Query 012994
Match_columns 452
No_of_seqs 833 out of 3149
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 20:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 4.5E-47 1.5E-51 348.7 36.6 289 57-361 99-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 8.4E-46 2.9E-50 328.5 38.4 291 56-362 22-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 2.5E-45 8.5E-50 328.8 39.3 293 56-360 45-340 (340)
4 2ynn_A Coatomer subunit beta'; 100.0 7.3E-45 2.5E-49 320.5 39.1 291 57-363 4-302 (304)
5 4g56_B MGC81050 protein; prote 100.0 1.6E-45 5.3E-50 331.8 34.6 291 62-365 38-345 (357)
6 3iz6_a 40S ribosomal protein R 100.0 4.6E-45 1.6E-49 332.2 35.4 307 53-366 53-378 (380)
7 2pbi_B Guanine nucleotide-bind 100.0 3.8E-44 1.3E-48 322.5 40.3 295 57-360 55-354 (354)
8 4gqb_B Methylosome protein 50; 100.0 5.3E-45 1.8E-49 325.6 34.2 289 63-365 27-333 (344)
9 1nr0_A Actin interacting prote 100.0 1.4E-44 4.7E-49 349.2 37.1 331 48-404 131-594 (611)
10 3frx_A Guanine nucleotide-bind 100.0 1.8E-43 6.1E-48 313.7 35.9 291 57-364 8-318 (319)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.8E-43 6E-48 317.4 35.4 300 57-369 6-341 (345)
12 2xzm_R RACK1; ribosome, transl 100.0 3.2E-42 1.1E-46 309.2 37.8 292 57-365 12-342 (343)
13 4ery_A WD repeat-containing pr 100.0 7.9E-42 2.7E-46 302.8 39.5 289 57-362 14-311 (312)
14 1nr0_A Actin interacting prote 100.0 4.3E-42 1.5E-46 331.8 38.6 293 63-370 15-362 (611)
15 2hes_X YDR267CP; beta-propelle 100.0 3.1E-42 1.1E-46 307.3 34.4 297 56-363 4-328 (330)
16 4aow_A Guanine nucleotide-bind 100.0 4.2E-41 1.4E-45 302.0 38.4 293 57-365 29-339 (340)
17 1erj_A Transcriptional repress 100.0 2E-41 6.7E-46 309.7 36.0 284 64-364 62-390 (393)
18 3zwl_B Eukaryotic translation 100.0 1.3E-40 4.4E-45 302.3 39.7 294 60-372 26-355 (369)
19 3ei3_B DNA damage-binding prot 100.0 8.1E-41 2.8E-45 305.2 37.6 302 45-363 52-382 (383)
20 1gxr_A ESG1, transducin-like e 100.0 2.8E-41 9.7E-46 302.7 32.2 283 61-361 46-335 (337)
21 2ynn_A Coatomer subunit beta'; 100.0 1.3E-40 4.4E-45 293.3 35.3 275 100-405 4-284 (304)
22 2ymu_A WD-40 repeat protein; u 100.0 3.2E-41 1.1E-45 324.9 34.2 333 33-407 230-565 (577)
23 2ymu_A WD-40 repeat protein; u 100.0 8.6E-41 2.9E-45 321.9 34.7 304 33-360 271-577 (577)
24 1sq9_A Antiviral protein SKI8; 100.0 9.4E-41 3.2E-45 306.4 32.8 294 57-365 7-397 (397)
25 3i2n_A WD repeat-containing pr 100.0 2.8E-40 9.6E-45 298.7 34.4 295 59-366 11-356 (357)
26 4e54_B DNA damage-binding prot 100.0 3E-41 1E-45 312.8 28.0 295 58-366 111-433 (435)
27 1r5m_A SIR4-interacting protei 100.0 6.5E-41 2.2E-45 310.2 29.3 327 30-362 51-424 (425)
28 2pm7_B Protein transport prote 100.0 6.2E-40 2.1E-44 288.0 33.7 253 59-362 2-284 (297)
29 2pm9_A Protein WEB1, protein t 100.0 4.7E-41 1.6E-45 310.4 27.7 296 65-370 11-344 (416)
30 3odt_A Protein DOA1; ubiquitin 100.0 7.4E-40 2.5E-44 290.4 34.1 294 55-371 7-304 (313)
31 2pm9_A Protein WEB1, protein t 100.0 1.4E-41 4.9E-46 313.9 23.8 315 44-364 43-415 (416)
32 3dm0_A Maltose-binding peripla 100.0 1.7E-39 5.7E-44 318.9 38.9 289 58-362 374-692 (694)
33 1vyh_C Platelet-activating fac 100.0 3.1E-40 1.1E-44 303.2 28.2 273 32-319 116-410 (410)
34 3k26_A Polycomb protein EED; W 100.0 5.1E-40 1.8E-44 298.0 29.1 287 61-363 13-366 (366)
35 3iz6_a 40S ribosomal protein R 100.0 2.4E-40 8.3E-45 301.0 26.5 293 90-407 47-360 (380)
36 1k8k_C P40, ARP2/3 complex 41 100.0 7.8E-40 2.7E-44 297.6 29.7 291 62-367 4-365 (372)
37 4a11_B DNA excision repair pro 100.0 1.9E-38 6.4E-43 292.1 38.6 316 39-370 16-372 (408)
38 4g56_B MGC81050 protein; prote 100.0 3.9E-40 1.3E-44 296.6 26.6 309 71-413 10-333 (357)
39 3gre_A Serine/threonine-protei 100.0 4.8E-40 1.6E-44 305.6 27.9 301 50-360 47-437 (437)
40 1r5m_A SIR4-interacting protei 100.0 3.9E-39 1.3E-43 298.3 32.8 283 63-365 42-363 (425)
41 3vl1_A 26S proteasome regulato 100.0 1.6E-39 5.6E-44 300.5 28.7 319 29-363 61-419 (420)
42 3bg1_A Protein SEC13 homolog; 100.0 1.4E-39 4.8E-44 288.3 26.1 252 60-362 7-292 (316)
43 3ow8_A WD repeat-containing pr 100.0 2.4E-39 8.1E-44 287.1 27.2 265 39-319 51-320 (321)
44 3vl1_A 26S proteasome regulato 100.0 3.6E-40 1.2E-44 304.9 21.8 313 67-404 57-398 (420)
45 4aez_A CDC20, WD repeat-contai 100.0 1.7E-38 6E-43 291.3 32.4 289 62-370 87-387 (401)
46 4gqb_B Methylosome protein 50; 100.0 3.1E-38 1E-42 281.9 32.6 244 63-322 79-333 (344)
47 1got_B GT-beta; complex (GTP-b 100.0 1.1E-38 3.7E-43 285.7 27.4 269 32-317 63-340 (340)
48 2pbi_B Guanine nucleotide-bind 100.0 2.5E-37 8.6E-42 278.1 36.1 277 100-407 55-342 (354)
49 3dwl_C Actin-related protein 2 100.0 1.4E-39 4.8E-44 296.4 21.4 287 62-361 7-377 (377)
50 3sfz_A APAF-1, apoptotic pepti 100.0 1.1E-37 3.8E-42 325.8 38.5 290 60-366 609-916 (1249)
51 1pgu_A Actin interacting prote 100.0 2.1E-38 7.1E-43 307.7 30.1 331 41-404 178-597 (615)
52 1gxr_A ESG1, transducin-like e 100.0 6.9E-38 2.3E-42 280.7 30.4 307 65-407 8-322 (337)
53 4h5i_A Guanine nucleotide-exch 100.0 3.5E-38 1.2E-42 284.6 28.6 290 66-364 14-344 (365)
54 3mkq_A Coatomer beta'-subunit; 100.0 3E-37 1E-41 309.3 36.7 296 57-368 4-307 (814)
55 3dw8_B Serine/threonine-protei 100.0 1.9E-37 6.4E-42 289.1 32.3 295 64-362 26-445 (447)
56 3mmy_A MRNA export factor; mRN 100.0 7.4E-37 2.5E-41 277.4 34.9 295 51-363 24-346 (368)
57 3frx_A Guanine nucleotide-bind 100.0 2.8E-37 9.6E-42 273.9 31.3 266 39-321 33-318 (319)
58 1yfq_A Cell cycle arrest prote 100.0 2.9E-37 1E-41 277.2 31.3 279 60-360 5-321 (342)
59 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-37 1.1E-41 277.7 31.5 264 60-369 5-343 (351)
60 3jrp_A Fusion protein of prote 100.0 1.6E-37 5.4E-42 283.0 29.7 258 57-366 2-290 (379)
61 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-38 1.5E-42 314.5 27.5 328 31-366 24-522 (902)
62 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.8E-38 2E-42 281.5 25.6 295 99-412 5-324 (345)
63 4gga_A P55CDC, cell division c 100.0 1.6E-36 5.3E-41 280.0 35.4 280 68-368 107-400 (420)
64 3v7d_B Cell division control p 100.0 1.3E-36 4.6E-41 284.6 35.3 302 57-400 112-442 (464)
65 4ery_A WD repeat-containing pr 100.0 1.6E-36 5.5E-41 268.7 33.7 278 99-407 13-295 (312)
66 2xzm_R RACK1; ribosome, transl 100.0 2.4E-37 8.2E-42 277.4 28.3 272 35-321 38-341 (343)
67 1pgu_A Actin interacting prote 100.0 1.3E-36 4.5E-41 295.0 34.3 299 63-371 15-336 (615)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-37 5.3E-42 324.8 29.5 349 46-408 819-1195(1249)
69 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.2E-36 2.1E-40 278.4 37.2 323 40-404 92-420 (445)
70 4ggc_A P55CDC, cell division c 100.0 6.9E-36 2.3E-40 265.4 35.6 275 69-364 28-316 (318)
71 1erj_A Transcriptional repress 100.0 2.4E-36 8.1E-41 276.0 33.2 276 107-402 62-363 (393)
72 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-37 4.3E-42 311.1 26.6 337 32-372 106-673 (902)
73 3v7d_B Cell division control p 100.0 9.7E-36 3.3E-40 278.8 34.8 309 41-361 137-461 (464)
74 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-35 4.8E-40 276.0 35.2 296 41-363 134-442 (445)
75 4aez_A CDC20, WD repeat-contai 100.0 5.1E-36 1.7E-40 274.9 31.5 282 43-338 110-398 (401)
76 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-36 5.2E-41 284.2 28.2 294 65-363 132-517 (524)
77 2hes_X YDR267CP; beta-propelle 100.0 2.3E-36 7.7E-41 269.4 27.0 267 42-320 30-328 (330)
78 1p22_A F-BOX/WD-repeat protein 100.0 2.4E-35 8.2E-40 273.4 31.6 278 61-369 128-420 (435)
79 2xyi_A Probable histone-bindin 100.0 1.5E-35 5.1E-40 274.1 29.9 261 60-365 122-412 (430)
80 3mkq_A Coatomer beta'-subunit; 100.0 6.8E-36 2.3E-40 299.4 28.8 316 31-363 20-386 (814)
81 3vu4_A KMHSV2; beta-propeller 100.0 8.6E-35 2.9E-39 261.7 31.5 292 50-366 3-339 (355)
82 4gga_A P55CDC, cell division c 100.0 1.1E-34 3.7E-39 267.7 32.9 267 45-326 124-401 (420)
83 2aq5_A Coronin-1A; WD40 repeat 100.0 2.4E-35 8.1E-40 270.7 28.2 290 68-366 36-345 (402)
84 3jro_A Fusion protein of prote 100.0 1.6E-35 5.6E-40 292.1 26.9 256 59-366 2-288 (753)
85 3zwl_B Eukaryotic translation 100.0 5.7E-35 2E-39 265.0 27.2 288 32-324 40-350 (369)
86 4aow_A Guanine nucleotide-bind 100.0 4.8E-34 1.7E-38 256.0 30.7 289 99-407 28-322 (340)
87 3gre_A Serine/threonine-protei 100.0 2.4E-35 8.3E-40 273.9 22.1 312 73-402 34-418 (437)
88 3dm0_A Maltose-binding peripla 100.0 5E-34 1.7E-38 280.0 30.4 266 41-319 400-692 (694)
89 1sq9_A Antiviral protein SKI8; 100.0 2E-33 6.7E-38 257.7 30.2 288 102-403 9-366 (397)
90 3ei3_B DNA damage-binding prot 100.0 8.2E-34 2.8E-38 258.9 27.3 285 93-407 57-368 (383)
91 3i2n_A WD repeat-containing pr 100.0 6.9E-34 2.4E-38 256.8 26.4 267 45-322 43-355 (357)
92 1l0q_A Surface layer protein; 100.0 1.9E-32 6.5E-37 250.6 35.8 274 80-372 3-284 (391)
93 3bws_A Protein LP49; two-domai 100.0 1.4E-32 4.6E-37 255.1 33.8 286 58-363 115-432 (433)
94 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-34 7.4E-39 261.7 20.8 278 32-323 16-364 (372)
95 1yfq_A Cell cycle arrest prote 100.0 2.2E-33 7.4E-38 252.0 27.0 269 105-407 7-308 (342)
96 3k26_A Polycomb protein EED; W 100.0 1.5E-33 5.3E-38 255.4 26.1 262 45-319 43-365 (366)
97 2j04_A TAU60, YPL007P, hypothe 100.0 2.1E-34 7.2E-39 262.8 20.2 261 63-362 12-296 (588)
98 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.5E-32 1.2E-36 253.3 34.3 281 66-363 4-391 (450)
99 4e54_B DNA damage-binding prot 100.0 3.1E-34 1.1E-38 265.8 20.3 279 31-324 126-434 (435)
100 4ggc_A P55CDC, cell division c 100.0 5.1E-32 1.7E-36 240.5 32.6 264 43-321 42-316 (318)
101 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-33 5.1E-38 258.7 23.3 265 45-323 56-345 (402)
102 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-32 1.2E-36 241.0 30.5 265 99-404 8-279 (313)
103 4a11_B DNA excision repair pro 100.0 1.6E-32 5.4E-37 252.5 27.9 313 32-363 51-405 (408)
104 3lrv_A PRE-mRNA-splicing facto 100.0 8.5E-33 2.9E-37 247.9 25.4 242 72-365 42-294 (343)
105 3dwl_C Actin-related protein 2 100.0 7.3E-34 2.5E-38 258.7 18.6 276 29-318 16-377 (377)
106 2pm7_B Protein transport prote 100.0 1.2E-32 4E-37 241.7 24.4 240 32-320 17-285 (297)
107 3mmy_A MRNA export factor; mRN 100.0 7.3E-32 2.5E-36 244.5 30.1 287 93-411 23-335 (368)
108 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-32 3.6E-37 258.2 23.3 264 43-320 180-517 (524)
109 3vu4_A KMHSV2; beta-propeller 100.0 2.5E-31 8.6E-36 239.1 31.0 249 93-365 3-273 (355)
