82-366 2-328 (345)
231 KOG3881 Uncharacterized conser 99.6 7.6E-14 1.6E-18 116.5 19.0 230 64-343 103-342 (412)
232 KOG0322 G-protein beta subunit 99.6 1.5E-14 3.1E-19 114.4 14.0 270 100-405 5-307 (323)
233 KOG0771 Prolactin regulatory e 99.6 1.2E-13 2.5E-18 116.6 19.5 182 207-407 148-340 (398)
234 KOG2321 WD40 repeat protein [G 99.6 2.2E-13 4.8E-18 119.3 20.8 250 107-372 49-312 (703)
235 TIGR02658 TTQ_MADH_Hv methylam 99.6 1.1E-11 2.4E-16 107.6 30.9 267 89-370 27-338 (352)
236 KOG2139 WD40 repeat protein [G 99.6 2.9E-13 6.2E-18 112.0 19.6 239 109-364 98-385 (445)
237 PRK04922 tolB translocation pr 99.6 2.8E-13 6.2E-18 124.9 21.7 222 59-299 196-432 (433)
238 KOG1272 WD40-repeat-containing 99.6 3.1E-15 6.8E-20 127.3 7.8 204 109-372 129-333 (545)
239 PRK02889 tolB translocation pr 99.6 3.2E-13 6.9E-18 124.1 21.5 223 60-300 189-425 (427)
240 PF10282 Lactonase: Lactonase, 99.6 2.8E-11 6.1E-16 108.0 32.9 265 66-340 36-345 (345)
241 KOG1334 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 120.5 13.4 268 48-366 166-470 (559)
242 PRK04792 tolB translocation pr 99.6 4.1E-12 8.8E-17 117.1 26.6 221 90-370 199-432 (448)
243 COG5354 Uncharacterized protei 99.6 1.1E-11 2.5E-16 107.3 27.1 291 65-366 31-399 (561)
244 TIGR02800 propeller_TolB tol-p 99.6 1.8E-12 3.8E-17 120.1 23.9 214 89-361 170-396 (417)
245 PRK00178 tolB translocation pr 99.5 9.6E-12 2.1E-16 115.2 28.0 214 90-362 180-406 (430)
246 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.5E-17 105.8 18.4 152 168-325 10-184 (194)
247 KOG1409 Uncharacterized conser 99.5 1.2E-12 2.7E-17 107.6 18.1 257 57-366 15-274 (404)
248 KOG0280 Uncharacterized conser 99.5 5.1E-12 1.1E-16 101.8 19.1 270 87-365 44-336 (339)
249 KOG1409 Uncharacterized conser 99.5 7.1E-12 1.5E-16 103.2 18.9 278 66-363 68-395 (404)
250 PRK01029 tolB translocation pr 99.5 4.2E-11 9.2E-16 109.5 26.1 160 206-367 233-408 (428)
251 PRK00178 tolB translocation pr 99.5 2.1E-11 4.5E-16 113.0 23.3 220 61-299 193-427 (430)
252 COG2706 3-carboxymuconate cycl 99.5 4.8E-10 1E-14 93.7 28.4 264 88-362 15-321 (346)
253 PRK04792 tolB translocation pr 99.5 2.3E-11 5.1E-16 112.1 23.0 217 65-342 216-446 (448)
254 TIGR02658 TTQ_MADH_Hv methylam 99.5 7.8E-10 1.7E-14 96.2 30.1 258 50-327 31-338 (352)
255 COG5354 Uncharacterized protei 99.4 8E-11 1.7E-15 102.2 23.3 272 66-354 71-421 (561)
256 TIGR02800 propeller_TolB tol-p 99.4 3.1E-11 6.7E-16 111.8 22.7 198 60-275 183-396 (417)
257 KOG0974 WD-repeat protein WDR6 99.4 8.3E-12 1.8E-16 117.1 17.6 198 112-363 90-289 (967)
258 PLN02919 haloacid dehalogenase 99.4 2.8E-10 6E-15 114.8 29.8 259 70-366 571-892 (1057)
259 KOG1064 RAVE (regulator of V-A 99.4 1.5E-12 3.4E-17 128.2 12.7 202 63-374 2205-2410(2439)
260 COG2706 3-carboxymuconate cycl 99.4 5E-09 1.1E-13 87.8 31.3 277 63-341 36-345 (346)
261 PRK01029 tolB translocation pr 99.4 1.3E-10 2.9E-15 106.3 24.4 229 62-344 180-426 (428)
262 KOG0974 WD-repeat protein WDR6 99.4 1.9E-10 4.2E-15 108.2 25.4 146 74-235 141-289 (967)
263 COG5170 CDC55 Serine/threonine 99.4 7.4E-12 1.6E-16 101.7 14.0 269 65-362 25-367 (460)
264 KOG1912 WD40 repeat protein [G 99.4 3.1E-10 6.8E-15 103.5 25.3 337 53-407 42-580 (1062)
265 PF04158 Sof1: Sof1-like domai 99.4 1.2E-12 2.6E-17 86.7 6.8 86 363-448 3-88 (88)
266 KOG2041 WD40 repeat protein [G 99.4 5.5E-11 1.2E-15 107.4 19.1 265 66-348 14-324 (1189)
267 TIGR03300 assembly_YfgL outer 99.3 2E-09 4.4E-14 98.1 27.4 267 80-371 66-347 (377)
268 KOG0280 Uncharacterized conser 99.3 4.8E-11 1E-15 96.3 14.4 201 69-320 124-334 (339)
269 KOG4190 Uncharacterized conser 99.3 3.7E-12 8.1E-17 111.5 8.6 225 57-374 726-960 (1034)
270 PF04762 IKI3: IKI3 family; I 99.3 4.8E-09 1E-13 104.0 31.3 294 64-365 73-459 (928)
271 KOG3914 WD repeat protein WDR4 99.3 4.3E-11 9.4E-16 100.8 14.4 163 208-373 67-234 (390)
272 PF08450 SGL: SMP-30/Gluconola 99.3 8.5E-09 1.8E-13 87.8 28.8 218 114-350 4-243 (246)
273 COG4946 Uncharacterized protei 99.3 1.3E-08 2.8E-13 88.1 27.5 168 80-264 333-507 (668)
274 KOG4547 WD40 repeat-containing 99.3 3.4E-10 7.4E-15 100.2 18.4 195 119-363 3-221 (541)
275 PF04762 IKI3: IKI3 family; I 99.3 1.1E-08 2.4E-13 101.5 29.8 283 65-363 119-520 (928)
276 KOG2314 Translation initiation 99.3 2.7E-09 5.8E-14 93.9 22.4 247 68-319 251-573 (698)
277 KOG2315 Predicted translation 99.3 9.6E-09 2.1E-13 90.7 24.8 262 89-373 11-355 (566)
278 KOG0309 Conserved WD40 repeat- 99.2 5.5E-11 1.2E-15 107.7 11.2 262 66-381 24-306 (1081)
279 KOG4714 Nucleoporin [Nuclear s 99.2 8E-10 1.7E-14 87.9 15.1 206 58-276 27-254 (319)
280 PRK04043 tolB translocation pr 99.2 1.5E-08 3.3E-13 92.2 25.2 154 203-363 232-401 (419)
281 KOG0882 Cyclophilin-related pe 99.2 3.3E-10 7.2E-15 96.9 13.3 268 64-374 7-317 (558)
282 KOG4547 WD40 repeat-containing 99.2 1.3E-09 2.8E-14 96.6 17.1 146 80-237 71-223 (541)
283 TIGR03300 assembly_YfgL outer 99.2 3.3E-08 7.1E-13 90.2 26.5 261 80-359 106-376 (377)
284 KOG0309 Conserved WD40 repeat- 99.2 1.1E-10 2.4E-15 105.8 9.8 211 59-320 107-340 (1081)
285 PF15492 Nbas_N: Neuroblastoma 99.2 8.6E-08 1.9E-12 78.1 24.4 244 72-376 3-273 (282)
286 KOG1354 Serine/threonine prote 99.1 5.6E-10 1.2E-14 92.3 11.5 240 63-316 161-431 (433)
287 KOG1912 WD40 repeat protein [G 99.1 4.9E-09 1.1E-13 96.0 18.2 268 66-364 15-306 (1062)
288 KOG2041 WD40 repeat protein [G 99.1 4.2E-09 9.1E-14 95.6 17.5 242 108-353 13-279 (1189)
289 KOG0882 Cyclophilin-related pe 99.1 9E-10 1.9E-14 94.3 12.5 214 108-372 8-241 (558)
290 KOG1832 HIV-1 Vpr-binding prot 99.1 1.4E-10 3E-15 107.4 7.3 259 59-350 1094-1377(1516)
291 KOG4532 WD40-like repeat conta 99.1 4.7E-08 1E-12 78.4 20.3 241 70-362 71-331 (344)
292 PRK04043 tolB translocation pr 99.1 7.9E-08 1.7E-12 87.6 24.2 191 68-276 189-400 (419)
293 KOG1645 RING-finger-containing 99.1 1.7E-08 3.6E-13 85.6 17.7 254 59-319 186-461 (463)
294 COG4946 Uncharacterized protei 99.1 6.3E-08 1.4E-12 83.9 20.8 224 119-351 276-507 (668)
295 KOG4532 WD40-like repeat conta 99.0 9.6E-08 2.1E-12 76.7 19.5 201 174-375 83-295 (344)
296 KOG1275 PAB-dependent poly(A) 99.0 8.5E-09 1.8E-13 96.2 15.3 140 175-317 187-340 (1118)
297 PLN02919 haloacid dehalogenase 99.0 2E-07 4.4E-12 94.5 26.3 214 69-323 626-892 (1057)
298 KOG4190 Uncharacterized conser 99.0 1.2E-09 2.6E-14 96.1 8.5 192 102-380 728-924 (1034)
299 PF15492 Nbas_N: Neuroblastoma 99.0 2.2E-07 4.8E-12 75.7 20.5 40 288-327 228-267 (282)
300 PRK11138 outer membrane biogen 99.0 3.7E-07 8E-12 83.6 24.5 267 80-370 70-361 (394)
301 PF13360 PQQ_2: PQQ-like domai 99.0 5E-07 1.1E-11 76.7 23.4 225 87-367 1-235 (238)
302 KOG3914 WD repeat protein WDR4 99.0 1.9E-08 4.2E-13 85.2 14.0 162 112-327 65-231 (390)
303 KOG4714 Nucleoporin [Nuclear s 99.0 4.3E-09 9.3E-14 83.8 9.4 146 217-363 102-255 (319)
304 KOG1920 IkappaB kinase complex 99.0 6.3E-07 1.4E-11 86.8 25.1 244 66-321 68-324 (1265)
305 PRK11138 outer membrane biogen 99.0 8.1E-07 1.8E-11 81.4 25.4 261 80-361 121-393 (394)
306 PF00400 WD40: WD domain, G-be 99.0 3.1E-09 6.7E-14 61.1 6.1 39 99-137 1-39 (39)
307 PF00400 WD40: WD domain, G-be 98.9 1.8E-09 4E-14 62.0 4.6 38 57-95 2-39 (39)
308 PF07433 DUF1513: Protein of u 98.9 3.2E-06 6.9E-11 71.3 24.8 239 69-356 7-279 (305)
309 KOG2066 Vacuolar assembly/sort 98.9 9.7E-08 2.1E-12 88.2 15.3 141 216-362 83-233 (846)
310 KOG2114 Vacuolar assembly/sort 98.9 1.1E-06 2.3E-11 82.2 21.8 217 68-331 27-255 (933)
311 KOG1064 RAVE (regulator of V-A 98.9 3.4E-08 7.3E-13 98.7 12.8 165 202-372 2207-2376(2439)
312 PF11768 DUF3312: Protein of u 98.8 1.7E-05 3.7E-10 71.7 28.5 114 284-401 254-367 (545)
313 COG5170 CDC55 Serine/threonine 98.8 6.1E-08 1.3E-12 79.4 11.4 251 109-376 26-324 (460)
314 PF08450 SGL: SMP-30/Gluconola 98.8 1.7E-05 3.8E-10 67.5 27.2 215 71-307 4-243 (246)
315 PRK02888 nitrous-oxide reducta 98.8 5.4E-06 1.2E-10 76.7 24.0 239 81-320 68-405 (635)
316 PF06433 Me-amine-dh_H: Methyl 98.8 7.2E-06 1.6E-10 70.1 22.1 269 89-371 17-329 (342)
317 KOG1832 HIV-1 Vpr-binding prot 98.7 9.6E-09 2.1E-13 95.6 5.0 207 100-374 1092-1303(1516)
318 KOG4649 PQQ (pyrrolo-quinoline 98.7 4E-05 8.7E-10 61.9 23.3 66 80-145 64-129 (354)
319 cd00216 PQQ_DH Dehydrogenases 98.7 1.6E-05 3.5E-10 74.7 25.1 275 80-371 62-433 (488)
320 KOG2695 WD40 repeat protein [G 98.7 9.4E-08 2E-12 79.5 8.4 152 220-373 228-387 (425)
321 KOG2066 Vacuolar assembly/sort 98.7 2E-06 4.3E-11 79.9 17.6 150 66-243 39-196 (846)
322 PF00930 DPPIV_N: Dipeptidyl p 98.7 5.4E-05 1.2E-09 68.2 26.5 266 75-351 1-346 (353)
323 KOG1008 Uncharacterized conser 98.7 2.9E-08 6.3E-13 89.2 5.1 205 66-319 56-275 (783)
324 KOG1645 RING-finger-containing 98.5 2.3E-06 4.9E-11 73.0 13.0 159 185-345 175-343 (463)
325 KOG2695 WD40 repeat protein [G 98.5 5.5E-07 1.2E-11 75.1 8.7 152 83-245 228-387 (425)
326 KOG3621 WD40 repeat-containing 98.5 6.1E-05 1.3E-09 69.4 22.2 141 66-213 33-180 (726)
327 PF14583 Pectate_lyase22: Olig 98.5 0.00066 1.4E-08 59.6 27.4 273 73-362 42-381 (386)
328 KOG3617 WD40 and TPR repeat-co 98.5 4.4E-06 9.5E-11 78.1 14.5 71 69-140 62-132 (1416)
329 KOG3617 WD40 and TPR repeat-co 98.5 4.4E-06 9.5E-11 78.1 13.9 313 70-413 19-377 (1416)
330 KOG1275 PAB-dependent poly(A) 98.5 3.4E-06 7.5E-11 79.4 13.0 146 68-232 179-340 (1118)
331 PF11768 DUF3312: Protein of u 98.5 3.5E-06 7.6E-11 76.0 12.6 76 64-142 257-332 (545)
332 PRK02888 nitrous-oxide reducta 98.4 1.4E-05 2.9E-10 74.1 16.1 215 74-308 200-450 (635)
333 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00077 1.7E-08 61.6 26.5 48 90-139 62-109 (410)
334 PF04053 Coatomer_WDAD: Coatom 98.4 0.00028 6.1E-09 64.5 23.5 229 105-365 28-265 (443)
335 KOG2114 Vacuolar assembly/sort 98.4 3.9E-05 8.5E-10 72.2 18.0 193 170-364 30-245 (933)
336 cd00216 PQQ_DH Dehydrogenases 98.4 0.00078 1.7E-08 63.5 27.2 245 80-330 111-435 (488)
337 PF07433 DUF1513: Protein of u 98.4 0.00016 3.5E-09 61.3 20.0 193 59-274 49-283 (305)
338 COG3391 Uncharacterized conser 98.4 0.0019 4.1E-08 58.8 28.4 265 91-371 13-292 (381)
339 COG0823 TolB Periplasmic compo 98.4 5.6E-05 1.2E-09 68.8 18.4 187 65-266 191-390 (425)
340 KOG1920 IkappaB kinase complex 98.4 0.00029 6.3E-09 69.2 23.5 238 109-364 68-324 (1265)
341 COG0823 TolB Periplasmic compo 98.3 3.2E-05 6.8E-10 70.3 16.0 176 185-365 175-361 (425)
342 PF03178 CPSF_A: CPSF A subuni 98.3 0.00028 6.1E-09 62.7 21.4 220 89-359 2-262 (321)
343 PF02897 Peptidase_S9_N: Proly 98.3 0.0027 5.8E-08 58.9 28.7 243 67-366 124-408 (414)
344 PF08553 VID27: VID27 cytoplas 98.3 9.1E-05 2E-09 71.5 18.9 194 166-362 433-647 (794)
345 PF04053 Coatomer_WDAD: Coatom 98.3 0.00051 1.1E-08 62.9 22.9 218 65-319 31-262 (443)
346 PF00780 CNH: CNH domain; Int 98.3 0.0016 3.4E-08 56.6 25.3 239 80-373 8-266 (275)
347 COG3386 Gluconolactonase [Carb 98.2 0.001 2.3E-08 57.7 22.7 218 116-351 31-274 (307)
348 COG3391 Uncharacterized conser 98.2 0.0033 7.2E-08 57.2 27.2 261 68-343 32-309 (381)
349 PF13360 PQQ_2: PQQ-like domai 98.2 0.00017 3.6E-09 61.2 17.9 179 183-367 3-196 (238)
350 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0027 5.9E-08 60.2 26.7 279 80-371 70-499 (527)
351 PF06977 SdiA-regulated: SdiA- 98.2 0.00044 9.5E-09 57.8 18.9 193 61-259 16-235 (248)
352 PF08596 Lgl_C: Lethal giant l 98.2 0.00016 3.4E-09 65.2 17.3 240 111-372 3-300 (395)
353 PF06433 Me-amine-dh_H: Methyl 98.2 0.0033 7.1E-08 54.3 27.4 243 71-330 40-331 (342)
354 KOG1008 Uncharacterized conser 98.2 1.6E-06 3.4E-11 78.5 3.7 201 109-363 56-276 (783)
355 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0028 6.1E-08 51.6 20.7 125 75-255 19-145 (354)
356 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0012 2.6E-08 59.5 20.1 240 66-308 42-346 (353)
357 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.00069 1.5E-08 47.8 14.2 66 69-138 2-70 (111)
358 PF14583 Pectate_lyase22: Olig 98.0 0.0093 2E-07 52.6 23.5 241 95-352 16-302 (386)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.017 3.6E-07 54.9 26.6 159 80-239 121-338 (527)
360 PF04841 Vps16_N: Vps16, N-ter 98.0 0.01 2.2E-07 54.5 24.2 188 56-255 70-269 (410)
361 PF08596 Lgl_C: Lethal giant l 97.9 0.0046 1E-07 55.9 21.5 246 68-361 3-334 (395)
362 smart00320 WD40 WD40 repeats. 97.9 4.4E-05 9.4E-10 43.1 5.7 39 99-137 2-40 (40)
363 PF03178 CPSF_A: CPSF A subuni 97.9 0.0024 5.3E-08 56.8 19.0 174 184-363 3-203 (321)
364 KOG3621 WD40 repeat-containing 97.9 0.0001 2.2E-09 68.0 9.8 106 258-363 45-155 (726)
365 KOG2444 WD40 repeat protein [G 97.9 3.5E-05 7.5E-10 61.2 6.0 146 218-365 32-180 (238)
366 smart00320 WD40 WD40 repeats. 97.9 2.5E-05 5.5E-10 44.1 4.2 38 57-95 3-40 (40)
367 PRK13616 lipoprotein LpqB; Pro 97.8 0.0027 5.9E-08 60.6 19.2 178 177-362 323-525 (591)
368 KOG1897 Damage-specific DNA bi 97.8 0.037 8.1E-07 54.0 25.9 293 68-370 489-823 (1096)
369 KOG4640 Anaphase-promoting com 97.8 0.00011 2.3E-09 67.0 8.8 79 66-146 20-99 (665)
370 PF08553 VID27: VID27 cytoplas 97.8 0.00094 2E-08 64.8 14.7 132 183-318 504-646 (794)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.04 8.7E-07 49.9 25.6 84 289-372 307-408 (415)
372 KOG4640 Anaphase-promoting com 97.6 0.00025 5.5E-09 64.7 8.5 78 290-369 21-99 (665)
373 PF05694 SBP56: 56kDa selenium 97.6 0.034 7.4E-07 49.7 20.5 222 120-351 86-392 (461)
374 PF06977 SdiA-regulated: SdiA- 97.6 0.037 8E-07 46.5 22.4 199 104-316 16-247 (248)
375 KOG1897 Damage-specific DNA bi 97.5 0.11 2.3E-06 51.0 26.3 290 66-368 530-862 (1096)
376 KOG2395 Protein involved in va 97.5 0.0024 5.1E-08 57.4 12.3 145 172-319 342-500 (644)
377 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.8E-07 40.9 14.1 65 289-358 42-110 (111)
378 PRK13616 lipoprotein LpqB; Pro 97.4 0.042 9.1E-07 52.8 20.8 198 65-314 348-563 (591)
379 KOG4499 Ca2+-binding protein R 97.4 0.044 9.5E-07 44.3 17.8 217 80-342 28-263 (310)
380 KOG2079 Vacuolar assembly/sort 97.4 0.00095 2.1E-08 65.0 9.2 107 257-365 98-206 (1206)
381 KOG2395 Protein involved in va 97.3 0.0033 7.1E-08 56.6 11.2 141 218-361 348-499 (644)
382 PHA02713 hypothetical protein; 97.3 0.018 3.9E-07 55.3 17.2 221 90-329 273-543 (557)
383 COG3204 Uncharacterized protei 97.3 0.075 1.6E-06 44.7 17.8 171 62-236 81-265 (316)
384 COG3490 Uncharacterized protei 97.3 0.038 8.2E-07 46.0 15.8 188 73-275 120-347 (366)
385 KOG2280 Vacuolar assembly/sort 97.3 0.061 1.3E-06 51.0 18.8 71 65-139 42-112 (829)
386 KOG4441 Proteins containing BT 97.2 0.044 9.6E-07 52.6 18.5 226 80-322 286-549 (571)
387 PF10647 Gmad1: Lipoprotein Lp 97.2 0.087 1.9E-06 44.9 18.1 149 205-354 25-187 (253)
388 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0014 3.1E-08 38.5 5.0 34 333-367 12-45 (47)
389 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0018 3.8E-08 38.1 5.3 34 66-101 11-44 (47)
390 PF10168 Nup88: Nuclear pore c 97.1 0.3 6.6E-06 48.0 23.4 36 203-238 146-183 (717)
391 PF07995 GSDH: Glucose / Sorbo 97.1 0.17 3.7E-06 45.1 20.2 70 288-357 251-330 (331)
392 COG3386 Gluconolactonase [Carb 97.1 0.16 3.5E-06 44.3 21.7 221 72-305 30-271 (307)
393 KOG2444 WD40 repeat protein [G 97.1 0.0007 1.5E-08 54.0 4.3 102 217-319 71-177 (238)
394 TIGR03118 PEPCTERM_chp_1 conse 97.1 0.16 3.4E-06 43.2 20.8 76 298-373 209-290 (336)
395 PF00780 CNH: CNH domain; Int 97.1 0.051 1.1E-06 47.2 16.0 145 217-370 8-173 (275)
396 PF05096 Glu_cyclase_2: Glutam 96.9 0.19 4.2E-06 42.2 17.1 195 205-407 46-246 (264)
397 KOG3630 Nuclear pore complex, 96.9 0.021 4.5E-07 56.5 12.9 144 205-349 102-260 (1405)
398 PF05096 Glu_cyclase_2: Glutam 96.9 0.22 4.7E-06 41.8 20.8 178 168-351 49-249 (264)
399 PF02897 Peptidase_S9_N: Proly 96.9 0.25 5.4E-06 45.9 19.8 116 206-321 126-262 (414)
400 PF14727 PHTB1_N: PTHB1 N-term 96.9 0.35 7.6E-06 44.1 28.1 274 75-363 33-361 (418)
401 PHA02713 hypothetical protein; 96.9 0.029 6.2E-07 53.9 13.7 184 174-365 303-536 (557)
402 KOG2079 Vacuolar assembly/sort 96.8 0.03 6.4E-07 55.2 13.0 102 80-190 100-202 (1206)
403 KOG4441 Proteins containing BT 96.8 0.15 3.2E-06 49.1 17.7 226 120-364 284-548 (571)
404 COG3823 Glutamine cyclotransfe 96.7 0.14 3E-06 40.8 13.4 173 174-350 55-247 (262)
405 TIGR03074 PQQ_membr_DH membran 96.6 0.84 1.8E-05 45.5 23.4 62 310-371 413-486 (764)
406 PF12234 Rav1p_C: RAVE protein 96.5 0.069 1.5E-06 50.9 13.2 123 67-191 30-156 (631)
407 PRK10115 protease 2; Provision 96.5 1.1 2.3E-05 44.6 28.5 60 67-129 127-191 (686)
408 COG5276 Uncharacterized conser 96.4 0.52 1.1E-05 39.8 25.2 271 66-361 86-368 (370)
409 TIGR02604 Piru_Ver_Nterm putat 96.2 0.99 2.1E-05 41.1 20.9 146 67-223 14-202 (367)
410 KOG3616 Selective LIM binding 96.1 0.4 8.7E-06 45.8 15.5 69 66-138 14-82 (1636)
411 PF05694 SBP56: 56kDa selenium 95.9 1.2 2.6E-05 40.3 20.9 220 80-308 88-392 (461)
412 PHA03098 kelch-like protein; P 95.9 0.26 5.7E-06 47.5 14.4 141 80-237 296-467 (534)
413 COG3204 Uncharacterized protei 95.9 0.95 2.1E-05 38.4 18.9 162 105-278 81-265 (316)
414 PHA03098 kelch-like protein; P 95.9 0.48 1E-05 45.7 15.9 173 184-364 312-513 (534)
415 TIGR03074 PQQ_membr_DH membran 95.8 2.4 5.2E-05 42.4 26.7 162 80-242 261-485 (764)
416 KOG4499 Ca2+-binding protein R 95.7 0.86 1.9E-05 37.2 13.7 149 66-222 108-272 (310)
417 PF15390 DUF4613: Domain of un 95.6 1.3 2.8E-05 41.5 16.2 153 67-234 20-186 (671)
418 PF15390 DUF4613: Domain of un 95.6 0.78 1.7E-05 42.8 14.7 71 293-363 116-187 (671)
419 PF14761 HPS3_N: Hermansky-Pud 95.6 0.89 1.9E-05 36.8 13.4 112 80-192 29-164 (215)
420 PF10168 Nup88: Nuclear pore c 95.4 0.57 1.2E-05 46.2 14.5 35 287-321 144-181 (717)
421 PF08728 CRT10: CRT10; InterP 95.4 0.68 1.5E-05 45.0 14.5 164 65-233 39-245 (717)
422 PF10214 Rrn6: RNA polymerase 95.4 3.5 7.6E-05 41.7 22.6 112 203-343 145-257 (765)
423 PF10313 DUF2415: Uncharacteri 95.4 0.075 1.6E-06 30.2 5.0 32 67-98 1-34 (43)
424 PF10313 DUF2415: Uncharacteri 95.4 0.12 2.5E-06 29.5 5.7 32 204-235 1-34 (43)
425 PF14870 PSII_BNR: Photosynthe 95.4 1.7 3.7E-05 37.9 18.8 155 65-231 143-301 (302)
426 COG3490 Uncharacterized protei 95.3 1.5 3.2E-05 37.0 19.1 187 204-390 68-288 (366)
427 PHA02790 Kelch-like protein; P 95.2 0.78 1.7E-05 43.4 14.3 171 184-364 288-472 (480)
428 PF10647 Gmad1: Lipoprotein Lp 95.2 1.8 3.9E-05 36.9 22.5 162 111-319 25-197 (253)
429 KOG3630 Nuclear pore complex, 95.1 0.6 1.3E-05 47.0 13.2 141 165-306 102-260 (1405)
430 KOG1983 Tomosyn and related SN 94.9 0.96 2.1E-05 46.6 14.8 72 288-366 197-268 (993)
431 PF03022 MRJP: Major royal jel 94.9 2.4 5.1E-05 37.0 21.3 166 184-350 35-253 (287)
432 PRK10115 protease 2; Provision 94.9 4.6 0.0001 40.2 24.1 192 167-362 130-344 (686)
433 COG5167 VID27 Protein involved 94.9 0.78 1.7E-05 42.0 12.3 148 211-362 474-632 (776)
434 KOG2247 WD40 repeat-containing 94.7 0.0071 1.5E-07 54.1 -0.6 143 206-354 37-180 (615)
435 PF12234 Rav1p_C: RAVE protein 94.7 2 4.2E-05 41.5 15.2 101 260-362 43-156 (631)
436 PF14870 PSII_BNR: Photosynthe 94.5 3.1 6.6E-05 36.4 24.9 152 202-359 143-301 (302)
437 PF07569 Hira: TUP1-like enhan 94.4 0.42 9.1E-06 39.6 9.2 68 297-365 18-98 (219)
438 PHA02790 Kelch-like protein; P 94.2 3.8 8.2E-05 38.9 16.4 60 80-141 273-341 (480)
439 TIGR02604 Piru_Ver_Nterm putat 94.1 4.5 9.8E-05 36.8 23.2 138 111-260 15-198 (367)
440 KOG2280 Vacuolar assembly/sort 94.1 5.1 0.00011 38.9 16.2 180 184-371 65-255 (829)
441 PF14727 PHTB1_N: PTHB1 N-term 94.0 5 0.00011 36.9 17.7 193 80-277 146-361 (418)
442 KOG2377 Uncharacterized conser 94.0 1.2 2.6E-05 40.2 11.3 81 280-362 57-140 (657)
443 KOG1916 Nuclear protein, conta 93.9 0.061 1.3E-06 52.1 3.6 78 61-140 127-214 (1283)
444 KOG2247 WD40 repeat-containing 93.7 0.014 3E-07 52.3 -0.8 149 66-231 34-185 (615)
445 PF08728 CRT10: CRT10; InterP 93.7 4 8.6E-05 40.0 15.1 74 289-362 163-246 (717)
446 KOG4460 Nuclear pore complex, 93.4 3.2 7E-05 38.3 13.1 96 205-324 105-203 (741)
447 PRK13684 Ycf48-like protein; P 93.2 5.9 0.00013 35.5 18.0 150 66-232 172-329 (334)
448 PF08801 Nucleoporin_N: Nup133 93.2 3.6 7.8E-05 38.4 14.1 31 333-363 190-220 (422)
449 PF14761 HPS3_N: Hermansky-Pud 93.0 4.2 9.2E-05 33.1 13.4 107 257-366 27-167 (215)
450 KOG4460 Nuclear pore complex, 92.9 3.4 7.3E-05 38.2 12.5 33 205-237 167-201 (741)
451 PF07569 Hira: TUP1-like enhan 92.6 0.97 2.1E-05 37.5 8.5 64 76-141 20-97 (219)
452 KOG1900 Nuclear pore complex, 92.0 2.6 5.5E-05 43.5 11.8 171 58-236 71-274 (1311)
453 COG5167 VID27 Protein involved 92.0 2.2 4.7E-05 39.2 10.3 141 82-234 483-632 (776)
454 KOG1900 Nuclear pore complex, 92.0 3.9 8.4E-05 42.3 12.9 153 173-363 89-273 (1311)
455 PF14781 BBS2_N: Ciliary BBSom 91.9 4.1 8.8E-05 30.3 13.2 115 115-236 4-127 (136)
456 PF07250 Glyoxal_oxid_N: Glyox 91.7 4.8 0.0001 33.8 11.5 140 185-327 48-205 (243)
457 COG4590 ABC-type uncharacteriz 91.7 0.84 1.8E-05 41.1 7.3 239 78-323 126-390 (733)
458 KOG1916 Nuclear protein, conta 91.6 0.14 3.1E-06 49.8 2.8 69 69-139 183-265 (1283)
459 TIGR02276 beta_rpt_yvtn 40-res 91.5 0.84 1.8E-05 25.9 5.1 40 213-252 1-40 (42)
460 PF12657 TFIIIC_delta: Transcr 91.3 2.1 4.6E-05 34.0 8.9 72 165-236 6-123 (173)
461 KOG2377 Uncharacterized conser 91.2 7 0.00015 35.6 12.3 122 107-236 64-187 (657)
462 PF14655 RAB3GAP2_N: Rab3 GTPa 91.1 3.4 7.4E-05 37.8 10.8 83 59-142 300-401 (415)
463 COG5290 IkappaB kinase complex 91.1 1.8 3.9E-05 42.0 9.2 101 113-223 250-356 (1243)
464 COG4257 Vgb Streptogramin lyas 91.0 8.9 0.00019 32.5 18.2 231 111-364 63-307 (353)
465 PF08801 Nucleoporin_N: Nup133 90.7 14 0.00031 34.4 17.0 31 290-320 190-220 (422)
466 TIGR03548 mutarot_permut cycli 90.6 7.9 0.00017 34.5 12.8 95 257-354 123-234 (323)
467 PF10433 MMS1_N: Mono-function 90.5 17 0.00037 34.9 26.5 287 67-362 44-388 (504)
468 COG3292 Predicted periplasmic 90.4 16 0.00035 34.5 17.4 282 66-369 164-453 (671)
469 PF11715 Nup160: Nucleoporin N 90.3 1.2 2.6E-05 43.2 7.8 72 299-370 156-256 (547)
470 TIGR03547 muta_rot_YjhT mutatr 90.2 14 0.0003 33.4 15.5 41 312-353 291-331 (346)
471 TIGR03548 mutarot_permut cycli 90.1 13 0.00029 33.1 14.1 61 217-277 125-195 (323)
472 PLN00033 photosystem II stabil 90.1 15 0.00033 33.7 17.0 151 66-231 238-396 (398)
473 PF03088 Str_synth: Strictosid 89.5 3.1 6.6E-05 28.6 7.1 56 293-350 1-74 (89)
474 TIGR02276 beta_rpt_yvtn 40-res 89.4 2.4 5.1E-05 23.9 5.8 41 76-117 1-41 (42)
475 PLN02153 epithiospecifier prot 89.0 17 0.00037 32.7 16.3 20 217-236 87-111 (341)
476 PRK14131 N-acetylneuraminic ac 88.8 19 0.00041 33.0 18.1 40 313-353 314-353 (376)
477 KOG1898 Splicing factor 3b, su 88.7 31 0.00067 35.4 16.4 108 209-319 939-1048(1205)
478 PF12657 TFIIIC_delta: Transcr 88.3 5.6 0.00012 31.6 9.0 31 290-320 86-122 (173)
479 PF07995 GSDH: Glucose / Sorbo 88.0 18 0.00039 32.4 13.0 26 205-232 3-28 (331)
480 COG5276 Uncharacterized conser 87.9 17 0.00036 31.3 24.6 195 108-322 85-288 (370)
481 KOG2063 Vacuolar assembly/sort 87.8 34 0.00074 34.8 17.6 77 118-195 23-100 (877)
482 COG4257 Vgb Streptogramin lyas 87.7 16 0.00035 31.0 21.7 234 67-322 62-308 (353)
483 COG5290 IkappaB kinase complex 87.5 22 0.00048 35.1 13.3 97 246-344 247-348 (1243)
484 KOG2109 WD40 repeat protein [G 87.0 6.9 0.00015 37.4 9.7 48 91-138 297-345 (788)
485 PF12768 Rax2: Cortical protei 86.8 14 0.00031 32.0 11.1 56 88-143 15-76 (281)
486 PF07676 PD40: WD40-like Beta 86.8 3 6.5E-05 23.1 5.0 31 64-94 6-38 (39)
487 PLN02153 epithiospecifier prot 86.6 24 0.00052 31.8 17.3 24 300-323 251-288 (341)
488 PF12768 Rax2: Cortical protei 86.5 15 0.00033 31.8 11.1 115 183-298 16-145 (281)
489 PF11715 Nup160: Nucleoporin N 85.7 4.9 0.00011 39.0 8.9 36 291-326 216-255 (547)
490 COG3823 Glutamine cyclotransfe 85.6 18 0.00038 29.4 13.4 66 80-145 57-125 (262)
491 PF14781 BBS2_N: Ciliary BBSom 85.1 14 0.0003 27.6 12.8 113 210-326 5-132 (136)
492 PF05787 DUF839: Bacterial pro 85.1 12 0.00027 35.8 10.8 59 292-350 438-519 (524)
493 PF07250 Glyoxal_oxid_N: Glyox 84.7 10 0.00022 31.9 9.0 124 73-201 73-207 (243)
494 PF10433 MMS1_N: Mono-function 84.2 41 0.00088 32.3 24.3 250 75-342 219-503 (504)
495 PLN02193 nitrile-specifier pro 84.0 40 0.00086 32.1 16.3 64 300-365 328-413 (470)
496 PF13449 Phytase-like: Esteras 83.6 32 0.0007 30.7 20.3 153 65-220 18-230 (326)
497 KOG1898 Splicing factor 3b, su 83.6 58 0.0012 33.6 18.6 173 185-362 855-1048(1205)
498 KOG3616 Selective LIM binding 82.9 4.1 9E-05 39.4 6.5 68 290-361 15-82 (1636)
499 PF07676 PD40: WD40-like Beta 82.2 6.5 0.00014 21.7 5.2 29 203-231 8-38 (39)
500 TIGR03606 non_repeat_PQQ dehyd 82.0 45 0.00098 31.3 15.2 122 196-354 22-167 (454)
No 1
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-78 Score=489.78 Aligned_cols=433 Identities=56% Similarity=0.983 Sum_probs=418.3
Q ss_pred CeEeEEecCCcccccccccccccccccCCCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcc
Q 012994 1 MKVKVISRSTDEFTRERSQDLQRVYHNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLK 80 (452)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 80 (452)
||||+|.++|+++++++..+.++.+||++|.+||++.+.+|.+++++.++.++|+.||+..|.||.++|.|++-+|....
T Consensus 1 MKik~I~r~p~~y~~e~~~~~~~~~rn~dp~lhPfe~~rEy~RALNAtKleR~fakPFv~~L~gHrdGV~~lakhp~~ls 80 (433)
T KOG0268|consen 1 MKVKTISRNPDNYVRETKLDLQRVPRNYDPALHPFERAREYTRALNATKLERVFAKPFVGSLDGHRDGVSCLAKHPNKLS 80 (433)
T ss_pred CceeEeecCcccccchhhhcccccccccCCcCChhhhHHHHHHHhhhHHHHHHhhccchhhccccccccchhhcCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999777
Q ss_pred eEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEE
Q 012994 81 GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY 160 (452)
Q Consensus 81 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 160 (452)
.+++|+.||.|+|||+...++...+.+|.+.|..|++.. ..+++++.|.+|+.|-++. .+...+
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~--------------~p~~ti 144 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG--------------PPLHTI 144 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC--------------Ccceee
Confidence 899999999999999999999999999999999999986 5789999999999999863 366777
Q ss_pred EecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce
Q 012994 161 VWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR 240 (452)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (452)
.....+..++.+..+..++++|.+|.|||.....++..+....+.|.++.|+|....+|++|+.|+.|.+||+++..++.
T Consensus 145 lg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~ 224 (433)
T KOG0268|consen 145 LGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK 224 (433)
T ss_pred eccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc
Confidence 77888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.+......+.++|+| ....|+++++|..++.||++.+..+.....+|.+.|.++.|||.|+-+++||.|.+|+||.++.
T Consensus 225 KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 225 KVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred eeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCC
Confidence 999999999999999 8888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccC
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH 400 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (452)
+.....++......|.++.||.|.+|+++|++|+.|++|.....+.++.+.+++...++|.+.++++|.|.++|++|+.|
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~peIkRIarH 383 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLPEIKRIARH 383 (433)
T ss_pred CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcHHHHHHHhh
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccccccceeeeeC
Q 012994 401 RHLPKPIYKAASLRRTMMEAERRKAERRKAHSAPGSIVTEPVRKRRIIKEVE 452 (452)
Q Consensus 401 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 452 (452)
..+|+.++.+...++...++++|+|.++++++++ ++..+||+|.+++++|
T Consensus 384 R~lPk~i~~a~ki~r~~~~s~~rrea~~~~~~~~--~~y~~~~kk~vv~~~~ 433 (433)
T KOG0268|consen 384 RHLPKPIKKAQKIKRTVNDSERRREANRRRHSKP--VPYAPERKKHIVGEVE 433 (433)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcchhhcceeeeecC
Confidence 9999999999999999999999999999999998 8999999999999876
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-52 Score=341.77 Aligned_cols=318 Identities=19% Similarity=0.350 Sum_probs=275.4
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
+...+.||.++|.|++|+|+| ..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eccccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 456789999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-----CCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-----EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
..+++... .....+...|.+++|.| ....+++++ |+++|||+..+..+..+.+|..+|+|+.
T Consensus 186 pktg~~~g-----------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 186 PKTGQQIG-----------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVR 254 (480)
T ss_pred CCCCCccc-----------ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEE
Confidence 98886432 23344566778888764 567888876 6799999999999999999999999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEE-----------ccCC---------------------
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISW-----------NPME--------------------- 257 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~-----------~~~~--------------------- 257 (452)
|..+ .++++|+.|++|++|+...+...+.+..+ ..++.++. .|.+
T Consensus 255 wGG~--gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 WGGE--GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred EcCC--ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 9854 58999999999999999887776665532 22333332 2322
Q ss_pred ---CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCc
Q 012994 258 ---PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 334 (452)
Q Consensus 258 ---~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 334 (452)
...+++|+.|..+++|+.....++...+.+|..-|+.+.||||++++|+++.|..|++||.++|+.+..+.. |.+.
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG-Hv~~ 411 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG-HVAA 411 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh-ccce
Confidence 236999999999999999998888888999999999999999999999999999999999999999988854 4589
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 335 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
|..++|+.|.++|++|+.|.++++|++.+.++...+. +|..+|..+.|.|+-....
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp-----------------Gh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP-----------------GHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC-----------------CCCceEEEEEecCCCceee
Confidence 9999999999999999999999999999988766554 6788888999998866443
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-46 Score=306.97 Aligned_cols=313 Identities=23% Similarity=0.334 Sum_probs=269.1
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE-EEeecCC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQ 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~h~ 109 (452)
.|.|.+...........+++|+..+.....+.+||...|.|++|+||| ..||+|+.||+|++||..+|+++ ..+.+|.
T Consensus 122 ~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 122 QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-chhhccccCCeEEEecCCCCCcccccccCcc
Confidence 366667777778888899999999999999999999999999999999 99999999999999999998764 5689999
Q ss_pred CCeeEEEEcc-----CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--
Q 012994 110 GAVRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (452)
Q Consensus 110 ~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (452)
..|++++|.| ..++||+++.||+|+|||+..+. .......+..+++|+.|-.+|. +++++
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~------------~~~~lsgHT~~VTCvrwGG~gl-iySgS~D 267 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT------------CVRTLSGHTASVTCVRWGGEGL-IYSGSQD 267 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCce------------EEEEeccCccceEEEEEcCCce-EEecCCC
Confidence 9999999976 56799999999999999997763 4455667788899999987774 44444
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECC-----------C------------------------CCcEEEEEecCCe
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNP-----------A------------------------EPNVLATTASDRS 227 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-----------~------------------------~~~~l~~~~~dg~ 227 (452)
++|++|+...+.....+++|...|+.++.+. . ++..|++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 6899999999999999999999999998872 1 2235999999999
Q ss_pred EEEEEccCCC-CceEE-EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEE
Q 012994 228 ITLYDLRMSS-PARKV-IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 228 i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
+.+|+....+ ++... .+...++.+.|+|++.+ +++++-|..+++||.++.+.. ..+.+|..+|+.++||.|.++|+
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaSFDkSVkLW~g~tGk~l-asfRGHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-IASASFDKSVKLWDGRTGKFL-ASFRGHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccE-EEEeecccceeeeeCCCcchh-hhhhhccceeEEEEeccCccEEE
Confidence 9999976554 44333 34566789999999876 899999999999999986544 45669999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
+|+.|.++++||+++.+...-+. +|...|.++.|+|||..+++|+.|..+++|.
T Consensus 426 S~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999988766664 4558899999999999999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2e-45 Score=304.02 Aligned_cols=282 Identities=22% Similarity=0.307 Sum_probs=255.6
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~ 139 (452)
=-|-+.+|..+.|++++ ..|+|||.+|.++||+..+...+++|.+|.+.|.++.|+|. +..||||+.||++++|++.
T Consensus 171 Q~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hccCCCcceeeEeecCC-CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 35678899999999998 99999999999999999999999999999999999999995 6689999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+...+ .....+...|..++|+|+|+++++++ .+-++||+.++..+....+|...|.+++|+|+| .
T Consensus 250 ~e~~l------------~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG-S 316 (459)
T KOG0272|consen 250 QETPL------------QDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG-S 316 (459)
T ss_pred CCcch------------hhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC-c
Confidence 76332 33344567788999999999999997 579999999999999999999999999999999 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
++++|+.|..-+|||++++.++..+.. ...+..+.|+|+|- .+++|+.|+++++||++.... ...+.+|.+-|+.+.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk 394 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVK 394 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc-ceecccccchhhheE
Confidence 999999999999999999999988874 45778999999875 499999999999999998766 567779999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 297 YSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 297 ~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
|+| .|.+|+|++.|++++||...+..++..+. +|.+.|.++..++|+++++|++.|.++++|.
T Consensus 395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ecccCCeEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999 78899999999999999999999988875 4558999999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-42 Score=271.94 Aligned_cols=293 Identities=20% Similarity=0.322 Sum_probs=252.9
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
.++|+||.+.|.++.|++|. +++++++.||.+.|||.-+...++.+.-....|..++|+|.|+++|.|+-|+...||++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred EEEecccccceeeeEecCCc-CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 47899999999999999998 99999999999999999999988888888899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
.+...... .........+.+-+.++.|-+|+.++...| .+..+||+++++.+..|.+|.+.|.++.++|..++
T Consensus 127 s~~d~~g~------~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 127 STRDAEGN------VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccccccc------ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 75421110 011222445666777888888766655544 46999999999999999999999999999996669
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee-eCcccceEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH-MGHESAVMDI 295 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~v~~~ 295 (452)
.+++|+.|+..++||++.+...+.+.. ...++++.|.|++.. |++|++|+.+++||++...+..... ..-..+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDA-FATGSDDATCRLYDLRADQELAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCe-eeecCCCceeEEEeecCCcEEeeeccCcccCCceeE
Confidence 999999999999999999999998874 567899999999876 9999999999999999866554433 2334689999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
+||..|++|++|..|..+.+||.-.++....+. +|...|+++..+|||.-|+||+.|..++||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999998888777664 5668999999999999999999999999994
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.8e-44 Score=295.44 Aligned_cols=272 Identities=24% Similarity=0.375 Sum_probs=244.6
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCC-CcceEEEeeCCCcEEEEeCCCCceEEEeecCCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (452)
+.++........-...+++|+....+.+.+|.||++.|.++.|+|. ....+|||+.||++++|++++..++..+.+|..
T Consensus 183 fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~ 262 (459)
T KOG0272|consen 183 FSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLA 262 (459)
T ss_pred eecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchh
Confidence 4444555555555567789999999999999999999999999998 336899999999999999999899999999999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIW 188 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~ 188 (452)
.|..++|+|+|++|+|++.|.+-++||+.++ ........+...+.+++|+++|.+++++|- .-+||
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk------------~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETK------------SELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccc------------hhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 9999999999999999999999999999988 355556667789999999999999999984 48999
Q ss_pred eCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCC
Q 012994 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
|++++..+..+.+|...|.++.|+|+| ..+++|+.|++++|||++....+..+.. ..-++.+.|.|..+.++++++.|
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 999999999999999999999999999 8999999999999999999998877764 45668999999999999999999
Q ss_pred CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
+++.+|...+..... .+.||.+.|.++.+++++.+++|++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~k-sLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLK-SLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccch-hhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999998876544 5569999999999999999999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=261.71 Aligned_cols=290 Identities=18% Similarity=0.316 Sum_probs=246.3
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-----CceEEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
.+..+|.||++.|+.++..+.+...+++++.|.++.+|++.. |.+++.+.||...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345688999999999999999878999999999999998754 567889999999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC-CCceEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG-TDTVIS 208 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~-~~~i~~ 208 (452)
++++||+.++ ........+...+.+++++++...+++++ .++.+|+............. .+-|.|
T Consensus 86 ~lrlWDl~~g------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 86 TLRLWDLATG------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSC 153 (315)
T ss_pred eEEEEEecCC------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEE
Confidence 9999999887 35566677888999999999999999998 46999998876655554443 789999
Q ss_pred EEECCCC-CcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 209 VRFNPAE-PNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 209 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
++|+|+. ..++++++.|++|++||+++.+....+.. ....+.++++|+|.. .++|+.+|.+.+||++..+.. ...
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-casGgkdg~~~LwdL~~~k~l--ysl 230 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-CASGGKDGEAMLWDLNEGKNL--YSL 230 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE-EecCCCCceEEEEEccCCcee--Eec
Confidence 9999984 46899999999999999999888777654 556789999999976 778999999999999987763 334
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC--------cCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRL 358 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~i~i 358 (452)
+|...|.+++|+|+...|+.+. +..|+|||+.++..+..+.... .....+++|++||+.|++|-.|+.|++
T Consensus 231 ~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 7889999999999977776665 5559999999988776653222 123578999999999999999999999
Q ss_pred eecc
Q 012994 359 WKAK 362 (452)
Q Consensus 359 w~~~ 362 (452)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-40 Score=255.17 Aligned_cols=281 Identities=23% Similarity=0.355 Sum_probs=240.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
-+|+++|.|.+|++|...+|.+..+++...+.|+.+...|+++.||+++. ..|++||++++.. .++..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-----------~Pv~t 78 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-----------NPVAT 78 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----------CceeE
Confidence 68999999999999999999999999988889999999999999999886 4899999988752 35555
Q ss_pred EE-ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 160 YV-WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 160 ~~-~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
+. +...+.++.|..+|+.+++++ |.++|||++.....+.++ +..+|+++..+|+. ..|++|..+|.|++||+...
T Consensus 79 ~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 79 FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc-ceEEeecCCCcEEEEEccCC
Confidence 44 458999999999999999998 689999999976666665 46999999999987 67889999999999999988
Q ss_pred CCceEEEee--cccceEEEccCCCceEEeecCCCeEEEEeCCCcc-----ccceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 237 SPARKVIMR--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-----EAKCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 237 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
.....+... ..+.++...|++.. ++++...|.+++|++-... .+...+..|.+.+..+.+|||+++||+++.
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss 235 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS 235 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC
Confidence 776666543 45678889999876 7788899999999986532 234446689999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhh
Q 012994 310 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 375 (452)
|.+++||+.++.-.......+|..+++.++||.||+||+||+.|+.+++|++..++.+....++.+
T Consensus 236 dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 236 DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 999999999987444444566668999999999999999999999999999999998887776543
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.1e-40 Score=278.20 Aligned_cols=316 Identities=17% Similarity=0.303 Sum_probs=252.6
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee---cCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 134 (452)
|-.+++.|..-|+|+.|+||| .+++|.+.||+|.+||-.+++.+..+. +|.+.|.+++|+||++.++|++.|.+++
T Consensus 182 Fk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEE
Confidence 556789999999999999999 999999999999999999999999997 8999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
|||+.+.++...+...... ......+-|..+..+.++.+|.+.+++.....++..+.+|...|+++..+|+
T Consensus 261 IWdVs~~slv~t~~~~~~v---------~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTV---------EDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EEEeeccceEEEeecCCch---------hceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 9999988665544332221 1112233444444455556799999999999999999999999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceE-------------------------------E---------------------
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARK-------------------------------V--------------------- 242 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~-------------------------------~--------------------- 242 (452)
+ ..|++|+.||.|.-||..++..-+. +
T Consensus 332 ~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 332 G-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred C-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence 8 8999999999999999654321100 0
Q ss_pred ------------------------------EeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-ccceeeeCcccc
Q 012994 243 ------------------------------IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAKCVHMGHESA 291 (452)
Q Consensus 243 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~ 291 (452)
.......+++.+|++.. +++|+.|+.+++|.+.... ........|.++
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~-vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE-VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE-EEEecccceEEEEEecCCcccceeeeecccCC
Confidence 00112234555666554 8889999999999998755 333356689999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
|++++||||+.+||+|...+.+.+||+.+.......-..|...|.+++|+|+..+++||+.|-+|.||+++.....-.+.
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence 99999999999999999999999999999877544445566899999999999999999999999999998654432221
Q ss_pred hhhhhhhHHHHHHHHhhccCccccccccCC
Q 012994 372 PREQRKHAYHEAVKNRYKHLPEIKRIVRHR 401 (452)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (452)
-+|...++.+.|.-
T Consensus 570 ----------------nAH~~gVn~v~wld 583 (603)
T KOG0318|consen 570 ----------------NAHLGGVNSVAWLD 583 (603)
T ss_pred ----------------cccccCceeEEEec
Confidence 15666688888854
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=262.86 Aligned_cols=289 Identities=22% Similarity=0.353 Sum_probs=246.6
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC-CCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA-NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
.++..+.||.+.|+.+.|+|+| .+||||+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.|++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 3456789999999999999998 999999999999999954 33556778899999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
||++++ +.++.++.|...++++.-...+
T Consensus 117 wD~~tG----------------------------------------------------~~~rk~k~h~~~vNs~~p~rrg 144 (338)
T KOG0265|consen 117 WDAETG----------------------------------------------------KRIRKHKGHTSFVNSLDPSRRG 144 (338)
T ss_pred Eecccc----------------------------------------------------eeeehhccccceeeecCccccC
Confidence 998655 4577778889999999877778
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
+.++.+++.||++++||+++...++.+..+.+..++.|...+.. +.+|+-|+.|.+||++... ...+..||.++|+.+
T Consensus 145 ~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q-v~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~l 222 (338)
T KOG0265|consen 145 PQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ-VISGGIDNDIKVWDLRKND-GLYTLSGHADTITGL 222 (338)
T ss_pred CeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccc-eeeccccCceeeeccccCc-ceEEeecccCceeeE
Confidence 88999999999999999999999999988889999999887766 7888999999999998754 445677999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC----ceeeeeccCC---cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGG----RSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
..+|+|.++.+-+.|.++++||++.. +++..+..+. ......++|+|++.++.+|+.|..+++||......+.
T Consensus 223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEE
Confidence 99999999999999999999999753 3344443321 2346778999999999999999999999998877766
Q ss_pred cCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHHHHHH
Q 012994 369 VLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRRTMM 418 (452)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (452)
.+. +|.+.|+.+.|||..|-++ .++.++.+++
T Consensus 303 klp-----------------Gh~gsvn~~~Fhp~e~iil-s~~sdk~i~l 334 (338)
T KOG0265|consen 303 KLP-----------------GHYGSVNEVDFHPTEPIIL-SCSSDKTIYL 334 (338)
T ss_pred EcC-----------------CcceeEEEeeecCCCcEEE-EeccCceeEe
Confidence 664 8899999999999999655 5555555443
No 11
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=280.17 Aligned_cols=291 Identities=19% Similarity=0.385 Sum_probs=250.3
Q ss_pred hhccccccccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCC-CceEEEeecCCCCeeEEEEccCCCeEEEEeCC
Q 012994 53 IFARPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 53 ~~~~~~~~~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 130 (452)
..+..++.++.||+..|+++.|.| .+ .+|++|+.|+.|+||++-. +++++++.+|..+|.+++|+++|..++|++.|
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~-hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD 279 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKG-HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD 279 (503)
T ss_pred eccHhheeeccCCccccchhhhcccee-eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc
Confidence 346678899999999999999999 55 9999999999999999876 88999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC-CeEEEeC--CeEEEEeCCCCCcceecccCCCceE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVI 207 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (452)
+.|++||+++| .....+.......++.++|++ +.+++++ +.|+.||+++++.++.+..|-+.|.
T Consensus 280 ~~lKlwDtETG-------------~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~ 346 (503)
T KOG0282|consen 280 RFLKLWDTETG-------------QVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL 346 (503)
T ss_pred eeeeeeccccc-------------eEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence 99999999998 445556667778899999999 6677665 5799999999999999999999999
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec--ccceEEEccCCCceEEeecCCCeEEEEeCCCccc--cce
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT--KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE--AKC 283 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~ 283 (452)
.+.|-+++ ..+++.+.|+.++||+.+..-.+..+.... ...++..+|+++. +++-+.++.+.+|.+..... ...
T Consensus 347 ~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~-~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 347 DITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW-FAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred eeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe-ehhhccCceEEEEecccccccCHhh
Confidence 99999988 788899999999999999887776655433 3457888888876 77888899999998654322 233
Q ss_pred eeeCccc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC-CCEEEEeeCCCcEEEee
Q 012994 284 VHMGHES--AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-ASYVISGSDDTNLRLWK 360 (452)
Q Consensus 284 ~~~~~~~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~ 360 (452)
.+.+|.. .-..+.|||||.+|++|+.||.+.+||.++-+.+..+..+ .+++..+.|+|. ...+||++.||.|++|+
T Consensus 425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence 4556653 4677899999999999999999999999998888887666 589999999994 45799999999999996
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-38 Score=266.94 Aligned_cols=318 Identities=17% Similarity=0.326 Sum_probs=256.1
Q ss_pred cCCCCCCchhh-hhhhHhhhhHHHhhhhhc--ccccc--cc------cc----ccccEEEEEeCCCCcceEEEeeCCCcE
Q 012994 27 NYDPNLRPQEK-AVEYVRALTAAKLEKIFA--RPFIG--AL------DG----HRDGISCMAKNPNYLKGFFSGSMDGDI 91 (452)
Q Consensus 27 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~--~l------~~----h~~~V~~~~~~~~~~~~l~tg~~dg~i 91 (452)
.+-..+.|... ..++.......++|++.. ..... .| .+ .+..|++++|+.+| .+||+|+.||.+
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-~~LatG~~~G~~ 259 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-TLLATGSEDGEA 259 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC-CeEEEeecCcEE
Confidence 34455677666 556666666667777653 11100 11 12 24689999999999 999999999999
Q ss_pred EEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee
Q 012994 92 RLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH 171 (452)
Q Consensus 92 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (452)
++|+. +|.++.++..|.++|.++.|+..|+||++++.||++.+||..++.....+.. +..+...+.|
T Consensus 260 riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~------------~s~~~lDVdW 326 (524)
T KOG0273|consen 260 RIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF------------HSAPALDVDW 326 (524)
T ss_pred EEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee------------ccCCccceEE
Confidence 99996 6788889999999999999999999999999999999999987744322222 2222245666
Q ss_pred cCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccc
Q 012994 172 QWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSN 249 (452)
Q Consensus 172 ~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~ 249 (452)
..+..+..+.. +.++++.+....|+.++.+|.+.|.++.|+|.+ .+|++++.|++++||.+........+.. ...+.
T Consensus 327 ~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~ 405 (524)
T KOG0273|consen 327 QSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIY 405 (524)
T ss_pred ecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCcchhhhhhhcccee
Confidence 66655554443 679999999999999999999999999999998 8999999999999999887776666543 34556
Q ss_pred eEEEccCC--------CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 250 SISWNPME--------PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 250 ~~~~~~~~--------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
.+.|+|.+ ...+++++.|+.+++||........ .+..|..+|.+++|||+|+++|+|+.||.|.+|++.++
T Consensus 406 t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~-~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 406 TIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH-TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred eEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE-eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 66666654 5678999999999999998765544 46689999999999999999999999999999999999
Q ss_pred ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 322 RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 322 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
+....+... +.|..++|+.+|.+|..+-.||.+++.|+.
T Consensus 485 ~l~~s~~~~--~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 KLVKSYQGT--GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred heeEeecCC--CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 998888655 679999999999999999999999998874
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.5e-39 Score=287.72 Aligned_cols=253 Identities=26% Similarity=0.505 Sum_probs=223.9
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-------------------------------ceEEEe
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------------------------------RTVCQY 105 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-------------------------------~~~~~~ 105 (452)
-+..++..-...++|..|++++ .+||.|..|..|++|.+... ....++
T Consensus 369 ic~YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe
Confidence 3566777677899999999998 89999999999999987621 123447
Q ss_pred ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--
Q 012994 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-- 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (452)
.+|.++|..+.|+|+.++|++|+.|+++++|.+.+.. ..+....+..+++.+.|+|.|.+|+++++
T Consensus 448 ~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s------------~~V~y~GH~~PVwdV~F~P~GyYFatas~D~ 515 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS------------CLVIYKGHLAPVWDVQFAPRGYYFATASHDQ 515 (707)
T ss_pred ecCCCceeeeeecccccceeeccCCcceeeeecccce------------eEEEecCCCcceeeEEecCCceEEEecCCCc
Confidence 7999999999999999999999999999999998873 44445567789999999999999999985
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (452)
+.++|......+++.+.+|.+.|.|+.|+|+. +++++|+.|.+|++||+.++..++.
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~~VRi---------------------- 572 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGNSVRI---------------------- 572 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCcEEEE----------------------
Confidence 59999999999999999999999999999988 8999999999999999988766543
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
+.||.++|++++|||+|++|++|+.||.|.+||+.+++.+..+..+ .+.|.++.||.|
T Consensus 573 ---------------------F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~d 630 (707)
T KOG0263|consen 573 ---------------------FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRD 630 (707)
T ss_pred ---------------------ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecC
Confidence 3489999999999999999999999999999999999998888666 689999999999
Q ss_pred CCEEEEeeCCCcEEEeeccccccc
Q 012994 344 ASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 344 ~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
|..|++||.|.+|++||+..-...
T Consensus 631 g~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999998754443
No 14
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.1e-38 Score=254.20 Aligned_cols=288 Identities=16% Similarity=0.205 Sum_probs=242.2
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.-+.+|..|++.|++++.+|+. ++++||+.|..-.+|++.+++....+.+|...|+++.|+.+|.+||||+.+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3456899999999999999976 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
...++... ......-..+.-+.|+|.+.++++++ |.+-+|.+.+....+.+.+|..++++=.|.|+
T Consensus 134 ~~stg~~~------------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd 201 (399)
T KOG0296|consen 134 KVSTGGEQ------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD 201 (399)
T ss_pred EcccCceE------------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC
Confidence 99887432 22223445666789999999999887 67999999998889999999999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEeec------------------------------------------------
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRT------------------------------------------------ 246 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------------ 246 (452)
| ..++++..||+|++|++.+++++..+....
T Consensus 202 G-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 202 G-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred C-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 8 688899999999999999988776654100
Q ss_pred ----ccceEEEccCCC--ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 247 ----KSNSISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 247 ----~~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
...++.+.|... -++++|+-||.|.+||+...... ....|..+|+.+.|-+ ..+|++++.+|.|+.||.++
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R--~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR--HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDART 357 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhh--eeccCCCceEEEEEcC-cchheeeccCceEEeeeccc
Confidence 001111112111 24677888999999999875433 3337888999999998 68999999999999999999
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
|++...+..+ ..+|.+++++|+.++++|+|.|++.+||+..
T Consensus 358 G~l~~~y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 358 GQLKFTYTGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cceEEEEecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999888654 4889999999999999999999999999864
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=268.86 Aligned_cols=282 Identities=17% Similarity=0.310 Sum_probs=246.7
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
-..+|..+.|.|+| +.|++|+..|.+.+|+..+......+++|..+|.++.|++++.+++||+.+|.|++|+..-...
T Consensus 95 vkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV- 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV- 172 (464)
T ss_pred cccceeeEEEcCCC-ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-
Confidence 34589999999999 9999999999999999866555556789999999999999999999999999999999864421
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
......+...|.+++|+|+...|++++ +.|+|||....+....+.+|.-.|.+++|+|.. .++++|
T Consensus 173 -----------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasg 240 (464)
T KOG0284|consen 173 -----------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASG 240 (464)
T ss_pred -----------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEc
Confidence 111122346889999999888888876 679999999999999999999999999999987 799999
Q ss_pred ecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC-C
Q 012994 223 ASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-T 300 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~-~ 300 (452)
+.|..|++||.+++.++.++. +...+..+.|++++ ..+++++.|..+.+||++..++.. .+.+|...|+++.|+| .
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~-~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELF-TYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHH-Hhhcchhhheeecccccc
Confidence 999999999999999988876 45667899999999 779999999999999999665544 4558999999999999 5
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
..+|.+|+.||.|..|.+...+.+......|...|++++|+|-|.+|++|+.|.++++|...
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 67899999999999999997778888888888999999999999999999999999999753
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-38 Score=279.37 Aligned_cols=347 Identities=21% Similarity=0.288 Sum_probs=275.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhcccccccccc-ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~ 109 (452)
.+.|.+..+-+..-....++|.+..+.+++.+.+ |+++|.-++|+|.+ .++++|+.||.|+|||+..+.+.+.|+||.
T Consensus 69 ~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~g 147 (775)
T KOG0319|consen 69 ALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHG 147 (775)
T ss_pred eecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCC
Confidence 3555555554444455567888889999999998 99999999999999 999999999999999999999999999999
Q ss_pred CCeeEEEEccCCC--eEEEEeCCCcEEEEeCCCCCC-C------------------------------------------
Q 012994 110 GAVRGLTVSTDGR--ILVSCGTDCTVKLWNVPVATL-T------------------------------------------ 144 (452)
Q Consensus 110 ~~v~~l~~~~~~~--~l~s~~~dg~v~iwd~~~~~~-~------------------------------------------ 144 (452)
+.|.++.|+|+-. .|++|+.|+++++||+..... .
T Consensus 148 GvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l 227 (775)
T KOG0319|consen 148 GVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKL 227 (775)
T ss_pred ceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhh
Confidence 9999999998544 578888899999998732111 0
Q ss_pred ----------------------------------------------CCCCCCC---------------------------
Q 012994 145 ----------------------------------------------DSDDSTD--------------------------- 151 (452)
Q Consensus 145 ----------------------------------------------~~~~~~~--------------------------- 151 (452)
.......
T Consensus 228 ~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l 307 (775)
T KOG0319|consen 228 KTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFL 307 (775)
T ss_pred heechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEE
Confidence 0000000
Q ss_pred ----------------------------------------------CCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--
Q 012994 152 ----------------------------------------------NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-- 183 (452)
Q Consensus 152 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (452)
..........+...+.+++...+|.++++++.
T Consensus 308 ~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 308 YDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred EEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCc
Confidence 00000111112233455555566778888874
Q ss_pred eEEEEeCCCCC----cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce---E-------EEeecccc
Q 012994 184 QVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---K-------VIMRTKSN 249 (452)
Q Consensus 184 ~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~-------~~~~~~~~ 249 (452)
++++|.++.+. ++....+|.+.|.+++++..+..+|++++.|+++++|++...+... . ..+...++
T Consensus 388 svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 69999774433 4566778999999999998888999999999999999998732211 1 12456789
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 329 (452)
+++.+|+.. ++++|+.|.+..+|++.+ ......+.+|...|.++.|+|..+.++|+|.|++|+||.+.+..++.++.+
T Consensus 468 ~Vaia~ndk-LiAT~SqDktaKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG 545 (775)
T KOG0319|consen 468 CVAIAPNDK-LIATGSQDKTAKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG 545 (775)
T ss_pred ceEecCCCc-eEEecccccceeeecccC-ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC
Confidence 999999876 599999999999999994 455667789999999999999999999999999999999999999999865
Q ss_pred CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHH
Q 012994 330 KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYH 381 (452)
Q Consensus 330 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 381 (452)
+. ..|..+.|-.+|..|++++.||-|++|++++++++.++..|+++.+++.
T Consensus 546 H~-~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 546 HT-SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred cc-ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence 54 8899999999999999999999999999999999999999888887754
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=274.08 Aligned_cols=308 Identities=18% Similarity=0.313 Sum_probs=255.3
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
+...-+|+..+..++...+||...++|++++||| +++|||+.||.|+|||..++-+..++..|++.|+.+.|+..|+.+
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~l 407 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVL 407 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEE
Confidence 3345578888888999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC---eEEEEeCCCCCcceeccc
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~ 201 (452)
++.+-||+|+.||+...+.-.++..+ .+..+.+++..|.|.++.+++- .|.+|++.+|+.+..+.+
T Consensus 408 lssSLDGtVRAwDlkRYrNfRTft~P-----------~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 408 LSSSLDGTVRAWDLKRYRNFRTFTSP-----------EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred EEeecCCeEEeeeecccceeeeecCC-----------CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence 99999999999999876543333222 1234568888999999988884 599999999999999999
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE 280 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 280 (452)
|.++|.+++|+|.+ +.|++++.|.+|++||+-.. ....++.....+..++|.|+|.. +++++.||.|.+||.....+
T Consensus 477 HEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~e-laVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKE-LAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred CCCcceeeEEcccc-CeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCe-EEEEEecceEEEEEhhhcee
Confidence 99999999999998 79999999999999998654 46677788889999999999987 78889999999999875433
Q ss_pred ccee-------------------eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC-----------
Q 012994 281 AKCV-------------------HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK----------- 330 (452)
Q Consensus 281 ~~~~-------------------~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----------- 330 (452)
.-.+ ........+.+++|+||.+|++|+....|++||+.++-.+..+...
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~ef 634 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEF 634 (893)
T ss_pred eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHH
Confidence 2111 1123457899999999999999999999999998865433322100
Q ss_pred --------------------------------------------CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 331 --------------------------------------------RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 331 --------------------------------------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
..-.|+++.|+|.|+-++.++..| +.||.+.+.-.
T Consensus 635 ln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEG-l~IYsld~~~~ 713 (893)
T KOG0291|consen 635 LNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEG-LLIYSLDTTIL 713 (893)
T ss_pred hccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccc-eEEEecCCceE
Confidence 011478999999999999988876 67888866544
Q ss_pred c
Q 012994 367 L 367 (452)
Q Consensus 367 ~ 367 (452)
.
T Consensus 714 F 714 (893)
T KOG0291|consen 714 F 714 (893)
T ss_pred E
Confidence 3
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.1e-38 Score=253.83 Aligned_cols=289 Identities=21% Similarity=0.392 Sum_probs=247.7
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
.++.+.+.||.+.|.|+++.|.+ ..|+||+.|++|+|||+.++++..++.||-..|..+++|+-..||++++.|+.|+.
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 34667889999999999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
||++..+.+.. ...+-..+.+++.+|.-..+++++. .+++||+++...+..+.+|..+|.++.+.|
T Consensus 220 wDLe~nkvIR~------------YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 220 WDLEYNKVIRH------------YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQP 287 (460)
T ss_pred EechhhhhHHH------------hccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeec
Confidence 99988755433 3445678899999999999999985 599999999999999999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
.++ .+++|+.|++|++||++.++....+.. ...+.+++.+|.... |++ +....+..|++........ +.+|..-|
T Consensus 288 ~dp-qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~-fAS-as~dnik~w~~p~g~f~~n-lsgh~~ii 363 (460)
T KOG0285|consen 288 TDP-QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL-FAS-ASPDNIKQWKLPEGEFLQN-LSGHNAII 363 (460)
T ss_pred CCC-ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh-hhc-cCCccceeccCCccchhhc-ccccccee
Confidence 885 678999999999999999988777664 456678888887643 444 4445688898877655544 77999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec-------cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-------TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
++++...|| ++++|+.+|.+.+||.++|-..+... ......|++.+|...|..|++|..|.+|++|.-.
T Consensus 364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999998875 78899999999999999986654431 1123579999999999999999999999999754
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-38 Score=255.77 Aligned_cols=291 Identities=19% Similarity=0.335 Sum_probs=254.8
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
.++...+.||..+|+.+-|+|+- ..+++++.|++|++||..+++....+++|...|.+|+|+..|++|++++.|=.+++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 36778889999999999999997 88999999999999999999999999999999999999999999999999988999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
||..... ........+...+.++.+-|.|.++++++. .|+.|++.++.++..+.+|..-|..++.+.
T Consensus 177 Wd~~~~~-----------~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 177 WDFDTFF-----------RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred eeHHHHH-----------HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC
Confidence 9996531 122334456678889999999999999984 699999999999999999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccC--------------CCceEEeecCCCeEEEEeCCCc
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPM--------------EPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
+| .++++++.|.+|++|-+.+.++...+. +...+.+++|.|. +..++.+++.|+.|++||+.+.
T Consensus 246 DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 246 DG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred Ce-eEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 88 899999999999999999886655554 3455567776553 3357889999999999999987
Q ss_pred cccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 012994 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL 358 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 358 (452)
.. ...+.+|..+|..++|+|.|+||+++..|+++++||++++++..... .|..-++++.|+.+..+++||+-|..+++
T Consensus 325 ~c-L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 325 MC-LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred eE-EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeee
Confidence 44 44556999999999999999999999999999999999999998886 55578999999999999999999999999
Q ss_pred eec
Q 012994 359 WKA 361 (452)
Q Consensus 359 w~~ 361 (452)
|..
T Consensus 403 wEc 405 (406)
T KOG0295|consen 403 WEC 405 (406)
T ss_pred eec
Confidence 974
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=242.16 Aligned_cols=270 Identities=21% Similarity=0.305 Sum_probs=234.6
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA 181 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (452)
.+.+++|.+.|.++.|++|.++|++++.||.+.|||.-+. .+...+.....-|..++|+|.|++++++
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt------------nK~haipl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT------------NKVHAIPLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc------------cceeEEecCceeEEEEEECCCCCeEEec
Confidence 3788999999999999999999999999999999998766 3445555556678899999999999999
Q ss_pred C--CeEEEEeCCCC------CcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEE
Q 012994 182 G--AQVDIWNHNRS------QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSIS 252 (452)
Q Consensus 182 ~--~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~ 252 (452)
| +...||++.+. ...+.+.+|.+.+.|+.|.++ ..|++++.|.+..+||+++++....+. +.+.+.+++
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 8 56899998855 344678899999999999985 468899999999999999999988887 456778999
Q ss_pred EccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC-C
Q 012994 253 WNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-R 331 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 331 (452)
++|.....|++|+.|...++||++.. ...+.+.+|...|++++|.|+|.-+++|+.|++.++||++..+.+..+... .
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~ 272 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI 272 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc
Confidence 99988888999999999999999987 566778899999999999999999999999999999999999888887533 3
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCC
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 403 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
..+|++++||..|++|++|..|.++.+||.-.++.+..+. +|.+.|.++...|+-
T Consensus 273 ~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~-----------------GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 273 ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA-----------------GHENRVSCLGVSPDG 327 (343)
T ss_pred cCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee-----------------ccCCeeEEEEECCCC
Confidence 4689999999999999999999999999999999888775 556666666665553
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.2e-36 Score=263.78 Aligned_cols=285 Identities=26% Similarity=0.459 Sum_probs=243.6
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
+.++.+|.++|++++|+|++ ++|++++.||.|++|++.+++....+..|...+..+.|+|++++|++++.||.|.+||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 45788999999999999998 99999999999999999998888888999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
..+.. ......+...+.++.+++++.++++++ +.+.+||+.+++....+..|...+.++.|+|++
T Consensus 81 ~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 147 (289)
T cd00200 81 ETGEC------------VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG- 147 (289)
T ss_pred Ccccc------------eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC-
Confidence 86522 222334455788999999988888875 689999999988888888888999999999986
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeec-ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
.++++++.||.|++||++..+....+.... .+.++.|+|++..+ ++++.++.+.+||.+..... .....|...+.++
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~ 225 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKL-LSSSSDGTIKLWDLSTGKCL-GTLRGHENGVNSV 225 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEE-EEecCCCcEEEEECCCCcee-cchhhcCCceEEE
Confidence 678777779999999999888777766543 67899999998664 44555999999999874433 3334677899999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
+|+|++.++++++.||.|++||+.++.....+. .+...|.+++|+|++.+|++++.||.|++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999998899988889999999999888777765 4557899999999999999999999999996
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1e-36 Score=239.41 Aligned_cols=249 Identities=22% Similarity=0.310 Sum_probs=212.2
Q ss_pred hccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcE
Q 012994 54 FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTV 133 (452)
Q Consensus 54 ~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v 133 (452)
..+..++.|.||...|..++.+++| ++.++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|
T Consensus 51 ~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTi 129 (315)
T KOG0279|consen 51 KYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTI 129 (315)
T ss_pred ccCceeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCccee
Confidence 3455688999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEe--cCCeeeeeecCC--CCeEEEeC--CeEEEEeCCCCCcceecccCCCceE
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVW--KNSFWAVDHQWE--GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVI 207 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (452)
++|+.-... ....... ..-|.++.|+|+ ..++++++ +.+++||+++.+....+.+|.+.++
T Consensus 130 klwnt~g~c-------------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 130 KLWNTLGVC-------------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVN 196 (315)
T ss_pred eeeeecccE-------------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEE
Confidence 999985431 1111111 567899999998 67888876 5799999999999999999999999
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM- 286 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~- 286 (452)
.++++|+| .++++|+.||.+.+||++.++.++.+.....+.+++|+|+...+.++ .+..|.+||+...........
T Consensus 197 t~~vSpDG-slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a--t~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 197 TVTVSPDG-SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA--TATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEEECCCC-CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec--cCCceEEEeccchhhhhhcccc
Confidence 99999999 89999999999999999999999999999999999999987654333 334499999987543322211
Q ss_pred --Cc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 287 --GH-----ESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 287 --~~-----~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+. .....+++|++||..|++|..|+.|++|.+.
T Consensus 274 ~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 274 GIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 11 2346778999999999999999999999875
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-36 Score=254.02 Aligned_cols=308 Identities=19% Similarity=0.357 Sum_probs=256.3
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----eEEEee------c----CCCCeeEEEEccCCCeEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYS------G----HQGAVRGLTVSTDGRILV 125 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~------~----h~~~v~~l~~~~~~~~l~ 125 (452)
..+. |..+|.+.+|+|-....+++|+.|-..++|++.... ....++ + .+..|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 999999999999873489999999999999987411 111111 1 235799999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCC
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (452)
+|+.||.+++|+.... .......+.++|.++.|+..|.++++++ +++.+||..++...+.+..|.
T Consensus 252 tG~~~G~~riw~~~G~-------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGN-------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred EeecCcEEEEEecCch-------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc
Confidence 9999999999998643 3334556788999999999999999997 689999999999999999998
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
.+-.++.|..+. -+++++.||.|+++.+....+..++.. ...++.+.|+|.+.. +++++.|+++.+|........
T Consensus 319 ~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L-LaS~SdD~TlkiWs~~~~~~~- 394 (524)
T KOG0273|consen 319 APALDVDWQSND--EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL-LASCSDDGTLKIWSMGQSNSV- 394 (524)
T ss_pred CCccceEEecCc--eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce-EEEecCCCeeEeeecCCCcch-
Confidence 887889998754 589999999999999999998888774 567899999998864 899999999999997764433
Q ss_pred eeeeCcccceEEEEEcCCC---------CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 283 CVHMGHESAVMDIDYSPTG---------REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
..+.+|...|..+.|+|+| ..+++++.|++|++||+..+.++..+.. |..+|.+++|+|+|+|+++|+.|
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k-H~~pVysvafS~~g~ylAsGs~d 473 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK-HQEPVYSVAFSPNGRYLASGSLD 473 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc-CCCceEEEEecCCCcEEEecCCC
Confidence 3445899999999999975 4689999999999999999999988744 45899999999999999999999
Q ss_pred CcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 354 TNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 354 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
|.|++|++++++.+... ...+.|..++|.-.-.
T Consensus 474 g~V~iws~~~~~l~~s~------------------~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 474 GCVHIWSTKTGKLVKSY------------------QGTGGIFELCWNAAGD 506 (524)
T ss_pred CeeEeccccchheeEee------------------cCCCeEEEEEEcCCCC
Confidence 99999999999987665 3345566777765443
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-36 Score=231.42 Aligned_cols=280 Identities=16% Similarity=0.270 Sum_probs=237.7
Q ss_pred hhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccC
Q 012994 43 RALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTD 120 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~ 120 (452)
.-...+++|...++.+.++++...+.|+.+...|++ ..||+++. -.|++||+.++. ++.++.+|...|+++.|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeec
Confidence 345567899999999999999888999999999998 88888874 589999998875 58899999999999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCccee
Q 012994 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS 198 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~ 198 (452)
|++++|||.||+++|||++.. .....+.+..+++++..+|+..-+++++ |.|++||+........
T Consensus 95 grWMyTgseDgt~kIWdlR~~-------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSL-------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred CeEEEecCCCceEEEEeccCc-------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 999999999999999999874 3444556678899999999998888887 6899999998866554
Q ss_pred cc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-------eecccceEEEccCCCceEEeecCCCeE
Q 012994 199 FQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-------MRTKSNSISWNPMEPMNFTAANEDCNC 270 (452)
Q Consensus 199 ~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (452)
+. ....+|.++...|+| .+++.+...|..++|++-.......+. +...+..+.++|++.+ +++++.|..+
T Consensus 162 liPe~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~-lat~ssdktv 239 (311)
T KOG0315|consen 162 LIPEDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY-LATCSSDKTV 239 (311)
T ss_pred cCCCCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE-EEeecCCceE
Confidence 43 345689999999999 788899999999999987654333322 3455678889998876 8899999999
Q ss_pred EEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 271 YSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 271 ~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
++|+....-.......+|..++.+++||.||.||+||+.|+.+++||+..++.+..+..++ ....|++.
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~-K~~vc~~l 308 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH-KAAVCVAL 308 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc-cccEEEEe
Confidence 9999998866667778999999999999999999999999999999999999998887777 55556654
No 25
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.2e-37 Score=234.48 Aligned_cols=277 Identities=22% Similarity=0.319 Sum_probs=232.1
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
-...|.+|.++|.++.|+-+| +|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCC-CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 456788999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+.++ +.++.+.+|.+.|+.+.|+... .
T Consensus 88 V~TG----------------------------------------------------kv~Rr~rgH~aqVNtV~fNees-S 114 (307)
T KOG0316|consen 88 VNTG----------------------------------------------------KVDRRFRGHLAQVNTVRFNEES-S 114 (307)
T ss_pred cccC----------------------------------------------------eeeeecccccceeeEEEecCcc-e
Confidence 8655 5578889999999999999877 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
.+++|+-|..+++||.++........+. ..+.++.. ....+++|+.||+++.||++......-. ...+|++
T Consensus 115 Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~sDy---~g~pit~ 188 (307)
T KOG0316|consen 115 VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSSDY---FGHPITS 188 (307)
T ss_pred EEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe---cccEEEeeccCCcEEEEEeecceeehhh---cCCccee
Confidence 9999999999999999876544333332 23334433 3456999999999999999986544332 2358999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChh
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 373 (452)
++|++||+..+.++.|+++++.|-.+|+.+..+..+.. ..-..++++.....+++|++||.+++||+..+..+..+..
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~- 267 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSV- 267 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeecc-
Confidence 99999999999999999999999999999988866542 3345677888888999999999999999999888766642
Q ss_pred hhhhhHHHHHHHHhhccCccccccccCCCCChhhHHH
Q 012994 374 EQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKA 410 (452)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 410 (452)
.....+..+.+||.++..+...
T Consensus 268 ---------------~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 268 ---------------VSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred ---------------CCceeEEeeecccCccceeEec
Confidence 2234478999999999877543
No 26
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=261.24 Aligned_cols=298 Identities=17% Similarity=0.295 Sum_probs=257.9
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEeCCCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-CTVKLWNVPVAT 142 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~~~~ 142 (452)
.....|+|.+|++.- ++|++|-..|...+|.+....+++.+.-...+|..++|+..|.+||.|+.. |.+-||+..+..
T Consensus 263 ~~~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs 341 (893)
T KOG0291|consen 263 QNSSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES 341 (893)
T ss_pred ccccceeeeeccCCc-eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc
Confidence 334789999999987 999999999999999999999999998777899999999999999998764 899999998763
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEE
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 220 (452)
.......+...+.+++++|||.++++++ |.|+|||..++-++.+|..|...|+.+.|+..+ +.++
T Consensus 342 ------------YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~ll 408 (893)
T KOG0291|consen 342 ------------YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLL 408 (893)
T ss_pred ------------eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEE
Confidence 3444455677889999999999999997 679999999999999999999999999999988 8999
Q ss_pred EEecCCeEEEEEccCCCCceEEEeeccc--ceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 221 TTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
+.+-||+|+.||+......+++..+.+. .+++..|.|..+++.+-+.-.|++|+.++.. ...++.||.++|.+++|+
T Consensus 409 ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 409 SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehhcCCCCcceeeEEc
Confidence 9999999999999999988888876554 6788888888766666666789999999864 445677999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCc-eeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhh
Q 012994 299 PTGREFVTGSYDRTIRIFQYNGGR-SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 377 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 377 (452)
|+|..|++|++|.+|++||+-... ....+... ..++.++|+|||+-|++++.||.|.+||.+.+.++..+.++....
T Consensus 488 ~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~--sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~ 565 (893)
T KOG0291|consen 488 PDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR--SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLS 565 (893)
T ss_pred cccCeEEeccccceEEEEEeeccCceeeeEeec--cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcc
Confidence 999999999999999999986542 33333333 569999999999999999999999999999999998888776544
Q ss_pred h
Q 012994 378 H 378 (452)
Q Consensus 378 ~ 378 (452)
.
T Consensus 566 ~ 566 (893)
T KOG0291|consen 566 G 566 (893)
T ss_pred c
Confidence 4
No 27
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=235.40 Aligned_cols=289 Identities=22% Similarity=0.371 Sum_probs=256.4
Q ss_pred ccccccccEEEEEeCC---CCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 61 ALDGHRDGISCMAKNP---NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~---~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
+-.||+.+|..++|+| +| .+|++++.||.-.+-+-++|.-+.++.+|.+.|++...+.+....++++.|=+.++||
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred EEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4579999999999986 66 8899999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCC-cceecccCCCceEEEEECCC
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQ-PINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~ 214 (452)
.-++ ..+..+.+..-+.+++|+.|...+++++. -++|||++..+ +...+.+|.+.|..+.|...
T Consensus 88 a~tg-------------delhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 88 AVTG-------------DELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred hhhh-------------hhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc
Confidence 9877 44555667788899999999999999984 49999998764 66788999999999999987
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
+ +.++++..|++|++||.+++..++.+....+++++..++++.. ++....+.|.+||...+..+..... ...|.+
T Consensus 155 D-~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~i--lTia~gssV~Fwdaksf~~lKs~k~--P~nV~S 229 (334)
T KOG0278|consen 155 D-KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRI--LTIAYGSSVKFWDAKSFGLLKSYKM--PCNVES 229 (334)
T ss_pred C-ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCE--EEEecCceeEEeccccccceeeccC--cccccc
Confidence 7 6777889999999999999999999999999999999999874 5556677899999998877665432 346889
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
..++|+...+++|+.|+.++.||+.++..+..+..+|.++|.|+.|+|||...++|+.||+|++|.+..++...
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 99999999999999999999999999999988767777999999999999999999999999999998776543
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=246.40 Aligned_cols=289 Identities=19% Similarity=0.260 Sum_probs=236.2
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC---ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 134 (452)
-.+.|..|++.|.-+.|+++| ++||+++.|.+..+|++... +..+++.+|..+|..+.||||.++|++|+.|..+.
T Consensus 216 t~qil~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 346788999999999999999 99999999999999987654 44778899999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc-CCCceEEEEE
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW-GTDTVISVRF 211 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~ 211 (452)
+||+.++......... ....+.+++|.|||..+++|+ +.+..||++... ....++ ....|.+++.
T Consensus 295 lwDv~tgd~~~~y~~~-----------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSG-----------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAI 362 (519)
T ss_pred eccCCcchhhhhcccC-----------cCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEE
Confidence 9999998664443222 246778999999999999998 569999987654 333333 2357999999
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
.++| ..+++.+.|..|++|+..+......+....++++++.+.++.. +++.-.+..+.+||+... .....+.||...
T Consensus 363 t~Dg-k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~-~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 363 TYDG-KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL-ALVNLQDQEIHLWDLEEN-KLVRKYFGHKQG 439 (519)
T ss_pred cCCC-cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE-EEEEcccCeeEEeecchh-hHHHHhhccccc
Confidence 9999 5666777899999999988777777778888999999988776 666778889999999944 333444466543
Q ss_pred --eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeeccc
Q 012994 292 --VMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 292 --v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+..-||-- +..++++|+.|+.|+||+..+++++..+.+ |...|++++|+| +..++|+||+||+|+||....
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG-Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG-HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 33345544 557999999999999999999999988755 458899999999 566899999999999998764
No 29
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9.9e-35 Score=227.35 Aligned_cols=286 Identities=21% Similarity=0.297 Sum_probs=230.1
Q ss_pred ccccccccccccEEEEEeCCC-CcceEEEeeCCCcEEEEeCCCC---ceEEEe-ecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 57 PFIGALDGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANR---RTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~~---~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
-.++.+.||++.|..++|+|- | ..||+|+.|..|++|+...+ .+...+ .+|...|.+++|+|.|++|+++|.|.
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 346788999999999999998 6 79999999999999998753 233333 47999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCC---cceecccCCCce
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQ---PINSFQWGTDTV 206 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~---~~~~~~~~~~~i 206 (452)
++.||.-..+.. .....+..+.+.+.+++|+++|.+|++++. .|-||.+.... ....++.|...|
T Consensus 84 t~~Iw~k~~~ef----------ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 84 TVVIWKKEDGEF----------ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred eEEEeecCCCce----------eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999998765543 233445567889999999999999999984 69999987543 567788999999
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCC---CCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMS---SPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
..+.|+|.. .+|++++.|++|++|+-... .+.+++... ..+-+++|.+.|. .+++++.|+.+.+|-....
T Consensus 154 K~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~~~---- 227 (312)
T KOG0645|consen 154 KHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLYTD---- 227 (312)
T ss_pred cEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeeccC----
Confidence 999999987 79999999999999987632 234444433 3556888999884 4899999999999986521
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------eeeeeccCCcCcEEEEEEcCC-CCEEEEeeCCCc
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR------SREIYHTKRMQRVFCVKFSCD-ASYVISGSDDTN 355 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~ 355 (452)
....|...+..+.|. ...|++++.|+.|++|.-...- .+......|...|++++|.|. ...|++|++||.
T Consensus 228 -~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~ 304 (312)
T KOG0645|consen 228 -LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGI 304 (312)
T ss_pred -cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCce
Confidence 222577889999998 4589999999999999876431 112234556678999999994 678999999999
Q ss_pred EEEeecc
Q 012994 356 LRLWKAK 362 (452)
Q Consensus 356 i~iw~~~ 362 (452)
|++|.+.
T Consensus 305 v~~W~l~ 311 (312)
T KOG0645|consen 305 VNFWELE 311 (312)
T ss_pred EEEEEec
Confidence 9999874
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=256.25 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=233.8
Q ss_pred CchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCC-CC
Q 012994 33 RPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GA 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~ 111 (452)
.|.+..+..........||+-..-.+-..++.|..+|.++.|++++ .++++|+.+|.|++|+.. ...+..+.+|. ..
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpn-mnnVk~~~ahh~ea 182 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPN-MNNVKIIQAHHAEA 182 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccc-hhhhHHhhHhhhhh
Confidence 3333333333444455678776666667789999999999999999 999999999999999975 44455555554 89
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d 189 (452)
|.+++|+|+...+++|+.||+|+|||....+ .......+.-.+.+++|+|...++++++. .|++||
T Consensus 183 IRdlafSpnDskF~t~SdDg~ikiWdf~~~k------------ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------------EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hheeccCCCCceeEEecCCCeEEEEeccCCc------------hhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 9999999998999999999999999997663 23334556678899999999999999985 499999
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCC
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
.+++.++.++..|...|..+.|+|++ ++|++++.|..+++||+++.+.+..+. +...+.++.|+|-...+|.+|+.||
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg 329 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG 329 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC
Confidence 99999999999999999999999999 899999999999999999877777776 6778899999999999999999999
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.+..|......+...+..+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999986677777777999999999999999999999999999999754
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-36 Score=264.25 Aligned_cols=339 Identities=17% Similarity=0.325 Sum_probs=270.6
Q ss_pred hhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCe
Q 012994 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 123 (452)
+...+++|+..+....-+|.||+.+|+++.|+..| ..|++||.|+.|.+||+-...-+..+.+|...|+.+-|..+.++
T Consensus 85 aDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G-~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~ 163 (888)
T KOG0306|consen 85 ADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIG-TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSF 163 (888)
T ss_pred cCceEEeeccCCCceeeeecccccceEEEEEcccC-ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeE
Confidence 45667899988888888999999999999999999 99999999999999999888888899999999999999887889
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCC---------------------------------------------------------
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDS--------------------------------------------------------- 146 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~--------------------------------------------------------- 146 (452)
|++++.|+.|++||+.+..+...
T Consensus 164 lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs 243 (888)
T KOG0306|consen 164 LVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS 243 (888)
T ss_pred EEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeecc
Confidence 99999999999999811111000
Q ss_pred --------------------------------------------------------------------------------
Q 012994 147 -------------------------------------------------------------------------------- 146 (452)
Q Consensus 147 -------------------------------------------------------------------------------- 146 (452)
T Consensus 244 k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~ki 323 (888)
T KOG0306|consen 244 KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKI 323 (888)
T ss_pred CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhe
Confidence
Q ss_pred ---------------------------CCC-CCC-----CCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCC
Q 012994 147 ---------------------------DDS-TDN-----SSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNR 192 (452)
Q Consensus 147 ---------------------------~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~ 192 (452)
... ... ....+....+...+.+++++.+...+++++ +.+.+|+..+
T Consensus 324 ks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t 403 (888)
T KOG0306|consen 324 KSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDT 403 (888)
T ss_pred eEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccC
Confidence 000 000 000122333455678888888888888886 4799999876
Q ss_pred CCcce----------------------------------------ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEE
Q 012994 193 SQPIN----------------------------------------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232 (452)
Q Consensus 193 ~~~~~----------------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d 232 (452)
.++++ .++.|.+.|.+++.+|++ ..+++|+.|.+|++||
T Consensus 404 ~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWd 482 (888)
T KOG0306|consen 404 LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWD 482 (888)
T ss_pred cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEe
Confidence 55433 344678889999999988 6788999999999999
Q ss_pred ccCCC-------------CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC
Q 012994 233 LRMSS-------------PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 299 (452)
Q Consensus 233 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (452)
..-.. ..+.+.....+.++.++|++.+ ++++--|.++.+|-+.+..-.. .+.||.-||.|+.+||
T Consensus 483 f~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~-LaVsLLdnTVkVyflDtlKFfl-sLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 483 FKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL-LAVSLLDNTVKVYFLDTLKFFL-SLYGHKLPVLSMDISP 560 (888)
T ss_pred EEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE-EEEEeccCeEEEEEecceeeee-eecccccceeEEeccC
Confidence 64211 1244556778899999999986 7888889999999888765444 4459999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhH
Q 012994 300 TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHA 379 (452)
Q Consensus 300 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 379 (452)
|+++++|||.|..|++|-++-|.+...+..+. ..|.++.|-|...+++++|.||.|+-||-...+.++.+.
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHd-DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------- 631 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHD-DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------- 631 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhccc-CceeEEEEcccceeEEEecCcceEEeechhhhhhheeec--------
Confidence 99999999999999999999999988876554 889999999999999999999999999999988887775
Q ss_pred HHHHHHHhhccCccccccccCCCCC
Q 012994 380 YHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
+|..++.+++..|+-.
T Consensus 632 ---------~H~~ev~cLav~~~G~ 647 (888)
T KOG0306|consen 632 ---------GHHSEVWCLAVSPNGS 647 (888)
T ss_pred ---------cchheeeeeEEcCCCC
Confidence 5666666666666643
No 32
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=230.40 Aligned_cols=245 Identities=23% Similarity=0.363 Sum_probs=215.5
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-CceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
-.+.+..++|++...+.+++++.||++++||+.. ..++..++.|..+|.++.|++ ++..++++|.||+|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 4678999999999878999999999999999643 357888999999999999998 6667888899999999998533
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
+.+.++.+|...|....|+|..+++++++
T Consensus 138 ---------------------------------------------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 138 ---------------------------------------------------NSVQTFNGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred ---------------------------------------------------cceEeecCCccEEEEEecCCCCCCeEEEc
Confidence 34677888999999999999999999999
Q ss_pred ecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC-
Q 012994 223 ASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT- 300 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~- 300 (452)
+.||++++||++.......+..+ ..+.++.|+.....++++|+.|+.|+.||+++...+...+.+|.-.|..+.|||.
T Consensus 167 Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence 99999999999987665555544 4788999999999999999999999999999999999999999999999999994
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeec
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~ 361 (452)
...||+++.|-+++|||...+........+|..-+..+.||+ ++.++++.+.|+.++||+.
T Consensus 247 ~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 568999999999999999876655555566778899999998 6779999999999999984
No 33
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-34 Score=244.16 Aligned_cols=326 Identities=19% Similarity=0.302 Sum_probs=244.0
Q ss_pred CCCCchhhhhhhHhhhhHHHhhhhhccccccccc---cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE---
Q 012994 30 PNLRPQEKAVEYVRALTAAKLEKIFARPFIGALD---GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC--- 103 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--- 103 (452)
-.+.|.+...+.......+-+++=.++..+..|. +|++.|++++|+||+ ..++|++.|.+++|||+.+.+++.
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEee
Confidence 4467777777777777777777778888888887 999999999999998 999999999999999987644332
Q ss_pred ----------------------------------------EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 104 ----------------------------------------QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 104 ----------------------------------------~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
.+.+|...|+++..+|++++|++|+.||.|.-|+..++..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 2348999999999999999999999999999999988754
Q ss_pred CCCCCC-CCC--------CCCCeeEEEecCCe----------------------eeeeecCCCC-eEEEeCCeEEEEeCC
Q 012994 144 TDSDDS-TDN--------SSEPLAVYVWKNSF----------------------WAVDHQWEGD-LFATAGAQVDIWNHN 191 (452)
Q Consensus 144 ~~~~~~-~~~--------~~~~~~~~~~~~~~----------------------~~~~~~~~~~-~~~~~~~~i~i~d~~ 191 (452)
-..... +.. ....+....+...+ .+++..+++. .+++..+.|.++.-.
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 322111 100 00111111111111 1222233322 222222334333321
Q ss_pred CCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc---eEEEeecccceEEEccCCCceEEeecCCC
Q 012994 192 RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA---RKVIMRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
+. +..+. -.-...+++++|++ ..+++|+.||.|++|.+...... ..+.+...++.++++|++.+ ++++...+
T Consensus 435 ~~--~~~~~-~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~y-la~~Da~r 509 (603)
T KOG0318|consen 435 TK--VSSIP-IGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAY-LAAGDASR 509 (603)
T ss_pred Cc--ceeec-cccccceEEEcCCC-CEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcE-EEEeccCC
Confidence 11 11111 12346789999988 79999999999999999875533 44557788999999999876 88899999
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.+.+||..+.........-|...|.+++|+|+..++|||+.|-.|.||++............|...|+.+.|- |...|+
T Consensus 510 kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvv 588 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVV 588 (603)
T ss_pred cEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEE
Confidence 9999999988776666667999999999999999999999999999999998766666677777789999997 556799
Q ss_pred EeeCCCcEEEeecc
Q 012994 349 SGSDDTNLRLWKAK 362 (452)
Q Consensus 349 s~~~dg~i~iw~~~ 362 (452)
+.+.|..|++|++.
T Consensus 589 SsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 589 SSGQDANIKVWNVT 602 (603)
T ss_pred eccCcceeEEeccc
Confidence 99999999999874
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-34 Score=264.34 Aligned_cols=289 Identities=21% Similarity=0.358 Sum_probs=244.5
Q ss_pred ccccccc-cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 59 IGALDGH-RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 59 ~~~l~~h-~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
...+.+| ...|.|+.|+++| +++++++.|+.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 4455554 8899999999999 889999999999999997777 77778899999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
||+.... ........+...+++++|+++++++++++ +.|++||+.+++++..+.+|.+.|++++|++
T Consensus 230 wd~~~~~-----------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 230 WDLKDDG-----------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred eeccCCC-----------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC
Confidence 9994331 23344457788899999999999999987 5799999999999999999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCC--CceEEEeec---ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 214 AEPNVLATTASDRSITLYDLRMSS--PARKVIMRT---KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
++ ++|++++.||.|++||+.++. +...+.... ....+.|+|++.+ ++++..|+.+.+||++......... +|
T Consensus 299 d~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~~~~-~~ 375 (456)
T KOG0266|consen 299 DG-NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVGTYT-GH 375 (456)
T ss_pred CC-CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcceeeec-cc
Confidence 98 789999999999999999988 334443322 4588999998876 8888999999999999876555444 44
Q ss_pred cc---ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEee--CCCcEEEeecc
Q 012994 289 ES---AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDTNLRLWKAK 362 (452)
Q Consensus 289 ~~---~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 362 (452)
.. .+.+...++.|.++++|+.|+.|++||+.++..+..+..+....+..+.++|..+++++++ .|+.+++|...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 376 SNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 44 4555566889999999999999999999998777776555258899999999999999988 78999999764
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-33 Score=277.73 Aligned_cols=284 Identities=15% Similarity=0.257 Sum_probs=226.4
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----c----eEEEeecCCCCeeEEEEcc-CCCeEEEEeCCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----R----TVCQYSGHQGAVRGLTVST-DGRILVSCGTDC 131 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~----~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg 131 (452)
.+.+|.+.|.+++|+|++ .+||+|+.|+.|+|||+... . ....+. +...|.+++|++ ++.+|++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 356699999999999998 99999999999999997532 1 222333 456899999987 578999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
+|++||+.++.. ......+...+++++|++ ++.++++++ +.|++||+.++..+..+..+ ..+.+
T Consensus 556 ~v~lWd~~~~~~------------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 556 VVQVWDVARSQL------------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred eEEEEECCCCeE------------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999976632 222334567899999996 788888886 67999999999888887754 67899
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCCC-CceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCc-----ccc
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL-----DEA 281 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~ 281 (452)
+.|++.++.++++|+.||.|++||++... ....+. +...+..+.|. + ...+++++.|+.+.+||++.. ...
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~-~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-D-SSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-C-CCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 99976655899999999999999998765 333333 34566788886 3 346889999999999999753 234
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee------------ccCCcCcEEEEEEcCCCCEEEE
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY------------HTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~s 349 (452)
...+.+|...+..++|+|++.+|++|+.||.|++|+.........+ ...+...|.+++|+|++.+|++
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva 780 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA 780 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE
Confidence 4566789999999999999999999999999999998765433221 1223356999999999999999
Q ss_pred eeCCCcEEEeec
Q 012994 350 GSDDTNLRLWKA 361 (452)
Q Consensus 350 ~~~dg~i~iw~~ 361 (452)
|+.||.|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 999999999986
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-35 Score=261.30 Aligned_cols=215 Identities=20% Similarity=0.353 Sum_probs=191.4
Q ss_pred HhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe
Q 012994 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 128 (452)
.+.+........++.||+++|..+.|+|+. ++|+++|.|++|++|.+.+...+..++||..+|+++.|+|.|-|+||+|
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred hhccccCCceeEEeecCCCceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 333444555667799999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCce
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTV 206 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i 206 (452)
.|++.++|........+ ....+.+.+.|+.|+|+..++++++. ++++||+.+|..++.|.+|.++|
T Consensus 513 ~D~tArLWs~d~~~PlR------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 513 HDQTARLWSTDHNKPLR------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred CCceeeeeecccCCchh------------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 99999999987653222 23345678889999999999999974 69999999999999999999999
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
.+++|+|.| .+|++|+.||.|.+||+.++..+..+ .
T Consensus 581 ~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~~v~~l-------------------------------------------~ 616 (707)
T KOG0263|consen 581 TALAFSPCG-RYLASGDEDGLIKIWDLANGSLVKQL-------------------------------------------K 616 (707)
T ss_pred EEEEEcCCC-ceEeecccCCcEEEEEcCCCcchhhh-------------------------------------------h
Confidence 999999988 89999999999999999887765543 2
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+|.+.|.++.||.+|..||+|+.|.+|++||+..
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 7899999999999999999999999999999864
No 37
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.3e-34 Score=233.04 Aligned_cols=281 Identities=24% Similarity=0.419 Sum_probs=237.3
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC---CeEEEEeCCCcEEEEeCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG---RILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~ 141 (452)
|.+.|.++...+ ..+++|++||.+++||. .|+....+.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~~---~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGAS---KWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhcccC---ceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 889999998883 78999999999999996 688899999999999999986433 35999999999999999877
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCC-------------------------CC
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR-------------------------SQ 194 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~-------------------------~~ 194 (452)
..... .......+...|.++...++|..+++++ ..+.+|+..+ +.
T Consensus 180 ~~~~~--------~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 180 ENKVK--------ALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred hhhhh--------HHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 54322 1122237788999999999999999997 5699999321 34
Q ss_pred cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
++..+.+|..+|.++.|++. ..+++++.|.+|+.||+.++.....+.......++.++| ...++++|+.|..+++||
T Consensus 252 P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWD 328 (423)
T ss_pred ceEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecC
Confidence 56778899999999999983 578999999999999999999999999999999999999 556699999999999999
Q ss_pred CCCcc--ccceeeeCcccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc-eeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 275 SRKLD--EAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGR-SREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 275 ~~~~~--~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.++.. .....+.+|.+.|.++.|+|. ...|++|+.|+++++||+++.+ ++..+. .|...|.++.|. ++.+|++|
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~-~~~~IvSG 406 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWN-EGGLIVSG 406 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEecc-CCceEEec
Confidence 98764 445667799999999999995 4568999999999999999877 555554 445889999998 56789999
Q ss_pred eCCCcEEEeecc
Q 012994 351 SDDTNLRLWKAK 362 (452)
Q Consensus 351 ~~dg~i~iw~~~ 362 (452)
|.|.+|+|+...
T Consensus 407 GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 407 GADNKLRIFKGS 418 (423)
T ss_pred cCcceEEEeccc
Confidence 999999998653
No 38
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3e-33 Score=218.66 Aligned_cols=285 Identities=21% Similarity=0.318 Sum_probs=237.4
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
.|+||..+++.+.|+.+| .+|++++.|.++.||-..+|+.+.++.+|.+.|+|+....+.++|+||+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 478999999999999999 9999999999999999889999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-------CeEEEEeCC-------CCCcceecccCCCce
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHN-------RSQPINSFQWGTDTV 206 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~-------~~~~~~~~~~~~~~i 206 (452)
| +.+.....+.++..+.|+.+|++++... +.|.++|++ ..+++..+..+...+
T Consensus 84 G-------------k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 84 G-------------KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred C-------------cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 8 5566777788999999999999887764 248999988 456788888888999
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE--EeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV--IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 284 (452)
+.+.|.|-+ ..|++|..||.|.+||++++...... .+...++.+.++++..+ +++++.|.+-.+||..++......
T Consensus 151 t~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~-FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 151 TSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY-FITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce-EEecccCccceeeeccceeeEEEe
Confidence 999999988 78999999999999999997654433 34567889999998765 899999999999999998776655
Q ss_pred eeCcccceEEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeeee-----------ccCCcCcEEEEEEcCCCCEEEEee
Q 012994 285 HMGHESAVMDIDYSPTGREFVTGSYDRT--IRIFQYNGGRSREIY-----------HTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g~~l~s~~~dg~--i~iwd~~~~~~~~~~-----------~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
. ...+|++.+++|.-..++.|+.-.. |.-=+.+.|+....+ ..+|-++|++++|+|+|+..++|+
T Consensus 229 ~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 229 T--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred e--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 4 4578999999997777777654322 222222233221111 245669999999999999999999
Q ss_pred CCCcEEEeeccc
Q 012994 352 DDTNLRLWKAKA 363 (452)
Q Consensus 352 ~dg~i~iw~~~~ 363 (452)
.||.|++..+..