110 3dw8_B Serine/threonine-protei 100.0 2.6E-32 9E-37 254.3 25.3 255 108-367 27-377 (447)
111 4h5i_A Guanine nucleotide-exch 100.0 5.8E-32 2E-36 244.0 25.4 243 61-321 68-344 (365)
112 1p22_A F-BOX/WD-repeat protein 100.0 1.4E-31 4.8E-36 248.1 26.1 272 44-341 151-433 (435)
113 1l0q_A Surface layer protein; 100.0 2.6E-30 9E-35 236.4 34.2 302 46-367 12-346 (391)
114 4gq1_A NUP37; propeller, trans 100.0 4.9E-32 1.7E-36 247.3 22.4 243 64-362 87-388 (393)
115 2w18_A PALB2, fancn, partner a 100.0 1.6E-30 5.5E-35 222.9 29.0 292 57-361 26-355 (356)
116 3bg1_A Protein SEC13 homolog; 100.0 7.3E-32 2.5E-36 238.7 20.8 255 31-319 20-292 (316)
117 2j04_A TAU60, YPL007P, hypothe 100.0 8.6E-31 2.9E-35 239.2 24.1 281 31-352 22-350 (588)
118 3f3f_A Nucleoporin SEH1; struc 100.0 3.5E-31 1.2E-35 238.1 21.0 292 32-326 19-343 (351)
119 3jrp_A Fusion protein of prote 100.0 2.1E-30 7.3E-35 235.9 23.0 240 32-322 19-289 (379)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-29 8.3E-34 234.1 29.2 252 110-364 5-342 (450)
121 2xyi_A Probable histone-bindin 100.0 1.8E-29 6.1E-34 233.4 26.9 230 43-321 148-411 (430)
122 2hqs_A Protein TOLB; TOLB, PAL 100.0 2E-29 6.7E-34 231.3 26.1 302 65-403 61-409 (415)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.2E-29 4.1E-34 227.4 23.8 263 36-362 48-332 (343)
124 1nir_A Nitrite reductase; hemo 100.0 2.5E-28 8.4E-33 230.6 33.4 336 32-372 145-523 (543)
125 3bws_A Protein LP49; two-domai 100.0 8.1E-29 2.8E-33 229.7 28.6 312 65-407 59-416 (433)
126 1nir_A Nitrite reductase; hemo 100.0 1E-27 3.5E-32 226.4 32.5 278 73-367 144-462 (543)
127 3jro_A Fusion protein of prote 100.0 5.4E-29 1.9E-33 245.6 21.9 241 31-322 16-287 (753)
128 4gq1_A NUP37; propeller, trans 100.0 1.4E-28 5E-33 224.3 19.1 251 39-319 104-388 (393)
129 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.6E-32 205.5 21.3 216 47-318 64-355 (356)
130 1pby_B Quinohemoprotein amine 100.0 1.2E-26 4E-31 207.6 27.5 278 80-372 2-319 (337)
131 3u4y_A Uncharacterized protein 100.0 1.3E-25 4.4E-30 200.4 33.9 278 73-366 4-307 (331)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 9.5E-27 3.3E-31 213.4 24.9 276 47-344 94-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 6.3E-26 2.1E-30 224.7 27.9 285 66-370 36-421 (741)
134 1ri6_A Putative isomerase YBHE 99.9 1E-24 3.4E-29 195.5 28.9 267 80-362 6-307 (343)
135 2ojh_A Uncharacterized protein 99.9 2.1E-25 7.3E-30 195.5 23.3 256 84-354 17-293 (297)
136 3vgz_A Uncharacterized protein 99.9 6.9E-24 2.4E-28 190.9 31.9 279 65-354 39-335 (353)
137 1xfd_A DIP, dipeptidyl aminope 99.9 2.5E-25 8.4E-30 219.9 24.4 283 68-364 18-394 (723)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2E-24 6.7E-29 212.8 30.2 289 67-365 82-437 (706)
139 2ecf_A Dipeptidyl peptidase IV 99.9 2.6E-25 9E-30 220.2 22.8 323 29-364 41-460 (741)
140 1jmx_B Amine dehydrogenase; ox 99.9 4.2E-24 1.5E-28 191.9 26.5 274 71-370 4-332 (349)
141 1xfd_A DIP, dipeptidyl aminope 99.9 2.1E-24 7.1E-29 213.3 26.6 333 27-368 19-448 (723)
142 1k32_A Tricorn protease; prote 99.9 3E-25 1E-29 227.1 21.3 315 28-365 56-463 (1045)
143 3u4y_A Uncharacterized protein 99.9 1.4E-23 4.8E-28 187.1 28.8 262 47-323 21-307 (331)
144 1ri6_A Putative isomerase YBHE 99.9 5E-23 1.7E-27 184.5 28.3 269 63-344 34-334 (343)
145 1k32_A Tricorn protease; prote 99.9 3E-23 1E-27 212.3 27.6 328 48-407 35-436 (1045)
146 3hfq_A Uncharacterized protein 99.9 2.9E-22 9.9E-27 179.8 30.2 273 81-367 4-323 (347)
147 3o4h_A Acylamino-acid-releasin 99.9 9E-24 3.1E-28 203.1 20.3 268 66-363 21-315 (582)
148 2z3z_A Dipeptidyl aminopeptida 99.9 3.9E-23 1.3E-27 203.5 23.2 275 69-365 28-393 (706)
149 3vgz_A Uncharacterized protein 99.9 1.8E-21 6E-26 175.1 29.5 246 108-370 39-310 (353)
150 3hfq_A Uncharacterized protein 99.9 3.3E-21 1.1E-25 172.9 30.7 252 63-326 36-325 (347)
151 3scy_A Hypothetical bacterial 99.9 4E-21 1.4E-25 173.4 30.4 273 80-367 14-343 (361)
152 2ojh_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 173.8 22.1 251 126-407 17-287 (297)
153 1pby_B Quinohemoprotein amine 99.9 2E-21 6.7E-26 173.6 25.1 262 49-330 14-320 (337)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 1.1E-22 3.6E-27 187.1 16.7 212 66-364 36-279 (434)
155 3scy_A Hypothetical bacterial 99.9 5.6E-20 1.9E-24 165.8 32.9 273 65-341 48-360 (361)
156 3pe7_A Oligogalacturonate lyas 99.9 4.5E-21 1.6E-25 174.8 25.4 293 55-363 19-382 (388)
157 1z68_A Fibroblast activation p 99.9 5.2E-21 1.8E-25 188.7 24.0 273 71-363 20-391 (719)
158 1z68_A Fibroblast activation p 99.9 6.4E-22 2.2E-26 195.2 16.6 331 27-370 18-450 (719)
159 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.1E-19 3.9E-24 163.9 28.7 271 81-364 4-342 (365)
160 3o4h_A Acylamino-acid-releasin 99.9 8.7E-21 3E-25 182.3 20.1 237 109-368 21-279 (582)
161 1jmx_B Amine dehydrogenase; ox 99.9 8.7E-20 3E-24 163.7 24.0 259 46-329 21-334 (349)
162 4a5s_A Dipeptidyl peptidase 4 99.9 4E-20 1.4E-24 182.5 21.0 276 68-367 18-357 (740)
163 2oiz_A Aromatic amine dehydrog 99.8 6.6E-19 2.2E-23 158.0 26.3 269 87-370 29-343 (361)
164 3fvz_A Peptidyl-glycine alpha- 99.8 4E-18 1.4E-22 151.3 30.0 254 66-363 23-322 (329)
165 2oit_A Nucleoporin 214KDA; NH2 99.8 5.2E-19 1.8E-23 162.5 23.7 196 65-275 91-331 (434)
166 2dg1_A DRP35, lactonase; beta 99.8 7.2E-18 2.5E-22 150.2 28.2 269 66-353 5-300 (333)
167 1q7f_A NHL, brain tumor CG1071 99.8 1.9E-17 6.5E-22 144.1 29.6 242 63-366 26-283 (286)
168 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.4E-18 8E-23 155.2 24.5 244 65-321 38-342 (365)
169 3c5m_A Oligogalacturonate lyas 99.8 6.7E-19 2.3E-23 160.9 20.9 287 68-362 37-381 (396)
170 2gop_A Trilobed protease; beta 99.8 4.9E-17 1.7E-21 145.7 29.0 257 67-362 15-330 (347)
171 2oiz_A Aromatic amine dehydrog 99.8 3E-17 1E-21 147.2 26.5 273 49-345 34-360 (361)
172 3azo_A Aminopeptidase; POP fam 99.8 2.9E-17 9.8E-22 160.5 27.4 291 60-366 17-372 (662)
173 3pe7_A Oligogalacturonate lyas 99.8 4.4E-18 1.5E-22 155.0 20.1 275 29-319 40-381 (388)
174 3dsm_A Uncharacterized protein 99.8 6.8E-17 2.3E-21 143.1 27.1 266 86-371 14-309 (328)
175 2xdw_A Prolyl endopeptidase; a 99.8 1.6E-16 5.3E-21 156.2 30.3 262 64-365 122-416 (710)
176 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-17 7.8E-22 162.8 24.4 332 27-370 19-456 (740)
177 1qks_A Cytochrome CD1 nitrite 99.8 1.8E-15 6.1E-20 142.5 34.2 317 50-371 181-546 (567)
178 1qks_A Cytochrome CD1 nitrite 99.8 1.6E-15 5.6E-20 142.7 33.7 269 80-364 168-478 (567)
179 2z2n_A Virginiamycin B lyase; 99.8 2.3E-14 8E-19 125.2 37.7 280 62-364 10-296 (299)
180 3c5m_A Oligogalacturonate lyas 99.8 2.6E-17 8.9E-22 150.3 18.6 256 92-366 13-332 (396)
181 3e5z_A Putative gluconolactona 99.8 6.5E-16 2.2E-20 135.0 26.2 248 57-365 18-288 (296)
182 2bkl_A Prolyl endopeptidase; m 99.8 7.6E-17 2.6E-21 157.9 22.4 247 64-366 118-400 (695)
183 2mad_H Methylamine dehydrogena 99.7 1.3E-14 4.4E-19 130.1 33.8 280 73-369 27-356 (373)
184 3sjl_D Methylamine dehydrogena 99.7 4.3E-15 1.5E-19 131.2 28.0 284 72-371 38-371 (386)
185 1rwi_B Serine/threonine-protei 99.7 4.2E-15 1.4E-19 128.0 27.6 240 68-366 25-267 (270)
186 3dsm_A Uncharacterized protein 99.7 7.1E-15 2.4E-19 130.1 27.8 255 67-340 44-319 (328)
187 3no2_A Uncharacterized protein 99.7 7.7E-15 2.6E-19 126.0 26.8 230 80-370 6-259 (276)
188 3azo_A Aminopeptidase; POP fam 99.7 2.4E-16 8.3E-21 154.0 19.3 257 104-365 18-327 (662)
189 2dg1_A DRP35, lactonase; beta 99.7 3.5E-14 1.2E-18 126.3 31.5 240 56-310 34-300 (333)
190 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 3E-14 1E-18 125.5 29.6 248 62-363 13-299 (314)
191 1yr2_A Prolyl oligopeptidase; 99.7 7.6E-15 2.6E-19 144.8 24.8 260 64-366 160-444 (741)
192 3c75_H MADH, methylamine dehyd 99.7 1.5E-14 5.1E-19 130.2 23.7 268 89-370 99-409 (426)
193 2qc5_A Streptogramin B lactona 99.7 6.1E-13 2.1E-17 116.2 33.6 275 64-361 17-298 (300)
194 2gop_A Trilobed protease; beta 99.7 3.5E-14 1.2E-18 127.0 23.8 219 110-366 15-294 (347)
195 3hrp_A Uncharacterized protein 99.6 4.7E-13 1.6E-17 121.7 29.2 238 67-361 131-408 (409)
196 1q7f_A NHL, brain tumor CG1071 99.6 5.8E-13 2E-17 115.6 25.9 197 64-321 74-281 (286)
197 3g4e_A Regucalcin; six bladed 99.6 3.1E-12 1.1E-16 111.5 29.9 231 106-352 9-261 (297)
198 3sjl_D Methylamine dehydrogena 99.6 9.6E-13 3.3E-17 116.3 26.6 272 50-343 63-384 (386)
199 2z2n_A Virginiamycin B lyase; 99.6 5.1E-12 1.8E-16 110.3 30.9 236 106-361 11-253 (299)
200 1mda_H Methylamine dehydrogena 99.6 1.4E-13 4.8E-18 121.9 20.6 271 80-371 33-354 (368)
201 3iuj_A Prolyl endopeptidase; h 99.6 3E-13 1E-17 132.1 24.5 257 64-366 126-408 (693)
202 2mad_H Methylamine dehydrogena 99.6 3.4E-12 1.2E-16 114.4 28.8 253 50-326 51-356 (373)
203 3e5z_A Putative gluconolactona 99.6 9.9E-13 3.4E-17 114.7 24.2 209 100-370 18-252 (296)
204 3no2_A Uncharacterized protein 99.6 5.7E-13 2E-17 114.3 21.3 197 120-372 4-204 (276)
205 3fvz_A Peptidyl-glycine alpha- 99.6 1.4E-12 4.7E-17 115.6 23.9 225 50-320 73-322 (329)
206 1xip_A Nucleoporin NUP159; bet 99.5 2E-13 6.7E-18 121.2 16.8 171 68-349 39-230 (388)
207 2xdw_A Prolyl endopeptidase; a 99.5 1.8E-12 6.2E-17 127.3 25.4 240 76-371 81-376 (710)
208 2qe8_A Uncharacterized protein 99.5 6.5E-13 2.2E-17 118.3 19.7 272 67-360 17-318 (343)
209 2ghs_A AGR_C_1268P; regucalcin 99.5 5.5E-11 1.9E-15 105.0 30.9 223 111-352 50-291 (326)
210 2bkl_A Prolyl endopeptidase; m 99.5 5E-12 1.7E-16 123.9 25.8 235 75-367 76-354 (695)
211 2qc5_A Streptogramin B lactona 99.5 2.3E-10 7.9E-15 99.7 33.6 236 107-361 17-258 (300)
212 3dr2_A Exported gluconolactona 99.5 1.4E-11 4.8E-16 107.8 25.3 243 56-356 34-300 (305)
213 3c75_H MADH, methylamine dehyd 99.5 3.7E-11 1.3E-15 108.2 25.8 260 49-327 102-409 (426)
214 1rwi_B Serine/threonine-protei 99.5 1.1E-11 3.9E-16 106.4 21.1 200 65-322 65-266 (270)
215 1kb0_A Quinohemoprotein alcoho 99.5 1.9E-11 6.5E-16 118.4 24.4 280 80-371 78-515 (677)
216 3g4e_A Regucalcin; six bladed 99.4 2.6E-10 9E-15 99.2 29.2 233 63-309 9-261 (297)
217 1yiq_A Quinohemoprotein alcoho 99.4 3.4E-11 1.2E-15 116.9 24.3 276 80-371 71-513 (689)
218 1mda_H Methylamine dehydrogena 99.4 4.9E-11 1.7E-15 105.6 20.1 261 50-342 50-366 (368)
219 2ghs_A AGR_C_1268P; regucalcin 99.4 8.8E-10 3E-14 97.2 27.5 225 67-309 49-291 (326)
220 2ece_A 462AA long hypothetical 99.4 9.5E-10 3.3E-14 97.8 26.5 223 76-308 93-399 (462)
221 3q7m_A Lipoprotein YFGL, BAMB; 99.4 8.5E-10 2.9E-14 99.6 26.9 267 80-370 54-344 (376)