T Consensus 307 EDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 307 EDGYVRLHHFDS 318 (327)
T ss_pred CCceEEEEEecc
Confidence 999999987654
No 39
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-35 Score=240.30 Aligned_cols=256 Identities=20% Similarity=0.392 Sum_probs=208.7
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
.+.+++|+..+..+++.|.||++.|.|+.|.. +.+++|+.|.+|++||+++++++.++-+|...|..+.|+. .++
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~m 290 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYM 290 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEE
Confidence 45678999999999999999999999999975 6899999999999999999999999999999999999974 499
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccC
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~ 202 (452)
+|++.|.++.+||+....-+. -......+...+..+.|+.. ++++++| ++++|++.+++.+..+.+|
T Consensus 291 vtcSkDrsiaVWdm~sps~it---------~rrVLvGHrAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl~gH 359 (499)
T KOG0281|consen 291 VTCSKDRSIAVWDMASPTDIT---------LRRVLVGHRAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTLNGH 359 (499)
T ss_pred EEecCCceeEEEeccCchHHH---------HHHHHhhhhhheeeeccccc--eEEEecCCceEEEEeccceeeehhhhcc
Confidence 999999999999997653110 01112234456666666544 6666654 6999999999999999999
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
...|.|+.+. + .++++|+.|.+|++||+..+.+++.
T Consensus 360 kRGIAClQYr--~-rlvVSGSSDntIRlwdi~~G~cLRv----------------------------------------- 395 (499)
T KOG0281|consen 360 KRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRV----------------------------------------- 395 (499)
T ss_pred cccceehhcc--C-eEEEecCCCceEEEEeccccHHHHH-----------------------------------------
Confidence 8888888775 3 7889999999999999887776653
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--------eccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI--------YHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
+.||..-|.++.| |.+.+++|+.||+|++||+..+..... ....|.+.|..+.| |...+++++.|.
T Consensus 396 --LeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 396 --LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred --HhchHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 3489999999999 557899999999999999987643311 12345578999999 567899999999
Q ss_pred cEEEeecccccc
Q 012994 355 NLRLWKAKASEQ 366 (452)
Q Consensus 355 ~i~iw~~~~~~~ 366 (452)
+|.|||+.++-.
T Consensus 470 tILiWdFl~~~~ 481 (499)
T KOG0281|consen 470 TILIWDFLNGPP 481 (499)
T ss_pred eEEEEEcCCCCc
Confidence 999999987654
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-33 Score=242.48 Aligned_cols=297 Identities=16% Similarity=0.274 Sum_probs=256.4
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
+.+++..|++.|.|+.|+|.. ..++++-.+|.|.|||.++...+..+.-..-+|.+..|-+..+++++|+.|..|+||+
T Consensus 5 ~krk~~~rSdRVKsVd~HPte-Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTE-PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN 83 (794)
T ss_pred hhhHhhccCCceeeeecCCCC-ceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe
Confidence 345666799999999999998 8999999999999999999999999998889999999999889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCC-CcceecccCCCceEEEEECCC
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRS-QPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~ 214 (452)
.+++. .......+..-+.+++.+|...++++++. .|++||.+.. .+.+.+.+|...|.+++|+|.
T Consensus 84 ynt~e------------kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 84 YNTGE------------KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred cccce------------eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC
Confidence 99883 45555667788999999999999999985 5999999865 577899999999999999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCC-ceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEP-MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
+++.+++++-|++|++|.+.+..+..++.. ...++++.+-+.+. -.+++|+.|..+.+||.++.. ..+.+.||...|
T Consensus 152 D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~-CV~TLeGHt~Nv 230 (794)
T KOG0276|consen 152 DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS-CVQTLEGHTNNV 230 (794)
T ss_pred CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHH-HHHHhhcccccc
Confidence 999999999999999999999988888874 45678999988664 468899999999999998754 445677999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
..++|+|.-.++++|+.||+++||+..+-+....+.-+. +.++|++-.+.++.++.|.+.|.|.+ .+...++...+
T Consensus 231 s~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl-eRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsM 306 (794)
T KOG0276|consen 231 SFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL-ERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSM 306 (794)
T ss_pred eEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC-ceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceee
Confidence 999999999999999999999999999877766665544 78999999998888888888777644 55444444433
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.3e-34 Score=222.08 Aligned_cols=277 Identities=20% Similarity=0.301 Sum_probs=233.0
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE--eecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSGHQGAVRGLTVST-DGRILVSCGTDCTVKLW 136 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iw 136 (452)
+.+++|...|.+++|+.+| ..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+| ....|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 6678999999999999999 9999999999999999987755443 468999999999998 66789999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
|+..+++ +..+.. ...-.-+.|+|+|
T Consensus 93 d~r~~k~----------------------------------------------------~~~i~~-~~eni~i~wsp~g- 118 (313)
T KOG1407|consen 93 DIRSGKC----------------------------------------------------TARIET-KGENINITWSPDG- 118 (313)
T ss_pred EeccCcE----------------------------------------------------EEEeec-cCcceEEEEcCCC-
Confidence 9976643 222222 2223457899998
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
.++++++.|..|.+.|.++.+...........+.++|+ ..+.+|+..+..|.+.+.....+++.. ....|.....|+.
T Consensus 119 ~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~-si~AH~snCicI~ 196 (313)
T KOG1407|consen 119 EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQ-SIKAHPSNCICIE 196 (313)
T ss_pred CEEEEecCcccEEEEEecccceeehhcccceeeeeeec-CCCCEEEEecCCceEEEEecccccccc-ccccCCcceEEEE
Confidence 78899999999999999999999988888899999999 555566667777888888877655443 4558999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhh
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 376 (452)
|+|+|++||+|+.|-.+.+||++..-+...+.... -+|..+.||.||++|++|++|..|-|=++++|..+..+
T Consensus 197 f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld-wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI------ 269 (313)
T KOG1407|consen 197 FDPDGRYFATGSADALVSLWDVDELICERCISRLD-WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI------ 269 (313)
T ss_pred ECCCCceEeeccccceeeccChhHhhhheeecccc-CceEEEEeccCcceeeccCccceEEeEecccCCeEEEe------
Confidence 99999999999999999999999887777775544 78999999999999999999999999999999988776
Q ss_pred hhHHHHHHHHhhccCccccccccCCCCChhhHHHHH
Q 012994 377 KHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAAS 412 (452)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 412 (452)
.+...-..++|||..|.+.+.+.+
T Consensus 270 ------------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 270 ------------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ------------eccCCceeEEecCCCceeeEEecC
Confidence 456677899999999987766543
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=231.80 Aligned_cols=291 Identities=17% Similarity=0.254 Sum_probs=246.3
Q ss_pred hcccccccc-ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe--------ecCCCCeeEEEEccCCCeE
Q 012994 54 FARPFIGAL-DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY--------SGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 54 ~~~~~~~~l-~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~l 124 (452)
++..+.+++ -|...-+.|..|+||| ++|++|+.||-|.+||..+|+....+ .-+..+|.|+.|+.|...|
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred chHHhhhheecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 333344444 3566789999999999 99999999999999999998765433 3477899999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (452)
|+|+.||.|++|.+.+|.++..+.. .+...++++.|+.|+..+.+++ ..+++..+.+|+.+..+++|
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdr-----------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDR-----------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhh-----------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc
Confidence 9999999999999999987665543 2356789999999999988887 46999999999999999999
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCcc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD 279 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 279 (452)
...|+...|.++| +.+++++.||+|++|+..+..+..++... ..++++...|.++..++++...+++++.++...
T Consensus 348 sSyvn~a~ft~dG-~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ- 425 (508)
T KOG0275|consen 348 SSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ- 425 (508)
T ss_pred cccccceEEcCCC-CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-
Confidence 9999999999998 78999999999999999999988887653 456788889999999999999999999998752
Q ss_pred ccceeee---CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 280 EAKCVHM---GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 280 ~~~~~~~---~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
....+. ...+...+.++||.|.++.+.+.|+.++.|.+.+|+....+..+. ..+..++-+|..+.|++-+.||.+
T Consensus 426 -vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE-kdvIGl~HHPHqNllAsYsEDgll 503 (508)
T KOG0275|consen 426 -VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE-KDVIGLTHHPHQNLLASYSEDGLL 503 (508)
T ss_pred -EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc-ccccccccCcccchhhhhcccchh
Confidence 222221 223456778899999999999999999999999999887775544 678899999999999999999999
Q ss_pred EEee
Q 012994 357 RLWK 360 (452)
Q Consensus 357 ~iw~ 360 (452)
++|.
T Consensus 504 KLWk 507 (508)
T KOG0275|consen 504 KLWK 507 (508)
T ss_pred hhcC
Confidence 9995
No 43
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=9.5e-33 Score=255.28 Aligned_cols=309 Identities=18% Similarity=0.252 Sum_probs=247.8
Q ss_pred ccccEEEEEeCCCCcceEEEee--CCCcEEEEeCCC------------CceEEEeecCCCCeeEEEEccCCCeEEEEeCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGS--MDGDIRLWDIAN------------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~--~dg~i~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 130 (452)
+...|.+++.+|++ ..++||+ .||.++||+.+. .+.++....|.+.|+|+.|+|||++||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 35579999999999 9999999 899999998652 23456677899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCC------CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC
Q 012994 131 CTVKLWNVPVATLTDSDDS------TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (452)
+.|.||..........+.. ...-........+.+.|..++|+|++.++++++ +.|.+||..+.+.+..+.+|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999999875211111111 111112234456788999999999999999998 67999999999999999999
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------ecccceEEEccCCCceEEeecCC---CeEEE
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------RTKSNSISWNPMEPMNFTAANED---CNCYS 272 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~i~~ 272 (452)
.+.|..+.|.|-| ++|++-+.|++|++|++.+......+.. ......+.|+|+|.++....+.+ ..+.+
T Consensus 171 ~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 9999999999999 7999999999999999777655555443 23356889999999877665443 35666
Q ss_pred EeCCCccccceeeeCcccceEEEEEcCC-----CC------------EEEEEeCCCeEEEEECCCCceeeeeccCCcCcE
Q 012994 273 YDSRKLDEAKCVHMGHESAVMDIDYSPT-----GR------------EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 335 (452)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 335 (452)
.+..+. .....+.||..++.++.|+|. .+ .+|+|+.|++|.||.....+++...+.-....|
T Consensus 250 ieR~tW-k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI 328 (942)
T KOG0973|consen 250 IERGTW-KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSI 328 (942)
T ss_pred EecCCc-eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCce
Confidence 666443 334456699999999999982 11 688999999999999988888777766666889
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhh
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 376 (452)
.+++|+|||..|+.++.||+|.+..++..+.-..+...+..
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~ 369 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEIS 369 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhc
Confidence 99999999999999999999999999988776666655544
No 44
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-33 Score=253.45 Aligned_cols=251 Identities=22% Similarity=0.375 Sum_probs=204.7
Q ss_pred cccccc-cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC--------------------------------------
Q 012994 58 FIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-------------------------------------- 98 (452)
Q Consensus 58 ~~~~l~-~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-------------------------------------- 98 (452)
..+.+. +|.++|.++.|++|| +|||+||.||.|+||.+..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 345566 899999999999999 9999999999999997653
Q ss_pred ----------------------CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 012994 99 ----------------------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (452)
Q Consensus 99 ----------------------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (452)
.++++.+.||.+.|.+|.|+.+ ++|++++.|.+|+||++....
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-------------- 401 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-------------- 401 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc--------------
Confidence 0123345689999999999976 588899999999999986442
Q ss_pred eeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 157 LAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
++..|. |.+.|+|++|+|.+.++|++|+-||.|+||++...
T Consensus 402 --------------------------------------CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 402 --------------------------------------CLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred --------------------------------------eeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 333443 78999999999999999999999999999999999
Q ss_pred CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--------CcccceEEEEEcCCC-CEEEEE
Q 012994 237 SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--------GHESAVMDIDYSPTG-REFVTG 307 (452)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------~~~~~v~~~~~s~~g-~~l~s~ 307 (452)
+...-.....-+++++|.|+|.. +++|+-+|.+++|+............ .|. .|+++.|.|.. ..+++.
T Consensus 443 ~Vv~W~Dl~~lITAvcy~PdGk~-avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 443 KVVDWNDLRDLITAVCYSPDGKG-AVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred eeEeehhhhhhheeEEeccCCce-EEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEe
Confidence 88888888899999999999654 88999999999999987653332221 233 79999999843 357777
Q ss_pred eCCCeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 308 SYDRTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 308 ~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
+.|..|+|||.++...+..+.+.+. ..-....|+.||++|+++++|..|+||++....
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 7899999999988888877765543 334677899999999999999999999985543
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-33 Score=221.64 Aligned_cols=281 Identities=19% Similarity=0.329 Sum_probs=228.9
Q ss_pred CCCCCCchhhhhhhHhhhhHHHhhhhhcc-ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee
Q 012994 28 YDPNLRPQEKAVEYVRALTAAKLEKIFAR-PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS 106 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~ 106 (452)
|...|+|.....+.......+-+|+++.- +=...++||+++|..+.|.+++ +.+++++.|.+|+.||.++|+.++.++
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEEEEecccceeeehhc
Confidence 34557887777777777888899997643 3345778999999999999999 999999999999999999999999999
Q ss_pred cCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C
Q 012994 107 GHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
+|...|+.+.-+.-| .++.+++.||++++||++... .+..+.....++++.|..++..+.+++ +
T Consensus 130 ~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-------------~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 130 GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-------------AIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cccceeeecCccccCCeEEEecCCCceEEEEeecccc-------------hhhccccceeEEEEEecccccceeeccccC
Confidence 999999999855433 467788999999999998763 333444456778899999999888887 7
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (452)
.|++||++.+.....+.+|.++|+.+..++.+ .++.+-+.|.++++||++-..+.+...
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v-------------------- 255 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCV-------------------- 255 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCC-CccccccccceEEEEEecccCCCCceE--------------------
Confidence 89999999999999999999999999999998 788899999999999997554332210
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
.++.-.. .........++|+|+++.+.+|+.|..+++||......+..+ .+|.+.|.++.|+|.
T Consensus 256 -------~if~g~~--------hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl-pGh~gsvn~~~Fhp~ 319 (338)
T KOG0265|consen 256 -------KIFQGHI--------HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL-PGHYGSVNEVDFHPT 319 (338)
T ss_pred -------EEeecch--------hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc-CCcceeEEEeeecCC
Confidence 0000000 011223456899999999999999999999999887766655 455689999999999
Q ss_pred CCEEEEeeCCCcEEEe
Q 012994 344 ASYVISGSDDTNLRLW 359 (452)
Q Consensus 344 ~~~l~s~~~dg~i~iw 359 (452)
..+|.+++.|.+|++=
T Consensus 320 e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 320 EPIILSCSSDKTIYLG 335 (338)
T ss_pred CcEEEEeccCceeEee
Confidence 9999999999999863
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-34 Score=230.80 Aligned_cols=272 Identities=19% Similarity=0.299 Sum_probs=236.5
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-CceEEEeecCCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTVCQYSGHQG 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~~~~~~h~~ 110 (452)
+||.............++.|+..++.+...|+||++.|..++|+..| .++++++.|-.+.+||..+ .+++..+.+|..
T Consensus 116 ~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h 194 (406)
T KOG0295|consen 116 FHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH 194 (406)
T ss_pred eccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHHHHHhcCccc
Confidence 45555555555456677899999999999999999999999999999 9999999999999999987 567788889999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIW 188 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~ 188 (452)
.|.+++|-|.|.++++++.|.+|+.|++.++-++..+.. +..-+..+..+.||.++++++. .+++|
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~------------h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG------------HSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccceeEEeccC------------chHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 999999999999999999999999999999855444333 3446778899999999999985 59999
Q ss_pred eCCCCCcceecccCCCceEEEEECCC--------------CCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEE
Q 012994 189 NHNRSQPINSFQWGTDTVISVRFNPA--------------EPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISW 253 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~ 253 (452)
-..++++...++.|..+|.+++|.|. +..++.+++.|++|++||+.++.++.++.. ..-+..++|
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af 342 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAF 342 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEE
Confidence 99999999999999999999999872 235899999999999999999999988874 456789999
Q ss_pred ccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 254 NPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
+|.|.+ ++++.+|+++++||+++....... ..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 343 ~p~Gky-i~ScaDDktlrvwdl~~~~cmk~~-~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 343 SPGGKY-ILSCADDKTLRVWDLKNLQCMKTL-EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCeE-EEEEecCCcEEEEEeccceeeecc-CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 998876 788899999999999987665544 489999999999999999999999999999964
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.2e-32 Score=223.93 Aligned_cols=279 Identities=19% Similarity=0.278 Sum_probs=230.8
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA 181 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (452)
.+.+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.++++. .....+...+..+++++-..++.++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk------------ltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK------------LTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE------------EeecchhheeeeeeecccCceEEEe
Confidence 3456799999999999999999999999999999999998543 3334456678889999999999888
Q ss_pred C--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCC
Q 012994 182 G--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEP 258 (452)
Q Consensus 182 ~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 258 (452)
+ +.|++||+..++.++.+.+|-..|.|++.+|.. +.|++|+.|.++++||+++...+..+. +...+..+.+.|.++
T Consensus 212 gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred cCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence 7 579999999999999999999999999999988 799999999999999999999998887 556778888888777
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
. +++++.|++|++||++...... ....|...|.+++.+|....+|+++.|. |+-|++..|..+..+ .+|..-|+++
T Consensus 291 q-vit~S~D~tvrlWDl~agkt~~-tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nl-sgh~~iintl 366 (460)
T KOG0285|consen 291 Q-VITGSHDSTVRLWDLRAGKTMI-TLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNL-SGHNAIINTL 366 (460)
T ss_pred c-eEEecCCceEEEeeeccCceeE-eeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhcc-ccccceeeee
Confidence 6 8899999999999999876554 4558999999999999999999999886 999999999888774 4555889999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
+...|+ ++++|+++|.+.+||.++|-..+.++...++-. ......|..-+|...--.+|
T Consensus 367 ~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS---------l~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 367 SVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS---------LESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred eeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc---------cccccceeEEeecccCceEE
Confidence 998776 788899999999999999877665533221110 12233455566666655555
No 48
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-31 Score=263.48 Aligned_cols=309 Identities=14% Similarity=0.238 Sum_probs=237.0
Q ss_pred CCcEEEEeCCCCceEEE-----eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe
Q 012994 88 DGDIRLWDIANRRTVCQ-----YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW 162 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (452)
+|.+++|+..+...... +..|.+.|.+++|+|++++||+|+.|+.|+|||+........ ....+......
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----DIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----ccccceEEecc
Confidence 67788999876655433 345899999999999999999999999999999864211000 00112223334
Q ss_pred cCCeeeeeecCC-CCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc
Q 012994 163 KNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (452)
Q Consensus 163 ~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (452)
...+.+++|++. +.++++++ +.|++||+.+++.+..+..|.+.|.+++|+|.++.+|++|+.||.|++||++++...
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence 567788888764 67777775 689999999999999999999999999999865589999999999999999998888
Q ss_pred eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 240 RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
..+.....+.++.|.+.....+++|+.|+.|++||++..........+|...|.++.|. ++.+|++++.|+.|++||+.
T Consensus 612 ~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 612 GTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred EEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 77776667788899887778899999999999999987665556667999999999997 77899999999999999997
Q ss_pred CC------ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCcc
Q 012994 320 GG------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPE 393 (452)
Q Consensus 320 ~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
.+ ..+..+ .+|...+.+++|+|++.+|++|+.||.|++|+......+..+......... ......+...
T Consensus 691 ~~~~~~~~~~l~~~-~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~ 765 (793)
T PLN00181 691 MSISGINETPLHSF-MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS----GLEVDDASQF 765 (793)
T ss_pred CCccccCCcceEEE-cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc----ccccCCCCcE
Confidence 53 333344 345578999999999999999999999999998766544322110000000 0001234567
Q ss_pred ccccccCCCCChhh
Q 012994 394 IKRIVRHRHLPKPI 407 (452)
Q Consensus 394 ~~~~~~~~~~p~~~ 407 (452)
|..++|+|....++
T Consensus 766 V~~v~ws~~~~~lv 779 (793)
T PLN00181 766 ISSVCWRGQSSTLV 779 (793)
T ss_pred EEEEEEcCCCCeEE
Confidence 89999998776544
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=227.51 Aligned_cols=269 Identities=20% Similarity=0.394 Sum_probs=208.0
Q ss_pred CCCCCCchhhhhhhHhhhhHH-Hhhhhhcccccccccc---ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE
Q 012994 28 YDPNLRPQEKAVEYVRALTAA-KLEKIFARPFIGALDG---HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC 103 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~---h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~ 103 (452)
++|+..|........+....+ .-|+. ...++..+.. ...+|+|+.+.. ..+++|..|++|+|||..+..+..
T Consensus 156 ~~~n~f~~~l~pki~~di~~idsNWr~-Gr~~~~rinc~Se~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~ 231 (499)
T KOG0281|consen 156 FPPNSFYRLLYPKIIQDIETIESNWRC-GRHLLQRINCRSENSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLK 231 (499)
T ss_pred cCCCcchhhhhHHHHHHHhhhhcchhc-cceeeeeecCCcccCCceEEEEecc---hhhhcccccCceEEeccccHHHHH
Confidence 455555544444333332222 12221 2334444432 467899999976 459999999999999999999999
Q ss_pred EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (452)
.+.||++.|.|+.|. .+.|++|+.|.+|++||+++++++..+ +.+...+..+.|+. .++++++
T Consensus 232 ~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tl------------ihHceaVLhlrf~n--g~mvtcSk 295 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTL------------IHHCEAVLHLRFSN--GYMVTCSK 295 (499)
T ss_pred hhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHH------------hhhcceeEEEEEeC--CEEEEecC
Confidence 999999999999995 569999999999999999999654432 33344555555543 3555555
Q ss_pred -CeEEEEeCCCCCc---ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCC
Q 012994 183 -AQVDIWNHNRSQP---INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEP 258 (452)
Q Consensus 183 -~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
..+.+||+..... ...+.+|...|+.+.|+. .++++++.|.+|++|++.+...++.+
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl---------------- 356 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTL---------------- 356 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEeccceeeehhh----------------
Confidence 5799999988753 356778999999999975 68999999999999999888766544
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
.+|...|-|+.+ .|+++++|+.|.+|++||+..|.++..+.++ ..-|.++
T Consensus 357 ---------------------------~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGH-EeLvRci 406 (499)
T KOG0281|consen 357 ---------------------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCI 406 (499)
T ss_pred ---------------------------hcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhch-HHhhhhe
Confidence 388888988877 6899999999999999999999999887554 4789999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
.| |.+.+++|+.||.|+|||+.++..-
T Consensus 407 RF--d~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 407 RF--DNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred ee--cCceeeeccccceEEEEecccccCC
Confidence 99 5678999999999999999887653
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-32 Score=239.48 Aligned_cols=289 Identities=18% Similarity=0.304 Sum_probs=244.6
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
-..+++|+..+.++++++. .+-+.|..|.|.+ +++++|...|.+.+||+.+...+.++++|.+.|++++.+||+..+
T Consensus 393 ~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTIT--CGYILASKFVPGD-RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred CCcEEEEEccCcceeEEec--cccEEEEEecCCC-ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 4567899999999999987 4489999999998 999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceecccC
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~ 202 (452)
++||.|.+|++||+.............-.............+.++.++|||++++.+ +.++++|-+++.+..-.+.+|
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGH 549 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGH 549 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccc
Confidence 999999999999985322110000000112334566778899999999999999998 588999999999999999999
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
.-+|.|+..+|++ .++++|+.|.+|++|-+.-+.+-..+
T Consensus 550 kLPV~smDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~---------------------------------------- 588 (888)
T KOG0306|consen 550 KLPVLSMDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSF---------------------------------------- 588 (888)
T ss_pred ccceeEEeccCCc-CeEEeccCCCceEEeccccchhhhhh----------------------------------------
Confidence 9999999999998 89999999999999998877665433
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.+|...|+++.|-|....+++++.|+.|+-||-..-..+..+..++ ..|+|++.+|+|.++++++.|.+|++|...
T Consensus 589 ---fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~-~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 589 ---FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH-SEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred ---hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccch-heeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 2899999999999999999999999999999999888888887766 889999999999999999999999999987
Q ss_pred cccccccCChhhhhhhHHH
Q 012994 363 ASEQLGVLHPREQRKHAYH 381 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ 381 (452)
....+-....+......|.
T Consensus 665 de~~~lEeekE~ErEe~yE 683 (888)
T KOG0306|consen 665 DEILILEEEKEGEREEEYE 683 (888)
T ss_pred CcceeeehhhhhhhHHHHH
Confidence 7555544444444444444
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.2e-33 Score=245.29 Aligned_cols=285 Identities=20% Similarity=0.333 Sum_probs=230.2
Q ss_pred hhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----eEEEeecCCCC
Q 012994 36 EKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGA 111 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~h~~~ 111 (452)
+..++........++.+.....+ ..+.||++.|.+++...+| .+|+||+.|.++++|.++++. ++....+|++.
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c-~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYC-QIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred cceEEEEeCCCceEEEecCCCce-EEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 34444333344444443332222 3679999999999977777 899999999999999885442 34556799999
Q ss_pred eeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEE
Q 012994 112 VRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIW 188 (452)
Q Consensus 112 v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~ 188 (452)
|.+++++..+ .+|+++|.|+++++|++...+.... ............+...+++++.+|+..++++++ .+.+||
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~---~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW 490 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF---PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW 490 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccc---cceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence 9999997743 5899999999999999976222111 000011112345778999999999999999998 469999
Q ss_pred eCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC
Q 012994 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
+++.......+.+|...|.|+.|+|.+ +++++++.|++|+||.+.+..++.++.
T Consensus 491 ~le~~~l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fSClkT~e------------------------- 544 (775)
T KOG0319|consen 491 DLEQLRLLGVLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFSCLKTFE------------------------- 544 (775)
T ss_pred cccCceEEEEeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccceeeeeec-------------------------
Confidence 999999999999999999999999988 799999999999999999888777653
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
||...|..+.|-.+|..|++++.||.+++|++.++.+...+..+. ..|++++.+|...+++
T Consensus 545 ------------------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~-DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 545 ------------------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN-DRVWALSVSPLLDMFV 605 (775)
T ss_pred ------------------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc-ceeEEEeecCccceeE
Confidence 899999999999999999999999999999999999998886554 8999999999999999
Q ss_pred EeeCCCcEEEeecccccccccC
Q 012994 349 SGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 349 s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
||+.||.|.+|.=.+.+.....
T Consensus 606 tgg~Dg~i~~wkD~Te~~~~ee 627 (775)
T KOG0319|consen 606 TGGGDGRIIFWKDVTEEEQNEE 627 (775)
T ss_pred ecCCCeEEEEeecCcHHHHHHH
Confidence 9999999999986665544433
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.8e-33 Score=229.37 Aligned_cols=288 Identities=15% Similarity=0.259 Sum_probs=239.1
Q ss_pred ccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
+......+..|.+.|..+.|-++. ..|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.
T Consensus 164 pS~~~~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 164 PSRALFVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred chhhhhhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 444556678899999999999997 889999999999999987665 67778888899999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
+++|++...+....+ ..|...++++.+......+++++ .++++||+....+..++-. ...+.++.
T Consensus 243 ~r~Wnvd~~r~~~TL------------sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL------------SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIV 309 (459)
T ss_pred eeeeeccchhhhhhh------------cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceE
Confidence 999999888654333 33556677777776666566665 4699999999877766553 45566777
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---C
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---G 287 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~ 287 (452)
.++ ..+++|..|+.|++||+++.........++.++++..++++..++.+ +.|..+.++|+++......... -
T Consensus 310 ~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 310 CSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred ecc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccc
Confidence 663 56889999999999999999999999999999999999998885555 9999999999998654433221 1
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC-cEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ-RVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
.....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 1224888999999999999999999999999999998887666644 799999999999999999999999994
No 53
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.7e-32 Score=227.34 Aligned_cols=297 Identities=15% Similarity=0.221 Sum_probs=242.8
Q ss_pred HhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe
Q 012994 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~ 128 (452)
+.|+-++.+.+. .-.+.|.+++|+|..+.-+|+.+. -.+.||+..+......+......|.++.|..||++|+.|+
T Consensus 12 ~~w~~~~~~~~~---ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 12 RYWRQETFPPVH---KEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred hhhhhhcccccc---cccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC
Confidence 345554444432 224589999999987666776664 4799999888877777777778999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCc
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDT 205 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~ 205 (452)
..|.|+|+|+.+... ......+..++....|+|++..+++.+ +.+++||+.+......+.+|.+.
T Consensus 88 ~sG~V~vfD~k~r~i------------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY 155 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVI------------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY 155 (487)
T ss_pred CcCcEEEeccccHHH------------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce
Confidence 999999999655322 223344566777788888776555544 35999999999876789999999
Q ss_pred eEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee
Q 012994 206 VISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 284 (452)
|.|.+|+|..+.++++|+.||.|++||++.. ..+..+.++.++..+.+.|.+..++ ......+++||+.+..+....
T Consensus 156 VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia--sAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 156 VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA--SAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE--EcCCCeEEEEEecCCceehhh
Confidence 9999999998889999999999999999988 7788888999999999999887544 444568999999988888777
Q ss_pred eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 285 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
+..|...|+|+++..++..|++|+-|+.|++||+.+-+....+... ++|.+++.+|+++.++.|..||.+.+=+....
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 7779999999999999999999999999999998877777666544 78999999999999999999999888755443
Q ss_pred c
Q 012994 365 E 365 (452)
Q Consensus 365 ~ 365 (452)
+
T Consensus 312 ~ 312 (487)
T KOG0310|consen 312 K 312 (487)
T ss_pred c
Confidence 3
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.3e-33 Score=235.14 Aligned_cols=282 Identities=20% Similarity=0.271 Sum_probs=235.7
Q ss_pred ceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE
Q 012994 100 RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.... ........+..+|..+.|+.+|..+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-----------~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-----------RCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-----------ceehhhhcchhhhhhhhccccCCee
Confidence 55778899999999999999 88999999999999999997631 1223344566788999999999999
Q ss_pred EEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEcc
Q 012994 179 ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNP 255 (452)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~ 255 (452)
++++ ..+++||.++|+.+..+.. ...++|+.|+|++++.+++|+.|+.|+.||+++++.++.+.. -+.+..+.|.+
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 9987 6799999999999999886 567899999999999999999999999999999998887764 35678899998
Q ss_pred CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee---eeeccCC-
Q 012994 256 MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR---EIYHTKR- 331 (452)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~- 331 (452)
.+.. +++.++++.+++|+.+...........+.-...++..+|+++++++-+.|+.|.+|.+...-.. ..+..+.
T Consensus 353 ~g~r-FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 353 EGRR-FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred CCce-EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 8876 8888999999999999877666666555666778999999999999999999999997643222 1222221
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHH
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 411 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (452)
.+--..+.|||||++|++|+.||.+.+||.++-+++..+. .|...+..+.|||..|..+.+++
T Consensus 432 aGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-----------------ah~~~ci~v~wHP~e~Skvat~~ 494 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-----------------AHDQPCIGVDWHPVEPSKVATCG 494 (503)
T ss_pred cCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-----------------cCCcceEEEEecCCCcceeEecc
Confidence 2456789999999999999999999999999988877664 67788899999999998776654
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=245.86 Aligned_cols=274 Identities=24% Similarity=0.396 Sum_probs=230.4
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeC-CCCceEEEeec
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI-ANRRTVCQYSG 107 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~~ 107 (452)
.++|.+...+.......+.+|.....+ +...+.+|...|++++|+|++ .++++|+.|++|+|||+ ..+..++++.+
T Consensus 166 ~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 166 DFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 367777777777778888888887777 888889999999999999999 89999999999999999 55688999999
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (452)
|...|++++|+|+++++++|+.|++|+|||+.++++ ......+...+.+++|++++.++++++ +.+
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTI 312 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE------------EEeeeccCCceEEEEECCCCCEEEEcCCCccE
Confidence 999999999999999999999999999999988643 334455677899999999999999997 579
Q ss_pred EEEeCCCCC--cceecccCCCc--eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEc---cCCC
Q 012994 186 DIWNHNRSQ--PINSFQWGTDT--VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN---PMEP 258 (452)
Q Consensus 186 ~i~d~~~~~--~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~ 258 (452)
++||+.++. +...+..+... ++++.|+|++ .++++++.|+.+++||++..................++ ..+.
T Consensus 313 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEECCCCceeeeecccCCCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 999999999 55666665554 9999999998 79999999999999999988887777654432112222 2355
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCc-ccceEEEEEcCCCCEEEEEe--CCCeEEEEECC
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGH-ESAVMDIDYSPTGREFVTGS--YDRTIRIFQYN 319 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~--~dg~i~iwd~~ 319 (452)
..+++++.|+.+++||.... .......+| ...+..+.++|..+++++++ .|+.+++|...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCcc-chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 67999999999999999984 444455688 88999999999999999998 78999999764
No 56
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.6e-32 Score=232.20 Aligned_cols=298 Identities=15% Similarity=0.203 Sum_probs=226.9
Q ss_pred ccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce----EEEe-ecCCCCeeEEEEccCCCeEEEEeC
Q 012994 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT----VCQY-SGHQGAVRGLTVSTDGRILVSCGT 129 (452)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~----~~~~-~~h~~~v~~l~~~~~~~~l~s~~~ 129 (452)
+...--.|.+|+..|.++++.|.| ..|++|+.|.+|++||+..... .+.+ ......|.++.|++.|..|++.+.
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CccceEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 334445789999999999999999 9999999999999999875422 1222 223458999999999998888888
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEE
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
....+|+|-..... +-+.-|+-+|-|+ ...++|...++|.
T Consensus 235 ~aqakl~DRdG~~~----------------------------------~e~~KGDQYI~Dm------~nTKGHia~lt~g 274 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEI----------------------------------VEFSKGDQYIRDM------YNTKGHIAELTCG 274 (641)
T ss_pred CcceeEEccCCcee----------------------------------eeeeccchhhhhh------hccCCceeeeecc
Confidence 88999999643211 1111123333332 3345788899999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-e------ecccceEEEccCCCceEEeecCCCeEEEEeCCCcc--c
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-M------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD--E 280 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~ 280 (452)
+|+|.....+++++.||++++||+...+...... . ...+..++|++++.. +++|..||.|.+|+.+... .
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p 353 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRP 353 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCccccc
Confidence 9999998999999999999999998766443332 2 234578999999998 9999999999999986543 3
Q ss_pred cceeeeCccc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec--cCCcCcEEEEEEcCCCCEEEEeeC----
Q 012994 281 AKCVHMGHES--AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVISGSD---- 352 (452)
Q Consensus 281 ~~~~~~~~~~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~---- 352 (452)
...+..+|.. .|+++.||+||++|++-+.|+++++||++..+...... .....+-+.++|||+.++|++|+.
T Consensus 354 ~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~ 433 (641)
T KOG0772|consen 354 VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNG 433 (641)
T ss_pred ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCC
Confidence 3445567877 89999999999999999999999999999765432221 112245688999999999999864
Q ss_pred --CCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHH
Q 012994 353 --DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 411 (452)
Q Consensus 353 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (452)
.|.+.+||..+.+.+..+. -....|..+.|||.+++++...+
T Consensus 434 ~~~g~L~f~d~~t~d~v~ki~-----------------i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 434 MTAGTLFFFDRMTLDTVYKID-----------------ISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred CCCceEEEEeccceeeEEEec-----------------CCCceEEEEeecchhhheeeecC
Confidence 5789999999988877664 22556778899998888776555
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.2e-33 Score=216.45 Aligned_cols=263 Identities=21% Similarity=0.355 Sum_probs=230.3
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
....-+.+--++..+.+|.||.+.|.+...+.+. ..-|+++.|-+-++||.-+|..+..+. |..-|.+++|+.|.++|
T Consensus 38 d~~pmlr~g~tgdwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~l 115 (334)
T KOG0278|consen 38 DGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYL 115 (334)
T ss_pred CCCchhccCCCCCcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhh
Confidence 3333444445677899999999999999999986 778899999999999999999999987 88999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (452)
++|+.+..++|||++..+ ..+.....+.+.|..+.|....+.++++. ++|++||.++++.++.+..
T Consensus 116 ltgg~ekllrvfdln~p~-----------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~- 183 (334)
T KOG0278|consen 116 LTGGQEKLLRVFDLNRPK-----------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF- 183 (334)
T ss_pred hccchHHHhhhhhccCCC-----------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-
Confidence 999999999999997764 34555666778888888887777777643 6899999999999999986
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
..+|+++.++++| ++ ++....+.|.+||..+...+..+..+..+.+.+.+|+. ..+++|++|..++.||..+..+..
T Consensus 184 ~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~fVaGged~~~~kfDy~TgeEi~ 260 (334)
T KOG0278|consen 184 NSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGEEIG 260 (334)
T ss_pred CCCCcceeeccCC-CE-EEEecCceeEEeccccccceeeccCccccccccccCCC-ceEEecCcceEEEEEeccCCceee
Confidence 6889999999988 44 46666789999999999999999999999999999998 679999999999999999988887
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
....+|.++|.|+.|+|+|...++|+.||+|++|.+..++..
T Consensus 261 ~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 261 SYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 767899999999999999999999999999999998876554
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-31 Score=240.30 Aligned_cols=287 Identities=17% Similarity=0.317 Sum_probs=240.1
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
..|..-+..|..++|+|.. ..++++-..|.|++||..-+.++..|..|.++|..++|+|.+.++++|+.|-.|++|+..
T Consensus 3 tkfEskSsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCCCC-CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 3455667889999999997 899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+.+++.+ ...+-.-+..+.|++.-..+++++. +|+||++.+++++..+.+|...|.|..|+|.. .
T Consensus 82 ~rrclft------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-D 148 (1202)
T KOG0292|consen 82 TRRCLFT------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-D 148 (1202)
T ss_pred cceehhh------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-c
Confidence 8755433 4455667888999999999999874 69999999999999999999999999999987 7
Q ss_pred EEEEEecCCeEEEEEccCCCC---------------------------ceEEE---eecccceEEEccCCCceEEeecCC
Q 012994 218 VLATTASDRSITLYDLRMSSP---------------------------ARKVI---MRTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~---------------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
++++++-|-+|++||+..-+. +.+.. +...++-++|+|.-+ ++++|++|
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DD 227 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADD 227 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCc
Confidence 999999999999999753211 01111 123445667777665 48899999
Q ss_pred CeEEEEeCCCcccc-ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCE
Q 012994 268 CNCYSYDSRKLDEA-KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346 (452)
Q Consensus 268 ~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 346 (452)
..+.+|.+...+.- .-...+|.+.|.++-|+|..+++++.+.|++|+|||+...+.+..+...+ +..+.++-+|..++
T Consensus 228 RqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren-dRFW~laahP~lNL 306 (1202)
T KOG0292|consen 228 RQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN-DRFWILAAHPELNL 306 (1202)
T ss_pred ceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-CeEEEEEecCCcce
Confidence 99999988754321 22445999999999999999999999999999999999999998887666 78999999999987
Q ss_pred EEEeeCCCcEEEeeccc
Q 012994 347 VISGSDDTNLRLWKAKA 363 (452)
Q Consensus 347 l~s~~~dg~i~iw~~~~ 363 (452)
+++| .|+-+.||.++.
T Consensus 307 fAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 307 FAAG-HDSGMIVFKLER 322 (1202)
T ss_pred eeee-cCCceEEEEEcc
Confidence 7654 566667777763
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-30 Score=205.61 Aligned_cols=275 Identities=17% Similarity=0.280 Sum_probs=220.4
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC--CCcEEEEe
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT--DCTVKLWN 137 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--dg~v~iwd 137 (452)
+.|..-.+.|+++.|+++| .++++++.|.+++|||..+++.+.++..+.-.|..++|......++.++. |.+|+..+
T Consensus 8 k~f~~~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred cccccCCCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 4455567899999999999 99999999999999999999999999988889999999876666666665 66666666
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+ .+++.++-|.+|...|++++.+|.+ +
T Consensus 87 l----------------------------------------------------~dNkylRYF~GH~~~V~sL~~sP~~-d 113 (311)
T KOG1446|consen 87 L----------------------------------------------------HDNKYLRYFPGHKKRVNSLSVSPKD-D 113 (311)
T ss_pred e----------------------------------------------------ecCceEEEcCCCCceEEEEEecCCC-C
Confidence 5 4556788999999999999999988 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-ccceeee---CcccceE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAKCVHM---GHESAVM 293 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~---~~~~~v~ 293 (452)
.+++++.|++|++||++..++...+.. .....++|.|.|-. ++++.....|.+||++... .+...+. +.....+
T Consensus 114 ~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLi-fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~ 191 (311)
T KOG1446|consen 114 TFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLI-FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT 191 (311)
T ss_pred eEEecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcE-EEEecCCCeEEEEEecccCCCCceeEccCCCCcccee
Confidence 899999999999999997776655543 34456788887754 6666666699999999873 3333333 3356789
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC--cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+.|||||++|+.++..+.+++.|.-+|.....+...... --...+|+||++++++|+.||+|.+|++++|..+..+.
T Consensus 192 ~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 192 DLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred eeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec
Confidence 9999999999999999999999999999887776443311 23578899999999999999999999999999988876
Q ss_pred hhhhhhhHHHHHHHHhhccCccccccccCCCCChh
Q 012994 372 PREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKP 406 (452)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 406 (452)
+. +...+..+.|.|.....
T Consensus 272 ~~----------------~~~~~~~~~fnP~~~mf 290 (311)
T KOG1446|consen 272 GP----------------NGGPVSCVRFNPRYAMF 290 (311)
T ss_pred CC----------------CCCCccccccCCceeee
Confidence 42 34555566677765543
No 60
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=217.89 Aligned_cols=275 Identities=21% Similarity=0.287 Sum_probs=227.0
Q ss_pred CCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC
Q 012994 29 DPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h 108 (452)
.-.++|..............-+|++.++++...+.||++.|+|+.|+.+| .+||||+.+|.|+||+..++.....+...
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e 147 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQE 147 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecc
Confidence 34466644555555556667799999999999999999999999999999 99999999999999999999988888766
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 186 (452)
-..|.=+.|+|.+..|+.|+.||.+.+|.+.++. .......+..++.+-.|.|+|+.++++. |+|+
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcc------------eeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 6778889999999999999999999999998762 3344445677888899999999998885 7899
Q ss_pred EEeCCCCCcceecccC---------------------------------------------------CCceEEEEECCCC
Q 012994 187 IWNHNRSQPINSFQWG---------------------------------------------------TDTVISVRFNPAE 215 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~---------------------------------------------------~~~i~~~~~~~~~ 215 (452)
+||..+++++..+... ...+.|+.+.|..
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 9999998877655410 0011112222211
Q ss_pred --CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 216 --PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 216 --~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
-.++|+|+-||+|.|||+..........+...+..+.|.+ ...+++++.+|.++.||.++.. ....+.+|...|.
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~-l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ-LKFTYTGHQMGIL 372 (399)
T ss_pred cccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccc-eEEEEecCchhee
Confidence 1367889999999999999999999999999999999998 5568899999999999999864 4556779999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+++++|++++++|+|.|++.+||+..
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999874
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-31 Score=209.99 Aligned_cols=252 Identities=17% Similarity=0.303 Sum_probs=204.9
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCC--eEEEEeCCCcEEEE
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR--ILVSCGTDCTVKLW 136 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~~~dg~v~iw 136 (452)
+-.+..|.++|++++.+. .++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.++-. .|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 345788999999999975 7899999999999999999999999999999999999998654 89999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
+... ...+..++.|.+.|+.++++|.+
T Consensus 113 ~~~~----------------------------------------------------W~~~~slK~H~~~Vt~lsiHPS~- 139 (362)
T KOG0294|consen 113 RVGS----------------------------------------------------WELLKSLKAHKGQVTDLSIHPSG- 139 (362)
T ss_pred EcCC----------------------------------------------------eEEeeeecccccccceeEecCCC-
Confidence 9843 34567788899999999999998
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
.+.++.+.|+.+++|++-.++......+......+.|+|.|..+++.+...-.++..|... ....+ .....+.++.
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~--v~~~i--~~~~r~l~~~ 215 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNAS--VFREI--ENPKRILCAT 215 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHh--Hhhhh--hccccceeee
Confidence 7888999999999999999999998888888889999999998777665544444444332 22111 1123466666
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE--cCCCCEEEEeeCCCcEEEeecccc-----ccccc
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDDTNLRLWKAKAS-----EQLGV 369 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~-----~~~~~ 369 (452)
|- ++..|++|+.|+.|.+||.++..+...+. .|...|-++.+ .|++.+|+|++.||.|+|||+... ++++.
T Consensus 216 ~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e 293 (362)
T KOG0294|consen 216 FL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAE 293 (362)
T ss_pred ec-CCceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEE
Confidence 65 66789999999999999999877776664 45588999884 457889999999999999999876 44554
Q ss_pred CCh
Q 012994 370 LHP 372 (452)
Q Consensus 370 ~~~ 372 (452)
++.
T Consensus 294 ~n~ 296 (362)
T KOG0294|consen 294 LNT 296 (362)
T ss_pred eec
Confidence 443
No 62
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.2e-30 Score=236.43 Aligned_cols=230 Identities=20% Similarity=0.284 Sum_probs=186.5
Q ss_pred ccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCeeEEEEccCC-CeEEEEeCCC
Q 012994 61 ALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDC 131 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg 131 (452)
.+.||.+.|++++|+| ++ ++|++|+.||+|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDP-QKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 4789999999999999 66 89999999999999999765 3467789999999999999975 6999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 211 (452)
+|+|||+.++ +.+..+..|...|.+++|
T Consensus 149 tVrIWDl~tg----------------------------------------------------~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 149 VVNVWDVERG----------------------------------------------------KAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEECCCC----------------------------------------------------eEEEEEcCCCCceEEEEE
Confidence 9999999654 224455667889999999
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecc--cceEEEccCCCceEEeec---CCCeEEEEeCCCccccceeee
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTK--SNSISWNPMEPMNFTAAN---EDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~ 286 (452)
+|++ .+|++++.||.|++||+++++.+..+..... ...+.|.+++..++.++. .++.+.+||+++.........
T Consensus 177 spdG-~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 177 NLDG-SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred ECCC-CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 9988 7999999999999999999887776654432 346788888887776663 579999999998766554443
Q ss_pred C-cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 287 G-HESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 287 ~-~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
. +...+....|++++++|++|+ .||.|++||+.++............++..++|.|..
T Consensus 256 ~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 256 LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 3 334566678999999999887 599999999999887766555555678888898853
No 63
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-31 Score=222.03 Aligned_cols=255 Identities=19% Similarity=0.360 Sum_probs=213.4
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----------eEEEeecCCCCeeEEEEccC-CCeEEEEeCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----------TVCQYSGHQGAVRGLTVSTD-GRILVSCGTDC 131 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----------~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg 131 (452)
--|.+.|+.+.+-|+.+..+|+++..+.|.|||..+.. +-..+.+|...-++|+|++. .-.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 34999999999999998899999999999999976431 22367899998899999984 34799999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 211 (452)
+|++||+....... ..-.+...+.+|...|..++|
T Consensus 201 ~i~lwdi~~~~~~~---------------------------------------------~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 201 TICLWDINAESKED---------------------------------------------KVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred cEEEEeccccccCC---------------------------------------------ccccceEEeecCCcceehhhc
Confidence 99999997553210 012245667889999999999
Q ss_pred CCCCCcEEEEEecCCeEEEEEccC--CCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRM--SSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
++....+|++++.|+.+.|||+|+ .++..... +...+.+++|+|.+..++++++.|+++.+||+|++......+.+|
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH 315 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence 999989999999999999999995 33333333 467889999999999999999999999999999999999999999
Q ss_pred ccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCce-------------eeeeccCCcCcEEEEEEcCCCCE-EEEeeCC
Q 012994 289 ESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRS-------------REIYHTKRMQRVFCVKFSCDASY-VISGSDD 353 (452)
Q Consensus 289 ~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~d 353 (452)
...|.++.|||. ...||+++.|+.+.+||+..-.. +...+.+|...|..+.|+|+..+ |++.++|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 999999999994 56899999999999999974211 22558888899999999997664 6789999
Q ss_pred CcEEEeecc
Q 012994 354 TNLRLWKAK 362 (452)
Q Consensus 354 g~i~iw~~~ 362 (452)
+.+.||++.
T Consensus 396 N~LqIW~~s 404 (422)
T KOG0264|consen 396 NILQIWQMA 404 (422)
T ss_pred ceEEEeecc
Confidence 999999986
No 64
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.7e-31 Score=211.38 Aligned_cols=290 Identities=16% Similarity=0.184 Sum_probs=235.4
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC------------C------ceEEEeecCCCCeeEEEEccCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------------R------RTVCQYSGHQGAVRGLTVSTDG 121 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~------------~------~~~~~~~~h~~~v~~l~~~~~~ 121 (452)
..+..|++++.+.+|+||| .++|||+.|..|+|.|++. + -.++++..|..+|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3467899999999999999 9999999999999999861 1 2467788899999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceec
Q 012994 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSF 199 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~ 199 (452)
..|++|+.|++|+++|+...... .....+.....+.++.|+|.|.+++.+.. .+++||+++.++...-
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saK----------rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAK----------RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred heEEeccCCCeEEEEecccHHHH----------HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 99999999999999999654332 23334445668899999999999999874 7999999998876543
Q ss_pred ---ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEE
Q 012994 200 ---QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 200 ---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
..|.+.|+++.+++.+ ++.++++.||.|++||--+++++.++... ..+.+..|..++.+ +++.+.|..+++|
T Consensus 255 nPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky-iLsSG~DS~vkLW 332 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY-ILSSGKDSTVKLW 332 (430)
T ss_pred CcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE-EeecCCcceeeee
Confidence 3578899999999998 79999999999999999888888877532 33445566666554 7788899999999
Q ss_pred eCCCccccceeeeC----cccceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 274 DSRKLDEAKCVHMG----HESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 274 d~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.+.+.......... ...--+...|+....|++.-.. .+.++-||.++......+..+|.+.+..+.-||.+.-++
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~Fm 412 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFM 412 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCcee
Confidence 99887665544321 1122344567777777766553 567999999999888888889999999999999999999
Q ss_pred EeeCCCcEEEeecc
Q 012994 349 SGSDDTNLRLWKAK 362 (452)
Q Consensus 349 s~~~dg~i~iw~~~ 362 (452)
+++.|-.+++|--.
T Consensus 413 TcsdD~raRFWyrr 426 (430)
T KOG0640|consen 413 TCSDDFRARFWYRR 426 (430)
T ss_pred eecccceeeeeeec
Confidence 99999999999654
No 65
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-30 Score=202.84 Aligned_cols=276 Identities=15% Similarity=0.260 Sum_probs=216.1
Q ss_pred cCCCCCCch-hhhhhhHhhhhHHHhhhhhc---ccccccc-ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--
Q 012994 27 NYDPNLRPQ-EKAVEYVRALTAAKLEKIFA---RPFIGAL-DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-- 99 (452)
Q Consensus 27 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~l-~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-- 99 (452)
...-.+||- +...+.......+++|+... -.+...| .+|+..|.+++|+|.| ++|++||.|.++.||.-..+
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecCCCce
Confidence 344456666 34455566667777887763 3344444 6799999999999999 99999999999999986644
Q ss_pred ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
+++..+.||...|.|++|+++|.+||+|+.|..|.||.+..+... ........+...+..+.|+|...+|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf---------ec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF---------ECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE---------EEEeeeccccccccEEEEcCCcceeE
Confidence 678889999999999999999999999999999999999754211 11223345667888999999999999
Q ss_pred EeC--CeEEEEeCC---CCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEc
Q 012994 180 TAG--AQVDIWNHN---RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN 254 (452)
Q Consensus 180 ~~~--~~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 254 (452)
+++ .+|++|.-. ...+++.+.+|...|.+++|++.| ..|++++.|++++||-..+. ....+......+.|.
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD 242 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcceEeeeeccC---cchhcccceEeeeec
Confidence 987 679999866 346789999999999999999988 78999999999999986522 112233455667777
Q ss_pred cCCCceEEeecCCCeEEEEeCCCc------cccceeeeCcccceEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 012994 255 PMEPMNFTAANEDCNCYSYDSRKL------DEAKCVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~ 319 (452)
...+++++.|+.|++|..... .........|...|+++.|+|. .+.|++|+.||.|++|.+.
T Consensus 243 ---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 ---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 557999999999999976532 1122233478889999999994 6889999999999999874
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.4e-31 Score=201.60 Aligned_cols=266 Identities=15% Similarity=0.212 Sum_probs=219.9
Q ss_pred hhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEc
Q 012994 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 118 (452)
.........+++|+...+.++++..||...|..++.+.|+ ..|++|+.|..|.+||+++|+.++.+.+|.+.|+.++|+
T Consensus 32 ~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 32 CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred EEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEcccCeeeeecccccceeeEEEec
Confidence 3334456678999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCccee
Q 012994 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINS 198 (452)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~ 198 (452)
.+...+++|+.|.++++||.++. +.+|++.
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~--------------------------------------------------s~ePiQi 140 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSR--------------------------------------------------SFEPIQI 140 (307)
T ss_pred CcceEEEeccccceeEEEEcccC--------------------------------------------------CCCccch
Confidence 99999999999999999999765 3345666
Q ss_pred cccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 199 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
+....+.|.++.... ..+++|+.||+++.||++.+..... ....++++++++++++. .++++.++.+++.|..+.
T Consensus 141 ldea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNC-SLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCE-EEEeeccceeeecccchh
Confidence 666678899998874 6689999999999999998865433 35778899999999876 667888999999998875
Q ss_pred cccceeeeCcccc--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 279 DEAKCVHMGHESA--VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 279 ~~~~~~~~~~~~~--v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
+.. ..+.+|.+. -..++++.....+++|+.||.|++||+.....+..+..+..-.+++++++|.-.-++++.. +.+
T Consensus 216 klL-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~ 293 (307)
T KOG0316|consen 216 KLL-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGD 293 (307)
T ss_pred HHH-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cce
Confidence 433 345577654 3455677777899999999999999999988887776665444899999997766666653 456
Q ss_pred EEeecc
Q 012994 357 RLWKAK 362 (452)
Q Consensus 357 ~iw~~~ 362 (452)
.+|.-.
T Consensus 294 ~~~~~~ 299 (307)
T KOG0316|consen 294 LFWYQE 299 (307)
T ss_pred eceeeh
Confidence 677543
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.4e-31 Score=231.44 Aligned_cols=260 Identities=19% Similarity=0.295 Sum_probs=229.0
Q ss_pred HHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEccCCCeEE
Q 012994 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILV 125 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~ 125 (452)
.+.+|+...++......-+.+.|+++.|+++| .+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~ls 274 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLS 274 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEE
Confidence 45688888777665555568999999999999 9999999999999999999999999988 99999999998 56899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCC
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~ 203 (452)
+|+.||.|..+|++....... ....+...++.+.|++++.++++++. .+.|||.....+...+..|.
T Consensus 275 sGsr~~~I~~~dvR~~~~~~~-----------~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 275 SGSRDGKILNHDVRISQHVVS-----------TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred EecCCCcEEEEEEecchhhhh-----------hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc
Confidence 999999999999987643211 24557788999999999999999984 59999999999999999999
Q ss_pred CceEEEEECCCCCcEEEEEe--cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe-ecCCCeEEEEeCCCccc
Q 012994 204 DTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA-ANEDCNCYSYDSRKLDE 280 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~ 280 (452)
..|.+++|+|....+||+|+ .|++|++||..++..+..+....++..+.|++....++.+ |..++.|.+|+..+...
T Consensus 344 aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~ 423 (484)
T KOG0305|consen 344 AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL 423 (484)
T ss_pred eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce
Confidence 99999999999889999976 5999999999999999999999999999999998766555 66788999999988544
Q ss_pred cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 281 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 281 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
...+.+|...|..+++||||..+++|+.|.++++|++-..
T Consensus 424 -~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 424 -VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred -eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4456699999999999999999999999999999998764
No 68
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.98 E-value=1.4e-29 Score=227.45 Aligned_cols=313 Identities=16% Similarity=0.270 Sum_probs=252.3
Q ss_pred hhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCC-
Q 012994 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR- 122 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~- 122 (452)
.....++|++.+++.+.+++++...|+++.-+|-= ..+|.|..+|+|.++++..++.+.+++...+.|++++|..||.
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP 258 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe
Confidence 34456899999999999999999999999999985 8999999999999999999999999995469999999999987
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCC-----------------------------------------------CCCC
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTD-----------------------------------------------NSSE 155 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-----------------------------------------------~~~~ 155 (452)
.|++|+..|.+.+||++..+........+ .+..
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~ 338 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS 338 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch
Confidence 56677778999999994433321111000 0000
Q ss_pred Ce------------------------------------------------------------------------------
Q 012994 156 PL------------------------------------------------------------------------------ 157 (452)
Q Consensus 156 ~~------------------------------------------------------------------------------ 157 (452)
.+
T Consensus 339 ~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 339 CIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred heeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 00
Q ss_pred ------------------eEEE------ecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceec---ccCCCceEE
Q 012994 158 ------------------AVYV------WKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSF---QWGTDTVIS 208 (452)
Q Consensus 158 ------------------~~~~------~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~---~~~~~~i~~ 208 (452)
.... ....+.+++.++.|++.+.+ .|.|.+|++.+|-....+ ..|..+|++
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTG 498 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeE
Confidence 0000 01234566666667665554 378999999999887777 578999999
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
++....+ +.+++++.+|.+.+||.........+........+.++..... ++++..+-.|+++|..+... .+.+.+|
T Consensus 499 la~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l-~a~~~ddf~I~vvD~~t~kv-vR~f~gh 575 (910)
T KOG1539|consen 499 LAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL-LAIALDDFSIRVVDVVTRKV-VREFWGH 575 (910)
T ss_pred EEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh-hhhhcCceeEEEEEchhhhh-hHHhhcc
Confidence 9998877 7899999999999999999988888888888888888776554 77888999999999987543 4455699
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC-CcEEEeecc
Q 012994 289 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-TNLRLWKAK 362 (452)
Q Consensus 289 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~ 362 (452)
.+.|++++|||||++|++++.|++|++||+.++.++..+... .+.+++.|||+|.+|+|...| .-|++|.-.
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd--~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD--SPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC--CcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999999999999999999999999998887665 689999999999999999888 669999644
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=5.8e-30 Score=233.75 Aligned_cols=303 Identities=21% Similarity=0.310 Sum_probs=244.2
Q ss_pred HhhhhHHHhhhhhcccccccccc-ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE-eecCCCCeeEEEEcc
Q 012994 42 VRALTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVST 119 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~ 119 (452)
.+.......|+....+....+.+ |...+.|..|.. .++++++.|++|++||..++..+.. +.+|.+.|.++++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~ 259 (537)
T KOG0274|consen 183 RRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS 259 (537)
T ss_pred hhhhhccccccccccccceeecccCcchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec
Confidence 33333344444443343445554 677899999993 6799999999999999999998888 999999999999987
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE--eCCeEEEEeCCCCCcce
Q 012994 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT--AGAQVDIWNHNRSQPIN 197 (452)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~~ 197 (452)
-+.+|++|+.|.++++||..++.+...+. .+.+.+.++... ...+++ .+.+|++|++.++..+.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~------------gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~ 325 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQ------------GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLN 325 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEec------------CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEE
Confidence 77899999999999999999886544433 233444444333 334444 44689999999999999
Q ss_pred ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCC
Q 012994 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSR 276 (452)
Q Consensus 198 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 276 (452)
.+.+|.++|.++..+ + .++++|+.||+|++||+.+.+++..+.. ...+.++.+.+. ..++.|+.|+.|++||++
T Consensus 326 l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred EeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCC
Confidence 999999999999998 3 6899999999999999999999888875 344556655543 679999999999999999
Q ss_pred CccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 277 KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
+.......+.+|..-+.++.+ .+++|++++.||.|++||..++.++..+...+...|+.+++. ...+++++.||.+
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~ 476 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSV 476 (537)
T ss_pred chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCee
Confidence 986666677789888876655 668999999999999999999999999877555889999886 4578889999999
Q ss_pred EEeecccccccccC
Q 012994 357 RLWKAKASEQLGVL 370 (452)
Q Consensus 357 ~iw~~~~~~~~~~~ 370 (452)
++||+.++++...+
T Consensus 477 ~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 477 KLWDLRSGTLIRTL 490 (537)
T ss_pred EEEecccCchhhhh
Confidence 99999999998766
No 70
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.5e-29 Score=228.58 Aligned_cols=257 Identities=19% Similarity=0.214 Sum_probs=195.3
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE-------------EEeecCCCCeeEEEEcc-CCCeEEEEeCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-------------CQYSGHQGAVRGLTVST-DGRILVSCGTD 130 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~l~~~~-~~~~l~s~~~d 130 (452)
|-..|.....++++ ..+++++.+.....|+...+..+ ..+.+|.+.|++++|+| ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 45566777777776 55677777777777775443222 23678999999999999 88899999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
|+|++||+..+.... ....++..+.+|...|.+++
T Consensus 98 gtIkIWdi~~~~~~~---------------------------------------------~~~~~l~~L~gH~~~V~~l~ 132 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQ---------------------------------------------NISDPIVHLQGHTKKVGIVS 132 (493)
T ss_pred CEEEEEecCCCcccc---------------------------------------------ccCcceEEecCCCCcEEEEE
Confidence 999999997542110 01234556778899999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
|+|.+.++|++++.|+.|++||+.++.....+. +...+.+++|+|++. ++++++.|+.+++||.++.... ....+|.
T Consensus 133 f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v-~tl~~H~ 210 (493)
T PTZ00421 133 FHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIV-SSVEAHA 210 (493)
T ss_pred eCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEE-EEEecCC
Confidence 999876899999999999999999887776665 345688999999875 5888999999999999986543 3445676
Q ss_pred cc-eEEEEEcCCCCEEEEEe----CCCeEEEEECCCCce-eeeeccCCcCcEEEEEEcCCCCEEEEee-CCCcEEEeecc
Q 012994 290 SA-VMDIDYSPTGREFVTGS----YDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAK 362 (452)
Q Consensus 290 ~~-v~~~~~s~~g~~l~s~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 362 (452)
+. +..+.|.+++..+++++ .|+.|++||+++... ...........+....|++++++|++++ .||.|++||+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence 54 45678999888877654 478999999987543 2222223334566778999999999887 59999999999
Q ss_pred ccccccc
Q 012994 363 ASEQLGV 369 (452)
Q Consensus 363 ~~~~~~~ 369 (452)
+++.+..
T Consensus 291 ~~~~~~~ 297 (493)
T PTZ00421 291 NERLTFC 297 (493)
T ss_pred CCceEEE
Confidence 8886654
No 71
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4.8e-30 Score=225.23 Aligned_cols=270 Identities=26% Similarity=0.403 Sum_probs=224.4
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (452)
++|.............+.+|+.........+.+|...+.++.|+|++ +++++++.||.|++||+.+++.+..+..|...
T Consensus 17 ~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~ 95 (289)
T cd00200 17 FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGHTSY 95 (289)
T ss_pred EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEeccCCc
Confidence 33433333333445566778877777778889999999999999998 89999999999999999988888889999999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
|.++.|++++.++++++.||.|.+||+.+++... ....+...+.++.+++++.++++++ +.+.+||
T Consensus 96 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT------------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE------------EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 9999999998888888889999999997553221 1223456789999999988888874 6899999
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE-EeecccceEEEccCCCceEEeecCCC
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-IMRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
+.+++.+..+..|...+.++.|+|++ ..+++++.||.|++||++.......+ .....+..+.|+|+ ..++++++.++
T Consensus 164 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~ 241 (289)
T cd00200 164 LRTGKCVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSEDG 241 (289)
T ss_pred ccccccceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCCC
Confidence 99999999998888899999999988 67778888999999999988777776 45557889999998 56677777899
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
.+++||........ .+..|...|.+++|+|++++|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQ-TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEE-EccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998754433 3447888999999999999999999999999996
No 72
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-30 Score=205.96 Aligned_cols=315 Identities=20% Similarity=0.299 Sum_probs=236.7
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.+++.|.||.++|..++..... ..+.+++.|.+.+||.++++.++..+.||.+.|+++.|++.+.++++++.|++.+||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCC-cceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 4677889999999999998886 789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC--CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 137 NVPVATLTDSDD--STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 137 d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
...-.-...... ......+.............-....|+. .| ..++..+.+|...|.+..|...
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~-------ti-------RvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH-------TI-------RVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc-------ee-------eeeeeeeeccccceEehhhhcC
Confidence 742211110000 0000000000000011111111111111 11 2367788899999999999987
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
+ ..+++++.|.+-.+||+.++..+..+... ...+.++.+|.. .++++.+.|.+.++||.+..-.....+.+|...|+
T Consensus 284 g-~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 284 G-QQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT 361 (481)
T ss_pred c-ceeeeeeccccceeeeeccCceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence 7 78899999999999999999998887654 344556666655 45888999999999999987778888999999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
++.|.-+ ..+++|+.|.+|++||+++.+. +..+... .+++.++.+..+..|+.--++..|++||++ |..+..++.
T Consensus 362 S~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPr 437 (481)
T KOG0300|consen 362 SVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPR 437 (481)
T ss_pred EEEEecC-CceeecCCCceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecC-CCccccCCc
Confidence 9999876 4689999999999999998754 3344333 789999999888899988889999999996 445555532
Q ss_pred hhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 373 REQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
. .+-+|...+.+.+|.-.-|
T Consensus 438 t------------sRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 438 T------------SRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred c------------cccccceeeeeeeccccCc
Confidence 2 2337888888888865444
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=215.11 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=227.9
Q ss_pred eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE
Q 012994 101 TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 101 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
..+.+..|...|+-+.||++|++|||++.|.+..+|++...... .-......+..+|..+.|+||.+++++
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---------kl~~tlvgh~~~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---------KLKKTLVGHSQPVSYIMWSPDDRYLLA 286 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce---------eeeeeeecccCceEEEEECCCCCeEEe
Confidence 34567789999999999999999999999999999998654210 123345567788999999999999999
Q ss_pred eCC--eEEEEeCCCCCcceeccc-CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE-EeecccceEEEccC
Q 012994 181 AGA--QVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-IMRTKSNSISWNPM 256 (452)
Q Consensus 181 ~~~--~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~ 256 (452)
++. .+.+||..++.....+.. +...+.+++|.|++ ..+++|+.|+++..||+.......-- .-...+..++..++
T Consensus 287 Cg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred cCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 883 599999999998877754 36789999999999 67899999999999998765422111 11245678899999
Q ss_pred CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC-cE
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ-RV 335 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v 335 (452)
|..+++++ .|..+++|+......... .....+|+++++|.+|+++++.-.+..+++||++....+..+.++..+ -+
T Consensus 366 gk~vl~v~-~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 366 GKYVLLVT-VDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred CcEEEEEe-cccceeeechhhhhhhcc--ccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 99866655 888999998776443322 234568999999999999999999999999999987777776554422 34
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHH
Q 012994 336 FCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLR 414 (452)
Q Consensus 336 ~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 414 (452)
-.-+|-- +..++++|++|+.|+||+..+|+++.++. +|...+++++|.|..|.++.+++++.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-----------------GHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-----------------GHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-----------------CCcceeeEEecCCCCHHHhhccCCCC
Confidence 4556654 55899999999999999999999999886 78899999999999999998877654
Q ss_pred H
Q 012994 415 R 415 (452)
Q Consensus 415 ~ 415 (452)
.
T Consensus 506 t 506 (519)
T KOG0293|consen 506 T 506 (519)
T ss_pred e
Confidence 3
No 74
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.2e-28 Score=186.16 Aligned_cols=285 Identities=18% Similarity=0.287 Sum_probs=226.6
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC------C-----ce----EEEeecCCCCeeEEEEccCCCeEEEEeC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------R-----RT----VCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~------~-----~~----~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 129 (452)
-+..|.+++|+|.| .+.++|+...+++|..... + ++ ...-+.|.+.|+|.+|+|+|.+|++|+.
T Consensus 31 dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCC-ceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 46789999999999 9999999999998875431 1 11 1223568999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC----CCCeEEEeC-Ce--EEEEeCCCCCcceecccC
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW----EGDLFATAG-AQ--VDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~--i~i~d~~~~~~~~~~~~~ 202 (452)
|.+|++.-++...+... ........+.+.+..++|-. .+.++++++ |+ |.+-|..+++....+.+|
T Consensus 110 dk~ik~l~fn~dt~~~~-------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNAT-------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred CceEEEEeccccccccc-------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 99999988765543222 34556667788888888854 456777776 44 777789999999999999
Q ss_pred CCceEEEE-ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee--------cccceEEEccCCCceEEeecCCCeEEEE
Q 012994 203 TDTVISVR-FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR--------TKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 203 ~~~i~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
.+.|.++- |+ + .++++|+.|.+|++||++-..++..+... ..+..++..|.++ ++++|..|..+.+|
T Consensus 183 tghilalyswn--~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~dssc~ly 258 (350)
T KOG0641|consen 183 TGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLY 258 (350)
T ss_pred cccEEEEEEec--C-cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccCCCceEEE
Confidence 99998874 44 3 78999999999999999988887776431 3456777888776 48899999999999
Q ss_pred eCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG---RSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 274 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
|++..... +.+..|...|.++.|||...|+++|+.|..|++-|+... +........|...+..+.|+|..--+++.
T Consensus 259 dirg~r~i-q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 259 DIRGGRMI-QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred EeeCCcee-eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 99986554 455589999999999999999999999999999999753 22223344555778889999998889999
Q ss_pred eCCCcEEEeecc
Q 012994 351 SDDTNLRLWKAK 362 (452)
Q Consensus 351 ~~dg~i~iw~~~ 362 (452)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999764
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=197.56 Aligned_cols=263 Identities=19% Similarity=0.275 Sum_probs=213.1
Q ss_pred hhHhhhhHHHhhhhhccccccc--cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012994 40 EYVRALTAAKLEKIFARPFIGA--LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 117 (452)
+.......+.+|++....+... ..||.+.|-.++|+|..+.+|++++.|.+|++||+..+++...+....+.| -+.|
T Consensus 36 asgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~w 114 (313)
T KOG1407|consen 36 ASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITW 114 (313)
T ss_pred eecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEE
Confidence 3334444556677665555544 489999999999999988999999999999999999999998887555555 4899
Q ss_pred ccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE-EEeC-CeEEEEeCCCCCc
Q 012994 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF-ATAG-AQVDIWNHNRSQP 195 (452)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~i~i~d~~~~~~ 195 (452)
+|+|.+++.++.|..|.+.|..+.+.... ......+.-+.|+.++.++ ++.| |.|.|......++
T Consensus 115 sp~g~~~~~~~kdD~it~id~r~~~~~~~-------------~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp 181 (313)
T KOG1407|consen 115 SPDGEYIAVGNKDDRITFIDARTYKIVNE-------------EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP 181 (313)
T ss_pred cCCCCEEEEecCcccEEEEEecccceeeh-------------hcccceeeeeeecCCCCEEEEecCCceEEEEecccccc
Confidence 99999999999999999999987644322 2233344556666665554 4445 7899999999999
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
+..++.|.....|+.|+|+| ++||+|+.|..+.+||+...-+.+.+
T Consensus 182 v~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELiC~R~i--------------------------------- 227 (313)
T KOG1407|consen 182 VQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELICERCI--------------------------------- 227 (313)
T ss_pred ccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhhhheee---------------------------------
Confidence 99999999999999999999 89999999999999999766555443
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC--
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-- 353 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-- 353 (452)
..+.-+|..+.||.||++||+|+.|..|-|=++++|..+...+.. ++...++|+|...+|+.+++|
T Consensus 228 ----------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~--~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 228 ----------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE--GPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ----------ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc--CCceeEEecCCCceeeEEecCCC
Confidence 256778999999999999999999999999999999988776443 789999999999999987764
Q ss_pred -------CcEEEeecc
Q 012994 354 -------TNLRLWKAK 362 (452)
Q Consensus 354 -------g~i~iw~~~ 362 (452)
|.+++|-+.
T Consensus 296 ~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 296 GDSNREAGTVKIFGLS 311 (313)
T ss_pred CccccccceeEEecCC
Confidence 456666543
No 76
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-29 Score=198.28 Aligned_cols=270 Identities=15% Similarity=0.284 Sum_probs=222.0
Q ss_pred HhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC
Q 012994 42 VRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 121 (452)
......+.+|-...+..+.++.||++.|.|++.+-+. .+++||+.|.++++||+++|+++..++ -..+|..+.|+++|
T Consensus 28 caKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g 105 (327)
T KOG0643|consen 28 CAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG 105 (327)
T ss_pred ecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC
Confidence 3445556778888899999999999999999999997 999999999999999999999999988 57799999999999
Q ss_pred CeEEEEeC-----CCcEEEEeCCCCCCCCCCCCCCCCCC-CeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC
Q 012994 122 RILVSCGT-----DCTVKLWNVPVATLTDSDDSTDNSSE-PLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS 193 (452)
Q Consensus 122 ~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~ 193 (452)
++++.+.. .+.|.++|++...... .... ...+......++..-|.|-+..++++. |.|.+||+.++
T Consensus 106 n~~l~~tD~~mg~~~~v~~fdi~~~~~~~------~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 106 NLILASTDKQMGYTCFVSVFDIRDDSSDI------DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred cEEEEEehhhcCcceEEEEEEccCChhhh------cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 98777643 4789999997543210 0122 344455667889999999999999997 68999999997
Q ss_pred C-cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCe-EE
Q 012994 194 Q-PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCN-CY 271 (452)
Q Consensus 194 ~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~ 271 (452)
+ .+.....|...|+.++++++. .++++++.|.+-++||+++...+.++....++++.+++|....+++.|+.+.. +.
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVT 258 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVT 258 (327)
T ss_pred ceeeechhhhccccccccccCCc-ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeee
Confidence 4 556667899999999999988 79999999999999999999999999999999999999999888877766532 22
Q ss_pred EEeCCCc-----------cccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 272 SYDSRKL-----------DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 272 ~~d~~~~-----------~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.-+.+.. ++..-...+|-++|++++|+|+|+..++|+.||.|++.-+..
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 2222221 122233459999999999999999999999999999986654
No 77
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.7e-28 Score=224.84 Aligned_cols=235 Identities=15% Similarity=0.253 Sum_probs=181.6
Q ss_pred eeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec
Q 012994 85 GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK 163 (452)
Q Consensus 85 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (452)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||+|++||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----------------- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence 677899999998887888889999999999999996 78999999999999999975421000
Q ss_pred CCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE
Q 012994 164 NSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
....++..+.+|...|.+++|+|++..++++++.|+.|++||++++.....+.
T Consensus 113 ---------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~ 165 (568)
T PTZ00420 113 ---------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN 165 (568)
T ss_pred ---------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 00112344567889999999999986677899999999999999988777776
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE-----EEEcCCCCEEEEEeCCC----eEE
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD-----IDYSPTGREFVTGSYDR----TIR 314 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~-----~~~s~~g~~l~s~~~dg----~i~ 314 (452)
....+.+++|+|++.. +++++.|+.+++||+++.... ..+.+|.+.+.. ..|++++.+|++++.|+ .|+
T Consensus 166 ~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i-~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~Vk 243 (568)
T PTZ00420 166 MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIA-SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMK 243 (568)
T ss_pred cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEE-EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEE
Confidence 6677889999999875 677788999999999986554 445678765433 34568999999988774 799
Q ss_pred EEECCC-CceeeeeccC-CcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 315 IFQYNG-GRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 315 iwd~~~-~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|||++. +..+...... ..+.+......++|.++++|+.|+.|++|++..+.
T Consensus 244 LWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 244 LWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred EEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 999995 4444443222 22333334445568899999999999999997663
No 78
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=7.3e-29 Score=227.32 Aligned_cols=247 Identities=19% Similarity=0.288 Sum_probs=185.5
Q ss_pred hhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--------eEEEeecCCCCeeEE
Q 012994 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--------TVCQYSGHQGAVRGL 115 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l 115 (452)
.+..+++|+....+.+..+.+|.+.|.+++|+|+...+|++|+.||+|+|||+.++. ++..+.+|...|.++
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 344567787777778889999999999999999743899999999999999997642 345678999999999
Q ss_pred EEccCCCe-EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCC
Q 012994 116 TVSTDGRI-LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR 192 (452)
Q Consensus 116 ~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~ 192 (452)
+|+|++.. |++++.|++|++||+.++.. .....+...+.+++|+++|.++++++ +.+++||+++
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~-------------~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs 198 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKR-------------AFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK 198 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcE-------------EEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCC
Confidence 99998875 57899999999999987632 12223456789999999999999875 6799999999
Q ss_pred CCcceecccCCCceEEE-----EECCCCCcEEEEEecCC----eEEEEEccCC-CCceEEEeecccceEEEccCCCceEE
Q 012994 193 SQPINSFQWGTDTVISV-----RFNPAEPNVLATTASDR----SITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 193 ~~~~~~~~~~~~~i~~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (452)
++.+..+.+|.+.+.+. .|++++ .++++++.|+ .|+|||++.. .++....+.
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld----------------- 260 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTSALVTMSID----------------- 260 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCCceEEEEec-----------------
Confidence 99999999888765433 344666 5677776664 7999999853 333222110
Q ss_pred eecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
.+.+.+......++|.++++|+.|+.|++|++..+.....-...+..++.+++|.|
T Consensus 261 ------------------------~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~P 316 (568)
T PTZ00420 261 ------------------------NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLP 316 (568)
T ss_pred ------------------------CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcc
Confidence 12233333333556889999999999999999877544333334457788999999
Q ss_pred CCC
Q 012994 343 DAS 345 (452)
Q Consensus 343 ~~~ 345 (452)
...
T Consensus 317 kr~ 319 (568)
T PTZ00420 317 KQI 319 (568)
T ss_pred ccc
Confidence 653
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.5e-29 Score=217.99 Aligned_cols=274 Identities=16% Similarity=0.248 Sum_probs=223.2
Q ss_pred EEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
-+.|+.. +.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||....+........
T Consensus 182 lldWss~--n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWSSA--NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred HhhcccC--CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 3567754 5666665 458999999998866655555889999999999999999999999999999877554433321
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCccee-cccCCCceEEEEECCCCCcEEEEEecCCe
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLATTASDRS 227 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 227 (452)
+...+-+++|. +..+.+++ +.|..+|++..+.... +.+|...|..+.|++++ .++++|+.|+.
T Consensus 259 -----------h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~ 324 (484)
T KOG0305|consen 259 -----------HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNV 324 (484)
T ss_pred -----------cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccc
Confidence 45566677777 55555554 6799999998877666 88899999999999998 89999999999
Q ss_pred EEEEEccCCCCceEEE-eecccceEEEccCCCceEEeec--CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEE
Q 012994 228 ITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAAN--EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 304 (452)
Q Consensus 228 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 304 (452)
+.|||.....+...+. +...+..++|+|-...++++|+ .|+.|++||..+......+.. .+.|.+|.|++..+-|
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi 402 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKEL 402 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEE
Confidence 9999997777666654 5677889999999999999865 589999999998766655543 4679999999988777
Q ss_pred EEE--eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 305 VTG--SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 305 ~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
+++ ..++.|.||++.+.+....+ .+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 403 ~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 403 LSTHGYSENQITLWKYPSMKLVAEL-LGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEecCCCCCcEEEEeccccceeeee-cCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 664 35778999999997777666 455588999999999999999999999999998764
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=196.64 Aligned_cols=274 Identities=18% Similarity=0.246 Sum_probs=218.4
Q ss_pred EEEEeCCCCcceEEEee-------CCCcEEEEeCCCCceEEEee--cCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCC
Q 012994 70 SCMAKNPNYLKGFFSGS-------MDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 70 ~~~~~~~~~~~~l~tg~-------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~ 139 (452)
.++.|+|--.++||.+. ..|.+.|-++...+-+..+. .-...+..++|+++ .+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 57889996556665542 36889999986444443332 24678999999994 4678899999999999963
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
. ...++..++.|...|.++.|++.....+
T Consensus 92 ~---------------------------------------------------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ 120 (311)
T KOG0277|consen 92 M---------------------------------------------------PSKPIHKFKEHKREVYSVDWNTVRRRIF 120 (311)
T ss_pred C---------------------------------------------------CCcchhHHHhhhhheEEeccccccceeE
Confidence 2 2346888899999999999999888889
Q ss_pred EEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
++++.|++|++||....+.+.++.. ...+....|+|..+.++++++.|+.+++||++...+... +..|...|.++.|+
T Consensus 121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWS 199 (311)
T ss_pred EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeeccc
Confidence 9999999999999999888888764 345678899999999999999999999999998866665 67899999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC-CCEEEEeeCCCcEEEeecccccccccCChhhhh
Q 012994 299 P-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376 (452)
Q Consensus 299 ~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 376 (452)
. +.+.|+||+.|+.|+.||++.-+.......+|.-.|..+.|||. ..+|++++.|-+++|||...+...
T Consensus 200 ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~--------- 270 (311)
T KOG0277|consen 200 KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA--------- 270 (311)
T ss_pred ccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh---------
Confidence 8 66789999999999999999876544445677788999999995 457899999999999998754332
Q ss_pred hhHHHHHHHHhhccCccccccccCCCCChhhHHHH
Q 012994 377 KHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAA 411 (452)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (452)
......|..-+.++.|.+..|..+...+
T Consensus 271 -------~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 271 -------IETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred -------hhhhhccceEEeccccccccCceeeecc
Confidence 1112256677788888888776665444
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=196.74 Aligned_cols=268 Identities=19% Similarity=0.276 Sum_probs=212.5
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-CceE-EEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-RRTV-CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
.-.+.|.+|+|||....+++.||.||+|++|+++. +..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45789999999996547788999999999999986 3332 334579999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC--eEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD--LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
.....-.+..++.++.|-+... .+++++ .+++.||.+...++..+.. .+.+.++..-. .
T Consensus 105 -------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~---p 167 (347)
T KOG0647|consen 105 -------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLY---P 167 (347)
T ss_pred -------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhccC---c
Confidence 4556677788888888877666 777776 6799999999999988876 56777776653 5
Q ss_pred EEEEEecCCeEEEEEccCCCCceEE---EeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-ccceeeeCcc----
Q 012994 218 VLATTASDRSITLYDLRMSSPARKV---IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAKCVHMGHE---- 289 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~---- 289 (452)
+++++..+..|.+|++++....... .+.....+++...+.... +.|+-+|.+.+..+.... .....+..|.
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~ 246 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS 246 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce-EeeeecceEEEEecCCCCccCceeEEEeccCCC
Confidence 7888889999999999776544332 245667888888887774 888888888877766532 2222333333
Q ss_pred -----cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 290 -----SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 290 -----~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
..|++++|+|.-..|+|++.||++.+||-.....+...... ..+|++.+|+.+|.+++.+
T Consensus 247 ~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 247 VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEE
Confidence 36889999998889999999999999999877766665444 4899999999999988765
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.5e-29 Score=208.09 Aligned_cols=286 Identities=17% Similarity=0.301 Sum_probs=223.5
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE----EE-------------e-ecCCCCeeEEEEccC
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV----CQ-------------Y-SGHQGAVRGLTVSTD 120 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~----~~-------------~-~~h~~~v~~l~~~~~ 120 (452)
...+..|.-+|.||+++|++ .+.++++.||+|.-|++.+++.. .. - .+|...|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 45667899999999999998 99999999999999999877532 11 1 268889999999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCccee
Q 012994 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINS 198 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~ 198 (452)
|+||++|+.|..|.||+..+...+.. ...+...|.+++|.....-+.++ +..+.+|+++....+.+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~------------~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKV------------FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhc------------ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHH
Confidence 99999999999999999988744322 34556777888887655544444 47899999999999999
Q ss_pred cccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 199 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
+.+|.+.|.++.....+ ..+-+|+.|+++++|++.....+........+.+++|..+. -|++|+.+|.|.+|++.+.
T Consensus 282 lyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HhCCccceeeechhccc-ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeeccc
Confidence 99999999999988766 67777779999999999555444444445567788876554 4899999999999999887
Q ss_pred cccceeeeCc-----------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeeeccCCcCcEEEEEEcCCCC
Q 012994 279 DEAKCVHMGH-----------ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 279 ~~~~~~~~~~-----------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
.+......+| ..+|++++..|...++|+|+.+|.|++|-+..+.. ...+...-.+.|++++|+++|+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGK 438 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCC
Confidence 6655444333 23899999999999999999999999999998722 1222222347899999999999
Q ss_pred EEEEe-eCCCcEEEee
Q 012994 346 YVISG-SDDTNLRLWK 360 (452)
Q Consensus 346 ~l~s~-~~dg~i~iw~ 360 (452)
.|++| +....+--|-
T Consensus 439 ~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEecccccccceee
Confidence 66655 4444444443
No 83
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=218.21 Aligned_cols=261 Identities=20% Similarity=0.330 Sum_probs=220.9
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 103 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
+++..++..|.++.|+|...+++++-.+|.|.|||.++..++.++... .-++.+..|-+..+.+++++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~------------~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS------------EVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec------------ccchhhheeeeccceEEEec
Confidence 345568899999999999999999999999999999988665554333 44566667777778888887
Q ss_pred --CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEe-ecccceEEEccCCC
Q 012994 183 --AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIM-RTKSNSISWNPMEP 258 (452)
Q Consensus 183 --~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~ 258 (452)
..|++|+.++++.+..|..|.+.|.+++.+|..+ ++++++.|-.|++||.... .+.+.+.. ..-+.+++|+|.+.
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 4699999999999999999999999999999985 7889999999999998765 34455543 45578999999999
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEE
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG--REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
..|++++-|+++.+|.+...... ..+.+|...|+++++-+.| .+|++|+.|.+|+|||.++..++.++..+ ...|.
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~n-fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs 231 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPN-FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVS 231 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCc-eeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccce
Confidence 99999999999999999876544 4556999999999998854 69999999999999999999999888554 47899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhh
Q 012994 337 CVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKH 378 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 378 (452)
.+.|+|.-.+++||+.||+++||+..+.++..++.-...+.+
T Consensus 232 ~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW 273 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVW 273 (794)
T ss_pred EEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEE
Confidence 999999999999999999999999999988777654444433
No 84
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=8.8e-28 Score=192.14 Aligned_cols=266 Identities=17% Similarity=0.291 Sum_probs=215.1
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
-.+.|++|.|+|.+ +.|++++.||++++||+........+. |..++.+++|.++ ..+++|+.||.|+.+|+.++
T Consensus 12 P~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~--- 85 (323)
T KOG1036|consen 12 PEDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG--- 85 (323)
T ss_pred ChhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCC---
Confidence 47889999999987 888888899999999999887666666 8999999999974 57899999999999999876
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
.......+...+.++.+.+....+++++ +.|++||.+.......+.. ...|.++.... +.|++|
T Consensus 86 ----------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g---~~LvVg 151 (323)
T KOG1036|consen 86 ----------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSG---NRLVVG 151 (323)
T ss_pred ----------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccC---CEEEEe
Confidence 4455667788899999998888888887 6799999998665555554 44888888763 678899
Q ss_pred ecCCeEEEEEccCCCCce---EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc---cccceeeeCcc-------
Q 012994 223 ASDRSITLYDLRMSSPAR---KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL---DEAKCVHMGHE------- 289 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~------- 289 (452)
+.|..+.+||+++..... .-.+.....++++.|++. -+++++-+|.+.+=..... ......+..|.
T Consensus 152 ~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred ecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 999999999999876554 334566788999999544 4788888888776554433 12222333332
Q ss_pred --cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC
Q 012994 290 --SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 290 --~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
.+|++|+|+|--..||||+.||.|.+||+.+.+.+..+... ...|.+++|+.||..||+++.
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 47999999999889999999999999999998888777665 367999999999999999874
No 85
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.97 E-value=2e-28 Score=205.66 Aligned_cols=294 Identities=19% Similarity=0.265 Sum_probs=228.6
Q ss_pred ccccccccccEEEEEeCCCCc-ceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCc
Q 012994 59 IGALDGHRDGISCMAKNPNYL-KGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCT 132 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~-~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 132 (452)
....+-|.+.|++++|+|... +++|+|+.-|+|-+||+.+. .-+..+..|.++|.+|.|+| +...+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 345567999999999999875 68899999999999999532 23566788999999999999 5568999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc-ceecccCCCceEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP-INSFQWGTDTVISV 209 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~-~~~~~~~~~~i~~~ 209 (452)
|++-|++.......... ......+..+.++.+...++.++ |...+||.+++.. ...+..|...|.++
T Consensus 259 iR~~D~~~~i~e~v~s~----------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv 328 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSL----------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSV 328 (498)
T ss_pred eeeeeecchhhHHHhhc----------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhccccee
Confidence 99999987643222111 12234566778888888777776 6789999998765 67778888999999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCC-----ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCC----Cccc
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSP-----ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSR----KLDE 280 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~~~ 280 (452)
+++|..+.+|++++.|++.+|||++.... +..+.+...+.++.|+|.+.. +++.+.|..|++||.. ....
T Consensus 329 ~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p 407 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEP 407 (498)
T ss_pred ecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCc
Confidence 99999999999999999999999986543 344556778899999999999 9999999999999984 2222
Q ss_pred cceeeeCcc--c--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEE-EEEcCCCCEEEE-eeCCC
Q 012994 281 AKCVHMGHE--S--AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC-VKFSCDASYVIS-GSDDT 354 (452)
Q Consensus 281 ~~~~~~~~~--~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s-~~~dg 354 (452)
...+...+. . ......|.|+.+++++|..-..|-|+|-..++.+..++......|.+ ..|+|-+..+++ ++..|
T Consensus 408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 222221111 1 23456899999999999999999999999998777776665445655 489998874544 55678
Q ss_pred cEEEeeccc
Q 012994 355 NLRLWKAKA 363 (452)
Q Consensus 355 ~i~iw~~~~ 363 (452)
.|+||.-+.
T Consensus 488 ki~vft~k~ 496 (498)
T KOG4328|consen 488 KIYVFTNKK 496 (498)
T ss_pred eEEEEecCC
Confidence 899886543
No 86
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.8e-29 Score=224.09 Aligned_cols=256 Identities=19% Similarity=0.326 Sum_probs=219.5
Q ss_pred EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (452)
.+...+..|..++|+|...+++++-..|.|++||.+-+.++.. ...+.+++..++|+|++.+++++|.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r------------FdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR------------FDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh------------hhccCCccceeeecCCCCeEEecCC
Confidence 3445667899999999999999999999999999987755444 3456788999999999999999996
Q ss_pred --eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCce
Q 012994 184 --QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMN 260 (452)
Q Consensus 184 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (452)
.|++|+..+.+++.++.+|-+.|..+.|++.- -.+++++.|.+|+||+..+.+++..+..+ ..+.+..|+|....
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDl- 149 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDL- 149 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccce-
Confidence 59999999999999999999999999999987 47889999999999999999999888754 55678889997664
Q ss_pred EEeecCCCeEEEEeCCCcc----------------------------ccceeeeCcccceEEEEEcCCCCEEEEEeCCCe
Q 012994 261 FTAANEDCNCYSYDSRKLD----------------------------EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT 312 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~ 312 (452)
+++++-|.+|++||+.... ....++.||...|+-++|+|.-.+|++|+.|..
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 8899999999999986421 123456799999999999999999999999999
Q ss_pred EEEEECCCCceeee-eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChh
Q 012994 313 IRIFQYNGGRSREI-YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 313 i~iwd~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 373 (452)
|++|.++..+.-.. .-.+|...|+++-|+|...++++.|.|++|+|||+...+.+++++..
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre 291 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE 291 (1202)
T ss_pred eeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc
Confidence 99999976543222 23456689999999999999999999999999999999998888543
No 87
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.6e-28 Score=202.12 Aligned_cols=285 Identities=13% Similarity=0.258 Sum_probs=229.6
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--ceEEEeecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~ 141 (452)
-.++|++|.|+|.. .+|++++.||+++||.+... ..++.+.--..+|.+.+|.|+|. .+++++....+..||+.+.
T Consensus 212 s~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCC-ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 35789999999997 99999999999999988643 45666666678999999999998 8999999999999999887
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
+.......... ....+..+..++++++++..| |-|.+....+++.+..++. .+.|..++|+.++ ..|
T Consensus 291 k~~k~~~~~g~---------e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSds-k~l 359 (514)
T KOG2055|consen 291 KVTKLKPPYGV---------EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDS-KEL 359 (514)
T ss_pred ccccccCCCCc---------ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCC-cEE
Confidence 65433221111 034566788899999999988 5799999999999988886 6889999999988 667
Q ss_pred EEEecCCeEEEEEccCCCCceEEEeeccc--ceEEEccCCCceEEeecCCCeEEEEeCCCc-----cccceeeeCcccce
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMNFTAANEDCNCYSYDSRKL-----DEAKCVHMGHESAV 292 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~v 292 (452)
++++.+|.|.+||++...+++.+...+.+ ++++.++++. ++++|+..|.+-+||..+. ..+......-...|
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 77777899999999999999998877765 4566667776 6999999999999996542 23333344556789
Q ss_pred EEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeec--cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 293 MDIDYSPTGREFVTGSY--DRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
+++.|+||+++||.+|. +..+++-.+.+......+. ....+.|+||+|||.+.+|+.|..+|.+.+|.+.
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999999999988774 6679998887765544442 2334679999999999999999999999999874
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.8e-29 Score=206.72 Aligned_cols=264 Identities=17% Similarity=0.284 Sum_probs=216.9
Q ss_pred chhhhhhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC
Q 012994 34 PQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (452)
+....++.......+++|++.... ++.+|.|-.++|+++.|.+++ .++++++.|+.+++|++...+...++.+|.+.
T Consensus 185 ~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 185 RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 333455566677889999998877 889999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
|+++.|......+++|+.|.+|++||+....+..+.... ..+..+..+ ...++++. +.|+.||
T Consensus 264 Vt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-------------S~cnDI~~~--~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 264 VTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG-------------SQCNDIVCS--ISDVISGHFDKKVRFWD 328 (459)
T ss_pred eeeehhhccccceeeccccchhhhhhhhhhheecccccc-------------ccccceEec--ceeeeecccccceEEEe
Confidence 999999987767999999999999999876554332221 122222222 22333432 5799999
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-----ecccceEEEccCCCceEEee
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-----RTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 264 (452)
.++..+......+ +.|+++..++++ ..+++++.|.++.+.|+++......+.. ....+.+.|+|++.+ +++|
T Consensus 329 ~Rs~~~~~sv~~g-g~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y-vaAG 405 (459)
T KOG0288|consen 329 IRSADKTRSVPLG-GRVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY-VAAG 405 (459)
T ss_pred ccCCceeeEeecC-cceeeEeeccCC-eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCce-eeec
Confidence 9999999998885 499999999988 6677889999999999999888777653 345678899998876 8999
Q ss_pred cCCCeEEEEeCCCccccceeeeCccc-ceEEEEEcCCCCEEEEEeCCCeEEEE
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHMGHES-AVMDIDYSPTGREFVTGSYDRTIRIF 316 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~dg~i~iw 316 (452)
+.||.+++|+..+.+........+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 406 S~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999887665555544544 79999999999999999999999999
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.3e-28 Score=201.37 Aligned_cols=253 Identities=21% Similarity=0.301 Sum_probs=214.8
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 129 (452)
+.+......+..|.||+..|+.+.|+|+. ..+++++.|..|+||.............|.++|+.+..+|.|.||++++.
T Consensus 245 ~~d~~s~q~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 245 LFDKPSNQILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred EEecchhhhhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecC
Confidence 44455566788999999999999999997 89999999999999999887777778899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe---cCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCC
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW---KNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTD 204 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~ 204 (452)
||+..+.|+.++.. +..... .-.+.+.+|+|||.+|+++. +.++|||+.++..+..|.+|.+
T Consensus 324 d~~w~Fsd~~~g~~-------------lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 324 DGTWAFSDISSGSQ-------------LTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred CceEEEEEccCCcE-------------EEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 99999999988743 222222 23578999999999999986 6799999999999999999999
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecc--cceEEEccCCCceEEeecCCCeEEEEeCCCc-ccc
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTK--SNSISWNPMEPMNFTAANEDCNCYSYDSRKL-DEA 281 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~ 281 (452)
+|..++|+.+| .+|+++++|+.|++||+|..+...++..... +.++.|.+.|.++. .++.+-.|++++..+. ...
T Consensus 391 ~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~-~~g~~l~Vy~~~k~~k~W~~ 468 (506)
T KOG0289|consen 391 PVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG-IAGSDLQVYICKKKTKSWTE 468 (506)
T ss_pred ceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE-eecceeEEEEEeccccccee
Confidence 99999999988 8999999999999999999998888877654 78899998888754 4477888888874332 223
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
...+..|.+..+++.|....+++++++.|..++++.+
T Consensus 469 ~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 469 IKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 3344467788999999999999999999999888764
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=216.02 Aligned_cols=321 Identities=17% Similarity=0.253 Sum_probs=247.9
Q ss_pred hhhHHHhhhh------hccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--ceEEEeecCCCCeeEE
Q 012994 44 ALTAAKLEKI------FARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGL 115 (452)
Q Consensus 44 ~~~~~~~~~~------~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l 115 (452)
....+++|++ ++.+++..++.|++.|+.++...++ +.|+++|.|-+|++|+...+ -++.++..|...|.|+
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 3444555555 3456788999999999999999998 89999999999999999877 4677788999999999
Q ss_pred EE-ccCCCeEEEEeCCCcEEEEeCCCCC--CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeC
Q 012994 116 TV-STDGRILVSCGTDCTVKLWNVPVAT--LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (452)
Q Consensus 116 ~~-~~~~~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (452)
++ -++...+|+||-|+.|.+||++++. ...++....... .......++++++..+.|.++++++ +.+++||.
T Consensus 124 a~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s---l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 124 AYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS---LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc---CCCCCccceeeeecCCcceEEEecCcccceEEecc
Confidence 99 7788899999999999999999883 333322211111 1115567899999999998888888 57999999
Q ss_pred CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeeccc-ceEEEccCCCceEEeecCCCe
Q 012994 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKS-NSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 269 (452)
++++.+..+++|.+.|.++..+++| ..+++++.||+|++||+...+++.++..+... -++..+|+ -..+.+|+.++.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s-f~~vYsG~rd~~ 278 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS-FTHVYSGGRDGN 278 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC-cceEEecCCCCc
Confidence 9999999999999999999999998 78889999999999999999999998765544 34444433 345889999999
Q ss_pred EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-------eee---------------
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-------EIY--------------- 327 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-------~~~--------------- 327 (452)
|+.-|+++......+. ....+|..+..+.+.+-+-+++.|+.|+-|...-...+ ...
T Consensus 279 i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 279 IYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred EEecccCCchhheEee-cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 9999999875544443 34567777777765555567778888998876421110 000
Q ss_pred -ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 328 -HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 328 -~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
..+...+|...+.-.|.++++|-..+|.+.+||+-.+..+..+.
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 00111245555666688999999999999999999998887775
No 91
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-28 Score=188.69 Aligned_cols=250 Identities=21% Similarity=0.295 Sum_probs=200.3
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC---ceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEEEE
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iw 136 (452)
-..|.+.|..+...--| ..|||++.|++|+|+...+. +++.++.+|.++|..++|.. .|.+||+++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 46799999999888888 99999999999999998764 46788999999999999965 89999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
.-..++. ........|...|++++|.|.+.
T Consensus 86 ke~~g~w--------------------------------------------------~k~~e~~~h~~SVNsV~waphey 115 (299)
T KOG1332|consen 86 KEENGRW--------------------------------------------------TKAYEHAAHSASVNSVAWAPHEY 115 (299)
T ss_pred ecCCCch--------------------------------------------------hhhhhhhhhcccceeeccccccc
Confidence 9866532 23445567899999999999753
Q ss_pred -cEEEEEecCCeEEEEEccCCC----CceEEEeecccceEEEccC---C----------CceEEeecCCCeEEEEeCCCc
Q 012994 217 -NVLATTASDRSITLYDLRMSS----PARKVIMRTKSNSISWNPM---E----------PMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 217 -~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~i~~~d~~~~ 278 (452)
-+|++++.||.|.+.+.+... ......+...+++++|.|. + ...|++|+.|..+.+|+....
T Consensus 116 gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~ 195 (299)
T KOG1332|consen 116 GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD 195 (299)
T ss_pred ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc
Confidence 467899999999999987762 1222335667789999886 2 145899999999999998764
Q ss_pred c-ccceeeeCcccceEEEEEcCCC----CEEEEEeCCCeEEEEECCCCce--eeeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 279 D-EAKCVHMGHESAVMDIDYSPTG----REFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 279 ~-~~~~~~~~~~~~v~~~~~s~~g----~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
. .....+.+|.+.|..++|.|.- .+||+++.||+|.||..+.... ...+.......+..+.||..|++|+.++
T Consensus 196 ~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 196 SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 2 3334477999999999999953 4799999999999998763211 1222222346799999999999999999
Q ss_pred CCCcEEEeecc
Q 012994 352 DDTNLRLWKAK 362 (452)
Q Consensus 352 ~dg~i~iw~~~ 362 (452)
.|+.+.+|.-.
T Consensus 276 GdNkvtlwke~ 286 (299)
T KOG1332|consen 276 GDNKVTLWKEN 286 (299)
T ss_pred CCcEEEEEEeC
Confidence 99999999754
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=207.20 Aligned_cols=266 Identities=15% Similarity=0.257 Sum_probs=216.4
Q ss_pred CCCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeE
Q 012994 109 QGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (452)
Q Consensus 109 ~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (452)
.+.|.+++|+|... -+|+.+. -.+.||+..+... ......+...+.+++|..||.++++++ |.|
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~------------~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V 92 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSV------------RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV 92 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhh------------hhhHHhhccceeEEEeecCCeEEEccCCcCcE
Confidence 46899999999443 3444443 4799999866532 223445677889999999999999998 679
Q ss_pred EEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEee
Q 012994 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (452)
++||+.+...+..+..|..++..+.|+|++..++++|++|+.+++||+.+......+. +...+.+.+|+|..+.++++|
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence 9999888778899999999999999999998999999999999999999887532332 456778999999999999999
Q ss_pred cCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
+.||.|++||++... .......|..+|..+.+-|.|..+++++. ..|++||+.+|.........|...|||+++..++
T Consensus 173 sYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred CCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence 999999999999876 33344489999999999999999999985 4699999997665555444466899999999999
Q ss_pred CEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 345 SYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 345 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
..|++|+-|+.+++||+.+.+.+..+ ...+.|.+++-.|....++
T Consensus 251 ~rLlS~sLD~~VKVfd~t~~Kvv~s~------------------~~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 251 TRLLSGSLDRHVKVFDTTNYKVVHSW------------------KYPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred ceEeecccccceEEEEccceEEEEee------------------ecccceeeEEecCCCceEE
Confidence 99999999999999999998887665 3455667777777544433
No 93
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2e-27 Score=198.39 Aligned_cols=280 Identities=18% Similarity=0.281 Sum_probs=237.2
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
...++++...|.. ..++||+.|..+.++|..+++.+..+.||...|+.+.|+|+...+++++.|-.|+||.....
T Consensus 219 ~pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---- 293 (506)
T KOG0289|consen 219 TPGITALDIIPSS-SKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---- 293 (506)
T ss_pred CCCeeEEeecCCC-CcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc----
Confidence 3578999999985 88999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC--CCceEEEEECCCCCcEEEE
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG--TDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~ 221 (452)
..+.....+..+++.+..+|.|.++++++ +.....|+.++..+...... .-.+++.+|+|+| .+|.+
T Consensus 294 --------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgt 364 (506)
T KOG0289|consen 294 --------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGT 364 (506)
T ss_pred --------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEec
Confidence 45666777888999999999999999987 46888999999887766542 3458999999999 89999
Q ss_pred EecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC
Q 012994 222 TASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (452)
|..||.|++||+.+......+.. .+++..+.|+.+| +.++++++|+.+.+||+|+......+.......+.+++|.+.
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence 99999999999999887777764 4667888888766 558888899999999999998777776666668999999999
Q ss_pred CCEEEEEeCCCeEEEEECCCCc--eeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 301 GREFVTGSYDRTIRIFQYNGGR--SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
|.+|+.++.|=.|++++-.+.. ....+ ..|.+..+++.|..+.+++++++.|..++++.+
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~-~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKEL-ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehh-hhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999888777777644433 33333 233367899999999999999999999888754
No 94
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=9.3e-28 Score=197.05 Aligned_cols=266 Identities=20% Similarity=0.335 Sum_probs=211.3
Q ss_pred HhhhhhccccccccccccccEEEEEeCCCC--cceEEEeeCCCcEEEEeCCCCceE----EEeecCCCCeeEEEEccCCC
Q 012994 49 KLEKIFARPFIGALDGHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIANRRTV----CQYSGHQGAVRGLTVSTDGR 122 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~~l~tg~~dg~i~iwd~~~~~~~----~~~~~h~~~v~~l~~~~~~~ 122 (452)
++|+. .+....++.||+++|.+++|.-.+ ...|++++.|.++++|.++.++.. ..-.||...|-++...++|.
T Consensus 128 riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt 206 (423)
T KOG0313|consen 128 RIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT 206 (423)
T ss_pred EEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC
Confidence 34543 467778899999999988875443 135999999999999999877542 33459999999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCC--CC-----------CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEE
Q 012994 123 ILVSCGTDCTVKLWNVPVATLT--DS-----------DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (452)
.+++|+.|.+|+||+....... .. ............+..+..+|.++.|++.+ .+.+++ .+|+.
T Consensus 207 r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~-v~yS~SwDHTIk~ 285 (423)
T KOG0313|consen 207 RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT-VIYSVSWDHTIKV 285 (423)
T ss_pred eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC-ceEeecccceEEE
Confidence 9999999999999994322111 00 01111122334555677899999999844 444443 68999
Q ss_pred EeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce---EE-EeecccceEEEccCCCceEEe
Q 012994 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---KV-IMRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 263 (452)
||+.++.....+.. ...++++..+|.. ++|++|+.|..+++||.+++.-.. .+ .+..-+..+.|+|...+.|++
T Consensus 286 WDletg~~~~~~~~-~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 286 WDLETGGLKSTLTT-NKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred EEeecccceeeeec-CcceeEeeccccc-ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 99999999888876 6789999999977 899999999999999999875321 22 234567899999999999999
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
++.|+.+.+||.|....+.....+|...|.++.|+ ++.+|++|+.|.+|+|+.-.
T Consensus 364 ~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999999999998888888999999999998 56799999999999998754
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=203.68 Aligned_cols=287 Identities=16% Similarity=0.204 Sum_probs=223.2
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC-CC------CCCCCCCeeEEEecCCeeeeeecCC
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD-DS------TDNSSEPLAVYVWKNSFWAVDHQWE 174 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (452)
...+..|.-+|.+++++|++++.++++.||+|.-|++.++...... .. +........ ..+...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 5566789999999999999999999999999999999988754211 11 111112221 266778899999999
Q ss_pred CCeEEEeCC--eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceE
Q 012994 175 GDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSI 251 (452)
Q Consensus 175 ~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~ 251 (452)
|.++++++. .+.||+.++.+.++.+.+|.+.|.+++|-... +.+++++.|+.|++|++.....+.++.. +..+..+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 999999984 48899999999999999999999999998644 7889999999999999987776655543 3333444
Q ss_pred EEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC
Q 012994 252 SWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331 (452)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 331 (452)
..... ...+.+|+.|.++++|++ ......++.++.+.+-|++|-.+ ..+++|+.||.|.+|++...+++.+....|
T Consensus 293 daL~r-eR~vtVGgrDrT~rlwKi--~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 293 DALSR-ERCVTVGGRDRTVRLWKI--PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred chhcc-cceEEeccccceeEEEec--cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccc
Confidence 43333 344777889999999999 45556677789999999999855 679999999999999999988887764443
Q ss_pred c-----------CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc-cccCChhhhhhhHHHHHHHHhhccCcccccccc
Q 012994 332 M-----------QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ-LGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVR 399 (452)
Q Consensus 332 ~-----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (452)
. .+|++++..|...++++|+.+|.|++|.+.++-. +..+. -+...+-|++++|
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~---------------~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY---------------SLSLVGFVNSLAF 433 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee---------------ecccccEEEEEEE
Confidence 1 2899999999999999999999999999988722 22111 1234677888888
Q ss_pred CCCCChhhHH
Q 012994 400 HRHLPKPIYK 409 (452)
Q Consensus 400 ~~~~p~~~~~ 409 (452)
.++-..++..