222 2ece_A 462AA long hypothetical 99.3 1.6E-09 5.3E-14 96.5 26.6 222 119-351 93-399 (462)
223 1yr2_A Prolyl oligopeptidase; 99.3 1.6E-10 5.5E-15 114.0 22.5 139 227-368 244-399 (741)
224 1fwx_A Nitrous oxide reductase 99.3 2.5E-10 8.4E-15 105.3 20.9 271 81-365 17-433 (595)
225 1kb0_A Quinohemoprotein alcoho 99.3 2.8E-10 9.7E-15 110.2 21.8 281 80-363 129-567 (677)
226 1xip_A Nucleoporin NUP159; bet 99.3 6E-11 2.1E-15 105.3 15.3 174 204-402 38-224 (388)
227 2hz6_A Endoplasmic reticulum t 99.3 1.3E-12 4.5E-17 117.3 4.2 229 80-371 10-248 (369)
228 3hrp_A Uncharacterized protein 99.3 1.9E-09 6.6E-14 97.9 24.6 197 165-366 132-357 (409)
229 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.5E-09 1.2E-13 92.9 24.5 195 65-277 69-299 (314)
230 1yiq_A Quinohemoprotein alcoho 99.2 1.4E-09 4.7E-14 105.6 22.4 266 80-348 122-533 (689)
231 1npe_A Nidogen, entactin; glyc 99.2 2.8E-08 9.6E-13 84.9 27.7 248 80-345 2-263 (267)
232 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.6E-09 2.6E-13 93.4 25.3 262 80-360 104-375 (376)
233 1kv9_A Type II quinohemoprotei 99.2 8.2E-09 2.8E-13 99.9 23.6 279 80-371 67-496 (668)
234 3hxj_A Pyrrolo-quinoline quino 99.1 5.3E-09 1.8E-13 92.4 20.2 274 56-363 49-324 (330)
235 3dr2_A Exported gluconolactona 99.1 1.4E-08 4.9E-13 88.6 22.4 207 101-370 36-273 (305)
236 2fp8_A Strictosidine synthase; 99.1 9.2E-08 3.2E-12 84.1 27.6 242 67-363 19-313 (322)
237 1fwx_A Nitrous oxide reductase 99.1 1.7E-09 5.7E-14 99.8 16.5 232 76-323 99-434 (595)
238 3hxj_A Pyrrolo-quinoline quino 99.1 3.9E-09 1.3E-13 93.3 16.9 265 70-369 23-289 (330)
239 2iwa_A Glutamine cyclotransfer 99.1 2.4E-08 8E-13 83.6 20.4 195 166-365 23-239 (266)
240 1npe_A Nidogen, entactin; glyc 99.1 1.3E-07 4.5E-12 80.7 25.5 221 67-302 36-263 (267)
241 1w6s_A Methanol dehydrogenase 99.1 1.1E-07 3.7E-12 90.1 26.3 281 80-371 63-511 (599)
242 2ad6_A Methanol dehydrogenase 99.1 4.9E-08 1.7E-12 92.5 24.0 279 80-371 63-502 (571)
243 2hz6_A Endoplasmic reticulum t 99.1 4.7E-11 1.6E-15 107.1 2.9 144 217-369 50-198 (369)
244 3iuj_A Prolyl endopeptidase; h 99.1 1E-08 3.5E-13 100.2 19.6 136 226-365 208-361 (693)
245 2p4o_A Hypothetical protein; p 99.0 1.1E-06 3.9E-11 76.5 29.8 234 99-353 22-278 (306)
246 2iwa_A Glutamine cyclotransfer 99.0 2.5E-07 8.4E-12 77.4 23.8 202 57-278 10-238 (266)
247 2ad6_A Methanol dehydrogenase 99.0 1.4E-07 4.9E-12 89.3 24.2 264 80-348 116-522 (571)
248 2qe8_A Uncharacterized protein 99.0 1.2E-07 4.2E-12 84.1 22.4 226 63-317 63-318 (343)
249 4a2l_A BT_4663, two-component 99.0 3.1E-06 1.1E-10 84.2 34.5 283 69-366 175-483 (795)
250 1k3i_A Galactose oxidase precu 98.9 6.8E-08 2.3E-12 93.7 20.7 268 71-352 190-530 (656)
251 1flg_A Protein (quinoprotein e 98.9 1E-06 3.6E-11 83.5 27.3 283 80-371 69-524 (582)
252 3nol_A Glutamine cyclotransfer 98.9 5E-07 1.7E-11 74.5 21.7 196 158-361 35-252 (262)
253 3mbr_X Glutamine cyclotransfer 98.9 1.6E-06 5.6E-11 70.9 22.6 189 157-352 12-223 (243)
254 3nok_A Glutaminyl cyclase; bet 98.9 7.6E-07 2.6E-11 73.5 20.6 177 167-351 58-253 (268)
255 2p4o_A Hypothetical protein; p 98.9 5.9E-06 2E-10 71.9 27.7 228 67-311 32-279 (306)
256 3v64_C Agrin; beta propeller, 98.9 1.3E-05 4.5E-10 70.9 30.2 243 66-327 33-282 (349)
257 3nol_A Glutamine cyclotransfer 98.9 1.1E-06 3.7E-11 72.6 21.3 195 57-272 32-251 (262)
258 3v65_B Low-density lipoprotein 98.8 9.8E-06 3.4E-10 72.9 29.3 242 68-328 78-326 (386)
259 1kv9_A Type II quinohemoprotei 98.8 4.1E-07 1.4E-11 88.1 21.5 268 80-349 118-518 (668)
260 3v64_C Agrin; beta propeller, 98.8 1.4E-05 4.7E-10 70.8 28.6 241 112-370 36-282 (349)
261 4a2l_A BT_4663, two-component 98.8 4.1E-05 1.4E-09 76.2 34.8 280 66-365 262-573 (795)
262 1ijq_A LDL receptor, low-densi 98.8 3E-05 1E-09 67.7 29.4 225 131-370 10-245 (316)
263 1flg_A Protein (quinoprotein e 98.8 6.6E-06 2.3E-10 78.1 26.5 266 80-348 118-544 (582)
264 1w6s_A Methanol dehydrogenase 98.7 5.4E-06 1.8E-10 78.6 25.3 263 82-349 124-533 (599)
265 3v65_B Low-density lipoprotein 98.7 1.2E-05 4E-10 72.4 26.1 240 113-370 80-325 (386)
266 4hw6_A Hypothetical protein, I 98.7 9.2E-06 3.2E-10 74.1 25.4 237 111-362 140-432 (433)
267 3nok_A Glutaminyl cyclase; bet 98.7 1.6E-06 5.5E-11 71.5 18.0 191 205-407 56-250 (268)
268 1ijq_A LDL receptor, low-densi 98.7 0.0001 3.4E-09 64.3 30.4 226 89-327 10-245 (316)
269 3v9f_A Two-component system se 98.7 9E-05 3.1E-09 73.6 33.4 284 66-365 257-570 (781)
270 3tc9_A Hypothetical hydrolase; 98.7 1.2E-05 4.3E-10 73.3 24.5 236 111-362 138-429 (430)
271 3v9f_A Two-component system se 98.7 0.00011 3.8E-09 72.9 33.3 284 67-366 163-481 (781)
272 2xe4_A Oligopeptidase B; hydro 98.7 7.1E-06 2.4E-10 80.8 24.4 192 68-275 175-398 (751)
273 3mbr_X Glutamine cyclotransfer 98.7 3E-06 1E-10 69.3 17.9 193 204-407 21-219 (243)
274 3p5b_L Low density lipoprotein 98.6 0.00016 5.6E-09 65.2 30.7 247 81-340 85-339 (400)
275 3qqz_A Putative uncharacterize 98.6 8.5E-05 2.9E-09 61.7 26.4 212 61-318 21-251 (255)
276 3p5b_L Low density lipoprotein 98.6 0.00015 5.2E-09 65.4 29.5 232 123-370 85-327 (400)
277 3kya_A Putative phosphatase; s 98.6 4.1E-05 1.4E-09 70.0 24.9 254 68-370 140-482 (496)
278 3sov_A LRP-6, low-density lipo 98.6 0.00022 7.6E-09 62.0 28.1 226 88-328 12-246 (318)
279 3tc9_A Hypothetical hydrolase; 98.5 0.00015 5.1E-09 66.1 27.5 236 68-319 138-429 (430)
280 1k3i_A Galactose oxidase precu 98.5 8E-06 2.7E-10 79.2 20.0 238 114-365 190-499 (656)
281 3sov_A LRP-6, low-density lipo 98.5 0.00022 7.4E-09 62.1 26.5 227 130-370 12-245 (318)
282 4hw6_A Hypothetical protein, I 98.5 0.00044 1.5E-08 63.0 29.6 235 68-319 140-432 (433)
283 3m0c_C LDL receptor, low-densi 98.4 0.0007 2.4E-08 66.4 29.9 229 88-327 403-639 (791)
284 3qqz_A Putative uncharacterize 98.4 0.0007 2.4E-08 56.2 27.4 202 104-361 21-251 (255)
285 3ei3_A DNA damage-binding prot 98.4 0.0013 4.3E-08 67.5 32.0 286 66-367 553-917 (1158)
286 4a0p_A LRP6, LRP-6, low-densit 98.3 0.002 6.9E-08 61.6 31.0 222 87-324 13-241 (628)
287 1n7d_A LDL receptor, low-densi 98.3 1.2E-05 4.2E-10 78.0 15.0 205 165-371 407-622 (699)
288 2xbg_A YCF48-like protein; pho 98.2 0.002 6.9E-08 56.3 30.8 271 66-360 35-319 (327)
289 1n7d_A LDL receptor, low-densi 98.2 1.6E-05 5.4E-10 77.3 14.5 232 88-329 385-623 (699)
290 3amr_A 3-phytase; beta-propell 98.2 0.00043 1.5E-08 59.8 21.5 199 80-327 41-271 (355)
291 2ism_A Putative oxidoreductase 98.2 0.0014 4.7E-08 58.0 25.8 70 66-139 30-113 (352)
292 3m0c_C LDL receptor, low-densi 98.2 0.0015 5.2E-08 64.0 27.4 204 66-281 423-636 (791)
293 3s94_A LRP-6, low-density lipo 98.2 0.0057 1.9E-07 58.4 35.5 294 67-363 171-510 (619)
294 2fp8_A Strictosidine synthase; 98.1 0.0013 4.5E-08 57.4 23.4 190 67-277 80-313 (322)
295 2xe4_A Oligopeptidase B; hydro 98.1 0.00015 5.3E-09 71.3 19.1 158 205-363 175-354 (751)
296 3amr_A 3-phytase; beta-propell 98.1 0.00081 2.8E-08 58.1 20.6 185 183-371 50-272 (355)
297 2xzh_A Clathrin heavy chain 1; 98.1 0.0039 1.3E-07 52.9 29.3 259 88-367 48-336 (365)
298 2p9w_A MAL S 1 allergenic prot 98.0 0.0044 1.5E-07 53.1 23.7 203 65-320 11-265 (334)
299 4a0p_A LRP6, LRP-6, low-densit 98.0 0.012 4.2E-07 56.2 36.6 293 66-362 165-507 (628)
300 3s94_A LRP-6, low-density lipo 98.0 0.013 4.5E-07 55.9 32.7 199 66-278 39-244 (619)
301 1bpo_A Protein (clathrin); cla 97.9 0.012 4E-07 52.2 31.7 260 88-368 47-336 (494)
302 3a9g_A Putative uncharacterize 97.8 0.015 5.1E-07 51.3 26.8 62 290-351 259-330 (354)
303 3sre_A PON1, serum paraoxonase 97.8 0.0077 2.6E-07 52.7 21.4 133 183-319 139-297 (355)
304 2g8s_A Glucose/sorbosone dehyd 97.8 0.014 4.8E-07 51.5 23.5 70 290-361 271-350 (353)
305 2p9w_A MAL S 1 allergenic prot 97.8 0.0025 8.6E-08 54.6 17.5 159 203-363 12-215 (334)
306 2vpj_A Kelch-like protein 12; 97.7 0.0076 2.6E-07 51.9 20.8 142 217-364 114-279 (301)
307 3kya_A Putative phosphatase; s 97.7 0.0011 3.8E-08 60.7 14.8 157 205-362 140-340 (496)
308 3sre_A PON1, serum paraoxonase 97.6 0.0082 2.8E-07 52.6 19.2 181 68-259 51-280 (355)
309 2xn4_A Kelch-like protein 2; s 97.6 0.012 4.1E-07 50.7 19.7 64 300-365 204-278 (302)
310 3pbp_A Nucleoporin NUP82; beta 97.6 0.012 3.9E-07 52.2 19.0 163 171-360 29-209 (452)
311 1xi4_A Clathrin heavy chain; a 97.5 0.032 1.1E-06 57.3 23.8 263 88-368 47-336 (1630)
312 3ii7_A Kelch-like protein 7; p 97.5 0.015 5.1E-07 50.1 19.5 64 300-365 200-274 (306)
313 2xzh_A Clathrin heavy chain 1; 97.4 0.044 1.5E-06 46.7 24.3 218 131-369 49-296 (365)
314 3ei3_A DNA damage-binding prot 97.4 0.16 5.5E-06 52.2 33.0 174 184-363 808-999 (1158)
315 1zgk_A Kelch-like ECH-associat 97.3 0.028 9.5E-07 48.5 18.3 104 257-364 168-288 (308)
316 1bpo_A Protein (clathrin); cla 97.2 0.1 3.5E-06 46.4 25.3 218 130-368 47-294 (494)
317 2xbg_A YCF48-like protein; pho 97.2 0.11 3.6E-06 45.3 27.6 235 109-365 35-280 (327)
318 3pbp_A Nucleoporin NUP82; beta 97.1 0.14 4.7E-06 45.5 21.4 119 165-316 67-208 (452)
319 4asc_A Kelch repeat and BTB do 97.1 0.025 8.4E-07 49.0 15.9 183 173-365 44-279 (315)
320 3ott_A Two-component system se 97.0 0.34 1.2E-05 47.8 33.2 283 68-366 192-505 (758)
321 3das_A Putative oxidoreductase 97.0 0.17 5.8E-06 44.1 29.7 75 65-140 30-116 (347)
322 1cru_A Protein (soluble quinop 96.9 0.24 8.3E-06 45.2 26.7 61 67-128 27-98 (454)
323 1tl2_A L10, protein (tachylect 96.9 0.027 9.3E-07 44.9 12.7 141 205-355 42-202 (236)
324 2be1_A Serine/threonine-protei 96.9 0.025 8.7E-07 49.0 13.6 62 80-141 11-77 (339)
325 1cru_A Protein (soluble quinop 96.8 0.26 9E-06 45.0 21.0 159 203-364 26-260 (454)
326 2woz_A Kelch repeat and BTB do 96.8 0.2 6.9E-06 43.2 19.5 64 300-365 206-289 (318)
327 2vpj_A Kelch-like protein 12; 96.8 0.059 2E-06 46.2 15.6 173 184-365 32-233 (301)
328 3sbq_A Nitrous-oxide reductase 96.6 0.44 1.5E-05 43.9 24.9 94 227-320 299-408 (638)
329 2uvk_A YJHT; unknown function, 96.5 0.12 4.1E-06 45.5 16.2 55 312-369 286-348 (357)
330 2ism_A Putative oxidoreductase 96.5 0.42 1.4E-05 42.0 23.5 194 66-263 74-332 (352)
331 3ii7_A Kelch-like protein 7; p 96.4 0.13 4.4E-06 44.2 15.3 179 177-364 14-226 (306)
332 1zgk_A Kelch-like ECH-associat 96.4 0.085 2.9E-06 45.4 14.0 184 173-365 23-242 (308)
333 2xn4_A Kelch-like protein 2; s 96.3 0.1 3.5E-06 44.7 13.8 172 184-365 31-231 (302)
334 3s25_A Hypothetical 7-bladed b 96.2 0.46 1.6E-05 40.6 17.4 159 184-362 89-254 (302)
335 4asc_A Kelch repeat and BTB do 96.2 0.13 4.4E-06 44.4 14.2 180 177-364 7-222 (315)