T Consensus 434 ~~sgk~ivag 443 (479)
T KOG0299|consen 434 SNSGKRIVAG 443 (479)
T ss_pred ccCCCEEEEe
Confidence 7776655544
No 96
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-28 Score=205.78 Aligned_cols=234 Identities=18% Similarity=0.285 Sum_probs=199.2
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
-.++|.|++-+|.| .+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|+|||.||.|.+|++..--
T Consensus 80 ~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv-- 156 (476)
T KOG0646|consen 80 LPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV-- 156 (476)
T ss_pred cccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec--
Confidence 46789999999998 899989899999999999999999999999999999999999999999999999999984220
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC-CcEEEEEe
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE-PNVLATTA 223 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~ 223 (452)
+++. -.+-+++..+..|.-+|+++...+.+ ...+++++
T Consensus 157 ---------------------------~a~~--------------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS 195 (476)
T KOG0646|consen 157 ---------------------------SADN--------------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS 195 (476)
T ss_pred ---------------------------cccc--------------CCCccceeeeccCcceeEEEEecCCCccceEEEec
Confidence 0000 01345778888899999999988763 34789999
Q ss_pred cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc---------------ccceeeeCc
Q 012994 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD---------------EAKCVHMGH 288 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------------~~~~~~~~~ 288 (452)
.|.++++||+..+..+.++..+..+.+++..|.+.. +.+|+.+|.|++.++.+.. .....+.+|
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~-~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERV-VYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred CCceEEEEEeccceeeEEEecCCcceeEEEcccccE-EEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 999999999999999999999999999999998765 7889999999998876543 122345588
Q ss_pred cc--ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 289 ES--AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 289 ~~--~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
.+ .|+|++++-||.+|++|+.||.|+|||+.+.+++...... .++|+.+.+.|-.
T Consensus 275 ~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~-kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS-KGPVTNLQINPLE 331 (476)
T ss_pred cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh-ccccceeEeeccc
Confidence 88 9999999999999999999999999999999988887643 3889999996643
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=2.7e-28 Score=207.34 Aligned_cols=280 Identities=19% Similarity=0.337 Sum_probs=233.5
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC---ceEEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
.|..-|.+++++... ++++||+ .|.|+|||+... .++..+. .....|.++..+|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~t-rhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCCc-ceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 588899999999887 9999998 578999998643 2333332 24567999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
......... .........++++.+||.++..++ +|.|.|||+.....++.|++|.+.+.||.++++|
T Consensus 495 AapTprika----------eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dG- 563 (705)
T KOG0639|consen 495 AAPTPRIKA----------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDG- 563 (705)
T ss_pred cCCCcchhh----------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCC-
Confidence 766432111 111223456778899999876654 4889999999999999999999999999999998
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
..|.+|+-|++|+.||++.+..+....+..++.++.++|.+.. +++|-.++.+.+.......+. .+.-|.+.|.++.
T Consensus 564 tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dW-lavGMens~vevlh~skp~ky--qlhlheScVLSlK 640 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDW-LAVGMENSNVEVLHTSKPEKY--QLHLHESCVLSLK 640 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccc-eeeecccCcEEEEecCCccce--eecccccEEEEEE
Confidence 6788999999999999999999999999999999999999987 778888888888877665433 3446889999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
|.+.|+++++.+.|+.+..|...-|..+.. ......|.++..|.|.+||+||+.|....||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGasiFq--skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCccccceee--ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999999999999988876544 444578999999999999999999988888865
No 98
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=217.87 Aligned_cols=270 Identities=21% Similarity=0.273 Sum_probs=218.6
Q ss_pred HHHhhhhhccccccc-cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE
Q 012994 47 AAKLEKIFARPFIGA-LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV 125 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~ 125 (452)
...+|+...+.++.. +.||.+.|.+++|..-+ .+|++|+.|.++++||..+|++...+.+|.+.|.++...+ .+++
T Consensus 229 tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~ 305 (537)
T KOG0274|consen 229 TLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLV 305 (537)
T ss_pred eeEEeecccceEEEeeccCCCCCceeEEEecCC-CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEe
Confidence 346888888888888 99999999999998754 8999999999999999999999999999999999998764 4788
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (452)
+|+.|.+|++|+++++. .+.... +...|.++... +.++++++ +.|.+||+.+++++..+.+|
T Consensus 306 sgs~D~tVkVW~v~n~~-------------~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH 370 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGA-------------CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH 370 (537)
T ss_pred eccCCceEEEEeccCcc-------------eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC
Confidence 89999999999998763 334444 77788888887 56666654 78999999999999999999
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
...|.++.+.+. ..+++|+.|++|++||+++. +++..+..+.... .-..-....+++++.|+.|++||....+..
T Consensus 371 ~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~ 446 (537)
T KOG0274|consen 371 TGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV--SSLLLRDNFLVSSSADGTIKLWDAEEGECL 446 (537)
T ss_pred cceEEEEEecCc--ceEEeeeeccceEeecCCchhhhhhhhcCCcccc--cccccccceeEeccccccEEEeecccCcee
Confidence 999999988764 67899999999999999999 7777776554443 111112346889999999999999887766
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
......|...|..+++. ...+++++.||.+++||++++................+++
T Consensus 447 ~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 447 RTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred eeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 55554477889988876 4578889999999999999998877663333233444444
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=4.6e-26 Score=201.50 Aligned_cols=274 Identities=13% Similarity=0.168 Sum_probs=205.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|.+||+.+++.....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~----------- 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL----------- 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-----------
Confidence 678999999999999999999888887654 46789999999876 56678899999999876443221
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC-eEEEEEcc
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLR 234 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~ 234 (452)
........+.+++++..+++.+ +.+.+||+.+.+.+..+.. ...+.+++|+|++ .++++++.++ .+.+||..
T Consensus 70 --~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~ 145 (300)
T TIGR03866 70 --PSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTK 145 (300)
T ss_pred --cCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCC
Confidence 1122245678899998765542 5799999998877766653 2346789999988 6777777664 56778988
Q ss_pred CCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC----c--ccceEEEEEcCCCCEEEE-E
Q 012994 235 MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG----H--ESAVMDIDYSPTGREFVT-G 307 (452)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~--~~~v~~~~~s~~g~~l~s-~ 307 (452)
+...............+.|+|++..+++++..++.+++||..+.......... + ......++|+|+|+++++ .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~ 225 (300)
T TIGR03866 146 TYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL 225 (300)
T ss_pred CCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc
Confidence 77666555555566789999999887777778999999999876543322110 1 112356889999998554 4
Q ss_pred eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe-eCCCcEEEeecccccccccCC
Q 012994 308 SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG-SDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 308 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+.++.+.+||+.+++.......+ ..+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..+.
T Consensus 226 ~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 226 GPANRVAVVDAKTYEVLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCCeEEEEECCCCcEEEEEEeC--CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 55678999999988776554333 468999999999999876 468999999999999877664
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=209.91 Aligned_cols=275 Identities=15% Similarity=0.249 Sum_probs=222.7
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
.+|+++-+.++|.|+| .+|++++.||.|++|+..+. +....+..+...|.+++.. +.+|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCC
Confidence 4799999999999999 89999999999999997766 3334444477888888764 558999999999999999887
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe--EEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
. .........-++..++++.+|.+++.++.+ |++.++.+......+.+|.++|.++.++|++ ++|
T Consensus 87 ~------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~-~fL 153 (933)
T KOG1274|consen 87 E------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG-NFL 153 (933)
T ss_pred C------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCC-CEE
Confidence 3 333455666788899999999999999864 9999999999999999999999999999998 899
Q ss_pred EEEecCCeEEEEEccCCCCceEEEe---------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc-
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIM---------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE- 289 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~- 289 (452)
|+.+.||.|++||+.++.....+.. ......++|+|++.. +++...++.|.+|+.............+.
T Consensus 154 Avss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~-la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s 232 (933)
T KOG1274|consen 154 AVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT-LAVPPVDNTVKVYSRKGWELQFKLRDKLSS 232 (933)
T ss_pred EEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe-EEeeccCCeEEEEccCCceeheeecccccc
Confidence 9999999999999998776655432 233467899999887 56667788999999988877665554443
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
..+.++.|+|+|.|||+++.||.|.|||.++... ......|++++|.|+..-+-.-...|...+|
T Consensus 233 s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 233 SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 3499999999999999999999999999998222 2223679999999988766554444544444
No 101
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.5e-27 Score=204.68 Aligned_cols=305 Identities=20% Similarity=0.245 Sum_probs=232.9
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCC--eEEEE
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR--ILVSC 127 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~l~s~ 127 (452)
--+.|+..+...+.||++.|.|+...|.| .+|++|+.||+|+||.+.+|.++..+. -.+.|.||+|+|.+. .||++
T Consensus 384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 384 DLRPFPTRCALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred hcCCCcceeeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 33445555666779999999999999998 999999999999999999999999887 567899999999655 34444
Q ss_pred eCCCcEEEEeCCCCCCCCC------CCCC----C---------------CCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 128 GTDCTVKLWNVPVATLTDS------DDST----D---------------NSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~------~~~~----~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
.+..+.|-+..-|..+.. +... . ..........+...+..+.|+..|.++++..
T Consensus 462 -~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 -VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred -ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 444566666544411110 0000 0 0011234556778899999999999999875
Q ss_pred C-----eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccC
Q 012994 183 A-----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPM 256 (452)
Q Consensus 183 ~-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (452)
. .|.|+++........|....+.|.++.|+|..+.++ +++ ...|+|||+.....+..+... .-+..++.+|.
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEE-EEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 3 599999998888888877788999999999885444 444 467999999887666665543 34578889998
Q ss_pred CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC------CCcee---eee
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN------GGRSR---EIY 327 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~------~~~~~---~~~ 327 (452)
|.. +++++.++.+..||+.-...+...+..|...+++++|++.-.++++|+.||++.||--. ....+ ..+
T Consensus 619 GDn-li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 619 GDN-LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred CCe-EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 887 77888999999999998888888888999999999999999999999999999998532 11111 122
Q ss_pred ccC---CcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 328 HTK---RMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 328 ~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
.++ ....|..+.|+|...+|++++.||+|++|.
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 221 124588999999999999999999999983
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.6e-26 Score=184.17 Aligned_cols=288 Identities=15% Similarity=0.207 Sum_probs=217.0
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
..|+.|++.| .+||+|+.||.|.|||+.+...-..+.+|..+|++++||++|+.|+|+|.|..|.+||+..+
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g------- 97 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG------- 97 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC-------
Confidence 7899999999 99999999999999999999988889999999999999999999999999999999999877
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCC--cceeccc-C-CCceEEEEECCCCCcEEEE
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQ--PINSFQW-G-TDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~--~~~~~~~-~-~~~i~~~~~~~~~~~~l~~ 221 (452)
.+.....+..+++...|+|.....+.+. ..-.+.++..++ .+..-.. . +....+..|.+.| +++++
T Consensus 98 ------s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g-~yIit 170 (405)
T KOG1273|consen 98 ------SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG-KYIIT 170 (405)
T ss_pred ------CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC-CEEEE
Confidence 4667778888999999998654333332 223333333211 1110000 0 1112223567766 79999
Q ss_pred EecCCeEEEEEccCCCCceEEEeec--ccceEEEccCCCceEEeecCCCeEEEEeCCCccccc---eeee-------Ccc
Q 012994 222 TASDRSITLYDLRMSSPARKVIMRT--KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK---CVHM-------GHE 289 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~-------~~~ 289 (452)
|...|.+.++|..+.+++..+.... .+..+.++..+.. ++..+.|..|+.|+.+.....- .... -..
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999999999999998887776543 5566777666654 8888999999999987432220 0000 112
Q ss_pred cceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 290 SAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
..-.+++||.+|.|++.|+. ...++||.-..|.++..+++........+.|+|-...+++- ..|.++||....-..-.
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchh
Confidence 23457899999999988774 45699999999999999988877788999999988888877 67899999987655554
Q ss_pred cCChh
Q 012994 369 VLHPR 373 (452)
Q Consensus 369 ~~~~~ 373 (452)
.|.|.
T Consensus 329 afAPd 333 (405)
T KOG1273|consen 329 AFAPD 333 (405)
T ss_pred hcCch
Confidence 45443
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2.1e-26 Score=183.11 Aligned_cols=221 Identities=20% Similarity=0.312 Sum_probs=173.9
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----------eEEE-----eecCCCCeeEEEEcc-CCCe
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----------TVCQ-----YSGHQGAVRGLTVST-DGRI 123 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----------~~~~-----~~~h~~~v~~l~~~~-~~~~ 123 (452)
...+.|.+.|+++...+...+++++|+.||.|.+||++... .++. -.+|.-.|.++.|-| |...
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 34467999999999999866999999999999999997542 1111 136888999999999 6668
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC---eEEEeC--CeEEEEeCCCCCccee
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFATAG--AQVDIWNHNRSQPINS 198 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~i~i~d~~~~~~~~~ 198 (452)
+.+++.|.++++||.++. .....+..+..++.-+++|-.. +++++. -+|++.|+.+|.....
T Consensus 117 FtssSFDhtlKVWDtnTl-------------Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~ 183 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTL-------------QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT 183 (397)
T ss_pred eecccccceEEEeecccc-------------eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee
Confidence 889999999999999775 3344455566677767776432 455554 3699999999999999
Q ss_pred cccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 199 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
+.+|.+.|.++.|+|....+|++|+.||.|++||++... |.+++.|..+.
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras------------------------------gcf~~lD~hn~ 233 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS------------------------------GCFRVLDQHNT 233 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc------------------------------ceeEEeecccC
Confidence 999999999999999998899999999999999998652 12222232221
Q ss_pred c--ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 279 D--EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 279 ~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
. +.......|.+.|..++|+.+|.++++++.|..+++|+..+|+.
T Consensus 234 k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 234 KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 1 11223458999999999999999999999999999999988764
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-26 Score=182.86 Aligned_cols=295 Identities=14% Similarity=0.212 Sum_probs=209.5
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-----EEEeecCCCCeeEEEEccCCCeE-EEEeCCCc
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCT 132 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~ 132 (452)
+..|+||.+.|++++|+.|| ++|+|++.|++|++|++..... ++.- -.-+--+.+.|.||.+-+ +++-...+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCE
Confidence 45789999999999999999 9999999999999999876432 1110 011245778999987754 44555668
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCe-eEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
+++|.+...+-. ....+....... ....+.-.+..+....++.++++++ .+|.+|++. |+.+..+......-+..
T Consensus 157 l~vyk~~K~~dG-~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a 234 (420)
T KOG2096|consen 157 LCVYKLVKKTDG-SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA 234 (420)
T ss_pred EEEEEeeecccC-CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence 999987543221 000000000000 0111223444566677888888876 469999999 88898888877788889
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCC------CceEEE---eecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSS------PARKVI---MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD- 279 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~- 279 (452)
+.+|+| +++++++----|++|.+--.+ ..+.+. +...+..++|+++... +++.+.||..++||+.-..
T Consensus 235 avSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r-~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 235 AVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR-AVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce-eEEEecCCcEEEeeccceEe
Confidence 999999 789998888889999863221 222233 3445677888887765 8899999999999976321
Q ss_pred ---ccce------eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 280 ---EAKC------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 280 ---~~~~------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.+.. .+....+....++++|.|+.||.+. ...+++|..++|+....+...|...|++++|+++|++++++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc 391 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC 391 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee
Confidence 1111 1112223344899999999988765 45799999999999988888888999999999999999998
Q ss_pred eCCCcEEEeec
Q 012994 351 SDDTNLRLWKA 361 (452)
Q Consensus 351 ~~dg~i~iw~~ 361 (452)
| |..++++.-
T Consensus 392 G-dr~vrv~~n 401 (420)
T KOG2096|consen 392 G-DRYVRVIRN 401 (420)
T ss_pred c-ceeeeeecC
Confidence 7 567888763
No 105
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-25 Score=202.32 Aligned_cols=290 Identities=17% Similarity=0.270 Sum_probs=223.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.+.|+++.--+...+.++.|+.+|.+.+|++.+++.+++++++...|+++.-+|-=..++.|..+|+|.++++..+
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---- 234 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD---- 234 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC----
Confidence 3348888766666677999999999999999999999999999999999999998789999999999999999877
Q ss_pred CCCCCCCCCCCeeEEEec-CCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecc-cCCCceEEEEECCCCCcEEE
Q 012994 146 SDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~ 220 (452)
+.+..+... +.|+.++|..||..+.+.+ |.+.+||++..+.+..+. .|.+.|..+.|.|.. .+++
T Consensus 235 ---------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ 304 (910)
T KOG1539|consen 235 ---------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLV 304 (910)
T ss_pred ---------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEe
Confidence 344445554 8999999999998666654 679999999988877666 577888888888866 5888
Q ss_pred EEecCCeEEEEEccCCCC-----------------ceE------------------------------------------
Q 012994 221 TTASDRSITLYDLRMSSP-----------------ARK------------------------------------------ 241 (452)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~-----------------~~~------------------------------------------ 241 (452)
+++.|+.+++|=..++.- ++-
T Consensus 305 ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk 384 (910)
T KOG1539|consen 305 TAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK 384 (910)
T ss_pred eccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence 888888887773321100 000
Q ss_pred ------------------------------------------------------EEee------cccceEEEccCCCceE
Q 012994 242 ------------------------------------------------------VIMR------TKSNSISWNPMEPMNF 261 (452)
Q Consensus 242 ------------------------------------------------------~~~~------~~~~~~~~~~~~~~~~ 261 (452)
+... ....+++.++-| .+.
T Consensus 385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG-NF~ 463 (910)
T KOG1539|consen 385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG-NFV 463 (910)
T ss_pred ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC-ceE
Confidence 0000 111223333333 336
Q ss_pred EeecCCCeEEEEeCCCcccccee--eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee------------
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCV--HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY------------ 327 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~------------ 327 (452)
+.|...|.|-+|+++..-..... ...|..+|++++...-++.+++++.+|.+++||.........+
T Consensus 464 ~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h 543 (910)
T KOG1539|consen 464 FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYH 543 (910)
T ss_pred EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeee
Confidence 66788899999998876544443 2579999999999998999999999999999998754422111
Q ss_pred ----------------------------ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 328 ----------------------------HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 328 ----------------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
..+|...|++++|||||++|++++.|++|++||+.++.++-.+
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 1236678999999999999999999999999999999998655
No 106
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.2e-27 Score=212.66 Aligned_cols=263 Identities=16% Similarity=0.273 Sum_probs=188.3
Q ss_pred EEEee-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC---CCCe
Q 012994 102 VCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW---EGDL 177 (452)
Q Consensus 102 ~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 177 (452)
.+.+. +|.+.|+++.|++||+|||+||.||.|+||.+.............. ...........+..+..+. .+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~--~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSS--CMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccc--hhhhhhhhccccCccccccccccccc
Confidence 34455 8999999999999999999999999999999865322110000000 0000000000000000000 0000
Q ss_pred EEEeC----CeEEEEeC----CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccc
Q 012994 178 FATAG----AQVDIWNH----NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSN 249 (452)
Q Consensus 178 ~~~~~----~~i~i~d~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (452)
..... .. .+.+. -..+++..+.+|.+.|.++.|+.+ ++|++++.|.+|++|++....++..+.+..-++
T Consensus 337 s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT 413 (712)
T KOG0283|consen 337 SSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT 413 (712)
T ss_pred cccccccCCcc-ccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeE
Confidence 00000 01 11111 135688999999999999999975 589999999999999999999999999999999
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 329 (452)
+++|+|.+..+|++|+-|+.+++|++...... ....-...|++++|+|||++.+.|+.+|..++|++...+.....+.
T Consensus 414 cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv--~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 414 CVAFNPVDDRYFISGSLDGKVRLWSISDKKVV--DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEecccCCCcEeecccccceEEeecCcCeeE--eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999999999999999999999999764432 2233447899999999999999999999999999998776554421
Q ss_pred C-------CcCcEEEEEEcCC-CCEEEEeeCCCcEEEeecccccccccCC
Q 012994 330 K-------RMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 330 ~-------~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
. ....|+++.|.|. ...|++.+.|..|+|+|..+-+++..|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 1 1237999999984 3356677889999999998777776664
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=209.65 Aligned_cols=247 Identities=21% Similarity=0.348 Sum_probs=204.1
Q ss_pred ccccEE---EEEeCCCCcceEEEeeCCCcEEEEeCCCCc------eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 65 HRDGIS---CMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 65 h~~~V~---~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
|...|. .+..+..+.++|+|||.||.|++|+..... .+..++.|...|+.+....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 555566 566666655889999999999999976432 36678899999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
|+...+. .-++..+..|.+.|.|+++-...
T Consensus 100 W~~~~~~--------------------------------------------------~~c~stir~H~DYVkcla~~ak~ 129 (735)
T KOG0308|consen 100 WNAHKDN--------------------------------------------------TFCMSTIRTHKDYVKCLAYIAKN 129 (735)
T ss_pred eecccCc--------------------------------------------------chhHhhhhcccchheeeeecccC
Confidence 9986441 12356677899999999993334
Q ss_pred CcEEEEEecCCeEEEEEccCCCC--ceEEE----------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 216 PNVLATTASDRSITLYDLRMSSP--ARKVI----------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
..++++||-|+.|.+||++++.. +..+. ....+.+++.++.+ .+++.|+..+.+++||.++..+...
T Consensus 130 ~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 130 NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEeccccccceee
Confidence 47999999999999999997632 22211 12344567777766 6789999999999999999887776
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.. ||...|..+..++||..+++++.||+|++||+...+++.++..+. ..|+++..+|+=..+++|+.||.|..=|+.+
T Consensus 209 Lr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~-e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 209 LR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK-EGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc-CceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 66 999999999999999999999999999999999999999886665 5699999999999999999999999988887
Q ss_pred c
Q 012994 364 S 364 (452)
Q Consensus 364 ~ 364 (452)
.
T Consensus 287 ~ 287 (735)
T KOG0308|consen 287 P 287 (735)
T ss_pred c
Confidence 4
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=2.2e-27 Score=189.99 Aligned_cols=252 Identities=19% Similarity=0.284 Sum_probs=211.5
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe--ecCCCCeeEEEEccCCCeEEEEeCCCcE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY--SGHQGAVRGLTVSTDGRILVSCGTDCTV 133 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~l~s~~~dg~v 133 (452)
.|.+++|-.|.+.|+++.|+|.. ..|++|+.|++|+++|+......+.+ -....+|.++.|+|.|.+|+.|..-.++
T Consensus 162 hPvIRTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred CceEeehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce
Confidence 37899999999999999999998 99999999999999999765332222 1245689999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc-CC-CceEEE
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW-GT-DTVISV 209 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~-~~i~~~ 209 (452)
++||+++.++..... -...+...++++.+++.+.+.++++ |.|++||--+++++.++.. |. ..|.+.
T Consensus 241 rlYdv~T~Qcfvsan---------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSAN---------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred eEEeccceeEeeecC---------cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 999998876533221 1223567889999999999999997 6799999999999988854 43 468888
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec------ccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT------KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.|..++ .++++.+.|..+++|.+.+++.+..+...+ ..+...|+....+++.--...+.+..||.++......
T Consensus 312 ~Ftkn~-kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 312 VFTKNG-KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEccCC-eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 898877 799999999999999999999988876432 2245667777777777777788999999999988888
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
...+|++.+..+.-||.+.-+++|+.|-.+++|--
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 88899999999999999999999999999999964
No 109
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-26 Score=183.61 Aligned_cols=251 Identities=15% Similarity=0.216 Sum_probs=196.6
Q ss_pred cCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C
Q 012994 107 GHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 107 ~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
.....|.+|+||| ...+++.+|.||+|++|+++.... ..+.....+.+++.+++|+.+|..+++++ +
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~----------~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ----------LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc----------ccchhhhccCCCeEEEEEccCCceEEeeccCC
Confidence 4567899999999 555666899999999999976311 23345556788999999999999888776 6
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCC-cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEE
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP-NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (452)
.+++||+.++ .+..+..|.++|.++.|-+... ..|++|+.|.+|+.||++...++..+.++..+.++..- .-+++
T Consensus 95 ~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---~pm~v 170 (347)
T KOG0647|consen 95 QAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVL---YPMAV 170 (347)
T ss_pred ceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhcc---CceeE
Confidence 8999999999 4667778999999999987542 37899999999999999999999998887776655432 23578
Q ss_pred eecCCCeEEEEeCCCcccc-ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeeeccCC--------
Q 012994 263 AANEDCNCYSYDSRKLDEA-KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKR-------- 331 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~-------- 331 (452)
++..+..|.+|++++.... ......-.-.+.+++..+|....+.|+-+|.+-|..+..+.. -..+..+.
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 8889999999999765332 223333344688999999888889999999999999987632 22332222
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.-.|++++|+|....|+|+|.||++.+||-.....+....
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~ 290 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE 290 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccC
Confidence 2358899999999999999999999999988766665544
No 110
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.8e-26 Score=201.18 Aligned_cols=323 Identities=14% Similarity=0.208 Sum_probs=240.4
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE---EEeecCCCCeeEEEEcc-C----------CCeEEEEeCCCcE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV---CQYSGHQGAVRGLTVST-D----------GRILVSCGTDCTV 133 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~-~----------~~~l~s~~~dg~v 133 (452)
...++.|++.. ..|.....|..++|||+..-..+ ..+--|...|+++.--| + ...++||+.|++|
T Consensus 326 D~IA~~Fdet~-~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 326 DAIACQFDETT-DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ceeEEEecCCC-ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 45578899987 88888999999999999865432 33445888998887655 1 2368999999999
Q ss_pred EEEeCCCCCCCCCCC----------C---------------CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEE
Q 012994 134 KLWNVPVATLTDSDD----------S---------------TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 186 (452)
++||+..+..-..+. . ................+.+++.+|+|+.+++++ |.++
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 999997632211100 0 000011223334456889999999999999998 7899
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCC--CCcEEEEEecCCeEEEEEccCC-CCceEEEe-ecccceEEEccCC-CceE
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPA--EPNVLATTASDRSITLYDLRMS-SPARKVIM-RTKSNSISWNPME-PMNF 261 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~~ 261 (452)
+|++........+..|...|.|+.++.- +..+|++++.|.-|.+||+... ...+++.. ...++++.|...+ ...+
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 9999999999999999999999999852 3368999999999999998654 34444443 5667888887766 3456
Q ss_pred EeecCCCeEEEEeCCCccccceeeeC----cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC--cCcE
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMG----HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--MQRV 335 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v 335 (452)
++++.|..+++--.++.........+ ....+++++..|..+++++++.|..|+|||+++++....+...+ .+..
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 77777776665444432222222211 23468999999999999999999999999999999998885544 4678
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhH
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIY 408 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 408 (452)
..+...|.|-||++.+.|.++.++|+.+|++++.+. +|...|+++.|.++=..+|.
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-----------------GHsE~VTG~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-----------------GHSEAVTGVKFLNDCKHLIS 700 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-----------------Ccchheeeeeecccchhhee
Confidence 889999999999999999999999999999987765 55555555555555444443
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-26 Score=183.29 Aligned_cols=276 Identities=17% Similarity=0.267 Sum_probs=218.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeC--CCcEEEEeCCCCceEEEeecC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSM--DGDIRLWDIANRRTVCQYSGH 108 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h 108 (452)
++++.+..+.........++.+...+..++++..+.-+|..+.|.... +.++.++. |.+|+.-++.+.+.++.+.||
T Consensus 21 ~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryLsl~dNkylRYF~GH 99 (311)
T KOG1446|consen 21 DFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYLSLHDNKYLRYFPGH 99 (311)
T ss_pred EecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEEEeecCceEEEcCCC
Confidence 455566666555556678889999999999999999999999997775 66666666 889999999999999999999
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~ 186 (452)
...|++|+.+|-+..+++++.|++|++||++..++.... ....-...++.|+|.++|.+.+ .|+
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--------------~~~~~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--------------NLSGRPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--------------ecCCCcceeECCCCcEEEEecCCCeEE
Confidence 999999999998899999999999999999866442221 1223345789999999999875 599
Q ss_pred EEeCCCC--CcceecccC---CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceE
Q 012994 187 IWNHNRS--QPINSFQWG---TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 187 i~d~~~~--~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
+||++.- .+...+... ....+.+.|+|+| ..++.+...+.+.+.|.-.+.....+....
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~--------------- 229 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGTVKSTFSGYP--------------- 229 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCcEeeeEeecc---------------
Confidence 9999864 345554433 5678999999999 577777888999999988777555443211
Q ss_pred EeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEc
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 341 (452)
....--...+|+|||+++++|+.||+|.+|+++++..+..+...+.+++.++.|+
T Consensus 230 -------------------------~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn 284 (311)
T KOG1446|consen 230 -------------------------NAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN 284 (311)
T ss_pred -------------------------CCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC
Confidence 0111124678999999999999999999999999999999888777999999999
Q ss_pred CCCCEEEEeeCCCcEEEeecccc
Q 012994 342 CDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 342 ~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
|.-.++++++ ..+.+|=....
T Consensus 285 P~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 285 PRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred CceeeeeecC--ceEEEEecccc
Confidence 9877777664 57888866543
No 112
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=7.7e-27 Score=188.05 Aligned_cols=277 Identities=14% Similarity=0.234 Sum_probs=226.6
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--Ce
Q 012994 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQ 184 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 184 (452)
+..+-+-|..|+|||++|++|+.||.|.+||..+|++...+.... .-........+.++.|+.|..+++++. |.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----qd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----QDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh----hcceeecccceEEEeecccHHHhhccCcCCc
Confidence 345668899999999999999999999999999998765544322 223445678899999999999999997 78
Q ss_pred EEEEeCCCCCcceecc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEE
Q 012994 185 VDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFT 262 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (452)
|++|.+.+|.+++.|. .|...|+|+.|+.++ ..+++++.|.++++.-+.+++.+..+..+ ..++...|.++|.. ++
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~-ii 364 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH-II 364 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe-EE
Confidence 9999999999999997 799999999999988 67789999999999999999999888754 45677888888776 78
Q ss_pred eecCCCeEEEEeCCCccccceeee-CcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCC--cCcEEEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKR--MQRVFCV 338 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~ 338 (452)
+++.||++.+|+..+.+....... +...+|+++-.-| +-..++.|...++|+|.++. |+.+..+..+. .+...+.
T Consensus 365 saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~ 443 (508)
T KOG0275|consen 365 SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINA 443 (508)
T ss_pred EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEE
Confidence 899999999999988765544433 4456788888888 44578888899999999987 55666654432 3557788
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
+.||.|.++++.+.|+.++.|.+.+|++-.++. -|...+-+++.||..+.+.
T Consensus 444 ~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-----------------VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 444 ILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-----------------VHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred EecCCCcEEEEEccCcEEEEEEeecCceeeeee-----------------cccccccccccCcccchhh
Confidence 899999999999999999999999999877775 4455667788888877443
No 113
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.8e-27 Score=194.94 Aligned_cols=236 Identities=22% Similarity=0.434 Sum_probs=193.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCc---eEE------------------EeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEe
Q 012994 80 KGFFSGSMDGDIRLWDIANRR---TVC------------------QYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~---~~~------------------~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd 137 (452)
+++|.|+.|..|.|||+.-.. +.. .-.+|+..|.+++|+. ..+.||+||.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 799999999999999986211 111 1236889999999987 346899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+.++ ++...+..|.+.|.++.|+|..+.
T Consensus 273 ~~~g----------------------------------------------------~p~~s~~~~~k~Vq~l~wh~~~p~ 300 (463)
T KOG0270|consen 273 VDTG----------------------------------------------------KPKSSITHHGKKVQTLEWHPYEPS 300 (463)
T ss_pred cCCC----------------------------------------------------CcceehhhcCCceeEEEecCCCce
Confidence 9655 455666678899999999999999
Q ss_pred EEEEEecCCeEEEEEccC-CCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 218 VLATTASDRSITLYDLRM-SSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
+|++|+.|++|.+.|.|. ...-......+.+..++|.|.....++++..+|.++-+|+|+...+......|.++|.+++
T Consensus 301 ~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~ 380 (463)
T KOG0270|consen 301 VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS 380 (463)
T ss_pred EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEE
Confidence 999999999999999995 3444566778889999999999999999999999999999999999999999999999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCceeeee-ccCCcCcEEEEEEcCCCC-EEEEeeCCCcEEEeeccccccc
Q 012994 297 YSPT-GREFVTGSYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 297 ~s~~-g~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
+++. -.+++|++.|+.|++|++......... +....+...|.++.|+-. +++.||..+.++|||+.++..+
T Consensus 381 ~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 381 VNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9984 457899999999999999865443222 122234577778888654 5677888889999999887654
No 114
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=4.6e-25 Score=187.86 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=215.3
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
.-|.|++|.++| -++||.++|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||-. -+..
T Consensus 247 k~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~-y~k~-- 320 (626)
T KOG2106|consen 247 KFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDN-YRKL-- 320 (626)
T ss_pred eEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccc-cccc--
Confidence 579999999996 489999999999999988777777779999999999999986 5569999999999932 2221
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 226 (452)
.+.......+.+..++-...+.++.+..+.|.-=.++.+- .....+|.+....++.+|+. +++++++.|+
T Consensus 321 --------r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f-~~~v~gh~delwgla~hps~-~q~~T~gqdk 390 (626)
T KOG2106|consen 321 --------RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF-TLTVQGHGDELWGLATHPSK-NQLLTCGQDK 390 (626)
T ss_pred --------ccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc-eEEEEecccceeeEEcCCCh-hheeeccCcc
Confidence 2222223334444444443342222222344444444433 33445678899999999987 7899999999
Q ss_pred eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEE
Q 012994 227 SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 306 (452)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 306 (452)
.+++|+ ..+.........+..++.|+|.+ .+++|...|...+.|..+ ......... ..+++++.|+|+|.+||.
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECADFHPSG--VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEeeccCcc--eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEE
Confidence 999999 77788888889999999999999 799999999999999988 334444444 789999999999999999
Q ss_pred EeCCCeEEEEECCCC-ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 307 GSYDRTIRIFQYNGG-RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 307 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
|+.|+.|++|.+..+ .........+..+|+.+.||+|+++|.+-+.|-.|..|.....+++
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 999999999998754 4444444444489999999999999999999999999955444433
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.6e-27 Score=208.83 Aligned_cols=280 Identities=15% Similarity=0.286 Sum_probs=213.6
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----eEEEeec---CCCCeeEEEEcc-CCCeEEEEeCCCcEEEEe
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYSG---HQGAVRGLTVST-DGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~---h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd 137 (452)
.....+|..+++- ..++.++. ..+.|+.+.... +...+.. -...+..+.|.. +.++|||++..|.|.+||
T Consensus 39 k~~~nAIs~nr~~-~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 39 KAKANAISVNRDI-NQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ccccceEeecCCc-ceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 3456677777886 66666664 356777665332 1111111 112456678876 567999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+... ...+.+..|..|...++++.|++..++
T Consensus 117 lnk~-------------------------------------------------~rnk~l~~f~EH~Rs~~~ldfh~tep~ 147 (839)
T KOG0269|consen 117 LNKS-------------------------------------------------IRNKLLTVFNEHERSANKLDFHSTEPN 147 (839)
T ss_pred cCcc-------------------------------------------------ccchhhhHhhhhccceeeeeeccCCcc
Confidence 9542 123456778889999999999999999
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
+|++|+.||.|++||++..+....+.. ...+..+.|+|.....|+++.+.|.+.+||++........+.+|.++|.++.
T Consensus 148 iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n 227 (839)
T KOG0269|consen 148 ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN 227 (839)
T ss_pred EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence 999999999999999999887776654 4567899999999999999999999999999999999888999999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCE-EEEee--CCCcEEEeecccccc-cccCCh
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY-VISGS--DDTNLRLWKAKASEQ-LGVLHP 372 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~--~dg~i~iw~~~~~~~-~~~~~~ 372 (452)
|+|++.+||||+.|+.|+|||+.+++...........+|.+|.|-|..++ |++++ .|-.|+|||+...-. ..++
T Consensus 228 whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~-- 305 (839)
T KOG0269|consen 228 WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF-- 305 (839)
T ss_pred ecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--
Confidence 99999999999999999999999776554444444589999999998765 55544 488999999974322 1222
Q ss_pred hhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHH
Q 012994 373 REQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASL 413 (452)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 413 (452)
..|.+.+..++|....+..+.+.+.+
T Consensus 306 ---------------~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 306 ---------------LEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred ---------------eccCccccceeccCCCceeeEeecCc
Confidence 25677777777766555544444433
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.9e-25 Score=178.71 Aligned_cols=255 Identities=19% Similarity=0.329 Sum_probs=188.0
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEEEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iw 136 (452)
.+|.+-|.|+.|.+.| +.+|||+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 6799999999999999 99999999999999996543 45566789999999999965 68999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC-
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE- 215 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~- 215 (452)
.=...... .. . ........+......|+++.|.|..
T Consensus 89 EE~~~~~~----~~--------~-------------------------------~~Wv~~ttl~DsrssV~DV~FaP~hl 125 (361)
T KOG2445|consen 89 EEQEKSEE----AH--------G-------------------------------RRWVRRTTLVDSRSSVTDVKFAPKHL 125 (361)
T ss_pred eecccccc----cc--------c-------------------------------ceeEEEEEeecCCcceeEEEecchhc
Confidence 85311100 00 0 0112234455567889999999953
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceE------EE--------eecccceEEEccCC--CceEEeecCC-----CeEEEEe
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARK------VI--------MRTKSNSISWNPME--PMNFTAANED-----CNCYSYD 274 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~------~~--------~~~~~~~~~~~~~~--~~~~~~~~~~-----~~i~~~d 274 (452)
+-.|++++.||.++||+......+.. +. ......++.|+|.. ..++++|+.+ +.+++|.
T Consensus 126 GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye 205 (361)
T KOG2445|consen 126 GLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE 205 (361)
T ss_pred ceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE
Confidence 25689999999999998755433222 22 23445688898753 3456666655 4667776
Q ss_pred CCCcc---ccceeeeCcccceEEEEEcCC----CCEEEEEeCCCeEEEEECCCCc-----------------ee--eeec
Q 012994 275 SRKLD---EAKCVHMGHESAVMDIDYSPT----GREFVTGSYDRTIRIFQYNGGR-----------------SR--EIYH 328 (452)
Q Consensus 275 ~~~~~---~~~~~~~~~~~~v~~~~~s~~----g~~l~s~~~dg~i~iwd~~~~~-----------------~~--~~~~ 328 (452)
..... .....+.+|..+|++++|.|+ -..||+++.|| |+||.+.... .+ ....
T Consensus 206 ~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~ 284 (361)
T KOG2445|consen 206 YNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL 284 (361)
T ss_pred ecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec
Confidence 54433 222334589999999999994 24799999999 9999987311 01 1114
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
..|.+.|+.+.|.-.|..|++.|+||.|++|...
T Consensus 285 ~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 285 DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 5566899999999999999999999999999864
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=9.4e-26 Score=199.08 Aligned_cols=323 Identities=17% Similarity=0.221 Sum_probs=229.4
Q ss_pred cccccccccccEEEEEeCCCC--cceEEEeeCCCcEEEEeCCCCc---------------------eE----------EE
Q 012994 58 FIGALDGHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIANRR---------------------TV----------CQ 104 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~--~~~l~tg~~dg~i~iwd~~~~~---------------------~~----------~~ 104 (452)
.+..+.||.+.|.+++|...+ ..+||++|.|..|+||.+.-+. .. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eal 262 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEAL 262 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhh
Confidence 456789999999999998765 2578999999999999864221 01 01
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (452)
+.||...|+++.|+|.+..|++++.|.++.+|......-+-.... ..-........++..-|++++..+++.+
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v-----RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~ 337 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV-----RLGEVGGSAGGFWGGLWSPNSNVIIAHGRT 337 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEE-----EeecccccccceeeEEEcCCCCEEEEeccc
Confidence 248999999999999998999999999999998765421111000 0000002234688999999999998887
Q ss_pred CeEEEEeCCC---CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC--------------------Cc
Q 012994 183 AQVDIWNHNR---SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS--------------------PA 239 (452)
Q Consensus 183 ~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------~~ 239 (452)
|..++|.... ......+.+|.+.|.+++|.|.| .+|++.+.|-+-++|-.-..+ .+
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 6799998322 23445677899999999999988 688899999888877421000 00
Q ss_pred e---------------E---------------------------------------------------------------
Q 012994 240 R---------------K--------------------------------------------------------------- 241 (452)
Q Consensus 240 ~---------------~--------------------------------------------------------------- 241 (452)
. .
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 0 0
Q ss_pred -------------------------EEeecccceEEEccCCCceEEeecC-----CCeEEEEeCCCccccceeeeCcccc
Q 012994 242 -------------------------VIMRTKSNSISWNPMEPMNFTAANE-----DCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 242 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
+.+...+.+++.+|+++. +++++. ...|++|+..+..... .+.+|.-.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl-iASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLT 574 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL-IASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLT 574 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE-EeehhhhCCccceEEEEEeccchhhhh-eecccceE
Confidence 001122345556666554 333332 3468899988876655 56699999
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee---eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc--cc
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI---YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS--EQ 366 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~ 366 (452)
|+.++|||||++|++.+.|.++.+|.......... ....|..-|+++.|+|++.+++|++.|..|+||..... +.
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh
Confidence 99999999999999999999999999865433221 24556678999999999999999999999999999877 33
Q ss_pred cccCChhhhhhhHHHHHHHHhhccCccccccccCCCC
Q 012994 367 LGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 403 (452)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
+..+ ....+...++.++++|-.
T Consensus 655 i~~~---------------a~~~~~~aVTAv~~~~~~ 676 (764)
T KOG1063|consen 655 ISRF---------------ACLKFSLAVTAVAYLPVD 676 (764)
T ss_pred hhhh---------------chhccCCceeeEEeeccc
Confidence 3222 122556667777776643
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=191.39 Aligned_cols=270 Identities=14% Similarity=0.229 Sum_probs=205.7
Q ss_pred eeCC-CcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE
Q 012994 85 GSMD-GDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV 161 (452)
Q Consensus 85 g~~d-g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (452)
++.| .++.+||+.+|.....+++. ...-.++..- ++.+++++.. -..+.+|.+.... .......
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~------------~~~q~~v 79 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKD------------QVVQYIV 79 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchh------------hhhhhcc
Confidence 3444 45999999999998888764 2222222222 2356666653 4578999986542 2224555
Q ss_pred ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC----
Q 012994 162 WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM---- 235 (452)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---- 235 (452)
.++.+.++..+|.|.+++.++ +++++|.+.+|..+..+..|...|+|+.|+.++ .+|++|+.||.|.+|++..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccc
Confidence 678899999999999999985 899999999999999999999999999999988 7999999999999998642
Q ss_pred -----CCCceEEE-eecccceEEEccC-CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe
Q 012994 236 -----SSPARKVI-MRTKSNSISWNPM-EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 236 -----~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 308 (452)
..+...+. +.-.++.+...+. ....+++++.|.++++||+....-...+ .....+.+++++|-++.+++|+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti--~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI--TFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE--ecCCcceeEEEcccccEEEecC
Confidence 22333332 2234555555554 3456899999999999999887555444 3456899999999999999999
Q ss_pred CCCeEEEEECCCCc----------------eeeeeccCCcC--cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 309 YDRTIRIFQYNGGR----------------SREIYHTKRMQ--RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 309 ~dg~i~iwd~~~~~----------------~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.+|.|.+.++.... ....+ .+|.. .|+|++.+-||.+|++|+.||.++|||+.+.+++.++
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 99999998875432 11222 23334 8999999999999999999999999999999988777
Q ss_pred C
Q 012994 371 H 371 (452)
Q Consensus 371 ~ 371 (452)
.
T Consensus 316 ~ 316 (476)
T KOG0646|consen 316 Q 316 (476)
T ss_pred h
Confidence 4
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.6e-25 Score=195.52 Aligned_cols=279 Identities=18% Similarity=0.310 Sum_probs=223.4
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE--EEeecCCCCeeE-EEEcc-CCCeEEEEeCCCc
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQYSGHQGAVRG-LTVST-DGRILVSCGTDCT 132 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~-~~~~l~s~~~dg~ 132 (452)
.+.+.+.||+..|..+++.+. ..++++|.||++++|+-...+.+ ..+.+|.+.|.. +++-+ ++-.|++|+.|++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred eeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 466789999999999998876 57999999999999997655443 456778888877 88876 5556999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
+.+|.+.... .......|...|++++...++. +++++ .++++|-.. +....+.+|...|.++.
T Consensus 83 i~v~~~~~~~------------P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~ 147 (745)
T KOG0301|consen 83 IIVFKLSQAE------------PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVA 147 (745)
T ss_pred EEEEecCCCC------------chhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeee
Confidence 9999997763 3334556677888888877877 66665 679999764 45566999999999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
..|.+ .+++|+.|.+|++|.- ++.++.+.. ...+..++..++.. |++++.||.|+.|++. ......+.+|+
T Consensus 148 ~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--ge~l~~~~ght 219 (745)
T KOG0301|consen 148 SLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--GEVLLEMHGHT 219 (745)
T ss_pred ecCCC--cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEecc--Cceeeeeeccc
Confidence 99976 6889999999999975 555555553 45567778877654 8999999999999994 34555667999
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
+-|.++...+++..+++++.|++++||+.. .+.+.+..+. ..|+++.+-++|. |++|++||.|+||.....
T Consensus 220 n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt-tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 220 NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT-TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc-cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999999988888999999999999999987 5555554433 5799999998887 677999999999987644
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.8e-26 Score=191.54 Aligned_cols=210 Identities=24% Similarity=0.402 Sum_probs=177.9
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-------eEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCc
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-------TVCQYSGHQGAVRGLTVST-DGRILVSCGTDCT 132 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 132 (452)
.|.||.+.=++|+|++.....|++|+.|++|++||+.... +...+.+|...|..++|++ +...|++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 7899999888999999877899999999999999987542 3556789999999999999 6678999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+.|||++++ +.++......|.+.|.|++|+
T Consensus 252 L~iwD~R~~--------------------------------------------------~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 252 LMIWDTRSN--------------------------------------------------TSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEEcCCC--------------------------------------------------CCCCcccccccCCceeEEEeC
Confidence 999999753 123345556789999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCC-ceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc---------
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSP-ARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--------- 281 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------- 281 (452)
|.+..+||+|+.|++|.+||+|+... +..+. +...+..+.|+|....++++++.|+.+.+||+......
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 99999999999999999999997653 34443 45677899999999999999999999999999865433
Q ss_pred ----ceeeeCcccceEEEEEcCCCCE-EEEEeCCCeEEEEECCC
Q 012994 282 ----KCVHMGHESAVMDIDYSPTGRE-FVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 282 ----~~~~~~~~~~v~~~~~s~~g~~-l~s~~~dg~i~iwd~~~ 320 (452)
..+..||...|..+.|+|+..+ |++.+.|+.+.||....
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 3556699999999999997765 77888999999999863
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=184.86 Aligned_cols=270 Identities=16% Similarity=0.269 Sum_probs=216.7
Q ss_pred hhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC------C-------------
Q 012994 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA------N------------- 98 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~------~------------- 98 (452)
..+...+.....+|.+.++.++.++.||.+.|+|+.|++.+ .++++++.|++-.||... .
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 34455667778899999999999999999999999999998 999999999999999621 0
Q ss_pred -----------------C----ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCe
Q 012994 99 -----------------R----RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (452)
Q Consensus 99 -----------------~----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (452)
+ .++..+.+|.+.|.+..|...|+.++++++|.+..+||++++
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---------------- 304 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---------------- 304 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------
Confidence 0 135567788899999999888889999999998888888554
Q ss_pred eEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC
Q 012994 158 AVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 237 (452)
.++..+.+|....+.++-+|.. .++++.+.|.+.++||++..-
T Consensus 305 ------------------------------------e~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI 347 (481)
T KOG0300|consen 305 ------------------------------------EVVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAI 347 (481)
T ss_pred ------------------------------------ceeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhc
Confidence 4577778888999999999976 799999999999999998432
Q ss_pred C-ceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEE
Q 012994 238 P-ARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 315 (452)
Q Consensus 238 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~i 315 (452)
. +..+. +...+++..|..+. .+++|+.|.++.+||+++...+..... ..++++.++.+..+..|+.--.+..|++
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRl 424 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRL 424 (481)
T ss_pred ceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEE
Confidence 2 22222 23445667776554 489999999999999999887776653 4578999999988889999999999999
Q ss_pred EECCCCceeee---eccCCcCcEEEEEEcCCC--CEEEEeeCCCcEEEeecccc
Q 012994 316 FQYNGGRSREI---YHTKRMQRVFCVKFSCDA--SYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 316 wd~~~~~~~~~---~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~ 364 (452)
||++..+.... -..+|...|+|++|..+. .-|+++|.|..+.=|++...
T Consensus 425 fDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 425 FDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred EecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99987654333 345666789999998654 35889999999999998754
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.7e-26 Score=206.30 Aligned_cols=241 Identities=18% Similarity=0.320 Sum_probs=197.8
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCC---CceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIAN---RRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
.+..+.|.....++|||++..|.|.+||+.. .+.+..|..|...++++.|++ ...+|++||.||+|++||++....
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3455677765568999999999999999987 456678889999999999998 567899999999999999988754
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CCeEEEeC--CeEEEEeCCCC-CcceecccCCCceEEEEECCCCCcEE
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
...+.. -...+..+.|+|. +..|+++. |.+.+||++.. ++...+..|.++|.|+.|+|+. .+|
T Consensus 169 ~~t~~~------------nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~l 235 (839)
T KOG0269|consen 169 KSTFRS------------NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWL 235 (839)
T ss_pred cccccc------------cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCC-cee
Confidence 433322 3446677788774 45566654 78999999875 4667888999999999999965 899
Q ss_pred EEEecCCeEEEEEccCCC--CceEEEeecccceEEEccCCCceEEeecC--CCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 220 ATTASDRSITLYDLRMSS--PARKVIMRTKSNSISWNPMEPMNFTAANE--DCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
|+||.|+.|+|||+.+.+ ....+....++..+.|-|...+.+++++. |-.|++||++....+...+..|...++.+
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 999999999999998665 44555666788999999999998888764 67899999999999999999999999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCC
Q 012994 296 DYSP-TGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 296 ~~s~-~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
+|.. |-..|.+++.||+|..-.+++.
T Consensus 316 ~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eccCCCceeeEeecCccHHHHhhhhcc
Confidence 9976 5567889999998876665544
No 123
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.6e-24 Score=189.39 Aligned_cols=274 Identities=8% Similarity=0.085 Sum_probs=202.1
Q ss_pred HHhhhhhccccccccccccccEEEEEeCCCCcceE-EEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE
Q 012994 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (452)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 126 (452)
+.+|+..+...+..+.+|.. +.+++|+|++ ..+ ++++.++.|++||..+++....+..+.. +..++|+|+++.+++
T Consensus 13 v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~ 89 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPVGQR-PRGITLSKDG-KLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYI 89 (300)
T ss_pred EEEEECCCCceEEEEECCCC-CCceEECCCC-CEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEE
Confidence 34555555667777776544 6789999998 655 6778899999999999888777765443 567899999987765
Q ss_pred E-eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC---eEEEEeCCCCCcceecccC
Q 012994 127 C-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 127 ~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~ 202 (452)
+ +.|+.+.+||+.+.... ...........+.++|++.+++++.. .+.+||..+++....+..
T Consensus 90 ~~~~~~~l~~~d~~~~~~~-------------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 90 ANEDDNLVTVIDIETRKVL-------------AEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred EcCCCCeEEEEECCCCeEE-------------eEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 4 56899999999765322 12222234567899999999888763 367789888776554432
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec--------ccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT--------KSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
...+.++.|+|++..+++++..++.|.+||+.+.+....+.... ....+.++|++..++++...++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 33457899999985454566679999999999887666554321 2246889999998777777778899999
Q ss_pred CCCccccceeeeCcccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 275 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
..+....... .+...+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..+..+ ...+.++++|
T Consensus 236 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 300 (300)
T TIGR03866 236 AKTYEVLDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG--RLPWGVVVRP 300 (300)
T ss_pred CCCCcEEEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc--cccceeEeCC
Confidence 9865543332 234578899999999999886 46899999999999987777554 5568888875
No 124
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4e-25 Score=205.15 Aligned_cols=259 Identities=18% Similarity=0.290 Sum_probs=206.3
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC------------------CceEEEeecCCCC
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------------------RRTVCQYSGHQGA 111 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~------------------~~~~~~~~~h~~~ 111 (452)
.++..-.+.+.++..|.+.|+|+.|+||| .+||+|+.|+.|.||.... .+.+..+.+|.+.
T Consensus 53 ~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D 131 (942)
T KOG0973|consen 53 EKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD 131 (942)
T ss_pred hhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc
Confidence 34433355677888999999999999999 9999999999999998762 1356778899999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
|..++|+|++.+|++++.|++|.+||..+.. .......+...|-.+.|.|-|+++++-+ +++++|+
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccce------------eeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence 9999999999999999999999999998773 3334455667788999999999999987 4699999
Q ss_pred CCCCCcceecccC------CCceEEEEECCCCCcEEEEEec----CCeEEEEEccCCCCceEEE-eecccceEEEccC--
Q 012994 190 HNRSQPINSFQWG------TDTVISVRFNPAEPNVLATTAS----DRSITLYDLRMSSPARKVI-MRTKSNSISWNPM-- 256 (452)
Q Consensus 190 ~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~-- 256 (452)
..+......+..+ ...+..+.|+|+| .+|++... -.++.|.+-.+.+....+. +..+..++.|+|.
T Consensus 200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lf 278 (942)
T KOG0973|consen 200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLF 278 (942)
T ss_pred cccceeeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHh
Confidence 8776655555442 3467889999999 67766532 2357787776666555544 4556678888772
Q ss_pred ------C----C----ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 012994 257 ------E----P----MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 257 ------~----~----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
| . .++++|+.|+.+.+|......+......-....|.+++|+|||-.|+.+|.||+|.++.++...
T Consensus 279 e~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 279 ERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 1 1 1688899999999999987777666665667789999999999999999999999999988543
No 125
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.8e-25 Score=177.55 Aligned_cols=225 Identities=23% Similarity=0.363 Sum_probs=179.9
Q ss_pred hhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCC-cceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEE
Q 012994 38 AVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 116 (452)
+++.......++++++.....+..+-.|.+.|+++.|.+.- ...|++|+.||.|.+|+....+.+..+++|.+.|+.++
T Consensus 55 ~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~ls 134 (362)
T KOG0294|consen 55 YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLS 134 (362)
T ss_pred eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeE
Confidence 44445556667788888888888899999999999999874 13899999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCc
Q 012994 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQP 195 (452)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~ 195 (452)
.+|.+++-++.+.|+.+++||+-.++. ............+.|+|.|..++... ..|-+|.+.....
T Consensus 135 iHPS~KLALsVg~D~~lr~WNLV~Gr~-------------a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v 201 (362)
T KOG0294|consen 135 IHPSGKLALSVGGDQVLRTWNLVRGRV-------------AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASV 201 (362)
T ss_pred ecCCCceEEEEcCCceeeeehhhcCcc-------------ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhH
Confidence 999999999999999999999988743 22333334444588899999777766 5789998888776
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
...+.. ...+.|+.|... ..|++|+.|+.|.+||.....+..
T Consensus 202 ~~~i~~-~~r~l~~~~l~~--~~L~vG~d~~~i~~~D~ds~~~~~----------------------------------- 243 (362)
T KOG0294|consen 202 FREIEN-PKRILCATFLDG--SELLVGGDNEWISLKDTDSDTPLT----------------------------------- 243 (362)
T ss_pred hhhhhc-cccceeeeecCC--ceEEEecCCceEEEeccCCCccce-----------------------------------
Confidence 666554 255667776643 578889999999999876543332
Q ss_pred CCccccceeeeCcccceEEEEE--cCCCCEEEEEeCCCeEEEEECCCC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDY--SPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
.+.+|...|-++.+ .|++.+|+|++.||.|++||++..
T Consensus 244 --------~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 --------EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred --------eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 34489999998874 457889999999999999999865
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3.4e-25 Score=193.81 Aligned_cols=270 Identities=20% Similarity=0.319 Sum_probs=191.4
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE--eecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSGHQGAVRGLTVST-DGRILVSCGTDCTVKLW 136 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iw 136 (452)
.....|.+.|..+.|-| |...|++++.|.++++||+.+.+.+.. +.+|.+.|.+++|.| |...|++|+.||.|.||
T Consensus 94 k~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred cccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 45678999999999999 458999999999999999999988776 889999999999999 55689999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCC---------CcceecccCCC---
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS---------QPINSFQWGTD--- 204 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~--- 204 (452)
|+........... ..++++..++ +.+..-..+..
T Consensus 173 D~R~n~~d~~e~~----------------------------------~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 173 DCRCNGVDALEEF----------------------------------DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred EEeccchhhHHHH----------------------------------hhhhhccccCCCCCCchhhccccccccccCcee
Confidence 9965431100000 0000000000 11111122233
Q ss_pred -ceEEEEECCCCCcEEEEEec-CCeEEEEEccCCCCceEEEe------------ecccceEEEccCCCceEEeecCCCeE
Q 012994 205 -TVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPARKVIM------------RTKSNSISWNPMEPMNFTAANEDCNC 270 (452)
Q Consensus 205 -~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (452)
.|+.+.|- |+ ..||+++. |+.|++||++.......... .....++.....|.++++.+. |+.|
T Consensus 219 ssvTvv~fk-De-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sI 295 (720)
T KOG0321|consen 219 SSVTVVLFK-DE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSI 295 (720)
T ss_pred eeeEEEEEe-cc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcE
Confidence 35555554 44 67787777 99999999998664433221 122345666666777666666 9999
Q ss_pred EEEeCCCcccc-ceeeeCcccc--eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC-CE
Q 012994 271 YSYDSRKLDEA-KCVHMGHESA--VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SY 346 (452)
Q Consensus 271 ~~~d~~~~~~~-~~~~~~~~~~--v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 346 (452)
++|++...... ...+.++... -..-..+||+.+|++|+.|...++|.+.+.........+|...|++++|.|.. .-
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~ 375 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP 375 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC
Confidence 99999876543 2222233221 12235789999999999999999999999887777778888899999998843 34
Q ss_pred EEEeeCCCcEEEeeccccccc
Q 012994 347 VISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 347 l~s~~~dg~i~iw~~~~~~~~ 367 (452)
++++++|..++||++..+-.-
T Consensus 376 v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 376 VATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred ceeeccCcceEEEeccCchhh
Confidence 777799999999999765443
No 127
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=178.71 Aligned_cols=248 Identities=22% Similarity=0.332 Sum_probs=192.5
Q ss_pred ccccccccEEEEEeCCCC-cceEEEeeCCCcEEEEeCCC----------------CceEEEeecCCCCeeEEEEcc-CCC
Q 012994 61 ALDGHRDGISCMAKNPNY-LKGFFSGSMDGDIRLWDIAN----------------RRTVCQYSGHQGAVRGLTVST-DGR 122 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~-~~~l~tg~~dg~i~iwd~~~----------------~~~~~~~~~h~~~v~~l~~~~-~~~ 122 (452)
..-+|.+.++.+.-++-+ ..+.++-+..|.|.|||+.. .+++.++.+|.+.=++|+||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345688888888887764 24566778899999999752 356788899999999999999 223
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccC
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 202 (452)
.|+||.--+.|++|...++... + -...+.+|
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~---------------------------------------------v----d~~Pf~gH 256 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWK---------------------------------------------V----DQRPFTGH 256 (440)
T ss_pred ccccCccccceEeeeeccCcee---------------------------------------------e----cCcccccc
Confidence 5888888889999998765321 0 12344568
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC---CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS---PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD 279 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 279 (452)
...|-.++|+|....+|++|+.||+|+|||+|.+. .+..-.+...++.++|+...+ ++++|+.+|.+.+||+++..
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~ 335 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFK 335 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhcc
Confidence 99999999999999999999999999999999883 444455677889999999888 89999999999999999764
Q ss_pred --ccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce------------------eeeeccCCcCcEEEE
Q 012994 280 --EAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRS------------------REIYHTKRMQRVFCV 338 (452)
Q Consensus 280 --~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~------------------~~~~~~~~~~~v~~~ 338 (452)
.+...+.-|..+|+++.|+| +...|++++.|..|.+||+.-..- +...+.+ ...+..+
T Consensus 336 ~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~Kev 414 (440)
T KOG0302|consen 336 SGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEV 414 (440)
T ss_pred CCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc-hhHhhhh
Confidence 45667778999999999999 456788888999999999863221 1112222 2568889
Q ss_pred EEcCC-CCEEEEeeCCCcEEEee
Q 012994 339 KFSCD-ASYVISGSDDTNLRLWK 360 (452)
Q Consensus 339 ~~s~~-~~~l~s~~~dg~i~iw~ 360 (452)
.|++. ..+|++.+.|| +.||.
T Consensus 415 hWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 415 HWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eeccCCCCeEEEecccc-eeEEE
Confidence 99984 44778877787 45654
No 128
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.4e-24 Score=171.10 Aligned_cols=246 Identities=14% Similarity=0.211 Sum_probs=190.3
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVD 186 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ 186 (452)
....|.+|.|+|.++.|+.+++||++++||+... .....+.+..++.+++|.++...+..+ +|.|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~-------------~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN-------------SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVR 78 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccch-------------hhhhheecCCceeeeeccCCceEEEeccCceEE
Confidence 3568999999998889999999999999999765 333445667788888888865544443 38899
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecC
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (452)
.+|++++... .+..|...|.|+..++.. ..+++|+.|++|++||.+.......+.....+.++ ......+++|+.
T Consensus 79 ~~Dln~~~~~-~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~---~v~g~~LvVg~~ 153 (323)
T KOG1036|consen 79 RYDLNTGNED-QIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCM---DVSGNRLVVGTS 153 (323)
T ss_pred EEEecCCcce-eeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccccccccccccCceEEEE---eccCCEEEEeec
Confidence 9999988754 445589999999999865 68999999999999999985555555444433333 334556899999
Q ss_pred CCeEEEEeCCCccccceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceeeeeccCC--------cC
Q 012994 267 DCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG----RSREIYHTKR--------MQ 333 (452)
Q Consensus 267 ~~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~--------~~ 333 (452)
+..+.+||+++.....+... .-...+.++++-|++.-.++++-||.|.+=.++.. .....+..|. .-
T Consensus 154 ~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 154 DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred CceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 99999999999877654332 34557899999998888999999999988666554 1122222221 13
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+|++++|+|-...|+||+.||.|.+||..+.+.+..+.
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~ 271 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA 271 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhcc
Confidence 79999999999999999999999999999988877664
No 129
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=184.66 Aligned_cols=282 Identities=17% Similarity=0.150 Sum_probs=203.4
Q ss_pred HhhhhHHHhhhhhc----cccccccc-cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE------------E
Q 012994 42 VRALTAAKLEKIFA----RPFIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC------------Q 104 (452)
Q Consensus 42 ~~~~~~~~~~~~~~----~~~~~~l~-~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~------------~ 104 (452)
......+++|+... .+..+.|. .-+..|++++|++.| ..|++.+.....+|+|-...+.+. .
T Consensus 185 Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~n 263 (641)
T KOG0772|consen 185 GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYN 263 (641)
T ss_pred ccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhc
Confidence 33444556666532 22233332 345589999999999 777777777889999965433222 2
Q ss_pred eecCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC
Q 012994 105 YSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (452)
.+||...++|.+|+|+ ...++|++.||++++||+...+. ...++...
T Consensus 264 TKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~------------q~qVik~k-------------------- 311 (641)
T KOG0772|consen 264 TKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS------------QLQVIKTK-------------------- 311 (641)
T ss_pred cCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh------------heeEEeec--------------------
Confidence 3589999999999995 45799999999999999976531 11111100
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE----e--ecccceEEEccCC
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI----M--RTKSNSISWNPME 257 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~--~~~~~~~~~~~~~ 257 (452)
...+..-+++.++|++++ .++|+|..||.|.+||.........+. + +..++++.|++++
T Consensus 312 --------------~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 312 --------------PAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred --------------cCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 001224568899999999 679999999999999986544332222 1 3467899999999
Q ss_pred CceEEeecCCCeEEEEeCCCccccceeeeCcc--cceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCceeeeecc
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE--SAVMDIDYSPTGREFVTGSY------DRTIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~s~~~------dg~i~iwd~~~~~~~~~~~~ 329 (452)
+. +++-+.|+.+.+||+++..++.....+-. .+-+.++|||+.++|++|+. .|.+.+||..+-..+..+..
T Consensus 377 ~~-LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i 455 (641)
T KOG0772|consen 377 NY-LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI 455 (641)
T ss_pred ch-hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC
Confidence 87 77888899999999999988877665433 35678999999999999864 57899999988777666544
Q ss_pred CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc----ccccccCChh
Q 012994 330 KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA----SEQLGVLHPR 373 (452)
Q Consensus 330 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~----~~~~~~~~~~ 373 (452)
. ...|..+.|+|.-+.|+.|+.||.++||=-.+ |..++...++
T Consensus 456 ~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~ 502 (641)
T KOG0772|consen 456 S-TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKPP 502 (641)
T ss_pred C-CceEEEEeecchhhheeeecCCCceEEEECccccccchhheeecCc
Confidence 4 37799999999888899999999999874332 3444444443
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-24 Score=183.80 Aligned_cols=285 Identities=14% Similarity=0.201 Sum_probs=222.5
Q ss_pred CcEEEEeCCCCceEEEeecCC--CCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQ--GAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..+++||+...+....+..|+ ..+.++.|+.... .+++.+.|..+++|.-..... ..+.........
T Consensus 12 d~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~----------~Vp~~~k~~gd~ 81 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP----------EVPRVRKLTGDN 81 (673)
T ss_pred CceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCC----------ccceeeccccch
Confidence 469999998766555554333 3489999987653 233445678889997543210 111111122224
Q ss_pred eeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE
Q 012994 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
-.|++......+++++| +.|.|||++.....+.+..|...|+++.++-.+ .+|++++..|-|.|..+.++.....+.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee
Confidence 44555666667777776 579999999877888899999999999999877 799999999999999999988887777
Q ss_pred ee-c-ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 012994 244 MR-T-KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 244 ~~-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.. + .+.-+.|+|..+.++.+++.+|.+.+||.....+.......|..+...+||+| +..+|++.+.|..|.+||+..
T Consensus 161 ~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s 240 (673)
T KOG4378|consen 161 IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS 240 (673)
T ss_pred cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence 65 3 34578999999999999999999999999999888888889999999999999 556789999999999999997
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc-ccccCChhhhhhhHHHHHHHHhhccCcccccccc
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE-QLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVR 399 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (452)
.+....+... .+.+.++|+++|.+|+.|+..|.|..||+..-+ ++.++ ..|...|.+++|
T Consensus 241 ~~s~~~l~y~--~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-----------------sah~~sVt~vaf 301 (673)
T KOG4378|consen 241 QASTDRLTYS--HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-----------------SAHDASVTRVAF 301 (673)
T ss_pred ccccceeeec--CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-----------------eecccceeEEEe
Confidence 7766555444 579999999999999999999999999997543 23333 367777899999
Q ss_pred CCCC
Q 012994 400 HRHL 403 (452)
Q Consensus 400 ~~~~ 403 (452)
.|..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8763
No 131
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.4e-24 Score=174.01 Aligned_cols=273 Identities=18% Similarity=0.308 Sum_probs=204.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCe
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (452)
..+|++...|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||+++............+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---- 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---- 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC----
Confidence 5689999999999999999999999999999999999977 4568999999999999999877543332222211
Q ss_pred eEEEecCCeeeeeecCCCCeEEEeC------CeEEEEeCCCCCc-ceec-ccCCCceEEEEECCCCCcEEEEEecCCeEE
Q 012994 158 AVYVWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQP-INSF-QWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~-~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
..++.+++..-.+.+++++. ..+.+||++..+. +..+ ..|.+.|++++|+|.++++|++|+.||.|.
T Consensus 117 -----~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvn 191 (376)
T KOG1188|consen 117 -----GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVN 191 (376)
T ss_pred -----CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEE
Confidence 34566777777788888876 2499999998776 5544 459999999999999999999999999999
Q ss_pred EEEccCCC----CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-----------cccceEE
Q 012994 230 LYDLRMSS----PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-----------HESAVMD 294 (452)
Q Consensus 230 i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~v~~ 294 (452)
+||+.... ....+.....+..+.|...+-..+.+-+......+|++............ ....+..
T Consensus 192 lfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 192 LFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN 271 (376)
T ss_pred eeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee
Confidence 99997653 34455667778899999888666888888888999988766533222111 0111212
Q ss_pred EEEcC-CCCEEEEEeC-CCeEEEEECC---C---CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 295 IDYSP-TGREFVTGSY-DRTIRIFQYN---G---GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 295 ~~~s~-~g~~l~s~~~-dg~i~iwd~~---~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
. .+| ++..++.++. -|...++-+. + .+....+..+|..-|.++.|...+.+++|||.||.+.+|..+
T Consensus 272 ~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 272 E-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred c-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 2 223 4445555444 5555555443 2 334455677777889999999899999999999999999964
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.9e-25 Score=208.34 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=207.7
Q ss_pred cccEEEEEeCCCCcc---eEEEeeCCCcEEEEeCCCC------ceEEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEE
Q 012994 66 RDGISCMAKNPNYLK---GFFSGSMDGDIRLWDIANR------RTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKL 135 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~---~l~tg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~i 135 (452)
...-+.++|.+.+.. +||.|..||.|.+||...- ..+.....|.+.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 457789999988733 4899999999999997652 3456677899999999999954 59999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
||+.......... -....+.|.+++|+..-
T Consensus 144 WDlnn~~tP~~~~--------------------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG--------------------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred eccCCcCCCCCCC--------------------------------------------------CCCCcccceEeccchhh
Confidence 9997642211100 01135789999999988
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEeecc---cceEEEccCCCceEEeecCCC---eEEEEeCCCccccceeeeCcc
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMRTK---SNSISWNPMEPMNFTAANEDC---NCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~i~~~d~~~~~~~~~~~~~~~ 289 (452)
.++|++++.+|.+.|||++..+.+..+..... ...+.|+|+....++++++|. .|.+||+|....+..++.+|.
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~ 253 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQ 253 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccc
Confidence 88999999999999999999988877765444 678999999998888887654 789999999999988899999
Q ss_pred cceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEEeeCCCcEEEeeccccc
Q 012994 290 SAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 290 ~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 365 (452)
..|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+... ..++..+.|+|... .+++++-||.|.|+.+....
T Consensus 254 ~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 254 RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCC-CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999999955 89999999999999999999998888764 38999999999554 78889999999999987655
No 133
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.1e-25 Score=182.31 Aligned_cols=248 Identities=19% Similarity=0.300 Sum_probs=200.8
Q ss_pred EEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE
Q 012994 102 VCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
+..+.+|...|.|++=+|.. ..+++|+.||.|++||+....+. .....+.+.|..+++.. +.++.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~------------~~f~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI------------RTFKAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh------------heeecccCceeeEEecc-cceEEe
Confidence 45678999999999999976 68999999999999999876433 33444566777787777 555555
Q ss_pred eC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec-ccceEEEccCCC
Q 012994 181 AG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEP 258 (452)
Q Consensus 181 ~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (452)
++ .+|+.|.+... ++.++.+ ...+..+.-+..+ +.+++||.+ |.|||..-..++..+..+. .+.++.|+|...
T Consensus 126 gdDKtvK~wk~~~~-p~~tilg-~s~~~gIdh~~~~-~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGP-PLHTILG-KSVYLGIDHHRKN-SVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred cCCcceeeeeccCC-cceeeec-ccccccccccccc-ccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc
Confidence 54 57999998763 5555554 4556677666555 688888754 9999999999999988765 468999999999
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
.+++++.+|+.|.+||++.......+... ..-+.++|+|.+-.+++|+.|..++.||++........+.+|...|.++
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeee--ccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence 99999999999999999998776655432 3457899999888899999999999999998766666667777899999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
.|||.|+-+++||.|.+|+||.+..+..-..
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhh
Confidence 9999999999999999999999988765433
No 134
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.9e-24 Score=172.04 Aligned_cols=223 Identities=20% Similarity=0.321 Sum_probs=176.2
Q ss_pred ecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 106 SGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 106 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
..|.+.|+++...+ .|+++++|+.||.|.+||++...-.... ..+ ..+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-------~li--~k~---------------------- 88 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-------GLI--AKH---------------------- 88 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-------cce--ehe----------------------
Confidence 45889999999988 7899999999999999999765311000 000 000
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCC--CceEE
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPME--PMNFT 262 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 262 (452)
+.+ -....-.+|.-.|.++.|.|.+..++.+++-|.++++||..+.+....+..++.+.+-+++|.. ..+++
T Consensus 89 ~c~------v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA 162 (397)
T KOG4283|consen 89 KCI------VAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIA 162 (397)
T ss_pred eee------ccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEE
Confidence 000 0012224577789999999988789999999999999999999999999999999988898864 46788
Q ss_pred eecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCC-ceeee-------------e
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE-FVTGSYDRTIRIFQYNGG-RSREI-------------Y 327 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~~dg~i~iwd~~~~-~~~~~-------------~ 327 (452)
+|..+..+++.|+.... ....+.+|.+.|.++.|+|...+ |++|+.||.|++||++.- .+... .
T Consensus 163 ~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~ 241 (397)
T KOG4283|consen 163 AGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKT 241 (397)
T ss_pred EecCCCcEEEEeccCCc-ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccc
Confidence 89999999999998754 44567799999999999997765 789999999999999743 11111 1
Q ss_pred ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 328 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
...|.+.+..++|+.|+.++++.+.|..+++|+..+|+.
T Consensus 242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 344567899999999999999999999999999998865
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=199.57 Aligned_cols=236 Identities=21% Similarity=0.410 Sum_probs=204.4
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
+.+..|...|.|+..-..+ +.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeeccc-eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 3566799999999986665 899999999999999998888888899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
..+... ....+...+..+.|+|-+.+++.++ .++.+||.+...+...+.+|...+.++.|+|+| .
T Consensus 101 eAk~vr------------tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G-r 167 (825)
T KOG0267|consen 101 EAKIVR------------TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG-R 167 (825)
T ss_pred hhhhhh------------hhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC-c
Confidence 775432 3445566778889999999996665 579999999999999999999999999999998 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 297 (452)
+++.|++|..++|||+..++....+ ..|...+..+.|
T Consensus 168 ~v~~g~ed~tvki~d~~agk~~~ef-------------------------------------------~~~e~~v~sle~ 204 (825)
T KOG0267|consen 168 WVASGGEDNTVKIWDLTAGKLSKEF-------------------------------------------KSHEGKVQSLEF 204 (825)
T ss_pred eeeccCCcceeeeeccccccccccc-------------------------------------------cccccccccccc
Confidence 9999999999999999877655443 368889999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
+|..-++++|+.|++|++||+++-..+...... ...|.+++|+|++..+++|...
T Consensus 205 hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 205 HPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CchhhhhccCCCCceeeeeccceeEEeeccCCc-cCCceeeeecCCceeeecCchh
Confidence 999899999999999999999987766555444 4789999999999999888765
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.7e-23 Score=174.80 Aligned_cols=299 Identities=15% Similarity=0.225 Sum_probs=221.6
Q ss_pred HHHhhhhhccccccccccccccEEEEEeCCCC-cceEEEe--eCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC-CC
Q 012994 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNY-LKGFFSG--SMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GR 122 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~ 122 (452)
.+++|+..+-.-++.|.....+|.|++|++.+ ..+|+.- +.+..+.+||+..+......+..+..|....|+|. .+
T Consensus 135 hvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n 214 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN 214 (626)
T ss_pred eeeecccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc
Confidence 45677766666666777778899999999853 2444443 44667899999998888888878889999999994 45
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceeccc
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~ 201 (452)
.+++++ .|.+.+|+++.+.+......... .....+.+++|.++|..+...+ |.|.||+..+.+..+....
T Consensus 215 liit~G-k~H~~Fw~~~~~~l~k~~~~fek--------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~a 285 (626)
T KOG2106|consen 215 LIITCG-KGHLYFWTLRGGSLVKRQGIFEK--------REKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHA 285 (626)
T ss_pred EEEEeC-CceEEEEEccCCceEEEeecccc--------ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeee
Confidence 566665 57999999988765433222111 1125678999999999877655 6899999998888777779
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--------------------------------------
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-------------------------------------- 243 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------- 243 (452)
|.+.|.+++...+| .|++|+.|..|..||- .-+.++...
T Consensus 286 H~ggv~~L~~lr~G--tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 286 HDGGVFSLCMLRDG--TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred cCCceEEEEEecCc--cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 99999999999877 3567999999999992 211111110
Q ss_pred ----eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 244 ----MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+....-.++.+|+.. .+++++.|+.+.+|+-... .....-..+..++.|+|.| .+|.|+..|...+.|.+
T Consensus 363 ~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~----~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKL----EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred EEEecccceeeEEcCCChh-heeeccCcceEEEccCCce----eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 011112344455444 4888999999999993221 1222345678899999999 99999999999999999
Q ss_pred CCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
+...+.. +.. ..++++++|+|+|.+|+.|+.|+.|+||.+..+.
T Consensus 437 ~~~lv~~-~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 437 TQDLVTI-HTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred cceeEEE-Eec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 8555444 333 5899999999999999999999999999987543
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=178.30 Aligned_cols=281 Identities=15% Similarity=0.259 Sum_probs=217.6
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-EEEeecC-CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-VCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~h-~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
-..+|+||||+.+. +.||.+-.||+|.+|++...-. ...+.++ ...|.+++|++ +..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 46789999999998 8899999999999999987633 3345544 46799999995 5578999999999999998773
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcE
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~ 218 (452)
.........+.+++++.+|.+..++.+. |.+..++...++... .+....+.+.++.|+|++ ..
T Consensus 102 ------------~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~-~~ 168 (691)
T KOG2048|consen 102 ------------QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG-TK 168 (691)
T ss_pred ------------eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc-cE
Confidence 3344445567899999999999888884 545556665555432 334456899999999998 67
Q ss_pred EEEEecCCeEEEEEccCCCCceEEEe-----ecccceEEEcc--CCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 219 LATTASDRSITLYDLRMSSPARKVIM-----RTKSNSISWNP--MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
+++|+.||.|++||...+........ ......+.|+- -....+++|...|.+.+||........ ....|...
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiq-S~~~h~ad 247 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQ-SHSCHDAD 247 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhh-hhhhhhcc
Confidence 89999999999999999887773332 22234455542 144568999999999999988754433 44478899
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS---REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
|.+++..++++++++++.|+.|.-|...++.. .......|...|.+++..++ .|++|+.|+.+.+-....
T Consensus 248 Vl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 248 VLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 99999999999999999999999998887754 22334556678999999877 899999999888865543
No 138
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.6e-23 Score=165.97 Aligned_cols=289 Identities=15% Similarity=0.158 Sum_probs=199.1
Q ss_pred EEEEeCCCCce-----EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 91 IRLWDIANRRT-----VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 91 i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..-|+.+..+. +..+++|.+.|++++|+.||++|+|++.|++|++|++........ ..+........
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~nve~dh 134 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQNVEYDH 134 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhccccCCC
Confidence 44555444333 234689999999999999999999999999999999976432111 11222222235
Q ss_pred eeeeeecCCCCeEEEe---CCeEEEEeCCCCCc---c------e---ecccCCCceEEEEECCCCCcEEEEEecCCeEEE
Q 012994 166 FWAVDHQWEGDLFATA---GAQVDIWNHNRSQP---I------N---SFQWGTDTVISVRFNPAEPNVLATTASDRSITL 230 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~---~------~---~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i 230 (452)
.+.+.|.||..-++.. +..+++|.+...+. . . .-+.|.-.+..+-....+ .++++++.|..|.+
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~l 213 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICL 213 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEE
Confidence 5678899998866654 34699988754321 1 0 112244556666666555 79999999999999
Q ss_pred EEccCCCCceEEEeec-ccceEEEccCCCceEEeecCCCeEEEEeCCC-----ccc--cceeeeCcccceEEEEEcCCCC
Q 012994 231 YDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSYDSRK-----LDE--AKCVHMGHESAVMDIDYSPTGR 302 (452)
Q Consensus 231 ~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----~~~--~~~~~~~~~~~v~~~~~s~~g~ 302 (452)
|+++ ++.+..+.... .....+.+|+|++ +++++-...+.+|..-- ..+ ....+.+|.+.|..++||++..
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRF-ia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRF-IAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcE-EEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 9998 77777766543 4457788999887 45555566677776421 112 2234569999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCC-------ceeeee---ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 303 EFVTGSYDRTIRIFQYNGG-------RSREIY---HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 303 ~l~s~~~dg~i~iwd~~~~-------~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
.+++.+.||.+++||++-. +.+... .....+....++.+|+|+.|+.+. ...++++..++|+....+.
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e- 369 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE- 369 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH-
Confidence 9999999999999998621 112111 111123344899999999887654 4579999999988765442
Q ss_pred hhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 373 REQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
..|...|.+|+|.+.-..++
T Consensus 370 ---------------~~h~~~Is~is~~~~g~~~a 389 (420)
T KOG2096|consen 370 ---------------DIHSTTISSISYSSDGKYIA 389 (420)
T ss_pred ---------------HhhcCceeeEEecCCCcEEe
Confidence 26788889999988665444
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=186.98 Aligned_cols=246 Identities=20% Similarity=0.318 Sum_probs=200.4
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEcc---CCCeEEEEeCCCcEEEEeCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST---DGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~ 140 (452)
+...++.|++.+|+| ++||+|..-|+++||++.+.+....+.+|...|.|+.|+. ..++||+++.|..|+|||+..
T Consensus 457 d~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCCc-ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 346689999999999 9999999999999999999999999999999999999986 457899999999999999853
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC-CcEE
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE-PNVL 219 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l 219 (452)
. ..+++++.+|...|+++.|.-.| ...+
T Consensus 536 n---------------------------------------------------y~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 536 N---------------------------------------------------YDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred c---------------------------------------------------cchhhhhcccccceeEEEEeecCCceEE
Confidence 3 23467788899999999998765 3457
Q ss_pred EEEecCCeEEEEEccCCCCceEEE------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--Ccccc
Q 012994 220 ATTASDRSITLYDLRMSSPARKVI------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--GHESA 291 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~ 291 (452)
++++.|..|.+--.+.......+. .+.....+...|.... +++++.|..|++||+...+....+.. +|.+.
T Consensus 565 iscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~-v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 565 ISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL-VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGD 643 (1080)
T ss_pred EeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcce-EEEEecccceEEEeccccceeeeecccccCCCc
Confidence 888888876543333222222221 1223345666666554 78899999999999998776665543 56677
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
...+...|.|.|||+.+.|.++.++|+.+|+++.... +|...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus 644 lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 644 LIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8889999999999999999999999999999987764 4558899999999999999999999999999876
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.8e-23 Score=177.97 Aligned_cols=282 Identities=14% Similarity=0.182 Sum_probs=214.5
Q ss_pred hhHHHhhhhhcccccccccccc--ccEEEEEeCCCCcceEEEe--eCCCcEEEEeCCCC--ce--EEEeecCCCCeeEEE
Q 012994 45 LTAAKLEKIFARPFIGALDGHR--DGISCMAKNPNYLKGFFSG--SMDGDIRLWDIANR--RT--VCQYSGHQGAVRGLT 116 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~--~~V~~~~~~~~~~~~l~tg--~~dg~i~iwd~~~~--~~--~~~~~~h~~~v~~l~ 116 (452)
-..+++|+..+......+..|+ -.+.++.|+... .|+++ +.|..|++|.-... +. +....+ ..-.|++
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n--~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~ 86 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN--FLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVA 86 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccc--eEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHh
Confidence 3445677766555544444443 248999999874 35544 45778899974322 11 222222 2344555
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC
Q 012994 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194 (452)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~ 194 (452)
......|+++|+..+.|+|||+....+... ...+...|+++.+.....+++++. |+|.|..+.++.
T Consensus 87 ~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~------------lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 87 CASQSLYEISGGQSGCVKIWDLRAKLIHRF------------LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ 154 (673)
T ss_pred hhhcceeeeccCcCceeeehhhHHHHHhhh------------ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc
Confidence 555558999999999999999985533222 223456788999999999999875 799999999998
Q ss_pred cceecccC-CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEE
Q 012994 195 PINSFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 195 ~~~~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
....|... ...+.-+.++|....+|.+++.+|.|.+||+....+..... +..+...++|+|....++++.+.|..|+
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 88888765 34566899999988889999999999999999888776654 4566789999999999999999999999
Q ss_pred EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 272 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
+||.+......++. ...+...++|+++|.+|+.|+..|.|..||++..+........|...|++++|-|..
T Consensus 235 ~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred Eeecccccccceee--ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999655554443 345788999999999999999999999999998776666666666889999998765
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.6e-22 Score=177.25 Aligned_cols=311 Identities=14% Similarity=0.159 Sum_probs=213.2
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE--EeecCCCCeeEEEEccCCC
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGR 122 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~ 122 (452)
...+..|+..+......+..-.+.|.+++.+|.+ ..++.|+.||.+..++...+.... .+....+.|.++.|+|++.
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~ 167 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT 167 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc
Confidence 3345678888888888888889999999999998 999999999988888877766543 3445678999999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceec
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF 199 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~ 199 (452)
.|++|+.||.|++||...+.......-. ...... ...-++++.+-.++. +++++ |.|.+||...+..++.+
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~-----~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQ-----LDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeec-----ccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhh
Confidence 9999999999999999887543310000 000001 123456777776654 45554 78999999999999999
Q ss_pred ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE-----EeecccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-----IMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
..|...|.+++..+++ +.+++++.|+.|..|...+....... .+...+.+++..++ .+++|+.|..+.+-.
T Consensus 242 ~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 242 SCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGRDFTLAICS 317 (691)
T ss_pred hhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecceeeEEEEcc
Confidence 9999999999999987 78889999999999987766442111 12223334443332 333333333333221
Q ss_pred CCC------------------------------------------c--------cccceeeeCcccceEEEEEcCCCCEE
Q 012994 275 SRK------------------------------------------L--------DEAKCVHMGHESAVMDIDYSPTGREF 304 (452)
Q Consensus 275 ~~~------------------------------------------~--------~~~~~~~~~~~~~v~~~~~s~~g~~l 304 (452)
.+. . ............-|.+.+.||+|++|
T Consensus 318 s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~I 397 (691)
T KOG2048|consen 318 SREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLI 397 (691)
T ss_pred ccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEE
Confidence 111 0 01111222334568899999999999
Q ss_pred EEEeCCCeEEEEECCC------------------------------------------------Cce--e-eeeccCCcC
Q 012994 305 VTGSYDRTIRIFQYNG------------------------------------------------GRS--R-EIYHTKRMQ 333 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~------------------------------------------------~~~--~-~~~~~~~~~ 333 (452)
+.+.-. .+++|.+.. ... . .........
T Consensus 398 a~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~ 476 (691)
T KOG2048|consen 398 AISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCP 476 (691)
T ss_pred EEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCC
Confidence 987621 233333321 100 0 001122346
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
.|+.+..||+|+||++.+.+|.|.+|++++.+.-
T Consensus 477 ~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~ 510 (691)
T KOG2048|consen 477 SISRLVVSSDGNYIAAISTRGQIFVYNLETLESH 510 (691)
T ss_pred cceeEEEcCCCCEEEEEeccceEEEEEcccceee
Confidence 7999999999999999999999999999987653
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=5.1e-23 Score=166.00 Aligned_cols=281 Identities=16% Similarity=0.254 Sum_probs=196.2
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCC-CCCCeeEEEecCCeeeeeec-------CCCCeEEEeC
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDN-SSEPLAVYVWKNSFWAVDHQ-------WEGDLFATAG 182 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 182 (452)
-...+.|+|||..|++-+.|..+++|++...-.......... .............+...+|- |+..++++..
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 345689999999999999999999999975433222111111 11222223333445544443 5667777776
Q ss_pred C--eEEEEeCCCCCcceeccc--CC---CceEEEEECCCCCcEEEEEecCCeEEEEEc-cCCCCceE--------EEeec
Q 012994 183 A--QVDIWNHNRSQPINSFQW--GT---DTVISVRFNPAEPNVLATTASDRSITLYDL-RMSSPARK--------VIMRT 246 (452)
Q Consensus 183 ~--~i~i~d~~~~~~~~~~~~--~~---~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~--------~~~~~ 246 (452)
. -|++||.-+++....+.. |. ....+++|+|+| ..|++| ....|++||+ +.+..... +...+
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 4 499999999998777654 22 245689999999 455544 5789999999 44432221 12244
Q ss_pred ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcee-
Q 012994 247 KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSR- 324 (452)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~- 324 (452)
-+.+++++|.....+++++....+-+|.-.... +...+.+|.+.|+.++|.++|+.|++|+. |-.|..||++.-...
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~-pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR-PLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCC-ceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 567899999999999999988887777665544 44455599999999999999999999985 678999999865433
Q ss_pred eeeccCCcCcEEEE--EEcCCCCEEEEeeCCCcEEEeeccc-ccccccCChhhhhhhHHHHHHHHhhccCccccccccCC
Q 012994 325 EIYHTKRMQRVFCV--KFSCDASYVISGSDDTNLRLWKAKA-SEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHR 401 (452)
Q Consensus 325 ~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (452)
..+..+....-..+ ...|++++|++|+.||.|++||++. |.....+. .+...++.++.||
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-----------------~~sd~vNgvslnP 350 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-----------------NYSDTVNGVSLNP 350 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-----------------cccccccceecCc
Confidence 22322221122333 4468999999999999999999987 55443332 4567789999999
Q ss_pred CCChhhHHHH
Q 012994 402 HLPKPIYKAA 411 (452)
Q Consensus 402 ~~p~~~~~~~ 411 (452)
.+|.+....+
T Consensus 351 ~mpilatssG 360 (406)
T KOG2919|consen 351 IMPILATSSG 360 (406)
T ss_pred ccceeeeccC
Confidence 9996655444
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=2.8e-23 Score=182.02 Aligned_cols=118 Identities=16% Similarity=0.349 Sum_probs=100.6
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCc------cccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKL------DEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+..+.|.|.+...+++++++|.|.+|.+... ..+...+..|...|+++.|+| -...|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 3456688888888999999999999987643 234556778999999999999 456899999999999999999
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
++....+.. |.+.|.+++|||||+.+++.+.||+|++|+..+++.
T Consensus 710 ~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 710 AKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhhheecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 988777654 458899999999999999999999999999877654
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=5.1e-24 Score=175.10 Aligned_cols=267 Identities=15% Similarity=0.254 Sum_probs=189.4
Q ss_pred ecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC
Q 012994 106 SGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (452)
..|.+.++.+.-++- ..+.++-+..|.|.||++...-.. . .+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~---------------l--------------------~~~ 192 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNA---------------L--------------------SEP 192 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhh---------------h--------------------cCc
Confidence 357788888877774 446677788999999998533110 0 000
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC----ceEEEeecccceEEEccCCCc
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP----ARKVIMRTKSNSISWNPMEPM 259 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 259 (452)
.+.+-+ ...+++.++.+|...-..++|+|.....|++|..-+.|++|...++.- .....+...+..+.|+|....
T Consensus 193 ~~~~~~-s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 193 GLEVKD-SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred cccccc-cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc
Confidence 000001 345678889999999999999996555688888889999999877542 112225567788999999999
Q ss_pred eEEeecCCCeEEEEeCCCcc-ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceeeeeccCCcCcE
Q 012994 260 NFTAANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG---RSREIYHTKRMQRV 335 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v 335 (452)
+|++++.|+.|++||+|... ........|.+.|+.|.|+.+..+||+|+.||+++|||++.- +++..+. .|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCe
Confidence 99999999999999999873 333444689999999999998889999999999999999864 3444554 455899
Q ss_pred EEEEEcCC-CCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHH-HHhhcc--CccccccccCCCCChhhHHHH
Q 012994 336 FCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAV-KNRYKH--LPEIKRIVRHRHLPKPIYKAA 411 (452)
Q Consensus 336 ~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~p~~~~~~~ 411 (452)
+++.|+|. ...|+++|.|.+|.|||+................ +.... +=.|-| ..++..+.||+..|.++.+..
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~--L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG--LQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc--hhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 99999994 5578888999999999986543311111000000 00000 112334 457889999999998776543
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=9.2e-23 Score=179.84 Aligned_cols=276 Identities=16% Similarity=0.234 Sum_probs=212.2
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (452)
.|..++|-||| ..|+.+. +..+.+||.+.|..+.++++|...|+|++|+.||+.+++|+.|..|.+|+..
T Consensus 14 ci~d~afkPDG-sqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-------- 83 (1081)
T KOG1538|consen 14 CINDIAFKPDG-TQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-------- 83 (1081)
T ss_pred chheeEECCCC-ceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc--------
Confidence 89999999999 5555444 3579999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC
Q 012994 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (452)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 226 (452)
.+....+.+...+.++.|+|-...+++++ .+.-+|.......... + ....+.+++|..+| .+++.|-.||
T Consensus 84 ------lEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-k-ss~R~~~CsWtnDG-qylalG~~nG 154 (1081)
T KOG1538|consen 84 ------LEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-K-SSSRIICCSWTNDG-QYLALGMFNG 154 (1081)
T ss_pred ------ccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-h-hheeEEEeeecCCC-cEEEEeccCc
Confidence 34455677888999999999999999888 7888998765433221 1 24678899999988 7999999999
Q ss_pred eEEEEEccCCCCceEEEe----ecccceEEEccCCC----ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 227 SITLYDLRMSSPARKVIM----RTKSNSISWNPMEP----MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
+|.+-+-.. +....+.- ..++-+++|+|... ..+++..-..++.+|.+........ ..-.-...|+.+.
T Consensus 155 TIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~--r~L~FdP~CisYf 231 (1081)
T KOG1538|consen 155 TISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD--RALNFDPCCISYF 231 (1081)
T ss_pred eEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc--ccCCCCchhheec
Confidence 999886433 33333332 34566889988754 3466666667777776654211110 0112245688999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 299 PTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
++|.+++.|+.|+.+.+|.-. |-.+.+... ...+|+.++..|++++++.|+.||+|..|++-....-
T Consensus 232 ~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH 298 (1081)
T KOG1538|consen 232 TNGEYILLGGSDKQLSLFTRD-GVRLGTVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVH 298 (1081)
T ss_pred cCCcEEEEccCCCceEEEeec-CeEEeeccc-cceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhh
Confidence 999999999999999999654 444444433 4479999999999999999999999999998765443
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=7.2e-23 Score=181.07 Aligned_cols=329 Identities=15% Similarity=0.204 Sum_probs=226.3
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---------------------------------------
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--------------------------------------- 100 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--------------------------------------- 100 (452)
..+.||.+.|+++.|+|.+ ..|++++.|.++.+|...+..
T Consensus 261 all~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 3456999999999999998 889999999999999754210
Q ss_pred -------------eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCee
Q 012994 101 -------------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (452)
Q Consensus 101 -------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
+...+.||...|.+++|.|.|.+|++.|.|-+-+++-.- ++...- .+......+...+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~w-------HEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEW-------HEIARPQIHGYDLT 411 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccce-------eeecccccccccce
Confidence 011234789999999999999999999999999998654 111100 01111112233444
Q ss_pred eeeecCCCCeEEEeCC--eEEEEeCCC-------------------------------------------C---------
Q 012994 168 AVDHQWEGDLFATAGA--QVDIWNHNR-------------------------------------------S--------- 193 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~~--~i~i~d~~~-------------------------------------------~--------- 193 (452)
++++-+....++++.. .+++|+... +
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 4444443333333321 233333210 0
Q ss_pred ------------------------CcceecccCCCceEEEEECCCCCcEEEEEecC-----CeEEEEEccCCCCceEEE-
Q 012994 194 ------------------------QPINSFQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDLRMSSPARKVI- 243 (452)
Q Consensus 194 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~- 243 (452)
-.+..+.+|...|.+++.+|++ +++++++.. ..|++|+..+....+.+.
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~ 570 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEG 570 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecc
Confidence 0123455788899999999988 899988764 359999998888777555
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee---eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV---HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+.-.++.+.|+|++.+ +++.+.|....+|........... ...|..-|.++.|+|++.+++|+|.|.+|++|....
T Consensus 571 HsLTVT~l~FSpdg~~-LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRY-LLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred cceEEEEEEECCCCcE-EEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 4456789999999987 777889999999987554332222 558999999999999999999999999999999988
Q ss_pred C--ceeee-eccCCcCcEEEEEEcC-C----CCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCc
Q 012994 321 G--RSREI-YHTKRMQRVFCVKFSC-D----ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLP 392 (452)
Q Consensus 321 ~--~~~~~-~~~~~~~~v~~~~~s~-~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (452)
. +.+.. ....+...|++++|.| + +..++.|-..|.|.+|....-....+. ....+...+.....+..
T Consensus 650 ~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 724 (764)
T KOG1063|consen 650 LRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTV-----GTFNLDTRLCATIGPDS 724 (764)
T ss_pred chhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccc-----eeeeeccccccccChHH
Confidence 7 43333 2234457899999988 2 236788889999999996522211111 11111222334457788
Q ss_pred cccccccCCCCC
Q 012994 393 EIKRIVRHRHLP 404 (452)
Q Consensus 393 ~~~~~~~~~~~p 404 (452)
.|++++|.|.-.
T Consensus 725 aV~rl~w~p~~~ 736 (764)
T KOG1063|consen 725 AVNRLLWRPTCS 736 (764)
T ss_pred hhheeEeccccc
Confidence 899999988743
No 147
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=6.6e-23 Score=181.36 Aligned_cols=247 Identities=20% Similarity=0.292 Sum_probs=194.7
Q ss_pred HHHhhhhhcccccc--ccccccccEEE-EEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCe
Q 012994 47 AAKLEKIFARPFIG--ALDGHRDGISC-MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (452)
Q Consensus 47 ~~~~~~~~~~~~~~--~l~~h~~~V~~-~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 123 (452)
.+++|.-....++. .+.+|.+-|.+ ++|.+.....+++|+.|++|.+|......++..+.+|.+.|.++....++.
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~- 114 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT- 114 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-
Confidence 35667665555543 56889999888 888864335699999999999999999999999999999999999887776
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~ 201 (452)
++|||.|.++++|-..... .....|...|+++..-|++ .+++++ ..|++|.- ++.++.+.+
T Consensus 115 ~iSgSWD~TakvW~~~~l~--------------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g 177 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRIGELV--------------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG 177 (745)
T ss_pred eEecccccceEEecchhhh--------------cccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc
Confidence 9999999999999875331 2255677889999988888 556655 46999976 778999999
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE-EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE 280 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 280 (452)
|.+.|+.+++.+++ .|++++.||.|++|++. +..+... .+...+.+++...+ ...++++++|+++++|+.. .
T Consensus 178 HtD~VRgL~vl~~~--~flScsNDg~Ir~w~~~-ge~l~~~~ghtn~vYsis~~~~-~~~Ivs~gEDrtlriW~~~---e 250 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDS--HFLSCSNDGSIRLWDLD-GEVLLEMHGHTNFVYSISMALS-DGLIVSTGEDRTLRIWKKD---E 250 (745)
T ss_pred chhheeeeEEecCC--CeEeecCCceEEEEecc-CceeeeeeccceEEEEEEecCC-CCeEEEecCCceEEEeecC---c
Confidence 99999999999875 47899999999999994 4444443 34455566664444 4458999999999999987 3
Q ss_pred cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 281 AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 281 ~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
..+...-....|+++.+-++|. +++|+.||.|+||...
T Consensus 251 ~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 251 CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 3333333445789998888876 6778889999999876
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=1.6e-22 Score=168.08 Aligned_cols=300 Identities=16% Similarity=0.258 Sum_probs=223.5
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---------eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
..+|..+.|.+...+.|+||+.|..|++|.+..+. .+..+..|...|+++.|+|+|..||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45899999999875699999999999999876432 244567899999999999999999999999999999
Q ss_pred eCCCCCCCCCCC-CCCCC---CCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 137 NVPVATLTDSDD-STDNS---SEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 137 d~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
-...-....... ..... ........+...+..++|++++.+++++. ..+++||+..++....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 876422210000 00000 01112233557889999999999999987 4699999999999999999999999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--------------------e----ecccceEEEccCCCceEEeecC
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVI--------------------M----RTKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------~----~~~~~~~~~~~~~~~~~~~~~~ 266 (452)
|.|-+ .++++-+.|...+.+++...+.+.... + ..-...++|+|++..++.-++.
T Consensus 173 wDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 173 WDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred cchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 99988 688888888877777765544333221 1 1112456788888765532211
Q ss_pred --------CCeEEEEeCCCccccceeeeCcccceEEEEEcCC------------------CCEEEEEeCCCeEEEEECCC
Q 012994 267 --------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT------------------GREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 267 --------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~------------------g~~l~s~~~dg~i~iwd~~~ 320 (452)
-+..|+|+-.....+...+.....+...+.|+|- +-.+|.++ ...|+|||.++
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 2355778777777776666666666666666651 22345555 45699999999
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
..++.....-|-..|+.++|++||.+|+..+.||...+-.++..++-
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 88888887888889999999999999999999999998888776653
No 149
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-23 Score=181.42 Aligned_cols=265 Identities=22% Similarity=0.325 Sum_probs=195.1
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC--------CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~--------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
++.-|.+.|+.++|+|.. ..|++++.||.+.+|+++. .+++.+|.+|.++|.|+++.+++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCC-CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 778899999999999997 8999999999999999932 2568889999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
|+.|++.... .+... + ........+.+|.+.+..++++
T Consensus 368 I~~w~~p~n~------------dp~ds----------------------------~--dp~vl~~~l~Ghtdavw~l~~s 405 (577)
T KOG0642|consen 368 IRCWNLPPNQ------------DPDDS----------------------------Y--DPSVLSGTLLGHTDAVWLLALS 405 (577)
T ss_pred eeeeccCCCC------------Ccccc----------------------------c--Ccchhccceeccccceeeeeec
Confidence 9999986221 00000 0 0112345677899999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCC--ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee----
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSP--ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---- 286 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---- 286 (452)
+.. +.|++++.||++++|+.....+ ...........++.+........++....+.-.+++............
T Consensus 406 ~~~-~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 406 STK-DRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred ccc-cceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 977 6788999999999999877666 111222333445555444433333333333333333322211111110
Q ss_pred --CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 287 --GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 287 --~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
.....+..+.++|.+.+.+++..|+.|+++|..++..+.....+. ..++++++.|+|-+|++++.||.+++|.+...
T Consensus 485 ~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~-~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK-DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccccCccceEEecCCCCeeEecccCCceecccccccccchheeecc-ceecceeecCCCceEEeecCCceeehhhccch
Confidence 112347778899999999999999999999999999887765444 78999999999999999999999999999776
Q ss_pred cccccC
Q 012994 365 EQLGVL 370 (452)
Q Consensus 365 ~~~~~~ 370 (452)
.++...
T Consensus 564 ~~~~es 569 (577)
T KOG0642|consen 564 TCVLES 569 (577)
T ss_pred heeecc
Confidence 665443
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6e-22 Score=180.84 Aligned_cols=243 Identities=14% Similarity=0.252 Sum_probs=191.7
Q ss_pred ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C
Q 012994 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
.+|...-+.|+|.|+|..|++|+.||.|++|+..+.. ..+.........+.+++...+ .|+++. +
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-----------e~P~ti~~~g~~v~~ia~~s~--~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-----------EEPETIDISGELVSSIACYSN--HFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-----------cCCchhhccCceeEEEeeccc--ceEEeeccc
Confidence 3688899999999999999999999999999986552 111111113334444444333 555554 6
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEE
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (452)
.|.+|.+.+++.-..+....-++.+++++.+| .+++.|+.|-.|++.++........+. +..++.++.++|.+.. ++
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f-LA 154 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF-LA 154 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE-EE
Confidence 79999999988776666667889999999988 799999999999999998887776665 5678899999998875 88
Q ss_pred eecCCCeEEEEeCCCccccceee-------eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc-Cc
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVH-------MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM-QR 334 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~-------~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~ 334 (452)
+.+.+|.+++||+.........- ......+..++|+|+|..++..+.|+.|++|+..+......+...+. ..
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc
Confidence 88899999999998654322111 11245678899999988888888899999999999888777755543 34
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 335 VFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+.+++|+|+|.|||+++.||.|.|||+++
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999999999999999999996
No 151
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2e-21 Score=149.19 Aligned_cols=243 Identities=20% Similarity=0.332 Sum_probs=187.9
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-----EEEeecCCCCeeEEEEcc----CCCeEEEEeC-C
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRGLTVST----DGRILVSCGT-D 130 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~----~~~~l~s~~~-d 130 (452)
.-+.|.+.|+|.+|+|+| .++++|+.|.+|++.-++.... -..+.-|.+.|..++|.. .+..|++++. |
T Consensus 84 r~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 84 RNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 346799999999999999 9999999999999987654322 234667999999999965 3456777654 5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc-------
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW------- 201 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~------- 201 (452)
..|.+-|...++.... ...+.+.+. .-+++++.++++++ .+|++||++-...+..+..
T Consensus 163 c~iy~tdc~~g~~~~a------------~sghtghil-alyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHA------------LSGHTGHIL-ALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred ceEEEeecCCCCccee------------ecCCcccEE-EEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 5666667666633222 222222332 33567888999887 4699999998887766543
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCc--
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL-- 278 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-- 278 (452)
....|.++++.|.| ++|++|-.|....+||++.++.++.+.. ...+.++.|+|.. .++++++.|..|++-|++..
T Consensus 230 essavaav~vdpsg-rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a-~yllt~syd~~ikltdlqgdla 307 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIKLTDLQGDLA 307 (350)
T ss_pred ccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-eEEEEecccceEEEeecccchh
Confidence 23579999999998 8999999999999999999999988865 4567899999865 45889999999999998753
Q ss_pred -cccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 279 -DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 279 -~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+.+..+...|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 308 ~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 308 HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 23334455788889999999998889999999999999764
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.4e-23 Score=172.66 Aligned_cols=208 Identities=18% Similarity=0.264 Sum_probs=175.2
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~ 140 (452)
-.||++.|.+|+|+..-.+.||+||.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 4689999999999998778999999999999999999999999999999999999999 667999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCC-CcceecccCCCceEEEEECCCCC
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
. ..........+.+-.+.|.+........+ |.++-+|++.. +++..++.|.+.|.++++++..+
T Consensus 319 ~------------~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p 386 (463)
T KOG0270|consen 319 P------------SNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP 386 (463)
T ss_pred c------------cccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC
Confidence 3 34444556677888888888765444333 88999999876 89999999999999999999999
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
.++++++.|+.|++|++....+....... +...+.++.|+-...++.|+..+.+++||+.+....
T Consensus 387 ~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 387 GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999999999999998766553332221 125677888999999999999999999998765433
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=3.5e-23 Score=176.48 Aligned_cols=250 Identities=16% Similarity=0.263 Sum_probs=201.2
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--Ce
Q 012994 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQ 184 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 184 (452)
.|..-|.++..+...++++||+. |.|+|||+..... ..+...+.+....+-+.++...+||+.+++++ .+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------KSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------CCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 48888999999999999999986 7899999965521 11233344455677888999999999999998 47
Q ss_pred EEEEeCCCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceE
Q 012994 185 VDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNF 261 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 261 (452)
+.|||+....+....+. ..-....++.+|+. ++.+++..||.|.|||+.+...++.+.. .....++..+++|.. +
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtk-l 566 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTK-L 566 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCce-e
Confidence 99999988765443333 23456778999988 7889999999999999999998888875 456678888888765 8
Q ss_pred EeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEc
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 341 (452)
.+|+-|++++.||++...++... ...+.|.++.++|++.+|+.|-.++.+.|.......... ...|..-|.++.|.
T Consensus 567 WTGGlDntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq--lhlheScVLSlKFa 642 (705)
T KOG0639|consen 567 WTGGLDNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ--LHLHESCVLSLKFA 642 (705)
T ss_pred ecCCCccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcccee--ecccccEEEEEEec
Confidence 89999999999999987766543 345679999999999999999999999888776544332 23455789999999
Q ss_pred CCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 342 CDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 342 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+.|+++++.+.|..+..|.+.-|..+...
T Consensus 643 ~cGkwfvStGkDnlLnawrtPyGasiFqs 671 (705)
T KOG0639|consen 643 YCGKWFVSTGKDNLLNAWRTPYGASIFQS 671 (705)
T ss_pred ccCceeeecCchhhhhhccCccccceeec
Confidence 99999999999999999999988776544
No 154
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.9e-22 Score=156.37 Aligned_cols=232 Identities=16% Similarity=0.244 Sum_probs=172.2
Q ss_pred hhhHhhhhHHHhhhhh-c--cccccccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCe
Q 012994 39 VEYVRALTAAKLEKIF-A--RPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAV 112 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~-~--~~~~~~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v 112 (452)
++.......+++..+- . ..++.+|.||.++|..++|.. ....+||+++.||.|.||.-.+++ .......|...|
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SV 105 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASV 105 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccc
Confidence 3334444445544442 1 257889999999999999954 433999999999999999988774 345567899999
Q ss_pred eEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC---C-----------C
Q 012994 113 RGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE---G-----------D 176 (452)
Q Consensus 113 ~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~ 176 (452)
++++|.|. |-.|++++.||.|.|.+.+....- ........+.-.++++++.|. | +
T Consensus 106 NsV~wapheygl~LacasSDG~vsvl~~~~~g~w---------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 106 NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW---------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred eeecccccccceEEEEeeCCCcEEEEEEcCCCCc---------cchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 99999984 568999999999999998765111 122333455667778888775 3 3
Q ss_pred eEEEeC--CeEEEEeCCCCC--cceecccCCCceEEEEECCCC---CcEEEEEecCCeEEEEEccCCCCceEEEeecccc
Q 012994 177 LFATAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAE---PNVLATTASDRSITLYDLRMSSPARKVIMRTKSN 249 (452)
Q Consensus 177 ~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (452)
.|+++| ..|+||+...+. .-..+.+|.+-|+.++|.|.- ...+++++.||++.||..+......+.
T Consensus 177 rlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~------- 249 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK------- 249 (299)
T ss_pred eeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccc-------
Confidence 577777 469999998764 335588999999999999964 357999999999999986522111111
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
..+......+..+.||+.|+.|+.++.|+.|.+|.-+
T Consensus 250 ---------------------------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 250 ---------------------------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---------------------------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1122345678999999999999999999999999754
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=2.1e-21 Score=156.78 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=209.3
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc------------eEEEee-cCCCCeeEEEEc-------cCCCeEEEEe
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------------TVCQYS-GHQGAVRGLTVS-------TDGRILVSCG 128 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~------------~~~~~~-~h~~~v~~l~~~-------~~~~~l~s~~ 128 (452)
...+.|+||| ..|++-+.|..+.+|++...- ....++ .....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 4467899999 999999999999999975210 011111 123567777885 5778999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEeC-CCCCcc--eec-----
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNH-NRSQPI--NSF----- 199 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~-~~~~~~--~~~----- 199 (452)
.|.-|++||.-++++..++..-....+ -....+++|+|||..+.++.. .|+++|+ +.+... ...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de-------~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDE-------YTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHh-------hhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence 999999999999987655433222111 124468999999999999985 6999999 444322 111
Q ss_pred ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
.+..+.|.+++|+|.....+++|+...++-||.-....++..+. +.+.++.+.|.+++..++..+-.+..|..||++..
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 22367889999999988899999999999999887777777665 45678999999999998888888999999999998
Q ss_pred cccceeeeCccc-ceE--EEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 279 DEAKCVHMGHES-AVM--DIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 279 ~~~~~~~~~~~~-~v~--~~~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
..+...+..|.. .-. -....|+|++|++|+.||.|++||+.+ +.....+. .+...++.++++|--.++++++..
T Consensus 284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCcccceeeeccCc
Confidence 887777666655 222 345678999999999999999999998 55444443 344789999999998888877654
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.7e-22 Score=165.96 Aligned_cols=269 Identities=12% Similarity=0.142 Sum_probs=207.3
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeCC--eE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAGA--QV 185 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~i 185 (452)
.+.|++|.|+|....|++++.||+++||.++.... ...........++.+..|.|+|. .+++++. -+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N----------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN----------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC----------hhheeeeeccCccceeeecCCCceEEEecccceEE
Confidence 36899999999999999999999999999975532 23334444567888999999999 6666663 48
Q ss_pred EEEeCCCCCcce--ecccC-CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEE
Q 012994 186 DIWNHNRSQPIN--SFQWG-TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 186 ~i~d~~~~~~~~--~~~~~-~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (452)
..||+.+.+... ...++ ...+....+++++ ++|+..+..|.|.+.-..++..+..+...+.+..++|+.++. .++
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk-~l~ 360 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK-ELL 360 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCc-EEE
Confidence 999998876443 23332 3457778889988 799999999999999999999999999999999999998885 466
Q ss_pred eecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ceeeeeccCCcCcEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG------RSREIYHTKRMQRVF 336 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~ 336 (452)
+.+.+|.|++||++.............-.-+++|.|++|.|||+|+..|.|.|||.++. +++..+..- ...|+
T Consensus 361 ~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~It 439 (514)
T KOG2055|consen 361 ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAIT 439 (514)
T ss_pred EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeee
Confidence 66777899999999875444443332334567888999999999999999999997642 223333222 25799
Q ss_pred EEEEcCCCCEEEEeeC--CCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 337 CVKFSCDASYVISGSD--DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
++.|++|+++|+.++. +..+++-.+.+......++... ...+.+++++|.|+--
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--------------~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--------------TKVGHVTCMAFSPNSG 495 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--------------CcccceEEEEecCCCc
Confidence 9999999999887764 6789999998888777766542 3355678899988643
No 157
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.9e-24 Score=187.98 Aligned_cols=245 Identities=19% Similarity=0.373 Sum_probs=203.5
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
.+++.+..+-.+++||.. .+..|...|.++..-..++.+++|+.|..+.+|.+.... .....
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------------~i~S~ 66 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------------AITSL 66 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc------------hhhee
Confidence 344555566677788753 344688888888887788899999999999999986542 23345
Q ss_pred EEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC
Q 012994 160 YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 237 (452)
..+...|.++.|+....+++++. |.|++||+.+.+.++.+.+|...+.++.|+|.+ .+++.|+.|+.+++||++...
T Consensus 67 ~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccC
Confidence 77888999999999999998886 689999999999999999999999999999998 688999999999999998665
Q ss_pred CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 238 PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
+...+ .+|...+..+.|+|+|++++.|+.|..++|||
T Consensus 146 c~~~~-------------------------------------------~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 146 CSHTY-------------------------------------------KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred ceeee-------------------------------------------cCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 55433 26888899999999999999999999999999
Q ss_pred CCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCcccccc
Q 012994 318 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRI 397 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (452)
+..|+....|..+. +.+..+.|+|..-++++|+.|+++++||+++.+.+....+. ...+.+.
T Consensus 183 ~~agk~~~ef~~~e-~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----------------~~~v~~~ 244 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHE-GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----------------TDGVRSL 244 (825)
T ss_pred cccccccccccccc-ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----------------cCCceee
Confidence 99999988886544 78999999999999999999999999999998888766532 4455666
Q ss_pred ccCCCCC
Q 012994 398 VRHRHLP 404 (452)
Q Consensus 398 ~~~~~~p 404 (452)
+|.|...
T Consensus 245 ~fn~~~~ 251 (825)
T KOG0267|consen 245 AFNPDGK 251 (825)
T ss_pred eecCCce
Confidence 6666654
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=2.7e-23 Score=167.96 Aligned_cols=281 Identities=18% Similarity=0.293 Sum_probs=192.0
Q ss_pred ccccccCCCC-CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc
Q 012994 22 QRVYHNYDPN-LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR 100 (452)
Q Consensus 22 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~ 100 (452)
....-.|+.. -+|+..... .+..+++.++....+...+.||.+.|+.+.|+|+.+++++++|.|.+|++|++++..
T Consensus 93 ytcsw~yd~~~~~p~la~~G---~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~ 169 (385)
T KOG1034|consen 93 YTCSWSYDSNTGNPFLAAGG---YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV 169 (385)
T ss_pred EEEEEEecCCCCCeeEEeec---ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe
Confidence 3333444444 355554444 345567778888999999999999999999999988899999999999999999999
Q ss_pred eEEEe---ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCe
Q 012994 101 TVCQY---SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL 177 (452)
Q Consensus 101 ~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (452)
++..+ .+|.+.|.++.|+++|.+|++|+.|.++++|++...+....++.. ..|++++..
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s------------------~~~~~~~t~ 231 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS------------------ITYSPNKTT 231 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh------------------cccCCCCcc
Confidence 98886 579999999999999999999999999999999865443322211 112222211
Q ss_pred EEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc-CCCCceEEEeecccceEEEccC
Q 012994 178 FATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR-MSSPARKVIMRTKSNSISWNPM 256 (452)
Q Consensus 178 ~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~ 256 (452)
.-.-.-...+.+. .+-..|...|-|+.|.- +++++-+-++.|..|..- -.+.+.....+.....+
T Consensus 232 ~pfpt~~~~fp~f------st~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti----- 297 (385)
T KOG1034|consen 232 RPFPTPKTHFPDF------STTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI----- 297 (385)
T ss_pred CcCCccccccccc------cccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceee-----
Confidence 0000000111111 12234788888999874 688888889999999872 22222211111100000
Q ss_pred CCceEEeecCCCeEEEEeCCCccccceeeeCcccce--EEEEEcCCCCEEEEEeCCCeEEEEECCCCceee---eeccCC
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV--MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE---IYHTKR 331 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~ 331 (452)
+.-++ -....| ...+|.|-++.||.|...|.|.+||++...+.. ..+...
T Consensus 298 -------------~~~~~------------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~ 352 (385)
T KOG1034|consen 298 -------------LGEFD------------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS 352 (385)
T ss_pred -------------eeEec------------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc
Confidence 00011 112223 345677788999999999999999999766532 223333
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
...|...+||.||.+|+..++|++|.-||.-
T Consensus 353 ~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 353 GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 4679999999999999999999999999864
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.2e-23 Score=192.82 Aligned_cols=281 Identities=15% Similarity=0.197 Sum_probs=207.9
Q ss_pred EEEeCCCCcceEEEee----------CCCcEEEEeCCC--Cc----eEEEeecCCCCeeEEEEccCCCe----EEEEeCC
Q 012994 71 CMAKNPNYLKGFFSGS----------MDGDIRLWDIAN--RR----TVCQYSGHQGAVRGLTVSTDGRI----LVSCGTD 130 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~--~~----~~~~~~~h~~~v~~l~~~~~~~~----l~s~~~d 130 (452)
.++|+|.+..++++|. .+.++-||.+.. .. .+..+. -...-+.++|.+.+.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 5789998855777653 345566665432 22 233333 3457889999987665 8889999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
|.|.+||...-.. -.....+.....|.+.|..+.
T Consensus 90 G~I~ly~p~~~~~----------------------------------------------~~~~~~la~~~~h~G~V~gLD 123 (1049)
T KOG0307|consen 90 GNIVLYDPASIIA----------------------------------------------NASEEVLATKSKHTGPVLGLD 123 (1049)
T ss_pred CceEEecchhhcc----------------------------------------------CcchHHHhhhcccCCceeeee
Confidence 9999999854200 012234566677999999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEE---EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKV---IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG 287 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 287 (452)
|++..+++|++|+.||.|.|||+...+..... .....+.+++|+..-..++++++.+|.+.+||++..+........
T Consensus 124 fN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 124 FNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred ccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence 99999899999999999999999876544443 245678899999999999999999999999999987655544322
Q ss_pred c-ccceEEEEEcCCC-CEEEEEeCCC---eEEEEECCCCceeeeeccCCcCcEEEEEEcCCC-CEEEEeeCCCcEEEeec
Q 012994 288 H-ESAVMDIDYSPTG-REFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKA 361 (452)
Q Consensus 288 ~-~~~v~~~~~s~~g-~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~ 361 (452)
. ...+..++|+|+. ..|++++.|. .|.+||++.-........+|...|.++.|++.+ .+|++++.|+.|.+|+.
T Consensus 204 ~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecC
Confidence 2 2357899999975 3466665543 599999987554433346677899999999955 89999999999999999
Q ss_pred ccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHHH
Q 012994 362 KASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRR 415 (452)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 415 (452)
++|+.+..+.... .=+..+.|.|..|..+..+.-+.+
T Consensus 284 ~tgEvl~~~p~~~-----------------nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 284 NTGEVLGELPAQG-----------------NWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred CCceEeeecCCCC-----------------cceeeeeecCCCcchhhhheeccc
Confidence 9999998886432 224568888988877766654433
No 160
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=156.80 Aligned_cols=288 Identities=15% Similarity=0.194 Sum_probs=191.4
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
...|++|.+.|+|+.|..++ +|.+|...|.|++|++.+.+....+. .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred eeEeccccchheehhhccch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 34678999999999999884 59999999999999999998888887 67788999999987 5688999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC----eEEEeCC---eEEEEeCCCCCcceec----ccCCCce
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD----LFATAGA---QVDIWNHNRSQPINSF----QWGTDTV 206 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~i~i~d~~~~~~~~~~----~~~~~~i 206 (452)
+.....+...... ...-.+...++.++++ .++.-+. .+.+-|......+... ....+.+
T Consensus 84 ia~s~~i~i~Si~----------~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 84 IAYSAFISIHSIV----------VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred ccCcceEEEeeee----------ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCce
Confidence 9764332111100 0000111112222211 1222111 1222232222222111 1124566
Q ss_pred EEEEECCCC--CcEEEEEecCCeEEEEEccCCCCceEE-----------EeecccceEEEccCCCceEEeecCCCeEEEE
Q 012994 207 ISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKV-----------IMRTKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 207 ~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
.+..+.-.. .-++++|.++|.+.+||+.++..+..+ .+..++.++.+.+.-.. =+.++.+..+..|
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~dkl~~~ 232 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGADDKLVMY 232 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCccccceee
Confidence 666643322 235778889999999999987433332 23445566666643332 2334445556666
Q ss_pred eCCCcccc---ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 274 DSRKLDEA---KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 274 d~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.+...... .....-..-.|..+.+-||++.+||++.|+.|+||+.++...+..+..+. +.|++++|+|+..+++++
T Consensus 233 Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs-agvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 233 SLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS-AGVNAVAFSPDCELMAAA 311 (323)
T ss_pred eeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhh-cceeEEEeCCCCchhhhc
Confidence 55432111 11112233468889999999999999999999999999999988876555 889999999999999999
Q ss_pred eCCCcEEEeec
Q 012994 351 SDDTNLRLWKA 361 (452)
Q Consensus 351 ~~dg~i~iw~~ 361 (452)
+.|++|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999986
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.5e-22 Score=177.37 Aligned_cols=278 Identities=19% Similarity=0.203 Sum_probs=198.0
Q ss_pred EEeCC--CCcceEEEeeCCCcEEEEeCCCCce------EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 72 MAKNP--NYLKGFFSGSMDGDIRLWDIANRRT------VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 72 ~~~~~--~~~~~l~tg~~dg~i~iwd~~~~~~------~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
..|++ .....|+.+..||.|.++|...... +..+..|...|..+.|-|....|++++.|.++++||+....+
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55654 3346799999999999999765422 355678999999999999777899999999999999976643
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
.. ...+.+|...+.+++|.|.++..|++|+
T Consensus 135 ~G--------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 135 VG--------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ec--------------------------------------------------ceeecccccccchhhhccCCCcceeecc
Confidence 11 1235678999999999999999999999
Q ss_pred cCCeEEEEEccCCCCc--------------------eEE--------Eeecccc---eEEEccCCCceEEeecCCCeEEE
Q 012994 224 SDRSITLYDLRMSSPA--------------------RKV--------IMRTKSN---SISWNPMEPMNFTAANEDCNCYS 272 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~--------------------~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~ 272 (452)
.||.|.|||++-...- ... .....+. .+.+..|...++.++..|+.|.+
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence 9999999998754310 000 0001111 24455566665666666999999
Q ss_pred EeCCCcccccee-------eeCc---ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--eccCCcCc-EEEEE
Q 012994 273 YDSRKLDEAKCV-------HMGH---ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI--YHTKRMQR-VFCVK 339 (452)
Q Consensus 273 ~d~~~~~~~~~~-------~~~~---~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~-v~~~~ 339 (452)
||+++....... +..| .-.++++.....|.+|++.+.|+.|++|++.+-..... +....... -..-.
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~ 324 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE 324 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee
Confidence 999975432211 1122 33578888888899998888899999999987543322 22211111 12335
Q ss_pred EcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHHH
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRR 415 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 415 (452)
.+||+.+|++|+.|+..++|.+.+.+.--. -..+|..+|..++|.|..-..+.++.++-+
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~----------------~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~ 384 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWVVSSPEAPPA----------------LLLGHTREVTTVRWLPSATTPVATCSDDFR 384 (720)
T ss_pred cCCCCceEeccCCCcceeeeeecCccCChh----------------hhhCcceEEEEEeeccccCCCceeeccCcc
Confidence 689999999999999999999987654221 235889999999998876666666654433
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.2e-21 Score=162.70 Aligned_cols=270 Identities=14% Similarity=0.199 Sum_probs=199.1
Q ss_pred eCCCCceEEEeecCCCCeeEEEEccCC--CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec
Q 012994 95 DIANRRTVCQYSGHQGAVRGLTVSTDG--RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ 172 (452)
Q Consensus 95 d~~~~~~~~~~~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (452)
|+.+......++-+.++|++++|+|.. +.+|+|+.-|.|-+||+..... ..........+..+|.++.|+
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCccccceEec
Confidence 333444445566788999999999943 5889999999999999963211 012334445566789999999
Q ss_pred CCCC---eEEEeCCeEEEEeCCCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce-EE-Eee
Q 012994 173 WEGD---LFATAGAQVDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR-KV-IMR 245 (452)
Q Consensus 173 ~~~~---~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~-~~~ 245 (452)
|... +..+.+|.+++-|++.+..-..+.. ....+.++.|+...+ .++.+..=|.+.+||+++..... .+ .+.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhh
Confidence 8654 2333458999999988765444433 455677788888775 45566666699999999887632 22 245
Q ss_pred cccceEEEccCCCceEEeecCCCeEEEEeCCCccccc---eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC---
Q 012994 246 TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK---CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN--- 319 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~--- 319 (452)
..+..++++|..+.++++++.|++..+||++...... .....|...|.+..|||.|..|+|.+.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~s 402 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCIS 402 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccc
Confidence 5889999999999999999999999999999875433 3445899999999999988779999999999999984
Q ss_pred -CCceeeeeccCC----cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChh
Q 012994 320 -GGRSREIYHTKR----MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 320 -~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 373 (452)
.......+...+ .-......|.|+..++++|-.-..|-|+|-+.++.+..+...
T Consensus 403 a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 403 AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred ccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 222222221111 123456789999999999999999999999999877776543
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.3e-21 Score=157.52 Aligned_cols=306 Identities=11% Similarity=0.119 Sum_probs=219.6
Q ss_pred CeEeEEecCCcccccccccccccccccCCCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcc
Q 012994 1 MKVKVISRSTDEFTRERSQDLQRVYHNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLK 80 (452)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 80 (452)
|++.++..-.-++.+ ........+-.--..|++.+..++...+...+-+|++.+...-+.|.+|..+|+|++||++| +
T Consensus 1 Mnl~L~d~f~~~~PE-el~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r 78 (405)
T KOG1273|consen 1 MNLELLDPFGVEYPE-ELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-R 78 (405)
T ss_pred CcccccccccccChH-hhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-C
Confidence 555555544443333 22222222223344588889999888888999999999999999999999999999999999 9
Q ss_pred eEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 81 GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 81 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
.|+|+|.|..|.+||+..|.+++.+. ..++|+.+.|+|.. +..+.+-.+..-.+-++..+.......... ..
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d--~d---- 151 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD--GD---- 151 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc--cc----
Confidence 99999999999999999999998887 67899999999933 333333344445555554321110000000 00
Q ss_pred EEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCC-CceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 160 YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
.+.......|.+.|+++.+|. |.+.++|..+.+.+..++... ..|..+.++-.+ ..|+.-+.|..|+.|+++.-
T Consensus 152 --ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 152 --LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred --cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehhhh
Confidence 011112235788999999998 579999999999998887765 789999999887 78899999999999998632
Q ss_pred CC-------c--eE---EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc-cceEEEEEcCCCCE
Q 012994 237 SP-------A--RK---VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE-SAVMDIDYSPTGRE 303 (452)
Q Consensus 237 ~~-------~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~ 303 (452)
.. . ++ +.-...-.+++|+.+|.+++++......+++|....+.-.. ++.|.. ....++.|+|-...
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-ILhG~kgE~l~DV~whp~rp~ 307 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-ILHGTKGEELLDVNWHPVRPI 307 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceee-eecCCchhheeecccccceee
Confidence 11 1 11 11122336788999999988888888899999987655444 444444 56788999998888
Q ss_pred EEEEeCCCeEEEEECCC
Q 012994 304 FVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 304 l~s~~~dg~i~iwd~~~ 320 (452)
+++- ..|.|++|....
T Consensus 308 i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 308 IASI-ASGVVYIWAVVQ 323 (405)
T ss_pred eeec-cCCceEEEEeec
Confidence 8877 688999998754
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.9e-21 Score=169.41 Aligned_cols=284 Identities=20% Similarity=0.256 Sum_probs=203.6
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCe--EE
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL--FA 179 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 179 (452)
-..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.++ .++........|.+++|+|.+.. ++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-------------Rcvr~~~~d~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-------------RCVRTVQFDSEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-------------eEEEEEeecceeEEEEecCCCCceeEE
Confidence 3457899999999999999999999999999999999988 45566667778899999987753 33
Q ss_pred Ee-CCeEEEEeCCCCC-------------------------------------cceecccCCCceEEEEECCCCCcEEEE
Q 012994 180 TA-GAQVDIWNHNRSQ-------------------------------------PINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 180 ~~-~~~i~i~d~~~~~-------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
++ +..+.|.+..-|. -+...-.|...|..+.|+..| .+|++
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG-DYlat 538 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG-DYLAT 538 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC-ceEEE
Confidence 33 2334444322110 011223367789999999988 67777
Q ss_pred EecC---CeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE
Q 012994 222 TASD---RSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297 (452)
Q Consensus 222 ~~~d---g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 297 (452)
...+ ..|.|+++........+. ..+.+..+.|+|....+|++. ...+++||+.......... .....|..++.
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT--q~~vRiYdL~kqelvKkL~-tg~kwiS~msi 615 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT--QRSVRIYDLSKQELVKKLL-TGSKWISSMSI 615 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe--ccceEEEehhHHHHHHHHh-cCCeeeeeeee
Confidence 6553 469999998777665553 456778999999999877765 4578899987744333333 45678999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhh
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRK 377 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 377 (452)
+|.|..|+.|+.|+.+..||+.-..........|...+++++|++.-.++++|+.||.+.|+.-.-...+-.- ..
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn-----pl 690 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN-----PL 690 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC-----Cc
Confidence 9999999999999999999998765444444556688999999999999999999999999864322211000 00
Q ss_pred hHHHHHHHHhhccC----ccccccccCCCCChhhHHH
Q 012994 378 HAYHEAVKNRYKHL----PEIKRIVRHRHLPKPIYKA 410 (452)
Q Consensus 378 ~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~ 410 (452)
+- .+....+|. -.|....|||.+|.++...
T Consensus 691 iV---PlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 691 IV---PLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred eE---eeeeccCceeecccceEeecccCCCceEEecC
Confidence 00 001111333 3377888999999887543
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=1.8e-21 Score=171.78 Aligned_cols=272 Identities=17% Similarity=0.259 Sum_probs=205.8
Q ss_pred ccCCCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe
Q 012994 26 HNYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 105 (452)
..++..+.|.+..+.. .+....-+.+...+.++++|+||++-|+|++|+.+| ..+|+|+.|..|.+|+..- +-+..+
T Consensus 14 ci~d~afkPDGsqL~l-AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLIL-AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEE-ecCCEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc-cceeee
Confidence 4456677787776643 445556678888999999999999999999999999 9999999999999998543 223334
Q ss_pred ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C
Q 012994 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
.|...|.||.|+|-...|+||+-. ..-+|...... +........+.+++|..||.+++.+- |
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--------------V~K~kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--------------VSKHKSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--------------HHhhhhheeEEEeeecCCCcEEEEeccCc
Confidence 499999999999988999999874 57788875432 22223345677899999999999885 6
Q ss_pred eEEEEeCCCCCccee--cccCCCceEEEEECCCC----CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCC
Q 012994 184 QVDIWNHNRSQPINS--FQWGTDTVISVRFNPAE----PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPME 257 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (452)
+|.+-+-.....+.. -.+.+.+|.+++|+|.. ...+++.....++.+|.+..............+.++.+.++|
T Consensus 155 TIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NG 234 (1081)
T KOG1538|consen 155 TISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNG 234 (1081)
T ss_pred eEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCC
Confidence 788775443332222 22367899999999964 246788888888888888766555566677788899999999
Q ss_pred CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.+ +..|+.++.+.+|...... .-.......+|+.++..|++++++.|+.||+|..|++.
T Consensus 235 Ey-~LiGGsdk~L~~fTR~Gvr--LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 235 EY-ILLGGSDKQLSLFTRDGVR--LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred cE-EEEccCCCceEEEeecCeE--EeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 87 5566777778877654321 11222356789999999999999999999999999863
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.2e-20 Score=174.76 Aligned_cols=297 Identities=17% Similarity=0.269 Sum_probs=208.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCC---CCeeEEEEcc--CCCeEEEEeCCCcEEEEeCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ---GAVRGLTVST--DGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~ 140 (452)
...-..+.|+|-. ..++++...-.|+|||.+.++.+..|..+. ..|+.+.+.. |..++++|+.||.|+||+-..
T Consensus 1064 ~~~pk~~~~hpf~-p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFE-PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCC-ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3456677888887 778888878899999999999887776443 5689999876 556899999999999997543
Q ss_pred CCC-CCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC-CCceEEEEECCCCC
Q 012994 141 ATL-TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG-TDTVISVRFNPAEP 216 (452)
Q Consensus 141 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~ 216 (452)
... ...+...-........ ...+.-..++|..+...++++| ..|+|||......+..+... ...++++.-+..++
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~-~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLP-GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCc-cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 321 0000000000000000 0011114456666555555555 46999999998887777653 45677777666666
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEE----Eee--cccceEEEccCCCceEEeecCCCeEEEEeCCCc-cccceeeeCcc
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKV----IMR--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL-DEAKCVHMGHE 289 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~ 289 (452)
+++++|..||.|++||.+....-... .+. ..+..+.+.+.|-.-+++|+.+|.|++||++.. .........|.
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 89999999999999999876542211 122 236778888877778999999999999999984 22222222222
Q ss_pred --c-ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----eeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 290 --S-AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR-----EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 290 --~-~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
+ ..+++..+++...+|+|+. +.|+||++...... ..+.....+.+.|++|+|..-++++|+.|..|.||..
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 3 5999999999999999998 99999999754332 1223334567899999999999999999999999987
Q ss_pred cccc
Q 012994 362 KASE 365 (452)
Q Consensus 362 ~~~~ 365 (452)
...+
T Consensus 1381 ~k~~ 1384 (1387)
T KOG1517|consen 1381 EKPR 1384 (1387)
T ss_pred CCcC
Confidence 6543
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.6e-20 Score=149.33 Aligned_cols=254 Identities=17% Similarity=0.226 Sum_probs=190.6
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCC-------CcEEEEeCCCC---------ceEEEee-cCCCCeeEEEEccCCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD-------GDIRLWDIANR---------RTVCQYS-GHQGAVRGLTVSTDGR 122 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~d-------g~i~iwd~~~~---------~~~~~~~-~h~~~v~~l~~~~~~~ 122 (452)
..|..|.+.|..++-+|...+.|+|+..+ ..+-||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45677899999999999886777776542 24779988643 2344443 4556899999999999
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccC
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~ 202 (452)
.|++.. |..|.+|++.....+ ..... ...-..+
T Consensus 137 klasm~-dn~i~l~~l~ess~~------------vaev~----------------------------------ss~s~e~ 169 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKI------------VAEVL----------------------------------SSESAEM 169 (370)
T ss_pred eeEEec-cCceEEEEcccCcch------------heeec----------------------------------ccccccc
Confidence 998876 789999999766321 00000 0000113
Q ss_pred CCceEEEEECCC-CCcEEEEEecCCeEEEEEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCcc
Q 012994 203 TDTVISVRFNPA-EPNVLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD 279 (452)
Q Consensus 203 ~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 279 (452)
....++-+|+|. +.+.++ ...|+++..||+++......+. +...+..+.|+|+...++++++.|+.+++||.++..
T Consensus 170 ~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk 248 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK 248 (370)
T ss_pred cceecccccCCCCccceEE-EeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence 556777889993 335554 4458999999999888776665 445678999999999999999999999999999999
Q ss_pred ccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc-----------------------------eeeeecc
Q 012994 280 EAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGR-----------------------------SREIYHT 329 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~~~ 329 (452)
.+...+.+|.-+|+++.|+| ..++|++|+.|..|.+|....-. .+.. ..
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t-yd 327 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET-YD 327 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-cc
Confidence 99999999999999999999 45788999999999999764211 0111 12
Q ss_pred CCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeecc
Q 012994 330 KRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 330 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 362 (452)
.|...|.+++||. |.-.+++-+.||.+.|=++.
T Consensus 328 ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 3557899999987 45567788999999886664
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2e-20 Score=155.11 Aligned_cols=286 Identities=15% Similarity=0.187 Sum_probs=206.5
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC------CceEEEee-cCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN------RRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
.+.+.+|.+.|+++.|+.++ ++|++|+.|..+++|++.. .+++.... .|.+.|.|++|......|++|+.++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 34578999999999999998 9999999999999999753 34454433 4668999999999889999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec---CCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC-ccee--cccCC
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK---NSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ-PINS--FQWGT 203 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~--~~~~~ 203 (452)
+|.+.|+++.+. +....+. +.|+.+..+|..+.+++.. +.|.+||.+... ++.. .....
T Consensus 128 ~VI~HDiEt~qs-------------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 128 TVIKHDIETKQS-------------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred eeEeeeccccee-------------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 999999987643 3333333 3788999999888887775 679999998765 3322 22234
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc-eEEE----eec---ccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-RKVI----MRT---KSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
....++.|+|..+.+|++.+..+-+.+||.+..... .... ++. .-....|+|.|..+++.- ....-.+||+
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR-R~~~P~~~D~ 273 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR-RGKCPLYFDF 273 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh-ccCCCEEeee
Confidence 567889999999999999999999999999875432 1111 122 125678999888755433 3333344555
Q ss_pred CCccccceeeeCc-------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------eee
Q 012994 276 RKLDEAKCVHMGH-------ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS----------------------REI 326 (452)
Q Consensus 276 ~~~~~~~~~~~~~-------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~----------------------~~~ 326 (452)
.......... .| ...+.+++|-.|- .+++|+.+-.|++|.+..... ...
T Consensus 274 ~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~ 351 (609)
T KOG4227|consen 274 ISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELT 351 (609)
T ss_pred ecccceeEec-cCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeE
Confidence 4422222211 22 2346778887654 499999999999998752110 011
Q ss_pred eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 327 YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 327 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
...+|..-++.+.|+|...+|++.+-...++||.-
T Consensus 352 VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 352 VLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEecccccccceeecCCcceEeccchhhheecccc
Confidence 23445577889999999999999999999999964
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=2.4e-20 Score=148.56 Aligned_cols=241 Identities=16% Similarity=0.243 Sum_probs=183.7
Q ss_pred cccccEEEEEeCCCC----cceEEEeeCCCcEEEEeCCCCce----EEEe-----ecCCCCeeEEEEcc-CCCeEEEEeC
Q 012994 64 GHRDGISCMAKNPNY----LKGFFSGSMDGDIRLWDIANRRT----VCQY-----SGHQGAVRGLTVST-DGRILVSCGT 129 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~----~~~l~tg~~dg~i~iwd~~~~~~----~~~~-----~~h~~~v~~l~~~~-~~~~l~s~~~ 129 (452)
.|.-+++.+.|.|+. +.+|||.+ ..+++|.+...+. ...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999985 34566655 4799999874221 1111 24667999999987 7789999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEE
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
|-+..|||++++. .+.....+-.|...|..+
T Consensus 172 DTTCTiWdie~~~-------------------------------------------------~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 172 DTTCTIWDIETGV-------------------------------------------------SGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred cCeEEEEEEeecc-------------------------------------------------ccceeeEEEecCcceeEE
Confidence 9999999997761 112233455689999999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe----ecccceEEEccCCCceEEeec-CCCeEEEEeCCCcccccee
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM----RTKSNSISWNPMEPMNFTAAN-EDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~ 284 (452)
+|...+.++|++.+.||.+++||++....-..+.. ..+...++|++....++++-. ....|.+.|++....+...
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 99998888999999999999999998765444432 233467899999888877755 4568999999999999999
Q ss_pred eeCcccceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCce------eeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcE
Q 012994 285 HMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRS------REIYHTKRMQRVFCVKFSC-DASYVISGSDDTNL 356 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i 356 (452)
+.+|.+.|++++|.|. ...|++++.|..+.+||+...-. +..+. ..+.|+.+.|++ .+.+|+.+.. +.+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~-kkl 359 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFG-KKL 359 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEec-Cee
Confidence 9999999999999994 56899999999999999986432 12222 236799999996 5667776553 344
Q ss_pred EE
Q 012994 357 RL 358 (452)
Q Consensus 357 ~i 358 (452)
.|
T Consensus 360 ei 361 (364)
T KOG0290|consen 360 EI 361 (364)
T ss_pred eE
Confidence 44
No 170
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=5.8e-20 Score=146.38 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=206.3
Q ss_pred ccEEEEEeC--CCCcceEEEeeC----CCcEEEEeCC--CCceEEEe-ecCCCCeeEEEEccCC-----CeEEEEeCCCc
Q 012994 67 DGISCMAKN--PNYLKGFFSGSM----DGDIRLWDIA--NRRTVCQY-SGHQGAVRGLTVSTDG-----RILVSCGTDCT 132 (452)
Q Consensus 67 ~~V~~~~~~--~~~~~~l~tg~~----dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~-----~~l~s~~~dg~ 132 (452)
-.++++.|+ |+...+||.|+. .+.|.|-.+. +++.+..- -.|.-+++.+.|.|+. .+|||++. .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--F 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--e
Confidence 367888888 333367888874 4566666543 34433221 2588999999999976 35666543 7
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+++|.+........ +... +.+. .-..+..++++..|+
T Consensus 123 LRlWri~~ee~~~~---------~~~~------------------------------L~~~----kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 123 LRLWRIGDEESRVE---------LQSV------------------------------LNNN----KNSEFCAPLTSFDWN 159 (364)
T ss_pred EEEEeccCcCCcee---------hhhh------------------------------hccC----cccccCCcccccccc
Confidence 99999864311000 0000 0000 011245689999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCC----ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSP----ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
.-+++++.+++-|-+..|||+.++.. .+.+.+...+..++|...+..+|++.+.||.+++||++..+....++...
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCC
Confidence 99999999999999999999998733 34455677889999999999999999999999999999988777666543
Q ss_pred --ccceEEEEEcC-CCCEEEEEeCC-CeEEEEECCCCceeeeeccCCcCcEEEEEEcCC-CCEEEEeeCCCcEEEeeccc
Q 012994 289 --ESAVMDIDYSP-TGREFVTGSYD-RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 289 --~~~v~~~~~s~-~g~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~ 363 (452)
..+...++|++ |-+++|+-..| ..|.|.|++.......-...|.+.|++++|.|. ...|+|+|+|..+.|||+..
T Consensus 240 ~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 35788899998 55788876655 459999999766554545667799999999994 56899999999999999975
Q ss_pred ccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhH
Q 012994 364 SEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIY 408 (452)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 408 (452)
.-. .+.+.+...| ....+|+.+.|.+..|.-+.
T Consensus 320 ~~~----~~~~dPilay--------~a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 320 MPR----ENGEDPILAY--------TAGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ccc----cCCCCchhhh--------hccceeeeeeecccCCCEEE
Confidence 432 2233344443 56789999999999887553
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.87 E-value=4.6e-22 Score=179.62 Aligned_cols=287 Identities=18% Similarity=0.272 Sum_probs=218.8
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
+.+..|.||.++|+|+.|...| .++++|+.|..|+||..+++.++....||.+.|+.++.+.+..++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 4567789999999999999999 999999999999999999999999999999999999999998999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcce---eccc-CCCceEEEEE
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPIN---SFQW-GTDTVISVRF 211 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~---~~~~-~~~~i~~~~~ 211 (452)
.+..+..+ .....+.+.|++++|+|-. .++ +|++++||.+-.-.+. .... ....+.++.|
T Consensus 260 rl~~~~pv------------svLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 260 RLPDGAPV------------SVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred ecCCCchH------------HHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeec
Confidence 99888433 3345567889999999876 333 3789999988111111 1111 1345566666
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
...+ .-+++|+.|+.-..|.+......... ..-+..+.+...+.+++-.+..+.+|++..+... ....+|...
T Consensus 325 ~~~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~-----lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-H~l~ghsd~ 397 (1113)
T KOG0644|consen 325 ENNG-DRFLTGSRDGEARNHEFEQLAWRSNL-----LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-HNLMGHSDE 397 (1113)
T ss_pred cccc-cccccccCCcccccchhhHhhhhccc-----eEEEeccccccccceeeeeeeEeeeeecccchhh-hhhcccccc
Confidence 6666 56789999999888876432211110 0011111233345666667777888888765433 345589999
Q ss_pred eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 292 VMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 292 v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
+..+.++| +.....+++.||...|||+-.|..+..+..+| ..+...+||+||..++....-|.++|.....++..
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 99999999 44556788999999999999999888887776 67888899999999998888899999987666554
No 172
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.87 E-value=4.7e-20 Score=167.64 Aligned_cols=258 Identities=16% Similarity=0.223 Sum_probs=189.5
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce--EEE----eecCCCCeeEEEEccCC--CeEEEEeCCCcEEEE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQ----YSGHQGAVRGLTVSTDG--RILVSCGTDCTVKLW 136 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~----~~~h~~~v~~l~~~~~~--~~l~s~~~dg~v~iw 136 (452)
-...|+|+.|+|..+++++.|+.+|.|.+||+..+.. ... ...|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 3678999999999889999999999999999987654 222 24688999999997744 449999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
+++.-..... .... ........-......++++.|.+..+
T Consensus 321 ~~~~l~~P~e------------~~~~----------------------------~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 321 DTDMLSLPVE------------GLLL----------------------------ESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred eccccccchh------------hccc----------------------------ccccccccccccccceeeEeeccCCC
Confidence 8754322100 0000 00000000001245688999999999
Q ss_pred cEEEEEecCCeEEEEEccCCCCc---------eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC
Q 012994 217 NVLATTASDRSITLYDLRMSSPA---------RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG 287 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 287 (452)
+.+++|+.+|.|.--+-...... ....+.+.+..+.++|....+|.+++ |-.+++|.......+...+..
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~ 439 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS 439 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh
Confidence 99999999999877333222211 12234567789999999999888888 999999998855566666667
Q ss_pred cccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeecc-CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 288 HESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 288 ~~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+...+++++|||.. ..++++..||.|.+||+........... .+....+.+.|+++|+.|++|...|.+++|++..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 77789999999954 5688888899999999986554333211 1235678889999999999999999999999864
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=3.2e-18 Score=159.74 Aligned_cols=291 Identities=29% Similarity=0.484 Sum_probs=225.3
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-eEEEeecCCC-CeeEEEE-ccCCC-eEEEEeC-CCcEEE
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYSGHQG-AVRGLTV-STDGR-ILVSCGT-DCTVKL 135 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~-~v~~l~~-~~~~~-~l~s~~~-dg~v~i 135 (452)
.+.+|...+.++.|.+.+ ..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 467899999999999998 888999999999999998876 6667766443 7777777 78777 5555455 999999
Q ss_pred EeCCC-CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEE
Q 012994 136 WNVPV-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (452)
Q Consensus 136 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 211 (452)
|+... . ........+...+..+.+++++..++.++ +.+.+|+...+..+..+..|...+.+++|
T Consensus 139 ~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTPG------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCCC------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 99976 2 23344555667788999999998777764 57999999998889999989999999999
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCce-EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPAR-KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
+|++..++++++.|+.|.+||........ .+..........|++++ ..+++++.++.+++|+............+|..
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 285 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCc
Confidence 98885355555999999999888555555 23322222222788888 56679999999999999876652222267889
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec-cCCcCcEEEEEEcCCCCEEEEe-eCCCcEEEeeccccc
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-TKRMQRVFCVKFSCDASYVISG-SDDTNLRLWKAKASE 365 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 365 (452)
.+.++.|+|++..+++++.|+.+.+||........... ..+...+..+.|.+++..++.+ ..|+.+.+|+.....
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 99999999988888889999999999998877665554 3444569999994342455555 688999999998776
No 174
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.2e-21 Score=161.92 Aligned_cols=286 Identities=22% Similarity=0.321 Sum_probs=219.4
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEcc--CCCeEEEEeCCCcE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVST--DGRILVSCGTDCTV 133 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~l~s~~~dg~v 133 (452)
.+...|.+|.+.|+.+.|+..| ..|++|+.|..|.+||+..+.....+ .+|...|..-.|.| +..-+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 3556789999999999999999 99999999999999999998876665 57999999989988 44679999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
++=.+..... -+....+..|.++|.-++.-|
T Consensus 212 r~s~i~~t~~-------------------------------------------------~e~t~rl~~h~g~vhklav~p 242 (559)
T KOG1334|consen 212 RVSEILETGY-------------------------------------------------VENTKRLAPHEGPVHKLAVEP 242 (559)
T ss_pred eeeeeccccc-------------------------------------------------eecceecccccCccceeeecC
Confidence 9876532211 011334455789999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEeec-------ccceEEEccCCCceEEeecCCCeEEEEeCCCcccc-----
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRT-------KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA----- 281 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----- 281 (452)
+.+.-|.+++.|+.+.-+|++...+...+.... ....++..|...+.+++++.+..+++||.+.....
T Consensus 243 ~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~ 322 (559)
T KOG1334|consen 243 DSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGV 322 (559)
T ss_pred CCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccch
Confidence 999999999999999999999887766655321 34678899999999999999999999999875433
Q ss_pred -ceeee-----CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------eeee-eccCC-cCcEEEEEE-
Q 012994 282 -KCVHM-----GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR------------SREI-YHTKR-MQRVFCVKF- 340 (452)
Q Consensus 282 -~~~~~-----~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~------------~~~~-~~~~~-~~~v~~~~~- 340 (452)
..... .....|++++|+.++.-|.++-.|-.|++|.-.-+. .... +..+. ...|..+-|
T Consensus 323 ~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFf 402 (559)
T KOG1334|consen 323 LDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFF 402 (559)
T ss_pred hhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeec
Confidence 11111 223469999999887777777778889999543221 1112 22222 234667765
Q ss_pred cCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHH
Q 012994 341 SCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYK 409 (452)
Q Consensus 341 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 409 (452)
-|...|+++|++-|.|.||+-.+++.+..+. +....|+++..||.+|.+..+
T Consensus 403 GPrsEyVvSGSDCGhIFiW~K~t~eii~~Me-----------------gDr~VVNCLEpHP~~PvLAsS 454 (559)
T KOG1334|consen 403 GPRSEYVVSGSDCGHIFIWDKKTGEIIRFME-----------------GDRHVVNCLEPHPHLPVLASS 454 (559)
T ss_pred cCccceEEecCccceEEEEecchhHHHHHhh-----------------cccceEeccCCCCCCchhhcc
Confidence 6788999999999999999999998876553 334488999999999976644
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=141.19 Aligned_cols=250 Identities=16% Similarity=0.188 Sum_probs=177.1
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----------ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----------RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
.|.+-+++|.+ ++|++|..+|.|.+..+.+. ..+...++|.++|+.++|.. .+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEee
Confidence 45666889998 99999999999999987631 23555689999999999983 4777776 59999998
Q ss_pred CCCCCCCCCCCCCCCCCCCeeE-EEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 138 VPVATLTDSDDSTDNSSEPLAV-YVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
..........+..-....+... ...-..++++...|..+-+..++ +.+..||+++++....+++|.+.+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 7543221111100000111111 22234677788887665544444 56999999999999999999999999988544
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
. ..+++|++||++++||.++.+.+..+......+ ........+|.+
T Consensus 168 ~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---------------------------------~lRp~~g~wiga 213 (325)
T KOG0649|consen 168 N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---------------------------------LLRPDWGKWIGA 213 (325)
T ss_pred C-cceeecCCCccEEEEeccccceeEEeccccChh---------------------------------hcCcccCceeEE
Confidence 4 357899999999999999998887664322111 111122346777
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
++-+ ..+|++|+ ...+.+|.++...+..++... .++..+.|.. ..+++++..+.+.-|.+.
T Consensus 214 la~~--edWlvCGg-Gp~lslwhLrsse~t~vfpip--a~v~~v~F~~--d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 214 LAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIP--ARVHLVDFVD--DCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred Eecc--CceEEecC-CCceeEEeccCCCceEEEecc--cceeEeeeec--ceEEEeccccceeeeeec
Confidence 7764 45888876 446999999999888887665 6788899954 467778877788888774
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=9.9e-21 Score=150.58 Aligned_cols=294 Identities=21% Similarity=0.301 Sum_probs=205.2
Q ss_pred ceEEEeeC----CCcEEEEeCCCCce---EEEeecCCCCeeEEEEcc-CCCeEEEEeCC-------CcEEEEeCCCCCCC
Q 012994 80 KGFFSGSM----DGDIRLWDIANRRT---VCQYSGHQGAVRGLTVST-DGRILVSCGTD-------CTVKLWNVPVATLT 144 (452)
Q Consensus 80 ~~l~tg~~----dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~-~~~~l~s~~~d-------g~v~iwd~~~~~~~ 144 (452)
-.|++|.. |+.|.+.++..+.. -..|..|.+.|..++-+| +.+.|+|+..+ ..+.||.++.....
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~ 106 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ 106 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc
Confidence 44556643 67888887765432 234667889999999999 56677776542 23667877543210
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc-cCCCceEEEEECCCCCcEEEEEe
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
. +..+.+.+..+. .+-+.|.|+.|.|++ ..+++-
T Consensus 107 S-------------------------------------------~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm- 141 (370)
T KOG1007|consen 107 S-------------------------------------------NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASM- 141 (370)
T ss_pred c-------------------------------------------ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEe-
Confidence 0 001122333333 245689999999987 455444
Q ss_pred cCCeEEEEEccCCCCc-eEEE------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 224 SDRSITLYDLRMSSPA-RKVI------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
.|..|.+|++.....+ ..+. ......+-.|+|.....-++...++++..||.++......+...|...|.++.
T Consensus 142 ~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 142 DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLD 221 (370)
T ss_pred ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeecc
Confidence 3899999999877663 3322 23345678899977666777888999999999999888888889999999999
Q ss_pred EcCCCC-EEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeecccccccccCCh--
Q 012994 297 YSPTGR-EFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQLGVLHP-- 372 (452)
Q Consensus 297 ~s~~g~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-- 372 (452)
|+|+-+ +|++|+.||.|+|||.+..+.......+|..+|+++.|+| ..++|++||.|..|.+|...+-..-..+..
T Consensus 222 fNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~ 301 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFED 301 (370)
T ss_pred CCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccc
Confidence 999765 5889999999999999987766555667778999999999 456888999999999998765332111111
Q ss_pred ----------hhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHHHHHH
Q 012994 373 ----------REQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRRTMM 418 (452)
Q Consensus 373 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 418 (452)
.++.+......+..+-.|...|+.++|....|.++.+-.-+.++..
T Consensus 302 dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 302 DESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 1111111122334455789999999999999988765555544444
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=6.5e-20 Score=152.09 Aligned_cols=226 Identities=17% Similarity=0.228 Sum_probs=174.6
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCc
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCT 132 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~ 132 (452)
.+.||+++|..++|+|.+.+.+|+||.|.+|.||++..+ +++..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 468999999999999988789999999999999998754 45677899999999999999 4568999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCc-eEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDT-VISV 209 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~-i~~~ 209 (452)
|.+||+.++. .+....+...++++.|+.+|.++++... .|+|||.++++.+..-..|.+. -..+
T Consensus 156 v~iWnv~tge-------------ali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 156 VSIWNVGTGE-------------ALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred EEEEeccCCc-------------eeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 9999999883 2333448889999999999999999874 6999999999999888777653 3445
Q ss_pred EECCCCCcEEEEEe---cCCeEEEEEccCCCCce---EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 210 RFNPAEPNVLATTA---SDRSITLYDLRMSSPAR---KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 210 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.|..++ .++-+|- .+..+-+||..+..... .+.....+.--.|.++...++++|-.|+.|+.|..........
T Consensus 223 ifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 223 IFLASG-KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred EEeccC-ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeE
Confidence 566666 4554443 47789999977654332 2333344445567888899999999999999999987655444
Q ss_pred eeeC--cccceEEEEEcCC
Q 012994 284 VHMG--HESAVMDIDYSPT 300 (452)
Q Consensus 284 ~~~~--~~~~v~~~~~s~~ 300 (452)
.+.. ...+-..+.|-|.
T Consensus 302 yln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 302 YLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred EecccccCCcccccccccc
Confidence 4332 2234556666664
No 178
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.9e-20 Score=159.82 Aligned_cols=227 Identities=20% Similarity=0.351 Sum_probs=172.4
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEcc--CCCeEEEEeCCCcEE
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVST--DGRILVSCGTDCTVK 134 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~ 134 (452)
+-..|.||++.|+|++|+.+| .+|++||.|-.+.|||.-..+++..+ .+|...|.++.|-| +.+.+++|+.|..|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 445789999999999999999 99999999999999999888887776 58999999999999 567899999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
++|+...+.... |-.-......+..|...|..++..|+
T Consensus 121 lfdl~~~~~~~~------------------------------------------d~~~~~~~~~~~cht~rVKria~~p~ 158 (758)
T KOG1310|consen 121 LFDLDSSKEGGM------------------------------------------DHGMEETTRCWSCHTDRVKRIATAPN 158 (758)
T ss_pred EEeccccccccc------------------------------------------ccCccchhhhhhhhhhhhhheecCCC
Confidence 999975422111 00112234556678889999999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEE-----------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccc---
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVI-----------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE--- 280 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--- 280 (452)
+++.+.+++.||+|+-||++.......-. .-....++..+|..+.++++|+.+...++||.+...+
T Consensus 159 ~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 159 GPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred CCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 99999999999999999998743221111 0123468899999999999999999999999542110
Q ss_pred ---------------cceeeeCcc-----------cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 281 ---------------AKCVHMGHE-----------SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 281 ---------------~~~~~~~~~-----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
......+|. ..++-+.|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 239 s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 239 SDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 111112232 12566889999987766655567999999987765544
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3.7e-18 Score=152.24 Aligned_cols=266 Identities=14% Similarity=0.223 Sum_probs=179.7
Q ss_pred EEEeeCCCcEEEEeCCC-Cc--eEEEeecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEeCCC-CCCCCCCCCCCCCCCC
Q 012994 82 FFSGSMDGDIRLWDIAN-RR--TVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPV-ATLTDSDDSTDNSSEP 156 (452)
Q Consensus 82 l~tg~~dg~i~iwd~~~-~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~-~~~~~~~~~~~~~~~~ 156 (452)
+++...++.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++.. +.+. .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~-----------~ 72 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT-----------F 72 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------E
Confidence 44457799999999964 33 444554 446678899999999887764 578999999963 2211 1
Q ss_pred eeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCC----cceecccCCCceEEEEECCCCCcEEEEEecCCeEE
Q 012994 157 LAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
............+.++|+++.+++++ +.+.+|++++.. .+..+. +.....+++++|++..++++...++.|.
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIR 151 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEE
Confidence 11111222446789999999888764 579999987432 222222 2234677889999866666777789999
Q ss_pred EEEccCCCCce-------EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-c--cceeeeC------cccceE
Q 012994 230 LYDLRMSSPAR-------KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-E--AKCVHMG------HESAVM 293 (452)
Q Consensus 230 i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~--~~~~~~~------~~~~v~ 293 (452)
+||+.+...+. ..........+.|+|++..++++...++.+.+|++.... . ....... +.....
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 99997643221 122344567899999999988888889999999987321 1 1111111 112234
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEECCCCce----eeeeccCCcCcEEEEEEcCCCCEEEEeeC-CCcEEEeecc
Q 012994 294 DIDYSPTGREFVTGSY-DRTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSCDASYVISGSD-DTNLRLWKAK 362 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 362 (452)
.+.++|+|++|+++.. ++.|.+|++..... ......+ .....+.|+|||++|++++. ++.|.+|++.
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 6889999999988854 78999999965321 1222221 34567899999999998775 8999999875
No 180
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=1.3e-18 Score=163.94 Aligned_cols=299 Identities=15% Similarity=0.214 Sum_probs=200.3
Q ss_pred ccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCeeEEEEccCCCeEEEE
Q 012994 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (452)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 127 (452)
.+.++.+|..|...|..++.++....+|+|||.||+|++||...- +...++..-.+.+.++...+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456788999999999999998875589999999999999997632 2233444456789999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE--EEecCCeeee-eecC--CCCeEEEe--CCeEEEEeCCCCCcceecc
Q 012994 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV--YVWKNSFWAV-DHQW--EGDLFATA--GAQVDIWNHNRSQPINSFQ 200 (452)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~ 200 (452)
+.||.|.+.+++......... ..... ....+.+..+ ++.. ....++.+ -+.+..||.+.......++
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVA------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred cCCCeEEEEEcccccccccee------eeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 999999999987631111000 00000 0111122222 2211 12233333 3789999999877666554
Q ss_pred c--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccCCC---ceEEeec-CCCeEEE
Q 012994 201 W--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPMEP---MNFTAAN-EDCNCYS 272 (452)
Q Consensus 201 ~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~-~~~~i~~ 272 (452)
. ..+.|++++.+|.+ +++++|...|.+.+||++-+.++....++ ..+..+..+|..+ ..+.++. ..+.+.+
T Consensus 1191 ~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 3 46789999999988 79999999999999999998887776554 4455666655443 4444454 6788999
Q ss_pred EeCCCccccceeeeC------------------cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee----------
Q 012994 273 YDSRKLDEAKCVHMG------------------HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR---------- 324 (452)
Q Consensus 273 ~d~~~~~~~~~~~~~------------------~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~---------- 324 (452)
|++.+.........+ +.-.....++...+..+.+|+.|+.|+.||.......
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~ 1349 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTS 1349 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccc
Confidence 998776433222221 1111122333334568899999999999997532111
Q ss_pred --------------------------------------ee-------eccCCcCcEEEEEEcCC-CCEEEEeeCCCcEEE
Q 012994 325 --------------------------------------EI-------YHTKRMQRVFCVKFSCD-ASYVISGSDDTNLRL 358 (452)
Q Consensus 325 --------------------------------------~~-------~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~i 358 (452)
.. ....|..+|+++++... ..+|++++.||.|+|
T Consensus 1350 ~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Iki 1429 (1431)
T KOG1240|consen 1350 YSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKI 1429 (1431)
T ss_pred ccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeee
Confidence 00 01123467888887654 458899999999999
Q ss_pred ee
Q 012994 359 WK 360 (452)
Q Consensus 359 w~ 360 (452)
|.
T Consensus 1430 Wk 1431 (1431)
T KOG1240|consen 1430 WK 1431 (1431)
T ss_pred cC
Confidence 94
No 181
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=3.2e-17 Score=152.99 Aligned_cols=299 Identities=26% Similarity=0.471 Sum_probs=223.6
Q ss_pred hHHHhhhhhc-cccccccccccccEEEEEeCCCCcceEEEeeC-CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCC-
Q 012994 46 TAAKLEKIFA-RPFIGALDGHRDGISCMAKNPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR- 122 (452)
Q Consensus 46 ~~~~~~~~~~-~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~- 122 (452)
..+.+|+... ......+.+|...|.+++|+|++ ..+++++. |+.+++|+...+..+..+.+|...|.+++|+|++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 212 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGL 212 (466)
T ss_pred ccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcce
Confidence 3556666655 67778889999999999999998 78888885 99999999998888889999999999999999987
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc-ceec
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP-INSF 199 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~-~~~~ 199 (452)
.+++++.|+.|.+||...+..... ....+.... ...+++++..+++++ +.+.+|+...... +..+
T Consensus 213 ~~~~~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 280 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTGKLLRS-----------TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280 (466)
T ss_pred EEEEecCCCcEEEEECCCCcEEee-----------ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE
Confidence 555559999999998764433221 111111221 127888887766554 5799999987765 4444
Q ss_pred ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--eec-ccceEEEccCC-CceEEeecCCCeEEEEeC
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--MRT-KSNSISWNPME-PMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~-~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~ 275 (452)
..|...+.++.|.|++ ..+++++.|+.+.+||........... ... .+..+.+ +.. ..++..+..++.+.+|+.
T Consensus 281 ~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 281 SGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred ecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeec
Confidence 5678899999999966 566668888999999988777666554 333 3677777 433 344444467788888998
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVT-GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
.... ..... .....+..+.+++ ...++. +..++.+.+|+.............. ..+....+++++..+++++.++
T Consensus 359 ~~~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 434 (466)
T COG2319 359 RTGK-PLKTL-EGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDN 434 (466)
T ss_pred CCCc-eeEEe-cCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCC
Confidence 8776 22222 2222288899998 544444 6889999999999887766654443 6799999999999999999999
Q ss_pred cEEEeeccc
Q 012994 355 NLRLWKAKA 363 (452)
Q Consensus 355 ~i~iw~~~~ 363 (452)
.+++|+..+
T Consensus 435 ~~~~~~~~~ 443 (466)
T COG2319 435 TIRLWDLKT 443 (466)
T ss_pred cEEEEeccC
Confidence 999999987
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=9.5e-18 Score=153.27 Aligned_cols=291 Identities=18% Similarity=0.249 Sum_probs=203.2
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC--C--ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--R--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
.|+-.++|.+++|.+ +++|+|..||.|.+|.--. + .....+.-|..+|++++|+++|.+|++|+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 477779999999999 9999999999999997432 1 2345577799999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceeccc-----------CCCce
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQW-----------GTDTV 206 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~-----------~~~~i 206 (452)
+++ ..........+..+.++||+.+.+.. +..|.+....+......+.+ ..+-.
T Consensus 282 T~~-------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 282 TGK-------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred CCC-------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 873 33444556788889999999876654 46788877655443333322 13446
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee------------cccceEEEccCCCceEEee--------cC
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR------------TKSNSISWNPMEPMNFTAA--------NE 266 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--------~~ 266 (452)
+.++++|.- +.++-.+..|.|.+||+-+...+..+..- ..+..++.+..+.. +++. ..
T Consensus 349 t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~-maT~E~~~d~~~~~ 426 (792)
T KOG1963|consen 349 TGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW-MATLEARIDKFNFF 426 (792)
T ss_pred eeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE-EEEeeeeehhhhcc
Confidence 778889854 56778889999999999888877665431 12233444444333 3322 12
Q ss_pred --CCeEEEEeCCCccc----cceeeeCcccceEEEEEcC-C-CCEEEEEeCCCeEEEEECCCCc------e---eeeecc
Q 012994 267 --DCNCYSYDSRKLDE----AKCVHMGHESAVMDIDYSP-T-GREFVTGSYDRTIRIFQYNGGR------S---REIYHT 329 (452)
Q Consensus 267 --~~~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~s~-~-g~~l~s~~~dg~i~iwd~~~~~------~---~~~~~~ 329 (452)
...+++|-.....+ ...+...|...+...++.+ . ...+++++.||.++||-+.+.+ . ......
T Consensus 427 ~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s 506 (792)
T KOG1963|consen 427 DGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGS 506 (792)
T ss_pred CceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeec
Confidence 23456665443222 2234457877766666655 2 2378999999999999984321 1 122233
Q ss_pred CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc-ccccccCC
Q 012994 330 KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA-SEQLGVLH 371 (452)
Q Consensus 330 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~ 371 (452)
.|..++++++|+.||..|+ .+.|+.|.+||..+ .+++.+..
T Consensus 507 y~k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~~~~l~~~~~ 548 (792)
T KOG1963|consen 507 YHKTPITALCFSQDGSLLA-VSFDDTITIWDYDTKNELLCTEG 548 (792)
T ss_pred cccCcccchhhcCCCcEEE-EecCCEEEEecCCChhhhhcccc
Confidence 4567899999999997555 56678999999998 55554443
No 183
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3e-19 Score=149.76 Aligned_cols=204 Identities=21% Similarity=0.322 Sum_probs=151.2
Q ss_pred EEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 012994 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS 149 (452)
Q Consensus 70 ~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 149 (452)
.+++|+++| ..+++|+.||+++||++.+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++........
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999998 999999999999999998888888888899999999999999999999999 999999988743222110
Q ss_pred CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC--CcE-E-EEEecC
Q 012994 150 TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE--PNV-L-ATTASD 225 (452)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~-l-~~~~~d 225 (452)
. ........+.|+.++ +.+ + +....-
T Consensus 226 ~--------------------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~ 255 (398)
T KOG0771|consen 226 F--------------------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPG 255 (398)
T ss_pred c--------------------------------------------------ccchhhhhceecccCCCceEEEEEecCCC
Confidence 0 001122233443322 111 1 222223
Q ss_pred CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEE
Q 012994 226 RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
+.|+.||+.... -.+.-...... .....|++++.|++|+++|
T Consensus 256 ~~v~~~~~~~w~-------------------------------------~~~~l~~~~~~-~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 256 GGVRLCDISLWS-------------------------------------GSNFLRLRKKI-KRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred CceeEEEeeeec-------------------------------------cccccchhhhh-hccCcceeEEEcCCCcEEE
Confidence 455555543221 10000000011 2235799999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.|+.||.|-|++..+.+........|...|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus 298 lGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999999999888888889999999999999999999999999988765
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=2.1e-18 Score=143.26 Aligned_cols=215 Identities=20% Similarity=0.300 Sum_probs=170.3
Q ss_pred EeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 104 QYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
.+.+|+++|..++|+| +...||+||.|.+|.||++..+.+...
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------ 119 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------ 119 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence 3568999999999999 667899999999999999976643211
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEE
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (452)
-.+++..+.+|...|--++|+|...++|++++.|..|.+|++.++..+..+.+...+.+++|+.+|.. ++
T Consensus 120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~-l~ 189 (472)
T KOG0303|consen 120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSL-LC 189 (472)
T ss_pred ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCce-ee
Confidence 12567788899999999999999999999999999999999999999999888888999999998876 88
Q ss_pred eecCCCeEEEEeCCCccccceeeeCccc-ceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceee-eeccCCcCcEEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHES-AVMDIDYSPTGREFVTGS---YDRTIRIFQYNGGRSRE-IYHTKRMQRVFC 337 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~---~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~ 337 (452)
+.+.|..|++||.+.......- .+|.+ .-..+.|-.+|..+-||- .+..+-+||..+-.... .........|.-
T Consensus 190 TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~ 268 (472)
T KOG0303|consen 190 TTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL 268 (472)
T ss_pred eecccceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE
Confidence 8999999999999987655544 45654 344566777888555543 47789999987644322 222233356777
Q ss_pred EEEcCCCCEEEE-eeCCCcEEEeeccccc
Q 012994 338 VKFSCDASYVIS-GSDDTNLRLWKAKASE 365 (452)
Q Consensus 338 ~~~s~~~~~l~s-~~~dg~i~iw~~~~~~ 365 (452)
=-|.+|.++|+. |-.|+.|+-|.+.+..
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 778888887765 5569999999998765
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.8e-18 Score=158.73 Aligned_cols=239 Identities=13% Similarity=0.100 Sum_probs=160.5
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecC
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
+..|.+||..... ...+..|...+.+..|+|||+.|+.++.+ ..|.+||+.++..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--------------------- 240 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--------------------- 240 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce---------------------
Confidence 4689999986554 45667788899999999999999987654 3688888865421
Q ss_pred CeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEE--EccCCCCceEE
Q 012994 165 SFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLY--DLRMSSPARKV 242 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~ 242 (452)
+.+..+.+ ....++|+|++..++++.+.+|.+.|| |+.++......
T Consensus 241 -----------------------------~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 241 -----------------------------KVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT 288 (429)
T ss_pred -----------------------------EEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence 01111122 223578999985444455578876666 55444433222
Q ss_pred EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 012994 243 IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
..........|+|++..+++++..++...+|++.......... .+.. ....|+|||++|+.++.++ +.+||+.++.
T Consensus 289 ~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 289 SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence 2233456899999999888887777777777654322222222 3333 4578999999998888765 5669999887
Q ss_pred eeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc--cccccccCChhhhhhhHHHHHHHHhhccCccccccccC
Q 012994 323 SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK--ASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH 400 (452)
Q Consensus 323 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (452)
........ ....+.|+|||++|+.++.+|.+.+|.+. +|+....+. .+...+...+|+
T Consensus 365 ~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-----------------~~~g~~~~p~ws 424 (429)
T PRK01742 365 TEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-----------------GSDGQVKFPAWS 424 (429)
T ss_pred eEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-----------------CCCCCCCCcccC
Confidence 55333221 23567899999999999999999988863 455555443 345567778898
Q ss_pred CCCC
Q 012994 401 RHLP 404 (452)
Q Consensus 401 ~~~p 404 (452)
|.+.
T Consensus 425 p~~~ 428 (429)
T PRK01742 425 PYLT 428 (429)
T ss_pred CCCC
Confidence 8764
No 186
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.2e-18 Score=140.15 Aligned_cols=266 Identities=13% Similarity=0.142 Sum_probs=177.0
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhh----ccccccccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCC-------
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIF----ARPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIAN------- 98 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~------- 98 (452)
.+.+.+...+.......+++|+.- +-.+....+.|.+.|..+.|.+ ..++.+|+++.|+++.||.-..
T Consensus 20 s~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~ 99 (361)
T KOG2445|consen 20 SFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHG 99 (361)
T ss_pred eecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccccc
Confidence 344556666666677777788742 2235567789999999999955 4348999999999999997521
Q ss_pred --CceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCC-CCeeEEEecCCeeeeeecC
Q 012994 99 --RRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS-EPLAVYVWKNSFWAVDHQW 173 (452)
Q Consensus 99 --~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (452)
.....++....+.|+++.|.| -|-.||+++.||.++||+.........-....... .............|+.|++
T Consensus 100 ~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 100 RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 123455677788999999999 56789999999999999986543322211111100 0001111234455677765
Q ss_pred C---CCeEEEeC-C------eEEEEeCCCCC----cceecccCCCceEEEEECCCCC---cEEEEEecCCeEEEEEccCC
Q 012994 174 E---GDLFATAG-A------QVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAEP---NVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 174 ~---~~~~~~~~-~------~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~ 236 (452)
. ..+++.+. . .+.||....+. .+..+..|.++|++++|.|+-+ .+|++++.|| |+||.+...
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVA 258 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeec
Confidence 3 34666664 2 58898776543 4567778999999999999643 4789999999 999998753
Q ss_pred CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 012994 237 SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316 (452)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iw 316 (452)
.....-... ..|+. -.. ++ -+....+.+|.+.|..+.|+-.|..|++.+.||.|++|
T Consensus 259 ~s~i~~ee~-------~~~~~---------~~~---l~----v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 259 RSAIEEEEV-------LAPDL---------MTD---LP----VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred cchhhhhcc-------cCCCC---------ccc---cc----eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 311100000 00000 000 00 01222345899999999999999999999999999999
Q ss_pred ECCC
Q 012994 317 QYNG 320 (452)
Q Consensus 317 d~~~ 320 (452)
...-
T Consensus 316 kany 319 (361)
T KOG2445|consen 316 KANY 319 (361)
T ss_pred hhhh
Confidence 8653
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=3.2e-19 Score=156.87 Aligned_cols=182 Identities=19% Similarity=0.317 Sum_probs=139.2
Q ss_pred CCeEEEEeCCCCCcce--ecc--cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc-------eEEE-eecccc
Q 012994 182 GAQVDIWNHNRSQPIN--SFQ--WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-------RKVI-MRTKSN 249 (452)
Q Consensus 182 ~~~i~i~d~~~~~~~~--~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~-~~~~~~ 249 (452)
+|.|-||+++....+- .+. .....|+.+.|.|-+...|++++.||.|++|.+..+... ..+. +...+.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 5789999998644321 111 135679999999999899999999999999998765432 2222 345678
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-ec
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI-YH 328 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~-~~ 328 (452)
++.|+|-...++++++.|.+|.+||+++..... .+.+|.+.|.+++|||||+.+|+.+.||+|++|+-+++..... -.
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~-~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYS-RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhh-eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 999999999999999999999999999865544 4559999999999999999999999999999999887654322 22
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeCC----CcEEEeecccc
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSDD----TNLRLWKAKAS 364 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 364 (452)
......--.+.|.-||+++++.+.| ..|.+||.++-
T Consensus 761 gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 761 GPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred CCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 2222334467788899998887765 45777876653
No 188
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=1.7e-17 Score=136.91 Aligned_cols=238 Identities=14% Similarity=0.223 Sum_probs=172.5
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 186 (452)
...+..+.|+.+...|..|+.|| .++|......... ........+.-+-|+..--.++... ..++
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~------------~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lk 71 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF------------SKDTEGVSIVEMLFSSSLVAIVSIKQPRKLK 71 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh------------cccCCCeEEEEeecccceeEEEecCCCceEE
Confidence 34577778999998999999987 5788775432100 0000011122223333322233332 3489
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccCCC--ceEE
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPMEP--MNFT 262 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~ 262 (452)
+++......+..+.. ...|.++.++. +.|+++-.+ .|+|||+++.+.+.++... .....++++++.. ++..
T Consensus 72 v~~~Kk~~~ICe~~f-pt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAy 146 (391)
T KOG2110|consen 72 VVHFKKKTTICEIFF-PTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAY 146 (391)
T ss_pred EEEcccCceEEEEec-CCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEe
Confidence 999988888777765 67899999885 345555544 4999999999998888754 3334666776654 3322
Q ss_pred e-ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeeccCC-cCcEEEEE
Q 012994 263 A-ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IRIFQYNGGRSREIYHTKR-MQRVFCVK 339 (452)
Q Consensus 263 ~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~~~v~~~~ 339 (452)
- ....|.|++||..+......+. .|.+++-+++|+++|.+|||++..|+ ||||.+.+|+.+..+..+. ...|.+++
T Consensus 147 p~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 147 PGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred cCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 2 3457899999999877665554 99999999999999999999999998 7999999999988886554 35689999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|+||+++|++.+..++|+||.++...
T Consensus 226 Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 226 FSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ECCCCCeEEEecCCCeEEEEEecccc
Confidence 99999999999999999999997654
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=6.5e-19 Score=151.91 Aligned_cols=142 Identities=19% Similarity=0.270 Sum_probs=118.3
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..|+.++.||.+.+.+ ..++....+.+|.+.|.+-.|+|||.-|+|++.||.|++|.-. |.+ ....
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GML------------RStl 141 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GML------------RSTV 141 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chH------------HHHH
Confidence 5788899999999988 4677788889999999999999999999999999999999853 211 1112
Q ss_pred EEecCCeeeeeecCCCCeE-EEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 160 YVWKNSFWAVDHQWEGDLF-ATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
.....++.|++|.|+..-+ .+.++.+.|=.+..+..+-..+.|.+-|.++.|++.. +++++|+.|-..++||....
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~ 218 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA 218 (737)
T ss_pred hhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc
Confidence 2345678999999987655 4556788888888888888889999999999999988 89999999999999997543
No 190
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=5.5e-17 Score=131.35 Aligned_cols=237 Identities=17% Similarity=0.269 Sum_probs=170.2
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE-eCC------
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT-AGA------ 183 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 183 (452)
...+++|+.|...++.+..+| .+||+.+--+......... ..+.-+..--..++++. +||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~------------~G~~~veMLfR~N~laLVGGg~~pky~ 73 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFID------------GGFKIVEMLFRSNYLALVGGGSRPKYP 73 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcccc------------CchhhhhHhhhhceEEEecCCCCCCCC
Confidence 345599999998888887765 7999986532211111111 11111111112233333 332
Q ss_pred --eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc-CCCCceEEEeeccc-ceEEEccCCCc
Q 012994 184 --QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR-MSSPARKVIMRTKS-NSISWNPMEPM 259 (452)
Q Consensus 184 --~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 259 (452)
.+.|||-....++.++.. ..+|.++.+.++ .+++. ..+.|.+|... +.+.+..+.....+ .-++..|....
T Consensus 74 pNkviIWDD~k~~~i~el~f-~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSF-NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEe-ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 399999777778877775 688999999873 34444 46889999987 55666666655433 34455555444
Q ss_pred eEEe--ecCCCeEEEEeCCCccc-cceeeeCcccceEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceeeeeccCC-cCc
Q 012994 260 NFTA--ANEDCNCYSYDSRKLDE-AKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IRIFQYNGGRSREIYHTKR-MQR 334 (452)
Q Consensus 260 ~~~~--~~~~~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~-~~~ 334 (452)
.+++ |...|.+.+.|+..... ......+|.+.|.+++++-+|..+||+|..|+ |||||..+|..+..+..+. ...
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~ 228 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD 228 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe
Confidence 3333 66779999999987665 45677799999999999999999999999998 8999999999988885543 467
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 335 VFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|.+++|||+..+|+++|+.|+++||.+....
T Consensus 229 iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999999999999987643
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4e-19 Score=154.14 Aligned_cols=242 Identities=21% Similarity=0.310 Sum_probs=170.4
Q ss_pred CCCCchhhhhhhHhhhhHHHhhhhh--------ccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--
Q 012994 30 PNLRPQEKAVEYVRALTAAKLEKIF--------ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-- 99 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-- 99 (452)
..++|.+..+.........++|+.. ....+.+|++|.++|.|+++.+.+ ..+++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~d 378 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQD 378 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCC
Confidence 3467777777777777778889882 223567899999999999999998 99999999999999966421
Q ss_pred --------ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee
Q 012994 100 --------RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH 171 (452)
Q Consensus 100 --------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (452)
.....+.||.+.|+.+++|+....|++|+.||++++|+...... ..+........+. ++++
T Consensus 379 p~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl----------svd~ 447 (577)
T KOG0642|consen 379 PDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL----------SVDR 447 (577)
T ss_pred cccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc----------eEee
Confidence 23456789999999999999888999999999999999866544 2222222112222 2222
Q ss_pred cCCCCeEEEeCCe---EEEEeCCCCCcceeccc-------CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceE
Q 012994 172 QWEGDLFATAGAQ---VDIWNHNRSQPINSFQW-------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK 241 (452)
Q Consensus 172 ~~~~~~~~~~~~~---i~i~d~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 241 (452)
-........++.. -.++++.....+..+.. ....+.-+.++|.. .+.+++..|+.|+++|..++..+..
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecccCCceecccccccccchh
Confidence 2222222222222 22333333333332221 12456677888877 6788888999999998877766543
Q ss_pred EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 242 VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
. ..|...++++++.|+|.+|++++.||.+++|.+...
T Consensus 527 ~-------------------------------------------~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 527 M-------------------------------------------VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred e-------------------------------------------eeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 3 267888999999999999999999999999999776
Q ss_pred ceeeee
Q 012994 322 RSREIY 327 (452)
Q Consensus 322 ~~~~~~ 327 (452)
.+....
T Consensus 564 ~~~~es 569 (577)
T KOG0642|consen 564 TCVLES 569 (577)
T ss_pred heeecc
Confidence 655443
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=7.8e-19 Score=145.75 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=193.6
Q ss_pred EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEE--EecCCeeeeeecCCCCeEEEe
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFATA 181 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 181 (452)
.+.+|.+.|.++.|+.++++|++|+.|..+++|+++..-.... .+++... .+...+.+++|......+.++
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-------~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-------PKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-------CCCceeccCccccceEEEEEccCCeeEecC
Confidence 3568999999999999999999999999999999865422211 2333333 345689999999999999998
Q ss_pred C--CeEEEEeCCCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC-CceEEE---eecccceEEE
Q 012994 182 G--AQVDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVI---MRTKSNSISW 253 (452)
Q Consensus 182 ~--~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~---~~~~~~~~~~ 253 (452)
+ ++|...|+.+.+.+..+.. ..+.|..+..+|.+ +.|++.+.+|.|.+||.+... ....+. .+....++.|
T Consensus 124 ~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 7 6899999999988877754 34589999999996 899999999999999998776 333332 2345578899
Q ss_pred ccCCCceEEeecCCCeEEEEeCCCccccceeeeCc------ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 254 NPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH------ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
+|..+.++++.+..+.+-+||.+..........+. ...-.++.|+|.|+.|.+--....-.+||+-+.++....
T Consensus 203 ~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k 282 (609)
T KOG4227|consen 203 HPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLK 282 (609)
T ss_pred cCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEe
Confidence 99999999999999999999999866544332211 122357889999999888766666778898875554332
Q ss_pred ccCC------cCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 328 HTKR------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 328 ~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
..+. ...+.+++|..|. .+++|+++-.|++|.+......
T Consensus 283 ~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 283 SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccc
Confidence 2211 1357788887654 4999999999999998764443
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.4e-17 Score=138.97 Aligned_cols=271 Identities=18% Similarity=0.250 Sum_probs=176.9
Q ss_pred hhHhhhhHHHhhhhhc---------cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC--------C----
Q 012994 40 EYVRALTAAKLEKIFA---------RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--------N---- 98 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~---------~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~--------~---- 98 (452)
+.......+++|.+.. -.++..|..|...|+++.|+|+| .+||+|+.+|.|.+|... +
T Consensus 30 aT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~~d~e~~~ 108 (434)
T KOG1009|consen 30 ATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFDADTEADL 108 (434)
T ss_pred ecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCccccchhhh
Confidence 3344455566676642 23667889999999999999999 999999999999999865 2
Q ss_pred ----CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC
Q 012994 99 ----RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE 174 (452)
Q Consensus 99 ----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (452)
......+.+|...|..++|+|++.++++++.|.++++||+..+....... .+..-+..++|.|-
T Consensus 109 ~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~------------dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 109 NKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD------------DHEHYVQGVAWDPL 176 (434)
T ss_pred CccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc------------ccccccceeecchh
Confidence 12345567899999999999999999999999999999999886544333 33445556666666
Q ss_pred CCeEEEeCC--eEEEEeCCCC---------------------Ccceeccc--CCCceEEEEECCCCCcEEEEEec----C
Q 012994 175 GDLFATAGA--QVDIWNHNRS---------------------QPINSFQW--GTDTVISVRFNPAEPNVLATTAS----D 225 (452)
Q Consensus 175 ~~~~~~~~~--~i~i~d~~~~---------------------~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~----d 225 (452)
+.++++-+. ..+.+.+... ...+.+.. -......++|+|+| .++++.+. +
T Consensus 177 ~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g 255 (434)
T KOG1009|consen 177 NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVG 255 (434)
T ss_pred hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeC
Confidence 666655441 1222222211 11111111 01234567889988 56665432 2
Q ss_pred Ce-----EEEEEccCC-CCceEEEee-cccceEEEcc-------CC---------CceEEeecCCCeEEEEeCCCccccc
Q 012994 226 RS-----ITLYDLRMS-SPARKVIMR-TKSNSISWNP-------ME---------PMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 226 g~-----i~i~d~~~~-~~~~~~~~~-~~~~~~~~~~-------~~---------~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
+. .++|+-... ++...+... .....+.++| .. -.++++......+++||.++..+..
T Consensus 256 ~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~ 335 (434)
T KOG1009|consen 256 GGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLA 335 (434)
T ss_pred CceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceE
Confidence 22 234432211 111111100 1111122221 11 1223444556789999999988888
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
....-|-..|++++|++||..|+..+.||...+-.++..+.-
T Consensus 336 ~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 336 VVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 888899999999999999999999999999888877765543
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1e-16 Score=146.58 Aligned_cols=329 Identities=14% Similarity=0.251 Sum_probs=232.3
Q ss_pred cccCCCC-CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCc--ceEEEeeCCCcEEEEeCCCCce
Q 012994 25 YHNYDPN-LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYL--KGFFSGSMDGDIRLWDIANRRT 101 (452)
Q Consensus 25 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~~l~tg~~dg~i~iwd~~~~~~ 101 (452)
.+++.|. +++.++.. +....+.+++....++.++..|.+|..+++.+.+.|... .++++++.||.|++||...+.+
T Consensus 16 n~~~~~avfSnD~k~l-~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L 94 (792)
T KOG1963|consen 16 NGNKSPAVFSNDAKFL-FLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL 94 (792)
T ss_pred cceecccccccCCcEE-EEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence 3344433 55555544 456677778888889999999999999999999998864 5678999999999998763322
Q ss_pred EEEee---------------------------------------------------------------------------
Q 012994 102 VCQYS--------------------------------------------------------------------------- 106 (452)
Q Consensus 102 ~~~~~--------------------------------------------------------------------------- 106 (452)
+.++.
T Consensus 95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 21110
Q ss_pred ----------------------------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 107 ----------------------------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 107 ----------------------------~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
.|.-.+++.+++|+++++|+|..||.|.+|.--.. ........
T Consensus 175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~---------~~~~~t~t 245 (792)
T KOG1963|consen 175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS---------SDDSETCT 245 (792)
T ss_pred EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc---------ccccccce
Confidence 24456789999999999999999999999964321 01123344
Q ss_pred EEEe-cCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC
Q 012994 159 VYVW-KNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (452)
Q Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 235 (452)
.+.| ...+.++.|+++|.++++|| +.+.+|.+.+++ .+-+..-.++|..+.++|++ .+.+....|+.|.+..+.+
T Consensus 246 ~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccc
Confidence 4554 46899999999999999999 569999999998 45555567899999999988 6777788899999998755
Q ss_pred CCCceEEEe------------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee----------CcccceE
Q 012994 236 SSPARKVIM------------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM----------GHESAVM 293 (452)
Q Consensus 236 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~~~~v~ 293 (452)
......+.. ..-...++++| ....++..+..+.+.+||+.+......... .+.-.++
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 443333221 22234567777 344567778889999999877654432221 2334578
Q ss_pred EEEEcCCCCEEEEEe--------CC--CeEEEEECCCCce----eeeeccCCcCcEEEEEEcC-CCC-EEEEeeCCCcEE
Q 012994 294 DIDYSPTGREFVTGS--------YD--RTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSC-DAS-YVISGSDDTNLR 357 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~--------~d--g~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~-~~~-~l~s~~~dg~i~ 357 (452)
.++.+-.|++++|.- .| -.+++|-...... ......+|...+...++.+ ... ..++++.||.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 888888999999864 23 3478998765433 2233455545555555544 333 789999999999
Q ss_pred Eeecccccc
Q 012994 358 LWKAKASEQ 366 (452)
Q Consensus 358 iw~~~~~~~ 366 (452)
||-+...+.
T Consensus 483 iW~~~~~~n 491 (792)
T KOG1963|consen 483 IWVFTDDSN 491 (792)
T ss_pred EEEEecccc
Confidence 999955443
No 195
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.4e-18 Score=138.32 Aligned_cols=191 Identities=14% Similarity=0.274 Sum_probs=150.1
Q ss_pred CCeEEEEeCCCCCcceecccCCCceEEEEECCC-CCcEEEEEecCCeEEEEEccCCCCceEEEeeccc--ceEEEccC-C
Q 012994 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA-EPNVLATTASDRSITLYDLRMSSPARKVIMRTKS--NSISWNPM-E 257 (452)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~-~ 257 (452)
.|.+++||..+++.+..+.++...++.+.|... +++.+.+|+.||+|++||+|.......+...... .-+++..+ .
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck 128 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCK 128 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCc
Confidence 478999999999999999999999999999874 6688999999999999999998877766654443 33334333 3
Q ss_pred CceEEeecC----CCeEEEEeCCCccc-cceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeee--cc
Q 012994 258 PMNFTAANE----DCNCYSYDSRKLDE-AKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIY--HT 329 (452)
Q Consensus 258 ~~~~~~~~~----~~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~--~~ 329 (452)
..++++|+. +..+.+||.|...+ .......|...|+++.|+| +-++|++|+.||.|.+||+.....-..+ ..
T Consensus 129 ~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi 208 (376)
T KOG1188|consen 129 KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI 208 (376)
T ss_pred CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh
Confidence 445666543 66899999999887 5666778999999999999 6679999999999999999865322111 12
Q ss_pred CCcCcEEEEEEcCCC-CEEEEeeCCCcEEEeecccccccccCCh
Q 012994 330 KRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 330 ~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
.+...|.++.|..++ +.|.+-+..+...+|+++.+.....+..
T Consensus 209 N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~ 252 (376)
T KOG1188|consen 209 NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLEN 252 (376)
T ss_pred cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccC
Confidence 233679999998877 3488888899999999999987655543
No 196
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.7e-17 Score=141.75 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=210.2
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
+|...-+.|..+|||...+|||..--.|++||+.+..+...-.-....|.-.-.+.|-..++.-..|.+|.+.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--- 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--- 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC---
Confidence 37888899999999966678999999999999986654333222233455445555555666667777776654311
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeec-CCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
.......+..-..++++ +...+++.+. ..|.-+++..|..+..+....+.++++..++-. .+|++
T Consensus 126 ------------~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~h-gLla~ 192 (703)
T KOG2321|consen 126 ------------RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEH-GLLAC 192 (703)
T ss_pred ------------eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCcc-ceEEe
Confidence 11111112222233333 3444555554 579999999999999999888999999999987 68999
Q ss_pred EecCCeEEEEEccCCCCceEEEeecc------------cceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc
Q 012994 222 TASDRSITLYDLRMSSPARKVIMRTK------------SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
|+.+|.|..||.++......+..... ++++.|..+ +..+++|+..|.+++||++...+......+..
T Consensus 193 Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~-gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e 271 (703)
T KOG2321|consen 193 GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD-GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE 271 (703)
T ss_pred cccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCC-ceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence 99999999999999888877765444 667788776 66699999999999999999887776666667
Q ss_pred cceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 290 SAVMDIDYSPT--GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 290 ~~v~~~~~s~~--g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
-+|..+.|.+. ++.+++.. ...++|||-.+|+........ ..+..+|+-|++.+++++-.++.+..|=+..-.+
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt--~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT--SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred cceeeecccccCCCceEEecc-hHHhhhcccccCCceeecccc--CCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 78999999875 44566553 567999999999988776554 4599999999999999999998888877665433
No 197
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.80 E-value=4.2e-16 Score=138.32 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=186.3
Q ss_pred ceE-EEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+.+ .+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~-------------~v~ 72 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK-------------VVA 72 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS-------------EEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc-------------EEE
Confidence 444 456678999999999999999998654443457899999999999999999999998873 444
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccC-------CCceEEEEECCCCCcEEEEEecCCeE
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWG-------TDTVISVRFNPAEPNVLATTASDRSI 228 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~l~~~~~dg~i 228 (452)
..........++++++|+++++++ +.+.++|..+.+++..+... ...+..+..+|..+.++++.-+.+.|
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I 152 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEI 152 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeE
Confidence 555566778899999999999876 78999999999998877542 34577888888775566555666888
Q ss_pred EEEEccCCCCce--EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee----------------------
Q 012994 229 TLYDLRMSSPAR--KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV---------------------- 284 (452)
Q Consensus 229 ~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---------------------- 284 (452)
-+.|........ .+..........|.|++++++++......+-++|..+.......
T Consensus 153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v 232 (369)
T PF02239_consen 153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV 232 (369)
T ss_dssp EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence 888887765443 33445566788999999998887777777777776553211110
Q ss_pred --------------------------------eeCcccceEEEEEcCCCCEEEEE----eCCCeEEEEECCCCceeeeec
Q 012994 285 --------------------------------HMGHESAVMDIDYSPTGREFVTG----SYDRTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 285 --------------------------------~~~~~~~v~~~~~s~~g~~l~s~----~~dg~i~iwd~~~~~~~~~~~ 328 (452)
......+ ..+..+|+++++.+. ...+.|.++|.++.+....+.
T Consensus 233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred EeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 0001111 345679999999887 445889999999987766654
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeC--CCcEEEeecccccccccCC
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSD--DTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~ 371 (452)
......+..+.|++||+++..+.. +|.|.|||..+.+.+..+.
T Consensus 312 ~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 312 PGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 433345999999999997665443 3479999999999887664
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.8e-16 Score=129.48 Aligned_cols=293 Identities=13% Similarity=0.163 Sum_probs=202.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
.-.+..++|++.- ..+|++..|-.|++||-.. +....++. ....|+|++|-|. ++.|+.|+.. -|.+|.......
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 4578889999976 7789999999999999766 44445542 3457999999994 4567777765 589998754332
Q ss_pred CCCC-CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 144 TDSD-DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 144 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
.... .........+........|+++.|.+||..+++++ ..+.|||..++..+.......+.+.-+.|+|++ +.|
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdg-d~l 253 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDG-DVL 253 (445)
T ss_pred cccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCC-CEE
Confidence 2211 11111112223333457899999999999999986 469999999998776665567788899999999 788
Q ss_pred EEEecCCeEEEEEc-cCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc-------e--------
Q 012994 220 ATTASDRSITLYDL-RMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-------C-------- 283 (452)
Q Consensus 220 ~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-------~-------- 283 (452)
+++.-|+..++|.. ++....+-....+.+...+|+|.|+.++.+.+....++-.......... .
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 88899999999954 4444555555667888999999999999998887777654432211000 0
Q ss_pred ---eeeC---cccceEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCceeeeeccC--CcCcEEEEEEcC---CC
Q 012994 284 ---VHMG---HESAVMDIDYSPTGREFVTGSYDR--------TIRIFQYNGGRSREIYHTK--RMQRVFCVKFSC---DA 344 (452)
Q Consensus 284 ---~~~~---~~~~v~~~~~s~~g~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~---~~ 344 (452)
+..+ -.+.+.+++|.|.|.+||+.-..+ .|.+||.+..-.......+ .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 0001 145688999999999999865433 3677887754443332111 112355677776 67
Q ss_pred CEEEEeeCCCcEEEeecc
Q 012994 345 SYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 345 ~~l~s~~~dg~i~iw~~~ 362 (452)
.+|..+=..|.|.-|.+.
T Consensus 414 ~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cEEEEEeccCceEeeeeE
Confidence 778778788888887764
No 199
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=3.1e-17 Score=149.50 Aligned_cols=230 Identities=18% Similarity=0.216 Sum_probs=165.1
Q ss_pred CcEEEEeCCCC-ceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCe
Q 012994 89 GDIRLWDIANR-RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (452)
Q Consensus 89 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (452)
+.+.+|++... .+...+. -...|+++.|+| +..+|+.|..+|.|.+||+..+..... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------s-------- 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------S-------- 281 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----------c--------
Confidence 57999999876 3444444 567899999999 677889999999999999977642110 0
Q ss_pred eeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC-cEEEEEecCCeEEEEEccCCCCceE----
Q 012994 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP-NVLATTASDRSITLYDLRMSSPARK---- 241 (452)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~---- 241 (452)
..-.....|..++..+.|..+.. .-+++++.||.|..|+++.-.....
T Consensus 282 ---------------------------~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 282 ---------------------------GLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred ---------------------------ccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 00111223678888888876432 3477888999999999876443111
Q ss_pred ---------EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-------cceeeeCcccceEEEEEcCCCCEEE
Q 012994 242 ---------VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE-------AKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
........++.|.+..+..|++|++.|.|+.-....... .......|.++|+++.++|-+..++
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 112345678999999999999999999998854443322 2335557889999999999777666
Q ss_pred EEeCCCeEEEEECC-CCceeeeeccCCcCcEEEEEEcCCC-CEEEEeeCCCcEEEeecccccc
Q 012994 306 TGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 306 s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
..+.|.+|+||... ...++..+... ...+++++|||-. ..++++..||.|.|||+.....
T Consensus 415 ls~gDW~vriWs~~~~~~Pl~~~~~~-~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 415 LSVGDWTVRIWSEDVIASPLLSLDSS-PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred eeeccceeEeccccCCCCcchhhhhc-cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 55559999999987 44444444333 3569999999965 4677788899999999975544
No 200
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=1e-18 Score=141.74 Aligned_cols=235 Identities=18% Similarity=0.274 Sum_probs=166.4
Q ss_pred cccccEEEEEeCCC---CcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCC
Q 012994 64 GHRDGISCMAKNPN---YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 64 ~h~~~V~~~~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~ 139 (452)
.|...-+.++|+-+ +..++|.|+.-|.|+|.|+.+++....+.+|...|+.|.++|+ .++++++|.|.+|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 37778888888654 3468999999999999999999999999999999999999995 4799999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
+..++.. ..-..+|.+.|.++.|++++ ..+
T Consensus 167 ~~~Cv~V-------------------------------------------------fGG~egHrdeVLSvD~~~~g-d~i 196 (385)
T KOG1034|consen 167 TDVCVAV-------------------------------------------------FGGVEGHRDEVLSVDFSLDG-DRI 196 (385)
T ss_pred CCeEEEE-------------------------------------------------ecccccccCcEEEEEEcCCC-Cee
Confidence 6633111 12245689999999999999 699
Q ss_pred EEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 299 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (452)
++++.|.+|++|++...+....+.. ++.|+|+....-. ....+.+.+.. ....|...|-|+.|-
T Consensus 197 ~ScGmDhslk~W~l~~~~f~~~lE~-----s~~~~~~~t~~pf---pt~~~~fp~fs-------t~diHrnyVDCvrw~- 260 (385)
T KOG1034|consen 197 ASCGMDHSLKLWRLNVKEFKNKLEL-----SITYSPNKTTRPF---PTPKTHFPDFS-------TTDIHRNYVDCVRWF- 260 (385)
T ss_pred eccCCcceEEEEecChhHHhhhhhh-----hcccCCCCccCcC---Ccccccccccc-------ccccccchHHHHHHH-
Confidence 9999999999999985543332221 1233333322000 00001111110 122688888888884
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCce-------------eeeeccCCcCcEEEEE--EcCCCCEEEEeeCCCcEEEeeccc
Q 012994 300 TGREFVTGSYDRTIRIFQYN-GGRS-------------REIYHTKRMQRVFCVK--FSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 300 ~g~~l~s~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~~v~~~~--~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
|+++++-+-++.|..|... -++. +..+.. ....|+-+. |.|-+++|+.|...|.|.+||++.
T Consensus 261 -gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~-~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~ 338 (385)
T KOG1034|consen 261 -GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY-PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDN 338 (385)
T ss_pred -hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc-CccceEEEEEeecHHHHHHhhccCCCcEEEEECCC
Confidence 6799999999999999872 1111 111111 123455554 456678999999999999999988
Q ss_pred ccc
Q 012994 364 SEQ 366 (452)
Q Consensus 364 ~~~ 366 (452)
.+.
T Consensus 339 ~ep 341 (385)
T KOG1034|consen 339 NEP 341 (385)
T ss_pred CCC
Confidence 765
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.77 E-value=1.1e-16 Score=129.73 Aligned_cols=235 Identities=17% Similarity=0.305 Sum_probs=179.8
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC---ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
-..+|+|.+|++|. ..+|++.....|.||..... +..+++..|...|++|.|+|..+.|++|+.|..-.+|....+
T Consensus 9 ~~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 46799999999998 99999999999999987655 467788999999999999999999999999999999998433
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
.+.++.-.+..++...+++.|+|.+ +.|++
T Consensus 88 -------------------------------------------------~~WkptlvLlRiNrAAt~V~WsP~e-nkFAV 117 (361)
T KOG1523|consen 88 -------------------------------------------------GTWKPTLVLLRINRAATCVKWSPKE-NKFAV 117 (361)
T ss_pred -------------------------------------------------CeeccceeEEEeccceeeEeecCcC-ceEEe
Confidence 1233444455567889999999988 89999
Q ss_pred EecCCeEEEEEccCCCCc-----eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCC-----C------------cc
Q 012994 222 TASDRSITLYDLRMSSPA-----RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSR-----K------------LD 279 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-----~------------~~ 279 (452)
|+.-..|.+|-++....- ........+.++.|+|++ .++++|+.|+.+++|..- . +.
T Consensus 118 gSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 118 GSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred ccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH
Confidence 999999999988765533 223345667899999976 458889999999888532 1 01
Q ss_pred ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-eeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 280 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
..........+.+..+.|+|+|+.|+-.+.|+.+.+-|...... .......+ -+..++.|-.+.. ++.++.|
T Consensus 197 ~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~-lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 197 QLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ-LPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred HHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc-CCceeeEeecCCc-eeecCCC
Confidence 11112224567899999999999999999999999999887653 33333333 6778888875544 4455555
No 202
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2.4e-15 Score=134.13 Aligned_cols=248 Identities=10% Similarity=0.177 Sum_probs=161.1
Q ss_pred cccccccccccEEEEEeCCCCcceEEEe-eCCCcEEEEeCC-CCce--EEEeecCCCCeeEEEEccCCCeEEEEeC-CCc
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSG-SMDGDIRLWDIA-NRRT--VCQYSGHQGAVRGLTVSTDGRILVSCGT-DCT 132 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg-~~dg~i~iwd~~-~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~ 132 (452)
++.++. +.+....++++|++ ++|+++ ..++.|.+|++. ++.. +.... ..+....++|+|++++|++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 334443 34667889999998 777655 458899999986 3332 22222 3345678999999998888764 889
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcce-------ecccC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPIN-------SFQWG 202 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~-------~~~~~ 202 (452)
|.+|++....... ..............+.++|+++++++.+ +.|.+||+.+...+. ... .
T Consensus 104 v~v~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~ 173 (330)
T PRK11028 104 VSVSPLDKDGIPV---------APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-E 173 (330)
T ss_pred EEEEEECCCCCCC---------CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-C
Confidence 9999996432111 1111111223456678899998886654 579999998743221 111 1
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCC--CC--ceEEEe-ec------ccceEEEccCCCceEEeecCCCeEE
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMS--SP--ARKVIM-RT------KSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
......+.|+|++..++++...++.|.+||+... .. ...+.. +. ....+.++|+++.++++...++.|.
T Consensus 174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 2346789999998544444445999999999742 21 222211 00 1224789999998888777788999
Q ss_pred EEeCCCccccceeeeCc---ccceEEEEEcCCCCEEEEEeC-CCeEEEEECC
Q 012994 272 SYDSRKLDEAKCVHMGH---ESAVMDIDYSPTGREFVTGSY-DRTIRIFQYN 319 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~ 319 (452)
+|+.......... .++ ......+.++|+|++|+++.. +++|.+|+++
T Consensus 254 v~~i~~~~~~~~~-~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 254 VFSVSEDGSVLSF-EGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEeCCCCeEEE-eEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9998654321111 111 124567999999999998775 8999999875
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=3.6e-18 Score=144.81 Aligned_cols=228 Identities=16% Similarity=0.217 Sum_probs=190.0
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (452)
+-..+.++.+| .+|+.|+.-|.|-.+|+.++++.+.+. -...|.++.|..+.+++|++- ...+.|||-.
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-------- 199 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-------- 199 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC--------
Confidence 45678899999 999999999999999999999998887 466899999999888887765 4689999964
Q ss_pred CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC
Q 012994 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (452)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 225 (452)
...+.+..-...+..+.|-|.-.++++++ |-+..-|+.+|+.+..+....+.+..++-+|-+ .++-+|...
T Consensus 200 ------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N-aVih~Ghsn 272 (545)
T KOG1272|consen 200 ------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN-AVIHLGHSN 272 (545)
T ss_pred ------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc-ceEEEcCCC
Confidence 34555666667888899999999999887 569999999999999999989999999999987 688899999
Q ss_pred CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEE
Q 012994 226 RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
|+|.+|......++..+ ..|.++|.++++.++|+|+|
T Consensus 273 GtVSlWSP~skePLvKi-------------------------------------------LcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 273 GTVSLWSPNSKEPLVKI-------------------------------------------LCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred ceEEecCCCCcchHHHH-------------------------------------------HhcCCCcceEEECCCCcEEe
Confidence 99999998776655433 26899999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
|.+.|..++|||++.-..+..+... .+...+++|..| +|+ .+....+.||.
T Consensus 310 TtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sqkg-lLA-~~~G~~v~iw~ 360 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKG-LLA-LSYGDHVQIWK 360 (545)
T ss_pred ecccccceeEeeeccccccceeecC--CCcccccccccc-cee-eecCCeeeeeh
Confidence 9999999999999988776666654 467888998665 344 34445789995
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=5.5e-15 Score=122.30 Aligned_cols=273 Identities=12% Similarity=0.179 Sum_probs=173.4
Q ss_pred cEEEEEeCCCCcceEEEeeCC--CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMD--GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.|.-+-|+. .++|..+.+ ..+++.++..+..++.+. -..+|.++.++.+ .|+++=.+ .|.|||+.+.++..
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLh 120 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLH 120 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeeh
Confidence 455556665 445554444 359999999888888876 5678999999754 66666554 59999999987765
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
...... .....+.++..+..+.+++.-+ |+|.+||..+-+++..+..|.+.+.+++|+++| .+||+
T Consensus 121 TI~t~~---------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G-~llAT 190 (391)
T KOG2110|consen 121 TIETTP---------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG-TLLAT 190 (391)
T ss_pred hhhccC---------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCC-CEEEE
Confidence 544332 1233456666777777888765 789999999999999999999999999999999 89999
Q ss_pred EecCCe-EEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE
Q 012994 222 TASDRS-ITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297 (452)
Q Consensus 222 ~~~dg~-i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 297 (452)
++..|+ |++|.+.+++.+..+.-+ ..+.+++|+|++. ++++.++.++|++|.+....... ...+-..-.|
T Consensus 191 ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~~~~-----~~~p~~~~~~ 264 (391)
T KOG2110|consen 191 ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVSNNP-----PESPTAGTSW 264 (391)
T ss_pred eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccccCC-----CCCCCCCCcc
Confidence 999997 789999999888877643 3345667777666 35566666677777665432110 0000000000
Q ss_pred -cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 298 -SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 298 -s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.+-.+.+.+--..+.-.+||.........+.......+..+.-.+....+..++.||.++.|.+..
T Consensus 265 ~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 265 FGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 000000000000111122444322111111111112333333335778899999999999998864
No 205
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=6.8e-16 Score=128.46 Aligned_cols=254 Identities=16% Similarity=0.191 Sum_probs=189.3
Q ss_pred cccEEEEEeCCCCcceEEEee-CCCcEEEEeCCCCceEEE------eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 66 RDGISCMAKNPNYLKGFFSGS-MDGDIRLWDIANRRTVCQ------YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~------~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
...|+.++|.-++..-++.+. .|-.+..+.+........ .....++|..++.. | ..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence 456778888766544455544 666777777665544333 23455677777665 3 36888889999999998
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcE
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (452)
..+... ..++..+.. ...+..+.-++..+.+
T Consensus 133 k~~d~h------------------------------------------------ss~l~~la~-g~g~~~~r~~~~~p~I 163 (412)
T KOG3881|consen 133 KSGDLH------------------------------------------------SSKLIKLAT-GPGLYDVRQTDTDPYI 163 (412)
T ss_pred cCCccc------------------------------------------------cccceeeec-CCceeeeccCCCCCce
Confidence 765321 001111111 1345556666777788
Q ss_pred EEEEecC--CeEEEEEccCCCCceEEE----------eecccceEEEccC-CCceEEeecCCCeEEEEeCCCccccceee
Q 012994 219 LATTASD--RSITLYDLRMSSPARKVI----------MRTKSNSISWNPM-EPMNFTAANEDCNCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 219 l~~~~~d--g~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 285 (452)
+++|+.. ..+.+||+.+.+.+..-. .+.-.+.+.|.+. ..+.|++++.-+.+++||.+....+...+
T Consensus 164 va~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f 243 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF 243 (412)
T ss_pred EecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe
Confidence 8899998 889999998875443321 2223356666654 35679999999999999999988888887
Q ss_pred eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 286 ~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
.-...+++++...|+|+++++|..-|.+..||++.++.......+..+.|+++..+|.+++|+++|-|..++|+|+++.+
T Consensus 244 d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 244 DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 77788999999999999999999999999999999998888666667899999999999999999999999999999977
Q ss_pred ccccC
Q 012994 366 QLGVL 370 (452)
Q Consensus 366 ~~~~~ 370 (452)
++...
T Consensus 324 ll~kv 328 (412)
T KOG3881|consen 324 LLHKV 328 (412)
T ss_pred hhhhh
Confidence 66443
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.9e-15 Score=136.45 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=151.9
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++..
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~--------------------- 236 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------- 236 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE---------------------
Confidence 3688999865544 344456778999999999998886543 345777777544210
Q ss_pred eeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEE
Q 012994 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVI 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 243 (452)
.+..+ .+......|+|++..++++.+.+| .|.+||+.++.......
T Consensus 237 -----------------------------~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~ 284 (429)
T PRK03629 237 -----------------------------QVASF---PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD 284 (429)
T ss_pred -----------------------------EccCC---CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC
Confidence 01111 122345789999865555555555 48889998776544333
Q ss_pred eecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC---CeEEEEEC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQY 318 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~ 318 (452)
.........|+|++..++++...++ .++.+|........ ...+........|+|||++|+..+.+ ..|.+||+
T Consensus 285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~--lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl 362 (429)
T PRK03629 285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR--ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDL 362 (429)
T ss_pred CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE--eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEEC
Confidence 3345678899999998877776554 55666665543222 22233345678999999998876543 35889999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCc---EEEeecccccccccCChhhhhhhHHHHHHHHhhccCcccc
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN---LRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIK 395 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (452)
.++........ .......|+|||++|+.++.++. +.++++. |+....+. .+...+.
T Consensus 363 ~~g~~~~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~-----------------~~~~~~~ 421 (429)
T PRK03629 363 ATGGVQVLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP-----------------ATDGQVK 421 (429)
T ss_pred CCCCeEEeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc-----------------cCCCCcC
Confidence 88875443322 12346789999999998887765 6666663 44333332 3445566
Q ss_pred ccccCCC
Q 012994 396 RIVRHRH 402 (452)
Q Consensus 396 ~~~~~~~ 402 (452)
..+|+|.