336 1tl2_A L10, protein (tachylect 96.2 0.23 7.9E-06 39.7 13.9 136 217-360 5-160 (236)
337 3ott_A Two-component system se 96.2 1.1 3.8E-05 44.0 36.1 269 67-362 146-447 (758)
338 3das_A Putative oxidoreductase 96.1 0.42 1.4E-05 41.6 16.5 146 202-349 30-218 (347)
339 1xi4_A Clathrin heavy chain; a 95.8 0.5 1.7E-05 48.9 17.4 195 170-370 72-296 (1630)
340 2woz_A Kelch repeat and BTB do 95.7 0.2 6.9E-06 43.3 13.3 182 176-365 17-233 (318)
341 3sbq_A Nitrous-oxide reductase 95.7 1.3 4.5E-05 40.8 20.4 239 124-364 73-409 (638)
342 2be1_A Serine/threonine-protei 95.4 0.12 4E-06 44.9 10.3 114 217-330 11-140 (339)
343 2zwa_A Leucine carboxyl methyl 95.1 1.3 4.5E-05 43.0 17.9 147 80-237 399-579 (695)
344 2zwa_A Leucine carboxyl methyl 94.7 0.63 2.2E-05 45.2 14.5 190 173-366 396-638 (695)
345 3a9g_A Putative uncharacterize 93.9 3 0.0001 36.5 24.5 113 66-183 72-217 (354)
346 2uvk_A YJHT; unknown function, 93.9 0.91 3.1E-05 39.8 12.7 51 80-130 67-128 (357)
347 3qhy_B Beta-lactamase inhibito 93.7 2.8 9.6E-05 35.3 23.1 240 68-344 25-265 (282)
348 3s25_A Hypothetical 7-bladed b 93.6 3 0.0001 35.5 23.4 232 87-360 35-290 (302)
349 3q6k_A 43.2 kDa salivary prote 93.3 4 0.00014 35.9 22.3 168 183-351 123-342 (381)
350 4hvt_A Ritya.17583.B, post-pro 92.0 9.4 0.00032 37.0 24.2 96 266-362 318-429 (711)
351 2wg3_C Hedgehog-interacting pr 91.2 8.7 0.0003 35.0 25.7 29 111-139 15-44 (463)
352 2g8s_A Glucose/sorbosone dehyd 90.9 7.7 0.00026 33.8 23.3 67 205-271 272-348 (353)
353 3qhy_B Beta-lactamase inhibito 90.6 6.9 0.00024 32.8 22.3 226 110-367 24-250 (282)
354 2wg3_C Hedgehog-interacting pr 88.5 14 0.00048 33.6 14.5 109 246-354 14-160 (463)
355 3zwu_A Alkaline phosphatase PH 87.9 2.2 7.5E-05 40.1 9.0 60 291-350 477-548 (592)
356 3b7f_A Glycosyl hydrolase, BNR 87.7 14 0.00049 32.6 23.8 67 67-134 115-202 (394)
357 4a9v_A PHOX; hydrolase, beta-p 85.9 4.2 0.00014 37.8 9.4 61 290-350 476-548 (592)
358 1sqj_A OXG-RCBH, oligoxylogluc 85.3 30 0.001 34.1 24.6 62 66-128 14-83 (789)
359 3b7f_A Glycosyl hydrolase, BNR 85.3 19 0.00066 31.8 28.5 51 80-131 23-77 (394)
360 4gq2_M Nucleoporin NUP120; bet 84.2 28 0.00096 35.2 15.4 36 111-146 237-272 (950)
361 4gq2_M Nucleoporin NUP120; bet 84.1 19 0.00065 36.4 14.1 37 291-327 237-273 (950)
362 3kci_A Probable E3 ubiquitin-p 78.1 36 0.0012 30.0 22.1 245 69-320 55-345 (389)
363 4d9s_A UVB-resistance protein 76.9 40 0.0014 29.9 23.2 160 68-235 69-253 (406)
364 3mvd_K Regulator of chromosome 75.5 44 0.0015 29.8 33.4 249 110-368 75-379 (423)
365 3no0_A DNA gyrase subunit A; D 75.1 35 0.0012 28.4 17.8 157 203-363 67-246 (276)
366 3kci_A Probable E3 ubiquitin-p 73.1 49 0.0017 29.1 20.9 160 205-367 106-297 (389)
367 3zwu_A Alkaline phosphatase PH 65.1 26 0.00088 33.0 8.6 59 68-127 477-548 (592)
368 3q6k_A 43.2 kDa salivary prote 64.8 73 0.0025 28.0 21.1 175 66-277 86-306 (381)
369 4fhn_B Nucleoporin NUP120; pro 64.3 10 0.00034 39.3 6.3 37 334-370 239-275 (1139)
370 4hvt_A Ritya.17583.B, post-pro 64.2 1.1E+02 0.0037 29.7 18.7 190 171-365 137-383 (711)
371 4a9v_A PHOX; hydrolase, beta-p 63.9 39 0.0013 31.6 9.3 61 67-128 476-549 (592)
372 3mez_B Mannose-specific lectin 61.5 38 0.0013 23.5 7.4 26 336-363 59-84 (113)
373 1sqj_A OXG-RCBH, oligoxylogluc 60.2 1.4E+02 0.0046 29.5 21.9 28 109-136 14-42 (789)
374 4fhn_B Nucleoporin NUP120; pro 59.1 22 0.00075 36.9 7.7 37 291-327 239-275 (1139)
375 3f7f_A Nucleoporin NUP120; nuc 58.1 18 0.00061 34.8 6.2 38 67-107 222-259 (729)
376 2cn3_A Xyloglucanase, beta-1,4 57.5 1.4E+02 0.0049 29.0 25.3 61 67-128 23-91 (737)
377 4d9s_A UVB-resistance protein 56.9 1E+02 0.0036 27.2 31.0 287 66-368 15-362 (406)
378 3uc1_A DNA gyrase subunit A; D 53.3 1.1E+02 0.0037 26.2 22.3 148 216-364 109-280 (327)
379 3f7f_A Nucleoporin NUP120; nuc 53.3 14 0.00046 35.6 4.5 37 334-372 223-259 (729)
380 1q47_A Semaphorin 3A; beta pro 46.1 1.2E+02 0.004 27.9 9.4 68 291-358 405-487 (495)
381 1suu_A DNA gyrase subunit A; t 44.8 1.4E+02 0.0049 25.2 22.2 107 258-364 114-232 (312)
382 3al9_A Plexin-A2; beta-propell 44.3 48 0.0016 30.8 6.7 68 291-358 401-476 (539)
383 3of7_A Regulator of chromosome 44.2 1.8E+02 0.0063 26.3 23.9 198 164-368 148-410 (473)
384 1zvt_A Topoisomerase IV subuni 42.8 1.4E+02 0.0047 24.4 14.5 145 217-364 3-164 (256)
385 1wp5_A Topoisomerase IV; broke 41.6 1.6E+02 0.0056 25.0 16.3 146 217-363 6-174 (323)
386 3no0_A DNA gyrase subunit A; D 37.7 1.7E+02 0.0059 24.1 16.6 108 257-364 79-197 (276)
387 1zi0_A DNA gyrase subunit A; b 34.3 2.1E+02 0.0072 24.1 26.5 146 217-363 110-277 (307)
388 4gz8_A Semaphorin-3A; multi-do 33.4 3.3E+02 0.011 26.1 10.6 67 292-358 414-495 (667)
389 1b2p_A Protein (lectin); manno 31.4 1.3E+02 0.0045 20.9 6.6 24 337-362 64-87 (119)
390 2cn3_A Xyloglucanase, beta-1,4 30.2 3.9E+02 0.013 25.9 26.0 105 248-355 385-499 (737)
391 1wp5_A Topoisomerase IV; broke 29.2 2.7E+02 0.0091 23.7 23.0 159 204-363 92-277 (323)
392 1q47_A Semaphorin 3A; beta pro 28.1 1.8E+02 0.006 26.7 7.6 68 68-135 405-487 (495)
393 3ol2_B Plexin-B1; beta-propell 26.9 1.4E+02 0.0048 27.6 6.7 69 291-359 388-462 (528)
394 3mvd_K Regulator of chromosome 26.3 3.4E+02 0.011 23.9 27.2 239 68-320 76-374 (423)
395 3nvq_A Semaphorin-7A; beta-pro 24.6 2.3E+02 0.0078 26.7 7.6 57 303-359 382-445 (590)
396 3nvq_A Semaphorin-7A; beta-pro 24.1 2.6E+02 0.0089 26.3 7.9 57 80-136 381-445 (590)
397 3a0c_A Mannose/sialic acid-bin 21.6 2E+02 0.0068 19.6 7.2 56 293-362 22-77 (110)
398 3of7_A Regulator of chromosome 21.5 4.5E+02 0.015 23.7 25.9 121 110-235 148-285 (473)
399 1ukf_A Avirulence protein AVRP 21.5 1.1E+02 0.0036 23.5 3.9 39 64-102 116-154 (188)
400 1suu_A DNA gyrase subunit A; t 20.5 3.8E+02 0.013 22.5 25.6 61 76-138 6-75 (312)
401 1zi0_A DNA gyrase subunit A; b 20.4 3.8E+02 0.013 22.5 18.2 146 217-363 4-176 (307)
402 3mez_B Mannose-specific lectin 20.3 2.1E+02 0.0073 19.5 9.8 26 293-320 59-84 (113)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.5e-47 Score=348.70 Aligned_cols=289 Identities=21% Similarity=0.377 Sum_probs=256.0
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
+....+.+|.++|++++|+|++ .+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++|
T Consensus 99 ~~~~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 99 PEKYALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177 (410)
T ss_dssp SCSCEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred CceEeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 3456789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
|+.++.....+ ..+...+.+++|+|++.++++++ +.|++||+.++..+..+.+|...|.++.++|+
T Consensus 178 d~~~~~~~~~~------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 245 (410)
T 1vyh_C 178 DFQGFECIRTM------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245 (410)
T ss_dssp ETTSSCEEECC------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred eCCCCceeEEE------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence 99876443322 23456789999999999999886 67999999999999999999999999999998
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCC-------------------CceEEeecCCCeEEEEe
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPME-------------------PMNFTAANEDCNCYSYD 274 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~i~~~d 274 (452)
+ .++++|+.||.|++||+++......+. +...+.++.|+|++ ..++++++.|+.|++||
T Consensus 246 g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 246 G-TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred C-CEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 8 799999999999999999887776664 34567889999874 44799999999999999
Q ss_pred CCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 275 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
+++.... ..+.+|...|++++|+|+|++|++|+.||.|++||+.+++....+.. |...|++++|+|++.+|++|+.||
T Consensus 325 ~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 325 VSTGMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp TTTTEEE-EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC-CSSCEEEEEECSSSSCEEEEETTS
T ss_pred CCCCceE-EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 9876543 45568999999999999999999999999999999999888777654 457899999999999999999999
Q ss_pred cEEEeec
Q 012994 355 NLRLWKA 361 (452)
Q Consensus 355 ~i~iw~~ 361 (452)
.|++|++
T Consensus 403 ~i~vW~~ 409 (410)
T 1vyh_C 403 TVKVWEC 409 (410)
T ss_dssp EEEEEC-
T ss_pred cEEEEeC
Confidence 9999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.4e-46 Score=328.53 Aligned_cols=291 Identities=19% Similarity=0.343 Sum_probs=251.3
Q ss_pred cccccccccccccEEEEEeCCCC---cceEEEeeCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEccCCCeEEEEeCC
Q 012994 56 RPFIGALDGHRDGISCMAKNPNY---LKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~---~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~l~s~~~d 130 (452)
+.+...+.+|.+.|++++|+|++ ..+|+||+.|++|+|||+.+++. ...+.+|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 34456788999999999999852 26899999999999999987654 45688999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
++|++||+.+++.. .........+.+++|+|++.++++++ +.+.+|++.+++....+..+...+.+
T Consensus 102 ~~i~lWd~~~~~~~------------~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLENGKQI------------KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILS 169 (321)
T ss_dssp SEEEEEETTTTEEE------------EEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEE
T ss_pred CcEEEEECCCCCEE------------EEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEE
Confidence 99999999876422 22333455778899999999999987 67999999999999999989999999
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG 287 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 287 (452)
++|+|++ .+|++|+.||.|++||+++++.+..+.. ...+.+++|+|++. ++++++.|+.|++||++.... ...+.+
T Consensus 170 ~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~dg~i~iwd~~~~~~-~~~~~~ 246 (321)
T 3ow8_A 170 IAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANL-AGTLSG 246 (321)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC-EEEEECTTSCEEEEETTTCCE-EEEECC
T ss_pred EEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC-EEEEEcCCCeEEEEECCCcce-eEEEcC
Confidence 9999998 7999999999999999999887777653 45678999999876 588899999999999987544 345668
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
|...|.+++|+|++++|++|+.||.|++||+.+++++..+.. |...|++++|+|++++|++++.||.|++||..
T Consensus 247 h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 247 HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD-HQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999999999999999999998887754 45889999999999999999999999999964
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.5e-45 Score=328.84 Aligned_cols=293 Identities=19% Similarity=0.287 Sum_probs=250.9
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
.+...+|.||.+.|++++|+|++ ++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 34557889999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
|++.+..... ........+...+.++.|++++.++.++. +.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 124 w~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 124 YNLKTREGNV--------RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp EETTTCSBSC--------EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EECccCCCcc--------eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 9997653110 01122345667888999998887554443 68999999999999999999999999999998
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee-eCcccce
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH-MGHESAV 292 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~v 292 (452)
+ .++++|+.||.|++||++++.....+. +...+.+++|+|++. .+++++.|+.+++||++......... ..+...|
T Consensus 196 ~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 196 T-RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp S-SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred C-CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 8 799999999999999999988777765 345688999999876 48889999999999998765443322 1234579
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
++++|+|+|++|++|+.||.|++||+.++.....+. +|...|++++|+|+|.+|++|+.||.|+|||
T Consensus 274 ~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999988877765 4558999999999999999999999999997
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.3e-45 Score=320.52 Aligned_cols=291 Identities=16% Similarity=0.284 Sum_probs=250.3
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.+..+|.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 4567899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC-cceecccCCCceEEEEECC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ-PINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~ 213 (452)
|+.+++ .......+...+.+++++|++.++++++ +.|++||+.++. ....+.+|...|.+++|+|
T Consensus 83 d~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 83 NYNTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp ETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred ECCCCc------------EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 998773 2334445678899999999999999887 679999998874 4567888999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccC-CCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPM-EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
.++.+|++|+.||.|++||++.......+... ..+..+.+.|. ...++++++.|+.|++||+++... ...+.+|..
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~-~~~~~~h~~ 229 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMS 229 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE-EEEEECCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc-ceeeCCCCC
Confidence 76689999999999999999888777666533 45677888875 345789999999999999987543 445668999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC--EEEEeeCCCcEEEeeccc
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~ 363 (452)
.|.+++|+|++++|++|+.||.|++||+.+++....+..+ ...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 9999999999999999999999999999999988877654 47899999999875 577777664 67887754
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-45 Score=331.85 Aligned_cols=291 Identities=16% Similarity=0.194 Sum_probs=239.0
Q ss_pred cccccccEEEEEeCCCCcceEEEeeC------CCcEEEEeCCCCce----EEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSM------DGDIRLWDIANRRT----VCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~------dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
..+|.+.|++++|+||| .+|++|+. |+.|++|+..++.. .....+|...|++++|+|++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 35799999999999999 99999997 78899999877643 334457899999999999975 56778899
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
+|+|||+.+++.... .......+...|.+++|+|++.++++++ +.|++||+.+++.+..+..|...|.++
T Consensus 116 ~v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v 187 (357)
T 4g56_B 116 AVELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCV 187 (357)
T ss_dssp CEEEC--------CC--------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 999999987754221 1223335677899999999999999886 679999999999999999999999999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
+|+|++..++++++.||.|++||+++++....+.. ...+.+++|+|++..++++++.++.|++||+++.... ..+.
T Consensus 188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-~~~~ 266 (357)
T 4g56_B 188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-QTSA 266 (357)
T ss_dssp EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-EEEC
T ss_pred EEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe-EEEe
Confidence 99999877899999999999999998887765543 3456789999999999999999999999999886544 4566
Q ss_pred CcccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeecccc
Q 012994 287 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
+|...|++++|+|++ ++|++|+.||.|+|||+++++.+..+ .|...|++++|+| ++.+|++++.||.|++|++.+.
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 899999999999987 57999999999999999998877654 5668999999998 8999999999999999999764
Q ss_pred c
Q 012994 365 E 365 (452)
Q Consensus 365 ~ 365 (452)
.
T Consensus 345 ~ 345 (357)
T 4g56_B 345 G 345 (357)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.6e-45 Score=332.17 Aligned_cols=307 Identities=19% Similarity=0.278 Sum_probs=251.6
Q ss_pred hhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 53 IFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 53 ~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
.....+..+|.||.+.|++++|+|++ ++|++|+.||+|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.
T Consensus 53 ~~~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~ 131 (380)
T 3iz6_a 53 PTDLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSA 131 (380)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSC
T ss_pred cceeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCc
Confidence 33445667899999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC-CeEEEeC--CeEEEEeCCCCCcceec-----ccCCC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSF-----QWGTD 204 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~-----~~~~~ 204 (452)
+++||+.+....... .........+...+.++.|.|++ ..+++++ +.|++||+.+++.+..+ .+|..
T Consensus 132 v~iw~~~~~~~~~~~-----~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 132 CSIFNLSSQADRDGN-----MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CEEEECCCCSSCCCS-----STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred EEEEECCCCccccCC-----ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 999999764321100 00111223456677888888864 4577765 57999999999988766 56889
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
.|.++.|++.++++|++|+.||.|++||++.. .....+. +...+.+++|+|++.. +++++.|+.+++||+++.....
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEE
Confidence 99999999866689999999999999999844 4555544 4567899999998764 8899999999999998765443
Q ss_pred eeee------CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee---ccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 283 CVHM------GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY---HTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 283 ~~~~------~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
.... .+...|++++|+|+|++|++|+.||.|++||+..++....+ ...|.+.|++++|+|+|++|++|+.|
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 3221 12235899999999999999999999999999988776554 24567899999999999999999999
Q ss_pred CcEEEeecccccc
Q 012994 354 TNLRLWKAKASEQ 366 (452)
Q Consensus 354 g~i~iw~~~~~~~ 366 (452)
|.|+||++...+.
T Consensus 366 ~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 366 KNLKIWAFSGHRK 378 (380)
T ss_dssp SCEEEEECCSSSS
T ss_pred CCEEEEecCCCcc
Confidence 9999999986543
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-44 Score=322.55 Aligned_cols=295 Identities=21% Similarity=0.316 Sum_probs=253.5
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
....+|.||.+.|+|++|+|++ .+|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++++.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 4567889999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
++........ .........+...+.++.|++++..+++++ +.|++||+.+++.+..+.+|...|.+++++|.
T Consensus 134 ~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 134 PLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp ECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred EEeccccccc------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 9865432110 112334556788899999999999888876 67999999999999999999999999999885
Q ss_pred C-CcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee-eCcccc
Q 012994 215 E-PNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH-MGHESA 291 (452)
Q Consensus 215 ~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~ 291 (452)
. +++|++|+.||.|++||+++++....+. +...+.+++|+|++. .+++++.|+.+++||++......... ..+...
T Consensus 208 ~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 208 ETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp SSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 3 3799999999999999999988877765 355688999999875 58899999999999998765433222 123457
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 292 VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 292 v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
+.+++|+|+|++|++|+.|+.|++||+.++..+..+. +|...|++++|+|+|++|++|+.||.|+||+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 8999999999999999999999999999988776664 4558999999999999999999999999996
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.3e-45 Score=325.63 Aligned_cols=289 Identities=14% Similarity=0.150 Sum_probs=237.4
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-----------CceEEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----------RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
.+|...|.+++|+||| .+|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||
T Consensus 27 ~~~~~~v~~~~fs~dG-~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSDG-ALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTTS-CEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCCC-CEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 4577889999999999 8888877 77888887321 11112223467789999999985 788999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
+|+|||+.+++.... .......+...|.+++|+|++.++++++ +.|++||+.+++.+..+.+|...|.++
T Consensus 104 ~v~lWd~~~~~~~~~--------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 104 AVELWELDENETLIV--------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEEEEECTTSSCEE--------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred EEEEEeccCCCceeE--------eeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEE
Confidence 999999987743211 1112235678899999999999999987 579999999999999999999999999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
+|+|++..+|++|+.||.|++||+++++....+.. ...+.+++|+|++..++++++.|+.|++||+++.... ..+.
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-~~~~ 254 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-LSSA 254 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC-EEEE
T ss_pred EecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE-EEEc
Confidence 99999878999999999999999999988776543 3346789999999999999999999999999876544 4567
Q ss_pred CcccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEEeeCCCcEEEeecccc
Q 012994 287 GHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 364 (452)
+|...|++++|+|+| ++|++|+.||+|+|||+.+++.... .+|...|++++|+|+++ +|++++.||+|++|++.+.
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~--~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS--QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE--cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999999999998 5799999999999999999876543 45668999999999886 5779999999999999865
Q ss_pred c
Q 012994 365 E 365 (452)
Q Consensus 365 ~ 365 (452)
.
T Consensus 333 ~ 333 (344)
T 4gqb_B 333 P 333 (344)
T ss_dssp -
T ss_pred C
Confidence 4
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-44 Score=349.22 Aligned_cols=331 Identities=16% Similarity=0.220 Sum_probs=262.3
Q ss_pred HHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE
Q 012994 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (452)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 127 (452)
+.+|+ .+.....+.+|.+.|++++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|++++|+++
T Consensus 131 v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 131 VFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 45565 3556678999999999999999984469999999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcce--------
Q 012994 128 GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN-------- 197 (452)
Q Consensus 128 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~-------- 197 (452)
+.|++|++||+.++.....+... ......+...+.+++|+|++.++++++ +.|++||+.+++.+.
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~-----~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~ 283 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDD-----SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 283 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCT-----TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG
T ss_pred ECCCcEEEEECCCCcEeeeeccc-----cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCc
Confidence 99999999999877543322110 000113567899999999999999886 579999998765433
Q ss_pred -----------------------------------ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE
Q 012994 198 -----------------------------------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242 (452)
Q Consensus 198 -----------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (452)
.+.+|...|.+++|+|++ .+|++++.||.|++||+.++.....+
T Consensus 284 ~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg-~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG-KTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp GGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEECS
T ss_pred cceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCceeeec
Confidence 334688899999999988 79999999999999998764321110
Q ss_pred --------------------------------------------------------------------------------
Q 012994 243 -------------------------------------------------------------------------------- 242 (452)
Q Consensus 243 -------------------------------------------------------------------------------- 242 (452)
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence
Q ss_pred ---EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 243 ---IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.....+.+++|+|++. ++++++.|+.|++||+...........+|...|++++|+|+|++|++++.|+.|++||+.
T Consensus 443 ~~~~~~~~v~~va~spdg~-~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~ 521 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQ-FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521 (611)
T ss_dssp EEEECSSCEEEEEECTTSC-EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGG
T ss_pred eeeecCCCceEEEEeCCCC-EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcC
Confidence 0012235678888876 588899999999999876432211225799999999999999999999999999999998
Q ss_pred C-Cceeee-eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc--ccCChhhhhhhHHHHHHHHhhcc-Cccc
Q 012994 320 G-GRSREI-YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL--GVLHPREQRKHAYHEAVKNRYKH-LPEI 394 (452)
Q Consensus 320 ~-~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 394 (452)
+ ++.... ....|...|++++|+|||++|++|+.|++|++|++.++... ..+ .+| ...|
T Consensus 522 ~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-----------------~~h~~~~v 584 (611)
T 1nr0_A 522 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-----------------GAHAMSSV 584 (611)
T ss_dssp GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-----------------TSSTTSCE
T ss_pred CCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-----------------ccCcccCe
Confidence 7 555443 23347789999999999999999999999999999876532 121 256 6788
Q ss_pred cccccCCCCC
Q 012994 395 KRIVRHRHLP 404 (452)
Q Consensus 395 ~~~~~~~~~p 404 (452)
..++|.|...
T Consensus 585 ~~v~fs~d~~ 594 (611)
T 1nr0_A 585 NSVIWLNETT 594 (611)
T ss_dssp EEEEEEETTE
T ss_pred eEEEEcCCCE
Confidence 9999988654
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.8e-43 Score=313.73 Aligned_cols=291 Identities=18% Similarity=0.314 Sum_probs=242.9
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-----CceEEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-----RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-----~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
.+..+|.||.+.|++++|+|++.++|++|+.|++|++||+.. +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 456688999999999999997658999999999999999864 245677899999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
+|++||+.+++. ......+...+.++++++++.++++++ +.|++||+. +..+..+.+|...|.++
T Consensus 88 ~v~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 88 TLRLWDVATGET------------YQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEEETTTTEE------------EEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE
T ss_pred EEEEEECCCCCe------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEE
Confidence 999999987632 233445678899999999999999987 579999996 55677888899999999
Q ss_pred EECCCC-----CcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 210 RFNPAE-----PNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 210 ~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
.+.|.. ...+++++.|+.|++||+++......+. +...+.+++|+|++. ++++++.|+.|++||+........
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE
Confidence 999853 2489999999999999998877665554 456778999999876 488899999999999987655443
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc-------CCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT-------KRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
. .+...|.+++|+|++.+|++++.+ .+++|++..+.....+.. .+...+.+++|+|||++|++|+.||.|
T Consensus 234 ~--~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i 310 (319)
T 3frx_A 234 L--SAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310 (319)
T ss_dssp E--ECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCE
T ss_pred e--cCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceE
Confidence 3 234689999999999999988855 599999987765544321 234679999999999999999999999
Q ss_pred EEeecccc
Q 012994 357 RLWKAKAS 364 (452)
Q Consensus 357 ~iw~~~~~ 364 (452)
+||++.++
T Consensus 311 ~vWd~~t~ 318 (319)
T 3frx_A 311 RVWQVMTA 318 (319)
T ss_dssp EEEEEEEC
T ss_pred EEEEEeec
Confidence 99999875
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-43 Score=317.37 Aligned_cols=300 Identities=22% Similarity=0.330 Sum_probs=239.3
Q ss_pred ccccccccccc-cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE---EeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 57 PFIGALDGHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC---QYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 57 ~~~~~l~~h~~-~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
.++.++.+|.+ .|.+++|+|++ .+||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|++
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 46678899998 99999999999 999999999999999998876432 23689999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc---ceecccCCCceE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP---INSFQWGTDTVI 207 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~---~~~~~~~~~~i~ 207 (452)
|++||+..+... .......+...+.+++|+|++.++++++ +.|++||+.++.. +..+..|...|.