T Consensus 422 ~p~Wsp~ 428 (429)
T PRK03629 422 FPAWSPY 428 (429)
T ss_pred CcccCCC
Confidence 6777764
No 207
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5e-15 Score=128.82 Aligned_cols=312 Identities=12% Similarity=0.202 Sum_probs=192.8
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC-----------CCcEEEEe
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-----------DCTVKLWN 137 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-----------dg~v~iwd 137 (452)
=+-+.|||.| .||+|--.-| |.+|--.+...++.+. |. .|.-+.|||+.+||+|-+. ...+.|||
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3568899999 9999988765 7799877777777776 55 4888999999999999753 25799999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEe---------------------------
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWN--------------------------- 189 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d--------------------------- 189 (452)
+.+|.....+........ ....+.||.|++++|.-.+ .|.||+
T Consensus 289 I~tG~lkrsF~~~~~~~~---------~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ 359 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYL---------KWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSN 359 (698)
T ss_pred ccccchhcceeccCCCcc---------ccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcc
Confidence 999988776655322111 0112344445555444432 344444
Q ss_pred --------------------CCCCCcceecccCCCceEEEEECCCCCcEEEEE----------ecCCeEEEEEccCCC-C
Q 012994 190 --------------------HNRSQPINSFQWGTDTVISVRFNPAEPNVLATT----------ASDRSITLYDLRMSS-P 238 (452)
Q Consensus 190 --------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~-~ 238 (452)
+.+++.++.-..+.-.=..+.|..+| .+|+.- +.=..+.|+.++... +
T Consensus 360 llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~g-dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp 438 (698)
T KOG2314|consen 360 LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSG-DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP 438 (698)
T ss_pred eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCC-cEEEEEEEeeccccccceEeeEEEEEeeccCCC
Confidence 33333333333322222234555555 344321 111234555555433 4
Q ss_pred ceEEEeecccceEEEccCCCceEEeecC--CCeEEEEeCC-CccccceeeeCcccceEEEEEcCCCCEEEEEe---CCCe
Q 012994 239 ARKVIMRTKSNSISWNPMEPMNFTAANE--DCNCYSYDSR-KLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRT 312 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~d~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~dg~ 312 (452)
+....+...+-..+|-|.|+.+.+..+. ..++.+|... +...+..+..-.....+.+.|+|.|++++.+. ..|.
T Consensus 439 ve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 439 VEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccc
Confidence 5556677778889999999987666554 3567777766 33333222222334577899999999987664 5788
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCc
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLP 392 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (452)
+.++|+........-...| ...+.+.|.|.|+|+++++.-+.. .+.+|-.+.+++++...... ..
T Consensus 519 l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrh---k~d~GYri~tfqGrll~~~~-----------i~ 583 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRH---KVDNGYRIFTFQGRLLKEDI-----------ID 583 (698)
T ss_pred eEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhh---ccccceEEEEeecHHHHHHH-----------HH
Confidence 9999998644444444444 568899999999999998864322 22344444455444322221 12
Q ss_pred cccccccCCCCChhhHH
Q 012994 393 EIKRIVRHRHLPKPIYK 409 (452)
Q Consensus 393 ~~~~~~~~~~~p~~~~~ 409 (452)
......|.|..|.++..
T Consensus 584 ~f~qF~WRPRPps~LS~ 600 (698)
T KOG2314|consen 584 RFKQFLWRPRPPSLLSE 600 (698)
T ss_pred HHHhhccCCCCCcccCH
Confidence 33467899998877743
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=5.2e-16 Score=142.60 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=147.0
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCC---CcEEEEeCCCCce--EEEeecCCCCeeEEEEccCCCeEEEEe-CCCc
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCG-TDCT 132 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~ 132 (452)
...+..|...+.+.+|+|+| +.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 34566788889999999999 777776543 3699999988754 3333333 44689999999888764 6787
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+.||.++. .++. ...+..+...+....|+
T Consensus 272 ~~Iy~~d~--------------------------------------------------~~~~-~~~lt~~~~~~~~~~wS 300 (429)
T PRK01742 272 LNIYVMGA--------------------------------------------------NGGT-PSQLTSGAGNNTEPSWS 300 (429)
T ss_pred EEEEEEEC--------------------------------------------------CCCC-eEeeccCCCCcCCEEEC
Confidence 66664321 1111 12222334556788999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
|++..+++++..+|...||++.............. ....|+|++..+++++. + .+..||+.+...... ...+ ..
T Consensus 301 pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~l-t~~~--~~ 374 (429)
T PRK01742 301 PDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMING-D-NVVKQDLTSGSTEVL-SSTF--LD 374 (429)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEEe-cCCC--CC
Confidence 99865566666788899998765433222221112 45789999998666554 3 466689876543221 1121 23
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECC--CCceeeeeccCCcCcEEEEEEcCC
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYN--GGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
..+.|+|+|++|+.++.+|.+.+|++. +|.....+. .+.+.+...+|+|-
T Consensus 375 ~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 375 ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence 567899999999999999988888753 455555554 33366888999984
No 209
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.73 E-value=5.2e-16 Score=126.28 Aligned_cols=278 Identities=13% Similarity=0.201 Sum_probs=193.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCe-EEEEeCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI-LVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~ 144 (452)
-+.|.-+.|..+....|.....|+.|.+|++...+-...+.....++.+++|||||+. |.+...|-.|.+|.+.+.+
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~-- 125 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK-- 125 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--
Confidence 4567788898887445566778999999999988888899888899999999999964 5566679999999997763
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe-----EEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ-----VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
.......+..+..++|+++|++.+..... +.|........+..+....-..+.+.|+|+| +.+
T Consensus 126 -----------~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg-~~l 193 (447)
T KOG4497|consen 126 -----------GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG-NWL 193 (447)
T ss_pred -----------eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC-cEE
Confidence 23333345566789999999999888742 4444444455566666667778899999988 555
Q ss_pred EEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-------------------
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE------------------- 280 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------------------- 280 (452)
+ +||---.-.+...........+.|+|.+.. +++|+.|+.+++.+.-+.+.
T Consensus 194 a---------Vwd~~Leykv~aYe~~lG~k~v~wsP~~qf-lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ 263 (447)
T KOG4497|consen 194 A---------VWDNVLEYKVYAYERGLGLKFVEWSPCNQF-LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLE 263 (447)
T ss_pred E---------EecchhhheeeeeeeccceeEEEeccccce-EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhh
Confidence 4 454322222223334455667788886654 77777777665543211000
Q ss_pred --------------------------------------c--c------eeeeCcccceEEEEEcCCCCEEEEEeC--CCe
Q 012994 281 --------------------------------------A--K------CVHMGHESAVMDIDYSPTGREFVTGSY--DRT 312 (452)
Q Consensus 281 --------------------------------------~--~------~~~~~~~~~v~~~~~s~~g~~l~s~~~--dg~ 312 (452)
+ . .-.....-.+.-++||+|..+++|-.+ -+.
T Consensus 264 ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pna 343 (447)
T KOG4497|consen 264 KETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNA 343 (447)
T ss_pred hhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCce
Confidence 0 0 000011234567899999999998764 356
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
+.+||++..+....+... .+|....|+|....|+.+.....+++|...-...++.
T Consensus 344 lW~Wdlq~l~l~avLiQk--~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 344 LWLWDLQNLKLHAVLIQK--HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred EEEEechhhhhhhhhhhc--cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 999999988776666555 5799999999887777777777899998876555443
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.2e-15 Score=140.56 Aligned_cols=275 Identities=15% Similarity=0.217 Sum_probs=187.2
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC--CCCeEEE--eCCeEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFAT--AGAQVD 186 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~i~ 186 (452)
+-..+.|+|-...++++...-.|.+||.+.++....+....... ..|..+.+-. |..++.+ .+|.|+
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~---------t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPD---------TRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCC---------CccceeeeecccchhheeeeccCceEE
Confidence 45667888988889998877799999999988776665544322 2334444432 2333333 348899
Q ss_pred EEeCCCC-----Ccceeccc-------CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec--ccceEE
Q 012994 187 IWNHNRS-----QPINSFQW-------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT--KSNSIS 252 (452)
Q Consensus 187 i~d~~~~-----~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~ 252 (452)
||+--.. +.+..+.. ..+.-.-+.|....+. |+++|.-..|+|||.........+.... .+++++
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeEeecccCCCccceeec
Confidence 9974221 22222111 1112234677776644 4555557899999998888777776543 344555
Q ss_pred EccCCCceEEeecCCCeEEEEeCCCccc--cceeeeCcccc--eEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeee
Q 012994 253 WNPMEPMNFTAANEDCNCYSYDSRKLDE--AKCVHMGHESA--VMDIDYSPTGRE-FVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~--v~~~~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
-+-....++++|..||.+++||.+.... .......|... |..+.+.+.|-- |++|+.||.|++||++.......+
T Consensus 1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred ccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc
Confidence 5555678899999999999999987654 56667788887 999999987654 999999999999999975222211
Q ss_pred --ccC--CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCC
Q 012994 328 --HTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 403 (452)
Q Consensus 328 --~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
..+ -.+.++++..+++...+++|+. +.|+||++. |+++..+.... ..+. ...+.+.+++|||..
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~-------~F~~---q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNP-------GFMG---QRIGSVSCLAFHPHR 1363 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCc-------cccc---CcCCCcceeeecchh
Confidence 111 1235999999999999999998 899999985 56666665221 1111 234556899999987
Q ss_pred Chhh
Q 012994 404 PKPI 407 (452)
Q Consensus 404 p~~~ 407 (452)
+.+.
T Consensus 1364 ~llA 1367 (1387)
T KOG1517|consen 1364 LLLA 1367 (1387)
T ss_pred Hhhh
Confidence 7544
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.2e-14 Score=134.14 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=144.5
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..|.+||... .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---------------------- 238 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---------------------- 238 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE----------------------
Confidence 4788999754 444556678889999999999999888764 35788888765421
Q ss_pred eeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCe--EEEEEccCCCCceEEE
Q 012994 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPARKVI 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~ 243 (452)
..+..+.+.+....|+|++..++++.+.+|. |.+||+.++.......
T Consensus 239 -------------------------------~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 239 -------------------------------ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred -------------------------------EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence 1111223455678899998666667666665 6677887665433222
Q ss_pred eecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC---CeEEEEEC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQY 318 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~ 318 (452)
.........|+|++..++++...++ .++++|....... .+ ..+...+....|+|||+.|+..+.+ ..|.+||+
T Consensus 288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~l-t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RI-SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Ee-ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence 2334457899999998777765544 6888887654322 22 2234456678999999999877643 36888998
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC------CcEEEeeccccc
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD------TNLRLWKAKASE 365 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~~ 365 (452)
.++... .+... ..+....|+|||++|+..+.+ ..+.++++..+.
T Consensus 366 ~~~~~~-~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 366 DGSGER-ILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CCCceE-eccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 665443 22222 246788999999988765442 257777775543
No 212
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=9.1e-15 Score=134.22 Aligned_cols=207 Identities=11% Similarity=0.098 Sum_probs=132.5
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---------------------- 232 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---------------------- 232 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE----------------------
Confidence 467777764 44444555677889999999999998877643 3478888765421
Q ss_pred eeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEe
Q 012994 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIM 244 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~ 244 (452)
. .+....+.+....|+|++..++++.+.+|...+|.+... .....+..
T Consensus 233 ------------------------------~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 233 ------------------------------R-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred ------------------------------E-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC
Confidence 1 111112344578999998666667778888777765422 22333322
Q ss_pred -ecccceEEEccCCCceEEeecCCCeEEEE--eCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC---eEEEEEC
Q 012994 245 -RTKSNSISWNPMEPMNFTAANEDCNCYSY--DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQY 318 (452)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~ 318 (452)
........|+|++..+++++..++...+| +........... +.......+|||||++|+..+.++ .|.+||+
T Consensus 282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~ 359 (427)
T PRK02889 282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL 359 (427)
T ss_pred CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence 22345678999999887776655544444 444332222121 222344678999999998777654 5999999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
.++........ .......|+|||++|+.++.++
T Consensus 360 ~~g~~~~lt~~---~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 360 ATGQVTALTDT---TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCeEEccCC---CCccCceECCCCCEEEEEEecC
Confidence 98876544322 2346789999999988776544
No 213
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=132.44 Aligned_cols=193 Identities=17% Similarity=0.272 Sum_probs=131.0
Q ss_pred eEEEeCCeEEEEeCCCCCcceecc----cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEE
Q 012994 177 LFATAGAQVDIWNHNRSQPINSFQ----WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSIS 252 (452)
Q Consensus 177 ~~~~~~~~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (452)
++....|++.++|....+....+. .....++|+.|-|.++.+++++-.+|.+++||....- .....+..
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~t~p~~~ 261 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GATAPSYQ 261 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cCCCCccc
Confidence 333445788888876632222121 1347899999999998999999999999999872111 11111111
Q ss_pred EccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc
Q 012994 253 WNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 332 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 332 (452)
..+++.. +.. ..+--.....+...+.-..+.|..++|||||++||+.+.||.++|||+.+..++..++...
T Consensus 262 ~~k~~~~-f~i-------~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF- 332 (636)
T KOG2394|consen 262 ALKDGDQ-FAI-------LTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF- 332 (636)
T ss_pred ccCCCCe-eEE-------eeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-
Confidence 1112211 111 1111111112222222234589999999999999999999999999999988877776655
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCC
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRH 402 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (452)
+...|++|||||+||++|++|--|.||.+...+.++.=+ +|..=|..++|.|.
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-----------------GHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-----------------GHKSWVSVVAFDPY 385 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-----------------ccccceeeEeeccc
Confidence 779999999999999999999999999999988876654 44555666777663
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=132.22 Aligned_cols=221 Identities=18% Similarity=0.269 Sum_probs=149.3
Q ss_pred CCCcceEEEeeCCCcEEEEeCCCCceEEEe----ecCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQY----SGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 76 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~----~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
|.+ --|+.|-..|.|.+.|....+....+ .-....|+|+.|-|. ...++.+-.+|.+.+||.........
T Consensus 183 ~~g-~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~---- 257 (636)
T KOG2394|consen 183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATA---- 257 (636)
T ss_pred CCC-cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCC----
Confidence 444 55778888899999887653222111 123478999999994 34566667899999998732211000
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeC-CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEE
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH-NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
+ +....+++..+... .|-- .+..++..+....+.|+.++|+|++ .+||+.+.||.++
T Consensus 258 -----p-----------~~~~~k~~~~f~i~-----t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLR 315 (636)
T KOG2394|consen 258 -----P-----------SYQALKDGDQFAIL-----TSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLR 315 (636)
T ss_pred -----C-----------cccccCCCCeeEEe-----eeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEE
Confidence 0 00011122222111 1111 1224555555567799999999987 8999999999999
Q ss_pred EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
|||..+...+.. +...-+...|++|||||+||++|+.
T Consensus 316 vF~fdt~eLlg~-------------------------------------------mkSYFGGLLCvcWSPDGKyIvtGGE 352 (636)
T KOG2394|consen 316 IFDFDTQELLGV-------------------------------------------MKSYFGGLLCVCWSPDGKYIVTGGE 352 (636)
T ss_pred EeeccHHHHHHH-------------------------------------------HHhhccceEEEEEcCCccEEEecCC
Confidence 999876543321 1123457899999999999999999
Q ss_pred CCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-----------------------------------CC----------
Q 012994 310 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-----------------------------------DA---------- 344 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-----------------------------------~~---------- 344 (452)
|-.|.||.+..++.+..-+ +|..+|+.|+|.| ++
T Consensus 353 DDLVtVwSf~erRVVARGq-GHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~ 431 (636)
T KOG2394|consen 353 DDLVTVWSFEERRVVARGQ-GHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRIN 431 (636)
T ss_pred cceEEEEEeccceEEEecc-ccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccccccc
Confidence 9999999999888777664 4559999999983 01
Q ss_pred ---CEEEEeeCCCcEEEeeccccccc
Q 012994 345 ---SYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 345 ---~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
-.+.+.+.|-.+.+||+....+.
T Consensus 432 ~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 432 SVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ceEEEeecccccceEEEEecchhhcc
Confidence 13667888999999999765543
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=6.9e-15 Score=135.54 Aligned_cols=216 Identities=12% Similarity=0.098 Sum_probs=142.1
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..|.+||.... ....+..+...+.+.+|+|||+.|+.++.+ ..|.+||+.++..
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---------------------- 240 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---------------------- 240 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE----------------------
Confidence 46899998544 444566677889999999999999887643 3578888755421
Q ss_pred eeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEE
Q 012994 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVI 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 243 (452)
..+....+...+..|+|++..++++.+.+| .|.+||+.++.......
T Consensus 241 -------------------------------~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 241 -------------------------------ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred -------------------------------EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc
Confidence 011111223346789999866666666665 59999998776433222
Q ss_pred eecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC---eEEEEEC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQY 318 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~ 318 (452)
.........|+|++..++++...++ .++.+++.......... +......++|||||++|+..+.++ .|.+||+
T Consensus 290 ~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~ 367 (433)
T PRK04922 290 HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL 367 (433)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence 2233457899999998877776555 47777765543222222 223345689999999998765443 5999999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC---CcEEEeeccc
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD---TNLRLWKAKA 363 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~ 363 (452)
.++........ .......|+|||++|+..+.+ +.|.++++..
T Consensus 368 ~~g~~~~Lt~~---~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 368 STGSVRTLTPG---SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred CCCCeEECCCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 88876533322 234567999999988766553 3577777743
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=134.09 Aligned_cols=219 Identities=20% Similarity=0.280 Sum_probs=156.6
Q ss_pred eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE
Q 012994 101 TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 101 ~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
+...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-------------------------------------- 83 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-------------------------------------- 83 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--------------------------------------
Confidence 345688999999999999999999999999999999985332
Q ss_pred eCCeEEEEeCCCCCccee-cccCCCceEEEEECCCC-CcEEEEEecCCeEEEEEccCCCC----------ceEE-Eeecc
Q 012994 181 AGAQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAE-PNVLATTASDRSITLYDLRMSSP----------ARKV-IMRTK 247 (452)
Q Consensus 181 ~~~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----------~~~~-~~~~~ 247 (452)
++.. -.+|...|.++.|-|.. ..++++|..|..|++||+...+. .... .+...
T Consensus 84 --------------llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~r 149 (758)
T KOG1310|consen 84 --------------LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDR 149 (758)
T ss_pred --------------eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhh
Confidence 1222 23578899999999853 36788999999999999975321 1111 12345
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---------CcccceEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---------GHESAVMDIDYSPT-GREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd 317 (452)
+..++..|+++..|.++++||.++.||++.......... ..--...++.++|. ..+|++|+.|-..++||
T Consensus 150 VKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 150 VKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred hhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhh
Confidence 678889999999999999999999999997432221111 11234678899994 56899999999999999
Q ss_pred CCC--------Cc----------eeeeeccCCc-----------CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 318 YNG--------GR----------SREIYHTKRM-----------QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 318 ~~~--------~~----------~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
.+. +. ++.-+..+|. ..++-++|+|+|.-|+..-....|+++|+..++...
T Consensus 230 ~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 230 RRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred hhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 431 11 1111211111 126778999999866655445589999999887765
Q ss_pred cCC
Q 012994 369 VLH 371 (452)
Q Consensus 369 ~~~ 371 (452)
.+.
T Consensus 310 ~y~ 312 (758)
T KOG1310|consen 310 PYF 312 (758)
T ss_pred eec
Confidence 443
No 217
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1e-16 Score=145.65 Aligned_cols=257 Identities=18% Similarity=0.267 Sum_probs=187.7
Q ss_pred HHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE
Q 012994 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 126 (452)
-+++|.+-+..++.+..||.+.|+.++.+..+ .++++++.|..|++|.+.++.++..+.+|++.|++|+|+|-. +
T Consensus 213 lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s 287 (1113)
T KOG0644|consen 213 LVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S 287 (1113)
T ss_pred eeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c
Confidence 45788888888999999999999999999987 889999999999999999999999999999999999999964 7
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCC
Q 012994 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTD 204 (452)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~ 204 (452)
.+.||++++||..-............ ....-+.++.+..++.-++++.. .-..|.+. .+..+..
T Consensus 288 ss~dgt~~~wd~r~~~~~y~prp~~~--------~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~------~l~~~~~ 353 (1113)
T KOG0644|consen 288 SSDDGTCRIWDARLEPRIYVPRPLKF--------TEKDLVDSILFENNGDRFLTGSRDGEARNHEFE------QLAWRSN 353 (1113)
T ss_pred CCCCCceEeccccccccccCCCCCCc--------ccccceeeeeccccccccccccCCcccccchhh------Hhhhhcc
Confidence 78999999999872211111110000 01123334444555555555542 22333221 1111222
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.+.-+..+.+-..+.+++-.+-.+++|++.++...+.+.. ......+.++|.+..+...++.||...+||+........
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 2222333333334566777788899999999887776653 456678899999999999999999999999998887777
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
...+| ..+...+||+||..++....-|.++|.....++.
T Consensus 434 y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 434 YFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 77775 4556678999999999999999999988765543
No 218
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=4.1e-15 Score=116.06 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=124.5
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
-.|++|...|.. +-+++++.|+.++-||+++|+..+.+++|+..|.++.--.....+++|+.||++++||..+++.+..
T Consensus 115 PeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 115 PEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CccceeEeccCC-CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence 469999999987 5666666899999999999999999999999999999855555789999999999999999987665
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 225 (452)
....... ........-+..+..-+...+++++| .+.+|+++..++...+.. ...+..+.|.. ..+++++..
T Consensus 194 ie~yk~~----~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi-pa~v~~v~F~~---d~vl~~G~g 265 (325)
T KOG0649|consen 194 IEPYKNP----NLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI-PARVHLVDFVD---DCVLIGGEG 265 (325)
T ss_pred eccccCh----hhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec-ccceeEeeeec---ceEEEeccc
Confidence 5443221 11222223334556667789999987 699999999998888875 56778888874 467788888
Q ss_pred CeEEEEEcc
Q 012994 226 RSITLYDLR 234 (452)
Q Consensus 226 g~i~i~d~~ 234 (452)
+.|.-|.+.
T Consensus 266 ~~v~~~~l~ 274 (325)
T KOG0649|consen 266 NHVQSYTLN 274 (325)
T ss_pred cceeeeeec
Confidence 889888764
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=7.5e-15 Score=119.19 Aligned_cols=209 Identities=15% Similarity=0.195 Sum_probs=161.9
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
+..-..+|+|.+|++|+..+|.+.....|.||......
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------------------------------------------ 43 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------------------------------------------ 43 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC------------------------------------------
Confidence 33345689999999999999999888899999875442
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC----CceEEEeecccceEEEccCCCce
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS----PARKVIMRTKSNSISWNPMEPMN 260 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 260 (452)
-.++..++..|...|++++|+|.. +.|++|+.|..-++|....+. .+..+.+.....++.|+|.++.
T Consensus 44 -------~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enk- 114 (361)
T KOG1523|consen 44 -------LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENK- 114 (361)
T ss_pred -------CceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCce-
Confidence 134567788899999999999988 678999999999999984332 2333456788899999998876
Q ss_pred EEeecCCCeEEEEeCCCcc---ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC-----C------------
Q 012994 261 FTAANEDCNCYSYDSRKLD---EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-----G------------ 320 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-----~------------ 320 (452)
|++|+....|.++-..... ....+...+.+.|+++.|+|++-+|++|+.|+..+||..- .
T Consensus 115 FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~P 194 (361)
T KOG1523|consen 115 FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMP 194 (361)
T ss_pred EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCc
Confidence 7888888877777655432 2344455778899999999999999999999999999742 1
Q ss_pred -CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 321 -GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 321 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|..+..+. ...+.+..+.|+|+|..|+-.+.|..+.+=|.....
T Consensus 195 FG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 195 FGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 11122221 234789999999999999999999999998887654
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=9.8e-15 Score=138.33 Aligned_cols=267 Identities=18% Similarity=0.201 Sum_probs=187.2
Q ss_pred EeCCCCceEEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec
Q 012994 94 WDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ 172 (452)
Q Consensus 94 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (452)
|+. .|..+..+..|...|..++.++.. .+++|||.||+|++||+..-.... .............+.+.++...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEeccCCceEEEEec
Confidence 765 578888899999999999998754 899999999999999986432110 0001122222356788888999
Q ss_pred CCCCeEEEeC--CeEEEEeCCCCC--cc-----eeccc-CCCceEEE-EECCCCCc-EEEEEecCCeEEEEEccCCCCce
Q 012994 173 WEGDLFATAG--AQVDIWNHNRSQ--PI-----NSFQW-GTDTVISV-RFNPAEPN-VLATTASDRSITLYDLRMSSPAR 240 (452)
Q Consensus 173 ~~~~~~~~~~--~~i~i~d~~~~~--~~-----~~~~~-~~~~i~~~-~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~ 240 (452)
+.+..+|+++ |.|.+.+++... .. ..... ..+.+.++ ++...... .++.+...+.|..||+++.....
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 9999888886 678888877621 11 11111 12333333 34333334 78888889999999999887766
Q ss_pred EEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCC---CEEEEEe--CCCe
Q 012994 241 KVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---REFVTGS--YDRT 312 (452)
Q Consensus 241 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~s~~--~dg~ 312 (452)
.+.. .+.+++++.+|.+. .++.|+..|.+.+||++-.........++..+++.+..+|-. ...++++ ..+.
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred hhhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 6553 46678899999888 689999999999999998777776666777889998888733 3444444 5778
Q ss_pred EEEEECCCCceeeeeccCC------------------cCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 313 IRIFQYNGGRSREIYHTKR------------------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
|.+|++.+|.....+.... .-.....++...+.++++|+.|..|+.||....+..
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 9999999986655543221 011223344445668999999999999998765443
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=1.4e-13 Score=111.93 Aligned_cols=215 Identities=16% Similarity=0.255 Sum_probs=152.0
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC-CCCCCCCCCCCCCCCeeEEEecCCee
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA-TLTDSDDSTDNSSEPLAVYVWKNSFW 167 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
+.|.|||=...+++.++. -..+|.++.+.++ .|++.- .+.|.||..... +.... ......+..+.
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~----------~et~~NPkGlC 140 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV----------IETRSNPKGLC 140 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee----------eecccCCCceE
Confidence 579999966677777776 6789999999876 555554 568999998743 22211 12222234456
Q ss_pred eeeecCCCCeEEEeC---CeEEEEeCCCCCc--ceecccCCCceEEEEECCCCCcEEEEEecCCe-EEEEEccCCCCceE
Q 012994 168 AVDHQWEGDLFATAG---AQVDIWNHNRSQP--INSFQWGTDTVISVRFNPAEPNVLATTASDRS-ITLYDLRMSSPARK 241 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~---~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~ 241 (452)
+++...+..+++.-| |+|+|.|+...+. ...+..|...|.|++.+-+| .++|+++..|+ |+|||..++..+..
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCcEeee
Confidence 666666677777776 7899999987766 47788999999999999998 89999999998 78999999988776
Q ss_pred EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 242 VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
+.-+ .....|.+++|||++.+||++|..|+++||.+...
T Consensus 220 ~RRG-----------------------------------------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 220 LRRG-----------------------------------------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eecC-----------------------------------------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 5421 22356888999999999999998899999887652
Q ss_pred ceeee------------------------eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 322 RSREI------------------------YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 322 ~~~~~------------------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
..... ++.. .+...-++|-.+.+.++..+.||.-+-+.
T Consensus 259 ~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~-~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 259 ENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLP-QGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred CCCccccccccccccccchhcccceeEEEEEcc-CCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 21110 0111 13455567766655666667777654433
No 222
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=8.7e-15 Score=118.07 Aligned_cols=157 Identities=14% Similarity=0.288 Sum_probs=112.3
Q ss_pred EEEEECCCCCcEEEEEec---------CCeEEEEEccCC-CCceEEEe--ecccceEEEccCCCceEEe-ecCCCeEEEE
Q 012994 207 ISVRFNPAEPNVLATTAS---------DRSITLYDLRMS-SPARKVIM--RTKSNSISWNPMEPMNFTA-ANEDCNCYSY 273 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 273 (452)
..+.|+|.|..+++.... -|...+|.++.. .....+.. ...+..++|+|++..++++ |..+..+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 457788877555554441 244666666433 33444433 3458999999999887555 5567899999
Q ss_pred eCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY---DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 274 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
|.+ ... +..-+...++.+.|||+|++|++|+. .|.|.+||+++.+.+..... ..++.++|+|||++|+++
T Consensus 89 d~~-~~~---i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~---~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 89 DVK-GKK---IFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH---SDATDVEWSPDGRYLATA 161 (194)
T ss_pred cCc-ccE---eEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc---CcEEEEEEcCCCCEEEEE
Confidence 996 222 22234567889999999999999874 46799999998777665533 458999999999999987
Q ss_pred eC------CCcEEEeecccccccccCC
Q 012994 351 SD------DTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 351 ~~------dg~i~iw~~~~~~~~~~~~ 371 (452)
+. |+.++||++. |+++....
T Consensus 162 ~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EeccceeccccEEEEEec-CeEeEecc
Confidence 64 7889999984 66665543
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=2.8e-15 Score=129.87 Aligned_cols=236 Identities=16% Similarity=0.193 Sum_probs=153.6
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEE-cc-------CCCeEEEEeCCCcEEE
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV-ST-------DGRILVSCGTDCTVKL 135 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-~~-------~~~~l~s~~~dg~v~i 135 (452)
-|...|.|+.|+... ..+ ..+.|..+.+|.-.+......+.-....|....+ -+ ....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~e-ei~-~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNE-EIY-FVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccc-eEE-EeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 477788899999885 444 4455666666553333222222211222211111 11 2246777788888777
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
.+- .++....+..|.+.+.+-.|+|+|
T Consensus 90 l~k-----------------------------------------------------~~rVE~sv~AH~~A~~~gRW~~dG 116 (737)
T KOG1524|consen 90 LNK-----------------------------------------------------SARVERSISAHAAAISSGRWSPDG 116 (737)
T ss_pred ecc-----------------------------------------------------cchhhhhhhhhhhhhhhcccCCCC
Confidence 653 233455667789999999999999
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
.-|++++.||.|++|.-...-..........+.+++|.|+...++.+.+....| =.+..... ......|.+-|.++
T Consensus 117 -tgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~I--KpL~~n~k-~i~WkAHDGiiL~~ 192 (737)
T KOG1524|consen 117 -AGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISI--KPLAANSK-IIRWRAHDGLVLSL 192 (737)
T ss_pred -ceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEE--eecccccc-eeEEeccCcEEEEe
Confidence 677899999999999843322222233456788999999999887776554433 33333222 23455899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceee---------------------------eeccCCcCcEEEEEEcCCCCEEE
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGGRSRE---------------------------IYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~---------------------------~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.|++..+++++|+.|-..++||........ .+.....+.|..++||+||..++
T Consensus 193 ~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 193 SWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred ecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceee
Confidence 999999999999999999999975322110 01222335677777777777777
Q ss_pred EeeCCCcEEE
Q 012994 349 SGSDDTNLRL 358 (452)
Q Consensus 349 s~~~dg~i~i 358 (452)
.|+..|.+.+
T Consensus 273 ~gt~~G~v~~ 282 (737)
T KOG1524|consen 273 CGTSTGQLIV 282 (737)
T ss_pred ccccCceEEE
Confidence 7777776654
No 224
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=8.4e-14 Score=123.77 Aligned_cols=270 Identities=13% Similarity=0.156 Sum_probs=165.7
Q ss_pred hhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe-CC
Q 012994 52 KIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TD 130 (452)
Q Consensus 52 ~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~d 130 (452)
+..+...+..+......-..+.|+||| +++++++.||.|.++|+.+++.+.++.. .....++++++||++++++. .+
T Consensus 22 D~~t~~~~~~i~~~~~~h~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~ 99 (369)
T PF02239_consen 22 DGATNKVVARIPTGGAPHAGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYEP 99 (369)
T ss_dssp ETTT-SEEEEEE-STTEEEEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEET
T ss_pred ECCCCeEEEEEcCCCCceeEEEecCCC-CEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecCC
Confidence 334456667776554444557899999 8899999999999999999999999875 34567899999999988765 58
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-C--CeEEEEeCCCCCccee-cccCCCce
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-G--AQVDIWNHNRSQPINS-FQWGTDTV 206 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i~i~d~~~~~~~~~-~~~~~~~i 206 (452)
+.+.++|..+.+.+............ ....+.++..++....++.. - +.+.+.|....+.+.. ........
T Consensus 100 ~~v~v~D~~tle~v~~I~~~~~~~~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 100 GTVSVIDAETLEPVKTIPTGGMPVDG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp TEEEEEETTT--EEEEEE--EE-TTT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred CceeEeccccccceeecccccccccc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 99999999877543322111100000 22345667777777755544 2 5677888777654432 22234567
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceE---------------------------------------------
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK--------------------------------------------- 241 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------------------------------------- 241 (452)
....|.|++..++++...++.|-++|..+.+....
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 78999998855556566677888888665433222
Q ss_pred ----------EEeecccceEEEccCCCceEEe---ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe
Q 012994 242 ----------VIMRTKSNSISWNPMEPMNFTA---ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 242 ----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 308 (452)
+...+...-+..+|+++++.+. +.....+.++|.++.+....+..+....+..+.|+++|+.+..+.
T Consensus 255 d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~ 334 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSV 334 (369)
T ss_dssp TTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEE
T ss_pred hhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEE
Confidence 1112222344567888887776 556789999999988554444333334589999999999766555
Q ss_pred CC--CeEEEEECCCCceeeeec
Q 012994 309 YD--RTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 309 ~d--g~i~iwd~~~~~~~~~~~ 328 (452)
.+ |.|.+||..+.+....+.
T Consensus 335 ~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 335 WDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp E--TTEEEEEETTTTEEEEEEE
T ss_pred ecCCCEEEEEECCCcEEEEEEE
Confidence 43 469999999988876664
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=5e-16 Score=126.38 Aligned_cols=231 Identities=14% Similarity=0.154 Sum_probs=163.8
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeC
Q 012994 114 GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNH 190 (452)
Q Consensus 114 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~ 190 (452)
-.+|||+|+++|+++.- .+.|-|..+-+.... +..-..+.-+.|..+..++.++- +.|.+|++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql-------------f~cldki~yieW~ads~~ilC~~yk~~~vqvwsl 78 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL-------------FLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSL 78 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH-------------HHHHHHhhheeeeccceeeeeeeeccceEEEEEe
Confidence 36899999999999865 788888766543221 11123344566777777776664 57999999
Q ss_pred CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeE
Q 012994 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNC 270 (452)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (452)
...+-...+......+.+++|+|+|..+|.+..-|-.|.+|.+.+.+....-........++|+|++.+..+....|..-
T Consensus 79 ~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 79 VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKD 158 (447)
T ss_pred ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHH
Confidence 99888888888889999999999998888899999999999999887776666667778999999999876665554321
Q ss_pred E--EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 271 Y--SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 271 ~--~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
+ +..... -.....+.-.+-..+++.|+|||+.||+- |---...+..++.+ -++..++|+|.+++|+
T Consensus 159 yv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg~~laVw---------d~~Leykv~aYe~~--lG~k~v~wsP~~qfla 226 (447)
T KOG4497|consen 159 YVQISSCKA-WILLKEFKLDTIDLTGIEWSPDGNWLAVW---------DNVLEYKVYAYERG--LGLKFVEWSPCNQFLA 226 (447)
T ss_pred HHHHHhhHH-HHHHHhcCCCcccccCceECCCCcEEEEe---------cchhhheeeeeeec--cceeEEEeccccceEE
Confidence 1 110000 01111122334457889999999988754 32211111122222 4588999999999999
Q ss_pred EeeCCCcEEEeecccccccccC
Q 012994 349 SGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 349 s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.|+.|+.++|.+--+.+..+.+
T Consensus 227 vGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 227 VGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred eeccchhhhhhceeeeeehhhh
Confidence 9999999999887777666544
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.65 E-value=4.9e-14 Score=115.64 Aligned_cols=277 Identities=17% Similarity=0.254 Sum_probs=179.9
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-----eEEEeecCC------------CCeeEEEEccCCC--eEE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQ------------GAVRGLTVSTDGR--ILV 125 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~~--~l~ 125 (452)
-.+-|.++.|...| .+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++
T Consensus 24 eadiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 35679999999999 999999999999999643221 233344443 4688999998654 566
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee---cCCCCeEEEeCCeEEEEeCCCCCcceec-cc
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH---QWEGDLFATAGAQVDIWNHNRSQPINSF-QW 201 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~i~d~~~~~~~~~~-~~ 201 (452)
..+.|.+|++|.+................ ....+.++.. .+....+. ..+.+.+ ..
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~-------~~~~~~~lr~p~~~~~~~~ve-------------a~prRv~aNa 162 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEG-------PPGTITSLRLPVEGRHDLEVE-------------ASPRRVYANA 162 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccC-------CCCccceeeceeeccccceee-------------eeeeeecccc
Confidence 77889999999986554322100000000 0111111100 00000000 0112222 34
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---------ecccceEEEccCCCceEEeecCCCeEEE
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---------RTKSNSISWNPMEPMNFTAANEDCNCYS 272 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (452)
|.-.|+++.++.+.. .+++ ..|-.|.+|.+.-......+.. ..-+++..|+|....+++..++.|.|++
T Consensus 163 HtyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 778899999999874 4444 4688999999876554433321 2235788899999999999999999999
Q ss_pred EeCCCcccc---------------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeeeccCC-----
Q 012994 273 YDSRKLDEA---------------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKR----- 331 (452)
Q Consensus 273 ~d~~~~~~~---------------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~----- 331 (452)
.|++..... ...+.+-...|.++.|+++|+|+++-+. -+|++||+.. .+++.++..+.
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 999843111 1112233456889999999999998764 5799999953 34444432221
Q ss_pred ---------cCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 332 ---------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 332 ---------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
.-.-..++|+.++.+++||+....+++++...|.
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 1123468999999999999999999999965553
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=8.2e-13 Score=115.56 Aligned_cols=290 Identities=12% Similarity=0.164 Sum_probs=191.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-----eCC-----CcEEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-----GTD-----CTVKL 135 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-----~~d-----g~v~i 135 (452)
...++..+++++| +++|.+ .+..+.|++..++..+.+...- .++++.|+|-+.+|.+- ..+ -.+.+
T Consensus 34 ~~~~~v~~~S~~G-~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v 109 (566)
T KOG2315|consen 34 SRPCNVFAYSNNG-RLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLV 109 (566)
T ss_pred CCcceeEEEcCCC-cEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceee
Confidence 3347788899987 666554 4678999999888644444322 78999999999988763 122 34679
Q ss_pred EeCCCCCCCCCCCCCCCC----------------------------CCCeeEEEecCCeeeeeecCCC--CeEEEe----
Q 012994 136 WNVPVATLTDSDDSTDNS----------------------------SEPLAVYVWKNSFWAVDHQWEG--DLFATA---- 181 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---- 181 (452)
|++.++.....+...... ........+...+..+.++|.+ ..+++-
T Consensus 110 ~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 110 YNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 999874333222111000 1111112224456667777763 233332
Q ss_pred C---CeEEEEeCCCCCcceec---ccCCCceEEEEECCCCCcEEEEEecC-----------CeEEEEEccCCCCceEEEe
Q 012994 182 G---AQVDIWNHNRSQPINSF---QWGTDTVISVRFNPAEPNVLATTASD-----------RSITLYDLRMSSPARKVIM 244 (452)
Q Consensus 182 ~---~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~ 244 (452)
+ +.++||.+.....-..+ ......-..+.|++.+..+|+..+.| .++++.++........+..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 1 35888887633221111 11123344678888776666655432 3678888875566666667
Q ss_pred ecccceEEEccCCCce-EEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC---CCeEEEEECCC
Q 012994 245 RTKSNSISWNPMEPMN-FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY---DRTIRIFQYNG 320 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~---dg~i~iwd~~~ 320 (452)
.+++.++.|+|++..+ ++.|-.-..+.+||++..- ++.-..++-+++-|+|.|++|+.++. -|.|-|||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 8899999999999765 4556778899999987532 22234567788999999999998875 47899999999
Q ss_pred CceeeeeccCCcCcEEEEEEcCCCCEEEEeeC------CCcEEEeeccccccc
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDASYVISGSD------DTNLRLWKAKASEQL 367 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~~~ 367 (452)
.+++..+.. ..-+-+.|+|||++++|++. |+.++||++. |..+
T Consensus 346 ~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 346 RKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred hhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 777766654 34677899999999999875 7889999985 4444
No 228
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.1e-13 Score=126.00 Aligned_cols=223 Identities=13% Similarity=0.104 Sum_probs=142.8
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCc--
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCT-- 132 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~-- 132 (452)
...+..|...+.+.+|+||| +.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.|+ +.+.+|.
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred cEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34566788899999999999 77766543 468999999888653 4555667788999999998775 5555555
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
|.+||+.++. ...+..+........|+
T Consensus 272 Iy~~d~~~~~-----------------------------------------------------~~~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 272 IYTMDLRSGT-----------------------------------------------------TTRLTDSPAIDTSPSYS 298 (435)
T ss_pred EEEEECCCCc-----------------------------------------------------eEEccCCCCccCceeEc
Confidence 5555654432 11122233345567899
Q ss_pred CCCCcEEEEEecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC--CeEEEEeCCCccccceeeeCc
Q 012994 213 PAEPNVLATTASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED--CNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 213 ~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~ 288 (452)
|++..++++...+| .|.++|+..+................|+|++..++++.... ..+.++|....... ... .
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~--~lt-~ 375 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER--ILT-S 375 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE--ecc-C
Confidence 98854444443444 57777876554433222233455688999999887776543 46788887543321 111 2
Q ss_pred ccceEEEEEcCCCCEEEEEeCC------CeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 289 ESAVMDIDYSPTGREFVTGSYD------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 289 ~~~v~~~~~s~~g~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
...+..+.|+|||+.|+..+.+ ..+.++|+..+... .+.. .+.+...+|+|
T Consensus 376 ~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~~--~~~~~~p~Wsp 432 (435)
T PRK05137 376 GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVPT--PGDASDPAWSP 432 (435)
T ss_pred CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-EccC--CCCccCcccCC
Confidence 2246778999999988765543 35888888766553 2222 23466777876
No 229
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.7e-13 Score=125.74 Aligned_cols=221 Identities=10% Similarity=0.065 Sum_probs=138.2
Q ss_pred ccccccccEEEEEeCCCCcceEEEee---CCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCC--cEE
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGS---MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDC--TVK 134 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~---~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg--~v~ 134 (452)
.+..+...+.+.+|+||| +.|+..+ .+..|.+|++.+++... +....+.+..+.|+|||+.|+.. +.+| .|.
T Consensus 193 ~lt~~~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EeecCCCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 344456688999999999 7676543 24579999998876433 22233345578999999988765 3344 366
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
+||+.++.. ..+..+...+....|+|+
T Consensus 271 ~~d~~tg~~-----------------------------------------------------~~lt~~~~~~~~~~wSPD 297 (429)
T PRK03629 271 VMDLASGQI-----------------------------------------------------RQVTDGRSNNTEPTWFPD 297 (429)
T ss_pred EEECCCCCE-----------------------------------------------------EEccCCCCCcCceEECCC
Confidence 677654421 111112334567899999
Q ss_pred CCcEEEEEecCCeEEEE--EccCCCCceEEEe-ecccceEEEccCCCceEEeecCC--CeEEEEeCCCccccceeeeCcc
Q 012994 215 EPNVLATTASDRSITLY--DLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANED--CNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
+..++++...+|...+| |+.++.. ..+.. ........|+|++..+++++..+ ..+++||+.+..... ....
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-- 373 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-- 373 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC--
Confidence 85444444444555555 5554433 23322 23345788999999887776554 457888887654221 1111
Q ss_pred cceEEEEEcCCCCEEEEEeCCCe---EEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRT---IRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
.......|+|||++|+.++.++. +.++++..+. ...+.. +.+.+...+|+|
T Consensus 374 ~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~l~~-~~~~~~~p~Wsp 427 (429)
T PRK03629 374 FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPA-TDGQVKFPAWSP 427 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC-eEECcc-CCCCcCCcccCC
Confidence 22346789999999999887764 6778885443 333333 346788889987
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=3.3e-12 Score=113.97 Aligned_cols=272 Identities=17% Similarity=0.218 Sum_probs=177.3
Q ss_pred EEEeeCC----CcEEEEeC--CCCce--EEEeecCCCCeeEEEEccCCCeEEEEeC----CCcEEEEeCCCC--CCCCCC
Q 012994 82 FFSGSMD----GDIRLWDI--ANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCGT----DCTVKLWNVPVA--TLTDSD 147 (452)
Q Consensus 82 l~tg~~d----g~i~iwd~--~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~----dg~v~iwd~~~~--~~~~~~ 147 (452)
++.|+.. +.|.+|++ .+++. +..+. -......++++|++++|+++.. +|.|..|++... .+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L---- 76 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTL---- 76 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEE----
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCccee----
Confidence 4556655 68999888 44443 22222 3445677899999999999876 578999988653 11
Q ss_pred CCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCC-Cccee---c----------ccCCCceEEE
Q 012994 148 DSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS-QPINS---F----------QWGTDTVISV 209 (452)
Q Consensus 148 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~-~~~~~---~----------~~~~~~i~~~ 209 (452)
..+.... .......+++++++.+++++. +.+.++++... ..... + ........++
T Consensus 77 -------~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 77 -------TLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp -------EEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE
T ss_pred -------EEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeE
Confidence 1222222 344556789999999988874 78999999874 22221 1 1123457889
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCC-c-e--EEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCcc----
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSP-A-R--KVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD---- 279 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~-~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---- 279 (452)
.++|++..++++.-....|.+|++..... + . .+. .......+.|+|++..++++...++.|.+++.....
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 99999855555555567899999977652 2 1 111 234567899999999999999999999999887211
Q ss_pred ccceeee---C--cccceEEEEEcCCCCEEEEEe-CCCeEEEEECC--CCceee--eeccCCcCcEEEEEEcCCCCEEEE
Q 012994 280 EAKCVHM---G--HESAVMDIDYSPTGREFVTGS-YDRTIRIFQYN--GGRSRE--IYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 280 ~~~~~~~---~--~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~--~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
....... + .......++++|||++|+++. .++.|.+|++. ++.... ..... ......++++|+|++|++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEE
T ss_pred EEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEE
Confidence 1111111 1 112577899999999987765 46789999994 344322 22222 245899999999999988
Q ss_pred ee-CCCcEEEeecc--cccc
Q 012994 350 GS-DDTNLRLWKAK--ASEQ 366 (452)
Q Consensus 350 ~~-~dg~i~iw~~~--~~~~ 366 (452)
++ .++.|.+|++. +|.+
T Consensus 309 a~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EETTTTEEEEEEEETTTTEE
T ss_pred EecCCCeEEEEEEeCCCCcE
Confidence 76 56789999874 5544
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=7.6e-14 Score=116.47 Aligned_cols=230 Identities=16% Similarity=0.233 Sum_probs=166.3
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEccCCC-eEEEEeCC--CcEEEE
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGAVRGLTVSTDGR-ILVSCGTD--CTVKLW 136 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~d--g~v~iw 136 (452)
+.+++|..++... ..|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++... .+++|+.. ..+.+|
T Consensus 103 l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 103 LGTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred cccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3455666666553 468889999999999987443 33344433 5677787777444 55668888 889999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC-CcceecccCCCceEEEEECC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~ 213 (452)
|++..+.+..........-.+....|...+.-+.-++ ...|+++. +.+++||...+ .|+..+.....+++++...|
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p 257 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP 257 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC
Confidence 9988855555444444344445555544443333333 56666665 68999999865 57888888889999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
.+ +++++|..-|.+..||++.+..... .+.+..+.|.
T Consensus 258 ~g-n~Iy~gn~~g~l~~FD~r~~kl~g~------------------------------------------~~kg~tGsir 294 (412)
T KOG3881|consen 258 SG-NFIYTGNTKGQLAKFDLRGGKLLGC------------------------------------------GLKGITGSIR 294 (412)
T ss_pred CC-cEEEEecccchhheecccCceeecc------------------------------------------ccCCccCCcc
Confidence 88 8899999999999999987764432 2336678899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
++..+|.+++|++++-|..|+|+|+.+.+++...... ..++++.+.++
T Consensus 295 sih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK--s~lt~il~~~~ 342 (412)
T KOG3881|consen 295 SIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK--SRLTFILLRDD 342 (412)
T ss_pred eEEEcCCCceEEeeccceeEEEeecccchhhhhhhhh--ccccEEEecCC
Confidence 9999999999999999999999999996665443332 45777777654
No 232
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.5e-14 Score=114.37 Aligned_cols=270 Identities=15% Similarity=0.136 Sum_probs=169.6
Q ss_pred ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
.+...+++|.+.|+++.|..++ +|++|..-|.|++|++.+......+. ......+..+..-|++. +.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r-----------~~g~~~it~lq~~p~d~-l~ 71 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIR-----------LFGRLFITNLQSIPNDS-LD 71 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhh-----------hhccceeeceeecCCcc-hh
Confidence 4566778999999999998776 58999999999999998775432222 12233445555556533 33
Q ss_pred EeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC-eEEEEEcc---------CCCCceEEEe---
Q 012994 180 TAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLR---------MSSPARKVIM--- 244 (452)
Q Consensus 180 ~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~---------~~~~~~~~~~--- 244 (452)
+-+ ..+.+|++..+..+.. |.-.++++.|.+.. +...+... .+-.|+-+ .+...+....
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred hcCCCceEEEEEccCcceEEE---eeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 333 4688999877543322 22233334443311 11111111 11111111 1111111111
Q ss_pred ----ecccceEEEc--cCCCceEEeecCCCeEEEEeCCCcccc---------ceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 245 ----RTKSNSISWN--PMEPMNFTAANEDCNCYSYDSRKLDEA---------KCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 245 ----~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~d~~~~~~~---------~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
.+.+.+..+. .....++++|.++|.+.+||+...... ......|..+|.++.|.+.-..=++|+.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 1122233322 223456788999999999999875322 2223378899999999885555577888
Q ss_pred CCeEEEEECCCC--ce-eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHH
Q 012994 310 DRTIRIFQYNGG--RS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKN 386 (452)
Q Consensus 310 dg~i~iwd~~~~--~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (452)
+..+..|+++.. .+ +.....-....|..+..-||++.++|+|.||.|+||+.++.+.++.+.
T Consensus 226 ~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk--------------- 290 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK--------------- 290 (323)
T ss_pred cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh---------------
Confidence 888999988753 21 111122222568999999999999999999999999999999988774
Q ss_pred hhccCccccccccCCCCCh
Q 012994 387 RYKHLPEIKRIVRHRHLPK 405 (452)
Q Consensus 387 ~~~~~~~~~~~~~~~~~p~ 405 (452)
-|...++.++|+|.-+.
T Consensus 291 --yHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 291 --YHSAGVNAVAFSPDCEL 307 (323)
T ss_pred --hhhcceeEEEeCCCCch
Confidence 56688999999999663
No 233
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.2e-13 Score=116.61 Aligned_cols=182 Identities=12% Similarity=0.146 Sum_probs=131.0
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 285 (452)
.+++|+.++ ..+++|+.||++++|+..+. .......++..+..+.|+|++..++.++.. ..++|+.++.......-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d--~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD--SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC--ceEEEEeccCchhhhcC
Confidence 789999988 79999999999999995444 445555678889999999999875555555 89999998873332222
Q ss_pred -eCcccceEEEEEcCCC---C--EEEEEeCCCeEEEEECCCCce----eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 286 -MGHESAVMDIDYSPTG---R--EFVTGSYDRTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 286 -~~~~~~v~~~~~s~~g---~--~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
.........+.|+.|+ . .++.-..-+.|+.||+..... ...........|++++.|+||++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 2233446677888776 2 333334455677776653322 11111222357999999999999999999999
Q ss_pred EEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 356 LRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 356 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
|.|++..+-+.+..++. .|...|+.+.|.|......
T Consensus 305 Vai~~~~~lq~~~~vk~----------------aH~~~VT~ltF~Pdsr~~~ 340 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE----------------AHLGFVTGLTFSPDSRYLA 340 (398)
T ss_pred EEEEEeceeeeeEeehh----------------hheeeeeeEEEcCCcCccc
Confidence 99999998888766532 7788899999999755443
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.2e-13 Score=119.27 Aligned_cols=250 Identities=12% Similarity=0.185 Sum_probs=161.8
Q ss_pred cCCCCeeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeE
Q 012994 107 GHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQV 185 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (452)
.|...-+.|..+|||+|+ +||..--.|++||+....+....... ...+......... ....++..+..|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD---ae~V~feiLsDD~-------SK~v~L~~DR~I 118 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD---AEVVDFEILSDDY-------SKSVFLQNDRTI 118 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc---ccceeEEEeccch-------hhheEeecCcee
Confidence 467788999999999975 56667889999999765432211100 1111111111111 111222222222
Q ss_pred EEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEee
Q 012994 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 264 (452)
.+...-... ..+. -...-.+++++.-...+ ++++....|+-+++..+.-+..+... ...+++..++... ++++|
T Consensus 119 efHak~G~h--y~~R-IP~~GRDm~y~~~scDl-y~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~G 193 (703)
T KOG2321|consen 119 EFHAKYGRH--YRTR-IPKFGRDMKYHKPSCDL-YLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACG 193 (703)
T ss_pred eehhhcCee--eeee-cCcCCccccccCCCccE-EEeecCcceEEEEccccccccccccccccceeeeecCccc-eEEec
Confidence 221110000 0000 02223445555444344 45555667889999999988888776 5567777776554 58899
Q ss_pred cCCCeEEEEeCCCccccceeee-----Cccc-----ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCc
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHM-----GHES-----AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 334 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~-----~~~~-----~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 334 (452)
+.+|.+..||.+.......+.. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-.....-+
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~p 273 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELP 273 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccc
Confidence 9999999999987654433322 2222 49999999999999999999999999999998887776666678
Q ss_pred EEEEEEcCC--CCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 335 VFCVKFSCD--ASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 335 v~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
|..+.|.+. +..|+|. +...++|||-.+|+....+.+
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccCCceeeccc
Confidence 999999775 4455554 456899999999999887754
No 235
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.60 E-value=1.1e-11 Score=107.58 Aligned_cols=267 Identities=10% Similarity=0.057 Sum_probs=170.2
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC----------CCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT----------DCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
++|.+.|..+++.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+.+..........+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~-- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL-- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--
Confidence 899999999999988887443333 34 9999998887765 789999999988765544432211100
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
.......++++++|++++... ..+.++|+.+++.+..+.... ...-...++.. .+ +-+.||......+.
T Consensus 103 ---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~--~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 103 ---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF--MHCRDGSLAKVGYG 175 (352)
T ss_pred ---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-cE--EEeecCceEEEEec
Confidence 112234688999999888654 469999999999988877532 22222222221 22 23345555554443
Q ss_pred CCCCceEEE--eecc-c----ceEEEcc-CCCceEEeecCCCeEEEEeCCCccc----cceeee-C------cccceEEE
Q 012994 235 MSSPARKVI--MRTK-S----NSISWNP-MEPMNFTAANEDCNCYSYDSRKLDE----AKCVHM-G------HESAVMDI 295 (452)
Q Consensus 235 ~~~~~~~~~--~~~~-~----~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~-~------~~~~v~~~ 295 (452)
......... .... . ..-.+.+ ++..+++ ..+ |.+++.|+..... ...... + ..+.+.-+
T Consensus 176 ~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v-s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 176 TKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP-TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred CCCceEEeeeeeecCCccccccCCceEcCCCcEEEE-ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 322211111 1000 0 0113455 5544444 444 9999999643221 111111 0 12234459
Q ss_pred EEcCCCCEEEEEe----------CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEEee-CCCcEEEeeccc
Q 012994 296 DYSPTGREFVTGS----------YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGS-DDTNLRLWKAKA 363 (452)
Q Consensus 296 ~~s~~g~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~ 363 (452)
+++|+|+.++... ..+.|.++|..+++.+..+..+ ..+..++++||++ +|++.. .++.|.+.|..+
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t 331 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET 331 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence 9999999888743 2257999999999998887766 4799999999999 777665 578899999999
Q ss_pred ccccccC
Q 012994 364 SEQLGVL 370 (452)
Q Consensus 364 ~~~~~~~ 370 (452)
++.+..+
T Consensus 332 ~k~i~~i 338 (352)
T TIGR02658 332 GKELSSV 338 (352)
T ss_pred CeEEeee
Confidence 9988776
No 236
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=2.9e-13 Score=111.98 Aligned_cols=239 Identities=13% Similarity=0.169 Sum_probs=156.6
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCe-EEEeC-CeEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL-FATAG-AQVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~i~ 186 (452)
+..+..++|++.-..++++..|-.|++||-... ............+.+++|.|.+.. ++.+. +.|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst------------~pt~Lks~sQrnvtclawRPlsaselavgCr~gIc 165 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGIC 165 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC------------CCceecchhhcceeEEEeccCCcceeeeeecceeE
Confidence 346788999997778899999999999997652 122223334567889999987653 44443 6799
Q ss_pred EEeCCCC----Cc--------ce--ecccCCCceEEEEECCCCCcEEEEEe-cCCeEEEEEccCCCCceEEE-eecccce
Q 012994 187 IWNHNRS----QP--------IN--SFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPARKVI-MRTKSNS 250 (452)
Q Consensus 187 i~d~~~~----~~--------~~--~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~~~~~~~ 250 (452)
+|..... .. .+ ...+ ..+|++++|++++. .+++++ .|..|.|||..++..+.... ..+....
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pg-h~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl 243 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPG-HNPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL 243 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCC-CceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence 9976532 11 11 1222 36899999999984 555554 57889999999988776663 3455668
Q ss_pred EEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----e--
Q 012994 251 ISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS----R-- 324 (452)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~----~-- 324 (452)
+.|+|++.. +.+++-|+..++|.............+ .+.|...+|+|+|++|+.... |.-++|.+..... .
T Consensus 244 LkwSPdgd~-lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 244 LKWSPDGDV-LFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred EEEcCCCCE-EEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCc
Confidence 999999987 555677889999965443332222223 348999999999997654442 2234454431110 0
Q ss_pred -----ee---------eccC---CcCcEEEEEEcCCCCEEEEeeCCC--------cEEEeecccc
Q 012994 325 -----EI---------YHTK---RMQRVFCVKFSCDASYVISGSDDT--------NLRLWKAKAS 364 (452)
Q Consensus 325 -----~~---------~~~~---~~~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~~~ 364 (452)
.. ...+ ..+++.+++|.|.|.+|++.-..+ .|.+||....
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 00 0011 136789999999999999865433 3566766543
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.8e-13 Score=124.89 Aligned_cols=222 Identities=15% Similarity=0.110 Sum_probs=142.6
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCC--c
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDC--T 132 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~ 132 (452)
...+..|...+.+.+|+|+| +.|+..+. +..|.+||+.+++... +..+.+...++.|+|||+.|+ +.+.+| .
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred ceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 34456677789999999999 77776653 3469999998876533 333455566889999998775 445555 5
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---C--eEEEEeCCCCCcceecccCCCceE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVI 207 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~ 207 (452)
|.+||+.++.... ...........+|+|+|..++..+ + .+.++++.+++... +..+.....
T Consensus 274 Iy~~d~~~g~~~~-------------lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 274 IYVMDLGSRQLTR-------------LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEECCCCCeEE-------------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 8899987764321 111122334678999999877654 2 37777877765432 222334455
Q ss_pred EEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC--CeEEEEeCCCccccce
Q 012994 208 SVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED--CNCYSYDSRKLDEAKC 283 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~ 283 (452)
..+|+|++..++++...++ .|.+||+.++... .+..........|+|++..++++.... ..+++++.... ...
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--~~~ 416 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--VRQ 416 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceE
Confidence 7899999954444433333 6899998776543 333333345678999999887776643 45777777542 222
Q ss_pred eeeCcccceEEEEEcC
Q 012994 284 VHMGHESAVMDIDYSP 299 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~ 299 (452)
....+.+.+...+|+|
T Consensus 417 ~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVSADGEVREPAWSP 432 (433)
T ss_pred EcccCCCCCCCCccCC
Confidence 2333445666777776
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=3.1e-15 Score=127.26 Aligned_cols=204 Identities=13% Similarity=0.164 Sum_probs=164.1
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDI 187 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i 187 (452)
.-.-+.+.++.+|.+|+.|+..|.|..+|..++.+. ........|..+.|-.+..+++++.. -+.|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~-------------~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yv 195 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH-------------FEINVMETVRDVTFLHNEQFFAVAQKKYVYV 195 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceee-------------eeeehhhhhhhhhhhcchHHHHhhhhceEEE
Confidence 345577999999999999999999999999887543 33334456677888888888888885 5899
Q ss_pred EeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC
Q 012994 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
||- .|..+..+.. ...|..+.|.|.. .+|++++..|.++.-|+.+++.+..+.
T Consensus 196 YD~-~GtElHClk~-~~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~------------------------ 248 (545)
T KOG1272|consen 196 YDN-NGTELHCLKR-HIRVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIR------------------------ 248 (545)
T ss_pred ecC-CCcEEeehhh-cCchhhhcccchh-heeeecccCCceEEEeechhhhhHHHH------------------------
Confidence 985 4555666665 3568889999987 788999999999999999888765543
Q ss_pred CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEE
Q 012994 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 347 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 347 (452)
...+.+..++-+|-...+-+|...|+|.+|......++..+..+. ++|.++++.++|+|+
T Consensus 249 -------------------t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~-g~V~siAv~~~G~YM 308 (545)
T KOG1272|consen 249 -------------------TGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHR-GPVSSIAVDRGGRYM 308 (545)
T ss_pred -------------------ccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcC-CCcceEEECCCCcEE
Confidence 223456667778887889999999999999999888877766655 899999999999999
Q ss_pred EEeeCCCcEEEeecccccccccCCh
Q 012994 348 ISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 348 ~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
+|.|.|..++|||+.....+.++..
T Consensus 309 aTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 309 ATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred eecccccceeEeeeccccccceeec
Confidence 9999999999999998877665543
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.2e-13 Score=124.10 Aligned_cols=223 Identities=15% Similarity=0.094 Sum_probs=138.9
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKL 135 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~i 135 (452)
..+..+.+.+.+.+|+||| +.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred eEeccCCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 3445677889999999999 777766542 359999998887543 333445677899999999876 5677888777
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEE--eCCCCCcceecccCCCceEEEE
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIW--NHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~--d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
|.++.... ................|+|+|..++..+ +...+| +..++... .+...........
T Consensus 267 y~~d~~~~-----------~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~ 334 (427)
T PRK02889 267 YTVNADGS-----------GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPR 334 (427)
T ss_pred EEEECCCC-----------CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceE
Confidence 76542210 1111111122334568999999877543 344444 55554432 2222233344678
Q ss_pred ECCCCCcEEEEEecCC---eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCe--EEEEeCCCccccceee
Q 012994 211 FNPAEPNVLATTASDR---SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCN--CYSYDSRKLDEAKCVH 285 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~ 285 (452)
|+|++ +.++..+.++ .|.+||+.++... .+..........|+|++..++++....+. +++.+... ......
T Consensus 335 ~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g--~~~~~l 410 (427)
T PRK02889 335 ISPDG-KLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG--RIKQRL 410 (427)
T ss_pred ECCCC-CEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCC--CceEEe
Confidence 99998 4555544443 6999999876543 23223334678999999998888766654 55555532 223333
Q ss_pred eCcccceEEEEEcCC
Q 012994 286 MGHESAVMDIDYSPT 300 (452)
Q Consensus 286 ~~~~~~v~~~~~s~~ 300 (452)
..+.+.+...+|+|-
T Consensus 411 ~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 411 SVQGGDVREPSWGPF 425 (427)
T ss_pred ecCCCCCCCCccCCC
Confidence 345566777788773
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.58 E-value=2.8e-11 Score=108.04 Aligned_cols=265 Identities=12% Similarity=0.179 Sum_probs=172.5
Q ss_pred cccEEEEEeCCCCcceEEEeeC----CCcEEEEeCCCC--c--eEEEeecCCCCeeEEEEccCCCeEEEEeC-CCcEEEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSM----DGDIRLWDIANR--R--TVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLW 136 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~----dg~i~iwd~~~~--~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iw 136 (452)
......++++|++ ++|++... +|.|..|++... + .+............++++|++++|+++.. +|.|.++
T Consensus 36 ~~~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEE
Confidence 3456678899998 88877765 578999988764 2 33334434456678999999999988864 8999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEE-----------ecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCc-c---ee
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYV-----------WKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP-I---NS 198 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~-~---~~ 198 (452)
++.....+. ....... ......++.++|+++++++.+ ..|.+|++..... + ..
T Consensus 115 ~l~~~g~l~---------~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~ 185 (345)
T PF10282_consen 115 PLDDDGSLG---------EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDS 185 (345)
T ss_dssp EECTTSEEE---------EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEE
T ss_pred EccCCcccc---------eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeec
Confidence 997632110 1111110 123456789999999888765 4699999877652 2 12
Q ss_pred cc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC-Cc---eEEEee-------cccceEEEccCCCceEEeecC
Q 012994 199 FQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PA---RKVIMR-------TKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 199 ~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 266 (452)
+. ........+.|+|++..++++...++.|.+|++.... .. ..+... .....+.++|+++.++++...
T Consensus 186 ~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 186 IKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp EECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred cccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence 22 2345678999999987677777789999999998322 11 112111 135678999999999999999
Q ss_pred CCeEEEEeCCCc-cccce--eeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCceeeeeccCCcCcEEEEEE
Q 012994 267 DCNCYSYDSRKL-DEAKC--VHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQY--NGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 267 ~~~i~~~d~~~~-~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
...|.+|++... ..... ...........++++|+|++|+++. .++.|.+|++ .+|.+.............|+.|
T Consensus 266 ~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 266 SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999999998432 22211 1112233478999999999998877 5678999976 4666554443233355677766
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.7e-14 Score=120.47 Aligned_cols=268 Identities=19% Similarity=0.247 Sum_probs=193.9
Q ss_pred HHhhhhhccccccc-cccccccEEEEEeCCC-CcceEEEeeCCCcEEEEeCCC-Cce--EEEeecCCCCeeEEEEccCC-
Q 012994 48 AKLEKIFARPFIGA-LDGHRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIAN-RRT--VCQYSGHQGAVRGLTVSTDG- 121 (452)
Q Consensus 48 ~~~~~~~~~~~~~~-l~~h~~~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~- 121 (452)
+-+|+......... ..||...|..-.|-|. +...+++++.||.|++=.+.. +.. ...+..|.++|.-++.-|+.
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 34666655444434 4789999999999885 336799999999999977543 322 34566799999999999954
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceeccc
Q 012994 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 201 (452)
.-|.+++.|+.+.-+|+..+.....+. .-..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~-------------------------------------------------cr~~ 276 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFV-------------------------------------------------CREA 276 (559)
T ss_pred CcccccccccceeeeeeccCCccceee-------------------------------------------------eecc
Confidence 568999999999999987663211100 0011
Q ss_pred CC---CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc------eEE-------EeecccceEEEccCCCceEEeec
Q 012994 202 GT---DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA------RKV-------IMRTKSNSISWNPMEPMNFTAAN 265 (452)
Q Consensus 202 ~~---~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 265 (452)
+. -...+++..|...+.+++|+.|-.+++||.+.-... ..+ .....++++.|+.++.. +.++.
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE-lLaSY 355 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE-LLASY 355 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc-eeeee
Confidence 11 145678899988889999999999999998754322 222 12345678888877776 44556
Q ss_pred CCCeEEEEeCCCcc------------ccceeeeCccc--ceEEEE-EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC
Q 012994 266 EDCNCYSYDSRKLD------------EAKCVHMGHES--AVMDID-YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK 330 (452)
Q Consensus 266 ~~~~i~~~d~~~~~------------~~~~~~~~~~~--~v~~~~-~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 330 (452)
.|-.|+++...... .....+.+|.. .|..+- |-|...|+++|+.=|.|.||+-.+++.+..+...
T Consensus 356 nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD 435 (559)
T KOG1334|consen 356 NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD 435 (559)
T ss_pred cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc
Confidence 67778888433211 12233567764 466665 4678899999999999999999999998888777
Q ss_pred CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 331 RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 331 ~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+ .-|+|+.-+|--..|++.|-|.-|+||...+.+.
T Consensus 436 r-~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 436 R-HVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred c-ceEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 6 4899999999999999999999999998755443
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=4.1e-12 Score=117.15 Aligned_cols=221 Identities=14% Similarity=0.140 Sum_probs=134.4
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC-C--cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCe
Q 012994 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-C--TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (452)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (452)
.|.++|...... ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++..
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~---------------------- 255 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE---------------------- 255 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE----------------------
Confidence 577778755443 4455567789999999999988876543 2 4666676544210
Q ss_pred eeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCe--EEEEEccCCCCceEEEe
Q 012994 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPARKVIM 244 (452)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~ 244 (452)
.+..+ .+......|+|++..++++.+.+|. |.++|+.++........
T Consensus 256 ----------------------------~lt~~---~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~ 304 (448)
T PRK04792 256 ----------------------------KVTSF---PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH 304 (448)
T ss_pred ----------------------------EecCC---CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC
Confidence 01111 1222357899998656666677775 77778776654332222
Q ss_pred ecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC-CC--eEEEEECC
Q 012994 245 RTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-DR--TIRIFQYN 319 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-dg--~i~iwd~~ 319 (452)
........|+|++..++++...++ .++.+|............+ ......+|+|||++|+..+. ++ .|.++|+.
T Consensus 305 ~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 305 RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECC
Confidence 334567899999998887776544 5777777654432222222 22345789999999877654 33 46667888
Q ss_pred CCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC-CCc--EEEeecccccccccC
Q 012994 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSD-DTN--LRLWKAKASEQLGVL 370 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~--i~iw~~~~~~~~~~~ 370 (452)
++......... ......|+|||++|+..+. +|. +.+++. +|.....+
T Consensus 383 ~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 383 TGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred CCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 77654332221 1224479999998876554 333 666676 44443333
No 243
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.56 E-value=1.1e-11 Score=107.29 Aligned_cols=291 Identities=15% Similarity=0.212 Sum_probs=198.1
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC-------------
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC------------- 131 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg------------- 131 (452)
-.-++..+.|||.| .+|++.... .|.+|.-.....+..+. | ..|..+.|+|+++||.+=+..+
T Consensus 31 ~~~p~~~~~~SP~G-~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPLG-TYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCcc-hheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 45688999999999 888877755 58899988777666665 3 4699999999999999876543
Q ss_pred --cEEEEeCCCCCCCCCCCCCCCC--CCC------------------eeEEE-------------ecCCeeeeeecCCCC
Q 012994 132 --TVKLWNVPVATLTDSDDSTDNS--SEP------------------LAVYV-------------WKNSFWAVDHQWEGD 176 (452)
Q Consensus 132 --~v~iwd~~~~~~~~~~~~~~~~--~~~------------------~~~~~-------------~~~~~~~~~~~~~~~ 176 (452)
.+.+||+.++.++..+...... .-+ +.+.. ....+....++|.++
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence 4999999998877665543332 110 11111 013445566666532
Q ss_pred --eEEEeC-------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe----------cCCeEEEEEccCCC
Q 012994 177 --LFATAG-------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA----------SDRSITLYDLRMSS 237 (452)
Q Consensus 177 --~~~~~~-------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~ 237 (452)
.++.-. +.+++|.+..+..+.......-.-..+.|++.|..+++-.- ....+.|++++...
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 333321 35888888876666554443344456788888754443221 13568888888555
Q ss_pred CceEEEeecccceEEEccCCCceEEe-ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC---CeE
Q 012994 238 PARKVIMRTKSNSISWNPMEPMNFTA-ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTI 313 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i 313 (452)
........+++...+|.|.+..+.++ |.....+.++|++.. . .+......=+.+.|||.+++++.++.| |.+
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni 342 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNI 342 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc--e--EEecCCcccccccccCcccEEEEecCCccccce
Confidence 54444667889999999998876554 477888999998864 2 222344455668899999999987765 679
Q ss_pred EEEECCCCceee-eeccCCcCcEEEEEEcCCCCEEEEee------CCCcEEEeecccccc
Q 012994 314 RIFQYNGGRSRE-IYHTKRMQRVFCVKFSCDASYVISGS------DDTNLRLWKAKASEQ 366 (452)
Q Consensus 314 ~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iw~~~~~~~ 366 (452)
-+||........ .+.. ...+-+.|+||++++.+.. .|..|.|||+.....
T Consensus 343 ~i~~~~~rf~~~~~~~~---~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~ 399 (561)
T COG5354 343 EIFDPAGRFKVAGAFNG---LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV 399 (561)
T ss_pred EEeccCCceEEEEEeec---CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchh
Confidence 999998765554 3333 3356678999999988765 388899999865443
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=1.8e-12 Score=120.07 Aligned_cols=214 Identities=13% Similarity=0.103 Sum_probs=139.0
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
..|.++|..... ...+..+...+....|+|||++|+.++.+ ..|.+||+.++..
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------------- 226 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------------- 226 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE----------------------
Confidence 358888875443 44455567778899999999999887654 3678888755421
Q ss_pred eeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEE
Q 012994 166 FWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVI 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~ 243 (452)
. .+..+...+.++.|+|++..++++.+.++ .|.+||+.++.......
T Consensus 227 ------------------------------~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 227 ------------------------------E-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred ------------------------------E-EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence 0 11112334456789998865655665554 48888887665333222
Q ss_pred eecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC---eEEEEEC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQY 318 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~ 318 (452)
.........|+|++..++++....+ .++++|....... ....+...+..+.|+|+|++|+.++.++ .|.+||+
T Consensus 276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence 2233446789999988777765544 6888887654322 2223445667889999999999888776 7999999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC---cEEEeec
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT---NLRLWKA 361 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~iw~~ 361 (452)
.++........ .......|+|||++|+..+.++ .+.+.+.
T Consensus 354 ~~~~~~~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 354 DGGGERVLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CCCCeEEccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 88654333222 2234568999999888776654 3444443
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=9.6e-12 Score=115.23 Aligned_cols=214 Identities=11% Similarity=0.078 Sum_probs=135.2
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCe
Q 012994 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (452)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (452)
.|.++|...+.. ..+..+...+....|+|||+.|+..+.+ ..|.+||+.++..
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~----------------------- 235 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR----------------------- 235 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-----------------------
Confidence 477888765543 4455577789999999999998876643 3577777755421
Q ss_pred eeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEEe
Q 012994 167 WAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIM 244 (452)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~ 244 (452)
. .+....+.+....|+|++..++++...+| .|.+||+.++........
T Consensus 236 -----------------------------~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~ 285 (430)
T PRK00178 236 -----------------------------E-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH 285 (430)
T ss_pred -----------------------------E-EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC
Confidence 0 11111223345789998855555665555 578888887654332222
Q ss_pred ecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC-C--eEEEEECC
Q 012994 245 RTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-R--TIRIFQYN 319 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-g--~i~iwd~~ 319 (452)
........|+|++..++++...++ .++.+++...........+ .......|+|||++|+..+.+ + .|.+||+.
T Consensus 286 ~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~ 363 (430)
T PRK00178 286 PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQ 363 (430)
T ss_pred CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECC
Confidence 333456789999998877766544 6777787654432222212 223457899999998877643 3 58889998
Q ss_pred CCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC-C--cEEEeecc
Q 012994 320 GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-T--NLRLWKAK 362 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~iw~~~ 362 (452)
++......... ......|+|||++|+..+.+ | .|.++++.
T Consensus 364 tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 364 RGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 87654433222 12245899999998766543 3 46666664
No 246
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=1.2e-12 Score=105.76 Aligned_cols=152 Identities=21% Similarity=0.342 Sum_probs=105.9
Q ss_pred eeeecCCCCeEEEeC------------CeEEEEeCCC-CCcceeccc-CCCceEEEEECCCCCcEEEE-EecCCeEEEEE
Q 012994 168 AVDHQWEGDLFATAG------------AQVDIWNHNR-SQPINSFQW-GTDTVISVRFNPAEPNVLAT-TASDRSITLYD 232 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~------------~~i~i~d~~~-~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~-~~~dg~i~i~d 232 (452)
.+.|+++|..++... +...+|.++. ..+...+.. ..++|.+++|+|++..++++ |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 567788887665432 2355555532 234444443 34579999999998555433 44678999999
Q ss_pred ccCCCCceEEEeecccceEEEccCCCceEEeec--CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC-
Q 012994 233 LRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN--EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY- 309 (452)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~- 309 (452)
++ ...+..+. ....+.+.|+|+|..+++++. ..|.+.+||.++...... .+...++.++|||||++|++++.
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~---~~~~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST---FEHSDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec---cccCcEEEEEEcCCCCEEEEEEec
Confidence 96 44444443 456678999999999888764 357899999996554433 23345789999999999998874
Q ss_pred -----CCeEEEEECCCCceee
Q 012994 310 -----DRTIRIFQYNGGRSRE 325 (452)
Q Consensus 310 -----dg~i~iwd~~~~~~~~ 325 (452)
|+.++||++. |+.+.
T Consensus 165 ~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 165 PRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred cceeccccEEEEEec-CeEeE
Confidence 7889999986 44443
No 247
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=1.2e-12 Score=107.59 Aligned_cols=257 Identities=12% Similarity=0.206 Sum_probs=188.4
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeC-CCCceEEEee-cCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI-ANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 134 (452)
.++..+.||.+.|+....-|.. .-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++...|+.|-..|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 4567789999999999999887 78999999999999953 3444433332 2456899999999999999999999988
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
-+.+... .+.....+....|...+..+-|+-.
T Consensus 94 efs~sed------------------------------------------------fnkm~~~r~~~~h~~~v~~~if~~~ 125 (404)
T KOG1409|consen 94 EFALSED------------------------------------------------FNKMTFLKDYLAHQARVSAIVFSLT 125 (404)
T ss_pred EEEhhhh------------------------------------------------hhhcchhhhhhhhhcceeeEEecCC
Confidence 8876322 1233345555667888888888765
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCC-ccccceeeeCcccceE
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRK-LDEAKCVHMGHESAVM 293 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~v~ 293 (452)
. ..+++.+.|..+.-.-.+.+..+..+..........+.-. ....|...+.+....+.. .-.+...+.+|.+.++
T Consensus 126 ~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~ 201 (404)
T KOG1409|consen 126 H-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVT 201 (404)
T ss_pred c-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceE
Confidence 5 6778888888776666666655554444333332222221 344455555554443322 2234556679999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+++|.|....|++|..|..+.+||+...+-......+|...|..+..-+--+.+++++.||.|.+|+++....
T Consensus 202 ~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 202 CLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred EEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 9999999999999999999999999877766666667778899998888888999999999999999986544
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.51 E-value=5.1e-12 Score=101.83 Aligned_cols=270 Identities=13% Similarity=0.152 Sum_probs=178.2
Q ss_pred CCCcEEEEeCCCCceEE--Ee-ecCCCCeeEEEEcc---CCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 87 MDGDIRLWDIANRRTVC--QY-SGHQGAVRGLTVST---DGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 87 ~dg~i~iwd~~~~~~~~--~~-~~h~~~v~~l~~~~---~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..|.+.+|++...+... .+ ....+.+..|.|.. +|. .|+-+-.+|.|.++..........+... ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l-------s~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL-------SS 116 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc-------ch
Confidence 34778899887665433 11 22345678888864 455 5666778899999987543222111111 00
Q ss_pred EEecC-CeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc--ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc
Q 012994 160 YVWKN-SFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP--INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 160 ~~~~~-~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
..... ...++.+++.+.-++++. |++.+.+...... ++..+.|.-....+.|+...++++.+|+.|+.+..||++
T Consensus 117 ~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R 196 (339)
T KOG0280|consen 117 KKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIR 196 (339)
T ss_pred hhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEec
Confidence 00011 245678888887777775 5666555554433 447888999999999999999999999999999999999
Q ss_pred CCC-Cce--EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC--CCEEEEEeC
Q 012994 235 MSS-PAR--KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT--GREFVTGSY 309 (452)
Q Consensus 235 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~ 309 (452)
..+ .+. ...+...+.++.-+|..+..+++|+.|..|++||.|+..++...- .-.+.|+.+.++|. +..|+++-.
T Consensus 197 ~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 197 IPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred CCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHh
Confidence 443 221 223456677888899999999999999999999999877765433 33478999999994 344555555
Q ss_pred CCeEEEEECCCCcee----eeeccCCcCcEEEEEEcCCCCEEEEee-CCCcEE-Eeeccccc
Q 012994 310 DRTIRIFQYNGGRSR----EIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLR-LWKAKASE 365 (452)
Q Consensus 310 dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~-iw~~~~~~ 365 (452)
+| ++|-+.+.+... ......|.+-...-.|.....+|+|++ .|..++ +|-.-++.
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 55 788887765432 122333434455556644445678754 466644 77655543
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.49 E-value=7.1e-12 Score=103.19 Aligned_cols=278 Identities=15% Similarity=0.237 Sum_probs=173.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCC----CCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA----NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~----~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
..+++++.+.+.. ..|+.|-..|++.-+.+. .....+.+..|...|..+-|+-...++++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 5689999999997 899999999999988764 33455667789999999999998899999999977654444444
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEE--EeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDI--WNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
..... +........+.+.-. +...++ +.+.. ...+...++..+.+|.+.+.++.|.+.. .
T Consensus 147 ~~lg~-------------Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~ 210 (404)
T KOG1409|consen 147 NRLGG-------------YNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-R 210 (404)
T ss_pred Ccccc-------------eEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-c
Confidence 32211 111111111111111 222222 33333 3345566788999999999999999976 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---------
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--------- 286 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------- 286 (452)
++++|..|..+.+||+-..+-..... +...+..+... .-...+.+++.||.|.+|+............
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~-~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA-QHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh-hhheeeeeccCCCeEEEEeccceeecCccccccchhhhhC
Confidence 99999999999999996554433222 22223333222 2234578899999999999876543221110
Q ss_pred -------------------Cc----c-cceEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCceeeeeccCCcCcE
Q 012994 287 -------------------GH----E-SAVMDIDYSPTGREFVTGSYDRTIRIFQYN-------GGRSREIYHTKRMQRV 335 (452)
Q Consensus 287 -------------------~~----~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~v 335 (452)
.| - ..+...+-+ ......+-+..-.+++-|.- +..++..++..+ ..|
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s-~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~-tgI 367 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS-NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIK-TGI 367 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc-CccccccccceeEEEEecccchhhhcCCCCccccccccc-cce
Confidence 00 0 011111111 11111222222234444321 123344444444 579
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+.+.+...-.+|+|+|.|..|+|||+.+
T Consensus 368 tamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 368 TAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred eEEEhhhhccceeecCCceEEEEEechh
Confidence 9999998888999999999999999864
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=4.2e-11 Score=109.54 Aligned_cols=160 Identities=13% Similarity=0.163 Sum_probs=100.1
Q ss_pred eEEEEECCCCCcEEEEEecCC----eEEEEEccCC--CCceEEEee--cccceEEEccCCCceEEeecCCC--eEEEEeC
Q 012994 206 VISVRFNPAEPNVLATTASDR----SITLYDLRMS--SPARKVIMR--TKSNSISWNPMEPMNFTAANEDC--NCYSYDS 275 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~ 275 (452)
.....|+|+|..++++...+| .+.+|++..+ .....+... .......|+|++..++.+...++ .+++++.
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 345688888855554443333 3444666543 122222222 23356899999998887776555 4555555
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
.........+..+...+....|||||+.|+..+.+ ..|.+||+.+++....... ...+....|+|||++|+....
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~--~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS--PENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC--CCCccceEECCCCCEEEEEEC
Confidence 43222222233344566788999999998876543 4699999998876554432 235678999999998775332
Q ss_pred ---CCcEEEeeccccccc
Q 012994 353 ---DTNLRLWKAKASEQL 367 (452)
Q Consensus 353 ---dg~i~iw~~~~~~~~ 367 (452)
...|.+|++..++..
T Consensus 391 ~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 391 NSNESELYLISLITKKTR 408 (428)
T ss_pred CCCCceEEEEECCCCCEE
Confidence 356888888776543
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.1e-11 Score=113.03 Aligned_cols=220 Identities=15% Similarity=0.072 Sum_probs=136.3
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCC--cEE
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDC--TVK 134 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg--~v~ 134 (452)
.+..|...+...+|+|+| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+ +.+.+| .|.
T Consensus 193 ~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 193 TLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY 270 (430)
T ss_pred EEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence 445567788999999999 777655433 369999998886543 333344566789999999887 444555 577
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---C--eEEEEeCCCCCcceecccCCCceEEE
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
+||+.++..... ...........|+|+|..++... + .+.++++.+++.... ..........
T Consensus 271 ~~d~~~~~~~~l-------------t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~ 336 (430)
T PRK00178 271 VMDLASRQLSRV-------------TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARP 336 (430)
T ss_pred EEECCCCCeEEc-------------ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccce
Confidence 788876643211 11122334567999998776543 2 488888877764332 2222333457
Q ss_pred EECCCCCcEEEEEecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceee
Q 012994 210 RFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~ 285 (452)
.|+|++..++++...++ .|.+||+.++.. ..+..........|+|++..++.+...++ .+++++.... ....+
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l 413 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPL 413 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEEC
Confidence 89999855444444444 578889877653 23322223345689999998888776554 4566666432 22222
Q ss_pred eCcccceEEEEEcC
Q 012994 286 MGHESAVMDIDYSP 299 (452)
Q Consensus 286 ~~~~~~v~~~~~s~ 299 (452)
..+.+.+...+|+|
T Consensus 414 ~~~~g~~~~p~ws~ 427 (430)
T PRK00178 414 PTAQGEVREPSWSP 427 (430)
T ss_pred cCCCCCcCCCccCC
Confidence 23444566677776
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=4.8e-10 Score=93.69 Aligned_cols=264 Identities=15% Similarity=0.145 Sum_probs=176.1
Q ss_pred CCcEEEEeCCCCce---EEEeecCCCCeeEEEEccCCCeEEEEeCC---CcEEEEeCCC--CCCCCCCCCCCCCCCCeeE
Q 012994 88 DGDIRLWDIANRRT---VCQYSGHQGAVRGLTVSTDGRILVSCGTD---CTVKLWNVPV--ATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 88 dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~ 159 (452)
+.-|++|++.+..- ...+-.+.+..+-|+|+|++++|.++..+ |.|..|.++. |.+......
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~---------- 84 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ---------- 84 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc----------
Confidence 46799999874321 12233467788999999999999988654 7788877764 333211111
Q ss_pred EEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCC-CCccee--cccCCCc----------eEEEEECCCCCcEEEEEe
Q 012994 160 YVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNR-SQPINS--FQWGTDT----------VISVRFNPAEPNVLATTA 223 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~-~~~~~~--~~~~~~~----------i~~~~~~~~~~~~l~~~~ 223 (452)
.....+.+-+++++++++++++. |.|.++-++. |..... ...|.+. +....+.|++ +++++..
T Consensus 85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~D 163 (346)
T COG2706 85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPD 163 (346)
T ss_pred ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEee
Confidence 11122336789999999999886 6899998865 332211 1223333 7888999998 5555544
Q ss_pred -cCCeEEEEEccCCCCceE----EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---------Ccc
Q 012994 224 -SDRSITLYDLRMSSPARK----VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---------GHE 289 (452)
Q Consensus 224 -~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---------~~~ 289 (452)
.--.|.+|++..+..... +........+.|+|+++..+++.--+++|.+|...........+. ...
T Consensus 164 LG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 164 LGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred cCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 345799999986654322 234566789999999999999999999999998876421111111 223
Q ss_pred cceEEEEEcCCCCEEEEEeC-CCeEEEEECCCC--ceeeee-ccCCcCcEEEEEEcCCCCEEEEeeCC-CcEEEeecc
Q 012994 290 SAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGG--RSREIY-HTKRMQRVFCVKFSCDASYVISGSDD-TNLRLWKAK 362 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~--~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~d-g~i~iw~~~ 362 (452)
.+..+|.++|||++|.++.. ...|.+|.+... ++.... ...+........|+++|++|+++..+ ..|.+|...
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 45778999999999998764 346888877643 322221 12222347889999999999988764 468888764
No 253
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=2.3e-11 Score=112.15 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=128.4
Q ss_pred ccccEEEEEeCCCCcceEEEeeC-CC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE-EeCCCc--EEEEeC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSM-DG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCT--VKLWNV 138 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~--v~iwd~ 138 (452)
+...+.+..|+||| +.|+..+. ++ .|.+||+.+++... +....+.....+|+|||+.|+. .+.+|. |.+||+
T Consensus 216 ~~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 216 SPEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 34567789999999 66665543 33 58899998876532 2222334457899999998765 455664 455555
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcE
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (452)
.++. ...+..+........|+|++..+
T Consensus 294 ~tg~-----------------------------------------------------~~~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 294 ATKA-----------------------------------------------------LTRITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred CCCC-----------------------------------------------------eEECccCCCCccceEECCCCCEE
Confidence 4331 11122223344567899988555
Q ss_pred EEEEecCCe--EEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccceE
Q 012994 219 LATTASDRS--ITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 219 l~~~~~dg~--i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
+++...+|. |.++|+.+++.. .+.. ........|+|++..++++...++ .++.+|+.+..... .... ....
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--lt~~-~~d~ 396 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--LTST-RLDE 396 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE--ccCC-CCCC
Confidence 555544554 555566655432 2222 222345789999998877766555 56667776543221 1111 1223
Q ss_pred EEEEcCCCCEEEEEeCC-C--eEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 294 DIDYSPTGREFVTGSYD-R--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
...|+|||+.|+..+.+ | .+++++.. +.....+... .+.+...+|+|
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCC-CCCcCCCccCC
Confidence 45899999988765543 3 37777875 4444433332 24577788887
No 254
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=7.8e-10 Score=96.21 Aligned_cols=258 Identities=11% Similarity=0.097 Sum_probs=160.7
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEe-e---------CCCcEEEEeCCCCceEEEeecCC-------CCe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSG-S---------MDGDIRLWDIANRRTVCQYSGHQ-------GAV 112 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg-~---------~dg~i~iwd~~~~~~~~~~~~h~-------~~v 112 (452)
+.+..+.+.+.++..-..+-. + ++||+ +.|+++ + .+..|.+||..+.+.+..+.--. ..-
T Consensus 31 ViD~~~~~v~g~i~~G~~P~~-~-~spDg-~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~ 107 (352)
T TIGR02658 31 TIDGEAGRVLGMTDGGFLPNP-V-VASDG-SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYP 107 (352)
T ss_pred EEECCCCEEEEEEEccCCCce-e-ECCCC-CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCcc
Confidence 334445556666643333322 4 99998 666554 4 47899999999999998876322 223
Q ss_pred eEEEEccCCCeEEEEe-C-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeC
Q 012994 113 RGLTVSTDGRILVSCG-T-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (452)
..++++|||++|+... . +..|.+.|+.+++.+..... ......+..+.+..++.+.++......+
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-------------p~~~~vy~t~e~~~~~~~~Dg~~~~v~~ 174 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-------------PDCYHIFPTANDTFFMHCRDGSLAKVGY 174 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-------------CCCcEEEEecCCccEEEeecCceEEEEe
Confidence 4789999999998776 3 78999999998865544332 2222333344445555555554333322
Q ss_pred CC-CCcc-ee---cccCCCceE-EEEECC-CCCcEEEEEecCCeEEEEEccCCCCc-----eEEEee--------cccce
Q 012994 191 NR-SQPI-NS---FQWGTDTVI-SVRFNP-AEPNVLATTASDRSITLYDLRMSSPA-----RKVIMR--------TKSNS 250 (452)
Q Consensus 191 ~~-~~~~-~~---~~~~~~~i~-~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~--------~~~~~ 250 (452)
.+ ++.. .. +.....++. .-.+.+ ++ ..+.+... |.|.+.|+...... ..+... .....
T Consensus 175 d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 175 GTKGNPKIKPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred cCCCceEEeeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 22 1110 00 100000000 003345 55 55555555 99999996543322 221111 11224
Q ss_pred EEEccCCCceEEeec---------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC-EEEEEe-CCCeEEEEECC
Q 012994 251 ISWNPMEPMNFTAAN---------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS-YDRTIRIFQYN 319 (452)
Q Consensus 251 ~~~~~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~iwd~~ 319 (452)
++++++++.+++... ..+.+.++|..+.+....+..++ .+..++++|||+ +|++.. .++.|.++|..
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 899999999888542 23589999999888777766554 788999999999 777666 57889999999
Q ss_pred CCceeeee
Q 012994 320 GGRSREIY 327 (452)
Q Consensus 320 ~~~~~~~~ 327 (452)
+++.+...
T Consensus 331 t~k~i~~i 338 (352)
T TIGR02658 331 TGKELSSV 338 (352)
T ss_pred CCeEEeee
Confidence 99887776
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.45 E-value=8e-11 Score=102.17 Aligned_cols=272 Identities=17% Similarity=0.216 Sum_probs=179.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCC---------------CcEEEEeCCCCceEEEeecCCCC--ee-EEEEccCCCeEEEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMD---------------GDIRLWDIANRRTVCQYSGHQGA--VR-GLTVSTDGRILVSC 127 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~d---------------g~i~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~l~s~ 127 (452)
...|.-+.|+|.+ ++|.|-+.. +.+.+||..++..+..+..-..+ .+ -+.|+-+.+++|-.
T Consensus 71 ~~~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 4568999999998 999986543 35999999999999988766655 44 67888887776655
Q ss_pred eCCCcEEEEeCCCCCCCCCCC------------CCCC--C-----------CCCe--eEEE------------ecCCeee
Q 012994 128 GTDCTVKLWNVPVATLTDSDD------------STDN--S-----------SEPL--AVYV------------WKNSFWA 168 (452)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~------------~~~~--~-----------~~~~--~~~~------------~~~~~~~ 168 (452)
. ...+.|+++ ++....... .... . ..+. .+.. ....-..
T Consensus 150 v-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 V-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred c-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 3 346888886 222211000 0000 0 0000 0000 0111134
Q ss_pred eeecCCCCeEEEeC-------------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEE-EEecCCeEEEEEcc
Q 012994 169 VDHQWEGDLFATAG-------------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA-TTASDRSITLYDLR 234 (452)
Q Consensus 169 ~~~~~~~~~~~~~~-------------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~i~d~~ 234 (452)
+.|.+.|.++++-- ..+.++++..... .....-.++|...+|.|.+..+.+ +|..+-.+.++|++
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 56677777665421 2477888774332 222245789999999998855433 34678899999998
Q ss_pred CCCCceEEEeecccceEEEccCCCceEEeec--CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe----
Q 012994 235 MSSPARKVIMRTKSNSISWNPMEPMNFTAAN--EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---- 308 (452)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---- 308 (452)
.+ +........-+.+.|+|.+++++++|- ..|.+.+||..........+.+. ...-+.|+|||.++.+..
T Consensus 307 ~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 307 GN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred cc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcc
Confidence 77 555556677789999999999998664 46889999987654444333332 234467999999987764
Q ss_pred --CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 309 --YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 309 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
.|..|.|||+..... ...+.+.|.|.|++..+.+.++
T Consensus 383 ~~~Dn~i~l~~v~g~~~---------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 LRVDNSIKLWDVYGAKV---------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cccCcceEEEEecCchh---------hhhhhccccCCcccceeeccCC
Confidence 377899999975332 2467789999999888777665
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.44 E-value=3.1e-11 Score=111.78 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=128.5
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE-EeCCC--cE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMD---GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDC--TV 133 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg--~v 133 (452)
..+..+...+.+.+|+|+| ++|+.++.+ ..|++||+.+++... +..+.+.+.+++|+||++.|+. .+.++ .|
T Consensus 183 ~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred EEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 3444566678999999999 777766543 479999998876543 3345666778999999987764 44444 58
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---C--eEEEEeCCCCCcceecccCCCceEE
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
.+||+.++..... ...........|++++..++..+ + .|.++|+.+++. ..+..+......
T Consensus 261 ~~~d~~~~~~~~l-------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~ 326 (417)
T TIGR02800 261 YVMDLDGKQLTRL-------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCEEEC-------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccC
Confidence 8888876543211 11112223457889998776543 2 588888877654 334434556778
Q ss_pred EEECCCCCcEEEEEecCC---eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC--eEEEEeC
Q 012994 209 VRFNPAEPNVLATTASDR---SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC--NCYSYDS 275 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~ 275 (452)
..|+|++ ..++.++.++ .|.+||+.+... ..+..........|+|++..++++...++ .+++++.
T Consensus 327 ~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 327 PSWSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred eEECCCC-CEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8999998 5666666554 788888876432 22222233445689999988777766554 3444443
No 257
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=8.3e-12 Score=117.14 Aligned_cols=198 Identities=16% Similarity=0.297 Sum_probs=149.3
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
|....+.-+...++.+..++.+.+||...+........... .. -.....+..+++.-+++++. +.+.+|+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-----~~---l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-----CT---LYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-----EE---EEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 33344445667888888889999999977654433222111 00 01112234455555666665 7899999
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCe
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
....+.-..+.+|.+.|.++.++.++ .++++.+.|.++++|++.+.+...
T Consensus 162 ~~~dn~p~~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~~~----------------------------- 211 (967)
T KOG0974|consen 162 PHEDNKPIRLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREVLG----------------------------- 211 (967)
T ss_pred ccccCCcceecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccccC-----------------------------
Confidence 88554444688999999999999988 899999999999999998776543
Q ss_pred EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
....+|...|..++|+|+ .+++++.|.+.++|+.+. ..+..+..+....+..++..++...++|
T Consensus 212 -------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT 275 (967)
T KOG0974|consen 212 -------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVT 275 (967)
T ss_pred -------------cccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEe
Confidence 112289999999999998 999999999999997764 4445666666688999999999999999
Q ss_pred eeCCCcEEEeeccc
Q 012994 350 GSDDTNLRLWKAKA 363 (452)
Q Consensus 350 ~~~dg~i~iw~~~~ 363 (452)
++.||.+++|++..
T Consensus 276 ~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 276 GGNDSTLKLWDLNG 289 (967)
T ss_pred eccCcchhhhhhhc
Confidence 99999999999865
No 258
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.43 E-value=2.8e-10 Score=114.77 Aligned_cols=259 Identities=14% Similarity=0.142 Sum_probs=165.5
Q ss_pred EEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec--C------------CCCeeEEEEccCCCeEEEEeC-CCcEE
Q 012994 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--H------------QGAVRGLTVSTDGRILVSCGT-DCTVK 134 (452)
Q Consensus 70 ~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--h------------~~~v~~l~~~~~~~~l~s~~~-dg~v~ 134 (452)
..+++++.+..++++-+.++.|.+||.. +..+..+.+ . -.....|++.++++.|+.+.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3578887543677777778899999975 444443332 1 123577888888776665544 46788
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
++|+.++... .. + +.|. ...+...+.. .... .-.....++++|+
T Consensus 650 ~id~~~~~V~--------------tl------------------a-g~G~-~g~~~~gg~~-~~~~-~ln~P~gVa~dp~ 693 (1057)
T PLN02919 650 EIDFVNETVR--------------TL------------------A-GNGT-KGSDYQGGKK-GTSQ-VLNSPWDVCFEPV 693 (1057)
T ss_pred EEecCCCEEE--------------EE------------------e-ccCc-ccCCCCCChh-hhHh-hcCCCeEEEEecC
Confidence 8887554210 00 0 0000 0000000000 0000 0123457899996
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEE----------------eecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVI----------------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
++.++++.+.++.|++||..++... .+. .-.....++++|++..++++...++.|+.||..+.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg 772 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTG 772 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 6578888888999999998665322 111 01234568999999988999999999999998754
Q ss_pred ccccee------------ee--------CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC--------
Q 012994 279 DEAKCV------------HM--------GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-------- 330 (452)
Q Consensus 279 ~~~~~~------------~~--------~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------- 330 (452)
...... +. ..-....+++++++|+++++-+.++.|++||..++........+
T Consensus 773 ~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 773 GSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred cEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 321100 00 00113468999999998888889999999999887655433211
Q ss_pred ----CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 331 ----RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 331 ----~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
.......++++++|+++++-+.++.|++||+.+++.
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 113577899999999989888999999999988765
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=128.16 Aligned_cols=202 Identities=19% Similarity=0.422 Sum_probs=157.3
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
..|-..|.++.-+|.. .+.+||+.||.|++|....++.+..++ +....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2205 k~~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred ecccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 3456778899999987 889999999999999999988877764 234789999999999999999999999999974
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
.++....+.|.....++.|-. .++++
T Consensus 2282 ---------------------------------------------------pk~~~s~qchnk~~~Df~Fi~---s~~~t 2307 (2439)
T KOG1064|consen 2282 ---------------------------------------------------PKPYTSWQCHNKALSDFRFIG---SLLAT 2307 (2439)
T ss_pred ---------------------------------------------------CcceeccccCCccccceeeee---hhhhc
Confidence 123344455666667777764 34555
Q ss_pred Ee---cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 222 TA---SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 222 ~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
++ .++.+.+||....... ..+...|.+.++++++-
T Consensus 2308 ag~s~d~~n~~lwDtl~~~~~------------------------------------------s~v~~~H~~gaT~l~~~ 2345 (2439)
T KOG1064|consen 2308 AGRSSDNRNVCLWDTLLPPMN------------------------------------------SLVHTCHDGGATVLAYA 2345 (2439)
T ss_pred cccCCCCCcccchhcccCccc------------------------------------------ceeeeecCCCceEEEEc
Confidence 54 4677888885322111 11224789999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhh
Q 012994 299 PTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 374 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 374 (452)
|.-+.|++|+.+|.|++||++..+.+..+.. +. ...++++|+..|.|+||++.....+..+....
T Consensus 2346 P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2346 PKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred CcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 9999999999999999999998777665543 44 56689999999999999999998888875443
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=5e-09 Score=87.75 Aligned_cols=277 Identities=11% Similarity=0.154 Sum_probs=179.5
Q ss_pred ccccccEEEEEeCCCCcceEEEeeC---CCcEEEEeCCC--CceEE--EeecCCCCeeEEEEccCCCeEEEEeC-CCcEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIAN--RRTVC--QYSGHQGAVRGLTVSTDGRILVSCGT-DCTVK 134 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~--~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~ 134 (452)
-.+.+..+-|+|+|++ +.|+++-. +|.|.-|.++. |++.. .......+-+.+++++++++|+++.. -|.|.
T Consensus 36 v~~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 36 VAELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ccccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3467788999999998 88888754 47787777664 54322 11222234488999999999998865 58899
Q ss_pred EEeCCCC-CCCCCCCCCC-CCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecc---cCCCce
Q 012994 135 LWNVPVA-TLTDSDDSTD-NSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ---WGTDTV 206 (452)
Q Consensus 135 iwd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~---~~~~~i 206 (452)
++-+... .+........ ....+. .......+....+.|+++++++.+ ..|.+|++..++....-. ......
T Consensus 115 v~p~~~dG~l~~~v~~~~h~g~~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 115 VYPLQADGSLQPVVQVVKHTGSGPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEEcccCCccccceeeeecCCCCCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 9998653 3322211110 001111 111122366788999999999887 469999999776542221 224456
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEE----------eecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVI----------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
..|.|+|+++-..+++--+++|.+|..... .....+. .......+..+++|++++++.-....|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 889999999655556667999999998774 2222221 12344678899999998888777778888877
Q ss_pred CCccccceee---eCcccceEEEEEcCCCCEEEEEeCCC-eEEEEECC--CCceeeeeccCCcCcEEEEEEc
Q 012994 276 RKLDEAKCVH---MGHESAVMDIDYSPTGREFVTGSYDR-TIRIFQYN--GGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 276 ~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~s 341 (452)
.......... ..+......+.|+|+|++|+++..++ .|.+|..+ +|++-............||.|.
T Consensus 274 ~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 6554332222 23444578899999999999888653 58888665 4554444333333456667664
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.3e-10 Score=106.32 Aligned_cols=229 Identities=11% Similarity=0.028 Sum_probs=135.1
Q ss_pred cccccccEEEEEeCCCCcc--eEEEeeCCC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC-CC----c
Q 012994 62 LDGHRDGISCMAKNPNYLK--GFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DC----T 132 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~--~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg----~ 132 (452)
|..+...+.+-+|+|||.. ++++...+| .|.+.++.+++... +....+.....+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 3334455677799999833 223444444 57888888776433 3334455667899999998887653 23 2
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+.+|++..+. .+.................|+
T Consensus 259 ~~~~~~~~g~-------------------------------------------------~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 259 IQSFSLETGA-------------------------------------------------IGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred EEEeecccCC-------------------------------------------------CCcceEeecCCCCCcCCeEEC
Confidence 2334443220 011111111112233457899
Q ss_pred CCCCcEEEEEecCCeEEEEEc--cC-CCCceEEEe-ecccceEEEccCCCceEEeecCC--CeEEEEeCCCccccceeee
Q 012994 213 PAEPNVLATTASDRSITLYDL--RM-SSPARKVIM-RTKSNSISWNPMEPMNFTAANED--CNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~--~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~ 286 (452)
|+|..++++...+|...+|.+ .. +.....+.. ........|+|++..++.+...+ ..+++||..+...... .
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L--t 367 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL--T 367 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc--c
Confidence 998555555555676556644 32 122222322 23456789999999887776554 4789999876543222 2
Q ss_pred CcccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 287 GHESAVMDIDYSPTGREFVTGSY---DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
.....+....|+|||+.|+..+. ...|+++|+.+++....... .+.+...+|+|-.
T Consensus 368 ~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~~ 426 (428)
T PRK01029 368 TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCCC
Confidence 22335677899999998875433 35688999988776555432 2456778888753
No 262
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.9e-10 Score=108.23 Aligned_cols=146 Identities=20% Similarity=0.362 Sum_probs=117.8
Q ss_pred eCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCC
Q 012994 74 KNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS 153 (452)
Q Consensus 74 ~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (452)
++++. -++++|+.-+.|.+|+....+.-..+.+|.+.|.++.|+-||.+++++|.|.++++|++++.+..
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------- 210 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------- 210 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc---------
Confidence 45664 78999999999999998744444468899999999999999999999999999999999987532
Q ss_pred CCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCC-CceEEEEECCCCCcEEEEEecCCeEEE
Q 012994 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITL 230 (452)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~i 230 (452)
....+.+...++.+.+.++ .+++++. +.++|+.+..+ +..+..|. ..|..++..+.. ...++++.||.+++
T Consensus 211 --~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 211 --GCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKL 284 (967)
T ss_pred --CcccccccceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhh
Confidence 2466778889999999999 6666664 68999765444 33666654 468888888866 78899999999999
Q ss_pred EEccC
Q 012994 231 YDLRM 235 (452)
Q Consensus 231 ~d~~~ 235 (452)
||+..
T Consensus 285 ~~l~~ 289 (967)
T KOG0974|consen 285 WDLNG 289 (967)
T ss_pred hhhhc
Confidence 99654
No 263
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=7.4e-12 Score=101.75 Aligned_cols=269 Identities=19% Similarity=0.272 Sum_probs=170.0
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-----eEEEeecCC------------CCeeEEEEccCC--CeEE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQ------------GAVRGLTVSTDG--RILV 125 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~--~~l~ 125 (452)
-.+.|+++.|...| .||++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35679999999999 999999999999999754322 233355554 358889998754 3566
Q ss_pred EEeCCCcEEEEeCCCCCCCCC--------CCCCCC----------------CC-----CCe--eEEEecCCeeeeeecCC
Q 012994 126 SCGTDCTVKLWNVPVATLTDS--------DDSTDN----------------SS-----EPL--AVYVWKNSFWAVDHQWE 174 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~--------~~~~~~----------------~~-----~~~--~~~~~~~~~~~~~~~~~ 174 (452)
..+.|.+|++|.+....+... +..... .. .+. ....+...+.++.+..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 667899999998865422110 000000 00 011 11123445678888888
Q ss_pred CCeEEEeCC-eEEEEeCCCCCc---ceecccC-----CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee
Q 012994 175 GDLFATAGA-QVDIWNHNRSQP---INSFQWG-----TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (452)
Q Consensus 175 ~~~~~~~~~-~i~i~d~~~~~~---~~~~~~~-----~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (452)
...+++++. .|.+|++.-... +..++.| ..-|++..|+|...+++.-.+..|.|++-|++.......-.