T Consensus 85 v~iw~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 85 TCIWKKNQDDFE----------CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEEEECCC-EE----------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EEEEEccCCCeE----------EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 999998755210 1122334567899999999999999986 6799999987643 456778999999
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccCCCCce--EEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc---
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRMSSPAR--KVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--- 281 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--- 281 (452)
+++|+|++ .+|++|+.|+.|++||++...... .+. +...+.+++|+|++. .+++++.|+.|++|+.......
T Consensus 155 ~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s~D~~v~iW~~~~~~~~~~~ 232 (345)
T 3fm0_A 155 HVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ-RLASCSDDRTVRIWRQYLPGNEQGV 232 (345)
T ss_dssp EEEECSSS-SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEEECTTCTTCC
T ss_pred EEEECCCC-CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCC-EEEEEeCCCeEEEeccccCCCCccc
Confidence 99999988 789999999999999998765332 222 345678999999876 4889999999999996432211
Q ss_pred -----------ceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--------eeeeccCCcCcEEEEEEc
Q 012994 282 -----------KCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--------REIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 282 -----------~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~s 341 (452)
..... .|...|.+++|+|++..|++++.|+.|++|+...+.. .......|...|++++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 312 (345)
T 3fm0_A 233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN 312 (345)
T ss_dssp CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC
T ss_pred eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe
Confidence 11222 3888999999999999999999999999999876531 112234677899999999
Q ss_pred CCC-CEEEEeeCCCcEEEeeccccccccc
Q 012994 342 CDA-SYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 342 ~~~-~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
|++ .+|++|+.||.|++|++.+++.+..
T Consensus 313 p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 313 PKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 987 5999999999999999998876543
No 12
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-42 Score=309.19 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=234.8
Q ss_pred ccccccccccccEEEEEe-----CC-CCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCeeEEEEccCCCe
Q 012994 57 PFIGALDGHRDGISCMAK-----NP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAVRGLTVSTDGRI 123 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~-----~~-~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~ 123 (452)
.+...|.||.+.|++++| ++ ++ .+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~-~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDS-PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCC-CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCC-CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 456788999999999999 76 76 89999999999999998753 456678899999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCccee--c
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS--F 199 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~--~ 199 (452)
|++|+.|++|++||+.++.. ......+...+.+++|+|++.++++++ +.|++||+........ .
T Consensus 91 l~s~s~D~~v~lwd~~~~~~------------~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTT------------YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp EEEEETTSEEEEEETTSSCE------------EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred EEEEcCCCcEEEEECCCCcE------------EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecc
Confidence 99999999999999987632 233445678899999999999999886 6799999974332221 2
Q ss_pred ccCCCceEEEEECCCCC---------cEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCe
Q 012994 200 QWGTDTVISVRFNPAEP---------NVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
..|...|.+++|+|++. .++++++.||.|++||.. ......+. +...+.+++|+|++.. +++++.|+.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~-l~sgs~dg~ 236 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKY-IATGGKDKK 236 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSE-EEEEETTCE
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCE-EEEEcCCCe
Confidence 36788999999999762 589999999999999943 33333333 3456789999998865 888999999
Q ss_pred EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--eec----------cCCcCcEEE
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYH----------TKRMQRVFC 337 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~----------~~~~~~v~~ 337 (452)
+++||+.........+ .+...|.+++|+|++.+++++ .|+.|++||+.++.... .+. ..|...|++
T Consensus 237 v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 314 (343)
T 2xzm_R 237 LLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTS 314 (343)
T ss_dssp EEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEE
T ss_pred EEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEE
Confidence 9999996554444333 345579999999999887755 57889999998776543 221 145578999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 338 VKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 338 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
++|+|+|++|++|+.||.|++|++.++.
T Consensus 315 ~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 315 LAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEECCCCCeEEEecCCceEEEEEEEccC
Confidence 9999999999999999999999998764
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-42 Score=302.83 Aligned_cols=289 Identities=20% Similarity=0.295 Sum_probs=246.7
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.+..++.+|.+.|++++|+|++ ++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 4566789999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
|+.++.. ......+...+.++.|+|++.++++++ +.|++||+.+++.+..+..|...|.+++|+|+
T Consensus 93 d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
T 4ery_A 93 DVSSGKC------------LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160 (312)
T ss_dssp ETTTCCE------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ECCCCcE------------EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCC
Confidence 9987632 223344667889999999999999886 67999999999999999999999999999998
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
+ .++++++.||.|++||+++.+....+.. ...+..++|+|++.. +++++.++.+++||+++.... ..+.+|...+
T Consensus 161 ~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~ 237 (312)
T 4ery_A 161 G-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY-ILAATLDNTLKLWDYSKGKCL-KTYTGHKNEK 237 (312)
T ss_dssp S-SEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEE-EEECSSCCSS
T ss_pred C-CEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEE-EEEEecCCce
Confidence 8 7899999999999999998877666543 335678899998865 777889999999999876543 3344555432
Q ss_pred ---EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEee--CCCcEEEeecc
Q 012994 293 ---MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS--DDTNLRLWKAK 362 (452)
Q Consensus 293 ---~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 362 (452)
......+++.+|++|+.||.|++||+.+++....+.. |...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 238 ~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 238 YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc-cCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 2233346889999999999999999999988877754 448899999999999999987 69999999864
No 14
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.3e-42 Score=331.80 Aligned_cols=293 Identities=14% Similarity=0.216 Sum_probs=245.6
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
..+.+.+.+++|+|+| ++|++++ ++.|++||+.+++....+.+|...|++++|+|+|++||+|+.||+|+|||+.++.
T Consensus 15 ~~~~g~~~~~~~spdg-~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~ 92 (611)
T 1nr0_A 15 RTARGTAVVLGNTPAG-DKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 92 (611)
T ss_dssp CCCTTCCCCCEECTTS-SEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred CcccCceeEEeeCCCC-CEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCc
Confidence 4567889999999999 8999987 5699999999999999999999999999999999999999999999999986542
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC------eEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA------QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
. ........+...+.+++|+|++..+++++. .+.+|| .++....+.+|...|.+++|+|+++
T Consensus 93 ~----------~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~ 160 (611)
T 1nr0_A 93 H----------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRP 160 (611)
T ss_dssp C----------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSS
T ss_pred c----------eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCC
Confidence 1 111233456778999999999999988763 356665 6677788899999999999999986
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee------Ccc
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM------GHE 289 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------~~~ 289 (452)
..|++|+.|++|++||....+....+. +...+.+++|+|++. ++++++.|+.+++||..+......... +|.
T Consensus 161 ~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 679999999999999988776655554 345678999999876 588999999999999877654433322 799
Q ss_pred cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee------------------------------------------
Q 012994 290 SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY------------------------------------------ 327 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~------------------------------------------ 327 (452)
..|.+++|+|+|++|++++.|++|++||+.+++....+
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~ 319 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV 319 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence 99999999999999999999999999999987654332
Q ss_pred ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 328 HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 328 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
..+|...|++++|+|+|++|++++.||.|++||+.+++....+
T Consensus 320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence 1346678999999999999999999999999999988776544
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-42 Score=307.30 Aligned_cols=297 Identities=16% Similarity=0.211 Sum_probs=227.4
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--ceEEEe-ec-CCCCeeEEEEccCCCeEEEEeCCC
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQY-SG-HQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
..++..|.+|.+.|.+++|+|+ +|++|+.||+|++||+.++ +....+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4567789999999999999985 7999999999999999875 345555 34 999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCC-eeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC----CcceecccCCC
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEP-LAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS----QPINSFQWGTD 204 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~----~~~~~~~~~~~ 204 (452)
+|++||+....... ..... .....+...+.+++|+|++.++++++ +.|++||+... +.+..+..|..
T Consensus 81 ~v~iw~~~~~~~~~------~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 154 (330)
T 2hes_X 81 TVSIWAKEESADRT------FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154 (330)
T ss_dssp CEEEEEC-------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred cEEEEEcccCcCcc------ccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence 99999986432100 00111 22334677899999999999999986 67999999532 34667888999
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCC--CCceEEE-eecccceEEEccCCC-ceEEeecCCCeEEEEeCCCcc-
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMS--SPARKVI-MRTKSNSISWNPMEP-MNFTAANEDCNCYSYDSRKLD- 279 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~d~~~~~- 279 (452)
.|.+++|+|++ .+|++|+.|+.|++||+... ..+..+. +...+.++.|+|++. ..+++++.|+.+++||+....
T Consensus 155 ~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~ 233 (330)
T 2hes_X 155 DVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE 233 (330)
T ss_dssp CEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECT
T ss_pred ceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCc
Confidence 99999999988 79999999999999998765 3333333 345678899999853 568899999999999987542
Q ss_pred ------ccceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--eeeeccCCcC-cEEEEEEcC--CCCEE
Q 012994 280 ------EAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--REIYHTKRMQ-RVFCVKFSC--DASYV 347 (452)
Q Consensus 280 ------~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~-~v~~~~~s~--~~~~l 347 (452)
.....+. .|...|.+++|++++ +|++++.||.|++||..++.. .......|.. .|++++|+| ++++|
T Consensus 234 ~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 234 DDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTIL 312 (330)
T ss_dssp TSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCE
T ss_pred cccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEE
Confidence 1122223 388999999999765 899999999999999987742 2233234444 899999999 78999
Q ss_pred EEeeCCCcEEEeeccc
Q 012994 348 ISGSDDTNLRLWKAKA 363 (452)
Q Consensus 348 ~s~~~dg~i~iw~~~~ 363 (452)
++|+.||.|+||++..
T Consensus 313 as~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTSEEEEEEC--
T ss_pred EEecCCCcEEEEEecc
Confidence 9999999999999864
No 16
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.2e-41 Score=302.03 Aligned_cols=293 Identities=17% Similarity=0.298 Sum_probs=240.4
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-----eEEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----TVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
.+..+|+||++.|++|+|+|+++++|+||+.||+|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 45678999999999999999855899999999999999987653 4667889999999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcc-eecccCCCceEE
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI-NSFQWGTDTVIS 208 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~-~~~~~~~~~i~~ 208 (452)
.|++|+..... ...........+....+++++..+++++ +.+.+||....... .....|...+..
T Consensus 109 ~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~ 176 (340)
T 4aow_A 109 TLRLWDLTTGT------------TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176 (340)
T ss_dssp EEEEEETTTTE------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEE
T ss_pred cceEEeecccc------------eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccc
Confidence 99999997652 3333444556777888999999998876 67999998766543 445668899999
Q ss_pred EEECCCCC-cEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 209 VRFNPAEP-NVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 209 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
++|++++. .++++++.|+.|++||+++......+. +...+.+++|+|++. ++++++.|+.+++||++........
T Consensus 177 ~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~Dg~i~iwd~~~~~~~~~~-- 253 (340)
T 4aow_A 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLWDLNEGKHLYTL-- 253 (340)
T ss_dssp EEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTCEEEEEETTTTEEEEEE--
T ss_pred eEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEEeccCceeeee--
Confidence 99998753 467899999999999999888776665 345678999999876 5788999999999999986654433
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec--------cCCcCcEEEEEEcCCCCEEEEeeCCCcEEE
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--------TKRMQRVFCVKFSCDASYVISGSDDTNLRL 358 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~i 358 (452)
.+...|.+++|+|++.++ +++.|+.|++||++++.....+. ..|...|++++|+|||++|++|+.||.|+|
T Consensus 254 ~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~i 332 (340)
T 4aow_A 254 DGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332 (340)
T ss_dssp ECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 345689999999987654 56679999999999877655442 345678999999999999999999999999
Q ss_pred eeccccc
Q 012994 359 WKAKASE 365 (452)
Q Consensus 359 w~~~~~~ 365 (452)
||+.+|+
T Consensus 333 W~~~tGt 339 (340)
T 4aow_A 333 WQVTIGT 339 (340)
T ss_dssp EEEEC--
T ss_pred EeCCCcC
Confidence 9999986
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-41 Score=309.68 Aligned_cols=284 Identities=16% Similarity=0.325 Sum_probs=236.8
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC------------------CeeEEEEccCCCeEE
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG------------------AVRGLTVSTDGRILV 125 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~~~~~~l~ 125 (452)
+|.+.|+|++|+|+| .+||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 62 ~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 699999999999999 8999987 78999999999998887765542 499999999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCC
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~ 203 (452)
+|+.||+|++||+.+++.. .....+...+.+++|+|++..+++++ +.+++||+.+++....+. +.
T Consensus 140 s~~~d~~i~iwd~~~~~~~------------~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~ 206 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIV------------MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IE 206 (393)
T ss_dssp EEETTSCEEEEETTTTEEE------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred EEcCCCeEEEEECCCCcEE------------EEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence 9999999999999776322 22334567899999999999999886 579999999998777665 45
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--------eecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
..+.+++|+|.++.++++|+.||.|++||++++.....+. +...+.+++|+|++.. +++++.|+.+++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWNL 285 (393)
T ss_dssp SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEEC
T ss_pred CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEEC
Confidence 7799999999555899999999999999999887666552 3456789999998865 788999999999998
Q ss_pred CCccc-----------cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC--
Q 012994 276 RKLDE-----------AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-- 342 (452)
Q Consensus 276 ~~~~~-----------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-- 342 (452)
+.... ....+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+.. |...|.+++|++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~-h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVANGS 364 (393)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSC
T ss_pred CCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC-CCCCEEEEEecCCc
Confidence 76422 2335568999999999999999999999999999999999988777654 558899999986
Q ss_pred ----CCCEEEEeeCCCcEEEeecccc
Q 012994 343 ----DASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 343 ----~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
++++|++|+.||.|+||++...
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998754
No 18
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=302.31 Aligned_cols=294 Identities=17% Similarity=0.203 Sum_probs=253.1
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
..|.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 26 ~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 4589999999999999998 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-------CeEEEEeCCCCCc-----------ceeccc
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-------AQVDIWNHNRSQP-----------INSFQW 201 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~i~d~~~~~~-----------~~~~~~ 201 (452)
++ ...........+.++.|++++.++++++ +.+.+||+..... ...+..
T Consensus 105 ~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 171 (369)
T 3zwl_B 105 NG-------------QCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171 (369)
T ss_dssp TC-------------CEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC
T ss_pred CC-------------cEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC
Confidence 76 3444455778899999999999998875 5799999887643 334444
Q ss_pred CCC--ceEEEEECCCCCcEEEEEecCCeEEEEEccC-CCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCC
Q 012994 202 GTD--TVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 202 ~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 277 (452)
+.. .+.+++|+|++ .++++++.||.|++||+++ ......+. ....+.+++|+|++.. +++++.++.+++||+++
T Consensus 172 ~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 172 HEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTY-FITSSRDTNSFLVDVST 249 (369)
T ss_dssp CTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred CcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCE-EEEecCCceEEEEECCC
Confidence 555 89999999988 7899999999999999998 55555555 3567789999998765 77888999999999988
Q ss_pred ccccceeeeCcccceEEEEEcCCCCEEEEEeCCC--------------eEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 278 LDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR--------------TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
........ +...+.+++|+|+++++++++.++ .+++||+.+++....+.. |...|++++|+|+
T Consensus 250 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 250 LQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG-HFGPLNTVAISPQ 326 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC-CSSCEEEEEECTT
T ss_pred Cceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec-ccCcEEEEEECCC
Confidence 66554443 678899999999999999999988 899999999988877754 4488999999999
Q ss_pred CCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 344 ASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 344 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
+++|++++.||.|++|++..+.....+..
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 355 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEKSYFDFKYDV 355 (369)
T ss_dssp SSEEEEEETTSEEEEEEECHHHHTCCCHH
T ss_pred CCEEEEEcCCCeEEEEECccccchhHHHH
Confidence 99999999999999999998877666544
No 19
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.1e-41 Score=305.23 Aligned_cols=302 Identities=18% Similarity=0.239 Sum_probs=247.0
Q ss_pred hhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEcc-CC
Q 012994 45 LTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVST-DG 121 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~-~~ 121 (452)
+....++.....++...+.+|.+.|++++|+|++..+|++|+.||.|++||+.+++....+. +|...|.+++|+| ++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 52 LQEPFIRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp HHHHHHHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE
T ss_pred hhccccccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC
Confidence 34455666667778889999999999999999976799999999999999999888777665 6999999999999 78
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE---ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcc
Q 012994 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV---WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI 196 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~ 196 (452)
++|++++.||.|++||+.... ...... +...+.+++|++++.++++++ +.|.+||+ +++.+
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~ 197 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSV-------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEI 197 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCE-------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEE
T ss_pred CEEEEEeCCCEEEEEECCCCc-------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEE
Confidence 999999999999999997431 111111 235689999999999999987 67999999 57788
Q ss_pred eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC----CCCceEEEeecccceEEEccCCCceEEeecCCCeEEE
Q 012994 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM----SSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYS 272 (452)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (452)
..+..|...|.+++|+|++..++++++.||.|++||+++ ......+.+...+.+++|+|.....+++++.|+.+++
T Consensus 198 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 889999999999999999855999999999999999998 5556666677788999999944455788899999999
Q ss_pred EeCCCccccceeee------Ccc----------cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC-CcCcE
Q 012994 273 YDSRKLDEAKCVHM------GHE----------SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-RMQRV 335 (452)
Q Consensus 273 ~d~~~~~~~~~~~~------~~~----------~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v 335 (452)
||+++......... .|. ..+..++|+|+|++ +|+.||.|++||+.+++.+..+..+ +...+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred EECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 99987665443321 122 33445667777766 7789999999999999988877654 34667
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
..++|+|++++|++|+ ||.|++||+++
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 7889999999999997 99999999874
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-41 Score=302.72 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=245.4
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce---EEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT---VCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
...+|.+.|++++|+|++ ++|++++ ||.|++||+.+++. +..+. +|...|.+++|+|++++|++++.||.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 345799999999999998 9999998 99999999987653 33333 79999999999999999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
||+.++.. ........+...+.++++++++.++++++ +.+.+||+.+++.+..+..|...+.+++|+|
T Consensus 124 ~d~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 124 WDLAAPTP----------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EECCCC------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EECCCCCc----------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECC
Confidence 99976631 01223334566789999999999988886 6799999999999999999999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
++ .++++++.||.|++||+++.+....+.....+.+++|+|++.. +++++.++.+++||...... .....|...|.
T Consensus 194 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~ 269 (337)
T 1gxr_A 194 DG-TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDK--YQLHLHESCVL 269 (337)
T ss_dssp TS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSE-EEEEETTSCEEEEETTSSCE--EEECCCSSCEE
T ss_pred CC-CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCCe--EEEcCCcccee
Confidence 88 7899999999999999999988888888888999999998865 67788899999999987653 34568899999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
+++|+|++++|++++.||.|++||+.+++..... .+...+++++|+|++++|++++.||.|++|++
T Consensus 270 ~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999999999998877443 34578999999999999999999999999996
No 21
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.3e-40 Score=293.35 Aligned_cols=275 Identities=18% Similarity=0.260 Sum_probs=236.0
Q ss_pred ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
+....+.+|.+.|++++|+|++++|++++.||+|++||+.++.. ......+...+.++.|++++.+++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~ 71 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE------------VRSIQVTETPVRAGKFIARKNWII 71 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE------------EEEEECCSSCEEEEEEEGGGTEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce------------eEEeeccCCcEEEEEEeCCCCEEE
Confidence 45677899999999999999999999999999999999987632 223344567889999999999999
Q ss_pred EeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceE-EE-eecccceEEEcc
Q 012994 180 TAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK-VI-MRTKSNSISWNP 255 (452)
Q Consensus 180 ~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~ 255 (452)
+++ +.|++||+.+++.+..+..|...|.+++|+|++ .+|++|+.||+|++||+++...... +. +...+.+++|+|
T Consensus 72 s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence 887 579999999999999999999999999999988 7899999999999999988754433 32 345678999999
Q ss_pred CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC
Q 012994 256 MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP--TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ 333 (452)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 333 (452)
.+...+++++.|+.|++||++..........+|...+..++|+| ++.+|++|+.||.|++||+++++.+..+.. |..
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~-h~~ 229 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMS 229 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC-CSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC-CCC
Confidence 88888999999999999999887766666667878899999987 778999999999999999999988877754 458
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCCh
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPK 405 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 405 (452)
.|++++|+|++++|++|+.||.|++||+.+++.+..+. .+...+.+++++|....
T Consensus 230 ~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN-----------------VGLERSWCIATHPTGRK 284 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-----------------CSSSSEEEEEECTTCGG
T ss_pred CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc-----------------CCCccEEEEEECCCCCc
Confidence 89999999999999999999999999999998887764 34556677887776554
No 22
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-41 Score=324.87 Aligned_cols=333 Identities=22% Similarity=0.385 Sum_probs=273.3
Q ss_pred CchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCe
Q 012994 33 RPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v 112 (452)
.|....+........+++|+. ..+.+..+.+|...|++++|+|++ ..|++++.|+.|++||. +++.+..+.+|...|
T Consensus 230 s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~-~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v 306 (577)
T 2ymu_A 230 SPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDG-QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 306 (577)
T ss_dssp CTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEET-TSCEEEEECCCSSCE
T ss_pred CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCe
Confidence 333333333334445677774 566778899999999999999998 99999999999999996 567788899999999
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeC
Q 012994 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (452)
.+++|+|++++|++++.||+|++||+.... ......+...+.+++++|++..+++++ +.+++||.
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-------------~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~ 373 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRNGQH-------------LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 373 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSCE-------------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCCe-------------eEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC
Confidence 999999999999999999999999975432 223334567889999999999999886 57999995
Q ss_pred CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCe
Q 012994 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
+++.+..+..|...|.+++|+|++ .+|++++.|+.|++||.. ++....+. +...+.+++|+|++.. +++++.|+.
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~ 449 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKT 449 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSE-EEEEETTSE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCE-EEEEcCCCE
Confidence 567788888999999999999988 789999999999999964 44444443 4556788999998765 778899999
Q ss_pred EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
+++||... .....+.+|...|++++|+|+|++|++++.|+.|++||. +++....+. .|...|++++|+||+++|++
T Consensus 450 v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s 525 (577)
T 2ymu_A 450 VKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIAS 525 (577)
T ss_dssp EEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEE
T ss_pred EEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEE
Confidence 99999753 344566789999999999999999999999999999996 466666654 45588999999999999999
Q ss_pred eeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 350 GSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 350 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
++.||.|++||. +++++..+ .+|...|..++|.|+-..++
T Consensus 526 ~~~dg~v~lwd~-~~~~~~~~-----------------~~h~~~v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 526 ASDDKTVKLWNR-NGQLLQTL-----------------TGHSSSVWGVAFSPDGQTIA 565 (577)
T ss_dssp EETTSEEEEECT-TSCEEEEE-----------------ECCSSCEEEEEECTTSSCEE
T ss_pred EECcCEEEEEeC-CCCEEEEE-----------------cCCCCCEEEEEEcCCCCEEE
Confidence 999999999996 56665544 36888999999999866444
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.6e-41 Score=321.92 Aligned_cols=304 Identities=23% Similarity=0.406 Sum_probs=251.3
Q ss_pred CchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCe
Q 012994 33 RPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v 112 (452)
.|.............+++|+. ....+..+.+|.+.|.+++|+|++ .+|++++.||.|++||.. +..+..+.+|...|
T Consensus 271 ~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 271 RPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN-GQHLQTLTGHSSSV 347 (577)
T ss_dssp CTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCE
Confidence 333333333333444567764 456778899999999999999998 999999999999999975 45567788999999
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeC
Q 012994 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (452)
.+++|+|++++|++++.||.|++||.... .......+...+.+++++|++.++++++ +.|++||.
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~~-------------~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNRNGQ-------------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTCC-------------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcCCCC-------------EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 99999999999999999999999996321 2223344677899999999999999876 57999995
Q ss_pred CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCe
Q 012994 191 NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
+++.+..+..|...|.+++|+|++ .+|++++.|+.|++||... +....+. +...+.+++|+|++.. +++++.|+.
T Consensus 415 -~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~-las~~~d~~ 490 (577)
T 2ymu_A 415 -NGQLLQTLTGHSSSVWGVAFSPDD-QTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKT 490 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCE-EEEEETTSE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCC-CEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCE
Confidence 567788889999999999999988 7899999999999999743 4444443 4567789999998775 778899999
Q ss_pred EEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 270 CYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
|++||.. ......+.+|...|++++|+|+|++|++++.||.|++||. +++.+..+. +|...|++++|+|||++|+|
T Consensus 491 i~iw~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 491 VKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp EEEEETT--SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEE
T ss_pred EEEEcCC--CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEE
Confidence 9999964 3445567799999999999999999999999999999996 466666654 45689999999999999999
Q ss_pred eeCCCcEEEee
Q 012994 350 GSDDTNLRLWK 360 (452)
Q Consensus 350 ~~~dg~i~iw~ 360 (452)
++.||.|++||
T Consensus 567 ~~~D~~i~~Wd 577 (577)
T 2ymu_A 567 ASSDKTVKLWN 577 (577)
T ss_dssp EETTSCEEEEC
T ss_pred EeCCCEEEEeC
Confidence 99999999997
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.4e-41 Score=306.42 Aligned_cols=294 Identities=15% Similarity=0.207 Sum_probs=246.2
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc------eEEEeecCCCCeeEEEEccC----C---Ce
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR------TVCQYSGHQGAVRGLTVSTD----G---RI 123 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~----~---~~ 123 (452)
.....+.+|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + ++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 34567889999999999998 689999999999999999887 78888999999999999999 9 99
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCC-CeeEEEe-----cCCeeeeeec----CCCCe-EEEeC--CeEEEEeC
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSE-PLAVYVW-----KNSFWAVDHQ----WEGDL-FATAG--AQVDIWNH 190 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~----~~~~~-~~~~~--~~i~i~d~ 190 (452)
|++++.||.|++||+.++.... .. ......+ ...+.+++|+ +++.. +++++ +.|.+||+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETK--------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTC--------CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred EEEEcCCCCEEEEEccCCcccc--------cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 9999999999999998764300 00 1122223 3789999999 99998 88875 67999999
Q ss_pred CC------CCcce-----ec-------ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------e
Q 012994 191 NR------SQPIN-----SF-------QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------R 245 (452)
Q Consensus 191 ~~------~~~~~-----~~-------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~ 245 (452)
.+ ++.+. .+ ..|...|.+++|+|++ ++++++.||.|++||+++.+....+.. .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 98 77766 66 4478899999999987 889999999999999999888888876 6
Q ss_pred cccceEEEccCCCceEEeecCC---CeEEEEeCCCccccceeeeC-------------cccceEEEEEcCCCCEEEEEeC
Q 012994 246 TKSNSISWNPMEPMNFTAANED---CNCYSYDSRKLDEAKCVHMG-------------HESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~~~~~~~~-------------~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
..+.+++|+|++.. +++++.+ +.+++||+++..... .+.+ |...|.+++|+|++++|++++.
T Consensus 234 ~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 234 NSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIG-SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp CCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCEEE-EECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred CccceEEECCCCCE-EEEEecCCCCceEEEEECCCCcccc-eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 77899999998764 6777788 999999998765443 3445 8999999999999999999999
Q ss_pred CCeEEEEECCCCceeeeec------cC--------------CcCcEEEEEEcCCC----------CEEEEeeCCCcEEEe
Q 012994 310 DRTIRIFQYNGGRSREIYH------TK--------------RMQRVFCVKFSCDA----------SYVISGSDDTNLRLW 359 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~~~~s~~~----------~~l~s~~~dg~i~iw 359 (452)
||.|++||+.+++.+..+. .+ |...|++++|+|++ ++|++++.||.|++|
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw 391 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWF 391 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEE
Confidence 9999999999998887776 32 16889999999998 799999999999999
Q ss_pred eccccc
Q 012994 360 KAKASE 365 (452)
Q Consensus 360 ~~~~~~ 365 (452)
++.+|+
T Consensus 392 ~~~~g~ 397 (397)
T 1sq9_A 392 REAGGK 397 (397)
T ss_dssp EEEC--
T ss_pred EcCCCC
Confidence 998764
No 25
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.8e-40 Score=298.72 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=237.0
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeC---CCcEEEEeCCCCceEEEe-ecCCCCeeEEEEccC---CCeEEEEeCCC
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRRTVCQY-SGHQGAVRGLTVSTD---GRILVSCGTDC 131 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~---~~~l~s~~~dg 131 (452)
...+.+|.+.|++++|+|++..++++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34558899999999999998556667776 999999999988765443 379999999999998 69999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeee------eecCCCCeEEEeC--CeEEEEeCCCCC-cceecccC
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV------DHQWEGDLFATAG--AQVDIWNHNRSQ-PINSFQWG 202 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~i~i~d~~~~~-~~~~~~~~ 202 (452)
.|++||+.++.. .......+...+.++ ++++++.++++++ +.+++||+.+++ ++..+..+
T Consensus 91 ~i~iwd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 159 (357)
T 3i2n_A 91 NLHIWNLEAPEM-----------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPV 159 (357)
T ss_dssp CEEEECTTSCSS-----------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred eEEEEeCCCCCc-----------cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecccc
Confidence 999999987641 122233455667777 5678999999886 679999999987 67777665
Q ss_pred CC----ceEEEE----ECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccC--CCceEEeecCCCeEEE
Q 012994 203 TD----TVISVR----FNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPM--EPMNFTAANEDCNCYS 272 (452)
Q Consensus 203 ~~----~i~~~~----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~ 272 (452)
.+ .+.+++ |+|++ .++++++.||.|++||+++............+.++.|+|. ....+++++.++.+++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 160 QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 44 788888 67777 7999999999999999999888777777888999999994 3455888899999999
Q ss_pred EeCCCcccccee----eeCcccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce-------------------eeeec
Q 012994 273 YDSRKLDEAKCV----HMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGGRS-------------------REIYH 328 (452)
Q Consensus 273 ~d~~~~~~~~~~----~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~~-------------------~~~~~ 328 (452)
||++........ ..+|...|++++|+|+++ +|++|+.||.|++||+..+.. +..+
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 317 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV- 317 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-
Confidence 999876544332 238999999999999998 899999999999999986532 2223
Q ss_pred cCCcCcEEEEEEcCCCCEEE-EeeCCCcEEEeecccccc
Q 012994 329 TKRMQRVFCVKFSCDASYVI-SGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~~ 366 (452)
..|...|++++|+|++++|+ +++.||.|++|++.+.+.