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~-- 261 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK-- 261 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch--
Confidence 888888885 799998765332 1222222 23578888999877788888888999999988543211000
Q ss_pred cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-ee
Q 012994 246 TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR-SR 324 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-~~ 324 (452)
.++...-...-...+.+-...|..+.|+++|+++++-+. -+|++||++..+ ++
T Consensus 262 -------------------------klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pi 315 (460)
T COG5170 262 -------------------------KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPI 315 (460)
T ss_pred -------------------------hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCc
Confidence 000000000011122234567889999999999998764 579999998643 23
Q ss_pred eeeccC-----------CcCcE---EEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 325 EIYHTK-----------RMQRV---FCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 325 ~~~~~~-----------~~~~v---~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.+...+ ....| ..+.||.|.+.+.+|+..+..-|+-+.
T Consensus 316 kTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 316 KTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 332111 11222 457899999999999998888888744
No 264
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.1e-10 Score=103.52 Aligned_cols=337 Identities=15% Similarity=0.117 Sum_probs=218.4
Q ss_pred hhccccccccccccccEEEEEeCCCC-----------cceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEcc--
Q 012994 53 IFARPFIGALDGHRDGISCMAKNPNY-----------LKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVST-- 119 (452)
Q Consensus 53 ~~~~~~~~~l~~h~~~V~~~~~~~~~-----------~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~-- 119 (452)
..+.+.++.+.-|...|+.+.|.|-. .-+||++...|.|.+||...+..+..+..|..++..++|-+
T Consensus 42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence 34556778888999999999998741 13577888899999999999998889999999999999976
Q ss_pred -CC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCC----------CeeEEEecCCee--------------------
Q 012994 120 -DG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSE----------PLAVYVWKNSFW-------------------- 167 (452)
Q Consensus 120 -~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~-------------------- 167 (452)
+. ..|+.-....++.+|+..+|.............. .......++-+.
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 4566666678999999988876543332211111 011111111111
Q ss_pred ---------------------------------eeeecC--CCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 168 ---------------------------------AVDHQW--EGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 168 ---------------------------------~~~~~~--~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
.++|+| .+.++++-...+.++|++-..++.......+.+.-+.+.
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 112222 222445555667777777777776666656666667777
Q ss_pred CCCC-cEEEEEecCCeEEEEEccCCC----------------CceEE---------------------------------
Q 012994 213 PAEP-NVLATTASDRSITLYDLRMSS----------------PARKV--------------------------------- 242 (452)
Q Consensus 213 ~~~~-~~l~~~~~dg~i~i~d~~~~~----------------~~~~~--------------------------------- 242 (452)
|+.. ..|++...||.+.+|--+... ....+
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 7642 467888899999999633210 00000
Q ss_pred --E--------------------e-----------------ec----ccceE-----------EEccCCC------ceEE
Q 012994 243 --I--------------------M-----------------RT----KSNSI-----------SWNPMEP------MNFT 262 (452)
Q Consensus 243 --~--------------------~-----------------~~----~~~~~-----------~~~~~~~------~~~~ 262 (452)
. . .+ ...+. ...|.++ -+++
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 0 0 00 00000 0011111 2467
Q ss_pred eecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEE---------EeCCCeEEEEECCCCceeeee--ccCC
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT---------GSYDRTIRIFQYNGGRSREIY--HTKR 331 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s---------~~~dg~i~iwd~~~~~~~~~~--~~~~ 331 (452)
+|++.|+|.++|..+.... ..+..|...|.++.|-...+++-. |+.-+.+.+-|+++|.....- ....
T Consensus 442 vGT~sGTV~vvdvst~~v~-~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d 520 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVA-ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD 520 (1062)
T ss_pred eecCCceEEEEEecchhhh-hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCC
Confidence 8999999999999875433 344578899999999766544322 223345788899998765443 5556
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccC-CCCChhh
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH-RHLPKPI 407 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~ 407 (452)
..+|..+..|..++||+..-.|.-+-+||+++..++.. +-...+-+..+.|. |..|.+-
T Consensus 521 espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~-----------------mS~a~P~it~leWsl~~~~si~ 580 (1062)
T KOG1912|consen 521 ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRL-----------------MSLALPLITVLEWSLPKHPSIK 580 (1062)
T ss_pred cCcceeeeecccCceEEEEecccchHHHhhccchHHHH-----------------HhhcCCcEEEEeecccCCCCcc
Confidence 68999999999999999999999999999987665432 22445666777776 6666443
No 265
>PF04158 Sof1: Sof1-like domain ; InterPro: IPR007287 Sof1 is essential for cell growth and is a component of the nucleolar rRNA processing machinery [].
Probab=99.39 E-value=1.2e-12 Score=86.67 Aligned_cols=86 Identities=55% Similarity=0.953 Sum_probs=82.8
Q ss_pred cccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 012994 363 ASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASLRRTMMEAERRKAERRKAHSAPGSIVTEPV 442 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
..+.++.+.+++...++|.+.+.++|.|.++|..|+.|..+|..|+.+...+.++.++.+++|+|+++|++++.++..++
T Consensus 3 ASeklG~ls~REr~~l~Y~~~Lkekyk~~pEIrRI~rhRhvPK~I~~a~~~k~~~~~a~~RKe~nrr~hsk~~~~~~~~e 82 (88)
T PF04158_consen 3 ASEKLGVLSPRERAALEYREALKEKYKHMPEIRRIARHRHVPKAIKKAQKIKREMKEAEKRKEENRRKHSKPGAVPPKPE 82 (88)
T ss_pred cchhcCCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccee
Q 012994 443 RKRRII 448 (452)
Q Consensus 443 ~~k~~~ 448 (452)
|+|+|+
T Consensus 83 rkk~vv 88 (88)
T PF04158_consen 83 RKKHVV 88 (88)
T ss_pred cccCCC
Confidence 999985
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.5e-11 Score=107.40 Aligned_cols=265 Identities=12% Similarity=0.168 Sum_probs=177.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---------------eEEEeecCCCCeeEEEEccCCCeEEEEeCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---------------TVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 130 (452)
.....|++|+... .++|.|+.||.+++-.+.+.. .-+++.||.+.|.-+.|+.+.+.|-|...+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4568899999997 999999999999999876432 123567999999999999998999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE--eCCeEEEEeCCCCCcc-eecccCCCceE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT--AGAQVDIWNHNRSQPI-NSFQWGTDTVI 207 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~d~~~~~~~-~~~~~~~~~i~ 207 (452)
|.|.+|-+-.+..... ..-....+.+.+++|..+|..++. .+|.|.+=.++.+..- ..++ .....
T Consensus 93 GlIiVWmlykgsW~EE----------MiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~ 160 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEE----------MINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLA 160 (1189)
T ss_pred ceEEEEeeecccHHHH----------HhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhecc
Confidence 9999999977754322 112223456778899988886554 3565555544433211 1111 22344
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCCCc-----eEEE-------eecccceEEEc-------cCCCceEEeecCCC
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPA-----RKVI-------MRTKSNSISWN-------PMEPMNFTAANEDC 268 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~~~~ 268 (452)
.+.|+++. ..++.+-.+|.+.+||....-.. .... .+..+..+.|. |...-.++++..+|
T Consensus 161 hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG 239 (1189)
T KOG2041|consen 161 HVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG 239 (1189)
T ss_pred ceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence 68899987 56667778899999996542110 0011 11223344442 33344588888888
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC---------eEEEEECCCCceeeeeccCCcCcEEEEE
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---------TIRIFQYNGGRSREIYHTKRMQRVFCVK 339 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 339 (452)
.+.+....+...+..+..+ -.+..+.|+++|..||.++.+. .|.+|..- |.....+.... ..|++++
T Consensus 240 r~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg-~~It~ls 315 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPG-SCITGLS 315 (1189)
T ss_pred eehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCC-ceeeeeE
Confidence 8888766665566555444 5788999999999999988642 46666543 45555554443 5688888
Q ss_pred EcCCCCEEE
Q 012994 340 FSCDASYVI 348 (452)
Q Consensus 340 ~s~~~~~l~ 348 (452)
|-..|-.++
T Consensus 316 WEg~gLriA 324 (1189)
T KOG2041|consen 316 WEGTGLRIA 324 (1189)
T ss_pred EcCCceEEE
Confidence 876554443
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.35 E-value=2e-09 Score=98.07 Aligned_cols=267 Identities=9% Similarity=0.066 Sum_probs=165.3
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..+++++.+|.|..+|..+|+.+............... ++..++.++.+|.+..+|..+++.........
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------- 135 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-------- 135 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc--------
Confidence 67888889999999999999988776543322222222 46678888899999999998887654432211
Q ss_pred EEecCCeeeeeecCCCCeEEE-eCCeEEEEeCCCCCcceecccCCCceE-----EEEECCCCCcEEEEEecCCeEEEEEc
Q 012994 160 YVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQWGTDTVI-----SVRFNPAEPNVLATTASDRSITLYDL 233 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~~l~~~~~dg~i~i~d~ 233 (452)
.+.+.....++.+++. .++.+..+|..+++.+..+........ +.... + ..++.+..+|.+..+|+
T Consensus 136 -----~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 136 -----EVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDL 207 (377)
T ss_pred -----eeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEc
Confidence 0111001123334443 346799999999988766654322111 11111 2 35677888899999999
Q ss_pred cCCCCceEEEeeccc--------ceEEEcc-CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEE
Q 012994 234 RMSSPARKVIMRTKS--------NSISWNP-MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 304 (452)
Q Consensus 234 ~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 304 (452)
++++........... ..+.-+| .....+.+++.++.++.+|..+.+....... ....... .++..+
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~~~~~p~--~~~~~v 282 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA---SSYQGPA--VDDNRL 282 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeecc---CCccCce--EeCCEE
Confidence 988766554322110 0000111 0123466677789999999987654332211 1111122 246678
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 305 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+.++.||.+..+|..+++.+................ .+..|++++.+|.|+++|..+|+.+..+.
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 888899999999999998765542211122222222 45688899999999999999999886664
No 268
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.34 E-value=4.8e-11 Score=96.33 Aligned_cols=201 Identities=20% Similarity=0.204 Sum_probs=143.7
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
-.++.|++.+ ..++++..+|.+.+-+...... ++.++.|.-+++...|+. +.+.+++|+.||.+..||++...
T Consensus 124 ~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~--- 199 (339)
T KOG0280|consen 124 ALSLDISTSG-TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK--- 199 (339)
T ss_pred eeEEEeeccC-ceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---
Confidence 3467788888 7799999999999766555543 447899999999999986 55789999999999999996321
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 225 (452)
.. + ....+.|...|.++.-+|..+.++++|+.|
T Consensus 200 ------------~~---------------------------i--------~~n~kvH~~GV~SI~ss~~~~~~I~TGsYD 232 (339)
T KOG0280|consen 200 ------------TF---------------------------I--------WHNSKVHTSGVVSIYSSPPKPTYIATGSYD 232 (339)
T ss_pred ------------ce---------------------------e--------eecceeeecceEEEecCCCCCceEEEeccc
Confidence 00 0 111234678899999999888899999999
Q ss_pred CeEEEEEcc-CCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-c---cceeeeCcccceEEEEEcCC
Q 012994 226 RSITLYDLR-MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-E---AKCVHMGHESAVMDIDYSPT 300 (452)
Q Consensus 226 g~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~---~~~~~~~~~~~v~~~~~s~~ 300 (452)
-.|++||.+ .++++..-...+.+-.+.++|.....++++..-.-..+.+..... + .......|.+-...-.|...
T Consensus 233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred cceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc
Confidence 999999999 567787777788888999999776555555554444444443321 1 33344567766777777555
Q ss_pred CCEEEEEe-CCCeEE-EEECCC
Q 012994 301 GREFVTGS-YDRTIR-IFQYNG 320 (452)
Q Consensus 301 g~~l~s~~-~dg~i~-iwd~~~ 320 (452)
...|||++ .|..++ +|-.-+
T Consensus 313 ~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 313 DSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred cceeeeeeccccceeeeeeecc
Confidence 56788876 355544 664433
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=3.7e-12 Score=111.46 Aligned_cols=225 Identities=16% Similarity=0.278 Sum_probs=156.2
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCeeEEEEccCCCeEEEEeC
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 129 (452)
--+..+.||+..|..++--.+. +-+++++.|.+|++|.+... .+..++..|..+|.++.|..+.++++++
T Consensus 726 irL~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 3457889999999999877665 88999999999999998632 3566788999999999999998888766
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEE
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
||-|++||.-.++........ . ..+.+..+
T Consensus 803 D~giHlWDPFigr~Laq~~da---------------------------------------p-----------k~~a~~~i 832 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDA---------------------------------------P-----------KEGAGGNI 832 (1034)
T ss_pred cCcceeecccccchhHhhhcC---------------------------------------c-----------ccCCCcee
Confidence 789999998655432211000 0 01122222
Q ss_pred EECCC-CCcEEEE-EecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC
Q 012994 210 RFNPA-EPNVLAT-TASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG 287 (452)
Q Consensus 210 ~~~~~-~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 287 (452)
...++ +..++++ ++...+|+++|.+...-...+..- ...+
T Consensus 833 kcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc--------------------------------------na~~ 874 (1034)
T KOG4190|consen 833 KCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC--------------------------------------NAPG 874 (1034)
T ss_pred EecccCcchheeeeccchhhheeeecccccceeeEEec--------------------------------------cCCC
Confidence 22222 2234444 477889999998877654433210 1114
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEE-eecccccc
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRL-WKAKASEQ 366 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i-w~~~~~~~ 366 (452)
....+.+++..+.|++++.+-.+|+|.+.|.++|+.+..+..-. .....++ .|..+.|+....|.++.+ |..-+|..
T Consensus 875 Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme-cdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 875 PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME-CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc-chhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 45678899999999999999999999999999998776554332 2233333 355667887778888888 98887776
Q ss_pred cccCChhh
Q 012994 367 LGVLHPRE 374 (452)
Q Consensus 367 ~~~~~~~~ 374 (452)
.....+..
T Consensus 953 h~q~kppp 960 (1034)
T KOG4190|consen 953 HLQDKPPP 960 (1034)
T ss_pred eeccCCCC
Confidence 65555443
No 270
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.34 E-value=4.8e-09 Score=103.97 Aligned_cols=294 Identities=12% Similarity=0.163 Sum_probs=184.4
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEE----eCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLW----DIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iw----d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
...+.|.++.|.++. ..++.+..+|.|.+. +..+... .....-...|.+++||||+..|+..+.+|++.+.+-.
T Consensus 73 ~~~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 73 DPNDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc
Confidence 345789999999997 889999999999999 5544332 2222345689999999999999999999988876431
Q ss_pred C-------------C--CC--------CCCCCCCCC---------CCC----CeeEEEecCCeeeeeecCCCCeEEEeC-
Q 012994 140 V-------------A--TL--------TDSDDSTDN---------SSE----PLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (452)
Q Consensus 140 ~-------------~--~~--------~~~~~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (452)
- + +. ...+..... +.. ..... +...-..++|..||.++++..
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEE
Confidence 0 0 00 000000000 000 01112 455667899999999999864
Q ss_pred ----C---eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec---CCeEEEEEccCCCCceEEEee-----cc
Q 012994 183 ----A---QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS---DRSITLYDLRMSSPARKVIMR-----TK 247 (452)
Q Consensus 183 ----~---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~-----~~ 247 (452)
+ .++||+-+ |........-.+--.+++|.|.| +++|+... ...|.+|. +++..-..+... ..
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~ 306 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEK 306 (928)
T ss_pred EcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCce
Confidence 2 48999865 54444333334445578999998 77777654 34466665 344444444443 35
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCccc-cce-eeeCcccceEEEEEcCC-CCEEEEEeCCCeEEEEECC----C
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE-AKC-VHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYN----G 320 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~-~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~----~ 320 (452)
+..+.|++++..+.+.. . ..|.+|-..+..= .++ ........+..+.|+|. ...|...+.+|.+..+++. .
T Consensus 307 v~~l~Wn~ds~iLAv~~-~-~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~ 384 (928)
T PF04762_consen 307 VIELAWNSDSEILAVWL-E-DRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR 384 (928)
T ss_pred eeEEEECCCCCEEEEEe-c-CCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe
Confidence 67899999998766654 2 2388887766421 111 11122334555899994 4446666665666554432 1
Q ss_pred C----------------ceeee--------------eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 321 G----------------RSREI--------------YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 321 ~----------------~~~~~--------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
+ ..+.. +...-..+|.+++|++++..+++-..||.|.+|......
T Consensus 385 s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred cCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 1 11100 011123579999999999889999999999999965543
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.34 E-value=4.3e-11 Score=100.81 Aligned_cols=163 Identities=21% Similarity=0.312 Sum_probs=118.3
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCCC----ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-ccc
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSP----ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAK 282 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~ 282 (452)
.+..++.+ .+++++..+....+++.+.... ............+.+..+....++ +..-|.++.+|.-... ...
T Consensus 67 ~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v-~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSG-RLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLV-ADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCCCc-eEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEE-EeecCCceeeeeecccccCc
Confidence 34455555 7888888888877888776554 222333445556666655554333 3333344444433322 333
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
....||-+.+++++|+||+++|+++..|..|++-.+.....+..+..+|..-|..++.-++ +.|++||.|++|++||+.
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecc
Confidence 3445999999999999999999999999999999998877788888888889999999854 568999999999999999
Q ss_pred cccccccCChh
Q 012994 363 ASEQLGVLHPR 373 (452)
Q Consensus 363 ~~~~~~~~~~~ 373 (452)
+|+++.+++-.
T Consensus 224 sgk~L~t~dl~ 234 (390)
T KOG3914|consen 224 SGKLLDTCDLS 234 (390)
T ss_pred cCCcccccchh
Confidence 99999777533
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.33 E-value=8.5e-09 Score=87.81 Aligned_cols=218 Identities=12% Similarity=0.082 Sum_probs=150.9
Q ss_pred EEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec-CCCCeEEEeCCeEEEEeCC
Q 012994 114 GLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ-WEGDLFATAGAQVDIWNHN 191 (452)
Q Consensus 114 ~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~ 191 (452)
++.|.+ ++.++++--..+.|..|+..++.. ....... ...+.+. +++.++++..+.+.++|..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~ 68 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPD 68 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEecCC-CceEEEEccCCEEEEEEcCceEEEecC
Confidence 578888 666666666788999999865522 1122222 5566666 7888888888888888998
Q ss_pred CCCcceeccc-----CCCceEEEEECCCCCcEEEEEecC--------CeEEEEEccCCCCceEEEeecccceEEEccCCC
Q 012994 192 RSQPINSFQW-----GTDTVISVRFNPAEPNVLATTASD--------RSITLYDLRMSSPARKVIMRTKSNSISWNPMEP 258 (452)
Q Consensus 192 ~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
+++....... .....+.+++.|+| ++.++.... |.|..++.. ++.......-...+.++|+|++.
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence 8854433332 34578899999998 676665543 557777766 44433444455678999999999
Q ss_pred ceEEeecCCCeEEEEeCCCccc----cceeee--CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc
Q 012994 259 MNFTAANEDCNCYSYDSRKLDE----AKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 332 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~----~~~~~~--~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 332 (452)
.++++-+..+.|+.|+...... ...... ...+..-.+++..+|++.++....+.|.++|.+ |+.+..+....
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~- 224 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV- 224 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence 9999999999999999864332 111211 222347889999999988888889999999988 77777766663
Q ss_pred CcEEEEEEc-CCCCEEEEe
Q 012994 333 QRVFCVKFS-CDASYVISG 350 (452)
Q Consensus 333 ~~v~~~~~s-~~~~~l~s~ 350 (452)
..+++++|. ++.+.|+..
T Consensus 225 ~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 225 PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SSEEEEEEESTTSSEEEEE
T ss_pred CCEEEEEEECCCCCEEEEE
Confidence 579999994 665655543
No 273
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=1.3e-08 Score=88.05 Aligned_cols=168 Identities=13% Similarity=0.053 Sum_probs=128.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC-cEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC-TVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
.+++..| -|...|.+...+-.++ -+|.+.|.-..+.-+++-++.|..|| .+-|+|..++. ...
T Consensus 333 d~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------------~kr 396 (668)
T COG4946 333 DYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------------VKR 396 (668)
T ss_pred cEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------------EEE
Confidence 7777777 4677787765554443 25778899888888888899999999 89999998763 333
Q ss_pred EEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC----eEEEEE
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR----SITLYD 232 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d 232 (452)
....-+.+.++..+++|+.++.+.. .+.++|+.+++....-+...+-|+.+.|+|++ .++|-+--+| .|+++|
T Consensus 397 ~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 397 IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEe
Confidence 4445567889999999998888875 57777899998777666778899999999988 7887766555 689999
Q ss_pred ccCCCCceEEEeecccceEEEccCCCceEEee
Q 012994 233 LRMSSPARKVIMRTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (452)
+..++...........-+-+|.|+++++...+
T Consensus 476 m~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 476 MDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 98877665555555556677888887765544
No 274
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=3.4e-10 Score=100.18 Aligned_cols=195 Identities=13% Similarity=0.184 Sum_probs=140.8
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec--------------CCCCeEEEe--C
Q 012994 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ--------------WEGDLFATA--G 182 (452)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~--~ 182 (452)
|...++|....||.+++||...++....+..............|. ..+..+ .+-.+++-+ .
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 456789999999999999999887766554433333333333332 122222 222344443 3
Q ss_pred CeEEEEeCCCCCcceecc--cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCce
Q 012994 183 AQVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMN 260 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (452)
|.|.+|+...++....+. .|.+.|.++.++.+- ..|.+++.|+.+..|+..........
T Consensus 80 g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~------------------ 140 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIW------------------ 140 (541)
T ss_pred ccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeee------------------
Confidence 789999999999887776 488999999998876 68899999999999998765544332
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
......+.+++++|||..+++++ +.|++||+++++.+..+ .+|.++|.+++|
T Consensus 141 -------------------------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~f-tgh~s~v~t~~f 192 (541)
T KOG4547|consen 141 -------------------------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITF-TGHGSPVRTLSF 192 (541)
T ss_pred -------------------------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEe-cCCCcceEEEEE
Confidence 13345678899999999999886 57999999999988777 455699999999
Q ss_pred cCC-----CCEEEE-eeCCCcEEEeeccc
Q 012994 341 SCD-----ASYVIS-GSDDTNLRLWKAKA 363 (452)
Q Consensus 341 s~~-----~~~l~s-~~~dg~i~iw~~~~ 363 (452)
..+ |.++++ ...+..+.+|-+..
T Consensus 193 ~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 193 TTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEeccccccceeeeccccccceeEEEEEc
Confidence 887 666665 44455678887654
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.27 E-value=1.1e-08 Score=101.49 Aligned_cols=283 Identities=15% Similarity=0.232 Sum_probs=178.1
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC---------------C--------CceEEEeec--------------
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA---------------N--------RRTVCQYSG-------------- 107 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~---------------~--------~~~~~~~~~-------------- 107 (452)
-..+|.|++||||+ .+|+..+.+|++.+-+-. . |+....|+|
T Consensus 119 vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 35689999999998 899999889988876421 0 011011110
Q ss_pred ----------CCCCeeEEEEccCCCeEEEEeC---C---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee
Q 012994 108 ----------HQGAVRGLTVSTDGRILVSCGT---D---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH 171 (452)
Q Consensus 108 ----------h~~~v~~l~~~~~~~~l~s~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (452)
+...-..|+|-.||.++|+.+. . ..++||+-+ |.+....+ ...+--.+++|
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE------------~v~gLe~~l~W 264 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE------------PVDGLEGALSW 264 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc------------cCCCccCCccC
Confidence 2224457899999999998875 2 479999975 43222211 11122346899
Q ss_pred cCCCCeEEEeCC-----eEEEEeCCC---CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE
Q 012994 172 QWEGDLFATAGA-----QVDIWNHNR---SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 172 ~~~~~~~~~~~~-----~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
.|.|.++++... +|.+|.-+. ++..-.+......|..+.|++++ .+|+....|. |.+|-..+..-..+..
T Consensus 265 rPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWYLKqe 342 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWYLKQE 342 (928)
T ss_pred CCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEEEEEE
Confidence 999999999862 467776432 22222222345689999999998 7888776555 9999887665332222
Q ss_pred e----ecccceEEEccCCCceEEeecCCCeEEEEeCC----Cc-----------------------------cccc-eee
Q 012994 244 M----RTKSNSISWNPMEPMNFTAANEDCNCYSYDSR----KL-----------------------------DEAK-CVH 285 (452)
Q Consensus 244 ~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----~~-----------------------------~~~~-~~~ 285 (452)
. ......+.|+|..+..+...+.++.+..++.. .. .++. ...
T Consensus 343 i~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 343 IRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred EEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 2 22344589999888877777765655444321 10 0000 011
Q ss_pred eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee--------eeecc---------CCcCcEEEEEEcCCCCEEE
Q 012994 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR--------EIYHT---------KRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 286 ~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~---------~~~~~v~~~~~s~~~~~l~ 348 (452)
..-..+|.+++|++++..+++-..||.|.+|........ ..+.. .....+..++|..+..+++
T Consensus 423 l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 423 LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 133567999999999888999999999999985543211 11110 1124578889988777666
Q ss_pred EeeCC---CcEEEeeccc
Q 012994 349 SGSDD---TNLRLWKAKA 363 (452)
Q Consensus 349 s~~~d---g~i~iw~~~~ 363 (452)
....+ ..+.++++..
T Consensus 503 ~~~~~~~~~~i~~~~~~~ 520 (928)
T PF04762_consen 503 LSDSDSNQSKIVLVDIDD 520 (928)
T ss_pred EEecCcccceEEEEEecc
Confidence 55543 6778887743
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.7e-09 Score=93.88 Aligned_cols=247 Identities=19% Similarity=0.314 Sum_probs=151.8
Q ss_pred cEEEEEeCCCCcceEEEeeC-----------CCcEEEEeCCCCceEEEeecC--CCCe-eEEEEccCCCeEEEEeCCCcE
Q 012994 68 GISCMAKNPNYLKGFFSGSM-----------DGDIRLWDIANRRTVCQYSGH--QGAV-RGLTVSTDGRILVSCGTDCTV 133 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~-----------dg~i~iwd~~~~~~~~~~~~h--~~~v-~~l~~~~~~~~l~s~~~dg~v 133 (452)
.|.-+.|||.. +||+|-+. ...++|||+.+|...+.+..- ...+ .-..||.|++++|-...| +|
T Consensus 251 ~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SI 328 (698)
T ss_pred CceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eE
Confidence 58889999998 99998653 257999999999988887652 2222 235899999999987765 78
Q ss_pred EEEeCCCCCCCCCCCCCCCC---------CCCee--------------EEE------------ecCCeeeeeecCCCCeE
Q 012994 134 KLWNVPVATLTDSDDSTDNS---------SEPLA--------------VYV------------WKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~---------~~~~~--------------~~~------------~~~~~~~~~~~~~~~~~ 178 (452)
.||+..+..+.......... ...+. ... +.-.-..+-|..+|.+|
T Consensus 329 sIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 329 SIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 99987654332211100000 00000 000 00011234455566666
Q ss_pred EEeC---------C---eEEEEeCCCCC-cceecccCCCceEEEEECCCCCcEEEEEec--CCeEEEEEccCCCC----c
Q 012994 179 ATAG---------A---QVDIWNHNRSQ-PINSFQWGTDTVISVRFNPAEPNVLATTAS--DRSITLYDLRMSSP----A 239 (452)
Q Consensus 179 ~~~~---------~---~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~----~ 239 (452)
+..- | .+.|+.++... ++.... -...|...+|-|.|..+.+..+. ..++.+|-+.+... +
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 5431 1 25555555443 222222 35778899999999665554444 35688888874322 2
Q ss_pred eEEEeecccceEEEccCCCceEEee--cCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC------C
Q 012994 240 RKVIMRTKSNSISWNPMEPMNFTAA--NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD------R 311 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d------g 311 (452)
..+ .....+.+.|+|.|+.+++++ +..|.+.++|+........-...| ...+.+.|.|.|+|+++++.- .
T Consensus 488 k~~-dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 488 KEL-DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hhh-cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 222 235668999999999987765 458999999987522222222223 456789999999999999863 3
Q ss_pred eEEEEECC
Q 012994 312 TIRIFQYN 319 (452)
Q Consensus 312 ~i~iwd~~ 319 (452)
.-++|++.
T Consensus 566 GYri~tfq 573 (698)
T KOG2314|consen 566 GYRIFTFQ 573 (698)
T ss_pred ceEEEEee
Confidence 34555554
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=9.6e-09 Score=90.65 Aligned_cols=262 Identities=15% Similarity=0.231 Sum_probs=163.8
Q ss_pred CcEEEEeCCCCceEEEeecC---CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGH---QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
-.+.+|+............+ ..++...+++++|++++.+ .+..++|++..+.. .. .......
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~-------------~~-lt~~~~~ 75 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLK-------------VV-LCVELKK 75 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCc-------------EE-EEeccce
Confidence 35788886543332222223 4456778899999877765 45689999987652 22 2222237
Q ss_pred eeeeeecCCCCeEEEeC-------C-----eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEc
Q 012994 166 FWAVDHQWEGDLFATAG-------A-----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDL 233 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-------~-----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~ 233 (452)
...+.++|-+.++.+-. + .+.+|+..++.....+......-.+..|+.++ . +++--..+.+.+|++
T Consensus 76 ~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 76 TYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccch-h-hhhhhhcceEEEEec
Confidence 78899999999887642 1 38899999966655554433333577777765 2 333333456777776
Q ss_pred cCCCCceEEEeeccc----------------------------------------------------ceEEEccCCCceE
Q 012994 234 RMSSPARKVIMRTKS----------------------------------------------------NSISWNPMEPMNF 261 (452)
Q Consensus 234 ~~~~~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~~~~ 261 (452)
...+..........+ ..+.|++-+..++
T Consensus 154 ~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 154 GSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALL 233 (566)
T ss_pred CCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEE
Confidence 553322221111222 2344555555444
Q ss_pred EeecC-----------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceeeeec
Q 012994 262 TAANE-----------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG--SYDRTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 262 ~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~--~~dg~i~iwd~~~~~~~~~~~ 328 (452)
+.++. ...++++++.. ....+.....++|.++.|+|+|+-++++ -.--.+.|||++. ..+..+.
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g--~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~ 310 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQG--ESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP 310 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecC--ceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC
Confidence 44322 23455555552 2222222457899999999999876654 4567799999974 4443332
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeC---CCcEEEeecccccccccCChh
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSD---DTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~ 373 (452)
. ++=+++-|+|.|++|+.+|- .|.+-|||+.+.+++..+...
T Consensus 311 e---gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 311 E---GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred C---CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 2 56788999999999988765 588999999999988777543
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=5.5e-11 Score=107.70 Aligned_cols=262 Identities=17% Similarity=0.286 Sum_probs=179.6
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-ceEEEeecCC--CCeeEEEEccCC---CeEEEEeCCCcEEEEeCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-RTVCQYSGHQ--GAVRGLTVSTDG---RILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-~~~~~~~~h~--~~v~~l~~~~~~---~~l~s~~~dg~v~iwd~~ 139 (452)
.+++.++..+|.| +-+|.++.-|. .+-|+... .+..-+. |. -.|-.+.|+|.. .++++.+ ...-.+|++.
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA 99 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence 5678899999998 88888887764 45566543 3333232 33 357788898743 2455444 3455678874
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
... ....-..+.+|...|+.+.|+|+.+.++
T Consensus 100 ~ss-------------------------------------------------~~aIef~lhghsraitd~n~~~q~pdVl 130 (1081)
T KOG0309|consen 100 KSS-------------------------------------------------SNAIEFVLHGHSRAITDINFNPQHPDVL 130 (1081)
T ss_pred cCC-------------------------------------------------ccceEEEEecCccceeccccCCCCCcce
Confidence 321 1112234456888999999999999999
Q ss_pred EEEecCCeEEEEEccCCCCce-EE-EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE
Q 012994 220 ATTASDRSITLYDLRMSSPAR-KV-IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 297 (452)
++++.|-.+..||+++..... .. ........+.|+-..+. +.+.+....+.+||.+....+.....+|...|+.++|
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~f 209 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDF 209 (1081)
T ss_pred eeccccccceeeeccCCCcceeeeecccccCceeeecccCcc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHH
Confidence 999999999999999876433 22 23456678899888777 4455667789999999999999999999999999998
Q ss_pred cC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC--EEEEeeCCCcEEE---------eeccc-c
Q 012994 298 SP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRL---------WKAKA-S 364 (452)
Q Consensus 298 s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~i---------w~~~~-~ 364 (452)
.. ....+.+++.||+|++||................+|+.-++.|-|. ++.---.+..+.+ |+..+ .
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~ 289 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN 289 (1081)
T ss_pred hhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC
Confidence 76 3346888999999999999865544333333346777777777443 2221111223433 44332 3
Q ss_pred cccccCChhhhhhhHHH
Q 012994 365 EQLGVLHPREQRKHAYH 381 (452)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ 381 (452)
+.+..|.++.+.++++.
T Consensus 290 ~pVh~F~GH~D~V~eFl 306 (1081)
T KOG0309|consen 290 TPVHTFVGHDDVVLEFL 306 (1081)
T ss_pred cceeeecCcchHHHHHh
Confidence 45678888888887764
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=8e-10 Score=87.85 Aligned_cols=206 Identities=12% Similarity=0.144 Sum_probs=120.7
Q ss_pred cccccccccc-cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE------------EEeecCCCCeeEEEEccCCCeE
Q 012994 58 FIGALDGHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV------------CQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 58 ~~~~l~~h~~-~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~------------~~~~~h~~~v~~l~~~~~~~~l 124 (452)
.+....+|.+ .|+.+.++.+ ..|+++..++.+.......+.+. ..+..|.++-.+=+.+--++.+
T Consensus 27 ~vD~i~~~~d~~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V 104 (319)
T KOG4714|consen 27 LVDEIMQHADVKLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRV 104 (319)
T ss_pred chhhcccccceEEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCce
Confidence 3444444443 3677777766 67888888887776665443322 2233333333322333345679
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-------CeEEEEeCCCCCcce
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQPIN 197 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~~~ 197 (452)
++++.||.+.+++.+........ . ........+......+..+.+++ +..+.|+++..+.+.
T Consensus 105 ~~~~~dg~~~v~s~~~~~~~~~~-i----------~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLALMSR-I----------PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred EecCCCceEEEEechHHHhhhhh-c----------ccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 99999999999998652111100 0 00001111222333444555443 346677766544333
Q ss_pred ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 198 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
.-......|.+++-+|...+++++|+.||.+.+||.+.......+. ++..+..+.|+|..+..++++++||.++.||.
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 3333344599999999888899999999999999998874333221 34455566666666666666666666666665
Q ss_pred C
Q 012994 276 R 276 (452)
Q Consensus 276 ~ 276 (452)
.
T Consensus 254 s 254 (319)
T KOG4714|consen 254 S 254 (319)
T ss_pred C
Confidence 4
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.5e-08 Score=92.23 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=97.4
Q ss_pred CCceEEEEECCCCCcEEEEEecC--CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC--eEEEEeCCCc
Q 012994 203 TDTVISVRFNPAEPNVLATTASD--RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKL 278 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~ 278 (452)
.+......|+|++..++++.+.+ ..|.++|+.++................|+|++..++++....+ .|+.+|+...
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 34455677999986666666544 4577778766653332222223456689999998888776544 6888888765
Q ss_pred cccceeeeCcccceEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
........+. ....|||||++|+..+.. ..|.+.|+.++......... ......|+|||+.|+.
T Consensus 312 ~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~---~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 312 SVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG---VNQFPRFSSDGGSIMF 384 (419)
T ss_pred CeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC---CcCCeEECCCCCEEEE
Confidence 4422222222 124899999998776643 36888899888765444332 2335889999998776
Q ss_pred eeCC-C--cEEEeeccc
Q 012994 350 GSDD-T--NLRLWKAKA 363 (452)
Q Consensus 350 ~~~d-g--~i~iw~~~~ 363 (452)
.+.+ + .+.+.++..
T Consensus 385 ~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 385 IKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEccCCcEEEEEEecCC
Confidence 5432 2 355666643
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.3e-10 Score=96.91 Aligned_cols=268 Identities=16% Similarity=0.198 Sum_probs=180.3
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC---CceEEEeecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEeCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN---RRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVP 139 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~ 139 (452)
-|.+.|+.+..... +++.+++.||.++.|.-.. -+.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 38888888877665 8999999999999998543 1345556789999999999999999999777 9999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CC-eEEEe---CCeEEEEeCCCC--CcceecccCCCceEEEEEC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GD-LFATA---GAQVDIWNHNRS--QPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~---~~~i~i~d~~~~--~~~~~~~~~~~~i~~~~~~ 212 (452)
+-........... +..+. ...++. .. .++.+ ++.+.++|-... +....-..|..+|.++.++
T Consensus 85 n~DminmiKL~~l----------Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 85 NFDMINMIKLVDL----------PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred ccchhhhcccccC----------CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence 7755433222221 11111 111111 11 23332 256888886543 3334445589999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
+.+ ..+++....|.|.-|..... . +.+-..+.|.+..... +| .+.-.....
T Consensus 154 qa~-Ds~vSiD~~gmVEyWs~e~~--~-----qfPr~~l~~~~K~eTd-----------Ly----------~f~K~Kt~p 204 (558)
T KOG0882|consen 154 QAG-DSAVSIDISGMVEYWSAEGP--F-----QFPRTNLNFELKHETD-----------LY----------GFPKAKTEP 204 (558)
T ss_pred ccc-cceeeccccceeEeecCCCc--c-----cCccccccccccccch-----------hh----------cccccccCc
Confidence 988 67788888999999987631 0 0111112222211110 00 111233457
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc--------------------------------CCcCcEEEEEE
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT--------------------------------KRMQRVFCVKF 340 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~ 340 (452)
+++.|+|+|..+.+-+.|..|+++++.+|+..+.+.. +....-+.+.|
T Consensus 205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f 284 (558)
T KOG0882|consen 205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF 284 (558)
T ss_pred cceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence 8899999999999999999999999998876544311 01123456889
Q ss_pred cCCCCEEEEeeCCCcEEEeecccccccccCChhh
Q 012994 341 SCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 374 (452)
Q Consensus 341 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 374 (452)
...|++|+.|+-=| |++.++.+++....+-..+
T Consensus 285 des~~flly~t~~g-ikvin~~tn~v~ri~gk~e 317 (558)
T KOG0882|consen 285 DESGNFLLYGTILG-IKVINLDTNTVVRILGKDE 317 (558)
T ss_pred cCCCCEEEeeccee-EEEEEeecCeEEEEeccch
Confidence 99999999988764 8999999998887764433
No 282
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.3e-09 Score=96.64 Aligned_cols=146 Identities=18% Similarity=0.212 Sum_probs=122.3
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCe
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL 157 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 157 (452)
..++-|...|.|.+|++..++....+. .|.+.|.++.++.+-.+|.+++.|+.+..|+.........
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~----------- 139 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI----------- 139 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-----------
Confidence 568889999999999999999887775 6999999999999999999999999999999976643222
Q ss_pred eEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC-----CCcEEEEEecCCeEEEEE
Q 012994 158 AVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA-----EPNVLATTASDRSITLYD 232 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~l~~~~~dg~i~i~d 232 (452)
.......+.+++.+||+.++++++++|.+||+++.+.+..|.+|.++|.++.|... |..+|.+...+..+.+|-
T Consensus 140 -~~~~~~~~~sl~is~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 140 -WKEQKPLVSSLCISPDGKILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred -eccCCCccceEEEcCCCCEEEeccceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 12234456788999999999999999999999999999999999999999999876 545666666677788887
Q ss_pred ccCCC
Q 012994 233 LRMSS 237 (452)
Q Consensus 233 ~~~~~ 237 (452)
+....
T Consensus 219 v~~~~ 223 (541)
T KOG4547|consen 219 VEKED 223 (541)
T ss_pred EEccc
Confidence 76543
No 283
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.19 E-value=3.3e-08 Score=90.15 Aligned_cols=261 Identities=11% Similarity=0.079 Sum_probs=151.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..++.++.+|.+..+|..+|+.+...... +.+.+.... .+..++.++.+|.+..||..+++........... ...
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---~~~ 180 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---LTL 180 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---eee
Confidence 56788889999999999999988766532 223221111 3456777888999999999988765443321110 000
Q ss_pred EEecCCeeeeeecCCCCeEEE-eCCeEEEEeCCCCCcceecccCCC----c---eEEEEECC--CCCcEEEEEecCCeEE
Q 012994 160 YVWKNSFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSFQWGTD----T---VISVRFNP--AEPNVLATTASDRSIT 229 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~~~----~---i~~~~~~~--~~~~~l~~~~~dg~i~ 229 (452)
..... .... ++.+++. .++.+..+|..+++.+........ . ...+.-+| .+ ..+++++.+|.+.
T Consensus 181 ~~~~s----p~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~-~~vy~~~~~g~l~ 254 (377)
T TIGR03300 181 RGSAS----PVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG-GQVYAVSYQGRVA 254 (377)
T ss_pred cCCCC----CEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC-CEEEEEEcCCEEE
Confidence 00000 0111 2333332 236788888888876544321100 0 00000011 13 4677788899999
Q ss_pred EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
.||..+++.......... .... ..+. .+++++.++.++.+|..+.+.................. .+..|++++.
T Consensus 255 a~d~~tG~~~W~~~~~~~-~~p~--~~~~-~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 255 ALDLRSGRVLWKRDASSY-QGPA--VDDN-RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred EEECCCCcEEEeeccCCc-cCce--EeCC-EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeC
Confidence 999998876665542211 1111 2233 45666789999999997765432221111111122222 4668899999
Q ss_pred CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 310 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
+|.|+++|..+++.+..+..+...-.....+. ++ .|+.++.||.|+.|
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 99999999999998877654431112222332 33 57788999998876
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.18 E-value=1.1e-10 Score=105.82 Aligned_cols=211 Identities=17% Similarity=0.261 Sum_probs=148.9
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
--.+.||+.+|+.+.|+|+.+..+++++.|..+..||+.+.. ++..+..-...-..++|+-....+.+.+....|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 345789999999999999998999999999999999998764 4555554455677889987333344445667899999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+..+ +.++..+++|...|+.+.|+..-..
T Consensus 187 ~r~g---------------------------------------------------s~pl~s~K~~vs~vn~~~fnr~~~s 215 (1081)
T KOG0309|consen 187 LRKG---------------------------------------------------STPLCSLKGHVSSVNSIDFNRFKYS 215 (1081)
T ss_pred ccCC---------------------------------------------------CcceEEecccceeeehHHHhhhhhh
Confidence 8755 2245555667778888888775556
Q ss_pred EEEEEecCCeEEEEEccCCCCc--eEEEeecccceEEEccCCCceEEeecCCC-eE---------EEEeCCCccccceee
Q 012994 218 VLATTASDRSITLYDLRMSSPA--RKVIMRTKSNSISWNPMEPMNFTAANEDC-NC---------YSYDSRKLDEAKCVH 285 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i---------~~~d~~~~~~~~~~~ 285 (452)
.+.+++.||+|+.||....... +......++-...+.|.+...++.-...+ .+ ..|+......+...+
T Consensus 216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F 295 (1081)
T KOG0309|consen 216 EIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTF 295 (1081)
T ss_pred hhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeee
Confidence 7889999999999998755433 33333444445556665554443322222 22 334444556677888
Q ss_pred eCcccceEEEEEcCCCC----------EEEEEeCCCeEEEEECCC
Q 012994 286 MGHESAVMDIDYSPTGR----------EFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 286 ~~~~~~v~~~~~s~~g~----------~l~s~~~dg~i~iwd~~~ 320 (452)
.||...|....|-..+. .|+|-+.|..+++|-+.+
T Consensus 296 ~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 296 VGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 89999988777754322 599999999999998864
No 285
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=8.6e-08 Score=78.08 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=138.3
Q ss_pred EEeCCCCcceEEEeeCCCcEEEEeCCCC--ceEEEe---ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 72 MAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQY---SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 72 ~~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~---~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
++.+++| ++||.- .|..|.|-...+. ..+... +...-.=..++||||+..||.+...|+|+++|+....+...
T Consensus 3 ~~~~~~G-k~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDG-KLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCC-cEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence 4567777 666554 4667777655432 122222 22223457799999999999999999999999854321100
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC-----CcEEEE
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE-----PNVLAT 221 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~l~~ 221 (452)
.... .+. + .-...|..+.|.+.. ...|++
T Consensus 81 ~p~~-------------------~~~--~-------------------------d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 81 PPAM-------------------SFP--G-------------------------DLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred Cccc-------------------ccC--C-------------------------ccccceeeeEeeccccccccceeEEE
Confidence 0000 000 0 012233333332211 134566
Q ss_pred EecCCeEEEEEccCC-----CCceEEEe----ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 222 TASDRSITLYDLRMS-----SPARKVIM----RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
-..+|.++-|-+..+ +....+.. ...+.++.++|..+.+++.|.....-... .+....+
T Consensus 115 i~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s------------~a~~~GL 182 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMS------------KASSCGL 182 (282)
T ss_pred EeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccc------------cccccCc
Confidence 667788877765322 22233332 45678999999998888777665421110 0112223
Q ss_pred EEEEEcCCCCE--EEEEeCCCe------EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 293 MDIDYSPTGRE--FVTGSYDRT------IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 293 ~~~~~s~~g~~--l~s~~~dg~------i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
++-.+-.+..+ .++...|+. -.+|.+-+.+... ........|..|..||||..|++...+|.|.+|++.+-
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 33222222221 122222221 2344443322211 12334478999999999999999999999999999999
Q ss_pred cccccCChhhhh
Q 012994 365 EQLGVLHPREQR 376 (452)
Q Consensus 365 ~~~~~~~~~~~~ 376 (452)
++.+.+...+++
T Consensus 262 ~~~~~W~~~eqP 273 (282)
T PF15492_consen 262 RLQRSWKQDEQP 273 (282)
T ss_pred hhhcccchhhCC
Confidence 988888776654
No 286
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=5.6e-10 Score=92.26 Aligned_cols=240 Identities=12% Similarity=0.253 Sum_probs=147.1
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce---EEEeecCC-----CCeeEEEEcc-CCCeEEEEeCCCcE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---VCQYSGHQ-----GAVRGLTVST-DGRILVSCGTDCTV 133 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~~h~-----~~v~~l~~~~-~~~~l~s~~~dg~v 133 (452)
.+|+--|+++.++.|+ ..++++. |=.|.+|+++-... +..++.+. .-|++..|+| ..+.++-.+..|+|
T Consensus 161 NaHtyhiNSIS~NsD~-Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDK-ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ccceeEeeeeeecCcc-ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 6799999999999997 6666654 77899999874332 22233332 4689999999 45677778888999
Q ss_pred EEEeCCCCCCCCCCC----CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeC-CCCCcceecccCC----
Q 012994 134 KLWNVPVATLTDSDD----STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNH-NRSQPINSFQWGT---- 203 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~-~~~~~~~~~~~~~---- 203 (452)
++-|++...+..... ....+...--....-..+..+.|+++|+++++-+ -+|++||+ ...+++..++.|.
T Consensus 239 rLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred EEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHH
Confidence 999998654432221 1111111111122235677899999999999999 68999999 4566777666552
Q ss_pred --------Cce---EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEE-EccCCCceEEeecCCCeEE
Q 012994 204 --------DTV---ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSIS-WNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 204 --------~~i---~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 271 (452)
+.| .-++|+.++ ..+++|+....+++|++..+.... +.......... -.-.....+.+++......
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gsk~d-~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~ 396 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGSKED-FTLEASRKNMKPRKVLKLRLVSSSGKRKRDE 396 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCccee-ecccccccCCcccccccceeeecCCCccccc
Confidence 222 347888777 689999999999999965543221 11111100000 0001111222222221110
Q ss_pred EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 012994 272 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iw 316 (452)
++ .........+...+|+|..+.+|++..+. +++|
T Consensus 397 ~~---------vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 397 IS---------VDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred cc---------cchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 00 00012234566789999999999887665 5555
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.9e-09 Score=96.00 Aligned_cols=268 Identities=13% Similarity=0.152 Sum_probs=173.3
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC------------CCeEEEEeCCCcE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD------------GRILVSCGTDCTV 133 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~------------~~~l~s~~~dg~v 133 (452)
...-.++.|+|.| ++|-|+ ...|.+.|..+.+.+..+..|...|+.+.|.|. .-.||++...|.|
T Consensus 15 ~sN~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCccc--eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 3346788999986 455555 568999999999999999999999999999872 1257788888999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC---CC-CeEEEe--CCeEEEEeCCCCCcceecccCCCceE
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW---EG-DLFATA--GAQVDIWNHNRSQPINSFQWGTDTVI 207 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~ 207 (452)
.+||...+.....+... ..++..++|-+ +. .++++- ...+.+|+..+|+.+...........
T Consensus 92 il~d~~~~s~~~~l~~~------------~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs 159 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHS------------NDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILS 159 (1062)
T ss_pred EEEEehhhhhhhhhcCC------------CcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCccee
Confidence 99999877554443333 22333444432 33 333333 35799999999999998888778888
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCC----CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSS----PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
|+.+.|-+.+.+..-+..|.+.+-+.-... +.+.+..........- ...-.+++. ..+..+...
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~---lere~at~n---------s~ts~~~sa 227 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAH---LERETATGN---------STTSTPASA 227 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhh---hhhhhhccc---------cccCCCcch
Confidence 899999888888888888888877653322 2223322221111000 000011110 000000000
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC--EEEEeeCCCcEEEeec
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKA 361 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~ 361 (452)
.+ ......++|+|.-+.++-......+.++|++-..++....... +.+.-+.|-|+++ .|++.-.||.+.||-.
T Consensus 228 ~f---ity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier-~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 228 YF---ITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER-GGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hH---HHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc-CCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 00 0012346788866655555667789999999887776664444 4466677777655 6999999999999987
Q ss_pred ccc
Q 012994 362 KAS 364 (452)
Q Consensus 362 ~~~ 364 (452)
+..
T Consensus 304 k~~ 306 (1062)
T KOG1912|consen 304 KEE 306 (1062)
T ss_pred ecc
Confidence 653
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=4.2e-09 Score=95.60 Aligned_cols=242 Identities=11% Similarity=0.144 Sum_probs=170.9
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCC---CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS---TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (452)
......|++|+.+..+++.|+.||.+++..+.+...-..... ...-........+...+..+.|+.+.+.+.+++
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 345688999999999999999999999998876543322221 222233445566788899999999999888887
Q ss_pred CeEEEEeCCCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCce
Q 012994 183 AQVDIWNHNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMN 260 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (452)
|-|.+|-+-.+.-...+.. ..+.|.+++|+.+| ..++....||.|.+=.+..++.-.+-........+.|+++...
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~- 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQ- 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHH-
Confidence 6799999988876655533 35678999999998 6777888899888877765554333333344557889998776
Q ss_pred EEeecCCCeEEEEeCCCccccc----e------eeeCcccceEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCc
Q 012994 261 FTAANEDCNCYSYDSRKLDEAK----C------VHMGHESAVMDIDYS--------PTGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~----~------~~~~~~~~v~~~~~s--------~~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
++.+-.+|.+.+||....-... + .+......|-.+.|. ||...|+.+-.+|.+.+-.-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 4445566889999876432111 0 111111235555553 477889999999999988766655
Q ss_pred eeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 323 SREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 323 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
....+..+ -.+....|+++|..|+.+|.|
T Consensus 251 ~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 251 EPVVVDTG--MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCeEEecc--cEeecceecCCCcEEEEccCc
Confidence 55555555 568999999999999988754
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=9e-10 Score=94.33 Aligned_cols=214 Identities=12% Similarity=0.158 Sum_probs=161.5
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDI 187 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 187 (452)
|...|+.+.-.. .+++.+++.||.++.|--..-.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~is--------------------------------------------- 41 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRIS--------------------------------------------- 41 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCcc---------------------------------------------
Confidence 778888776554 4799999999999999753210
Q ss_pred EeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec-CCeEEEEEccCCCCceEEEeecccceEEEccCCC----ceEE
Q 012994 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEP----MNFT 262 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 262 (452)
.-+.+..+..|...|.+++.+.++ .++.+.+. |..++++|+.+...+.-+.....+..+.|....+ .+.+
T Consensus 42 ----GvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAV 116 (558)
T KOG0882|consen 42 ----GVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAV 116 (558)
T ss_pred ----ceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEe
Confidence 012245566678888889988877 78888777 9999999999887776666666666666654444 4444
Q ss_pred eecCCCeEEEEeCCCcc-ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC------Cceeeee--------
Q 012994 263 AANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG------GRSREIY-------- 327 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~------~~~~~~~-------- 327 (452)
....++.+.++|..... +......-|..+|..+.+++-+..+++....|.|.-|.... .+....+
T Consensus 117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~ 196 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG 196 (558)
T ss_pred ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhc
Confidence 55678999999988765 44455567999999999999999999999999999999873 1111111
Q ss_pred ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 328 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
........+++.|+|+|..+.+-+.|..|+++++.+|+.++.+..
T Consensus 197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 011235678999999999999999999999999999999887753
No 290
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=1.4e-10 Score=107.42 Aligned_cols=259 Identities=14% Similarity=0.202 Sum_probs=171.7
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC--cEEEE
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLW 136 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iw 136 (452)
..+|+.|+..-+|++|+-+. +.|+.|+..|.|+++++.+|.......+|.++|+.+.=+.+|..+++.+.-. ...+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred chhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 46788899999999999997 9999999999999999999999999999999999999999998877665433 47899
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC--CCeEEEeCCeEEEEeCCCCCcceecc-c---CCCceEEEE
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDLFATAGAQVDIWNHNRSQPINSFQ-W---GTDTVISVR 210 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~i~d~~~~~~~~~~~-~---~~~~i~~~~ 210 (452)
++.+. ..+...+ ..-.++.|+.. ...+.+.+....+||+.++.++.++- . ....-++..
T Consensus 1173 ~~~s~------------~~~~Hsf---~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1173 DASST------------GGPRHSF---DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred ccccc------------cCccccc---cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 98642 1111111 11223444443 33445555689999999999887632 2 222347789
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
|+|.+ .+++ .|| .+||.+..+.++.+..-.....-.|+|.+..+++- -.+||++++.-...+-. -
T Consensus 1238 FsP~D-~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~---L 1302 (1516)
T KOG1832|consen 1238 FSPCD-TLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPS---L 1302 (1516)
T ss_pred cCCCc-ceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEee------chhhhhHHHHHHhcCcc---c
Confidence 99988 4543 455 58999998877776544444455688888765542 25899988654433211 1
Q ss_pred ceEEEEEcCCCCEEEEEe-----C-C-----------CeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 291 AVMDIDYSPTGREFVTGS-----Y-D-----------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~-----~-d-----------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.-..+.|+..|..++..- . | ...+-||...-..+.++... ..+..++-+|...+|...
T Consensus 1303 dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~--R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVD--RCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecc--cchhhhhcCCccceEEEE
Confidence 234577888887655432 0 0 11233333333333343332 356667777766776654
No 291
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.11 E-value=4.7e-08 Score=78.39 Aligned_cols=241 Identities=14% Similarity=0.055 Sum_probs=153.1
Q ss_pred EEEEeCCCC----cceEEEeeCCCcEEEEeCCCCceE-EEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 70 SCMAKNPNY----LKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 70 ~~~~~~~~~----~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
+.|.|.|.. -.+||.|+..|...+|...+.+.. .....|...|+-+.=.. ..-.+..++.|.++++.+++-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 445666631 257899999999999999866543 33333444333221111 223467788899999998865522
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEEEeCCCCC-cc-e-ecccCCCceEEEEECCCCCcE
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDIWNHNRSQ-PI-N-SFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i~d~~~~~-~~-~-~~~~~~~~i~~~~~~~~~~~~ 218 (452)
........-....+.+++++.++++.+. +|..|.+.... .+ . ......+.-.+..|+..+ ..
T Consensus 151 ------------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~ 217 (344)
T KOG4532|consen 151 ------------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQ 217 (344)
T ss_pred ------------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ce
Confidence 1111111123678899999999999884 68888876532 22 2 222334556678888876 68
Q ss_pred EEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 219 LATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
+|++..||++.|||++......... ......|.+.+..+.|+
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~--------------------------------------sstrp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEI--------------------------------------SSTRPHHNGAFRVCRFS 259 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhh--------------------------------------cccCCCCCCceEEEEec
Confidence 9999999999999998665433221 11122588899999999
Q ss_pred CCCC--EEEEEeCCCeEEEEECCCCceeeeeccC-------CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 299 PTGR--EFVTGSYDRTIRIFQYNGGRSREIYHTK-------RMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 299 ~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
+.|. +|+..-.-+.+.+.|++++...+..... ....|..-.|+.++.-+.+.+++ .+.=|++.
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeecc
Confidence 8664 4555555678999999988765543221 22347777787777666665554 34445544
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=7.9e-08 Score=87.60 Aligned_cols=191 Identities=9% Similarity=-0.004 Sum_probs=117.4
Q ss_pred cEEEEEeCCCCcceEEEeeC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE-EeCC--CcEEEEeCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTD--CTVKLWNVPVA 141 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~d--g~v~iwd~~~~ 141 (452)
.+....|+|+|...++..+. +..|.++|+.+++...... ..+......|+|||+.|+. .+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 56688999998333554333 3569999998887644333 4556677889999987654 3334 45777787665
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---C--eEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
.... ............|+|||..++..+ + +|.++|+.+++..+...... . ...|+|++.
T Consensus 268 ~~~~-------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~--~~~~SPDG~ 331 (419)
T PRK04043 268 TLTQ-------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N--NSSVSTYKN 331 (419)
T ss_pred cEEE-------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c--CceECCCCC
Confidence 3211 111111123457999998766654 2 58889998877644332211 1 248999996
Q ss_pred cEEEEEecC--------CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCe--EEEEeCC
Q 012994 217 NVLATTASD--------RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCN--CYSYDSR 276 (452)
Q Consensus 217 ~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~d~~ 276 (452)
.++++.... ..|.+.|+.++.. ..+..........|+|++..++.+....+. +..+++.
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 555555443 3678888877653 333333334468899999987776654433 4444443
No 293
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-08 Score=85.57 Aligned_cols=254 Identities=13% Similarity=0.088 Sum_probs=150.5
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEe
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWN 137 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd 137 (452)
..-+.+|...|..++|+|....++..++.+..|.|.|+++...+..+..| ..+++++|.-|. ++|+.|-.+|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 34567889999999999997457889999999999999999888888877 789999998754 5788888999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC--cceeccc-CCCceEEEEECCC
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ--PINSFQW-GTDTVISVRFNPA 214 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--~~~~~~~-~~~~i~~~~~~~~ 214 (452)
++................++....+-.+ -...+.+.+++...-.+..|++.-.. ....+.. ..+...++...+.
T Consensus 265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~---n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~ 341 (463)
T KOG1645|consen 265 MRQPEGPLMELVANVTINPVHKIAPVQP---NKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGV 341 (463)
T ss_pred ccCCCchHhhhhhhhccCcceeecccCc---cccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence 9766432211111111111111111000 02233455555555566777654321 1111111 2456667777775
Q ss_pred CCcEEEEEecCCe------EEE-EEccCCCCceEEEe---e------cccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 215 EPNVLATTASDRS------ITL-YDLRMSSPARKVIM---R------TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 215 ~~~~l~~~~~dg~------i~i-~d~~~~~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
...+|++.-.+-+ +-. -|...+.++..... + .....+.-.++...++..+.....+.+||....
T Consensus 342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 5455555443210 111 01111111111100 0 011223334556667777888899999999987
Q ss_pred cccceeeeCcccceEEEEEcC-C-CCEEEEEeCCCeEEEEECC
Q 012994 279 DEAKCVHMGHESAVMDIDYSP-T-GREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~-~-g~~l~s~~~dg~i~iwd~~ 319 (452)
....... -..+|.+++... + +.+|++-. |..++||..+
T Consensus 422 evvQ~l~--~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 422 EVVQTLA--LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred heeeecc--cCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 6555442 336787777655 3 34565554 6678888764
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=6.3e-08 Score=83.93 Aligned_cols=224 Identities=15% Similarity=0.162 Sum_probs=147.6
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCC-CCCeeEEEecCCe-eeeeecCCCCeEEEeC-CeEEEEeCCCCCc
Q 012994 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS-SEPLAVYVWKNSF-WAVDHQWEGDLFATAG-AQVDIWNHNRSQP 195 (452)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~ 195 (452)
.||+.++. +..|.|.+||..+..+.......... ............. ...+. .+|.+++..+ |+..+.+...+-.
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSRGkaFi~~~~~~~~ 353 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEecCcEEEECCCCCee
Confidence 46776665 34578999999877654322211100 0000000000000 11111 2566666665 7888877666554
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEecCC-eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
++.- +...|.-..+..+. .-++.|..|| .+-+||.+++........-+.+.++..++++.. ++++.....++++|
T Consensus 354 iqv~--~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~el~vid 429 (668)
T COG4946 354 IQVG--KKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKK-VVVANDRFELWVID 429 (668)
T ss_pred EEcC--CCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcE-EEEEcCceEEEEEE
Confidence 4432 35557777777766 4678899998 899999998877666666677788899998876 67778888999999
Q ss_pred CCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 275 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR----TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
+.+..... +.....+-|+.+.|||+++++|-+--+| .|+++|+.+++........ +.=.+-+|.||+++|.--
T Consensus 430 idngnv~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 430 IDNGNVRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred ecCCCeeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCCcEEEEE
Confidence 98765433 3335567899999999999999887665 4899999998876554221 223456889999987754
Q ss_pred e
Q 012994 351 S 351 (452)
Q Consensus 351 ~ 351 (452)
+
T Consensus 507 s 507 (668)
T COG4946 507 S 507 (668)
T ss_pred e
Confidence 3
No 295
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.04 E-value=9.6e-08 Score=76.66 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=128.6
Q ss_pred CCCeEEEeC--CeEEEEeCCCCCcc-eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccc
Q 012994 174 EGDLFATAG--AQVDIWNHNRSQPI-NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSN 249 (452)
Q Consensus 174 ~~~~~~~~~--~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~ 249 (452)
...+++.+| |...+|...+.+.. +....+...|.-+.-.-+...-+..++.|.++++.++...........+ -...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 344666665 67999998876533 2222233322211111111234667888999999988765544443333 3367
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccce--eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee-
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC--VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI- 326 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~- 326 (452)
++++++++... ++.+....+..|.+........ ........-.+..|+.....+|++..||++.|||++.......
T Consensus 163 s~~~snd~~~~-~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 163 SLHYSNDPSWG-SSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred eeEEcCCCceE-EEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 88899988874 4445556677777655433222 2223334456788999989999999999999999987544322
Q ss_pred ---eccCCcCcEEEEEEcCCCC--EEEEeeCCCcEEEeecccccccccCChhhh
Q 012994 327 ---YHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKAKASEQLGVLHPREQ 375 (452)
Q Consensus 327 ---~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 375 (452)
...+|.+.+..+.|++.|. +|+..-.-+.+.+-|+.++...+.+...++
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 2455778999999998664 344444457899999999887766654443
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.03 E-value=8.5e-09 Score=96.15 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=111.1
Q ss_pred CCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec---------CCeEEEEEccCCCCceEEE
Q 012994 175 GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS---------DRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 175 ~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~ 243 (452)
++++.+++ |+|.+-|.++.+.+.++..|.+.|.++... | ++|++||. |..|++||+++.+.+..+.
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 34444443 456666667777888999999999888776 4 77888875 5568999999999888888
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc---ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA---KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
......-+.|.|.-...+++.+..|...+.|..+...+ ..........+..+++|++|+.||.|..+|.|.+|.
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88888888999999999999999999999995544433 233334445699999999999999999999999998
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.03 E-value=2e-07 Score=94.50 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=131.1
Q ss_pred EEEEEeCCCCcceEEEe-eCCCcEEEEeCCCCceEEEeecC-----------------CCCeeEEEEcc-CCCeEEEEeC
Q 012994 69 ISCMAKNPNYLKGFFSG-SMDGDIRLWDIANRRTVCQYSGH-----------------QGAVRGLTVST-DGRILVSCGT 129 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~h-----------------~~~v~~l~~~~-~~~~l~s~~~ 129 (452)
-..+++++++ +.|+++ ..++.|+++|+.++. +.++.+- -..-..++|+| ++..+++.+.
T Consensus 626 P~GIavd~~g-n~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAKK-NLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCCC-CEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 4778898887 655554 445789999987654 3333210 01235789999 5666677777
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEE
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
++.|++||..++.... +..+|.. ...+ +... ....-.....+
T Consensus 704 ~~~I~v~d~~~g~v~~-------------------------~~G~G~~--------~~~~---g~~~--~~~~~~~P~GI 745 (1057)
T PLN02919 704 QHQIWEYNISDGVTRV-------------------------FSGDGYE--------RNLN---GSSG--TSTSFAQPSGI 745 (1057)
T ss_pred CCeEEEEECCCCeEEE-------------------------EecCCcc--------ccCC---CCcc--ccccccCccEE
Confidence 8899999986542110 0001100 0000 0000 00011335668
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEE-----------E-----------eecccceEEEccCCCceEEeecCC
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKV-----------I-----------MRTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+++|++..++++.+.++.|++||+.++...... . .-.....+++++++. ++++...+
T Consensus 746 avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N 824 (1057)
T PLN02919 746 SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYN 824 (1057)
T ss_pred EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCC
Confidence 888877556667777788888887754421100 0 011235778888775 67888889
Q ss_pred CeEEEEeCCCccccceee------------eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 268 CNCYSYDSRKLDEAKCVH------------MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~------------~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
+.|++||..+.......- .+.-.....++++++|+++++-+.++.|++||+.++..
T Consensus 825 ~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999987543221111 11223577899999999988888999999999998764
No 298
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.2e-09 Score=96.10 Aligned_cols=192 Identities=16% Similarity=0.240 Sum_probs=134.5
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA 181 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (452)
++.+.+|...|..++-..+.+-+++++.|.+|++|.+....- .
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD------------~------------------------- 770 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD------------E------------------------- 770 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC------------c-------------------------
Confidence 456779999999988877888899999999999999864310 0
Q ss_pred CCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceE
Q 012994 182 GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 182 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
..+..+..+++.|..+|.++.|..+. +.++ +.||.|.+||.--+..+.... +.|..
T Consensus 771 --------~~tsaCQfTY~aHkk~i~~igfL~~l-r~i~--ScD~giHlWDPFigr~Laq~~---------dapk~---- 826 (1034)
T KOG4190|consen 771 --------IGTSACQFTYQAHKKPIHDIGFLADL-RSIA--SCDGGIHLWDPFIGRLLAQME---------DAPKE---- 826 (1034)
T ss_pred --------cccceeeeEhhhccCcccceeeeecc-ceee--eccCcceeecccccchhHhhh---------cCccc----
Confidence 12333566778899999999998765 4444 458999999976555443221 11110
Q ss_pred EeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeeec----cCCcCcEE
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYH----TKRMQRVF 336 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~ 336 (452)
+..+.|.++. +-+...++.| +...+|+++|.+.+.....+. .+..+.+.
T Consensus 827 -------------------------~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 827 -------------------------GAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -------------------------CCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 1112233332 1134444444 778999999999876554442 22235688
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHH
Q 012994 337 CVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAY 380 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 380 (452)
+++..+.|++++.+-.+|.|.+.|..+|+.+..+++-+-.....
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql 924 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL 924 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh
Confidence 99999999999999999999999999999998888776555544
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=2.2e-07 Score=75.74 Aligned_cols=40 Identities=10% Similarity=0.331 Sum_probs=35.0
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
....|..|.+||||..||+...+|.|.+|++.+-+.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 4567999999999999999999999999999887665554
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=3.7e-07 Score=83.61 Aligned_cols=267 Identities=8% Similarity=0.032 Sum_probs=160.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCC-Ce-e-----EEEEcc--CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG-AV-R-----GLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~-~v-~-----~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
..+++++.+|.+.-+|..+|+.+........ .. . .+.-.| ++..++.++.+|.+..+|..+++........
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 149 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVA 149 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCC
Confidence 5678888899999999999998876543210 00 0 000111 3456778888999999999999876655432
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcceecccCCCce-----EEEEECCCCCcEEEEEec
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTV-----ISVRFNPAEPNVLATTAS 224 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~l~~~~~ 224 (452)
... ...++ . .++.+++.. ++.+..+|..+++.+.......... .+-... + ..++.++.
T Consensus 150 ~~~--------~ssP~----v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~ 213 (394)
T PRK11138 150 GEA--------LSRPV----V-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGD 213 (394)
T ss_pred Cce--------ecCCE----E-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcC
Confidence 210 00110 1 133444333 3678999999998877665421110 011111 2 34667788
Q ss_pred CCeEEEEEccCCCCceEEEeeccc--------ceEEEcc--CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 225 DRSITLYDLRMSSPARKVIMRTKS--------NSISWNP--MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
+|.+..+|..+++........... ..+..+| .+. .+++++.++.++.+|..+.+..-....+ ....
T Consensus 214 ~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~~~W~~~~~---~~~~ 289 (394)
T PRK11138 214 NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQIVWKREYG---SVND 289 (394)
T ss_pred CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCCEEEeecCC---CccC
Confidence 999999999988876655432211 0011122 123 3455667889999998876544322111 1111
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+.. .+..|+.++.+|.+..+|..+|+.+............+... .+.+|+.++.||.|.+.|..+|+.+...
T Consensus 290 ~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 290 FAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 222 45677788889999999999998765443211111222222 2456788999999999999999887654
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.98 E-value=5e-07 Score=76.75 Aligned_cols=225 Identities=12% Similarity=0.081 Sum_probs=133.3
Q ss_pred CCCcEEEEeCCCCceEEEeecCCCCeeEEE--EccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecC
Q 012994 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLT--VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (452)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
.+|+|..||..+|+.+....- ...+.... ..+++..+++++.++.|..||..+++....... ..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-------------~~ 66 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-------------PG 66 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-------------SS
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-------------cc
Confidence 378999999999999888753 11122222 233566788888999999999988854332222 22
Q ss_pred CeeeeeecCCCCeEEE-eCCeEEEEeCCCCCcceec-ccCC---C--ceEEEEECCCCCcEEEEEecCCeEEEEEccCCC
Q 012994 165 SFWAVDHQWEGDLFAT-AGAQVDIWNHNRSQPINSF-QWGT---D--TVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~-~~~~---~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 237 (452)
.+.......++.+++. .++.+..+|..+++.+... .... . ......+. + ..++++..++.|..+|+++++
T Consensus 67 ~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 67 PISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--G-DRLYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp CGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--T-TEEEEEETCSEEEEEETTTTE
T ss_pred cccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--c-CEEEEEeccCcEEEEecCCCc
Confidence 2212122334444444 3568999999999988774 3221 1 11222222 3 567788889999999999988
Q ss_pred CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCe-EEEE
Q 012994 238 PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IRIF 316 (452)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~-i~iw 316 (452)
.+.............+ .....+..-....++ .++.++.+|. +.+
T Consensus 144 ~~w~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~- 188 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPI---------------------------------SSFSDINGSPVISDG-RVYVSSGDGRVVAV- 188 (238)
T ss_dssp EEEEEESSTT-SS--E---------------------------------EEETTEEEEEECCTT-EEEEECCTSSEEEE-
T ss_pred EEEEeecCCCCCCcce---------------------------------eeecccccceEEECC-EEEEEcCCCeEEEE-
Confidence 7766544221100000 000111222222244 6666666775 555
Q ss_pred ECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 317 QYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 317 d~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
|+.+++...... . ..+..+ ...++..|+.++.++.|..||+.+|+.+
T Consensus 189 d~~tg~~~w~~~-~--~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 189 DLATGEKLWSKP-I--SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ETTTTEEEEEEC-S--S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ECCCCCEEEEec-C--CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 999998664222 2 223331 3457778888888999999999998864
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.98 E-value=1.9e-08 Score=85.21 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=111.4
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--Ce---EE
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQ---VD 186 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---i~ 186 (452)
...+..++.+++||.+..+....++++..... ..+............++.+..+......++ |+ +.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~---------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK---------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC---------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeee
Confidence 44456677888888888887777777754421 123333444444444555544444433333 44 55
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecC
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (452)
+|.... .....+-+|-..++.++|+|++ .+++++..|..|++-.......+..
T Consensus 136 i~s~~~-~~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Ies------------------------- 188 (390)
T KOG3914|consen 136 ILSADS-GRCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIES------------------------- 188 (390)
T ss_pred eecccc-cCcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhh-------------------------
Confidence 565555 4455667789999999999998 7999999999999876543332222
Q ss_pred CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 267 ~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
...||..-|..++.-++ ..|++|+.|++|++||+.+|+.+..+
T Consensus 189 -----------------fclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 189 -----------------FCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -----------------hccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 23389999999998865 56899999999999999999877554
No 303
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=4.3e-09 Score=83.81 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=95.8
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEe--ecccceEEEccCCCceEE----eecCCCeEEEEeCCCccccceeeeCccc
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFT----AANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
+-+++++.||.+.+++.+.......... .....+.++...+..+.. .-..-+..+.|+++...........- .
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~-~ 180 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL-D 180 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc-c
Confidence 4588999999999999875221111110 011111122222221111 11223455666666544333222222 3
Q ss_pred ceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeeccc
Q 012994 291 AVMDIDYSPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 291 ~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.|++++-+|. .+.+++|+.||.+-+||.+.......+...|..+++.+-|+| ++..|+++++||.+--||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4999999994 556788899999999999998777677777779999999999 678899999999999999875
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.96 E-value=6.3e-07 Score=86.84 Aligned_cols=244 Identities=13% Similarity=0.125 Sum_probs=141.6
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.+.|.++.|.-+. +.++.+..+|.|.+-|.++.... ....-...|.+++|+||++.++..+.++++.+-+-.-. .+.
T Consensus 68 d~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~-~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADT-NSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE-PIA 144 (1265)
T ss_pred CcceEEEEEeccc-ceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc-chh
Confidence 4689999999998 88899999999999998776543 22335678999999999999999888888776543111 100
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCc-ceecccCCCceEEEEECCCCCcEEEEEe-
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQP-INSFQWGTDTVISVRFNPAEPNVLATTA- 223 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~- 223 (452)
.... ..-....+.+..+.|-.....+-...|.....+...... ...... .+.=+++.|-.+| .++++..
T Consensus 145 E~~L-------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~-~~~~~~IsWRgDg-~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPL-------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQ-DDHKTSISWRGDG-EYFAVSFV 215 (1265)
T ss_pred cccc-------ccccccccccceecccccceeeecchhhhcccccccccccccchhh-ccCCceEEEccCC-cEEEEEEE
Confidence 0000 000000111122222222112111111111111110000 000111 2233568898888 5666622
Q ss_pred ---cC-CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEee--cCCCeEEEEeCCCccccceee--eCcccceEEE
Q 012994 224 ---SD-RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAA--NEDCNCYSYDSRKLDEAKCVH--MGHESAVMDI 295 (452)
Q Consensus 224 ---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~d~~~~~~~~~~~--~~~~~~v~~~ 295 (452)
.+ ..|++||-...-............+++|-|.|..+.+.. .+++.|.+|..+....-.... ......+..+
T Consensus 216 ~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred eccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 23 789999976221122222344557899999887765554 345678898877654432222 2233448999
Q ss_pred EEcCCCCEEEE---EeCCCeEEEEECCCC
Q 012994 296 DYSPTGREFVT---GSYDRTIRIFQYNGG 321 (452)
Q Consensus 296 ~~s~~g~~l~s---~~~dg~i~iwd~~~~ 321 (452)
+|+.++..||+ ......|++|-+.+-
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecCCCCceeeeecccccceEEEEEecCe
Confidence 99999999987 444555999998764
No 305
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.96 E-value=8.1e-07 Score=81.37 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=150.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeE-EEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG-LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
..++.++.+|.+..+|..+|+.+....... .+.+ ... .+..++.++.+|.+..+|..+++........... ..
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~~ 194 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS---LT 194 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc---cc
Confidence 457778889999999999999887765432 2221 111 2346777788899999999998776554332110 00
Q ss_pred EEEecCCeeeeeecCCCCeEE-EeCCeEEEEeCCCCCcceecccCCC-------ceEEEEECC--CCCcEEEEEecCCeE
Q 012994 159 VYVWKNSFWAVDHQWEGDLFA-TAGAQVDIWNHNRSQPINSFQWGTD-------TVISVRFNP--AEPNVLATTASDRSI 228 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~--~~~~~l~~~~~dg~i 228 (452)
......+ ... ++.+++ ..++.+..+|..+++.+........ ....+..+| .+ ..++.++.+|.+
T Consensus 195 ~~~~~sP----~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~~~g~l 268 (394)
T PRK11138 195 LRGESAP----ATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALAYNGNL 268 (394)
T ss_pred ccCCCCC----EEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEEcCCeE
Confidence 0000011 111 222333 3346788888888876654432110 001111122 13 456677789999
Q ss_pred EEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe
Q 012994 229 TLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 308 (452)
..+|+.+++........... .+. ..+ ..+++++.++.++.+|..+....-...........+..+ .+..|+.++
T Consensus 269 ~ald~~tG~~~W~~~~~~~~-~~~--~~~-~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~ 342 (394)
T PRK11138 269 VALDLRSGQIVWKREYGSVN-DFA--VDG-GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD 342 (394)
T ss_pred EEEECCCCCEEEeecCCCcc-CcE--EEC-CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence 99999998876655432211 111 122 235566778899999987764432211100111111122 245788889
Q ss_pred CCCeEEEEECCCCceeeeeccCCcCcEE-EEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 309 YDRTIRIFQYNGGRSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 309 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
.||.|.+.|..+|+.+....... ..+. ...+ .+..|+.++.||.|+.++.
T Consensus 343 ~~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 343 SEGYLHWINREDGRFVAQQKVDS-SGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCEEEEEECCCCCEEEEEEcCC-CcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999998877664432 2222 2222 2446888899999988764
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=3.1e-09 Score=61.09 Aligned_cols=39 Identities=28% Similarity=0.654 Sum_probs=36.8
Q ss_pred CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
++++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=1.8e-09 Score=62.04 Aligned_cols=38 Identities=37% Similarity=0.658 Sum_probs=35.7
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEe
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD 95 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd 95 (452)
.++.++.+|.+.|++|+|+|++ .+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 4577899999999999999998 9999999999999997
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.91 E-value=3.2e-06 Score=71.32 Aligned_cols=239 Identities=10% Similarity=0.041 Sum_probs=140.5
Q ss_pred EEEEEeCCCCcceEEEeeCCCc-EEEEeCCCCceEEEeecCCCCe--eEEEEccCCCeEEEEeC-----CCcEEEEeCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGD-IRLWDIANRRTVCQYSGHQGAV--RGLTVSTDGRILVSCGT-----DCTVKLWNVPV 140 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~-i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~-----dg~v~iwd~~~ 140 (452)
...++.+|.....++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 3467888965477778877765 6789999998887765433322 24689999999998743 58999999972
Q ss_pred C-CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe--------------------EEEEeCCCCCcceec
Q 012994 141 A-TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ--------------------VDIWNHNRSQPINSF 199 (452)
Q Consensus 141 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------i~i~d~~~~~~~~~~ 199 (452)
+ ..+..+. .+.-.-..+.+.|+|..|+.+.|- +.+.|..+++.+...
T Consensus 87 ~~~ri~E~~------------s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 87 GYRRIGEFP------------SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEeEec------------CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 2 1111111 111123356678899766665432 444555666655542
Q ss_pred c----cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 200 Q----WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 200 ~----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
. .|..+|..+++.+++ ..++..-..|. ..... -+++.-..+..+..+..
T Consensus 155 ~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~-------~~~~~-------------------PLva~~~~g~~~~~~~~ 207 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGD-------PGDAP-------------------PLVALHRRGGALRLLPA 207 (305)
T ss_pred ecCccccccceeeEEecCCC-cEEEEEecCCC-------CCccC-------------------CeEEEEcCCCcceeccC
Confidence 2 255567777777765 23322222211 00000 01222222222222222
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
... ....-...+-+|+++++|.++++.+ .-|.+.+||..++..+...... .+..++-.+++ +++|.+. |
T Consensus 208 p~~-----~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~---D~cGva~~~~~-f~~ssG~-G 277 (305)
T PF07433_consen 208 PEE-----QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP---DACGVAPTDDG-FLVSSGQ-G 277 (305)
T ss_pred ChH-----HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC---ceeeeeecCCc-eEEeCCC-c
Confidence 111 0112345688999999998876555 5778999999999988776543 47777877777 6666554 4
Q ss_pred cE
Q 012994 355 NL 356 (452)
Q Consensus 355 ~i 356 (452)
.+
T Consensus 278 ~~ 279 (305)
T PF07433_consen 278 QL 279 (305)
T ss_pred cE
Confidence 43
No 309
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=9.7e-08 Score=88.21 Aligned_cols=141 Identities=11% Similarity=0.141 Sum_probs=108.9
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccC----CCceEEeecCCCeEEEEeCCCcccccee-eeCccc
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPM----EPMNFTAANEDCNCYSYDSRKLDEAKCV-HMGHES 290 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~ 290 (452)
+.++++|+.||+|.|..+-+.+....+..+.++.+++++|+ ....+++|+..| +.++..+-....... .....+
T Consensus 83 Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG 161 (846)
T KOG2066|consen 83 GEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEG 161 (846)
T ss_pred CceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCcc
Confidence 37899999999999999999999999999999999999998 456688898888 777766544433333 445678
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc-----CcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM-----QRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
+|.++.| .|+++|-++.+| |+|||+.+++.+......+. .-...+.|.++.++ +.|-.| +|+|..++
T Consensus 162 ~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 162 PIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD-SVKICSIK 233 (846)
T ss_pred ceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC-eEEEEEEe
Confidence 9999999 578999888777 99999999887766644431 12346788877654 444444 78888887
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.1e-06 Score=82.16 Aligned_cols=217 Identities=12% Similarity=0.168 Sum_probs=137.5
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEccCCCeEEEEeCCCc-----EEEEeCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-VRGLTVSTDGRILVSCGTDCT-----VKLWNVPVA 141 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~l~s~~~dg~-----v~iwd~~~~ 141 (452)
.|+| |++.+ ..++.|+.+|.|.+.+ .+.+.++.++++... |..+-...+..+|++.+.|+. +++|+++..
T Consensus 27 ~isc--~~s~~-~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSST-GSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCCC-ceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 5555 45666 7899999999998887 344556788888877 554444444478888887654 899999654
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
.... .+..... .+++.. .......++.+++++.+- ..+|+
T Consensus 103 ~~n~---------sP~c~~~-----------------------~ri~~~-------~np~~~~p~s~l~Vs~~l-~~Iv~ 142 (933)
T KOG2114|consen 103 DKNN---------SPQCLYE-----------------------HRIFTI-------KNPTNPSPASSLAVSEDL-KTIVC 142 (933)
T ss_pred CCCC---------Ccceeee-----------------------eeeecc-------CCCCCCCcceEEEEEccc-cEEEE
Confidence 2100 0111100 000000 011135677888888875 78999
Q ss_pred EecCCeEEEEEcc---CCCC--ceEEEeecccceEEEccCCCce-EEeecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 222 TASDRSITLYDLR---MSSP--ARKVIMRTKSNSISWNPMEPMN-FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 222 ~~~dg~i~i~d~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
|-.||.|..+.-. .... ........+++.+++..++... |++. ...|.+|.+....+.......|..++.|-
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCs 220 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCS 220 (933)
T ss_pred EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceee
Confidence 9999999998532 1111 2222345678889988888774 3333 34566666664444455566788889999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 331 (452)
.+++....+++++.. .+.+|+.........+..++
T Consensus 221 s~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~ 255 (933)
T KOG2114|consen 221 SFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGE 255 (933)
T ss_pred ecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCC
Confidence 998765546666544 59999998766666665444
No 311
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=3.4e-08 Score=98.73 Aligned_cols=165 Identities=12% Similarity=0.175 Sum_probs=129.4
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec--ccceEEEccCCCceEEeecCCCeEEEEeCCCcc
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT--KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD 279 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 279 (452)
+-..+.++.-+|..+ +.++|+.||.+++|....++.+......+ .+..+.|+.+|+. +.++..||.+.+|... .
T Consensus 2207 ~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk-~~i~d~dg~l~l~q~~--p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNK-FGIVDGDGDLSLWQAS--P 2282 (2439)
T ss_pred ccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCc-eeeeccCCceeecccC--C
Confidence 345677888888874 67799999999999988888777665443 4456667777665 7788889999999887 3
Q ss_pred ccceeeeCcccceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 280 EAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
.+......|.....++.|-. ..+++++ .++.+.+||..-.......+..|.+.++++++-|..++|++||.+|.|
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 44445557888888888865 5677664 467899999876555555557788999999999999999999999999
Q ss_pred EEeecccccccccCCh
Q 012994 357 RLWKAKASEQLGVLHP 372 (452)
Q Consensus 357 ~iw~~~~~~~~~~~~~ 372 (452)
++||+...+++..++.
T Consensus 2361 ~l~D~rqrql~h~~~~ 2376 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA 2376 (2439)
T ss_pred EEeehHHHHHHHHhhh
Confidence 9999999888877754
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.85 E-value=1.7e-05 Score=71.71 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=78.8
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
......+.+.+++++|+...|+.|+.||.|.+||...+..... ...-.++.++|+|+|.++++|+..|.+.+||+.-
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3346778899999999999999999999999999987644333 1224578999999999999999999999999875
Q ss_pred ccccccCChhhhhhhHHHHHHHHhhccCccccccccCC
Q 012994 364 SEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHR 401 (452)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (452)
+..-..+..++...... -.+..++.+......+.|.+
T Consensus 331 spi~~qLlsEd~~P~~~-L~Ls~yf~~~~~L~~iqW~~ 367 (545)
T PF11768_consen 331 SPIKMQLLSEDATPKST-LQLSKYFRVSSSLVHIQWAP 367 (545)
T ss_pred CccceeeccccCCCccE-EeeehhccCcchhheeEecc
Confidence 54433222221111100 11223445555666666653
No 313
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=6.1e-08 Score=79.43 Aligned_cols=251 Identities=12% Similarity=0.170 Sum_probs=132.8
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC-----CCCCCCCCCCCCeeEEEecCCeeeeeecCCCC---eEEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT-----DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFAT 180 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 180 (452)
...|+++.|...|.||++|...|.|.+|.-....-. ..+..+...-.-+........+..+.|..++. ++++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 457999999999999999999999999976544311 11222222222233333445566666654432 4444
Q ss_pred e-CCeEEEEeCCCCCccee--------ccc-CCCceEEE------EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe
Q 012994 181 A-GAQVDIWNHNRSQPINS--------FQW-GTDTVISV------RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (452)
Q Consensus 181 ~-~~~i~i~d~~~~~~~~~--------~~~-~~~~i~~~------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (452)
+ +.++++|.+........ +.. ..+++++. ..+.. ..++++ ... ++| .-.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~h--d~iiaa-~p~--rvy---------aNaH 171 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEH--DEIIAA-KPC--RVY---------ANAH 171 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccccccc--ceEEEe-ccc--eec---------cccc
Confidence 4 46899998765321100 000 01111110 00100 011111 111 111 1112
Q ss_pred ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--Cc-----ccceEEEEEcCC-CCEEEEEeCCCeEEEE
Q 012994 245 RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--GH-----ESAVMDIDYSPT-GREFVTGSYDRTIRIF 316 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~-----~~~v~~~~~s~~-g~~l~s~~~dg~i~iw 316 (452)
...+++++++.+... .....+-.|-+|++........+.. .| ..-|++..|+|. .+.+.-.+..|.|++-
T Consensus 172 ~yhiNSiS~NsD~et--~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 172 PYHINSISFNSDKET--LLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred eeEeeeeeecCchhe--eeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 223344444444332 2334455555555544332222111 22 235788899994 4556667779999999
Q ss_pred ECCCCceee-------ee--------ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc-cccccCChhhhh
Q 012994 317 QYNGGRSRE-------IY--------HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS-EQLGVLHPREQR 376 (452)
Q Consensus 317 d~~~~~~~~-------~~--------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~ 376 (452)
|++...... .. ...-...|..+.|+++|+++++-+. -+++|||.... .++.++.-+...
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l 324 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDL 324 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHH
Confidence 998432110 00 0111246889999999999998765 48999999754 456666554443
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1.7e-05 Score=67.53 Aligned_cols=215 Identities=12% Similarity=0.112 Sum_probs=134.8
Q ss_pred EEEeCC-CCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEc-cCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 71 CMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-TDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 71 ~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
++.|.+ ++ .++++--..+.|..|+..++.... +.... ...+++. +++ .|+.+..+ .+.++|+.+++.
T Consensus 4 gp~~d~~~g-~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~----- 72 (246)
T PF08450_consen 4 GPVWDPRDG-RLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKV----- 72 (246)
T ss_dssp EEEEETTTT-EEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEE-----
T ss_pred ceEEECCCC-EEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcE-----
Confidence 678888 54 777777788999999998776533 33222 6777887 565 55555554 456668877632
Q ss_pred CCCCCCCCeeEEE----ecCCeeeeeecCCCCeEEEeCC----------eEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 149 STDNSSEPLAVYV----WKNSFWAVDHQWEGDLFATAGA----------QVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 149 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
..+.... .....+.+++.++|.+.++..+ .+..++.. ++ +..+...-...+.++|+|+
T Consensus 73 ------~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 73 ------TVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPD 144 (246)
T ss_dssp ------EEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETT
T ss_pred ------EEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCc
Confidence 1111111 2345678899999998887642 25555555 33 3333333566789999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCC-ce---EE-Eeec---ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 215 EPNVLATTASDRSITLYDLRMSSP-AR---KV-IMRT---KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~-~~---~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
+..++++-+..+.|..|++..... +. .+ .... ....+++..++. ++++....+.|..++.. ......+..
T Consensus 145 g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~~~~~i~~ 222 (246)
T PF08450_consen 145 GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GKLLREIEL 222 (246)
T ss_dssp SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred chheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence 965666778889999999975443 21 12 1222 256788888775 56677788999999988 333333333
Q ss_pred CcccceEEEEEc-CCCCEEEEE
Q 012994 287 GHESAVMDIDYS-PTGREFVTG 307 (452)
Q Consensus 287 ~~~~~v~~~~~s-~~g~~l~s~ 307 (452)
. ...+++++|. ++.+.|+..
T Consensus 223 p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 223 P-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp S-SSSEEEEEEESTTSSEEEEE
T ss_pred C-CCCEEEEEEECCCCCEEEEE
Confidence 3 4478999994 665555543
No 315
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=5.4e-06 Score=76.70 Aligned_cols=239 Identities=15% Similarity=0.170 Sum_probs=149.8
Q ss_pred eEEEeeCCCcEEEEeCCCCceEEEeec-------------CCCCe---------------eEEEEc-----cCCCeEEEE
Q 012994 81 GFFSGSMDGDIRLWDIANRRTVCQYSG-------------HQGAV---------------RGLTVS-----TDGRILVSC 127 (452)
Q Consensus 81 ~l~tg~~dg~i~iwd~~~~~~~~~~~~-------------h~~~v---------------~~l~~~-----~~~~~l~s~ 127 (452)
.|.+|+..|.|+|+-+.+++.+..+.- .+..| ....+| .||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 477999999999999999887665420 00011 111111 167788877
Q ss_pred eC-CCcEEEEeCCCCCCCCCCCCCC---CCC-----CCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCc
Q 012994 128 GT-DCTVKLWNVPVATLTDSDDSTD---NSS-----EPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP 195 (452)
Q Consensus 128 ~~-dg~v~iwd~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~ 195 (452)
.. +..|...++...++......+. ... .+...+...+.-..+-++++|..+...+ +.+.+.|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 64 5566666665544332222111 111 1222233333444556677887664443 3477788887766
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEe---------------------------------------cCCeEEEEEccC-
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTA---------------------------------------SDRSITLYDLRM- 235 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~---------------------------------------~dg~i~i~d~~~- 235 (452)
...+.... ....+.++|++...++++. .++.|.+.|.++
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~ 306 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKA 306 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCcc
Confidence 55554422 3345666666643333321 235688888887
Q ss_pred ----CCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc----------eeeeCcccceEEEEEcCCC
Q 012994 236 ----SSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK----------CVHMGHESAVMDIDYSPTG 301 (452)
Q Consensus 236 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----------~~~~~~~~~v~~~~~s~~g 301 (452)
......+........+.++|++.++++++..+..+.++|+.+..... .-...-.......+|.++|
T Consensus 307 ~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G 386 (635)
T PRK02888 307 ANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRG 386 (635)
T ss_pred ccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCC
Confidence 45666677788889999999999999999999999999998865311 0000112234467899999
Q ss_pred CEEEEEeCCCeEEEEECCC
Q 012994 302 REFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 302 ~~l~s~~~dg~i~iwd~~~ 320 (452)
+...|-..|..|..||+..
T Consensus 387 ~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 387 NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CEEEeEeecceeEEEehHH
Confidence 8888888899999999875
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.76 E-value=7.2e-06 Score=70.10 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=160.0
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC----------CCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT----------DCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+.+.++|..+++.+..+.. +-.-.+..+|+++.+++++. .-.|.+||..+.........+.....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~--- 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA--- 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh---
Confidence 4799999999998877763 33445778999998887542 33699999987654332222111000
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
........+.++.++++++... ..|.|.|+...+.+..+... + |....|.++.-+.+-+.||.+.-..+.
T Consensus 92 --~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 92 --QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp ---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEET
T ss_pred --eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEEC
Confidence 0011234567888999888876 36999999999988877642 2 233334444567788889999999998
Q ss_pred CCCCceEEEee--ccc-----ceEEEccCCCceEEeecCCCeEEEEeCCCccccc-eeeeC----------cccceEEEE
Q 012994 235 MSSPARKVIMR--TKS-----NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-CVHMG----------HESAVMDID 296 (452)
Q Consensus 235 ~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~~----------~~~~v~~~~ 296 (452)
........... ... ..-.+...+ ..++-.+-+|.++..|+....... ....- ..+.-.-++
T Consensus 166 ~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 166 ADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp STSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE
T ss_pred CCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee
Confidence 44333221110 010 111121222 223446677888887776543111 00000 011233467
Q ss_pred EcCCCCEEEEEe---CCC-------eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEEe-eCCCcEEEeecccc
Q 012994 297 YSPTGREFVTGS---YDR-------TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISG-SDDTNLRLWKAKAS 364 (452)
Q Consensus 297 ~s~~g~~l~s~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~iw~~~~~ 364 (452)
+++..+.|++-- .+| .|.++|+.+++.+..+... .++.++..+.+.+ +|++. ..++.+.+||..+|
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 777555544321 122 3888999999988887665 4588999998766 56554 45789999999999
Q ss_pred cccccCC
Q 012994 365 EQLGVLH 371 (452)
Q Consensus 365 ~~~~~~~ 371 (452)
+.+..+.
T Consensus 323 k~~~~~~ 329 (342)
T PF06433_consen 323 KLVRSIE 329 (342)
T ss_dssp -EEEEE-
T ss_pred cEEeehh
Confidence 9987764
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=9.6e-09 Score=95.59 Aligned_cols=207 Identities=13% Similarity=0.140 Sum_probs=140.8
Q ss_pred ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
+....+..|....+|++|+-+.++|+.|+..|.|+++++.+|..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------------------------------ 1135 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------------------------------ 1135 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------------------------------
Confidence 45566778889999999999999999999999999999876632
Q ss_pred EeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC-eEEEEEccCC-CCceEEEeecccceEEEccCC
Q 012994 180 TAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-SITLYDLRMS-SPARKVIMRTKSNSISWNPME 257 (452)
Q Consensus 180 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (452)
.....+|...|+-+.-+-+|..+|.+++... -..+|++... ...+.+ ....++.|+..
T Consensus 1136 ----------------e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf---~ed~~vkFsn~- 1195 (1516)
T KOG1832|consen 1136 ----------------EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSF---DEDKAVKFSNS- 1195 (1516)
T ss_pred ----------------cccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccc---cccceeehhhh-
Confidence 3445567888888888877754444444333 4678988652 222222 22334555544
Q ss_pred CceEEeecCCCeEEEEeCCCccccceeeeC---cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCc
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMG---HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQR 334 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 334 (452)
...-+.|+......+||..+.......+.+ ....-+...|||+..+++ .|| .+||++....+..+.... .
T Consensus 1196 ~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft--~ 1268 (1516)
T KOG1832|consen 1196 LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT--D 1268 (1516)
T ss_pred HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe--e
Confidence 233455666678899999987766554432 222346788999988776 466 589999876666654332 1
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhh
Q 012994 335 VFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPRE 374 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 374 (452)
-..-.|+|.|.-++.-+ -|||+.+.+++.....-.
T Consensus 1269 ~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1269 YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred cccccccCCCceEEeec-----hhhhhHHHHHHhcCcccc
Confidence 22346999999888765 499999999887765443
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=4e-05 Score=61.88 Aligned_cols=66 Identities=8% Similarity=0.034 Sum_probs=50.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
++++.|+..|.+++.+.++|.....+..-..-=......+++..+..|+.|++....|..+...+.
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred CEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 678899999999999999998877776432221223445688999999999999999987765443
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.70 E-value=1.6e-05 Score=74.71 Aligned_cols=275 Identities=12% Similarity=0.075 Sum_probs=160.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCC------Cee--EEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG------AVR--GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~------~v~--~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (452)
..++.++.++.|.-.|..+++.+..+..... .+. .+... ++..++.++.+|.|.-+|..+++.........
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4577788889999999999988877653322 010 11111 22577888889999999999998765544332
Q ss_pred CCCCCeeEEEecCCeeeeeecCCCCeEEEe----------CCeEEEEeCCCCCcceecccCCCc----------------
Q 012994 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATA----------GAQVDIWNHNRSQPINSFQWGTDT---------------- 205 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~i~d~~~~~~~~~~~~~~~~---------------- 205 (452)
..... ...... ..+. ++.+++.. .+.+..+|..+++.+..+......
T Consensus 141 ~~~~~---~~i~ss---P~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 141 QVPPG---YTMTGA---PTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred CcCcc---eEecCC---CEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 11000 000000 0011 12222221 246788888888877665432110
Q ss_pred ----e-EEEEECCCCCcEEEEEecCC------------------eEEEEEccCCCCceEEEeeccc-------ceEEEc-
Q 012994 206 ----V-ISVRFNPAEPNVLATTASDR------------------SITLYDLRMSSPARKVIMRTKS-------NSISWN- 254 (452)
Q Consensus 206 ----i-~~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~- 254 (452)
+ ...++.+.+ .+++.++.++ .|.-+|+.+++........... ......
T Consensus 214 ~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 214 GGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 0 112333333 4666776555 7999999999988876543210 011111
Q ss_pred ---cCCC--ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE------------------eCCC
Q 012994 255 ---PMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG------------------SYDR 311 (452)
Q Consensus 255 ---~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~------------------~~dg 311 (452)
-++. ..+++++.+|.++.+|..+.+..-..... ...++.+| ..++.+ ..+|
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G 366 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKG 366 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccCcccccCCCCCCCce
Confidence 1121 35777888999999999887665443221 11233444 223322 2467
Q ss_pred eEEEEECCCCceeeeeccCCc-------CcE--EEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 312 TIRIFQYNGGRSREIYHTKRM-------QRV--FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~~~~~~~-------~~v--~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+.-.|+.+|+.+........ .+. ..+.. .+.+|+.++.||.|+.+|..+|+.+-..+
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 888899999988776644310 111 11222 55788889999999999999999886654
No 320
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=9.4e-08 Score=79.49 Aligned_cols=152 Identities=9% Similarity=0.143 Sum_probs=105.7
Q ss_pred EEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc---ccceeeeCcccceEEEE
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD---EAKCVHMGHESAVMDID 296 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~v~~~~ 296 (452)
++.+.+-.+-+-|+.++... .+.....+-+..|... ..++..|..+|.|..+|++... .-.....-|.+.|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 45566777888888776432 2223344444444443 3458889999999999998651 11122235888999988
Q ss_pred EcC-CCCEEEEEeCCCeEEEEECCCCce---eeeeccCCc-CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 297 YSP-TGREFVTGSYDRTIRIFQYNGGRS---REIYHTKRM-QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 297 ~s~-~g~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.-. ++++|++.+.+|+|++||++.-++ +..+..+-. ..-.-+-..+....++++|+|...+||.+.+|.++.++.
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 776 788999999999999999987666 444433321 111123345567789999999999999999999998886
Q ss_pred hh
Q 012994 372 PR 373 (452)
Q Consensus 372 ~~ 373 (452)
-.
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=2e-06 Score=79.88 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=109.5
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.+.++|++++. ..|+-|+.+|.|++.+.. +.. .+...|... ..+|.+++||+.||+|.|-.+.+.
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~---- 103 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD---- 103 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCC----
Confidence 55778888875 679999999999999975 444 444446554 568999999999999999988765
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCC-----CCeEEEeCCe-EEEEeCC--CCCcceecccCCCceEEEEECCCCCc
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWE-----GDLFATAGAQ-VDIWNHN--RSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-i~i~d~~--~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
..........++.+++++|+ .+.++++|.. +.++.-+ ..+....+....++|.++.|.. +
T Consensus 104 ---------~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~ 171 (846)
T KOG2066|consen 104 ---------DEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---N 171 (846)
T ss_pred ---------ccceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecC---c
Confidence 44555677788889999987 5677777733 6665422 1122224555678999999983 6
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
++|-++.+| |++||..+.+.+..+.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccC
Confidence 777777666 8999998877665543
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.67 E-value=5.4e-05 Score=68.18 Aligned_cols=266 Identities=14% Similarity=0.125 Sum_probs=146.8
Q ss_pred CCCCcceEEEe---------eCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 75 NPNYLKGFFSG---------SMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 75 ~~~~~~~l~tg---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
|||+ ++++.. +..+.+.|+|+.+++...... ....+....|+|+|+.++... ++.|.+++..++....
T Consensus 1 S~d~-~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDG-KFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTS-SEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCC-CeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 5777 555542 335679999999876544333 267889999999999998875 5789999887663322
Q ss_pred CCCCCCCCCCCeeEEEe---------cCCeeeeeecCCCCeEEEeC--------------------------------C-
Q 012994 146 SDDSTDNSSEPLAVYVW---------KNSFWAVDHQWEGDLFATAG--------------------------------A- 183 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--------------------------------~- 183 (452)
..... ........ -..-..+.|+|++..++... |
T Consensus 78 lT~dg----~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 78 LTTDG----EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp SES------TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred ecccc----ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 11111 00000000 12335677888888776431 0
Q ss_pred -----eEEEEeCCCCCccee-----cccCCCceEEEEECCCCCcEEEEEe-cC---CeEEEEEccCCCCceEEEeec---
Q 012994 184 -----QVDIWNHNRSQPINS-----FQWGTDTVISVRFNPAEPNVLATTA-SD---RSITLYDLRMSSPARKVIMRT--- 246 (452)
Q Consensus 184 -----~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~-~d---g~i~i~d~~~~~~~~~~~~~~--- 246 (452)
.+.++|+.+++.... +......+..+.|.+++..+++.-. .+ ..+.++|..++..........
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 145566665554211 1223456888999988742443332 22 246677777655544333221
Q ss_pred --ccceEEEc-cCCCceEEeecCCCe--EEEEeCCCccccceeeeCcccceEE-EEEcCCCCEEE-EEeCC----CeEEE
Q 012994 247 --KSNSISWN-PMEPMNFTAANEDCN--CYSYDSRKLDEAKCVHMGHESAVMD-IDYSPTGREFV-TGSYD----RTIRI 315 (452)
Q Consensus 247 --~~~~~~~~-~~~~~~~~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~-s~~~d----g~i~i 315 (452)
......+. +++..++.....+|. ++.++..... ...+....-.|+. +.++++++.|. ++..+ ..|+.
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~--~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK--PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE--EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc--eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 12345554 777777776667774 4555555433 2233333445644 67888776544 55542 35666
Q ss_pred EECC-CCceeeeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 316 FQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 316 wd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
-++. .+.......... .. ..+.|||++++++-.+
T Consensus 312 v~~~~~~~~~~LT~~~~-~~-~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDSGGEPKCLTCEDG-DH-YSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTETTEEEESSTTSS-TT-EEEEE-TTSSEEEEEE
T ss_pred EEeCCCCCeEeccCCCC-Cc-eEEEECCCCCEEEEEE
Confidence 6777 444443332221 12 7899999999887543
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.65 E-value=2.9e-08 Score=89.23 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=131.4
Q ss_pred cccEEEEEeCCCCc-ceEEEeeCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEcc-CCCeEEEEe----CCCcEEEEe
Q 012994 66 RDGISCMAKNPNYL-KGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVST-DGRILVSCG----TDCTVKLWN 137 (452)
Q Consensus 66 ~~~V~~~~~~~~~~-~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~~----~dg~v~iwd 137 (452)
...+.|++++-+.. ..++.|..+|.|.+-.+....- .....+|....++++|++ |.++||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45677888766542 5788999999999988764422 233467888999999998 667787773 367899999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCc
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
+.++-.. |.. ...| .+ .......+++|..+. .
T Consensus 136 i~s~ltv-----------Pke---------~~~f-------------------s~--------~~l~gqns~cwlrd~-k 167 (783)
T KOG1008|consen 136 INSLLTV-----------PKE---------SPLF-------------------SS--------STLDGQNSVCWLRDT-K 167 (783)
T ss_pred cccccCC-----------Ccc---------cccc-------------------cc--------ccccCccccccccCc-c
Confidence 9765210 000 0000 00 012233477888544 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEe-CCCccccceeeeCccc----ce
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYD-SRKLDEAKCVHMGHES----AV 292 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d-~~~~~~~~~~~~~~~~----~v 292 (452)
++++|.....+.++|++.............+..+...|-....++... ++.+-+|| .++.+.+......... .+
T Consensus 168 lvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l 246 (783)
T KOG1008|consen 168 LVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQL 246 (783)
T ss_pred hhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccce
Confidence 888999999999999985432222222223445666775555455444 99999999 6666655544433333 38
Q ss_pred EEEEEcCCCC-EEEEE-eCCCeEEEEECC
Q 012994 293 MDIDYSPTGR-EFVTG-SYDRTIRIFQYN 319 (452)
Q Consensus 293 ~~~~~s~~g~-~l~s~-~~dg~i~iwd~~ 319 (452)
..++|+|... .+++. -..++|+.+|+.
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEeccc
Confidence 8999999432 34444 456789999975
No 324
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.3e-06 Score=73.00 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=114.3
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEee
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (452)
++..+..+.+....+..+...|.+++|+|....++..++.+..|+|.|+++......+.....+.+++|.-+....+.+|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 66666666666777777888999999999886689999999999999999999999999889999999999999999999
Q ss_pred cCCCeEEEEeCCCccccceeeeC--cccceEEEEE------cCCCCEEEEEeCCCeEEEEECCC--CceeeeeccCCcCc
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHMG--HESAVMDIDY------SPTGREFVTGSYDRTIRIFQYNG--GRSREIYHTKRMQR 334 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~------s~~g~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~ 334 (452)
..+|.|++||++..+.+...+.+ ...+|..++. .+.|.+|+....+ +.+|++.. +...........+.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcc
Confidence 99999999999987765544433 1234444332 3345555555443 56676643 22223333333355
Q ss_pred EEEEEEcCCCC
Q 012994 335 VFCVKFSCDAS 345 (452)
Q Consensus 335 v~~~~~s~~~~ 345 (452)
..++...+-.+
T Consensus 333 cismqy~~~sn 343 (463)
T KOG1645|consen 333 CISMQYHGVSN 343 (463)
T ss_pred eeeeeecCccc
Confidence 66666665333
No 325
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=5.5e-07 Score=75.06 Aligned_cols=152 Identities=6% Similarity=0.100 Sum_probs=115.4
Q ss_pred EEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe
Q 012994 83 FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW 162 (452)
Q Consensus 83 ~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (452)
++.+.+-.|-+-|+++|-.. .|. ..+.|.++.|...+++++.|..+|.|..+|++... .....+...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn--------qG~~~~a~rlyh 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN--------QGNGWCAQRLYH 297 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecc--------cCCCcceEEEEc
Confidence 55556777889998887543 344 56789999999888999999999999999998762 122467778888
Q ss_pred cCCeeeeeecC-CCCeEEEeC--CeEEEEeCCCCCc---ceecccCCCceEE--EEECCCCCcEEEEEecCCeEEEEEcc
Q 012994 163 KNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQP---INSFQWGTDTVIS--VRFNPAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~---~~~~~~~~~~i~~--~~~~~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
+..++++..-. ++..+.+.+ |.|.+||++.-+. +..+.+|.+.-.- +.+.+.. ..+++++.|...+||.++
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecc
Confidence 88998887766 667777766 7899999987766 7778777553332 3334444 577889999999999999
Q ss_pred CCCCceEEEee
Q 012994 235 MSSPARKVIMR 245 (452)
Q Consensus 235 ~~~~~~~~~~~ 245 (452)
.+..+.++..+
T Consensus 377 ~ghLl~tipf~ 387 (425)
T KOG2695|consen 377 SGHLLCTIPFP 387 (425)
T ss_pred cCceeeccCCC
Confidence 98887776544
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.52 E-value=6.1e-05 Score=69.41 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=92.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE-eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
...|.--+++..+ .+++.|+..|.+++|+-..++.... ..+-.+.+..+..+++..++|.|+..|.|.++.+......
T Consensus 33 ~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCC-ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3344444455555 8899999999999999766654322 2234456677788888888999999999999988764321
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC----CcceecccCCCceEEEEECC
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS----QPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~ 213 (452)
........ ...+...|++++|++++..+.+|+ |.|.+-.+++. ...+.+-...+.|..+....
T Consensus 112 ~~~~~t~~------d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 112 DLDYVTPC------DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cceeeccc------cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 11110000 011567899999999999999998 66777666652 12223333456777777663
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.50 E-value=0.00066 Score=59.58 Aligned_cols=273 Identities=16% Similarity=0.189 Sum_probs=135.1
Q ss_pred EeCCCCcceEEEeeCCC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 73 AKNPNYLKGFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
+|.++|.++|+.+..|| .+.+.|+.+++..+.-.+-........++|+++.++-......|.-.|+.+.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~------- 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE------- 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-------
Confidence 56788866666666666 566778888876654443223344567788888876665556888888887632
Q ss_pred CCCCCCeeEEEecCCee-eeee--cCCCCeEEEeC------------------------CeEEEEeCCCCCcceecccCC
Q 012994 151 DNSSEPLAVYVWKNSFW-AVDH--QWEGDLFATAG------------------------AQVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~------------------------~~i~i~d~~~~~~~~~~~~~~ 203 (452)
..++..+.... ...+ +.++..++... ..|.-.|+.+++....+. ..
T Consensus 115 ------~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~ 187 (386)
T PF14583_consen 115 ------RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DT 187 (386)
T ss_dssp ------EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ES
T ss_pred ------EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cC
Confidence 12222222221 1222 33444443221 125666777777554444 35
Q ss_pred CceEEEEECCCCCcEEEEEec---CCe-EEEEEccCCCCceEE----EeecccceEEEccCCCceEEeec----CCCeEE
Q 012994 204 DTVISVRFNPAEPNVLATTAS---DRS-ITLYDLRMSSPARKV----IMRTKSNSISWNPMEPMNFTAAN----EDCNCY 271 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~---dg~-i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~ 271 (452)
..+..+.|+|.++.+|+-|-+ +.. -+||-+++....... .......---|.|+|..+...+. .+..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 677889999999888877654 222 367876643322211 11122334468999988766543 234667
Q ss_pred EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC----------------eEEEEECCCCceeeeecc------
Q 012994 272 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR----------------TIRIFQYNGGRSREIYHT------ 329 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~------ 329 (452)
-+|..+...... ....+...+..++||++++-=+.|. .|+++++..+........
T Consensus 268 ~~d~~t~~~~~~---~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v 344 (386)
T PF14583_consen 268 GYDPDTGERRRL---MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKV 344 (386)
T ss_dssp EE-TTT--EEEE---EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------
T ss_pred eeCCCCCCceEE---EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCccee
Confidence 777776544321 1222444566788998876433332 466788887665422211
Q ss_pred ---CCcCcEEEEEEcCCCCEEE-EeeCCCcEEEeecc
Q 012994 330 ---KRMQRVFCVKFSCDASYVI-SGSDDTNLRLWKAK 362 (452)
Q Consensus 330 ---~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~ 362 (452)
.....=-...|+|||++|+ ++...|...||-++
T Consensus 345 ~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 345 LDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1111124579999999865 55567888877554
No 328
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=4.4e-06 Score=78.12 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=63.3
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
+++++|+|.. -.|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..|+|+..-|.|.+|....
T Consensus 62 atSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHH-HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 5679999986 7888999999999999887776666678999999999999999999999999999998863
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=4.4e-06 Score=78.12 Aligned_cols=313 Identities=14% Similarity=0.140 Sum_probs=165.7
Q ss_pred EEEEeCCCCcceEEEeeC----CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 70 SCMAKNPNYLKGFFSGSM----DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 70 ~~~~~~~~~~~~l~tg~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
+-..|+|.. .+|++++. .|+|-||- ++|++..... -.-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 19 ti~SWHPse-PlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--- 92 (1416)
T KOG3617|consen 19 TISSWHPSE-PLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--- 92 (1416)
T ss_pred cccccCCCC-ceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce---
Confidence 345699997 78887753 58888885 5676543322 12235679999988889999889999999986552
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecc--cC--CC--ceEEEEECCCCCc
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQ--WG--TD--TVISVRFNPAEPN 217 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~--~~--~~--~i~~~~~~~~~~~ 217 (452)
.......++.++..+.|+++|..+++++ |.+.+|.+.....++... .| .. ...|...++++..
T Consensus 93 ---------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee 163 (1416)
T KOG3617|consen 93 ---------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREE 163 (1416)
T ss_pred ---------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHH
Confidence 2333445677888999999999999998 689999876432222211 11 11 2334444554321
Q ss_pred E-----EEEEecCCeEE-EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee-------
Q 012994 218 V-----LATTASDRSIT-LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV------- 284 (452)
Q Consensus 218 ~-----l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------- 284 (452)
. .++.+++.-+- .++.+........... -.| .+..|..+..+|.++..|-.........
T Consensus 164 ~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ks-------gv~-~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQm 235 (1416)
T KOG3617|consen 164 KFKLAKAAVTGDESALDEPFNWKESLAERSDEKS-------GVP-KGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQM 235 (1416)
T ss_pred hhhhhhhhccCchhhhcccccCccchhhcccccc-------CCC-CCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHH
Confidence 1 23333333222 3332211111111111 112 2334666777777777774432111100
Q ss_pred -eeCcccceEEE--------EEcC-CCCE---------EEEEeCCCeEEEEECCCCce--eeeeccCCcCcEEEEEEcCC
Q 012994 285 -HMGHESAVMDI--------DYSP-TGRE---------FVTGSYDRTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 285 -~~~~~~~v~~~--------~~s~-~g~~---------l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~ 343 (452)
+.+....|..+ -+.+ .|.. -=.|+..|.|-+=... |-. -..+.......++|++++..
T Consensus 236 Lf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~e~ge~~~c~cY~~~ 314 (1416)
T KOG3617|consen 236 LFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGLELGEGILCMCYGEK 314 (1416)
T ss_pred HHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhhhcCCceEEEEEecc
Confidence 00111111111 1111 1100 0011222222111111 100 11111222357999999999
Q ss_pred CCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHH
Q 012994 344 ASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASL 413 (452)
Q Consensus 344 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 413 (452)
+..|..|...|++.+|.-.....++.- .. ..+. +.......+.|..+.|.|..|-+......+
T Consensus 315 ~~~l~agt~~gnv~~w~~v~~~f~g~p-~~--d~w~----l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~ 377 (1416)
T KOG3617|consen 315 EIRLWAGTKEGNVTIWLDVNKGFQGDP-TI--DVWT----LNGKRESLGKISLIRWGPIKSTAAVNTEED 377 (1416)
T ss_pred ceEEEecccCCcEEEeeecCccccCCC-Cc--ceEE----ecCchhhccceEEEEeccccchhhhhhhhh
Confidence 999999999999999975443232211 11 1111 112224466788899999888766655543
No 330
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.45 E-value=3.4e-06 Score=79.42 Aligned_cols=146 Identities=16% Similarity=0.309 Sum_probs=102.1
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC---------CCcEEEEeC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT---------DCTVKLWNV 138 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~---------dg~v~iwd~ 138 (452)
.|+-|..+ + +++++|...|+|.+-|..+.+.++++.+|++.|.++.. .|+.|++||. |..|+|||+
T Consensus 179 ~v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDL 253 (1118)
T KOG1275|consen 179 GVTIMRYN--N-RNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDL 253 (1118)
T ss_pred ceEEEEec--C-cEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhh
Confidence 34444443 3 78999999999999999999999999999999987666 5789999975 567899999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC--CCe-EEEeCCeEEEEeCCC---C-CcceecccCCCceEEEEE
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--GDL-FATAGAQVDIWNHNR---S-QPINSFQWGTDTVISVRF 211 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~i~d~~~---~-~~~~~~~~~~~~i~~~~~ 211 (452)
+..+.+........+ .-+.|.|. ..+ +++.+|...+.|..+ . ..+..+......+..+.+
T Consensus 254 Rmmral~PI~~~~~P-------------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDi 320 (1118)
T KOG1275|consen 254 RMMRALSPIQFPYGP-------------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDI 320 (1118)
T ss_pred hhhhccCCcccccCc-------------hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEe
Confidence 877654333222211 12233332 222 334457888888332 2 112233333455899999
Q ss_pred CCCCCcEEEEEecCCeEEEEE
Q 012994 212 NPAEPNVLATTASDRSITLYD 232 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d 232 (452)
++++ +.++.|..+|.|.+|.
T Consensus 321 Ssn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 321 SSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC-ceEEEecccCcEeeec
Confidence 9988 7999999999999997
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=3.5e-06 Score=75.97 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=64.4
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
.+...|.|++++|+. ..|+.|+.||+|.+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 467899999999998 99999999999999998765332 33345567899999999999999999999999986553
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.43 E-value=1.4e-05 Score=74.13 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=134.3
Q ss_pred eCCCCcceE-EEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC----cEEEEeCCCCCCCCCCC
Q 012994 74 KNPNYLKGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC----TVKLWNVPVATLTDSDD 148 (452)
Q Consensus 74 ~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~v~iwd~~~~~~~~~~~ 148 (452)
++||| +.+ .+.-..+.+.+.|.++.+....+.- .+....+.++++|+++++.+.+. ++..-+....
T Consensus 200 lpnDG-k~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~------- 270 (635)
T PRK02888 200 LPNDG-KDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER------- 270 (635)
T ss_pred cCCCC-CEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccC-------
Confidence 45566 433 2334456788888888777666653 33456788999999998886432 2222222110
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCC-----CCcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNR-----SQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
.....+.+.. .-.+.++|++....++.|.++|..+ .+.+..+.. ......+.++|++..+++++.
T Consensus 271 ------d~~vvfni~~---iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 271 ------DWVVVFNIAR---IEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred ------ceEEEEchHH---HHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCC
Confidence 1111111111 1134557777777777899999988 344444443 567788999999977788888
Q ss_pred cCCeEEEEEccCCCC------------ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc---------cccc
Q 012994 224 SDRSITLYDLRMSSP------------ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL---------DEAK 282 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~ 282 (452)
.+.++.++|+.+.+. .............+|.+++. .+.+-.-|..+..|++... ....
T Consensus 341 lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~ 419 (635)
T PRK02888 341 LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIV 419 (635)
T ss_pred CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCC-EEEeEeecceeEEEehHHHHHHhccccCCcce
Confidence 899999999987653 33444455566778888764 6788888999999998752 1111
Q ss_pred e-----eeeCcccceEEEEEcCCCCEEEEEe
Q 012994 283 C-----VHMGHESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 283 ~-----~~~~~~~~v~~~~~s~~g~~l~s~~ 308 (452)
. ...+|......=.-.|||++|++..
T Consensus 420 ~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 420 QKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 1 1124433333334467888888764
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.39 E-value=0.00077 Score=61.65 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=38.0
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
.|.||+. .|+.+..+.-..+.|.++.|+.+. .|+....||.++++|+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 4999996 577777765444899999999864 56677789999999985
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=0.00028 Score=64.50 Aligned_cols=229 Identities=12% Similarity=0.148 Sum_probs=117.2
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-C
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-A 183 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 183 (452)
+....-....+.++|+|+.++.+ .||.-.|+..... .. ...+....+.|.+.+.+.+... .
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~----------------r~-k~~G~g~~~vw~~~n~yAv~~~~~ 89 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----------------RN-KAFGSGLSFVWSSRNRYAVLESSS 89 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT----------------EE-EEEEE-SEEEE-TSSEEEEE-TTS
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC----------------cc-cccCceeEEEEecCccEEEEECCC
Confidence 33445567899999999988885 4678888873211 11 1123344567777666555553 5
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (452)
.|.|+.--+......+... ..+..+-. | .+|...+. +.|.+||..+++.+..+.... +..+.|++++..+.++
T Consensus 90 ~I~I~kn~~~~~~k~i~~~-~~~~~If~---G-~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 90 TIKIYKNFKNEVVKSIKLP-FSVEKIFG---G-NLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALV 162 (443)
T ss_dssp -EEEEETTEE-TT-----S-S-EEEEE----S-SSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE
T ss_pred eEEEEEcCccccceEEcCC-cccceEEc---C-cEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEE
Confidence 6888643344443344332 22333332 4 56665554 489999999999888887654 7899999999887777
Q ss_pred ecCCCeEEEEeCC--------CccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcE
Q 012994 264 ANEDCNCYSYDSR--------KLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 335 (452)
Q Consensus 264 ~~~~~~i~~~d~~--------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 335 (452)
+...-.+.-++.. ..+........-...|.+.+|..+ .++-.+.. .++. +-.|......+.. .++
T Consensus 163 t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--~~~ 235 (443)
T PF04053_consen 163 TKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--KPL 235 (443)
T ss_dssp -S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S--S--
T ss_pred eCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC--Cce
Confidence 6555555555554 011122222222456788888655 33333333 6666 4445443333222 467
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
.-+.+.+..+.++....|+.+..+.+....
T Consensus 236 yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 236 YLLGYLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence 778888877788888889888888776543
No 335
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=3.9e-05 Score=72.15 Aligned_cols=193 Identities=11% Similarity=0.120 Sum_probs=119.4
Q ss_pred eecCCCCeEEEeCCeEEEEeCCCCCcc-eecccCCCceEEEEECCCCCcEEEEEecCC-----eEEEEEccCCC------
Q 012994 170 DHQWEGDLFATAGAQVDIWNHNRSQPI-NSFQWGTDTVISVRFNPAEPNVLATTASDR-----SITLYDLRMSS------ 237 (452)
Q Consensus 170 ~~~~~~~~~~~~~~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~------ 237 (452)
++++.+..++.++....||-++..... ..++.+...+...-+.-++.++|++.+.|+ .+++||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 456666777777766566655555444 777776666444444444557888877765 48999986542
Q ss_pred Cc---eEEEe-----ecccceEEEccCCCceEEeecCCCeEEEEeCCCc---cccceeeeCcccceEEEEEcCCCCEEEE
Q 012994 238 PA---RKVIM-----RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL---DEAKCVHMGHESAVMDIDYSPTGREFVT 306 (452)
Q Consensus 238 ~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~s 306 (452)
++ +.+.. ..+..+++.+.+ -..+++|-.+|.|..+.-.-. ............+|+++++..++..++-
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 12 11111 123345566655 556888999999999864322 1222222344578999999999987333
Q ss_pred EeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 307 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 307 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
...-..|.+|.+....+.......+..++.|.++++....+++++. ..+.+|+....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCc
Confidence 3334569999998544333435556678899999875553444443 35777776643
No 336
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.38 E-value=0.00078 Score=63.50 Aligned_cols=245 Identities=9% Similarity=0.083 Sum_probs=136.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCC--eeEEEEcc--CCCeEEEEe---------CCCcEEEEeCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA--VRGLTVST--DGRILVSCG---------TDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~--~~~~l~s~~---------~dg~v~iwd~~~~~~~~~ 146 (452)
..++.++.+|.|.-+|..+|+.+..+...... -..+.-+| .+..++.++ .+|.+..+|..+++..-.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 56777888999999999999998776543221 01111122 124455553 367889999998877655
Q ss_pred CCCCCCCCCCee--------EEEecCCe-eeeeecCCCCeEEEeC--C------------------eEEEEeCCCCCcce
Q 012994 147 DDSTDNSSEPLA--------VYVWKNSF-WAVDHQWEGDLFATAG--A------------------QVDIWNHNRSQPIN 197 (452)
Q Consensus 147 ~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~--~------------------~i~i~d~~~~~~~~ 197 (452)
............ .......+ ....+.+.+..++.+. + .+.-+|..+++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 443211100000 00000111 1223333333333332 2 58888999998887
Q ss_pred ecccCCCceE------EEEEC----CCC--CcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe--
Q 012994 198 SFQWGTDTVI------SVRFN----PAE--PNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA-- 263 (452)
Q Consensus 198 ~~~~~~~~i~------~~~~~----~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 263 (452)
.++....... ...+. -++ ...+++++.+|.+...|.++++.+....... ..+...| ..+++.
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~ 346 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAF 346 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccc
Confidence 7643211110 00111 112 1257788889999999999999888765431 1122222 222221
Q ss_pred ---------------ecCCCeEEEEeCCCccccceeeeCc-c------cce--EEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 264 ---------------ANEDCNCYSYDSRKLDEAKCVHMGH-E------SAV--MDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 264 ---------------~~~~~~i~~~d~~~~~~~~~~~~~~-~------~~v--~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
...++.+.-+|..+.+..-....+. . .+. ..+.. .+..|+.++.||.|+.+|..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECC
Confidence 1245778888887765544333220 0 111 11222 55788889999999999999
Q ss_pred CCceeeeeccC
Q 012994 320 GGRSREIYHTK 330 (452)
Q Consensus 320 ~~~~~~~~~~~ 330 (452)
+|+.+......
T Consensus 425 tG~~lW~~~~~ 435 (488)
T cd00216 425 TGKELWKFRTP 435 (488)
T ss_pred CCceeeEEECC
Confidence 99998887654
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.38 E-value=0.00016 Score=61.30 Aligned_cols=193 Identities=12% Similarity=0.144 Sum_probs=119.6
Q ss_pred ccccccccccEEEEEeCCCCcceEEEe-----eCCCcEEEEeCC-CCceEEEeecCCCCeeEEEEccCCCeEEEEeC---
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSG-----SMDGDIRLWDIA-NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT--- 129 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg-----~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~--- 129 (452)
-+.|.|| -.|++|| ++|++. +..|.|-|||.. +.+.+.++..|.-.-..+.+.|||+.|+.+-.
T Consensus 49 gRHFyGH------g~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 49 GRHFYGH------GVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred CCEEecC------EEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 3455555 3699999 788775 446899999998 66778888888877888999999988877621
Q ss_pred ----CC-----------cEEEEeCCCCCCCCCCCCCCCCCCCeeE--EEecCCeeeeeecCCCCeEEEeC--Ce------
Q 012994 130 ----DC-----------TVKLWNVPVATLTDSDDSTDNSSEPLAV--YVWKNSFWAVDHQWEGDLFATAG--AQ------ 184 (452)
Q Consensus 130 ----dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~------ 184 (452)
.| ++...|..++.++.. ... ..+..++.-+++..+|..+.... +.
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q----------~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARSGALLEQ----------VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPP 191 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCCCceeee----------eecCccccccceeeEEecCCCcEEEEEecCCCCCccCC
Confidence 12 233333333332211 111 22345677888888888777653 11
Q ss_pred -EEEEeCCCCCcceecc-------cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccC
Q 012994 185 -VDIWNHNRSQPINSFQ-------WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPM 256 (452)
Q Consensus 185 -i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (452)
+-+++.. +.+..+. .-.+.+-+|++++++..+.+++=..|.+.+||..++..+........ ..++..++
T Consensus 192 Lva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~-cGva~~~~ 268 (305)
T PF07433_consen 192 LVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDA-CGVAPTDD 268 (305)
T ss_pred eEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCce-eeeeecCC
Confidence 3444333 3232222 23578999999998855666777788999999998887665543322 12222222
Q ss_pred CCceEEeecCCCeEEEEe
Q 012994 257 EPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d 274 (452)
+ |++.+..|.+....
T Consensus 269 ~---f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 269 G---FLVSSGQGQLIRLS 283 (305)
T ss_pred c---eEEeCCCccEEEcc
Confidence 2 44555555544443
No 338
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=0.0019 Score=58.76 Aligned_cols=265 Identities=11% Similarity=0.133 Sum_probs=174.1
Q ss_pred EEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec-CCeee
Q 012994 91 IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-NSFWA 168 (452)
Q Consensus 91 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (452)
+.+++..+......+..+. ....+...+++..+.... ....+...+........ ..... .....
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~-------------~~~~g~~~p~~ 78 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQ-------------SLSVGGVYPAG 78 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeee-------------eccCCCccccc
Confidence 6777766666555554333 556677888775444433 22234444433111000 00001 22345
Q ss_pred eeecCCCC-eEEEe--CCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe--cCCeEEEEEccCCCCceEEE
Q 012994 169 VDHQWEGD-LFATA--GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 169 ~~~~~~~~-~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~ 243 (452)
++.++.+. .++.. .+.+.+.|..+........... ....+++.++++.+.++-. .++.+.+.|..+........
T Consensus 79 i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 79 VAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred eeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 66777777 44444 2579999988777766665533 6678999999966666665 47899999999888888865
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc-ee--eeCcccceEEEEEcCCCCEEEEEeCC---CeEEEEE
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-CV--HMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQ 317 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~--~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd 317 (452)
.......+++.|++..++++...++.+.++|........ .. ...-......+.++|+|.++...... +.+...|
T Consensus 158 vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 158 VGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred cCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 555568999999999999999999999999976543331 00 01222344678999999976655443 5899999
Q ss_pred CCCCceeee-eccCCcCcEEEEEEcCCCCEEEEeeC-CCcEEEeecccccccccCC
Q 012994 318 YNGGRSREI-YHTKRMQRVFCVKFSCDASYVISGSD-DTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 318 ~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~ 371 (452)
..++..... ...... ....+..+|+|.++.+... .+.+.+-|..+......+.
T Consensus 238 ~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 238 TATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 988877665 223322 4667899999999888744 4889999988877765543
No 339
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.36 E-value=5.6e-05 Score=68.76 Aligned_cols=187 Identities=15% Similarity=0.131 Sum_probs=111.5
Q ss_pred ccccEEEEEeCCCCcceEEEeeC--C-CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEE--eC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSM--D-GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLW--NV 138 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~--d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iw--d~ 138 (452)
-...+..-+|+|++..+.+..-. . ..+.++|+.+++....+. -.+.-..-+|+|||+.|+.+ ..||...|| |+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 34556667899998333333222 2 459999999886654443 23344556899999877654 456765555 55
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---C--eEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---A--QVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
....... .....+.-..-.|+|+|..++..+ | +|.+++.+...... +......-..-.|+|
T Consensus 270 ~~~~~~~-------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~Sp 335 (425)
T COG0823 270 DGKNLPR-------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSP 335 (425)
T ss_pred CCCccee-------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCC
Confidence 5443211 111122222557899999888775 2 48888888776533 222222222778999
Q ss_pred CCCcEEEEEecCCe--EEEEEccCCCCceEEEeecccceEEEccCCCceEEeecC
Q 012994 214 AEPNVLATTASDRS--ITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 214 ~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (452)
++..+++....+|. |.+.|+.++...+.+........-.|.+++..++...+.
T Consensus 336 dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 336 DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 99655555544555 666666666555555545555566677777665555443
No 340
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.35 E-value=0.00029 Score=69.19 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=141.6
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDI 187 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i 187 (452)
...|.++.|..++..++.+..+|.|.+-|..+.. ....-...++|.+++|+||+..++..++ ...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-------------~eivg~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-------------LEIVGNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-------------eeeeeeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 3689999999999999999999999999876652 2233345678999999999999888775 4444
Q ss_pred EeCCCCCcceeccc-----CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC-CceEEEeecccceEEEccCCCceE
Q 012994 188 WNHNRSQPINSFQW-----GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 188 ~d~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
+...+..++..-.. ..+....+-|.... ..+ -|+ .|.....+..... ..........-.+++|--+|.++.
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrke-Tqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKE-TQF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccc-eee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEE
Confidence 44333333322211 11222333333322 111 111 1222222211111 111112344556799999888765
Q ss_pred Eee---cCC-CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCceeee-e-ccCCc
Q 012994 262 TAA---NED-CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRTIRIFQYNGGRSREI-Y-HTKRM 332 (452)
Q Consensus 262 ~~~---~~~-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~dg~i~iwd~~~~~~~~~-~-~~~~~ 332 (452)
+.. ..+ ..+++||... ..........+.-.+++|-|.|..+++-. .|+.|.+|.-+.-..-.. + .....
T Consensus 212 Vs~~~~~~~~RkirV~drEg--~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDREG--ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEeccCCceeEEEecccc--hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 532 223 7899999772 12222222333445799999999998753 466799998654322111 1 11122
Q ss_pred CcEEEEEEcCCCCEEEE---eeCCCcEEEeecccc
Q 012994 333 QRVFCVKFSCDASYVIS---GSDDTNLRLWKAKAS 364 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s---~~~dg~i~iw~~~~~ 364 (452)
..+..++|+.++..|++ ......|++|.+.+.
T Consensus 290 ~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 290 KEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 34999999999999887 444555999988764
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=3.2e-05 Score=70.35 Aligned_cols=176 Identities=10% Similarity=0.095 Sum_probs=118.4
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC---CeEEEEEccCCCCceEEEeecccceEEEccCCCceE
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD---RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
+.+-|.+ +.....+......+..-.|+|++..+....-.. ..+.++|+.++................|+|++..++
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~ 253 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLA 253 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEE
Confidence 4455554 555555555566777888999886654443332 359999999999888888888888899999999999
Q ss_pred EeecCCCe--EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCceeeeeccCCcCcEE
Q 012994 262 TAANEDCN--CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-DRT--IRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 262 ~~~~~~~~--i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
++...++. |+++|+....... +....+.-+.-.|+|||++|+-.+. .|. |.+++.+.+.......... . -.
T Consensus 254 f~~~rdg~~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~-~~ 329 (425)
T COG0823 254 FSSSRDGSPDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-G-NS 329 (425)
T ss_pred EEECCCCCccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-C-Cc
Confidence 99888774 6677777655322 2222233336789999999876654 443 7777777766544333332 1 22
Q ss_pred EEEEcCCCCEEEEeeC-CCc--EEEeeccccc
Q 012994 337 CVKFSCDASYVISGSD-DTN--LRLWKAKASE 365 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~-dg~--i~iw~~~~~~ 365 (452)
.-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 7789999999887664 344 6666665554
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.31 E-value=0.00028 Score=62.72 Aligned_cols=220 Identities=14% Similarity=0.156 Sum_probs=127.4
Q ss_pred CcEEEEeCCCCceEEEeec-CCCCeeEEEE---ccC----CCeEEEEeC----------CCcEEEEeCCCCCCCCCCCCC
Q 012994 89 GDIRLWDIANRRTVCQYSG-HQGAVRGLTV---STD----GRILVSCGT----------DCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~---~~~----~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~ 150 (452)
+.|++.|..+.+.+..+.- ....+++++. ..+ ..+|+.|+. .|.|.++++.... ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~------~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP------EN 75 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc------cc
Confidence 4688999888877766532 2234554443 322 457777743 2889999997640 00
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC-cceeccc-CCCceEEEEECCCCCcEEEEEecCCeE
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ-PINSFQW-GTDTVISVRFNPAEPNVLATTASDRSI 228 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i 228 (452)
......+......+++.+++.- ++.++++.++.+.+|++...+ ....-.. ....+.++... + +++++|.....+
T Consensus 76 ~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv 151 (321)
T PF03178_consen 76 NFKLKLIHSTEVKGPVTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSV 151 (321)
T ss_dssp --EEEEEEEEEESS-EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSE
T ss_pred ceEEEEEEEEeecCcceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCE
Confidence 0012334455667888888777 556888888899999998887 3322221 22356666655 3 578888887888
Q ss_pred EEEEccCCCC-ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE
Q 012994 229 TLYDLRMSSP-ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 307 (452)
Q Consensus 229 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 307 (452)
.++..+.... +..+. .......++++.+-++++.++.+
T Consensus 152 ~~~~~~~~~~~l~~va-----------------------------------------~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 152 SLLRYDEENNKLILVA-----------------------------------------RDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEETTTE-EEEEE-----------------------------------------EESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEEEccCCEEEEEE-----------------------------------------ecCCCccEEEEEEecCCcEEEEE
Confidence 8775543111 11110 00223457888888666789999
Q ss_pred eCCCeEEEEECCC-------C--ceeeeeccCCcCcEEEE---EEcCC--CC------EEEEeeCCCcEEEe
Q 012994 308 SYDRTIRIFQYNG-------G--RSREIYHTKRMQRVFCV---KFSCD--AS------YVISGSDDTNLRLW 359 (452)
Q Consensus 308 ~~dg~i~iwd~~~-------~--~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~iw 359 (452)
+.+|.+.++.... + +.......+....|+++ ++.|. +. .++.++.+|.|.+.
T Consensus 191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999998763 1 22222222223567777 54551 22 47778889998844
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.30 E-value=0.0027 Score=58.88 Aligned_cols=243 Identities=13% Similarity=0.100 Sum_probs=125.3
Q ss_pred ccEEEEEeCCCCcceEEE-eeCCC----cEEEEeCCCCceEEEe-ecCCCCeeEEEEccCCCeEEEEeCCC---------
Q 012994 67 DGISCMAKNPNYLKGFFS-GSMDG----DIRLWDIANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDC--------- 131 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~t-g~~dg----~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~dg--------- 131 (452)
-.+..+.++|+| +++|. -+..| .++++|+.+++.+... ... .-..+.|.++++.|+....+.
T Consensus 124 ~~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 124 VSLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EEeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344567899999 66654 34444 4999999999776532 221 122399999988776665443
Q ss_pred --cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc--eecccCC-Cc-
Q 012994 132 --TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI--NSFQWGT-DT- 205 (452)
Q Consensus 132 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~~~~~~~-~~- 205 (452)
.|..|.+.+. ..- ..+.... ..
T Consensus 201 ~~~v~~~~~gt~----------------------------------------------------~~~d~lvfe~~~~~~~ 228 (414)
T PF02897_consen 201 PRQVYRHKLGTP----------------------------------------------------QSEDELVFEEPDEPFW 228 (414)
T ss_dssp CEEEEEEETTS-----------------------------------------------------GGG-EEEEC-TTCTTS
T ss_pred CcEEEEEECCCC----------------------------------------------------hHhCeeEEeecCCCcE
Confidence 1344444322 111 1122211 22
Q ss_pred eEEEEECCCCCcEEEEEecCC---eEEEEEccCC----CCceEEEeecccceEEEccCCCceEEee---cCCCeEEEEeC
Q 012994 206 VISVRFNPAEPNVLATTASDR---SITLYDLRMS----SPARKVIMRTKSNSISWNPMEPMNFTAA---NEDCNCYSYDS 275 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~ 275 (452)
...+..++++..+++...... .+.+.|+... .....+..............+..+++.. ...+.+...++
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l 308 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDL 308 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEET
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecc
Confidence 567788888854454444333 4677777664 2233333322222111212244444433 23567778888
Q ss_pred CCccc--cceeeeCccc--ceEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 276 RKLDE--AKCVHMGHES--AVMDIDYSPTGREFV-TGSYDR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 276 ~~~~~--~~~~~~~~~~--~v~~~~~s~~g~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
..... .......+.. .+..+.. .+.+|+ ....++ .|+++++..+...........+.|..+...+++..+.
T Consensus 309 ~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 309 ADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp TSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred cccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 77653 2223444544 3555544 444444 444444 4889999833333333333335677776666655433
Q ss_pred -Eee---CCCcEEEeecccccc
Q 012994 349 -SGS---DDTNLRLWKAKASEQ 366 (452)
Q Consensus 349 -s~~---~dg~i~iw~~~~~~~ 366 (452)
+.+ .-+++..||+.+++.
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCE
T ss_pred EEEeCCCCCCEEEEEECCCCCE
Confidence 222 246788889888765
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.30 E-value=9.1e-05 Score=71.47 Aligned_cols=194 Identities=10% Similarity=0.140 Sum_probs=121.8
Q ss_pred eeeeeecC-CCCeEEEeCCeEEEEeCCCCCcce------ec---ccCCCceEEEEECCCCCcEEEEE-ecCCeEEEEEcc
Q 012994 166 FWAVDHQW-EGDLFATAGAQVDIWNHNRSQPIN------SF---QWGTDTVISVRFNPAEPNVLATT-ASDRSITLYDLR 234 (452)
Q Consensus 166 ~~~~~~~~-~~~~~~~~~~~i~i~d~~~~~~~~------~~---~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~ 234 (452)
...++... ..+.+++.|..|-|+.......+. .+ .+..-....+..+..+.++|+.. .....|+-.|+.
T Consensus 433 n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe 512 (794)
T PF08553_consen 433 NSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLE 512 (794)
T ss_pred cceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEEecC
Confidence 33444443 345666666678888766322111 11 11111112222333343454443 356789999999
Q ss_pred CCCCceEEEeecccceEEEccCC------CceEEeecCCCeEEEEeCCCccccceeee----CcccceEEEEEcCCCCEE
Q 012994 235 MSSPARKVIMRTKSNSISWNPME------PMNFTAANEDCNCYSYDSRKLDEAKCVHM----GHESAVMDIDYSPTGREF 304 (452)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l 304 (452)
.++.+.............+.|+. +.....|-++..+..||.|-......... ......+|++-+.+| +|
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~i 591 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YI 591 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eE
Confidence 99999888877666555666642 33467788899999999996542211111 233457777777666 78
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 305 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
|+|+.+|.||+||-- |....+...+-..+|.+|..+.||++|++.+ +..|.++++.
T Consensus 592 avgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 592 AVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred EEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 999999999999953 4433444344458999999999999998666 4577787763
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.29 E-value=0.00051 Score=62.86 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=108.5
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE-eCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW-NVPVATL 143 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw-d~~~~~~ 143 (452)
..-....+.++|+| ++++. +.||...|+.....+.... +.-...+|.+.+ .+|+-...++|.++ ++....
T Consensus 31 ~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~- 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV- 101 (443)
T ss_dssp -SS--SEEEE-TTS-SEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred CCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence 34457899999998 77777 5578888888444443322 344668899854 57777778899996 442221
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
... ...+..+..+-. |.+++..+. .|.+||+.+++.+..+... .|..+.|++++ .+++..
T Consensus 102 ~k~-------------i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g-~~val~ 162 (443)
T PF04053_consen 102 VKS-------------IKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDG-ELVALV 162 (443)
T ss_dssp T------------------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTS-SEEEEE
T ss_pred ceE-------------EcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCC-CEEEEE
Confidence 001 111111112211 777776665 5999999999999998853 48999999988 566666
Q ss_pred ecCCeEEEEEccCC------------CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 223 ASDRSITLYDLRMS------------SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 223 ~~dg~i~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
+. ..+.+++.... ...........+.+..|..+ .++-.+.. .+..+-........ .-..
T Consensus 163 t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d---~fiYtT~~-~lkYl~~Ge~~~i~----~ld~ 233 (443)
T PF04053_consen 163 TK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED---CFIYTTSN-HLKYLVNGETGIIA----HLDK 233 (443)
T ss_dssp -S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT---EEEEE-TT-EEEEEETTEEEEEE----E-SS
T ss_pred eC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC---EEEEEcCC-eEEEEEcCCcceEE----EcCC
Confidence 54 46777765433 11122222567778888765 33333333 33332211111110 1123
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
++.=+.+.|..+.+.....|+.|..+.+.
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 44555666655667777777777777665
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.29 E-value=0.0016 Score=56.62 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=129.5
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
+.|+.|+.+| +.+++.........+. +...|..+...++-+.|++-+ |+.+.++++..-........... +
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~---~--- 78 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF---P--- 78 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc---c---
Confidence 7899999888 8999983332222222 233499999999877777665 59999999976543221100000 0
Q ss_pred EEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC-cceecccCCCceEEEE--ECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 160 YVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ-PINSFQWGTDTVISVR--FNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
... ....+. ....+...+ -...+ ...++......|.+|.....
T Consensus 79 --------------------------------~~~~~~~~~~-~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 79 --------------------------------KSRSLPTKLP-ETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred --------------------------------cccccccccc-ccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECC
Confidence 000 000000 111222222 11223 23334444568888887653
Q ss_pred -----CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-----------cccceEEEEEcCC
Q 012994 237 -----SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-----------HESAVMDIDYSPT 300 (452)
Q Consensus 237 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------~~~~v~~~~~s~~ 300 (452)
.....+.....+..+.|. ...++.+. .....++|+.+.......... ...++..+... +
T Consensus 125 ~~~f~~~~ke~~lp~~~~~i~~~---~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 199 (275)
T PF00780_consen 125 RNSFSKLLKEISLPDPPSSIAFL---GNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-D 199 (275)
T ss_pred cccccceeEEEEcCCCcEEEEEe---CCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-C
Confidence 455677778888899988 23355554 334666676643322111111 11233334443 4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcee-eeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChh
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSR-EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 373 (452)
+.+|++. |..-.+.|....... ..+.-. ..+.++++. ..||+..+.+ .|.||++.++++++.+..+
T Consensus 200 ~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~--~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 200 NEFLLCY--DNIGVFVNKNGEPSRKSTIQWS--SAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIPLP 266 (275)
T ss_pred ceEEEEe--cceEEEEcCCCCcCcccEEEcC--CchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEECC
Confidence 5666643 334444555432222 122222 345666663 4578776665 5999999999998887643
No 347
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=0.001 Score=57.68 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=131.8
Q ss_pred EEccCCCeE-EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC
Q 012994 116 TVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ 194 (452)
Q Consensus 116 ~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 194 (452)
.|.++...| .+--..+.|.-|+..++ ....+.....+.+...-..+..+++....+.+++..++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g--------------~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~ 96 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG--------------KKRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGG 96 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC--------------ceEEEECCCCcccceeecCCCeEEEEccccEEEeccCCc
Confidence 466665533 33344667777777543 223333444445555555566666666667777766555
Q ss_pred cceeccc-----CCCceEEEEECCCCCcEEEEEec-----------CCeEEEEEccCCCCceEEEe-ecccceEEEccCC
Q 012994 195 PINSFQW-----GTDTVISVRFNPAEPNVLATTAS-----------DRSITLYDLRMSSPARKVIM-RTKSNSISWNPME 257 (452)
Q Consensus 195 ~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~ 257 (452)
.+..+.. .....+.+.+.|+| .+.++... -|.|+.+|. .+.....+.. -...+.++|+|++
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg 174 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG 174 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC
Confidence 4222211 12456678888887 44443333 133444443 3333333333 4456899999999
Q ss_pred CceEEeecCCCeEEEEeCCC--c---cc-cceeeeCcccceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeeeccC
Q 012994 258 PMNFTAANEDCNCYSYDSRK--L---DE-AKCVHMGHESAVMDIDYSPTGREFVTGSYDR-TIRIFQYNGGRSREIYHTK 330 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~--~---~~-~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~ 330 (452)
..++++-+..+.++.|+... . .. .........+..-.++...+|++-+++..+| .|.+|+.. ++.+..+...
T Consensus 175 ~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 175 KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 99999999999999988762 1 11 1122223345566778888888876555554 89999998 8888777666
Q ss_pred CcCcEEEEEEc-CCCCEEEEee
Q 012994 331 RMQRVFCVKFS-CDASYVISGS 351 (452)
Q Consensus 331 ~~~~v~~~~~s-~~~~~l~s~~ 351 (452)
. ..+++++|- |+.+.|+..+
T Consensus 254 ~-~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 254 V-KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred C-CCCccceEeCCCcCEEEEEe
Confidence 5 568888884 4455554433
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.0033 Score=57.16 Aligned_cols=261 Identities=17% Similarity=0.171 Sum_probs=166.3
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCe-EEEEeCCCcEEEEeCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI-LVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~-l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
....+...+++....++-.....+...+............-...-..++.++.+.. .++...++.|.+.|..+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--- 108 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--- 108 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce---
Confidence 45567777877333333333335555554421111111111133456788887774 44455568999999655432
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEE
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 221 (452)
............+++++++..+...+ +.+.+.|..+++.+........+ ..+++.|++...+++
T Consensus 109 ----------~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~ 177 (381)
T COG3391 109 ----------LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVT 177 (381)
T ss_pred ----------eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEE
Confidence 22222233556788899886655543 35888888888888775554444 899999999666767
Q ss_pred EecCCeEEEEEccCCCCce-----EEEeecccceEEEccCCCceEEeecCC--CeEEEEeCCCccccceeee-CcccceE
Q 012994 222 TASDRSITLYDLRMSSPAR-----KVIMRTKSNSISWNPMEPMNFTAANED--CNCYSYDSRKLDEAKCVHM-GHESAVM 293 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~v~ 293 (452)
-..++.|.+.|........ ..........+.+.|++...+++...+ +.+...|............ +.. ...
T Consensus 178 ~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~ 256 (381)
T COG3391 178 NSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APR 256 (381)
T ss_pred ecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCC
Confidence 7789999999976665543 234455667899999999888877666 6888888877554433221 222 456
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeccCC--cCcEEEEEEcCC
Q 012994 294 DIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKR--MQRVFCVKFSCD 343 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~s~~ 343 (452)
.+..+|+|..+.+... .+.+.+-|..+........... ...+..+++.+.
T Consensus 257 ~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 257 GVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred ceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 6899999999887744 4889999998877666543332 123555666553
No 349
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.24 E-value=0.00017 Score=61.21 Aligned_cols=179 Identities=9% Similarity=0.092 Sum_probs=111.3
Q ss_pred CeEEEEeCCCCCcceecccCC--CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCce
Q 012994 183 AQVDIWNHNRSQPINSFQWGT--DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMN 260 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (452)
+.|..||..+++.+....... ....+..+. .+ ..+++++.++.|..||..+++............... ...+..
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~- 78 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVP-DG-GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGR- 78 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEE-ET-TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTE-
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEE-eC-CEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccc-
Confidence 568888988888887765421 222211222 23 456677899999999999999888888755543332 222333
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcc---cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC----
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHE---SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ---- 333 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 333 (452)
++++..++.++.+|..+............ ..........++..++.+..++.|..+|..+|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 44444677999999888776655322111 11122222334778888888999999999999997776543211
Q ss_pred -----cEEEEEEcCCCCEEEEeeCCCc-EEEeeccccccc
Q 012994 334 -----RVFCVKFSCDASYVISGSDDTN-LRLWKAKASEQL 367 (452)
Q Consensus 334 -----~v~~~~~s~~~~~l~s~~~dg~-i~iw~~~~~~~~ 367 (452)
.+..-....++ .++.++.+|. +.+ |+.+++.+
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~ 196 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKL 196 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEE
Confidence 11222222344 6777777775 555 99998854
No 350
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.22 E-value=0.0027 Score=60.16 Aligned_cols=279 Identities=10% Similarity=0.055 Sum_probs=154.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCC-CCeeE----------EEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRG----------LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~----------l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
..++.++.++.|.-.|..+|+.+..+.... ..+.. +++ .+..++.++.|+.+.-.|..+++......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 567778888999999999999887765311 11111 122 23467778889999999999998765543
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCCC-----------------
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTD----------------- 204 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~----------------- 204 (452)
...... . ..+.+.-.-.++.+++.. .+.|..+|.++++.+-.+..-..
T Consensus 148 ~~~~~~-~-------~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~ 219 (527)
T TIGR03075 148 NGDYKA-G-------YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPG 219 (527)
T ss_pred cccccc-c-------ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccc
Confidence 321100 0 000000000133333332 24677888888776654432111
Q ss_pred --------------ceE-EEEECCCCCcEEEEEecC-----C-----------eEEEEEccCCCCceEEEeec-------
Q 012994 205 --------------TVI-SVRFNPAEPNVLATTASD-----R-----------SITLYDLRMSSPARKVIMRT------- 246 (452)
Q Consensus 205 --------------~i~-~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~~~~~~~------- 246 (452)
.+. .+++.|.. .+++.+..+ + .|.-.|+++++....++...
T Consensus 220 ~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d 298 (527)
T TIGR03075 220 AKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYD 298 (527)
T ss_pred cCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCcccc
Confidence 011 22444443 344444311 2 56677788887776655311
Q ss_pred ---ccceEEEccCCC--ceEEeecCCCeEEEEeCCCccccce-------eee---C-cc------------------cc-
Q 012994 247 ---KSNSISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKC-------VHM---G-HE------------------SA- 291 (452)
Q Consensus 247 ---~~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~-------~~~---~-~~------------------~~- 291 (452)
...-+....++. .+++.+..+|.++++|..+.+.+.. ... . .. ..
T Consensus 299 ~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~ 378 (527)
T TIGR03075 299 GVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVG 378 (527)
T ss_pred CCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeE
Confidence 112222223444 4678899999999999887654210 000 0 00 00
Q ss_pred ----------eEEEEEcCCCCEEEEEeCC---------------------------------CeEEEEECCCCceeeeec
Q 012994 292 ----------VMDIDYSPTGREFVTGSYD---------------------------------RTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 292 ----------v~~~~~s~~g~~l~s~~~d---------------------------------g~i~iwd~~~~~~~~~~~ 328 (452)
-..++++|+..+++....+ |.|.-+|+.+++......
T Consensus 379 ~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~ 458 (527)
T TIGR03075 379 VCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHK 458 (527)
T ss_pred ECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEec
Confidence 0125566655555433222 457778888888776654
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.... ...+. ..-.+.+++.++.||.++.+|.++|+.+-.++
T Consensus 459 ~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 459 EDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred CCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 3321 11111 11245577788889999999999999986654
No 351
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.21 E-value=0.00044 Score=57.77 Aligned_cols=193 Identities=14% Similarity=0.187 Sum_probs=108.9
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
.+.+-.+.+..++|+|+...++++....+.|...+. +|+.+..+.-. .+-.-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 455666679999999986467778888889988886 57887776533 3567889998888777766668999999985
Q ss_pred CCCCCCCCCCCCCCCCCeeE---EEecCCeeeeeecCCCCeEEEeC-C-eEEEEeCCC---CCcce--------ecccCC
Q 012994 140 VATLTDSDDSTDNSSEPLAV---YVWKNSFWAVDHQWEGDLFATAG-A-QVDIWNHNR---SQPIN--------SFQWGT 203 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~-~i~i~d~~~---~~~~~--------~~~~~~ 203 (452)
.......... ...... ...+..+-.++|.+.+..+..+- . -..+|.+.. ...+. ......
T Consensus 95 ~~~~~~~~~~----~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 95 DDTTSLDRAD----VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ---TT--EEE----EEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred ccccccchhh----ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 4321100000 000000 11335688999999766555543 2 245555443 11111 111234
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec----------ccceEEEccCCCc
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT----------KSNSISWNPMEPM 259 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 259 (452)
..+.+++++|..+++++....+..|..+| ..++....+.+.. +...+++.++|..
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 56889999999888999999999999999 6677666666544 4567888887643
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.20 E-value=0.00016 Score=65.22 Aligned_cols=240 Identities=10% Similarity=0.103 Sum_probs=125.8
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeC
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (452)
.|+++.|.++..-|+.+...|.|.||.....+......... .... ....+.. .++.-.+.|+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~--~~~~-------~~~~~~~---------~~~~~~l~di 64 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP--DLDY-------NFRRFSL---------NNSPGKLTDI 64 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------------S--G---------GGSS-SEEE-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc--ccCc-------ccccccc---------cCCCcceEEe
Confidence 58999999998899999999999999886543321000000 0000 0000000 0001111222
Q ss_pred CC---------CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec---------ccceEE
Q 012994 191 NR---------SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT---------KSNSIS 252 (452)
Q Consensus 191 ~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~ 252 (452)
.. -.+...+....++|++++.+.-| ++++|..+|.+.|.|+|....+....... .+.++.
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIE 142 (395)
T ss_dssp GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEE
T ss_pred hhhCCcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEE
Confidence 11 11333444457899999998655 89999999999999999888777654433 233455
Q ss_pred Ecc----C---CCceEEeecCCCeEEEEeCCC-c-cccc----eeeeCcccceEEEE-EcCC-C----------------
Q 012994 253 WNP----M---EPMNFTAANEDCNCYSYDSRK-L-DEAK----CVHMGHESAVMDID-YSPT-G---------------- 301 (452)
Q Consensus 253 ~~~----~---~~~~~~~~~~~~~i~~~d~~~-~-~~~~----~~~~~~~~~v~~~~-~s~~-g---------------- 301 (452)
|.. + ....+++|++.|.+..|.+.. . .... .....+.++|..+. ++.+ |
T Consensus 143 F~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred EEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 542 1 224678889999999997642 1 1111 11113445555554 3222 1
Q ss_pred ----CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEc-----CCCCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 302 ----REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS-----CDASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 302 ----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
.+++++ .+..++++...+.+......... .....+.+- ..+..|++-..+|.|+++.+..-+.+..+..
T Consensus 223 ~~i~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~-~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 223 ISIPGYVVVV-SESDIRVFKPPKSKGAHKSFDDP-FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp ----EEEEEE--SSEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CCcCcEEEEE-cccceEEEeCCCCcccceeeccc-cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 134444 46779999998877655443221 223344452 3566788889999999999999888766544
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.19 E-value=0.0033 Score=54.29 Aligned_cols=243 Identities=10% Similarity=0.111 Sum_probs=136.6
Q ss_pred EEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecC---CC----CeeEEEEccCCCeEEEEe--CCC
Q 012994 71 CMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH---QG----AVRGLTVSTDGRILVSCG--TDC 131 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h---~~----~v~~l~~~~~~~~l~s~~--~dg 131 (452)
.+..+|++ +.+++++ ..-.|.+||..+......+.-. .. ....++++.|+++++... --.
T Consensus 40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 35678998 7777643 3446999999998777654322 11 224467888888877653 345
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCC-CCCccee----cccCCCce
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHN-RSQPINS----FQWGTDTV 206 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~-~~~~~~~----~~~~~~~i 206 (452)
+|.|-|+...+.. .....++.....-..+++-..+|++|.+.-..+. .|+.... |....+++
T Consensus 119 SVtVVDl~~~kvv-------------~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 119 SVTVVDLAAKKVV-------------GEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPL 185 (342)
T ss_dssp EEEEEETTTTEEE-------------EEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B
T ss_pred eEEEEECCCCcee-------------eeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccc
Confidence 7888888766432 2222233333333334555556667777777766 3443321 11112222
Q ss_pred E-EEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------------ecccceEEEccCCCceEEeecC------
Q 012994 207 I-SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------------RTKSNSISWNPMEPMNFTAANE------ 266 (452)
Q Consensus 207 ~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~------ 266 (452)
. .-++...+ ..++--+.+|.|+-.|+........... ++.-..+++++..+.+++....
T Consensus 186 f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 186 FEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred ccccceECCC-CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 1 22333333 3344467789999888876653322211 1122346666665555544321
Q ss_pred ---CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC-EEEEE-eCCCeEEEEECCCCceeeeeccC
Q 012994 267 ---DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTG-SYDRTIRIFQYNGGRSREIYHTK 330 (452)
Q Consensus 267 ---~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 330 (452)
...|+.+|+.+.+....+... .++.+|..+.+.+ +|++. ..++.+.+||..+|+.+.....-
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred cCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 125788888887776666543 3577899998765 55544 45899999999999988776443
No 354
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.16 E-value=1.6e-06 Score=78.52 Aligned_cols=201 Identities=17% Similarity=0.208 Sum_probs=126.8
Q ss_pred CCCeeEEEEccCC--CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEE
Q 012994 109 QGAVRGLTVSTDG--RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (452)
...+.|+++.-+. ..++.|..+|.|.+-.+......
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------------------------------------------ 93 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------------------------------------------ 93 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc------------------------------------------
Confidence 3456777766533 46778888898888776543110
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe----cCCeEEEEEccCC--CCceEEE----eecccceEEEccC
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA----SDRSITLYDLRMS--SPARKVI----MRTKSNSISWNPM 256 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~--~~~~~~~----~~~~~~~~~~~~~ 256 (452)
.-.....+....++++|++-+.+.||+|- .|..+.|||+.+. .+..... ......+++|. .
T Consensus 94 --------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-r 164 (783)
T KOG1008|consen 94 --------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-R 164 (783)
T ss_pred --------cceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-c
Confidence 01223345678899999998777887774 3677999999876 2222222 22344577888 4
Q ss_pred CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEEC-CCCc-eeeeecc---C
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQY-NGGR-SREIYHT---K 330 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~---~ 330 (452)
...++.+|.....+.++|++........ -.+..+..+..+| .++|+++-. ||.|.+||. ..-+ ++..... .
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~ 241 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENK 241 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCC
Confidence 5556788888889999999843222111 2234567788888 778888776 999999994 3222 2222111 1
Q ss_pred CcCcEEEEEEcCCCC-EEEEee-CCCcEEEeeccc
Q 012994 331 RMQRVFCVKFSCDAS-YVISGS-DDTNLRLWKAKA 363 (452)
Q Consensus 331 ~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~ 363 (452)
....+..++|+|-.. .+++.. +.++|+.+++..
T Consensus 242 ~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 242 KPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 113489999999432 344444 457899998753
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.12 E-value=0.0028 Score=51.61 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=81.8
Q ss_pred CCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCC
Q 012994 75 NPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS 154 (452)
Q Consensus 75 ~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 154 (452)
.++...+++.|+..+.+.--|..+|+.+..-. -...|.+-+.- -|++++.|...|.+.+.+..++..
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~----------- 85 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ----------- 85 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhh-----------
Confidence 34445788999999999999999998766532 22333332222 366799999999999988877632
Q ss_pred CCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceE-EEEECCCCCcEEEEEecCCeEEEEEc
Q 012994 155 EPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVI-SVRFNPAEPNVLATTASDRSITLYDL 233 (452)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~dg~i~i~d~ 233 (452)
+|+.... +.|. .....+++ .++.+|+.|++.+..|.
T Consensus 86 --------------------------------~w~f~~~----------~~vk~~a~~d~~~-glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 86 --------------------------------IWNFVIL----------ETVKVRAQCDFDG-GLIYCGSHDGNFYALDP 122 (354)
T ss_pred --------------------------------eeeeeeh----------hhhccceEEcCCC-ceEEEecCCCcEEEecc
Confidence 1111111 1111 12334555 68999999999999999
Q ss_pred cCCCCceEEEeeccc-ceEEEcc
Q 012994 234 RMSSPARKVIMRTKS-NSISWNP 255 (452)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~ 255 (452)
++...+.+....+.. .+-+..|
T Consensus 123 ~~~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 123 KTYGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cccceEEecccCCceeccceecC
Confidence 999988886655443 2333444
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.05 E-value=0.0012 Score=59.53 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=125.1
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-ec-------C---------CCCeeEEEEccCCCeEEEEe
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SG-------H---------QGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~-------h---------~~~v~~l~~~~~~~~l~s~~ 128 (452)
...+....|+|+| +.++-.. ++.|.+++..++...+.- .+ - -+.-..+-||||+++||...
T Consensus 42 ~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 6678899999998 7777665 678999998777443321 11 0 11235688999999998775
Q ss_pred CC-CcEEEEeCC---CCCC----CCCC--CCCCCC-------------CC--CeeEE----EecCCeeeeeecCCCC-eE
Q 012994 129 TD-CTVKLWNVP---VATL----TDSD--DSTDNS-------------SE--PLAVY----VWKNSFWAVDHQWEGD-LF 178 (452)
Q Consensus 129 ~d-g~v~iwd~~---~~~~----~~~~--~~~~~~-------------~~--~~~~~----~~~~~~~~~~~~~~~~-~~ 178 (452)
.| ..|..+.+. .... .... ...... .. .+... ....-+..+.|.+++. ++
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 334443331 1100 0000 000000 00 00000 1123456678888888 43
Q ss_pred EEeC----C--eEEEEeCCCCCcceeccc-CCC---ceEEEEEC-CCCCcEEEEEecCCeEEEEEccCCCCceEEEe--e
Q 012994 179 ATAG----A--QVDIWNHNRSQPINSFQW-GTD---TVISVRFN-PAEPNVLATTASDRSITLYDLRMSSPARKVIM--R 245 (452)
Q Consensus 179 ~~~~----~--~i~i~d~~~~~~~~~~~~-~~~---~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~ 245 (452)
+... . .+.++|..++........ ... .-....+. +++..++.....||.-.||-+........... .
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~ 279 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD 279 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence 3332 1 377778877654333221 111 22345554 77767777777888766665544333222222 2
Q ss_pred ccc-ceEEEccCCCceEEeecCC----CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe
Q 012994 246 TKS-NSISWNPMEPMNFTAANED----CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 246 ~~~-~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~ 308 (452)
..+ ..+.+.+.+..++.++..+ ..++..++.......+ +......-..+.|||+|++++...
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~-LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC-LTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE-SSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe-ccCCCCCceEEEECCCCCEEEEEE
Confidence 223 3467888888888777763 3667777761122222 211112225899999999877543
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.05 E-value=0.00069 Score=47.76 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=51.8
Q ss_pred EEEEEe---CCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 69 ISCMAK---NPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 69 V~~~~~---~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
|++|++ ..+|.+.|++|+.|..|++|+ ..+.+..+.. .+.|++++-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 555554 456668999999999999998 4467777764 567888887766 56888999999999985
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.00 E-value=0.0093 Score=52.60 Aligned_cols=241 Identities=12% Similarity=0.078 Sum_probs=114.1
Q ss_pred eCCCCceEEEeecCCCCeeE-----EEEccCCCeEEEEe-CCCc--EEEEeCCCCCCCCCCCCCCCCCCCeeEEEec-CC
Q 012994 95 DIANRRTVCQYSGHQGAVRG-----LTVSTDGRILVSCG-TDCT--VKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-NS 165 (452)
Q Consensus 95 d~~~~~~~~~~~~h~~~v~~-----l~~~~~~~~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (452)
|..+|..+..+......-.. =+|.+||+.|+.++ .||. +.+.|+.+++..+. .... ..
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-------------Tdg~g~~ 82 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-------------TDGPGDN 82 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----------------SS-B-
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-------------ccCCCCC
Confidence 56677777766544332332 35677887665554 4554 55557766643222 1111 11
Q ss_pred eeeeeecCCCCeEE-Ee-CCeEEEEeCCCCCcceecccCCCceEEEEECCC-CCcEEEEEec------------------
Q 012994 166 FWAVDHQWEGDLFA-TA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA-EPNVLATTAS------------------ 224 (452)
Q Consensus 166 ~~~~~~~~~~~~~~-~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~------------------ 224 (452)
.....++++...++ .. +..+.-.|+.+.+....+......+-...|..+ +...+ +|..
T Consensus 83 ~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHH
T ss_pred ccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHH
Confidence 22344556666654 33 357999999998866666655665554555422 22333 2221
Q ss_pred -----CCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecC------CCeEEEEeCCCccccceeeeCcccceE
Q 012994 225 -----DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANE------DCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 225 -----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
...|.-.|+.+++....+....-..-+.++|..+.+++-+-+ +..|++.+.................+.
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred HhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 124555566666655555555566788899998888777654 335555554433222211112233455
Q ss_pred EEEEcCCCCEEEEE-----eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC
Q 012994 294 DIDYSPTGREFVTG-----SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 294 ~~~~s~~g~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
.=-|+|||..|.-- +.+..|.-+|..++........ .+...+.-++||++++-=+.
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~---p~~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEM---PWCSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeC---CceeeeEEcCCCCEEEecCC
Confidence 56789999876542 2345677888888766543333 23556677889998775333
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.96 E-value=0.017 Score=54.93 Aligned_cols=159 Identities=12% Similarity=0.074 Sum_probs=90.6
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEcc---CCCeEEEEe------CCCcEEEEeCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-VRGLTVST---DGRILVSCG------TDCTVKLWNVPVATLTDSDDS 149 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~---~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~ 149 (452)
..++.++.|+.+.-.|..+|+.+......... -..+.-+| ++ .++.+. .+|.|..+|..+++.+-....
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 45777888999999999999988765421100 01111122 34 455543 268999999999987755443
Q ss_pred CCCCCC------------C-------eeEEEecCCee-eeeecCCCCeEEEeC------------------CeEEEEeCC
Q 012994 150 TDNSSE------------P-------LAVYVWKNSFW-AVDHQWEGDLFATAG------------------AQVDIWNHN 191 (452)
Q Consensus 150 ~~~~~~------------~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~~i~i~d~~ 191 (452)
...... + .........++ .+.+.+...++..+. ..|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 322100 0 00000111222 335555444443332 137777888
Q ss_pred CCCcceecccCCCce---------EEEEECCCCC--cEEEEEecCCeEEEEEccCCCCc
Q 012994 192 RSQPINSFQWGTDTV---------ISVRFNPAEP--NVLATTASDRSITLYDLRMSSPA 239 (452)
Q Consensus 192 ~~~~~~~~~~~~~~i---------~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~ 239 (452)
+++..-.++.....+ .-+.+..++. ..++.+..+|.+.+.|-++++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 998877776522211 1222223443 47889999999999999888764
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.01 Score=54.46 Aligned_cols=188 Identities=9% Similarity=0.094 Sum_probs=91.1
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-------ecCCCCeeEEEEccCCCeEEEEe
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~ 128 (452)
+.++.++.=-.+.|.++.|+.+ ..|+.-..||.++++|+. |+....+ .-....+.+..+..+|-.+++
T Consensus 70 G~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt-- 144 (410)
T PF04841_consen 70 GKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT-- 144 (410)
T ss_pred CCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--
Confidence 3344443222378999999886 456677789999999986 3331111 111222333344445533333
Q ss_pred CCCcEEEEeCCCCC-CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC--eEEEeCCeEEEEeCCCCCcceecccCCCc
Q 012994 129 TDCTVKLWNVPVAT-LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD--LFATAGAQVDIWNHNRSQPINSFQWGTDT 205 (452)
Q Consensus 129 ~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 205 (452)
.++.+.+.+-.... ........ +........+........++.+.. +++..++.+.+.+-...+. +. ..++
T Consensus 145 ~~~~~~~v~n~~~~~~~~~~~~~--p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~ 218 (410)
T PF04841_consen 145 GNNRFYVVNNIDEPVKLRRLPEI--PGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGP 218 (410)
T ss_pred CCCeEEEEeCccccchhhccccC--CCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCC
Confidence 34444433221111 10000000 000000000111000011222222 3333344555444333222 21 2468
Q ss_pred eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEcc
Q 012994 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNP 255 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~ 255 (452)
+..+++||++ +++|.-..+|.+.+.+..-.+....+... ..+..+.|.-
T Consensus 219 i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 219 IIKIAVSPNG-KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred eEEEEECCCC-CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 9999999998 68888888899988876666555555443 3344555543
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0046 Score=55.92 Aligned_cols=246 Identities=11% Similarity=0.090 Sum_probs=123.0
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-------------------------------------------EEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-------------------------------------------VCQ 104 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------------------------------------------~~~ 104 (452)
.|+.+.|.++. .-|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999997 8899999999999986542111 111
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
+....++|++++.|.- -++|.|..+|.+.|.|++....+.. ...
T Consensus 82 ~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~-------------~~i---------------------- 125 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYN-------------ENI---------------------- 125 (395)
T ss_dssp E---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEE-------------EEG----------------------
T ss_pred eeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEee-------------ccc----------------------
Confidence 2234678888888744 4788888888888888854322110 000
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECC----CC---CcEEEEEecCCeEEEEEccC-CCCceEEE-------eecccc
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNP----AE---PNVLATTASDRSITLYDLRM-SSPARKVI-------MRTKSN 249 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~----~~---~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-------~~~~~~ 249 (452)
.. ...-......++++.|.- ++ .-.+++|...|.+.+|.+.- ........ ....+.
T Consensus 126 ------~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~ 196 (395)
T PF08596_consen 126 ------RE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPIL 196 (395)
T ss_dssp ------GG-----T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----
T ss_pred ------cc---cccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceE
Confidence 00 000011234455565541 11 13577888889999997742 11111111 111222
Q ss_pred eEE-EccC-------------------CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE-----cCCCCEE
Q 012994 250 SIS-WNPM-------------------EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY-----SPTGREF 304 (452)
Q Consensus 250 ~~~-~~~~-------------------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~-----s~~g~~l 304 (452)
.+. ++.+ .-.-+++...+..++++...+.+.....+ ...-....+++ ...+..|
T Consensus 197 ~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~L 275 (395)
T PF08596_consen 197 SIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCL 275 (395)
T ss_dssp EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEE
T ss_pred EEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEE
Confidence 222 2111 00124455557778888877655544444 22122333444 2356678
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccCC---cCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 305 VTGSYDRTIRIFQYNGGRSREIYHTKR---MQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
++-..+|.|++|.+..-+.+....... ...+...+++++|..++-.+.. .+.++.+
T Consensus 276 v~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 276 VCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp EEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS-EEEEEEE
T ss_pred EEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc-cEEEEEE
Confidence 888899999999999877765553321 1234567788999977665543 4444443
No 362
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.91 E-value=4.4e-05 Score=43.11 Aligned_cols=39 Identities=36% Similarity=0.663 Sum_probs=34.5
Q ss_pred CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEe
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWN 137 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd 137 (452)
++....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999989999999999999996
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.90 E-value=0.0024 Score=56.80 Aligned_cols=174 Identities=13% Similarity=0.197 Sum_probs=102.7
Q ss_pred eEEEEeCCCCCcceecccC-CCceEEE---EECCC---CCcEEEEEec----------CCeEEEEEccCC-----C--Cc
Q 012994 184 QVDIWNHNRSQPINSFQWG-TDTVISV---RFNPA---EPNVLATTAS----------DRSITLYDLRMS-----S--PA 239 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~-~~~i~~~---~~~~~---~~~~l~~~~~----------dg~i~i~d~~~~-----~--~~ 239 (452)
.|++.|..+.+.+..+... ...+.++ .+..+ ...++++|.. .|.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4677787777766655442 2334443 33332 1467777653 289999999884 1 12
Q ss_pred eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 240 RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
......+.+.+++-. ++.++++. +..+++|++.... -...........++++.. .+++++.|+....+.++.+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEE
Confidence 223345555555544 44444444 3677777776655 111111122234555554 4669999998888888755
Q ss_pred CC--CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 319 NG--GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 319 ~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+. .+............++++.|-+++..++.+..+|.+.++....
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 43 2233333333346789999987767899999999999998863
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0001 Score=67.98 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=84.8
Q ss_pred CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-----eeccCCc
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE-----IYHTKRM 332 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~ 332 (452)
...++.|++.|.+++|+............+..+.+..+++|++..++|.|+..|.|.++-++.+.... .....|.
T Consensus 45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCC
Confidence 34588899999999999887665555555556677788899999999999999999999887643322 1233345
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
..|++++|++|+..+++|...|.|..-.+.+
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEEEEecccccEEeecCCCceEEEEEech
Confidence 7899999999999999999999999988877
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=3.5e-05 Score=61.19 Aligned_cols=146 Identities=11% Similarity=0.065 Sum_probs=83.8
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE-EE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD-ID 296 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~-~~ 296 (452)
.+..-+.||.|.-++++..+....-. ..+....-.+....-+++|+.+|.+++|..............-...|.+ +.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse--~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSE--RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhh--hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 44556678888888776543221110 0011112223344458899999999999887443322222222223322 22
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe--eCCCcEEEeeccccc
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG--SDDTNLRLWKAKASE 365 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~ 365 (452)
--.++.+..+++.||.|+.|++..++.+.....+...++..+..+..+++|..+ |.|..++.|++..-.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 233566889999999999999998777655533332445555555555556555 566666666665433
No 366
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=2.5e-05 Score=44.14 Aligned_cols=38 Identities=37% Similarity=0.641 Sum_probs=33.7
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEe
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWD 95 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd 95 (452)
.....+.+|...|.++.|++.+ .++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 3456677899999999999998 8999999999999996
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.85 E-value=0.0027 Score=60.64 Aligned_cols=178 Identities=13% Similarity=0.096 Sum_probs=100.9
Q ss_pred eEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe-----cCC--eEEEEEccCCCCceEEEeecccc
Q 012994 177 LFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA-----SDR--SITLYDLRMSSPARKVIMRTKSN 249 (452)
Q Consensus 177 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~ 249 (452)
.++..+|.+.-.+-..-.++....+....+.+.+++|++....++.. .|. .|.+++. +.....+.......
T Consensus 323 ~~~v~~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~~~t 400 (591)
T PRK13616 323 LHALVDGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGHSLT 400 (591)
T ss_pred ceEEECCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCCCCC
Confidence 33444666655543333333333333346788999999965555442 244 4444454 33334443344567
Q ss_pred eEEEccCCCceEEeecC-----------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEE---
Q 012994 250 SISWNPMEPMNFTAANE-----------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI--- 315 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~i--- 315 (452)
.-.|+|++..+.++... .+.+++.+........ .....|..+.|||||..++... +|.|++
T Consensus 401 ~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 401 RPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence 88999997765555322 2344444443322211 2245799999999999888766 577877
Q ss_pred EECCCCceee----eeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 316 FQYNGGRSRE----IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 316 wd~~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
-....|.... .+...-...+.++.|..++.++ .+..++.-.+|.+.
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 4544554111 0112222346889999999855 55555656667654
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.83 E-value=0.037 Score=54.01 Aligned_cols=293 Identities=12% Similarity=0.082 Sum_probs=144.7
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEccC--C----CeEEEEeCCCcEEEEeCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTD--G----RILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~--~----~~l~s~~~dg~v~iwd~~ 139 (452)
.+++...+-+. ..++.++.++.+...++..+. +.... .-...|.|+.++|- + +.++.|.++..+.+.-..
T Consensus 489 ~~ti~~~~~n~-sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~ 566 (1096)
T KOG1897|consen 489 KITIGVVSANA-SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFL 566 (1096)
T ss_pred ceEEEEEeecc-eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEEC
Confidence 34444444443 456666666667666665554 22222 23468999999973 2 278888877666554332
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeE--EEEeCCCCCcceec--ccCCCceEEEEECC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV--DIWNHNRSQPINSF--QWGTDTVISVRFNP 213 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i--~i~d~~~~~~~~~~--~~~~~~i~~~~~~~ 213 (452)
........ ........+..+....+-.+..++.++- |.+ .++|..++..-..- .....++.--.|+.
T Consensus 567 pd~~~~~~-------~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s 639 (1096)
T KOG1897|consen 567 PDLILITH-------EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSS 639 (1096)
T ss_pred CCcceeee-------eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEee
Confidence 21111110 0011111123344445555566666554 444 34555555432222 22345666666666
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
.+...+++++ |.-..+|.-+..-....+..+.-.....|+.+.-.-.++....+.+.+.-+....+.......-.....
T Consensus 640 k~~t~vfa~s-drP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~pr 718 (1096)
T KOG1897|consen 640 KSRTAVFALS-DRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPR 718 (1096)
T ss_pred CCceEEEEeC-CCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChh
Confidence 6655555444 555566654433333333333322333343333222333334444444444433332211122234456
Q ss_pred EEEEcCCCCEEEEEeC-----------C---CeEEEEECCCCceeeeeccCCcC---cEEEEEEcCC-CCEEEEeeC---
Q 012994 294 DIDYSPTGREFVTGSY-----------D---RTIRIFQYNGGRSREIYHTKRMQ---RVFCVKFSCD-ASYVISGSD--- 352 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~-----------d---g~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~s~~~--- 352 (452)
.+++.+....+++.+. . ..++++|-++-+........... .+.++.|..| +.+++.|+.
T Consensus 719 rI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~ 798 (1096)
T KOG1897|consen 719 RICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVY 798 (1096)
T ss_pred heEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeec
Confidence 6777764444443321 1 23667777665554443332223 3555568887 677777763
Q ss_pred -------CCcEEEeecccccccccC
Q 012994 353 -------DTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 353 -------dg~i~iw~~~~~~~~~~~ 370 (452)
.|.|.|+.+..++.+...
T Consensus 799 Pde~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 799 PDENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred cCCCCcccceEEEEEEecCCceeee
Confidence 688999998875554443
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00011 Score=66.98 Aligned_cols=79 Identities=18% Similarity=0.173 Sum_probs=69.6
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCee-EEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR-GLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
.-.|.-+.|+|.- .++|++..+|.|.+..++ .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP~~-dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKM-DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCcc-chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3468889999997 999999999999999987 777888887777887 9999999999999999999999999988654
Q ss_pred CC
Q 012994 145 DS 146 (452)
Q Consensus 145 ~~ 146 (452)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 43
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.00094 Score=64.76 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=92.3
Q ss_pred CeEEEEeCCCCCcceecccCCCc-eEEEEECCC----CCcEEEEEecCCeEEEEEccCCCC--ce----EEEeecccceE
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDT-VISVRFNPA----EPNVLATTASDRSITLYDLRMSSP--AR----KVIMRTKSNSI 251 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~--~~----~~~~~~~~~~~ 251 (452)
..++-.|+++|+.+..+..+... |..++-... .+...+.|-.+..+..||+|.... +. .+.......++
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~ 583 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF 583 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE
Confidence 35888999999999999887654 555543211 123355788889999999987541 11 11112223344
Q ss_pred EEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 252 SWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
...+...+++|+.+|.|++||.- .......+.+-..+|.+|..+.||++|++.+ +..+.+++.
T Consensus 584 --aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 584 --ATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred --EecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 34455579999999999999954 3456666777789999999999999988766 556777775
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.68 E-value=0.04 Score=49.90 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=60.4
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC-----------------CC-EEEEe
Q 012994 289 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD-----------------AS-YVISG 350 (452)
Q Consensus 289 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~-~l~s~ 350 (452)
...+.+++.+|++++.|+.+.=|.|.++|+.++..+..+....+..+.-+..... .. +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3457889999999999998888999999999988777765554333322222111 11 23446
Q ss_pred eCCCcEEEeecccccccccCCh
Q 012994 351 SDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 351 ~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
-.-|.|-||.+..|..+..+..
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEe
Confidence 6789999999999998877653
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00025 Score=64.65 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=66.6
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEE-EEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
..+.-+.|+|.-.++|++..+|.|.+..++ .+.+..+..+. ..++ +++|.|||++|+.|-.||+|++.|++++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPG-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCC-CccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 357789999999999999999999999998 55566665444 4455 99999999999999999999999999998876
Q ss_pred c
Q 012994 369 V 369 (452)
Q Consensus 369 ~ 369 (452)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 6
No 373
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.60 E-value=0.034 Score=49.68 Aligned_cols=222 Identities=11% Similarity=0.104 Sum_probs=105.6
Q ss_pred CCCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe-----c---CCeeeeeecCCCCeEEEeC--------
Q 012994 120 DGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW-----K---NSFWAVDHQWEGDLFATAG-------- 182 (452)
Q Consensus 120 ~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~-------- 182 (452)
+.++|+..+ ..+.|.|.|+.+.... ......... . .....+-.-|+|.+++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~---------P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRK---------PRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS----------EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCC---------CceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 456777766 6788999999754211 111111111 0 1122344457887777752
Q ss_pred CeEEEEeCCCCCcceecccC---CCceEEEEECCCCCcEEEEEec--------------------CCeEEEEEccCCCCc
Q 012994 183 AQVDIWNHNRSQPINSFQWG---TDTVISVRFNPAEPNVLATTAS--------------------DRSITLYDLRMSSPA 239 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~ 239 (452)
|.+.++|-++.+........ ...-..+-|.|.. +++++... ..++.+||+.+.+.+
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~ 235 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLL 235 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEe
Confidence 35888888877666555432 2345667788866 67766542 358999999999999
Q ss_pred eEEEeeccc---ce--EEEccCCCceEEeecCCCeEEEEeCCCcc-----ccceeee----C------------cccceE
Q 012994 240 RKVIMRTKS---NS--ISWNPMEPMNFTAANEDCNCYSYDSRKLD-----EAKCVHM----G------------HESAVM 293 (452)
Q Consensus 240 ~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~----~------------~~~~v~ 293 (452)
+.+.+.... .. ....|....-|+.+.-...|+.|-..... ....+-. + -..-|+
T Consensus 236 Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 236 QTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp EEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred eEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 999886432 23 34466677777777777777766542211 1111100 0 024589
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeee---c-cC--------------CcCcEEEEEEcCCCCEEEEee
Q 012994 294 DIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIY---H-TK--------------RMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~---~-~~--------------~~~~v~~~~~s~~~~~l~s~~ 351 (452)
+|.+|.|.++|..++ .+|.|+.||+......... . .+ -.+...-+..|.||+.|+..+
T Consensus 316 DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999999987766 5899999999875432221 1 10 012346788889999887654
No 374
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.56 E-value=0.037 Score=46.47 Aligned_cols=199 Identities=10% Similarity=0.130 Sum_probs=107.3
Q ss_pred EeecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 104 QYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
.+.+-...+..|+|+|+.+ ++++....+.|...+.. ++.+.. .........-.+++..++.++++..
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-----------i~l~g~~D~EgI~y~g~~~~vl~~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-----------IPLDGFGDYEGITYLGNGRYVLSEE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-----------EE-SS-SSEEEEEE-STTEEEEEET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-----------EeCCCCCCceeEEEECCCEEEEEEc
Confidence 4555566799999999765 55555667777777763 332211 1112234567888888888888774
Q ss_pred --CeEEEEeCCCCCc------ceecc-----cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC---CCCceEEE---
Q 012994 183 --AQVDIWNHNRSQP------INSFQ-----WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM---SSPARKVI--- 243 (452)
Q Consensus 183 --~~i~i~d~~~~~~------~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~--- 243 (452)
+.+.++++..... ...+. .++..+-.++|.+.+..++ ++-...-..+|.++. ........
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~-v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLF-VAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEE-EEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEE-EEeCCCChhhEEEccccCccceeeccccc
Confidence 5688887743221 11111 2345688999999885555 555666677777664 22222211
Q ss_pred ------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-Cc------ccceEEEEEcCCCCEEEEEeCC
Q 012994 244 ------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-GH------ESAVMDIDYSPTGREFVTGSYD 310 (452)
Q Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~------~~~v~~~~~s~~g~~l~s~~~d 310 (452)
.-.....++++|..+.+++.+.....+..+|....-.....+. +. -...-.|+|.++|++.+++ .-
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-Ep 241 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EP 241 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TT
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CC
Confidence 1234578899999999999999999999999543321111111 11 1246789999999765554 55
Q ss_pred CeEEEE
Q 012994 311 RTIRIF 316 (452)
Q Consensus 311 g~i~iw 316 (452)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 555544
No 375
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.53 E-value=0.11 Score=51.02 Aligned_cols=290 Identities=14% Similarity=0.168 Sum_probs=146.3
Q ss_pred cccEEEEEeCCC--Ccc---eEEEeeCCCcEEEEe-CCCCceEEEe--e--cCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 66 RDGISCMAKNPN--YLK---GFFSGSMDGDIRLWD-IANRRTVCQY--S--GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 66 ~~~V~~~~~~~~--~~~---~l~tg~~dg~i~iwd-~~~~~~~~~~--~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
...|.|+.++|- +++ +++.|..+..+.+-- +.+...+... . .-...|.-..|-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999975 334 788888776654433 3333333322 1 12234555566667889999999999887
Q ss_pred EeCCCCCCCCCCCC-CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEE-EEEC-
Q 012994 136 WNVPVATLTDSDDS-TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVIS-VRFN- 212 (452)
Q Consensus 136 wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~~~~- 212 (452)
+-+........... ..-...|........ .....++++++.-..+|..+..-....+.. ..+.. +.|+
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~s-------k~~t~vfa~sdrP~viY~~n~kLv~spls~--kev~~~c~f~s 680 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSS-------KSRTAVFALSDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNS 680 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEee-------CCceEEEEeCCCCEEEEecCCcEEEeccch--HHhhhhccccc
Confidence 76544332221111 111122222222111 111122333333233332221111111110 01111 1121
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCC--ceEEEeecccceEEEccCCCceEEeecC----------C---CeEEEEeCCC
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSP--ARKVIMRTKSNSISWNPMEPMNFTAANE----------D---CNCYSYDSRK 277 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~---~~i~~~d~~~ 277 (452)
+..+..++++. .+.+++.-+..-+. .+++........+++.+....+.+.+.. . ..++++|.++
T Consensus 681 ~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 681 DAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred ccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCc
Confidence 22234454444 45677776654333 3445566677778877733332222211 1 2466777776
Q ss_pred ccccceeeeCccc---ceEEEEEcCC-CCEEEEEeC----------CCeEEEEECCCCceeeee-ccCCcCcEEEEEEcC
Q 012994 278 LDEAKCVHMGHES---AVMDIDYSPT-GREFVTGSY----------DRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSC 342 (452)
Q Consensus 278 ~~~~~~~~~~~~~---~v~~~~~s~~-g~~l~s~~~----------dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~ 342 (452)
............. .+.++.|..| +.++++|+. .|.|.+|.+..+..+... ...-.+.+.++.--
T Consensus 760 f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f- 838 (1096)
T KOG1897|consen 760 FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF- 838 (1096)
T ss_pred eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-
Confidence 6544333222222 3455558877 677887763 588899988874443333 22223455555432
Q ss_pred CCCEEEEeeCCCcEEEeecccccccc
Q 012994 343 DASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 343 ~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
+|++||.- +..|++|++.+.+.+.
T Consensus 839 ngkllA~I--n~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 839 NGKLLAGI--NQSVRLYEWTTERELR 862 (1096)
T ss_pred CCeEEEec--CcEEEEEEccccceeh
Confidence 67777654 4589999998886554
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0024 Score=57.44 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=100.0
Q ss_pred cCCCCeEEEeCC---eEEEEeCCCCCcceecccCCCceEEEEECCCCC------cEEEEEecCCeEEEEEccCCCCce--
Q 012994 172 QWEGDLFATAGA---QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP------NVLATTASDRSITLYDLRMSSPAR-- 240 (452)
Q Consensus 172 ~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~-- 240 (452)
..+.+++...++ .++-.|++.|+.+.....+.. |+-+.+.|+.. ..-+.|-.|..|.-||++-...-.
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 344455555543 488889999999998887666 66667776531 123467788999999998544311
Q ss_pred EEE---eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 241 KVI---MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 241 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
... .....+--++...+...+++|+.+|.|++||. ........+++-..+|..+..+.+|++|++.+ +..+.+-+
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 111 11122223344456667999999999999998 55666677778889999999999999987665 66677766
Q ss_pred CC
Q 012994 318 YN 319 (452)
Q Consensus 318 ~~ 319 (452)
+.
T Consensus 499 t~ 500 (644)
T KOG2395|consen 499 TL 500 (644)
T ss_pred Ee
Confidence 54
No 377
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.49 E-value=0.017 Score=40.87 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=42.5
Q ss_pred ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CC---CEEEEeeCCCcEEE
Q 012994 289 ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DA---SYVISGSDDTNLRL 358 (452)
Q Consensus 289 ~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~---~~l~s~~~dg~i~i 358 (452)
...|++++-... ..++.+-.+|+|-+|+-.. .+...... ..++++++.. ++ .-|++|-.+|.|-+
T Consensus 42 ~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 42 TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 456777776655 5688889999999997632 23333333 3466666654 32 25888988888743
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.042 Score=52.76 Aligned_cols=198 Identities=11% Similarity=0.074 Sum_probs=105.6
Q ss_pred ccccEEEEEeCCCCcceEEEee------CCC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcE-EE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGS------MDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTV-KL 135 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v-~i 135 (452)
....+...+++|+| ..++... .|+ .|.+++. .+.......+ ...+.-.|+|+|..|++.+....+ ++
T Consensus 348 ~~~~vsspaiSpdG-~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 348 QMGNITSAALSRSG-RQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cccCcccceECCCC-CEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 33478899999999 5554433 243 4555554 2333222333 248889999999988887643222 22
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
.+-. ..+.+.+.++..+.... .....|..+.|+|+|
T Consensus 424 ~~~~-----------------------------------------~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG 459 (591)
T PRK13616 424 IRDP-----------------------------------------ATGQLARTPVDASAVAS---RVPGPISELQLSRDG 459 (591)
T ss_pred eccC-----------------------------------------CCceEEEEeccCchhhh---ccCCCcCeEEECCCC
Confidence 2110 01233444554444433 224568999999999
Q ss_pred CcEEEEEecCCeEEE---EEccCCCC-c---eEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 216 PNVLATTASDRSITL---YDLRMSSP-A---RKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
.+++++. +|.|.+ -....+.. + ..+. .......+.|..++..++.....+..++..++...........
T Consensus 460 ~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~ 537 (591)
T PRK13616 460 VRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSR 537 (591)
T ss_pred CEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCC
Confidence 6555444 467766 33222320 0 1111 1223467889999885544444445566656554332211111
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEE
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIR 314 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~ 314 (452)
....++..++-+++ .++....+|.+.
T Consensus 538 n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 538 NLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CccCceEEEecCCc--eEEEEcCCceEE
Confidence 23556777777763 455556666433
No 379
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.43 E-value=0.044 Score=44.25 Aligned_cols=217 Identities=11% Similarity=0.166 Sum_probs=116.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEE-EeecCCCCeeEEEEccCC---CeEEEEeCCCcEEEEeCCCCC--CCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDG---RILVSCGTDCTVKLWNVPVAT--LTDSDDSTDNS 153 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~---~~l~s~~~dg~v~iwd~~~~~--~~~~~~~~~~~ 153 (452)
.++.+--..|.|.-||....+... .+.+. ++.++.+--.+ .+.+.++..-.|-=||..... .....
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~------ 99 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTL------ 99 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeec------
Confidence 556665567778889987654332 23322 23333332222 233444433334446632211 11110
Q ss_pred CCCeeEEEecCCeeeeeecCCCCeEEEeC-----------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
..+.....++....-..+|+|++++..- +.++.|- .+..+..+...-.--+.++|+.+...+.++-
T Consensus 100 -~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~--~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 100 -FEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWL--AGHQVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred -cccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEec--cCCCceeeehhccCCccccccccCcEEEEEc
Confidence 0011111134555566788888855432 1233332 2223333333334456788887776666777
Q ss_pred ecCCeEEEEEc--cCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC
Q 012994 223 ASDRSITLYDL--RMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300 (452)
Q Consensus 223 ~~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (452)
+.+-.|.-||. .++... ..-.++|+++....... ..-.+++..+
T Consensus 177 sln~~V~a~dyd~~tG~~s----------------------------nr~~i~dlrk~~~~e~~------~PDGm~ID~e 222 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLS----------------------------NRKVIFDLRKSQPFESL------EPDGMTIDTE 222 (310)
T ss_pred cCceEEeeeecCCCccccc----------------------------CcceeEEeccCCCcCCC------CCCcceEccC
Confidence 77777877773 333221 22234555543221111 1223555678
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
|++.+++-..|+|...|..+|+.+..+.... ..|++++|--
T Consensus 223 G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt-~qitsccFgG 263 (310)
T KOG4499|consen 223 GNLYVATFNGGTVQKVDPTTGKILLEIKLPT-PQITSCCFGG 263 (310)
T ss_pred CcEEEEEecCcEEEEECCCCCcEEEEEEcCC-CceEEEEecC
Confidence 8888888889999999999999988886664 6799999953
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.00095 Score=64.96 Aligned_cols=107 Identities=9% Similarity=0.150 Sum_probs=76.6
Q ss_pred CCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC--CcCc
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK--RMQR 334 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~ 334 (452)
....++.+++.|.+...|....-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+..+ ....
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 34457888888998888877632222222244678999999999999999999999999999998877665322 2234
Q ss_pred EEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 335 VFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|..+.+..++..++++...|. +|+..-.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~lv~nk 206 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKLVFNK 206 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEEEech
Confidence 555566667777888877776 77664333
No 381
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.0033 Score=56.59 Aligned_cols=141 Identities=15% Similarity=0.186 Sum_probs=98.8
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCc------eEEeecCCCeEEEEeCCCccc-cceeeeCcc-
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM------NFTAANEDCNCYSYDSRKLDE-AKCVHMGHE- 289 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~- 289 (452)
++.++.....++-.|+..++.+........++.+.+.|+... .-++|-.+..+.-||.+-... ......+|.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 445566667788889999999888888888887888776543 235567788999999985433 222222222
Q ss_pred ---cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 290 ---SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 290 ---~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
....|.+-..+| ++++||.+|.|++||- .+....+...+-..+|..+..+.||++|+..+ +..+.+-++
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 234455444444 7999999999999997 55555555455558999999999999988665 456666664
No 382
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.018 Score=55.27 Aligned_cols=221 Identities=10% Similarity=0.047 Sum_probs=102.5
Q ss_pred cEEEEeCCCCceEE--EeecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE
Q 012994 90 DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYV 161 (452)
Q Consensus 90 ~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (452)
.+..||..+.+-.. .+..... -.+++. -++...+.||.+ ..+..||..+........ ...
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~--------m~~-- 340 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP--------MIK-- 340 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC--------Ccc--
Confidence 57788887664321 2211111 122222 256677777753 246677876654321100 000
Q ss_pred ecCCeeeeeecCCCCeEEEeCC-------eEEEEeCCCCCcc--eecccCCCceEEEEECCCCCcEEEEEecCC------
Q 012994 162 WKNSFWAVDHQWEGDLFATAGA-------QVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDR------ 226 (452)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~-------~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------ 226 (452)
.. .......-++.+++.||. .+..||..+.+-. ..+.........+.+ ++ .+.+.||.++
T Consensus 341 -~R-~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g-~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 341 -NR-CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQ-YIYIIGGRTEHIDYTS 415 (557)
T ss_pred -hh-hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CC-EEEEEeCCCccccccc
Confidence 00 001112235566666652 3788998765422 222221111122222 23 6777777653
Q ss_pred -----------------eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC------CeEEEEeCCC-c-ccc
Q 012994 227 -----------------SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED------CNCYSYDSRK-L-DEA 281 (452)
Q Consensus 227 -----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~-~-~~~ 281 (452)
.+..||..+.+=...-.............-++.+++.|+.+ ..+..||..+ . ...
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~ 495 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL 495 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE
Confidence 46677776543211111111111111112234456666543 2467888775 1 222
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeeecc
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDR--TIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~ 329 (452)
...+.........+.+ +|++.++|+.|| .+-.||..+.+-......
T Consensus 496 ~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 496 ITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred ccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhh
Confidence 2222222222222222 778889999888 677888877665544433
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.075 Score=44.69 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=110.0
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
+.|-...|.++.|+|+. +.|++......-.||=-.+|+.+.++.-. -..--.|+|..++++.++--.++.+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 45556679999999998 77777777777778777788888876421 22345678888888888877889999988876
Q ss_pred CCCCCCCCCCCCCCCCeeEEEe-cCCeeeeeecCCCCeEEEeC-C-eEEEEeCCCCCc-c--eeccc-------CCCceE
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAG-A-QVDIWNHNRSQP-I--NSFQW-------GTDTVI 207 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~i~i~d~~~~~~-~--~~~~~-------~~~~i~ 207 (452)
.......... .-++..... +..+..++|.+....+..+- . -+.||.+..... + ..... .-..+.
T Consensus 160 ~t~~~~~~~~---~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 160 DTTVISAKVQ---KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred CccEEeccce---EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 6433222211 011111122 55778899999877666654 2 355555442221 1 10011 123567
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
++.|++..+++++-+.+++.+.-.|....
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecCCC
Confidence 78888877788888888888888876543
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.038 Score=46.04 Aligned_cols=188 Identities=13% Similarity=0.192 Sum_probs=108.7
Q ss_pred EeCCCCcceEEEeeC-----CCcEEEEeCCCC-ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE----------
Q 012994 73 AKNPNYLKGFFSGSM-----DGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW---------- 136 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~-----dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw---------- 136 (452)
.||||| .+|+..-. -|.|-|||...+ +.+..+..|.-.-..+.|.+||+.|+.+. |-|..-
T Consensus 120 vfs~dG-~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl 196 (366)
T COG3490 120 VFSPDG-RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL 196 (366)
T ss_pred ccCCCC-cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch
Confidence 589998 77776533 378999998754 45677888888889999999999888764 333333
Q ss_pred ----------eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C---e--EEEEeCCCCCcceec
Q 012994 137 ----------NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A---Q--VDIWNHNRSQPINSF 199 (452)
Q Consensus 137 ----------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--i~i~d~~~~~~~~~~ 199 (452)
|..++.++....... .....++.-++..++|.++..+. | + -.+=-...++++..+
T Consensus 197 dsMePSlvlld~atG~liekh~Lp~--------~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~ 268 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIEKHTLPA--------SLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL 268 (366)
T ss_pred hhcCccEEEEeccccchhhhccCch--------hhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc
Confidence 322332222111110 01223455666677777665542 1 1 112222334444433
Q ss_pred cc-------CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEE
Q 012994 200 QW-------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYS 272 (452)
Q Consensus 200 ~~-------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (452)
.. ....|-+++.+-....+.+++-..+...+||..++..+.......... ..+. ..-|++.+..|.+.+
T Consensus 269 ~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaG---va~~-~~gf~vssg~G~~~~ 344 (366)
T COG3490 269 DLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAG---VAAA-KGGFAVSSGQGRIIF 344 (366)
T ss_pred CCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccccc---ceec-cCceEEecCCceEEe
Confidence 32 235677888887665555565566778899999988765543322111 1111 122666777777777
Q ss_pred EeC
Q 012994 273 YDS 275 (452)
Q Consensus 273 ~d~ 275 (452)
+..
T Consensus 345 ~s~ 347 (366)
T COG3490 345 YSR 347 (366)
T ss_pred ccc
Confidence 643
No 385
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.061 Score=51.03 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=47.6
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
..++.-++..+|....-++ +.--.|+|++. +|+.+..+.-..+.+-.+.|+.+. .|+....||++.+|++-
T Consensus 42 p~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 42 PFGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL 112 (829)
T ss_pred ccCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc
Confidence 3445556666664211122 33456899996 577766655444588899999775 56677899999999984
No 386
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.23 E-value=0.044 Score=52.58 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=115.6
Q ss_pred ceEEEeeCCC------cEEEEeCCCCceEE--EeecCCCCeeEEEEccCCCeEEEEeCC------CcEEEEeCCCCCCCC
Q 012994 80 KGFFSGSMDG------DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD------CTVKLWNVPVATLTD 145 (452)
Q Consensus 80 ~~l~tg~~dg------~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~ 145 (452)
.+++.||.++ .+..+|..+++... .+. +...-.+++.. ++...++||.| .++..||....+...
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 6778888774 67888887764322 222 22334445554 45778888888 356777877665332
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-------eEEEEeCCCCCcceecccCCCceEEEEECCCCCcE
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-------QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (452)
... ......... ...-+|.+.+.+|. ++..||..+.+--..-.-.. ...+.....-++.+
T Consensus 364 ~a~--------M~~~R~~~~----v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~i 430 (571)
T KOG4441|consen 364 VAP--------MNTKRSDFG----VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKL 430 (571)
T ss_pred cCC--------ccCccccce----eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEE
Confidence 110 000000111 11225666777762 38899987765332221111 22222222223477
Q ss_pred EEEEecCC------eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC-----eEEEEeCCCcccccee-ee
Q 012994 219 LATTASDR------SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC-----NCYSYDSRKLDEAKCV-HM 286 (452)
Q Consensus 219 l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~d~~~~~~~~~~-~~ 286 (452)
.++||.++ .+..||..++.-...-.....-........+..++++|+.++ .+..||..+..-.... ..
T Consensus 431 Yi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 431 YIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred EEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 88888654 467888776653333222222222233334566777777665 3667776653221111 11
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCc
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRT-----IRIFQYNGGR 322 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~-----i~iwd~~~~~ 322 (452)
.....+-...+ ++...++|+.||. |..||..+.+
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 11222222222 5677788887764 5666665544
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.18 E-value=0.087 Score=44.86 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=86.1
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEE-eCCCcc-ccc
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSY-DSRKLD-EAK 282 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-d~~~~~-~~~ 282 (452)
.+.+.++++++..+.++...++.-.+|-..................-+|.+++. +.++...+.....+ +..... ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcceeE
Confidence 688899999985555555334444555555555454444445667788999844 44444444444444 222211 111
Q ss_pred eeeeCcc-cceEEEEEcCCCCEEEEEe---CCCeEEEEECC---CCceee-----eeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 283 CVHMGHE-SAVMDIDYSPTGREFVTGS---YDRTIRIFQYN---GGRSRE-----IYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 283 ~~~~~~~-~~v~~~~~s~~g~~l~s~~---~dg~i~iwd~~---~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
....... ..|+.+.+||||..+|... .++.|.+--+. .+.... .........++.+.|.+++.+++.+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 1111111 2899999999999877655 35777776543 220111 1111223579999999999887766
Q ss_pred eCCC
Q 012994 351 SDDT 354 (452)
Q Consensus 351 ~~dg 354 (452)
...+
T Consensus 184 ~~~~ 187 (253)
T PF10647_consen 184 RSAG 187 (253)
T ss_pred CCCC
Confidence 5543
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0014 Score=38.48 Aligned_cols=34 Identities=15% Similarity=0.432 Sum_probs=30.3
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
..|..++|+|...+||.|+.||.|.++++ +++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 56999999999999999999999999999 55543
No 389
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.17 E-value=0.0018 Score=38.08 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=29.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT 101 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~ 101 (452)
...|.+++|+|.. .+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCcC
Confidence 4569999999998 99999999999999998 5544
No 390
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.14 E-value=0.3 Score=48.04 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCceEEEEECCCC--CcEEEEEecCCeEEEEEccCCCC
Q 012994 203 TDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSP 238 (452)
Q Consensus 203 ~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~ 238 (452)
...|..+.|+|.+ +..|++-..|+++++||+.....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCCC
Confidence 4678899999974 46788888899999999976443
No 391
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.14 E-value=0.17 Score=45.13 Aligned_cols=70 Identities=19% Similarity=0.082 Sum_probs=43.7
Q ss_pred cccceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceee---eeccCCcCcEEEEEEcCCCCEEEEeeCCCcEE
Q 012994 288 HESAVMDIDYSP-------TGREFVTGSYDRTIRIFQYNGGRSRE---IYHTKRMQRVFCVKFSCDASYVISGSDDTNLR 357 (452)
Q Consensus 288 ~~~~v~~~~~s~-------~g~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 357 (452)
+...++.+.|.. .|.++++.-..+.|....+..+.... .+.......+..+++.|||.+.++-+.+|.|.
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 335667777753 45566666666788888886553321 22233334799999999999888888888764
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.16 Score=44.32 Aligned_cols=221 Identities=9% Similarity=0.051 Sum_probs=119.5
Q ss_pred EEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 012994 72 MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (452)
Q Consensus 72 ~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (452)
-.|.++...++.+--..+.|.-|+..+++. ..+. +.+.+.++.....+..|+++.. -+.+++.+.+..........
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 357777634666667788899999876643 2333 3344555555555556666543 46677775554311110000
Q ss_pred CCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-----------eEEEEeCC-CCCcceecccCCCceEEEEECCCCCcEE
Q 012994 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-----------QVDIWNHN-RSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
. -...+..+.....++|.+.+...+ .-.+|-+. .+..+..+..+-..-+.++|+|++..++
T Consensus 106 ~-------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly 178 (307)
T COG3386 106 D-------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLY 178 (307)
T ss_pred C-------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEE
Confidence 0 001133445566777776665433 12455444 4555555555556678899999997666
Q ss_pred EEEecCCeEEEEEccC--CCCce---EEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 220 ATTASDRSITLYDLRM--SSPAR---KVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~--~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
++=+..+.|.-|++.. ..... .... .+....++...++...+++....+.+..|+.. ......+. -....
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~ 256 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKR 256 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCC
Confidence 6666678888888752 11111 1111 23344555555555444333333488888877 33333332 23255
Q ss_pred eEEEEEcC-CCCEEE
Q 012994 292 VMDIDYSP-TGREFV 305 (452)
Q Consensus 292 v~~~~~s~-~g~~l~ 305 (452)
+++++|-- +.+.|+
T Consensus 257 ~t~~~FgG~~~~~L~ 271 (307)
T COG3386 257 PTNPAFGGPDLNTLY 271 (307)
T ss_pred CccceEeCCCcCEEE
Confidence 66666643 344443
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0007 Score=54.00 Aligned_cols=102 Identities=10% Similarity=0.044 Sum_probs=57.5
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCc--eEEeecCCCeEEEEeCCCccccceeeeCcc-cceE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM--NFTAANEDCNCYSYDSRKLDEAKCVHMGHE-SAVM 293 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~v~ 293 (452)
.-+++|+.+|.|.+|................-......|.+.. +.+++..++.++.|+.......-.. ..|. .++.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e 149 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGE 149 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcc
Confidence 5688999999999998763332222222222222233444444 8899999999999998765433222 2343 3333
Q ss_pred EEEEcCCCCEEEEE--eCCCeEEEEECC
Q 012994 294 DIDYSPTGREFVTG--SYDRTIRIFQYN 319 (452)
Q Consensus 294 ~~~~s~~g~~l~s~--~~dg~i~iwd~~ 319 (452)
.+..+..+..++.+ |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 34344444444444 455555555554
No 394
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.06 E-value=0.16 Score=43.16 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=52.5
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC------CCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC------DASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.++++.=+.|..-|.|-+||+...-..+..........+.|+..| .|.+|+---.||+|..||..+|+.+..+.
T Consensus 209 d~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 209 DADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 334444455666788999998754333343444455677788766 56777766679999999999999887775
Q ss_pred hh
Q 012994 372 PR 373 (452)
Q Consensus 372 ~~ 373 (452)
..
T Consensus 289 ~~ 290 (336)
T TIGR03118 289 DP 290 (336)
T ss_pred CC
Confidence 43
No 395
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.051 Score=47.20 Aligned_cols=145 Identities=15% Similarity=0.230 Sum_probs=91.4
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee------------
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV------------ 284 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------------ 284 (452)
+.|+.|..+| +.++++..............+..+...+.-+.+++.++ +.++.+++.........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd--~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD--GQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC--CccEEEEchhhcccccccccccccccccc
Confidence 6788898888 99999954444444444455888888887777666654 99999998776544411
Q ss_pred -eeCcccceEEEE--EcCCC-CEEEEEeCCCeEEEEECCCC-----ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 285 -HMGHESAVMDID--YSPTG-REFVTGSYDRTIRIFQYNGG-----RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 285 -~~~~~~~v~~~~--~s~~g-~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
.......+...+ -...+ ..|+++ ....|.+|..... +....+... ..+.+++|. ++.|+.|..+ .
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeCC-c
Confidence 112223444444 11233 344444 4558998887763 233333333 678999998 5567777655 4
Q ss_pred EEEeecccccccccC
Q 012994 356 LRLWKAKASEQLGVL 370 (452)
Q Consensus 356 i~iw~~~~~~~~~~~ 370 (452)
..+.|+.++.....+
T Consensus 159 f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 159 FYLIDLNTGSPSELL 173 (275)
T ss_pred eEEEecCCCCceEEe
Confidence 788899877664443
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.93 E-value=0.19 Score=42.15 Aligned_cols=195 Identities=8% Similarity=0.057 Sum_probs=117.2
Q ss_pred ceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 205 TVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
....+.|..++ .++-+.+.-| .|+.+|+.+++.......+...-.--....++.++...=.++...+||..+.+...
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEE
Confidence 44567775555 6777777666 69999999998887776655443222222355667777788999999999877665
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC----CcCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK----RMQRVFCVKFSCDASYVISGSDDTNLRL 358 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~s~~~dg~i~i 358 (452)
...... .=+.++ .||..|+.+.....++++|..+.+....+... ....++-+.|- +|...|=.-....|..
T Consensus 125 ~~~y~~--EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 125 TFPYPG--EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEE-SS--S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEecCC--cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 544332 334555 47778888877888999998876655443221 12346677876 6766665556668888
Q ss_pred eecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 359 WKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 359 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
.|..+|+....+.-..-..... ....+.......++|+++|....+.
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~--~~~~~~~~~dVLNGIAyd~~~~~l~ 246 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVG--RDKSRQPDDDVLNGIAYDPETDRLF 246 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHT--STTST--TTS-EEEEEEETTTTEEE
T ss_pred EeCCCCeEEEEEEhhHhhhccc--ccccccccCCeeEeEeEeCCCCEEE
Confidence 8999999988776443221100 0001122355678999988766543
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.021 Score=56.53 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=94.3
Q ss_pred ceEEEEECCCCCcEE-EEEecCCeEEEEEccCCCCceE------------EEeecccceEEEccCCCceEEeecCCCeEE
Q 012994 205 TVISVRFNPAEPNVL-ATTASDRSITLYDLRMSSPARK------------VIMRTKSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
++..+...++..... +..+.+-.|..||++....... +.......++.|+|.-....++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455666666652222 2233344788999876432221 111233467889998888889999999998
Q ss_pred EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ceeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 272 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG--RSREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
+..+.........+ .-....++++|+|.|+.++.|...|++.-|...-. ..+..........|.+|+|-....++++
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88776554433332 34567899999999999999999999998876533 1122222222367999999877777665
No 398
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.87 E-value=0.22 Score=41.84 Aligned_cols=178 Identities=8% Similarity=0.120 Sum_probs=110.9
Q ss_pred eeeecCCCCeEEEeC--C--eEEEEeCCCCCcceecccCCC-ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE
Q 012994 168 AVDHQWEGDLFATAG--A--QVDIWNHNRSQPINSFQWGTD-TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~--~--~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (452)
.+.+..++.++-+.| | .++.+|+.+++.......... .--.++... ..++...-.++...+||..+.+.+..+
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEEEE
Confidence 455657777777776 3 599999999987765544322 223344443 256666778899999999999888888
Q ss_pred EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-c---ccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 243 IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-H---ESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~---~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
......-.++ .++. .++.+.....++.+|..+......+... . -..++.+.|- +|...|=.-....|...|.
T Consensus 127 ~y~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 127 PYPGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp E-SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred ecCCcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence 8877777777 3344 4666777889999998876554433221 1 1235566665 6666665556667888899
Q ss_pred CCCceeeeec-----------c---CCcCcEEEEEEcCCCCEEEEee
Q 012994 319 NGGRSREIYH-----------T---KRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 319 ~~~~~~~~~~-----------~---~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
.+|.....+. . ....-.+.++|.|....|+..|
T Consensus 203 ~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 203 ETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 9888765541 0 1134589999998766555444
No 399
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.87 E-value=0.25 Score=45.90 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=75.6
Q ss_pred eEEEEECCCCCcEEEEEecCCe----EEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC----------CeEE
Q 012994 206 VISVRFNPAEPNVLATTASDRS----ITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED----------CNCY 271 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~ 271 (452)
+....++|++..++++-+..|. ++++|+.+++.+...........+.|.+++..++.+.... ..++
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4467889999555555555554 9999999997665443333334499999998887776433 3478
Q ss_pred EEeCCCcccc-ceeeeCcccc--eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC
Q 012994 272 SYDSRKLDEA-KCVHMGHESA--VMDIDYSPTGREFVTGSY---D-RTIRIFQYNGG 321 (452)
Q Consensus 272 ~~d~~~~~~~-~~~~~~~~~~--v~~~~~s~~g~~l~s~~~---d-g~i~iwd~~~~ 321 (452)
.+.+.+.... ..++...... ...+..++|+++|+..+. + ..+.+.|+..+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 8888765443 3333333322 568899999999775433 2 45888888875
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.87 E-value=0.35 Score=44.12 Aligned_cols=274 Identities=11% Similarity=0.095 Sum_probs=132.2
Q ss_pred CCCCcceEEEeeCCCcEEEEeCCCCc-----eEEEeecCCCCeeEEEEcc-----CCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 75 NPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQGAVRGLTVST-----DGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 75 ~~~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
++++...+++||..|.++||+..... .+...+ -..+|..|+.-+ +...||. =.-..+.+|.+......
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCC
Confidence 34455789999999999999986543 222222 456888887643 2234554 34567888887322111
Q ss_pred CCCCCCCCCCCCeeEEE--ecCCeeeeeecCCC-----CeEEE--eCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 145 DSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEG-----DLFAT--AGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
. ...........+. .......+..-+-| .++.. -+|.+.+|+-+.......+.. .--...+.+.+..
T Consensus 111 ~---~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t 186 (418)
T PF14727_consen 111 V---EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT 186 (418)
T ss_pred c---ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC
Confidence 0 0000011111122 22233333333221 22322 347888888766543333332 2222346666665
Q ss_pred CcEEEEEecCCeEEEEEccCCC-----------------------CceEEEeecccceEEEcc---CCCceEEeecCCCe
Q 012994 216 PNVLATTASDRSITLYDLRMSS-----------------------PARKVIMRTKSNSISWNP---MEPMNFTAANEDCN 269 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~-----------------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 269 (452)
+.|++++.+..+..|....-. +...+..+..+..+.... ....+++.| ...
T Consensus 187 -Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~ 263 (418)
T PF14727_consen 187 -DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERS 263 (418)
T ss_pred -CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cce
Confidence 678888888889888743210 112223333333332222 222222222 222
Q ss_pred EEEEeCCCccccceeeeCcccceEEEE-E----cCCC---CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcE--EEEE
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDID-Y----SPTG---REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV--FCVK 339 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~-~----s~~g---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v--~~~~ 339 (452)
++..+... ...... .......+++ | ..++ ..++.++.++.+.||.=. +..+.....+ .+| .-..
T Consensus 264 Lf~l~~~G--~l~~~k-rLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~-~PVal~v~~ 337 (418)
T PF14727_consen 264 LFCLKDNG--SLRFQK-RLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPH-VPVALSVAN 337 (418)
T ss_pred EEEEcCCC--eEEEEE-ecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCC-CCEEEEecc
Confidence 33333221 111111 1111111111 1 1122 248888899999998643 3333333333 333 2223
Q ss_pred EcCCCCEEEEeeCCCcEEEeeccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
|..-...|++-+.+|.+.+-=+.|
T Consensus 338 ~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 338 FNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred cCCCCceEEEEcCCCcEEEEEeCC
Confidence 333345788888899998865544
No 401
>PHA02713 hypothetical protein; Provisional
Probab=96.86 E-value=0.029 Score=53.92 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=87.5
Q ss_pred CCCeEEEeCC--------eEEEEeCCCCCcc--eecccCCCceEEEEECCCCCcEEEEEecCC-----eEEEEEccCCCC
Q 012994 174 EGDLFATAGA--------QVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDR-----SITLYDLRMSSP 238 (452)
Q Consensus 174 ~~~~~~~~~~--------~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 238 (452)
++.+++.||. .+..||..++.-. ..+....... +++.. ++ .+.+.||.++ .+..||..+..-
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~~-~g-~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAVI-DD-TIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEEE-CC-EEEEECCcCCCCCCceEEEEECCCCeE
Confidence 4556666551 3677887766422 2222111111 22222 23 6778888764 478888776532
Q ss_pred ceEEEeecccceEEEccCCCceEEeecCC-----------------------CeEEEEeCCCcc--ccceeeeCcccceE
Q 012994 239 ARKVIMRTKSNSISWNPMEPMNFTAANED-----------------------CNCYSYDSRKLD--EAKCVHMGHESAVM 293 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~i~~~d~~~~~--~~~~~~~~~~~~v~ 293 (452)
...-.........+...-++.+++.|+.+ ..+..||..+.. .......+. ...
T Consensus 380 ~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~- 457 (557)
T PHA02713 380 KMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-IRP- 457 (557)
T ss_pred EECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-ccC-
Confidence 11111111111111112245556666543 246777765421 111110111 111
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEECCC-CceeeeeccCC-cCcEEEEEEcCCCCEEEEeeCCC--cEEEeeccc
Q 012994 294 DIDYSPTGREFVTGSYD------RTIRIFQYNG-GRSREIYHTKR-MQRVFCVKFSCDASYVISGSDDT--NLRLWKAKA 363 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg--~i~iw~~~~ 363 (452)
+++ .-+|++.+.|+.+ ..+..||..+ .+-........ ......+.+ +|++.++||.|| .+-.||..+
T Consensus 458 ~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 122 2256777777754 2467899887 44332221111 112222333 788888999888 566677665
Q ss_pred cc
Q 012994 364 SE 365 (452)
Q Consensus 364 ~~ 365 (452)
.+
T Consensus 535 ~~ 536 (557)
T PHA02713 535 YE 536 (557)
T ss_pred cc
Confidence 54
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.03 Score=55.20 Aligned_cols=102 Identities=18% Similarity=0.274 Sum_probs=66.7
Q ss_pred ceEEEeeCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANR-RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
..++.|+..|.|-..|+... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++....+.....+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~---- 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV---- 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc----
Confidence 56888999999998887542 1112222345799999999999999999999999999998876544333322211
Q ss_pred EEEecCCeeeeeecCCCCeEEEeCCeEEEEeC
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (452)
..+..+.+..++..+.+++..-.+|.+
T Consensus 176 -----t~vi~v~~t~~nS~llt~D~~Gsf~~l 202 (1206)
T KOG2079|consen 176 -----TGVIFVGRTSQNSKLLTSDTGGSFWKL 202 (1206)
T ss_pred -----ceEEEEEEeCCCcEEEEccCCCceEEE
Confidence 123334444455566666643335554
No 403
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.79 E-value=0.15 Score=49.12 Aligned_cols=226 Identities=13% Similarity=0.140 Sum_probs=112.8
Q ss_pred CCCeEEEEeCCC------cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--------eE
Q 012994 120 DGRILVSCGTDC------TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--------QV 185 (452)
Q Consensus 120 ~~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~i 185 (452)
.+..++.||.++ .+..+|..++.......... ...-.+++ .-++.++++||. .+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-----------~r~~~~~~-~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-----------PRCRVGVA-VLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-----------ccccccEE-EECCEEEEEccccCCCcccceE
Confidence 455667777663 57777876663322211110 11111122 224456666651 37
Q ss_pred EEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecCCe-----EEEEEccCCCCceEEEeecccceEEEccCCC
Q 012994 186 DIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASDRS-----ITLYDLRMSSPARKVIMRTKSNSISWNPMEP 258 (452)
Q Consensus 186 ~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
..||..+++-.. .+........ ++ .-++.+.++||.||. +..||..+.+-...-.............-++
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~-v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFG-VA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGG 428 (571)
T ss_pred EEecCCCCceeccCCccCccccce-eE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECC
Confidence 788887766333 2221111111 12 123378889998864 7778877655333222222333444444556
Q ss_pred ceEEeecCCC------eEEEEeCCCccc-cceeeeCcccceEEEEEcCCCCEEEEEeCCCe-----EEEEECCCCceeee
Q 012994 259 MNFTAANEDC------NCYSYDSRKLDE-AKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-----IRIFQYNGGRSREI 326 (452)
Q Consensus 259 ~~~~~~~~~~------~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~-----i~iwd~~~~~~~~~ 326 (452)
.++++|+.++ .+..||..+..= ....+........ ++ .-++.+.+.|+.|+. |..||..+.+....
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v 506 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV 506 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc
Confidence 6677776443 467777665321 0001100111111 22 226778888887763 77788887665444
Q ss_pred eccCCc-CcEEEEEEcCCCCEEEEeeCCCc-----EEEeecccc
Q 012994 327 YHTKRM-QRVFCVKFSCDASYVISGSDDTN-----LRLWKAKAS 364 (452)
Q Consensus 327 ~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~-----i~iw~~~~~ 364 (452)
...... ..+..+.+ ++...+.|+.||. |..||..+.
T Consensus 507 ~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 507 APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 322211 22222222 6677778887764 555655443
No 404
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.14 Score=40.75 Aligned_cols=173 Identities=12% Similarity=0.162 Sum_probs=98.9
Q ss_pred CCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccc
Q 012994 174 EGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSN 249 (452)
Q Consensus 174 ~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 249 (452)
+|.++.+.+ ..|++||+.+++.+.+.......+..=-...-+..+..-.-.+|.-..+|.++.+.+..+..++..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 445565555 3699999999987765543322221111111133445556678888999999998888887777666
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-c---cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH-E---SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE 325 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~ 325 (452)
.++.... . ++.+.....++.-|..+......+.... . ..++.+.|- +|...|-.-.+..|...+.++|+...
T Consensus 135 gLt~d~~--~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLTSDDK--N-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeecCCc--c-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 5554332 2 5566666677777766654443332211 1 123334443 55555544444455555666665544
Q ss_pred ee-----------ccCCcCcEEEEEEcCCC-CEEEEe
Q 012994 326 IY-----------HTKRMQRVFCVKFSCDA-SYVISG 350 (452)
Q Consensus 326 ~~-----------~~~~~~~v~~~~~s~~~-~~l~s~ 350 (452)
.+ ...+..-.+.+++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 33 22233467889999977 556655
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.65 E-value=0.84 Score=45.50 Aligned_cols=62 Identities=10% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCeEEEEECCCCceeeeeccCCcC--------cEEEEEEcC-CCC---EEEEeeCCCcEEEeecccccccccCC
Q 012994 310 DRTIRIFQYNGGRSREIYHTKRMQ--------RVFCVKFSC-DAS---YVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~s~-~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+.|.-.|.++|+....++..|.. ...-+.+.. +|+ .++.++.+|.+++.|..+|+.+....
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 456778888899888777553311 111222322 553 78899999999999999999886543
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.51 E-value=0.069 Score=50.89 Aligned_cols=123 Identities=15% Similarity=0.171 Sum_probs=79.0
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEc--cCCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVS--TDGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
....-+.-+.-+ +..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.++.-.....
T Consensus 30 ~~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCcceEeecccC-cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344555555544 433444445579999998876543322 357889999995 5889999999999999996533221
Q ss_pred CCCCCCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeCCeEEEEeCC
Q 012994 144 TDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAGAQVDIWNHN 191 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~ 191 (452)
......- .....+.... ...++....|.++|.+++..|.++.|+|-.
T Consensus 109 ~~~~p~w-~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 109 TNKGPSW-APIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDKW 156 (631)
T ss_pred hcCCccc-ceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECCC
Confidence 1111110 0112222222 236788899999999999999999999743
No 407
>PRK10115 protease 2; Provisional
Probab=96.47 E-value=1.1 Score=44.58 Aligned_cols=60 Identities=10% Similarity=0.028 Sum_probs=38.7
Q ss_pred ccEEEEEeCCCCcceEEEe-eCC----CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC
Q 012994 67 DGISCMAKNPNYLKGFFSG-SMD----GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT 129 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg-~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~ 129 (452)
-.+..+.++|++ ++|+.+ +.+ ..|++.|+.++..+...-.... ..++|.+|++.|+-...
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEe
Confidence 357778899998 666654 223 3588999988864322211211 56899999887666544
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.52 Score=39.82 Aligned_cols=271 Identities=13% Similarity=0.028 Sum_probs=135.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec--CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 143 (452)
.+-+..+.++. ++...+..+.-++|.|+.+......+.. -.+--.++.. .|++...+..|.-+.+.|+.+..
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps- 159 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS- 159 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC-
Confidence 34555666765 4566677777899999987654332211 1133344444 58899988877777888987653
Q ss_pred CCCCCCCCCCCCCeeEE--Ee-cCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc---eecccCCCceEEEEECCCCCc
Q 012994 144 TDSDDSTDNSSEPLAVY--VW-KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI---NSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~~~ 217 (452)
.+...- .. ......++.+.+-.+.+.-++.+.+.|+.....- ..... ...+.++..+++-
T Consensus 160 -----------sP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~-g~g~~sv~vsdnr-- 225 (370)
T COG5276 160 -----------SPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT-GPGTYSVSVSDNR-- 225 (370)
T ss_pred -----------CceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-CCceEEEEecCCe--
Confidence 222111 11 1122456667777777777888899988765422 22221 2267777777643
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--CcccceE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--GHESAVM 293 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~v~ 293 (452)
.+++.. +--+.+-|....+....+..- ..+.++.-.+-..........+.-+-+.|..+...+..... .....-.
T Consensus 226 ~y~vvy-~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~ 304 (370)
T COG5276 226 AYLVVY-DEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAA 304 (370)
T ss_pred eEEEEc-ccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCcccc
Confidence 233333 344677787776655544322 22223322222223333333333344444443322211100 0000111
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
.+.. .|.++..+..+ ...+-+....+...... .....+.+.+.+-+.+.+.+...++.+.||+.
T Consensus 305 gi~a--y~~y~yiadkn-~g~vV~~s~~s~m~~~~-g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 305 GIRA--YGNYNYIADKN-TGAVVDASPPSMMDKRP-GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ceEE--ecCeeEeccCC-ceEEEeCCChhhccccc-CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1221 22333333333 33344443322221111 11122344444556668888889999999985
No 409
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.16 E-value=0.99 Score=41.06 Aligned_cols=146 Identities=14% Similarity=0.142 Sum_probs=75.4
Q ss_pred ccEEEEEeCCCCcceEEEee-----------CCC-cEEEEeCCC--Cc--eEEEeecCCCCeeEEEEccCCCeEEEEeCC
Q 012994 67 DGISCMAKNPNYLKGFFSGS-----------MDG-DIRLWDIAN--RR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~-----------~dg-~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 130 (452)
.....|+|.++| +++++-. ..+ .|.+++-.+ +. ....+...-.....|++.+++ +++ ++..
T Consensus 14 ~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 456789999998 7666532 223 777776443 22 233444334456889999888 444 4444
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCe-eEEE-----ecCCeeeeeecCCCCeEEEeCC---------------------
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPL-AVYV-----WKNSFWAVDHQWEGDLFATAGA--------------------- 183 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------------------- 183 (452)
...++.|......... ..+.+ ..+. .......+.+.++|.+.++.+.
T Consensus 91 ~i~~~~d~~gdg~ad~------~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g 164 (367)
T TIGR02604 91 DILFLRDKDGDDKADG------EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGG 164 (367)
T ss_pred eEEEEeCCCCCCCCCC------ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCc
Confidence 3333435432211100 00000 0010 1233567888999988776551
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
.+.-++..+++ ...+...-.....++|++++ +++++-.
T Consensus 165 ~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 165 GLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred eEEEEecCCCe-EEEEecCcCCCccceECCCC-CEEEEcc
Confidence 23333333332 22232223345678999977 5665543
No 410
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.13 E-value=0.4 Score=45.83 Aligned_cols=69 Identities=20% Similarity=0.349 Sum_probs=46.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
..-++++.-+|.+ .-++.+..||+|++|++...+...... ...+-..+.|...| |+++..|..+--|.-
T Consensus 14 ~e~~~aiqshp~~-~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG-QSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCC-ceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheeec
Confidence 3457888888998 889999999999999987654422111 22334456665444 666667777777753
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.95 E-value=1.2 Score=40.28 Aligned_cols=220 Identities=12% Similarity=0.105 Sum_probs=101.4
Q ss_pred ceEEEee-CCCcEEEEeCCCC----ceEEEeec---CC----CCeeEEEEccCCCeEEEEeC------CCcEEEEeCCCC
Q 012994 80 KGFFSGS-MDGDIRLWDIANR----RTVCQYSG---HQ----GAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVA 141 (452)
Q Consensus 80 ~~l~tg~-~dg~i~iwd~~~~----~~~~~~~~---h~----~~v~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~ 141 (452)
++|+..+ ..+.|+|.|+.+. +..+.+.. +. ..-..+.--|+|+.++|+-. -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 5566555 7889999998743 33444432 11 12233444578888887622 245666666544
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe----------------------CCeEEEEeCCCCCcceec
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA----------------------GAQVDIWNHNRSQPINSF 199 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~i~i~d~~~~~~~~~~ 199 (452)
......+..... ..--+.+.+.|..+++++. +..+.+||+.+.+.++.+
T Consensus 168 ~v~g~We~~~~~---------~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 168 EVKGRWEKDRGP---------QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp -EEEE--SB-TT---------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred cccceeccCCCC---------CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 332221111000 0112344555655555554 235999999999999998
Q ss_pred ccCCC--ceEEEEEC--CCCCcEEEEEecCCeEEEEEc-cCCC----CceEEE------------------eecccceEE
Q 012994 200 QWGTD--TVISVRFN--PAEPNVLATTASDRSITLYDL-RMSS----PARKVI------------------MRTKSNSIS 252 (452)
Q Consensus 200 ~~~~~--~i~~~~~~--~~~~~~l~~~~~dg~i~i~d~-~~~~----~~~~~~------------------~~~~~~~~~ 252 (452)
..... ....+.|. |....-++.+...++|-.|-- ..+. .+..+. ...-++.+.
T Consensus 239 dLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~ 318 (461)
T PF05694_consen 239 DLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL 318 (461)
T ss_dssp ES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE
T ss_pred ecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE
Confidence 87543 34455554 444333444444555555533 2221 111111 023457888
Q ss_pred EccCCCceEEeecCCCeEEEEeCCCccccceeeeCc------------------ccceEEEEEcCCCCEEEEEe
Q 012994 253 WNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH------------------ESAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------------~~~v~~~~~s~~g~~l~s~~ 308 (452)
.+.+.+++++++=..|.++.||+.....+...-.-. .+...-+..|.||+.|...+
T Consensus 319 iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 319 ISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp E-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 999999999999999999999999876665443211 11234567777887766543
No 412
>PHA03098 kelch-like protein; Provisional
Probab=95.92 E-value=0.26 Score=47.50 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=66.8
Q ss_pred ceEEEeeCCC------cEEEEeCCCCceEEE--eecCCCCeeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCCCCC
Q 012994 80 KGFFSGSMDG------DIRLWDIANRRTVCQ--YSGHQGAVRGLTVSTDGRILVSCGTD-----CTVKLWNVPVATLTDS 146 (452)
Q Consensus 80 ~~l~tg~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 146 (452)
.+++.||.++ .+..||..+.+.... +.........+. -++..++.||.+ ..+..||..+......
T Consensus 296 ~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 296 VIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred EEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 5666776543 577888776554221 111111112222 256677777765 3467788776644321
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--------CeEEEEeCCCCCcce--ecccCCCceEEEEECCCCC
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~ 216 (452)
..... ...-.++ ...++.+++.+| ..+..||..+++-.. .+...... .++... ++
T Consensus 374 ~~lp~-----------~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~-~~- 438 (534)
T PHA03098 374 PPLIF-----------PRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH-DG- 438 (534)
T ss_pred CCcCc-----------CCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE-CC-
Confidence 11100 0000111 123556666665 247888887654322 11111111 122222 23
Q ss_pred cEEEEEecCC--------eEEEEEccCCC
Q 012994 217 NVLATTASDR--------SITLYDLRMSS 237 (452)
Q Consensus 217 ~~l~~~~~dg--------~i~i~d~~~~~ 237 (452)
.+++.|+.++ .+.+||..+.+
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCCc
Confidence 5667776432 37888877653
No 413
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.95 Score=38.38 Aligned_cols=162 Identities=10% Similarity=0.103 Sum_probs=100.4
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA- 183 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 183 (452)
+.+-...|.++.|+|+.+.|++......-.||=...|.++....... -.....+.+..++.+.++...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------FSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------cCChhHeEEecCCEEEEEehhc
Confidence 34455569999999999999988887777777666665544332221 223345566666666666653
Q ss_pred -eEEEEeCCCCCcce----------ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE---------
Q 012994 184 -QVDIWNHNRSQPIN----------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--------- 243 (452)
Q Consensus 184 -~i~i~d~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 243 (452)
.+.++.+.....+. .....+...-.++|.|.+ ..|+.+-+-.-+.||............
T Consensus 150 ~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 150 RALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred ceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 45555544432211 111124557789999988 455666666677777765333111111
Q ss_pred --eecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 244 --MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 244 --~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
.-..+..+.+.+..+.+++.+.+++.+.-.|....
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 12345677788888888888888888887777643
No 414
>PHA03098 kelch-like protein; Provisional
Probab=95.86 E-value=0.48 Score=45.72 Aligned_cols=173 Identities=7% Similarity=0.056 Sum_probs=78.9
Q ss_pred eEEEEeCCCCCccee--cccCCCceEEEEECCCCCcEEEEEecC-----CeEEEEEccCCCCceEEEeecccceEEEccC
Q 012994 184 QVDIWNHNRSQPINS--FQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDLRMSSPARKVIMRTKSNSISWNPM 256 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (452)
++..||..+.+.... +.........+.+ ++ .+++.||.+ ..+..||..+..-...-....+....+....
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~-~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~ 388 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NN-RIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV 388 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEE--CC-EEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence 467788776554221 1111111222222 23 677888765 3467788765432111111111111111222
Q ss_pred CCceEEeecCC------CeEEEEeCCCcc--ccceeeeCcccceEEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Q 012994 257 EPMNFTAANED------CNCYSYDSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSYD--------RTIRIFQYNG 320 (452)
Q Consensus 257 ~~~~~~~~~~~------~~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--------g~i~iwd~~~ 320 (452)
++.+++.|+.. ..+..||..+.. .......+.. .. ++ ...++..++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-Cc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 44556665521 457788876421 1110000111 11 12 22356666777643 2388899887
Q ss_pred CceeeeeccCC-cCcEEEEEEcCCCCEEEEeeCC-----CcEEEeecccc
Q 012994 321 GRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKAS 364 (452)
Q Consensus 321 ~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 364 (452)
++-........ ......+.+ ++++++.||.+ ..+.+||..+.
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 65433221111 011122222 67777777754 45777777654
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.80 E-value=2.4 Score=42.44 Aligned_cols=162 Identities=15% Similarity=0.143 Sum_probs=91.9
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCee-------------EEEEcc--CCCeEEEEeC----------CCcEE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR-------------GLTVST--DGRILVSCGT----------DCTVK 134 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~l~s~~~----------dg~v~ 134 (452)
..++.++.|+.+.-.|..+|+.+..+. ..+.|. .+.-.| .+..+++|+. +|.|+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 478889999999999999999887764 222221 111122 2345666643 68899
Q ss_pred EEeCCCCCCCCCCCCCCCCCC----CeeEEE--ecCCeeeeeecCCCCeEEEe--------------------CCeEEEE
Q 012994 135 LWNVPVATLTDSDDSTDNSSE----PLAVYV--WKNSFWAVDHQWEGDLFATA--------------------GAQVDIW 188 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~--------------------~~~i~i~ 188 (452)
-+|..+++..-.......... .-.... ..+.-...++.+...++... .+.+.-.
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL 419 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL 419 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence 999999988765443211100 000111 11111233344433332221 1347777
Q ss_pred eCCCCCcceecccCCCc---------eEEEEECC-CC--CcEEEEEecCCeEEEEEccCCCCceEE
Q 012994 189 NHNRSQPINSFQWGTDT---------VISVRFNP-AE--PNVLATTASDRSITLYDLRMSSPARKV 242 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~---------i~~~~~~~-~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (452)
|.++++..-.++..... ..-+.+.. ++ ...++.++.+|.+.++|.++++.+...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88888887776652211 11112222 23 137889999999999999988766553
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.71 E-value=0.86 Score=37.18 Aligned_cols=149 Identities=17% Similarity=0.269 Sum_probs=82.0
Q ss_pred cccEEEEEeCCCCcceEEEeeCC----------CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMD----------GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVK 134 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~ 134 (452)
....+.-..+|+| ++ +.|... |.++.|-.. ..+..+...-+--+.++|+.+.+.+. +-+.+-+|.
T Consensus 108 knR~NDgkvdP~G-ry-y~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDG-RY-YGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCC-ce-eeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 3445555667887 66 444331 333444321 11122222223346788988776554 445677787
Q ss_pred EEe--CCCCCCCCCCCCCCCC-CCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceecccCCCceEEE
Q 012994 135 LWN--VPVATLTDSDDSTDNS-SEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 135 iwd--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
-|| ..++............ ..+.. ....-.++...+|.++++. +++|...|..+++.+..+......|+|+
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e----~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFE----SLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcC----CCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 788 6666543221110000 00000 0011123345567766554 4789999999999999999999999999
Q ss_pred EECCCCCcEEEEE
Q 012994 210 RFNPAEPNVLATT 222 (452)
Q Consensus 210 ~~~~~~~~~l~~~ 222 (452)
+|-..+-.++++.
T Consensus 260 cFgGkn~d~~yvT 272 (310)
T KOG4499|consen 260 CFGGKNLDILYVT 272 (310)
T ss_pred EecCCCccEEEEE
Confidence 9975433444433
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.64 E-value=1.3 Score=41.48 Aligned_cols=153 Identities=10% Similarity=0.085 Sum_probs=88.5
Q ss_pred ccEEEEEeCCCCcceEEEee--CCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC----CCeEEEEeCCCcEEEEeCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD----GRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~l~s~~~dg~v~iwd~~~ 140 (452)
-+|..++|.... +.++|.- .+|.+++=| ...+..|. -|..+.|.|- ...|++......|.||.+..
T Consensus 20 HPvhGlaWTDGk-qVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGK-QVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCC-EEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 367788887543 5555543 344443322 23344443 5899999983 33455666778999999853
Q ss_pred CCCCCCCCCCCCCCCCeeEEEe----cCCeeeeeecCCCCeEEEeCC-eEE-EEeCCC--CCcceecccCCCceEEEEEC
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVW----KNSFWAVDHQWEGDLFATAGA-QVD-IWNHNR--SQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~i~-i~d~~~--~~~~~~~~~~~~~i~~~~~~ 212 (452)
.......- -....... .---..+.|+|...+++.-.+ ++. ++++.. ......+ ...+.|.|.+|.
T Consensus 92 s~~e~~K~------l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 92 STTERNKL------LMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred Cccccccc------eeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence 22111000 00011111 111235678998888877663 443 334332 2222333 346889999999
Q ss_pred CCCCcEEEEEecCCeEEEEEcc
Q 012994 213 PAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
++|.+++++.+..=.-++||-.
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCc
Confidence 9998887777777778899843
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.59 E-value=0.78 Score=42.83 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=47.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe-eCCCcEEEeeccc
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG-SDDTNLRLWKAKA 363 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~ 363 (452)
..+.|+|....|+.=.....-.++++..............+.|.|.+|.+||+.|+.+ +..=.-+|||-..
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3467999888777666555445677765554444433444789999999999987654 3333457887543
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.55 E-value=0.89 Score=36.80 Aligned_cols=112 Identities=15% Similarity=0.245 Sum_probs=65.0
Q ss_pred ceEEEeeCCCcEEEEeCC--CCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---C---cEEEE-eCCCC----CCCC-
Q 012994 80 KGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---C---TVKLW-NVPVA----TLTD- 145 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g---~v~iw-d~~~~----~~~~- 145 (452)
..|+.+...+.|.+|++. ..+.+..+.. -+.|..+.++..|++|+|--.+ . .+++| |.+.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444566789999988 3355667764 3789999999999999997432 2 55665 22111 1110
Q ss_pred ---------CCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeCCeEEEEeCCC
Q 012994 146 ---------SDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGAQVDIWNHNR 192 (452)
Q Consensus 146 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~i~d~~~ 192 (452)
...........+...+......+++..| .|++++..++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 0000000011122223344556666555 6777877788888887653
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.44 E-value=0.57 Score=46.22 Aligned_cols=35 Identities=14% Similarity=0.336 Sum_probs=26.9
Q ss_pred CcccceEEEEEcCC---CCEEEEEeCCCeEEEEECCCC
Q 012994 287 GHESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 287 ~~~~~v~~~~~s~~---g~~l~s~~~dg~i~iwd~~~~ 321 (452)
.+...|..+.|+|. +..|+.=+.|+.+++||+...
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 34457888999985 467888888999999998753
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.42 E-value=0.68 Score=44.95 Aligned_cols=164 Identities=13% Similarity=0.241 Sum_probs=97.0
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE------Eee----------------cCCCCeeEEEEcc--C
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC------QYS----------------GHQGAVRGLTVST--D 120 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~------~~~----------------~h~~~v~~l~~~~--~ 120 (452)
-.+..+++.= . ++++++. .+.|.||++....... .+. .-...|+.|.... +
T Consensus 39 fKNNLtalsq---~-n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~ 113 (717)
T PF08728_consen 39 FKNNLTALSQ---R-NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGG 113 (717)
T ss_pred cccceeEEec---C-CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCC
Confidence 3445555543 3 6666655 6799999976432211 110 0112466665544 4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCC-----CCCCCC--CCCCCCCCeeEEEecCCeeeeeec--CCCCeEEEeCC--eEEEE-
Q 012994 121 GRILVSCGTDCTVKLWNVPVAT-----LTDSDD--STDNSSEPLAVYVWKNSFWAVDHQ--WEGDLFATAGA--QVDIW- 188 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~i~i~- 188 (452)
...|+.|..||.|.+|.++.-. ...... .......+.........++.++++ ...+++|++++ .|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa 193 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA 193 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence 5689999999999999763210 000000 001223455556667789999998 88888888874 35554
Q ss_pred -eCCCCCc-ceecccCCCceEEEEECCCC--Cc---EEEEEecCCeEEEEEc
Q 012994 189 -NHNRSQP-INSFQWGTDTVISVRFNPAE--PN---VLATTASDRSITLYDL 233 (452)
Q Consensus 189 -d~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i~i~d~ 233 (452)
.....+. ...-..+...|.++.|.++. +. .+++++-.|.+.+|++
T Consensus 194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 4432221 11111256678889988754 22 6778889999999888
No 422
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.40 E-value=3.5 Score=41.70 Aligned_cols=112 Identities=14% Similarity=0.163 Sum_probs=69.9
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
..+..+++|+|.....||+....|...|||+........- ..-+.....|.| ++|..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~----------------~~~~~~~~~gsi-~~d~~------ 201 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSS----------------NLRLSRNISGSI-IFDPE------ 201 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCc----------------ceeeccCCCccc-cCCCc------
Confidence 4577889999988889999999999999999222111100 001111112222 22221
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee-eeccCCcCcEEEEEEcCC
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE-IYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~s~~ 343 (452)
..+.-..+.|.++-+.|+.++. ..+.++|+.+..... .........|..+.-+|+
T Consensus 202 -----e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 202 -----ELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred -----ccCcceeeEecCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 1144557889888778887764 458899998876644 333334467888877776
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.38 E-value=0.075 Score=30.21 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=27.0
Q ss_pred ccEEEEEeCCCCc--ceEEEeeCCCcEEEEeCCC
Q 012994 67 DGISCMAKNPNYL--KGFFSGSMDGDIRLWDIAN 98 (452)
Q Consensus 67 ~~V~~~~~~~~~~--~~l~tg~~dg~i~iwd~~~ 98 (452)
++|.++.|+|... .+|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999998753 5888888889999999985
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.36 E-value=0.12 Score=29.46 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=27.4
Q ss_pred CceEEEEECCCCC--cEEEEEecCCeEEEEEccC
Q 012994 204 DTVISVRFNPAEP--NVLATTASDRSITLYDLRM 235 (452)
Q Consensus 204 ~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 235 (452)
+.+.++.|+|... .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998665 7898888899999999985
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.35 E-value=1.7 Score=37.86 Aligned_cols=155 Identities=11% Similarity=0.115 Sum_probs=80.0
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
-.+.+..+..+++| .++++++.-....-||.....-...-..-...|..|.|.|++.+.+. ...|.|+.=+.......
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCccc
Confidence 45778888999998 88887765555567874322122222335678999999999876554 47888888762111000
Q ss_pred CCCCCCCCCCCCee-EEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc---cCCCceEEEEECCCCCcEEE
Q 012994 145 DSDDSTDNSSEPLA-VYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 145 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~ 220 (452)
-. .+.. .....-.+..+++.+++.+.+++++...+...+.++.-+... .-...++.+.|.+.+ . -.
T Consensus 221 w~--------~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~-~-gf 290 (302)
T PF14870_consen 221 WS--------EPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD-K-GF 290 (302)
T ss_dssp E-----------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETT-E-EE
T ss_pred cc--------cccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCC-c-eE
Confidence 00 0000 001122467889999999999888766667777666544433 234567788887543 3 34
Q ss_pred EEecCCeEEEE
Q 012994 221 TTASDRSITLY 231 (452)
Q Consensus 221 ~~~~dg~i~i~ 231 (452)
+.+.+|.|.-|
T Consensus 291 ~lG~~G~ll~~ 301 (302)
T PF14870_consen 291 VLGQDGVLLRY 301 (302)
T ss_dssp EE-STTEEEEE
T ss_pred EECCCcEEEEe
Confidence 55678887655
No 426
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.5 Score=37.03 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=121.7
Q ss_pred CceEEEEECCCCCcEEEEEecCCe-EEEEEccCCCCceEEEeeccc---ceEEEccCCCceEEeec----CCCeEEEEeC
Q 012994 204 DTVISVRFNPAEPNVLATTASDRS-ITLYDLRMSSPARKVIMRTKS---NSISWNPMEPMNFTAAN----EDCNCYSYDS 275 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~i~~~d~ 275 (452)
..-..++++|..+.-++.+-.-|+ ..++|....+....+.....- ..-.|+|++..++++-+ ..|.|-+||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 344568888887777777777666 568899888777666543322 34578999999888754 3578999999
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEeC------------------CCeEEEEECCCCceeeeecc---CCcCc
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY------------------DRTIRIFQYNGGRSREIYHT---KRMQR 334 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~---~~~~~ 334 (452)
+..-...-.+..|.-....+.|.+||+.|+.+.. .-.+.+.|..+|..+..... .+.-.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 8655555555677777788999999999887642 11233444444544433211 22356
Q ss_pred EEEEEEcCCCCEEEEeeC-----CCcEEEeecccccccccCChhhhhhhHHHHHHHHhhcc
Q 012994 335 VFCVKFSCDASYVISGSD-----DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKH 390 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (452)
|..++..+||..++.+-. |---.+=....++.+..+...+++...+..+......+
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 888999999887665432 22233334456777888877777777666555544433
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=95.18 E-value=0.78 Score=43.45 Aligned_cols=171 Identities=6% Similarity=-0.081 Sum_probs=76.4
Q ss_pred eEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecC--CeEEEEEccCCCCceEEEeecccceEEEccCCCc
Q 012994 184 QVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASD--RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM 259 (452)
Q Consensus 184 ~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (452)
.+..||..+++... .+.........+.. ++ .+.++||.+ ..+..||..++.-...-.........+...-++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~-~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPA--NN-KLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNV 364 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEE--CC-EEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCE
Confidence 36678877654322 22211111122222 23 677788764 3577788654421111111111112222223445
Q ss_pred eEEeecCC---CeEEEEeCCCcccc-ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC-cCc
Q 012994 260 NFTAANED---CNCYSYDSRKLDEA-KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-MQR 334 (452)
Q Consensus 260 ~~~~~~~~---~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~ 334 (452)
+++.|+.+ ..+..||..+..=. ........... ++ ..-+|++.+.|+ .+.+||..+++-........ ...
T Consensus 365 IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~ 439 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDN 439 (480)
T ss_pred EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCccc
Confidence 56666543 34567776542100 00000001111 11 123566666664 46789988765433322111 112
Q ss_pred EEEEEEcCCCCEEEEeeCC-----CcEEEeecccc
Q 012994 335 VFCVKFSCDASYVISGSDD-----TNLRLWKAKAS 364 (452)
Q Consensus 335 v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 364 (452)
...+.+ +|++.+.||.+ ..+..||..++
T Consensus 440 ~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 440 PELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 222222 67777778754 34666766554
No 428
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.15 E-value=1.8 Score=36.93 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=85.7
Q ss_pred CeeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC--eEEE
Q 012994 111 AVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA--QVDI 187 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~i 187 (452)
.+.+.+++++++.++... .++.-.||-...+.. .........+..-.|++++.+.+...+ ...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-------------~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-------------VRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-------------ceeeccCCccccccccCCCCEEEEEcCCCceEE
Confidence 688999999999777665 233334443333211 111113335666778888887777653 3444
Q ss_pred E-eCCCCCcc-eecccC--CCceEEEEECCCCCcEEEEEe--cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceE
Q 012994 188 W-NHNRSQPI-NSFQWG--TDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 188 ~-d~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
+ +...+... ...... ...|..+.++|+|.++.+... .++.|.+--+.....-...
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~------------------- 152 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR------------------- 152 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc-------------------
Confidence 4 22232221 111111 128999999999966655553 2455555544221111000
Q ss_pred EeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCe-EEE-EECC
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRT-IRI-FQYN 319 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~-i~i-wd~~ 319 (452)
...............++++.|.+++.+++.+...+. +.. ....
T Consensus 153 ---------------~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d 197 (253)
T PF10647_consen 153 ---------------RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD 197 (253)
T ss_pred ---------------eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEcc
Confidence 001111122233467899999999988776665433 433 4443
No 429
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.6 Score=46.97 Aligned_cols=141 Identities=10% Similarity=0.063 Sum_probs=89.7
Q ss_pred CeeeeeecCCCCeEEEeC---C-eEEEEeCCCCCcce-----ec------ccCCCceEEEEECCCCCcEEEEEecCCeEE
Q 012994 165 SFWAVDHQWEGDLFATAG---A-QVDIWNHNRSQPIN-----SF------QWGTDTVISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~---~-~i~i~d~~~~~~~~-----~~------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
.+..+...+|+...++.. | .|..||+.+-..-. .+ ........++.|+|.-+...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 444555566665544432 2 48888886532211 11 112345678899998777788889999999
Q ss_pred EEEccCCCC-ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc--cceeeeCcccceEEEEEcCCCCEEEE
Q 012994 230 LYDLRMSSP-ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE--AKCVHMGHESAVMDIDYSPTGREFVT 306 (452)
Q Consensus 230 i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~s 306 (452)
+..+..... ...+......++++|+|.|.. +++|...|.+..|...-... +...-......|.+++|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQ-l~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQ-LFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccce-eeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988765432 333456667789999999876 77888999998887543211 11111112467999999776666554
No 430
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.96 Score=46.62 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=46.0
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+..++.+..+......+ .+..-+.+-+|+.........+...+.. +++++..++++-.||.+.+||...++.
T Consensus 197 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCCCce
Confidence 34445555554443333 3444666777776655444444333211 188899999999999999999999866
No 431
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.89 E-value=2.4 Score=36.96 Aligned_cols=166 Identities=13% Similarity=0.138 Sum_probs=93.4
Q ss_pred eEEEEeCCCCCcceecccC------CCceEEEEECCCCC-----cEEEEEecCCeEEEEEccCCCCceEEE---------
Q 012994 184 QVDIWNHNRSQPINSFQWG------TDTVISVRFNPAEP-----NVLATTASDRSITLYDLRMSSPARKVI--------- 243 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~--------- 243 (452)
.+.+||+.+++.++.+... .+.+..+.+....+ ...++-+..+-|.++|+.+++.-+.+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5889999999987766542 45677787776332 234444455689999998866433321
Q ss_pred -----------eecccceEEEcc---CCCceEEeecCCCeEEEEeCCCccc-----------cceeeeCc-ccceEEEEE
Q 012994 244 -----------MRTKSNSISWNP---MEPMNFTAANEDCNCYSYDSRKLDE-----------AKCVHMGH-ESAVMDIDY 297 (452)
Q Consensus 244 -----------~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~d~~~~~~-----------~~~~~~~~-~~~v~~~~~ 297 (452)
....+..++.+| +++.++...-....++-....-+.. ....+ +. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 122233444444 3333444443444444443221110 11111 22 135667889
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCC----ceeeeeccCC-cCcEEEEEEcC--CCCEEEEe
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGG----RSREIYHTKR-MQRVFCVKFSC--DASYVISG 350 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~-~~~v~~~~~s~--~~~~l~s~ 350 (452)
+++|.++++--..+.|..|+..+. .......... ...+.++.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999999998888999999999862 2222223333 46789999998 77665544
No 432
>PRK10115 protease 2; Provisional
Probab=94.88 E-value=4.6 Score=40.24 Aligned_cols=192 Identities=6% Similarity=-0.038 Sum_probs=97.1
Q ss_pred eeeeecCCCCeEEEeC---C----eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC-----CeEEEEEcc
Q 012994 167 WAVDHQWEGDLFATAG---A----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDLR 234 (452)
Q Consensus 167 ~~~~~~~~~~~~~~~~---~----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 234 (452)
..+.++|++++++.+- | ++.+.|+.++..+...-... -..++|.+++..++++...+ ..|..+++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 3567789999888763 2 48999998886443222111 14599999886666665433 357777887
Q ss_pred CCCCceEEEee--cc-cceEEEcc-CCCceEEeecC--CCeEEEEeCCCcc-ccceeeeCcccceEEEEEcCCCCEEEEE
Q 012994 235 MSSPARKVIMR--TK-SNSISWNP-MEPMNFTAANE--DCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTG 307 (452)
Q Consensus 235 ~~~~~~~~~~~--~~-~~~~~~~~-~~~~~~~~~~~--~~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 307 (452)
+......+... .. .....+.+ ++..+++.... ++.+.+++..... ...............+. +..+.+++..
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEE
Confidence 77322222222 11 11122333 66665544333 4578888853321 11222222222222222 2233333332
Q ss_pred eC---CCeEEEEECCC-CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 308 SY---DRTIRIFQYNG-GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 308 ~~---dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.. ...|...++.. ++....+.......|..+.++ .+.++++...+|.-+++-+.
T Consensus 287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 22 22344445542 222222222223468888887 34566677777776665543
No 433
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.87 E-value=0.78 Score=41.96 Aligned_cols=148 Identities=10% Similarity=0.144 Sum_probs=91.3
Q ss_pred ECCCCCcEE-EEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCC------ceEEeecCCCeEEEEeCCCccccce
Q 012994 211 FNPAEPNVL-ATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEP------MNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 211 ~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.+.++.+++ ..|+....++-.|+.-++.+.....+..+ .+.+.|... ..-++|-++..|.-.|.+-......
T Consensus 474 lh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 474 LHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred eecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 333333444 44555666777788888877777766665 666776543 2245666777777778775442222
Q ss_pred eeeCcccceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 284 VHMGHESAVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~----~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
.. .....++.-.||. ...++|.|+..|.|++||--.-+.. +...+-...|..+..+.+|.+|++.|.. .+.+-
T Consensus 553 v~-esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-talP~lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 553 VV-ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-TALPGLGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred ee-eehhccccccccccccccCceEEEecCCCceeeehhhcchhh-hcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 21 1122223333333 3458999999999999996543322 2223333679999999999998877754 66676
Q ss_pred ecc
Q 012994 360 KAK 362 (452)
Q Consensus 360 ~~~ 362 (452)
|+.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 653
No 434
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.69 E-value=0.0071 Score=54.08 Aligned_cols=143 Identities=17% Similarity=0.210 Sum_probs=101.0
Q ss_pred eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee
Q 012994 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 285 (452)
.....|.+.+.+ ++.++.+..+..||- .++........+....++|.-+++..++.+...+.+++||..+........
T Consensus 37 pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345677887766 666777888888884 344445555566667888988899989999999999999987644332222
Q ss_pred eC-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 286 MG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 286 ~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
.+ |.... +.|++.+..++.|...|.+.|++..+.+..... +.|...+++++|.+.+..+ .++.|.
T Consensus 115 gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~vi-l~dcd~ 180 (615)
T KOG2247|consen 115 GGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDYVI-LCDCDN 180 (615)
T ss_pred cCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccceee-ecCcHH
Confidence 22 22222 789999999999999999999998776554333 3366789999999877544 344443
No 435
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.68 E-value=2 Score=41.50 Aligned_cols=101 Identities=9% Similarity=0.141 Sum_probs=66.4
Q ss_pred eEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc--CCCCEEEEEeCCCeEEEEECC-----CC----ceeeee-
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS--PTGREFVTGSYDRTIRIFQYN-----GG----RSREIY- 327 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~~-----~~----~~~~~~- 327 (452)
+.++.+....+.+||.+...-.........+.|.++.|. |+|+.+++.+..+.|.+|.-. .. ..+..+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 344455667899999987653222222456789999886 588999999999999998542 11 111111
Q ss_pred -ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 328 -HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 328 -~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
......+|.+..|.++|.+++.+| +.+.|++-.
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 222235799999999998766543 468887743
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.47 E-value=3.1 Score=36.37 Aligned_cols=152 Identities=10% Similarity=0.151 Sum_probs=76.1
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC-CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC-CCcc
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS-RKLD 279 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~~~ 279 (452)
..+.+..+..++++ .+++++.......-||.-... ..........+..+.|.|++...++ ...+.+++-+. ....
T Consensus 143 ~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~--~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 143 TSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML--ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp ----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE--ETTTEEEEEE-TTEEE
T ss_pred CcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE--eCCcEEEEccCCCCcc
Confidence 34678888888888 677666655555677643221 2222223556778899998655443 37788877762 2211
Q ss_pred ccce---eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc--CCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 280 EAKC---VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 280 ~~~~---~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
.-.. ......-.+.+++|.+++...++|+ .|.+ +.....|+.-..... .-...+..+.|.++.+-++ -+.+|
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G 296 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDG 296 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STT
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCc
Confidence 1111 1111223478999999887777665 5544 456666765444432 2235688999976655444 56688
Q ss_pred cEEEe
Q 012994 355 NLRLW 359 (452)
Q Consensus 355 ~i~iw 359 (452)
.|.-|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87655
No 437
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.42 E-value=0.42 Score=39.58 Aligned_cols=68 Identities=4% Similarity=0.079 Sum_probs=50.6
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeee-------cc------CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIY-------HT------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+..++++|++-+.+|.+++||+.+++..... .. .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999987654322 11 2346789999998988777655 57889998764
Q ss_pred cc
Q 012994 364 SE 365 (452)
Q Consensus 364 ~~ 365 (452)
+.
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=94.23 E-value=3.8 Score=38.92 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=31.8
Q ss_pred ceEEEeeCCC-----cEEEEeCCCCceEE--EeecCCCCeeEEEEccCCCeEEEEeCC--CcEEEEeCCCC
Q 012994 80 KGFFSGSMDG-----DIRLWDIANRRTVC--QYSGHQGAVRGLTVSTDGRILVSCGTD--CTVKLWNVPVA 141 (452)
Q Consensus 80 ~~l~tg~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~l~s~~~d--g~v~iwd~~~~ 141 (452)
.++++||.++ .+..||..+.+-.. .+....... +++ .-++...+.||.+ .++..||..++
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC
Confidence 5667777643 46678877654322 121111111 222 2356677777754 35777876544
No 439
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.09 E-value=4.5 Score=36.83 Aligned_cols=138 Identities=9% Similarity=0.077 Sum_probs=70.5
Q ss_pred CeeEEEEccCCCeEEEEe-----------CCC-cEEEEeCCCCCCCCCCCCCCCCCCCeeEE-EecCCeeeeeecCCCCe
Q 012994 111 AVRGLTVSTDGRILVSCG-----------TDC-TVKLWNVPVATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDL 177 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~-----------~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 177 (452)
....|+|.++|+++++-. ..+ .|.+++-..+.-. ......+ ........+++.+++ +
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~---------~d~~~vfa~~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK---------YDKSNVFAEELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC---------cceeEEeecCCCCccceeEecCC-E
Confidence 456788988888766642 122 5666654332100 0111111 122344678888888 7
Q ss_pred EEEeCCeEEEE-eCCCC-----Cc---ceeccc----CCCceEEEEECCCCCcEEEEEecC-------------------
Q 012994 178 FATAGAQVDIW-NHNRS-----QP---INSFQW----GTDTVISVRFNPAEPNVLATTASD------------------- 225 (452)
Q Consensus 178 ~~~~~~~i~i~-d~~~~-----~~---~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d------------------- 225 (452)
+++....|..+ |.... +. +..+.. +......++|.|++ .+.++.+..
T Consensus 85 yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 85 YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccC
Confidence 77666666655 43221 11 112222 13447789999988 555544421
Q ss_pred CeEEEEEccCCCCceEEEe-ecccceEEEccCCCce
Q 012994 226 RSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMN 260 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 260 (452)
|.|.-+|...... ..+.. ......++|++.+..+
T Consensus 164 g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 164 GGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ceEEEEecCCCeE-EEEecCcCCCccceECCCCCEE
Confidence 3455555444332 12221 2234578898876553
No 440
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=5.1 Score=38.85 Aligned_cols=180 Identities=11% Similarity=0.068 Sum_probs=91.7
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceE-E---EeecccceEEEccCCCc
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK-V---IMRTKSNSISWNPMEPM 259 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~---~~~~~~~~~~~~~~~~~ 259 (452)
.|.||++ +|..+..+......+..+.|+.+. -|++...+|++.+|++-....... . .....+..+.+..+|
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 4777776 456666666656689999999765 577888999999999754322211 1 011112222222222
Q ss_pred eEEeecCCCeEEEEeCCCccccceee--eCcccceEEEEEcCCCC---EEEEEe-CCCeEEEEECCCCce-eeeeccCCc
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVH--MGHESAVMDIDYSPTGR---EFVTGS-YDRTIRIFQYNGGRS-REIYHTKRM 332 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~s~~g~---~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 332 (452)
+++-..+|.+.+..-.......... .....+-+|-...+++. .++-.. ..| ..++-...... ...+...+
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~- 216 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN- 216 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC-
Confidence 3333344444433322111110000 01111112222222211 111111 111 11222222111 11122222
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+.+..+..||+.++|+--..+|.|.+-..+..+.+..++
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 568889999999999999999999999998888887776
No 441
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.96 E-value=5 Score=36.88 Aligned_cols=193 Identities=8% Similarity=-0.000 Sum_probs=98.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCC----------
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS---------- 149 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------- 149 (452)
.+++.=+.||.+.+++-+.....+.+.+ ----..+.|.+..+.|++++.+..+.-|....-........
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~ 224 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDIS 224 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhcccccccccccccccc
Confidence 5677788999999999665443444433 22233467888888899999988898887632211111000
Q ss_pred CCCCCCCeeEEEecCCeeeee---ec-CCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEE-E------CCCCCcE
Q 012994 150 TDNSSEPLAVYVWKNSFWAVD---HQ-WEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR-F------NPAEPNV 218 (452)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~------~~~~~~~ 218 (452)
......+...+.....+..+. ++ ....+++.+...+.+.+.. |......+. .....|++ + .+.....
T Consensus 225 ~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~ 302 (418)
T PF14727_consen 225 SGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLN 302 (418)
T ss_pred ccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceE
Confidence 111122223333333333333 22 3344566666777777764 443333222 22222222 1 2222235
Q ss_pred EEEEecCCeEEEEEccCCCCceEEEeecccceE--EEccCCCceEEeecCCCeEEEEeCCC
Q 012994 219 LATTASDRSITLYDLRMSSPARKVIMRTKSNSI--SWNPMEPMNFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~ 277 (452)
+++++.++++.||.= .+..........+.++ +..++-+.++++-+.+|.+.+--+.+
T Consensus 303 llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 303 LLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 788999999999852 2222222222222222 22223345566666666666554443
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=1.2 Score=40.17 Aligned_cols=81 Identities=9% Similarity=0.192 Sum_probs=54.6
Q ss_pred ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec---cCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 280 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH---TKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
.+..+.....++|.++.||+|.+.||.--.|..|.+++....+...... ......|....|+.+ .-++..+..| +
T Consensus 57 VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 57 VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-I 134 (657)
T ss_pred CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-e
Confidence 3344444556799999999999999999999999999985544433321 122245889999865 4455554443 5
Q ss_pred EEeecc
Q 012994 357 RLWKAK 362 (452)
Q Consensus 357 ~iw~~~ 362 (452)
-+|...
T Consensus 135 e~y~v~ 140 (657)
T KOG2377|consen 135 EFYQVL 140 (657)
T ss_pred EEEEEc
Confidence 566543
No 443
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.88 E-value=0.061 Score=52.13 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=47.2
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC--CCceEEEe-----ecCCCCeeEEEEcc---CCCeEEEEeCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQY-----SGHQGAVRGLTVST---DGRILVSCGTD 130 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~-----~~h~~~v~~l~~~~---~~~~l~s~~~d 130 (452)
.++|..+.|-.++|.......+. -.-|.+.|||+. .|+....+ ..-...+.-+.|.| +.-++..+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 45788888999988654312222 445778899875 34332222 22233445566665 55667777778
Q ss_pred CcEEEEeCCC
Q 012994 131 CTVKLWNVPV 140 (452)
Q Consensus 131 g~v~iwd~~~ 140 (452)
+.+++...++
T Consensus 205 ~~i~lL~~~r 214 (1283)
T KOG1916|consen 205 GEIRLLNINR 214 (1283)
T ss_pred CceeEeeech
Confidence 8888877644
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.70 E-value=0.014 Score=52.31 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=96.1
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~ 144 (452)
-..-....|-|.+ .-++.++.+..+..||- .++...... .++....++|..++..++ .+-..+.+.+||+.+....
T Consensus 34 lv~pi~~~w~~e~-~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 34 LVGPIIHRWRPEG-HNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred ccccceeeEecCC-CceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3334455677877 44888888889999994 455544444 455677889988777554 4456789999999754221
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
.. +. .....-.-+.|++.+..++.+. +.+.|++..+...+...-.|...++++++.+.+ +.+.+
T Consensus 111 qL-E~-----------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd--~vil~ 176 (615)
T KOG2247|consen 111 QL-ES-----------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED--YVILC 176 (615)
T ss_pred HH-hc-----------cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc--eeeec
Confidence 11 00 0011111245566666555554 679999988877776666688899999999965 45666
Q ss_pred ecCCeEEEE
Q 012994 223 ASDRSITLY 231 (452)
Q Consensus 223 ~~dg~i~i~ 231 (452)
+.|..+.+-
T Consensus 177 dcd~~L~v~ 185 (615)
T KOG2247|consen 177 DCDNTLSVT 185 (615)
T ss_pred CcHHHHHHh
Confidence 666554433
No 445
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.65 E-value=4 Score=39.98 Aligned_cols=74 Identities=15% Similarity=0.195 Sum_probs=52.0
Q ss_pred ccceEEEEEc--CCCCEEEEEeCCCeEEEEECCCC--ceeeeeccCCcCcEEEEEEcCCC---C---EEEEeeCCCcEEE
Q 012994 289 ESAVMDIDYS--PTGREFVTGSYDRTIRIFQYNGG--RSREIYHTKRMQRVFCVKFSCDA---S---YVISGSDDTNLRL 358 (452)
Q Consensus 289 ~~~v~~~~~s--~~g~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~i 358 (452)
...+++++++ ...++||+++....|.||-+... +........+...|-+|+|-++. . +|++++-.|.+.+
T Consensus 163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 3478899998 78889999988888888866542 21111111233568899997743 2 7888888999999
Q ss_pred eecc
Q 012994 359 WKAK 362 (452)
Q Consensus 359 w~~~ 362 (452)
|++.
T Consensus 243 ~~I~ 246 (717)
T PF08728_consen 243 FKIK 246 (717)
T ss_pred EEEE
Confidence 8883
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.39 E-value=3.2 Score=38.32 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=51.8
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 284 (452)
.|..+..++.| ..++-.|.+|.+.++=.+....-..+..+.....+...+-+..++ .
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f----------------------t 161 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF----------------------T 161 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee----------------------c
Confidence 46677888888 566667778876665433322222222111111111111111100 0
Q ss_pred eeCcccceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCcee
Q 012994 285 HMGHESAVMDIDYSPTG---REFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g---~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
....-.+..++|+|+. ..|..-+.|..|++||+.....+
T Consensus 162 -ss~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 162 -SSTSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred -cCCceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 0122346678899965 46666777999999999865544
No 447
>PRK13684 Ycf48-like protein; Provisional
Probab=93.25 E-value=5.9 Score=35.48 Aligned_cols=150 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.+.+.++.+.|++ .++++|..-.....+|-....-......-...++++.+.++++.++.+.. |.+.+=..+.+
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G---- 245 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDL---- 245 (334)
T ss_pred cceEEEEEECCCC-eEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCC----
Q ss_pred CCCCCCCCCCCeeEEEec-----CCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCc---eEEEEECCCCCc
Q 012994 146 SDDSTDNSSEPLAVYVWK-----NSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDT---VISVRFNPAEPN 217 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~---i~~~~~~~~~~~ 217 (452)
..-...... ..+..+.+.+++.+++++..-..+...+.++.-......... ...+.+..++.
T Consensus 246 ---------~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~- 315 (334)
T PRK13684 246 ---------ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK- 315 (334)
T ss_pred ---------CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCc-
Q ss_pred EEEEEecCCeEEEEE
Q 012994 218 VLATTASDRSITLYD 232 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d 232 (452)
.+..+..|.|.-|+
T Consensus 316 -~~~~G~~G~il~~~ 329 (334)
T PRK13684 316 -GFVLGQRGVLLRYV 329 (334)
T ss_pred -eEEECCCceEEEec
No 448
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.16 E-value=3.6 Score=38.37 Aligned_cols=31 Identities=10% Similarity=0.292 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
..|..++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.99 E-value=4.2 Score=33.06 Aligned_cols=107 Identities=19% Similarity=0.300 Sum_probs=63.1
Q ss_pred CCceEEeecCCCeEEEEeCCCcc-ccceeeeCcccceEEEEEcCCCCEEEEEeCC------CeEEEE---ECC--CCce-
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLD-EAKCVHMGHESAVMDIDYSPTGREFVTGSYD------RTIRIF---QYN--GGRS- 323 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d------g~i~iw---d~~--~~~~- 323 (452)
++..+..+.....|..|++.... .....+ ..-+.|..+.++..|+||+|-=.+ ..+|+| +.. ....
T Consensus 27 g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 27 GPDALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred CCceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 42334444777789999988433 333333 445789999999999999985322 256664 222 1111
Q ss_pred --------------------eeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeecccccc
Q 012994 324 --------------------REIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 324 --------------------~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+.....+-..++.+++..| .|+ |+.|+ ++.+.+|.+.....
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEE
Confidence 1111112224677888887 455 44455 45899999875543
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=3.4 Score=38.20 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=24.7
Q ss_pred ceEEEEECCCC--CcEEEEEecCCeEEEEEccCCC
Q 012994 205 TVISVRFNPAE--PNVLATTASDRSITLYDLRMSS 237 (452)
Q Consensus 205 ~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~ 237 (452)
.+..++|+|+. ...|..-+.|..|++||+....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 45667888876 5667777889999999976544
No 451
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.62 E-value=0.97 Score=37.46 Aligned_cols=64 Identities=9% Similarity=0.200 Sum_probs=48.4
Q ss_pred CCCcceEEEeeCCCcEEEEeCCCCceEEEe-------e-------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQY-------S-------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 76 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-------~-------~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
..+ .+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|....|+..-+
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 344 77999999999999999988654331 2 3556788999998888777765 578899987544
No 452
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=2.6 Score=43.53 Aligned_cols=171 Identities=12% Similarity=0.215 Sum_probs=103.8
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEc--------cCCCeEEEEeC
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS--------TDGRILVSCGT 129 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--------~~~~~l~s~~~ 129 (452)
++..+. |...-..+-+.|.=.+ +-.+.|+.+.+|+.+++.....+.+-...|..+..- |.=++|+..+.
T Consensus 71 l~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT 147 (1311)
T KOG1900|consen 71 LLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT 147 (1311)
T ss_pred HHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc
Confidence 333343 5555556666665313 334457899999999988778887777777777642 22234444444
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeC----CCC---C---c----
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH----NRS---Q---P---- 195 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~----~~~---~---~---- 195 (452)
--.|.++-+.-.......... ............+.++....+|+++.+|... .+|.+ ..+ + .
T Consensus 148 ~~ei~ilgV~~~~~~~~~~~f---~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt 223 (1311)
T KOG1900|consen 148 PVEIVILGVSFDEFTGELSIF---NTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLT 223 (1311)
T ss_pred cceEEEEEEEeccccCccccc---ccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCc
Confidence 456777655433222111111 1113333445678888889999999987533 44432 111 0 0
Q ss_pred ----------ceecc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 196 ----------INSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 196 ----------~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
+..+. .+.++|..+.+...- +++.+-+..|.|.+||+...
T Consensus 224 ~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 224 KSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccCC
Confidence 11222 356789999998755 78899999999999999763
No 453
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.04 E-value=2.2 Score=39.24 Aligned_cols=141 Identities=14% Similarity=0.114 Sum_probs=84.9
Q ss_pred EEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC--------CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCC
Q 012994 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG--------RILVSCGTDCTVKLWNVPVATLTDSDDSTDNS 153 (452)
Q Consensus 82 l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (452)
+..|+.-..++--|++.|+.+-.+..|..- -+.|.|+. +.|+ |-.+..|.-.|.+.......
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~------- 552 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIK------- 552 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCcee-------
Confidence 345666777888889999999888877665 46777742 2344 33444454445432210000
Q ss_pred CCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEE
Q 012994 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYD 232 (452)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d 232 (452)
.....-+...+.+.+..-..+|.+.+.+. |+|++||--.-.....+.+-...|..+..+.+|..+|++| ...+.+-|
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL~d 630 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLLTD 630 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee--cceEEEEe
Confidence 01111122233444444444554444443 7999999665555555666678899999999997666666 46788888
Q ss_pred cc
Q 012994 233 LR 234 (452)
Q Consensus 233 ~~ 234 (452)
++
T Consensus 631 ~~ 632 (776)
T COG5167 631 VP 632 (776)
T ss_pred cc
Confidence 65
No 454
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=3.9 Score=42.33 Aligned_cols=153 Identities=13% Similarity=0.199 Sum_probs=89.2
Q ss_pred CCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC-C-------CCCcEEEEEecCCeEEEEEccCCCCceEEEe
Q 012994 173 WEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN-P-------AEPNVLATTASDRSITLYDLRMSSPARKVIM 244 (452)
Q Consensus 173 ~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 244 (452)
.=++..++.+..+.+|+.+++.....+.+-...|..+..- | .=.++|+.+ .--.|.++-+........
T Consensus 89 eI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva-T~~ei~ilgV~~~~~~~~--- 164 (1311)
T KOG1900|consen 89 EIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA-TPVEIVILGVSFDEFTGE--- 164 (1311)
T ss_pred hhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec-ccceEEEEEEEeccccCc---
Confidence 3466778889999999999988888777766666665432 2 222233332 233455554322111100
Q ss_pred ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC----C
Q 012994 245 RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN----G 320 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~----~ 320 (452)
...+.++ .........|+++....+|+.+++|- || .+|.+. .
T Consensus 165 -------------~~~f~~~------------------~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~ 210 (1311)
T KOG1900|consen 165 -------------LSIFNTS------------------FKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAED 210 (1311)
T ss_pred -------------ccccccc------------------eeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccC
Confidence 0001100 01112234578888777888777665 44 344331 1
Q ss_pred C---c-e----------------eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 321 G---R-S----------------REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 321 ~---~-~----------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
+ + + +..+...+..+|..++.......+.+-+..|+|.+|++..
T Consensus 211 gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 211 GWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred chhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1 0 0 0111223457899999998888999999999999999976
No 455
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.88 E-value=4.1 Score=30.28 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=73.0
Q ss_pred EEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-----CCCeEEEeC-CeEEEE
Q 012994 115 LTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-----EGDLFATAG-AQVDIW 188 (452)
Q Consensus 115 l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~i~i~ 188 (452)
-.|......|+.++.-|.|.|++.......... ....+..+.....+.+++..+ +...|+.++ ..+..|
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~-----~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGR-----QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCcccccccc-----ccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Confidence 356555567888888899999987654322111 356677778888888886544 345666666 579999
Q ss_pred eCCCCCcceecccCCCceEEEEECC---CCCcEEEEEecCCeEEEEEccCC
Q 012994 189 NHNRSQPINSFQWGTDTVISVRFNP---AEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
|+..+..+..-.. .+.++++.+-. ....++++| .+..|.-||....
T Consensus 79 DV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 79 DVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred EcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 9998876654443 35566665532 222344444 4566777775443
No 456
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.71 E-value=4.8 Score=33.83 Aligned_cols=140 Identities=10% Similarity=0.043 Sum_probs=75.1
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec-C--CeEEEEEccCCCCce-------EEEeecccceEEEc
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-D--RSITLYDLRMSSPAR-------KVIMRTKSNSISWN 254 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~ 254 (452)
-.+||+.+++....-........+-.+.++| +++.+|+. + ..+++++.-...... .+....--.+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 4578888765432222222333444677877 78888775 2 347788764411110 11112222355666
Q ss_pred cCCCceEEeecCCCeEEEEeCCCccc-ccee--ee-----CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 012994 255 PMEPMNFTAANEDCNCYSYDSRKLDE-AKCV--HM-----GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI 326 (452)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~--~~-----~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 326 (452)
|+|+.+++.|........|....... .... +. .....--.+...|+|++++.+..++ .|||..+++.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEee
Confidence 78877666666655666665532211 1111 10 0111222466789999999887654 5678887765444
Q ss_pred e
Q 012994 327 Y 327 (452)
Q Consensus 327 ~ 327 (452)
+
T Consensus 205 l 205 (243)
T PF07250_consen 205 L 205 (243)
T ss_pred C
Confidence 3
No 457
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.70 E-value=0.84 Score=41.08 Aligned_cols=239 Identities=10% Similarity=0.049 Sum_probs=119.7
Q ss_pred CcceEEEeeCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEccCC--------CeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 78 YLKGFFSGSMDGDIRLWDIANRR----TVCQYSGHQGAVRGLTVSTDG--------RILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 78 ~~~~l~tg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~--------~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
|...++.|..||.+.+....-.. +-..+... -.-++..+.| ++.+..+.+....++|........
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g---~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L 202 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPG---LEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQIL 202 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCC---CCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhh
Confidence 44788899999999888643110 11111110 1111222222 233444555555555543322211
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEeCCCCCcce-ec-ccCCC----ceE-EEEECCCCCc
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWNHNRSQPIN-SF-QWGTD----TVI-SVRFNPAEPN 217 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d~~~~~~~~-~~-~~~~~----~i~-~~~~~~~~~~ 217 (452)
....................+..+-..|+|+.+..-+| ++.++++.+..... .+ ....+ .|+ .+.... |+.
T Consensus 203 ~g~~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~ 281 (733)
T COG4590 203 RGDRTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGF 281 (733)
T ss_pred hcccCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-Cce
Confidence 11111111111112233456667788999998887765 68888876643221 11 11111 111 111122 335
Q ss_pred EEEEEecCCeEEEE-EccCCCC-----ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 218 VLATTASDRSITLY-DLRMSSP-----ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 218 ~l~~~~~dg~i~i~-d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
-+++++.||-|.-| |.+.... ++.+........+-...+....++.-..+|.+..+........ ....-...
T Consensus 282 SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~~~~~ 359 (733)
T COG4590 282 SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFERAYQA 359 (733)
T ss_pred eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhhhhcC
Confidence 57788889988877 5544332 1111111111222222334455677777777776654432222 11122235
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
+.-+++||.+.+|++-. .|.++++.+++..+
T Consensus 360 ~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 360 PQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred cceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 66789999999998765 56799999886543
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.62 E-value=0.14 Score=49.78 Aligned_cols=69 Identities=22% Similarity=0.313 Sum_probs=46.5
Q ss_pred EEEEEeCC---CCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEE-----------ccCCCeEEEEeCCCcEE
Q 012994 69 ISCMAKNP---NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV-----------STDGRILVSCGTDCTVK 134 (452)
Q Consensus 69 V~~~~~~~---~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~-----------~~~~~~l~s~~~dg~v~ 134 (452)
+.-+.|.| .. -++..+-.++.|++.++++... ..+.+|...++.++| +|||+.++.++.||.++
T Consensus 183 ~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred cceeeeccccccc-ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 34444444 44 6677788888998877654432 334568777766654 67888888888888888
Q ss_pred EEeCC
Q 012994 135 LWNVP 139 (452)
Q Consensus 135 iwd~~ 139 (452)
.|.+.
T Consensus 261 f~Qiy 265 (1283)
T KOG1916|consen 261 FYQIY 265 (1283)
T ss_pred eeeee
Confidence 87763
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.52 E-value=0.84 Score=25.85 Aligned_cols=40 Identities=8% Similarity=0.183 Sum_probs=27.6
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEE
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSIS 252 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 252 (452)
|++..++++...++.|.++|..+......+........+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4555566667678999999998887777766544444443
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.34 E-value=2.1 Score=33.99 Aligned_cols=72 Identities=24% Similarity=0.363 Sum_probs=49.7
Q ss_pred CeeeeeecCCCCeEEEeCCeEEEEeCCCCC--------------------cceeccc---------------------CC
Q 012994 165 SFWAVDHQWEGDLFATAGAQVDIWNHNRSQ--------------------PINSFQW---------------------GT 203 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~--------------------~~~~~~~---------------------~~ 203 (452)
...+++||.||.+.++.+..|.|.+..... ....+.. ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 346799999999999999999999332211 0000000 01
Q ss_pred CceEEEEECCCC-----CcEEEEEecCCeEEEEEccCC
Q 012994 204 DTVISVRFNPAE-----PNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 204 ~~i~~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~ 236 (452)
..+..++|+|.| .-+|++...+|.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 278899999953 457899999999999986543
No 461
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=7 Score=35.62 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=74.9
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEE
Q 012994 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVD 186 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 186 (452)
...++|.++.|++|.+.||.--.|++|.+++......... ...........+..+.|+.+..+....+..+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~--------~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e 135 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE--------YTQECKTKNANILGFCWTSSTEIAFITDQGIE 135 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH--------HHHHhccCcceeEEEEEecCeeEEEEecCCeE
Confidence 4567999999999999999999999999999843322111 11112222334667777777666555565566
Q ss_pred EEeCCCC-CcceecccCCCceEEEEECCCCCcEEEEEe-cCCeEEEEEccCC
Q 012994 187 IWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMS 236 (452)
Q Consensus 187 i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 236 (452)
+|.+... ..++..+.+.-.|+-..|.++..-.|++.+ ..+.+.=+-++++
T Consensus 136 ~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 136 FYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 6655432 334555556677788888887633333333 3444444444433
No 462
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.08 E-value=3.4 Score=37.84 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=56.5
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeE-EEEccC-----------------
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRG-LTVSTD----------------- 120 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~----------------- 120 (452)
...|......+.++..+|++ ++.|+...=|.|.++|+.++..++.++|-.+.=.. +.....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~-~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSG-RLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred EEeeccCCceEEEEEECCCC-CEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 33455566779999999998 88888888899999999999888777764432111 111000
Q ss_pred CCeE-EEEeCCCcEEEEeCCCCC
Q 012994 121 GRIL-VSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 121 ~~~l-~s~~~dg~v~iwd~~~~~ 142 (452)
..+| +-+-.-|.|-||++..+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCC
Confidence 1122 334567899999998773
No 463
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=91.08 E-value=1.8 Score=42.00 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=54.3
Q ss_pred eEEEEccCCCeEEEEeCCC-----cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEE
Q 012994 113 RGLTVSTDGRILVSCGTDC-----TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVD 186 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 186 (452)
..+.|-|.|..++|-+.|| .|.++.-+.-+- +..-........+...+|+-....++.+. +.+.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH----------Gef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~ 319 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH----------GEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLK 319 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCccc----------CCccccCCchhhhhhhhhhHHHHHHHHhhcceEE
Confidence 4478999999999987665 244443321110 11111111222334455555555555554 4688
Q ss_pred EEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
+|-...-...-.....-..+.-+.|+|...+.++..+
T Consensus 320 lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 320 LWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred EEEccceEEEEEEeecCCCcceeeeccccCcEEEEec
Confidence 8877665443333333445666788887655554443
No 464
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.99 E-value=8.9 Score=32.50 Aligned_cols=231 Identities=10% Similarity=0.070 Sum_probs=129.7
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-eEEEEe
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA-QVDIWN 189 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~i~d 189 (452)
.-..++-.|||..-+++...|.|--.|..+++... ..+.....-..+...|+|...++.++ -|.-.|
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~------------ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~d 130 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET------------YPLGSGASPHGIVVGPDGSAWITDTGLAIGRLD 130 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEE------------EecCCCCCCceEEECCCCCeeEecCcceeEEec
Confidence 44567777888777777777777777776664321 11222233445667788888877776 455555
Q ss_pred CCCCCcce-e--cccCCCceEEEEECCCCCcEEEEEecC---------CeEEEEEccCCCCceEEEeecccceEEEccCC
Q 012994 190 HNRSQPIN-S--FQWGTDTVISVRFNPAEPNVLATTASD---------RSITLYDLRMSSPARKVIMRTKSNSISWNPME 257 (452)
Q Consensus 190 ~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (452)
-++.+... . ............|.+.+ ++.+++... +.|++|+.. .......++..|++
T Consensus 131 pkt~evt~f~lp~~~a~~nlet~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaP---------qG~gpyGi~atpdG 200 (353)
T COG4257 131 PKTLEVTRFPLPLEHADANLETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAP---------QGGGPYGICATPDG 200 (353)
T ss_pred CcccceEEeecccccCCCcccceeeCCCc-cEEEeeccccceecCcccCceeeeccC---------CCCCCcceEECCCC
Confidence 54443211 1 12234566778888887 777777531 234444432 23345677778887
Q ss_pred CceEEeecCCCeEEEEeCCCccccce-eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEE
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKC-VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
...++. -.+..|-..|......... .-.........+--+|.|+.-++-...+.+.-||-....-...-.......-.
T Consensus 201 svwyas-lagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpy 279 (353)
T COG4257 201 SVWYAS-LAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPY 279 (353)
T ss_pred cEEEEe-ccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcc
Confidence 764443 3334444444433211111 11121233445556778888888777888888887765533322233334556
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 337 CVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
++.....++.-++--..|.|.-+|-++.
T Consensus 280 s~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 280 SMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred eeeeccCCcEEeeccccCceeecCcccc
Confidence 6666666666555455566766666553
No 465
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.68 E-value=14 Score=34.39 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=25.2
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999975
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.61 E-value=7.9 Score=34.54 Aligned_cols=95 Identities=9% Similarity=0.111 Sum_probs=44.5
Q ss_pred CCceEEeecC-----CCeEEEEeCCCcc--ccceeeeCcccceEEEEEcCCCCEEEEEeCCC----eEEEEECCCCceee
Q 012994 257 EPMNFTAANE-----DCNCYSYDSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSYDR----TIRIFQYNGGRSRE 325 (452)
Q Consensus 257 ~~~~~~~~~~-----~~~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg----~i~iwd~~~~~~~~ 325 (452)
+..+++.|+. ...+..||..+.. .... +.. .......+...++++.+.|+.++ .+.+||..+.+-..
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~ 200 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPD-FPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQK 200 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCC-CCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEE
Confidence 3445555553 2467888876432 1110 111 01111122233667777777654 35688888765432
Q ss_pred eeccCC-cCc-----EEEEEEcCCCCEEEEeeCCC
Q 012994 326 IYHTKR-MQR-----VFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 326 ~~~~~~-~~~-----v~~~~~s~~~~~l~s~~~dg 354 (452)
...... ..+ ...+. ..++++++.|+.++
T Consensus 201 ~~~~~~~~~p~~~~~~~~~~-~~~~~iyv~GG~~~ 234 (323)
T TIGR03548 201 VADPTTDSEPISLLGAASIK-INESLLLCIGGFNK 234 (323)
T ss_pred CCCCCCCCCceeccceeEEE-ECCCEEEEECCcCH
Confidence 221110 011 11122 23567777888764
No 467
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.46 E-value=17 Score=34.88 Aligned_cols=287 Identities=12% Similarity=0.114 Sum_probs=122.8
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--------ceE-EEeecCCCCeeEEEEcc-----CCCeEEEE--eCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--------RTV-CQYSGHQGAVRGLTVST-----DGRILVSC--GTD 130 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--------~~~-~~~~~h~~~v~~l~~~~-----~~~~l~s~--~~d 130 (452)
..-.-++.+|.+ +.++.+..+|.+.|+-+... ... ..+ .....|.+++|.. +...|+.- ...
T Consensus 44 ~~G~~l~vDP~~-R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~ 121 (504)
T PF10433_consen 44 QPGQYLAVDPSG-RCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLAILYVDSQ 121 (504)
T ss_dssp TT--EEEE-TTS-SEEEEEEBTTEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEEEEEEETT
T ss_pred cCCcEEEECCcC-CEEEEEecCCeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEEEEEEEec
Confidence 445678899998 99999999999999998770 111 111 1256788888875 22333332 222
Q ss_pred C--cEEEEe--CCCCCCCCCCCCCCCCCCCe-eEEEecCCeeeeeec-CCCCeEEEeCCeEEEEeCCCC---Ccceeccc
Q 012994 131 C--TVKLWN--VPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQ-WEGDLFATAGAQVDIWNHNRS---QPINSFQW 201 (452)
Q Consensus 131 g--~v~iwd--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~i~d~~~~---~~~~~~~~ 201 (452)
+ .+..++ ...+......... ... .......+..-+... +.+-+++++.+.+.+-+.... .....+..
T Consensus 122 ~~~~~~~y~w~~~~~l~~~~~~~~----~~~~l~~~~~~p~~LIPlp~~~ggllV~~~~~i~y~~~~~~~~~~~~~~~~~ 197 (504)
T PF10433_consen 122 RRTHLVTYEWSLDDGLNHVISKST----LPIRLPNEDELPSFLIPLPNPPGGLLVGGENIIIYKNHLIGSGDYSFLSIPS 197 (504)
T ss_dssp -EEEEEEEE--------EETTTTE----EEE--EEEE-TTEEEEEE-TTT-SEEEEESSEEEEEE------TTEEEEE--
T ss_pred ccceeEEEeeecccccceeeeecc----ccccccccCCCccEEEEcCCCCcEEEEECCEEEEEecccccccccccccccC
Confidence 2 233443 3322111000000 000 001111122222222 344455554444444432221 11111211
Q ss_pred ----CCCceEEEEE------CCCCCcEEEEEecCCeEEEEEccCCCC---ceEEEe-ecccceEEEccCCCceEEeecC-
Q 012994 202 ----GTDTVISVRF------NPAEPNVLATTASDRSITLYDLRMSSP---ARKVIM-RTKSNSISWNPMEPMNFTAANE- 266 (452)
Q Consensus 202 ----~~~~i~~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 266 (452)
...-+.+..+ ...+...++.+..+|.+....+..... +..+.. .....++.+..++..++++|+.
T Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~ 277 (504)
T PF10433_consen 198 PPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEF 277 (504)
T ss_dssp H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESS
T ss_pred CccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEec
Confidence 1233444433 233446788899999999888765442 222222 2344566666666445555554
Q ss_pred -CCeEEEEeCCCccccceeeeCcccceEEEEEcCC---CC-------EEEEEe---CCCeEEEEECCCCce---eeeecc
Q 012994 267 -DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT---GR-------EFVTGS---YDRTIRIFQYNGGRS---REIYHT 329 (452)
Q Consensus 267 -~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~---g~-------~l~s~~---~dg~i~iwd~~~~~~---~~~~~~ 329 (452)
|+.++.+.......... ...-++|.++++-+. +. .|++++ .+|.+++..-.-+-. ......
T Consensus 278 gds~l~~~~~~~l~~~~~--~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l 355 (504)
T PF10433_consen 278 GDSQLLQISLSNLEVLDS--LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSEL 355 (504)
T ss_dssp S-EEEEEEESESEEEEEE--E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEE
T ss_pred CCcEEEEEeCCCcEEEEe--ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCC
Confidence 45555565333222221 134578888888532 11 444443 477888874321111 111111
Q ss_pred CCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeecc
Q 012994 330 KRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 330 ~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 362 (452)
.....++.+.... ++.+|+....+ .-+++.+.
T Consensus 356 ~~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~ 388 (504)
T PF10433_consen 356 PGVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQIS 388 (504)
T ss_dssp STEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES
T ss_pred CCceEEEEeeecCCCceEEEEEcCC-ceEEEEEe
Confidence 1123344444322 24577666554 44566664
No 468
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.40 E-value=16 Score=34.50 Aligned_cols=282 Identities=12% Similarity=0.055 Sum_probs=129.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCC-CCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
...|.++.++-.| .+..|+.|| +..||..+++.+..-.... .+|..+.-+-.| .|..|+.+| |.+.+.+.....
T Consensus 164 d~~V~aLv~D~~g--~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 164 DTPVVALVFDANG--RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred CccceeeeeeccC--cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccc
Confidence 4578888888875 577788777 5577777777665443333 567777666555 467777765 677666542211
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc---cCCCceEEEEECCCCCcEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVLAT 221 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~ 221 (452)
... .......+..+.-..+|.+-+.....+-.+............ .....|.++....++ + +-+
T Consensus 239 n~~-----------~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-s-LWv 305 (671)
T COG3292 239 NWG-----------PMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-S-LWV 305 (671)
T ss_pred ccC-----------CCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCC-C-Eee
Confidence 110 001112233333333444444433333333333332222211 123445666666555 3 456
Q ss_pred EecCCeEEEEEccCCCCceEEEee-cc-cceEEEccCC-CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 222 TASDRSITLYDLRMSSPARKVIMR-TK-SNSISWNPME-PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 222 ~~~dg~i~i~d~~~~~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
+..+|.+++-+.. ......+... +. ....+..|.. ...+-.....+.+.+-+..+..............|+.+++.
T Consensus 306 ~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d 384 (671)
T COG3292 306 GTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLED 384 (671)
T ss_pred eccCceEEEecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhc
Confidence 6666655544322 1111111111 00 0001111100 00011111111122222222111111211222345666666
Q ss_pred CCCCEEEEEeCCCeEEEEECCC-CceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 299 PTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
.+|. +-.|+...-+..|+..+ +...........++|..+.=.|+++ |..|+.+|.++. +.+.++.+..
T Consensus 385 ~~g~-lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ 453 (671)
T COG3292 385 SRGR-LWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNL 453 (671)
T ss_pred cCCc-EEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcc
Confidence 6544 44455543355666655 3333333333446788888899988 666888886654 4444444333
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.28 E-value=1.2 Score=43.19 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCCEEEEEeCCCeEEEEECCC----Cceeeee-c--------------------cCCcCcEEEEEEcC----CCCEEEE
Q 012994 299 PTGREFVTGSYDRTIRIFQYNG----GRSREIY-H--------------------TKRMQRVFCVKFSC----DASYVIS 349 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~----~~~~~~~-~--------------------~~~~~~v~~~~~s~----~~~~l~s 349 (452)
++...++.+..||.+....... +...... . ......+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566788888888888777654 1111110 0 00113456666666 7789999
Q ss_pred eeCCCcEEEeecccccccccC
Q 012994 350 GSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 350 ~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.+.|+.+++||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999996554
No 470
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.18 E-value=14 Score=33.37 Aligned_cols=41 Identities=10% Similarity=0.308 Sum_probs=20.2
Q ss_pred eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 312 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
.+.+||..+.+-........ ..-...+..-++++++.|+.+
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~-~~~~~~~~~~~~~iyv~GG~~ 331 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQ-GLAYGVSVSWNNGVLLIGGEN 331 (346)
T ss_pred EeeEEEecCCcccccCCCCC-CceeeEEEEcCCEEEEEeccC
Confidence 46788887654322221111 111222333467777777754
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.12 E-value=13 Score=33.10 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=28.7
Q ss_pred cEEEEEec-----CCeEEEEEccCCCCceEEEeec-ccceEEEccCCCceEEeecCCC----eEEEEeCCC
Q 012994 217 NVLATTAS-----DRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDC----NCYSYDSRK 277 (452)
Q Consensus 217 ~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~i~~~d~~~ 277 (452)
.+.+.|+. ...+..||+.+.+=...-.... ..........+..+++.|+.++ .+..||..+
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 66677764 2357788877554221111111 1111111122345566665543 356777664
No 472
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.09 E-value=15 Score=33.72 Aligned_cols=151 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC-----
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV----- 140 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~----- 140 (452)
.+....+..++++ .+++.|..-..++-||-....-...-......++.+.|.+++..++++..-+.+.--|-..
T Consensus 238 ~Gsf~~v~~~~dG-~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 238 TGTFSTVNRSPDG-DYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred ccceeeEEEcCCC-CEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCccccc
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc---cCCCceEEEEECCCCCc
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ---WGTDTVISVRFNPAEPN 217 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 217 (452)
. -...........+..+.+.+++..++++.+-+.+.....++.-.... .-....+.+.|.+++.
T Consensus 317 ~------------f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~- 383 (398)
T PLN00033 317 D------------FEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK- 383 (398)
T ss_pred c------------eeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-
Q ss_pred EEEEEecCCeEEEE
Q 012994 218 VLATTASDRSITLY 231 (452)
Q Consensus 218 ~l~~~~~dg~i~i~ 231 (452)
..+.+.+|.|.-|
T Consensus 384 -g~~~G~~G~il~~ 396 (398)
T PLN00033 384 -GFVLGNDGVLLRY 396 (398)
T ss_pred -eEEEeCCcEEEEe
No 473
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.52 E-value=3.1 Score=28.57 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred EEEEEcCC-CCEEEE-----------------EeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 293 MDIDYSPT-GREFVT-----------------GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 293 ~~~~~s~~-g~~l~s-----------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.++++.++ |...+| +..+|.+.-||..+++.......- .-.+.+++++|+.+|+.+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L--~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGL--YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEE--SSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCC--CccCeEEEcCCCCEEEEE
No 474
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.43 E-value=2.4 Score=23.91 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=26.6
Q ss_pred CCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012994 76 PNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTV 117 (452)
Q Consensus 76 ~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 117 (452)
|++..++++...+++|.++|..+++.+..+... ..-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 456234445556889999999988888777642 33334444
No 475
>PLN02153 epithiospecifier protein
Probab=88.95 E-value=17 Score=32.72 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=13.1
Q ss_pred cEEEEEecC-----CeEEEEEccCC
Q 012994 217 NVLATTASD-----RSITLYDLRMS 236 (452)
Q Consensus 217 ~~l~~~~~d-----g~i~i~d~~~~ 236 (452)
.+++.|+.+ ..+.+||+.+.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCC
Confidence 677777753 24777887654
No 476
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.75 E-value=19 Score=32.98 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
+.+||..+.+-........ ..-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~-~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQ-GLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCC-CccceEEEEeCCEEEEEcCCC
Confidence 4578887765322211111 111112333367777777753
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.68 E-value=31 Score=35.36 Aligned_cols=108 Identities=15% Similarity=0.067 Sum_probs=59.9
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-- 286 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-- 286 (452)
.+..|..+ .+++ +-...+++||+-..+.++......-...+.-.......+++|...-.+.++-.+........+.
T Consensus 939 ~Ai~~f~~-~~La-gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD 1016 (1205)
T KOG1898|consen 939 GAICPFQG-RVLA-GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADD 1016 (1205)
T ss_pred eEEeccCC-EEEE-ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCC
Confidence 34445554 3333 3457899999988777766554443333333333444566666655555554444333333332
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.-...|+++.+- |...+|.+..-|.+.+-.+.
T Consensus 1017 ~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1017 PVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred CccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 223456666554 44567777777777776654
No 478
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.26 E-value=5.6 Score=31.58 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=25.5
Q ss_pred cceEEEEEcCCC------CEEEEEeCCCeEEEEECCC
Q 012994 290 SAVMDIDYSPTG------REFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 290 ~~v~~~~~s~~g------~~l~s~~~dg~i~iwd~~~ 320 (452)
..+.+++|||.| -+|++-+.+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999954 3688889999999998764
No 479
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.96 E-value=18 Score=32.39 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=19.0
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEE
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYD 232 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d 232 (452)
..++|+|.|++ .+++ +...|.|.+++
T Consensus 3 ~P~~~a~~pdG-~l~v-~e~~G~i~~~~ 28 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLV-AERSGRIWVVD 28 (331)
T ss_dssp SEEEEEEETTS-CEEE-EETTTEEEEEE
T ss_pred CceEEEEeCCC-cEEE-EeCCceEEEEe
Confidence 35678888886 5554 45688888888
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.86 E-value=17 Score=31.29 Aligned_cols=195 Identities=10% Similarity=0.058 Sum_probs=100.1
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (452)
-.+.+..+.++. ++...+..+.-++|.|+.+... +......+..-..-.+.-.|++...++ ..+
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~s------------P~~~~~lnt~gyaygv~vsGn~aYVadlddgf 150 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDS------------PTLIGFLNTDGYAYGVYVSGNYAYVADLDDGF 150 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCC------------cceeccccCCceEEEEEecCCEEEEeeccCcE
Confidence 345667777864 4777777888899999977632 222211111112223333445544444 457
Q ss_pred EEEeCCCCCc---ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCCc
Q 012994 186 DIWNHNRSQP---INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEPM 259 (452)
Q Consensus 186 ~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 259 (452)
.++|+.+.+. ..........-..++.+. +....+..|+-+.+.|+.......-+.. .....++..+++ .
T Consensus 151 LivdvsdpssP~lagrya~~~~d~~~v~ISG---n~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdn--r 225 (370)
T COG5276 151 LIVDVSDPSSPQLAGRYALPGGDTHDVAISG---NYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDN--R 225 (370)
T ss_pred EEEECCCCCCceeeeeeccCCCCceeEEEec---CeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCC--e
Confidence 7777765432 223333333335566663 5566777889999999987654433322 223334433333 3
Q ss_pred eEEeecCCCeEEEEeCCCccccceeeeCcccceEEE-EEcCCCCEEEEEeCCCeEEEEECCCCc
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI-DYSPTGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
.+++.... -+.+.|......+...-.-....+.++ .+.-.|++......+.-+.+-|+++..
T Consensus 226 ~y~vvy~e-gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 226 AYLVVYDE-GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred eEEEEccc-ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 33333322 344455554443333222222222222 222245666666666667777776543
No 481
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.81 E-value=34 Score=34.83 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=42.2
Q ss_pred ccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC-CeEEEeCCeEEEEeCCCCCc
Q 012994 118 STDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAGAQVDIWNHNRSQP 195 (452)
Q Consensus 118 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~i~d~~~~~~ 195 (452)
..-|+.|..|+.||.+.+|.+............... ..........++..+...+.- .+++..++.+.++++.+.++
T Consensus 23 a~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~-~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 23 AAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTET-VKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHhCCEEEEEcCCCcEEEEeccccccccchhhhcch-hHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 345778999999999999998765432222110000 001111113444444444433 34445556788888776655
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=87.67 E-value=16 Score=31.00 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=134.2
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
..-..++-.||| ..-+++...|.|---|..+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.....
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~- 138 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR- 138 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-
Confidence 345667778887 778888888888888888888766555555666777788887755543332 33334443332211
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-----------CeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
-++.............|.+.|.+..++. +.+.+|+... ....+.++..|++
T Consensus 139 --------f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdG 200 (353)
T COG4257 139 --------FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDG 200 (353)
T ss_pred --------eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCC
Confidence 1111222345566778888888877764 1255555442 2345678889998
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
.+.++.-.+..|-..|............. .....-.|+.....+-++....+.+..||.....=....+.+....-.
T Consensus 201 -svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpy 279 (353)
T COG4257 201 -SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPY 279 (353)
T ss_pred -cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcc
Confidence 57777777778888887666322211111 112223344444445666667778888876654322222333334445
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
++.....++.-.+--..|.|.-||-++.+
T Consensus 280 s~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 280 SMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred eeeeccCCcEEeeccccCceeecCcccce
Confidence 55555555544443444555556655443
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.45 E-value=22 Score=35.12 Aligned_cols=97 Identities=8% Similarity=0.171 Sum_probs=53.4
Q ss_pred cccceEEEccCCCceEEeecC----CCeEEEEeCCCccccce-eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 246 TKSNSISWNPMEPMNFTAANE----DCNCYSYDSRKLDEAKC-VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+.-..++|-|+|..+...++. ...+.++..+....-.. ...+....+..++|+-....++.+ ..+.+++|-..+
T Consensus 247 g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkN 325 (1243)
T COG5290 247 GMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKN 325 (1243)
T ss_pred cchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccc
Confidence 344568999999876655522 23566666554433221 112334456667777665555544 356799998765
Q ss_pred CceeeeeccCCcCcEEEEEEcCCC
Q 012994 321 GRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 321 ~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
-........ ....+.-+.|+|..
T Consensus 326 yhWYLK~e~-~ip~~s~vkwhpe~ 348 (1243)
T COG5290 326 YHWYLKVER-QIPGISYVKWHPEE 348 (1243)
T ss_pred eEEEEEEee-cCCCcceeeecccc
Confidence 332211111 11346677888843
No 484
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=86.97 E-value=6.9 Score=37.40 Aligned_cols=48 Identities=17% Similarity=0.374 Sum_probs=38.5
Q ss_pred EEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC-cEEEEeC
Q 012994 91 IRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC-TVKLWNV 138 (452)
Q Consensus 91 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg-~v~iwd~ 138 (452)
+.+=|+.+...+..++.|..++..++|.+.+..+++++-.| .|.++.+
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi 345 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI 345 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe
Confidence 56667777777888999999999999999999999988765 3555544
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.83 E-value=14 Score=31.95 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe------CCCcEEEEeCCCCCC
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG------TDCTVKLWNVPVATL 143 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~ 143 (452)
-..|++||..+.+-...-.+-.+.|++|.|..+.++++.|. ....+..||+.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 35699999887665554455667899999987666777664 355788899876644
No 486
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=86.83 E-value=3 Score=23.12 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=20.5
Q ss_pred cccccEEEEEeCCCCcceEEEeeCC--CcEEEE
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMD--GDIRLW 94 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~d--g~i~iw 94 (452)
-..+.-.+..|+|||..+++++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455778899999995555566666 666666
No 487
>PLN02153 epithiospecifier protein
Probab=86.59 E-value=24 Score=31.78 Aligned_cols=24 Identities=4% Similarity=-0.263 Sum_probs=15.7
Q ss_pred CCCEEEEEeCC--------------CeEEEEECCCCce
Q 012994 300 TGREFVTGSYD--------------RTIRIFQYNGGRS 323 (452)
Q Consensus 300 ~g~~l~s~~~d--------------g~i~iwd~~~~~~ 323 (452)
++++++.|+.. ..+..||+.+..-
T Consensus 251 ~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W 288 (341)
T PLN02153 251 GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVW 288 (341)
T ss_pred CCEEEEECcccCCccccccccccccccEEEEEcCccEE
Confidence 56777777742 2577888876543
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.50 E-value=15 Score=31.76 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=66.2
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe------cCCeEEEEEccCCCCceEE-----EeecccceE
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA------SDRSITLYDLRMSSPARKV-----IMRTKSNSI 251 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~ 251 (452)
..+++||....+-...-..-.+.|.++.|..++ .+++.|. ....+..||+.+..-...- ...+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~-~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNN-QLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCC-EEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 358999988876655555557889999998554 6666664 3557888988765421111 123445555
Q ss_pred EEcc-CCCceEEeec---CCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 252 SWNP-MEPMNFTAAN---EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 252 ~~~~-~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
.+.. +...++++|. ....+..||-.+..............|..+.+-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 5543 3334444443 234577777766554443122234455555543
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.68 E-value=4.9 Score=38.99 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=27.2
Q ss_pred ceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeee
Q 012994 291 AVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREI 326 (452)
Q Consensus 291 ~v~~~~~s~----~g~~l~s~~~dg~i~iwd~~~~~~~~~ 326 (452)
.+..+++++ +..+|++-+.|+.+|+||+.++.++..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 455566666 678999999999999999999988443
No 490
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.64 E-value=18 Score=29.40 Aligned_cols=66 Identities=11% Similarity=0.031 Sum_probs=35.9
Q ss_pred ceEEEeeC--CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCCC
Q 012994 80 KGFFSGSM--DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 80 ~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~ 145 (452)
.++.+.+. ...|++||+.+++.+.+-.-....+..=-...-++++. -.-.+|....+|.++.+...
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 55555544 34699999999988766442211222111111122222 23457788888887665443
No 491
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.13 E-value=14 Score=27.62 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=69.3
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccC--------CCCceEEEeecccceEEEcc---CCCceEEeecCCCeEEEEeCCCc
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRM--------SSPARKVIMRTKSNSISWNP---MEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
.|....+ -|++++.-|.|.|++... ...+..+.....+.+++-.+ ....-++.-+....+..||....
T Consensus 5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 4555554 567777889999998763 34566677777887776544 33333444555667888998765
Q ss_pred cccceeeeCcccceEEEEEcC----CCCEEEEEeCCCeEEEEECCCCceeee
Q 012994 279 DEAKCVHMGHESAVMDIDYSP----TGREFVTGSYDRTIRIFQYNGGRSREI 326 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~----~g~~l~s~~~dg~i~iwd~~~~~~~~~ 326 (452)
...... .-...|.++.+-. +..++++| .+..|.-||.+..+..+.
T Consensus 84 ~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhhh--hCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 544322 2335667776633 23344444 477788888775554443
No 492
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=85.07 E-value=12 Score=35.79 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=36.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCe------------EE-----------EEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 292 VMDIDYSPTGREFVTGSYDRT------------IR-----------IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~------------i~-----------iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.-.|+|+|+|++++.-...+. +. ..+...+.....+.......++.++|+||++.|+
T Consensus 438 PDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlF 517 (524)
T PF05787_consen 438 PDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLF 517 (524)
T ss_pred CCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEE
Confidence 345789999887665433221 11 1122334444455555567899999999999887
Q ss_pred Ee
Q 012994 349 SG 350 (452)
Q Consensus 349 s~ 350 (452)
..
T Consensus 518 vn 519 (524)
T PF05787_consen 518 VN 519 (524)
T ss_pred EE
Confidence 63
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.66 E-value=10 Score=31.94 Aligned_cols=124 Identities=17% Similarity=0.184 Sum_probs=66.3
Q ss_pred EeCCCCcceEEEeeC-C--CcEEEEeCCCCceEEEee------cCCCCeeEEEEccCCCeEEEEeCCCc-EEEEeCCCCC
Q 012994 73 AKNPNYLKGFFSGSM-D--GDIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDCT-VKLWNVPVAT 142 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~-d--g~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~dg~-v~iwd~~~~~ 142 (452)
++.++| ++|.+|+. + ..+++++..+......+. .....--+..-.+||+.|+.|+.+.. ..+|.-....
T Consensus 73 ~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 467888 88888875 2 347788754411011111 12223334455679999999887632 2233221110
Q ss_pred C-CCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceeccc
Q 012994 143 L-TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 143 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~ 201 (452)
. ...... ..........+-...+...|+|++|+.+...-.|||..+++.+..+..
T Consensus 152 ~~~~~~~~----l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PGPVTLPF----LSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIYDYKTNTVVRTLPD 207 (243)
T ss_pred CCceeeec----chhhhccCccccCceEEEcCCCCEEEEEcCCcEEEeCCCCeEEeeCCC
Confidence 0 000000 000000011122335667899999999999999999998877666554
No 494
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.21 E-value=41 Score=32.34 Aligned_cols=250 Identities=11% Similarity=0.110 Sum_probs=106.7
Q ss_pred CCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecC-CCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 75 NPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGH-QGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 75 ~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h-~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
..++ ..++.+..+|.+....+.... .....-+. .....++.+..++ .+|+.|+.-|.=.++.+....
T Consensus 219 ~~~~-~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-------- 289 (504)
T PF10433_consen 219 DKDG-DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-------- 289 (504)
T ss_dssp STTS-SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES--------
T ss_pred cCCC-CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC--------
Confidence 3444 778889999999888776533 12222222 4556777777654 477777765544444443111
Q ss_pred CCCCCCeeEEEecCCeeeeeecC-----CC------CeEEEeC----CeEEEEeCCCCCcce-----eccc-CCCceEEE
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQW-----EG------DLFATAG----AQVDIWNHNRSQPIN-----SFQW-GTDTVISV 209 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~----~~i~i~d~~~~~~~~-----~~~~-~~~~i~~~ 209 (452)
.........-+++..+.... .. .+++++| |.+++..- |-... .... ....+..+
T Consensus 290 ---l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l 364 (504)
T PF10433_consen 290 ---LEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTL 364 (504)
T ss_dssp ---EEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE
T ss_pred ---cEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEe
Confidence 12223333344555555532 11 3455544 34555532 21111 1111 12234444
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccC---CCCceEEE---eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRM---SSPARKVI---MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.....+..+++.+.. ..-+++.+.. ...+.... .......+....-+...++-.+ ...+++.+.........
T Consensus 365 ~~~~~~~~~lv~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt-~~~i~l~~~~~~~~~~~ 442 (504)
T PF10433_consen 365 KLSSSDHSYLVLSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVT-PKGIRLIDLEDGKLTQE 442 (504)
T ss_dssp -SSSSSBSEEEEEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEE-SSEEEEEESSSTSEEEE
T ss_pred eecCCCceEEEEEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEe-cCeEEEEECCCCeEEEE
Confidence 443322345555544 4455665542 22221111 0111112221111122122222 22355666544333333
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC----CcCcEEEEEEcC
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK----RMQRVFCVKFSC 342 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~s~ 342 (452)
........|.+.+.. +.+++.+..++.+..+.+............ ....|.|+...|
T Consensus 443 w~~~~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 443 WKPPAGSIIVAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE-TTS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EeCCCCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 333344556666654 356666667888999988776654332211 236788887765
No 495
>PLN02193 nitrile-specifier protein
Probab=84.00 E-value=40 Score=32.05 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=36.0
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCceeeeecc---CCc-CcEEEEEEcCCCCEEEEeeCC--------------CcEE
Q 012994 300 TGREFVTGSYD----RTIRIFQYNGGRSREIYHT---KRM-QRVFCVKFSCDASYVISGSDD--------------TNLR 357 (452)
Q Consensus 300 ~g~~l~s~~~d----g~i~iwd~~~~~~~~~~~~---~~~-~~v~~~~~s~~~~~l~s~~~d--------------g~i~ 357 (452)
++++++.++.+ ..+.+||+.+.+-...... ... ....++. -++++++.|+.+ ..+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEE
Confidence 56777777655 4589999987654333211 110 1122222 256777777753 2467
Q ss_pred Eeeccccc
Q 012994 358 LWKAKASE 365 (452)
Q Consensus 358 iw~~~~~~ 365 (452)
+||+.+.+
T Consensus 406 ~~D~~t~~ 413 (470)
T PLN02193 406 ALDTETLQ 413 (470)
T ss_pred EEEcCcCE
Confidence 77776543
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=83.62 E-value=32 Score=30.73 Aligned_cols=153 Identities=14% Similarity=0.215 Sum_probs=86.7
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCc------EEEEeCCC--C--ceE-----EEeecCCC--------CeeEEEEccCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGD------IRLWDIAN--R--RTV-----CQYSGHQG--------AVRGLTVSTDG 121 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~------i~iwd~~~--~--~~~-----~~~~~h~~--------~v~~l~~~~~~ 121 (452)
.-+.+..|.+.+++ ..+++.+.+|. +...++.. + ..+ ..+..-.+ -.-+|++.+++
T Consensus 18 ~~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG 96 (326)
T ss_pred ccCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC
Confidence 35678999999765 56777777777 66666543 1 111 11222222 23377887788
Q ss_pred CeEEEEeCC------CcEEEEeCCCCCCCCCCCCCCCCCC---CeeEEEecCCeeeeeecCCCCeEEEe-C------C--
Q 012994 122 RILVSCGTD------CTVKLWNVPVATLTDSDDSTDNSSE---PLAVYVWKNSFWAVDHQWEGDLFATA-G------A-- 183 (452)
Q Consensus 122 ~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~-- 183 (452)
.++++.-.+ ..|..++.. +.....+........ .......+..+.+++++++|..+.+. . +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 877776666 778888866 555443322111100 01344556788999999999944332 1 1
Q ss_pred e-------EEE--EeCCC-CCccee----ccc-----CCCceEEEEECCCCCcEEE
Q 012994 184 Q-------VDI--WNHNR-SQPINS----FQW-----GTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 184 ~-------i~i--~d~~~-~~~~~~----~~~-----~~~~i~~~~~~~~~~~~l~ 220 (452)
. +++ ||..+ +.+... +.. ....+..+.+.+++ .+|+
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLv 230 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLV 230 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEE
Confidence 1 344 45444 222222 221 34578888888887 4544
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.57 E-value=58 Score=33.60 Aligned_cols=173 Identities=13% Similarity=0.142 Sum_probs=95.4
Q ss_pred EEEEeCCCCCcceecccCC----CceEEEEECCCCCc-EEEEEe-----------cCCeEEEEEccCCCCceEEEeec--
Q 012994 185 VDIWNHNRSQPINSFQWGT----DTVISVRFNPAEPN-VLATTA-----------SDRSITLYDLRMSSPARKVIMRT-- 246 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~----~~i~~~~~~~~~~~-~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~-- 246 (452)
+.+.|..+++.+..+.... -.+..+.|+..+.. ++++|. .+|.++.|++-.......+.+..
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 5555555555444333222 23555666654433 333333 24557777765444333333333
Q ss_pred ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-ccceEEEEEcCCCCEEEEEeCCCeEEE--EECCCCce
Q 012994 247 KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH-ESAVMDIDYSPTGREFVTGSYDRTIRI--FQYNGGRS 323 (452)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~i--wd~~~~~~ 323 (452)
...-.+..|..+. +.++-...+++||+.+..........+ ...|+.+++ .+..++.|..--.|.+ |+-...+.
T Consensus 935 ~~~v~Ai~~f~~~--~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 935 PGPVGAICPFQGR--VLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CccceEEeccCCE--EEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeE
Confidence 2344566777764 334456789999987654333222222 456777776 4567777776555555 44444555
Q ss_pred eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 324 REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 324 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.......-...|+++.+-.. ..++.+..=|.+.+-.+.
T Consensus 1011 ~~fadD~~pR~Vt~~~~lD~-~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1011 IVFADDPVPRHVTALELLDY-DTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEeCCCccceeeEEEEecC-CceeeccccCcEEEEECC
Confidence 54444433466888777644 457777777777776654
No 498
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.86 E-value=4.1 Score=39.43 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=48.9
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
..++++.-+|.|+.++.+..||.|.+|+....+........ .+-..+.|...| |+++++|..+.-|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~--~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA--KPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc--CCccceeeeccc--eEEEeccchhheeec
Confidence 45778888999999999999999999998766553333222 344556676555 666677878877864
No 499
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.19 E-value=6.5 Score=21.71 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCceEEEEECCCCCcEEEEEecC--CeEEEE
Q 012994 203 TDTVISVRFNPAEPNVLATTASD--RSITLY 231 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~d--g~i~i~ 231 (452)
...-....|+|+|..++.++..+ |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 45667889999997777777777 766665
No 500
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.04 E-value=45 Score=31.27 Aligned_cols=122 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
+..+...-.....++|.|++ ++|++--..|.|++++..+.......
T Consensus 22 ~~~va~GL~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~~~~--------------------------------- 67 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDN-QLWVTERATGKILRVNPETGEVKVVF--------------------------------- 67 (454)
T ss_pred EEEEECCCCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCceeeee---------------------------------
Q ss_pred CCccccceeeeCcccceEEEEEcCCC------CEEEEEe----------CCCeEEEEECCCC--------ceeeeeccCC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTG------REFVTGS----------YDRTIRIFQYNGG--------RSREIYHTKR 331 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g------~~l~s~~----------~dg~i~iwd~~~~--------~~~~~~~~~~ 331 (452)
................|+++|+- .+|.... ....|.-|.+... ..+.......
T Consensus 68 ---~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~ 144 (454)
T TIGR03606 68 ---TLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGN 144 (454)
T ss_pred ---cCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCC
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCC
Q 012994 332 MQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
...-..|+|.|||.+.++.++.+
T Consensus 145 ~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 145 DHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred CcCCceEEECCCCcEEEEECCCC
Done!