T Consensus 318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 34558899999999999998 899999999999987654
No 26
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3e-41 Score=312.83 Aligned_cols=295 Identities=17% Similarity=0.243 Sum_probs=229.8
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEE
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVK 134 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~ 134 (452)
+.....+|...|+||+|+|.++++||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++++|++|+.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 34456789999999999997658999999999999999987754 344568999999999998 788999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+||+..+........ ......+.++++++++.++++++ +.|.+||++ ++.+..+..|...|.+++|+
T Consensus 191 iwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~ 259 (435)
T 4e54_B 191 LQDFKGNILRVFASS----------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALN 259 (435)
T ss_dssp EEETTSCEEEEEECC----------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEEC
T ss_pred EeeccCCceeEEecc----------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeec
Confidence 999965422100000 01123467889999999999987 679999986 45677888999999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEE----EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKV----IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
|+++.++++|+.|+.|++||+++......+ .+...+.+++|+|++.. +++++.|+.|++||........... .|
T Consensus 260 p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~~~~~~~-~~ 337 (435)
T 4e54_B 260 PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQWDCPLGLI-PH 337 (435)
T ss_dssp TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSSSSSEEEEC-CC
T ss_pred CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCCCccceEEe-cc
Confidence 998789999999999999999887654433 24556788999998765 7888999999999998765443322 22
Q ss_pred c------cceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCceeeeeccCCcCcEEEE-EEcCCCCEEEE
Q 012994 289 E------SAVMDIDYSPTGREFVTGS------------YDRTIRIFQYNGGRSREIYHTKRMQRVFCV-KFSCDASYVIS 349 (452)
Q Consensus 289 ~------~~v~~~~~s~~g~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s 349 (452)
. ..+..+.|+|++.++++++ .++.|++||..+++.+..+..+|...|.++ +|+|+|++|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 338 PHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred cccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 1 1233456777777766654 235799999999998888777777888887 69999999998
Q ss_pred eeCCCcEEEeecccccc
Q 012994 350 GSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 350 ~~~dg~i~iw~~~~~~~ 366 (452)
|+ |+.|+||++++++.
T Consensus 418 g~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 418 AM-GYHILIWSQQEART 433 (435)
T ss_dssp EC-SSEEEECCCC----
T ss_pred Ec-CCcEEEEECCcCee
Confidence 76 78999999998865
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-41 Score=310.24 Aligned_cols=327 Identities=12% Similarity=0.208 Sum_probs=261.2
Q ss_pred CCCCchhh-hhhhHhhhhHHHhhhh----hccc------ccccccc----------ccccEEEEEeCCCCcceEEEeeCC
Q 012994 30 PNLRPQEK-AVEYVRALTAAKLEKI----FARP------FIGALDG----------HRDGISCMAKNPNYLKGFFSGSMD 88 (452)
Q Consensus 30 ~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~------~~~~l~~----------h~~~V~~~~~~~~~~~~l~tg~~d 88 (452)
..++|... .+........+.+|++ ..+. ....+.. |.+.|++++|+|++ .+|++|+.|
T Consensus 51 ~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d 129 (425)
T 1r5m_A 51 STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG-NSIVTGVEN 129 (425)
T ss_dssp EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS-SEEEEEETT
T ss_pred EEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC-CEEEEEeCC
Confidence 34666666 5555555566788888 5554 2333332 78899999999998 999999999
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC---eeEEEecCC
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP---LAVYVWKNS 165 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 165 (452)
|.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++............... .........
T Consensus 130 g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (425)
T 1r5m_A 130 GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSL 208 (425)
T ss_dssp SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCC
T ss_pred CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcce
Confidence 9999999 678888899999999999999999999999999999999999877554433222111100 011111222
Q ss_pred eeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-
Q 012994 166 FWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI- 243 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 243 (452)
+.++.+++++.+++.+. +.+.+||+.+++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++......+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 287 (425)
T 1r5m_A 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYG 287 (425)
T ss_dssp BSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCSEEECC
T ss_pred eeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccceEecC
Confidence 78889998876555444 689999999999999999999999999999988 699999999999999999988887775
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR- 322 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~- 322 (452)
+...+.++.|+|++ .+++++.++.+++||++.... ......|...|.+++|+|++++|++++.||.|++||+.++.
T Consensus 288 ~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~ 364 (425)
T 1r5m_A 288 HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS 364 (425)
T ss_dssp CSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC
T ss_pred CCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc
Confidence 45677899999988 889999999999999987654 34455788999999999999999999999999999999877
Q ss_pred -------------------eeeeeccCCcC-cEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 323 -------------------SREIYHTKRMQ-RVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 323 -------------------~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.+..+..+... .|++++|+|++++|++++.||.|++|+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 66666554433 89999999999999999999999999985
No 28
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.2e-40 Score=287.98 Aligned_cols=253 Identities=21% Similarity=0.321 Sum_probs=207.7
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC--CceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEE
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN--RRTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVK 134 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~ 134 (452)
+..+.+|.+.|++++|+|+| ++||+|+.|++|+|||+.+ .+.+..+.+|.++|.+++|++ ++++|++|+.||+|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 45678999999999999999 9999999999999999974 367788999999999999986 488999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
+||+.++.. ..+..+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~--------------------------------------------------~~~~~~~~h~~~v~~v~~~p~ 110 (297)
T 2pm7_B 81 IWKEENGRW--------------------------------------------------SQIAVHAVHSASVNSVQWAPH 110 (297)
T ss_dssp EEEBSSSCB--------------------------------------------------CCCEEECCCSSCEEEEEECCG
T ss_pred EEEcCCCce--------------------------------------------------EEEEEeecCCCceeEEEeCcC
Confidence 999865421 123344567889999999997
Q ss_pred C-CcEEEEEecCCeEEEEEccCCCCc--eEE-EeecccceEEEccCC------------CceEEeecCCCeEEEEeCCCc
Q 012994 215 E-PNVLATTASDRSITLYDLRMSSPA--RKV-IMRTKSNSISWNPME------------PMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 215 ~-~~~l~~~~~dg~i~i~d~~~~~~~--~~~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~~i~~~d~~~~ 278 (452)
. +.+|++++.||.|++||++..... ..+ .+...+.+++|+|+. ...+++++.|+.|++||.+..
T Consensus 111 ~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~ 190 (297)
T 2pm7_B 111 EYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD 190 (297)
T ss_dssp GGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT
T ss_pred CCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence 2 378999999999999999876432 222 234567889999974 457999999999999998765
Q ss_pred cc---cceeeeCcccceEEEEEcCCC---CEEEEEeCCCeEEEEECCCCce---eeee-ccCCcCcEEEEEEcCCCCEEE
Q 012994 279 DE---AKCVHMGHESAVMDIDYSPTG---REFVTGSYDRTIRIFQYNGGRS---REIY-HTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 279 ~~---~~~~~~~~~~~v~~~~~s~~g---~~l~s~~~dg~i~iwd~~~~~~---~~~~-~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.. ....+.+|...|.+++|+|++ .+|++|+.|++|++||+++... ...+ ...+...|.+++|+|++++|+
T Consensus 191 ~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 191 AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLA 270 (297)
T ss_dssp TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEE
T ss_pred CceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEE
Confidence 42 334567899999999999985 8999999999999999987431 1122 134557899999999999999
Q ss_pred EeeCCCcEEEeecc
Q 012994 349 SGSDDTNLRLWKAK 362 (452)
Q Consensus 349 s~~~dg~i~iw~~~ 362 (452)
+++.||.|++|+..
T Consensus 271 s~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 271 LSGGDNKVTLWKEN 284 (297)
T ss_dssp EEETTSCEEEEEEC
T ss_pred EEcCCCcEEEEEEC
Confidence 99999999999976
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-41 Score=310.40 Aligned_cols=296 Identities=15% Similarity=0.252 Sum_probs=249.3
Q ss_pred ccccEEEEEeCCCCcceEEEe----------eCCCcEEEEeCCCCc---eEEEeecCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSG----------SMDGDIRLWDIANRR---TVCQYSGHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg----------~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
+...|.+++|+|++..+|++| +.||.|++||+.++. .+..+ .|...|++++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 445789999999984499999 899999999998875 33334 5889999999999999999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CCeEEEeC--CeEEEEeCCCCC------cce---ec
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQ------PIN---SF 199 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~------~~~---~~ 199 (452)
.|++||+....... ........+...+.+++|+|+ +.++++++ +.|++||+.+++ ... .+
T Consensus 90 ~v~vw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 90 SLELYSTNEANNAI--------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp CEEEECCSSTTSCC--------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred eEEEeecccccccc--------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc
Confidence 99999997631100 112222345678999999998 88888886 679999999886 332 23
Q ss_pred ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------ecccceEEEccCCCceEEeecCCC---e
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------RTKSNSISWNPMEPMNFTAANEDC---N 269 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~ 269 (452)
..|...|.+++|+|+++.++++++.||.|++||+++.+....+.. ...+.+++|+|++..++++++.++ .
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 568889999999999668999999999999999999887777765 456789999999988999999998 9
Q ss_pred EEEEeCCCccccceeee-CcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC-CE
Q 012994 270 CYSYDSRKLDEAKCVHM-GHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SY 346 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~ 346 (452)
+++||++........+. +|...|++++|+| ++++|++++.||.|++||+.+++.+..+..+ ...|++++|+|++ .+
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEAPDL 320 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTCTTE
T ss_pred EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCCCCE
Confidence 99999998766666676 8999999999999 9999999999999999999999888777544 4789999999999 89
Q ss_pred EEEeeCCCcEEEeecccccccccC
Q 012994 347 VISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 347 l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
|++++.||.|++|++.++......
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC
T ss_pred EEEEecCCcEEEEEccCCCCCccc
Confidence 999999999999999988765443
No 30
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-40 Score=290.37 Aligned_cols=294 Identities=17% Similarity=0.239 Sum_probs=244.2
Q ss_pred ccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 012994 55 ARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (452)
Q Consensus 55 ~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 134 (452)
..++...+.+|.+.|++++| |++ .+|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34677889999999999999 887 8999999999999999999998999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
+|++....... .......+...+.++.+ ++.++++++ +.+.+|| .++....+..|...+.++.|.
T Consensus 85 ~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 85 GVPLFATSGED---------PLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVV 151 (313)
T ss_dssp EEETTCCTTSC---------C-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEE
T ss_pred EEEeeecCCCC---------cccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEc
Confidence 99997653211 12223345667888888 466676665 6899999 677788888899999999999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
|.++..+++++.||.|++||. ......+. ....+.+++|+|++. +++++.++.+++||.+.... ...+.+|..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~ 226 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH--FISCSNDGLIKLVDMHTGDV-LRTYEGHES 226 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE--EEEEETTSEEEEEETTTCCE-EEEEECCSS
T ss_pred cCCCCEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe--EEEccCCCeEEEEECCchhh-hhhhhcCCc
Confidence 854589999999999999993 33333333 455678999999887 88999999999999987654 345568999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.|++++|+|++ .|++++.||.|++||+.+++....+..+ ...|++++|+|+++ +++++.||.|++|++.+++.+...
T Consensus 227 ~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 227 FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 99999999999 6899999999999999999888777554 47899999999998 567999999999999998876544
Q ss_pred C
Q 012994 371 H 371 (452)
Q Consensus 371 ~ 371 (452)
.
T Consensus 304 ~ 304 (313)
T 3odt_A 304 E 304 (313)
T ss_dssp -
T ss_pred h
Confidence 3
No 31
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=313.86 Aligned_cols=315 Identities=15% Similarity=0.243 Sum_probs=255.1
Q ss_pred hhhHHHhhhhhccc---cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC----CceEEEeecCCCCeeEEE
Q 012994 44 ALTAAKLEKIFARP---FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----RRTVCQYSGHQGAVRGLT 116 (452)
Q Consensus 44 ~~~~~~~~~~~~~~---~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~ 116 (452)
....+++|+..... .+..+ .|...|++++|+|++ .+|++|+.||.|++||+.+ .+.+..+.+|...|.+++
T Consensus 43 ~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 43 TDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEE
T ss_pred CCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEE
Confidence 34457788876554 33333 589999999999998 9999999999999999987 357888899999999999
Q ss_pred EccC-CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CCeEEEeC--CeEEEEeCCC
Q 012994 117 VSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNR 192 (452)
Q Consensus 117 ~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~ 192 (452)
|+|+ +++|++++.||.|++||+.++......... ........+...+.+++|+++ +.++++++ +.|++||+.+
T Consensus 121 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 121 FNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTP---LTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp ECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCC---BCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred EcCCCCCEEEEEcCCCeEEEEECCCCccccccccc---cccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 9998 899999999999999999877521100000 000111234567899999999 77888876 6799999999
Q ss_pred CCcceecccC------CCceEEEEECCCCCcEEEEEecCC---eEEEEEccCC-CCceEEE--eecccceEEEccCCCce
Q 012994 193 SQPINSFQWG------TDTVISVRFNPAEPNVLATTASDR---SITLYDLRMS-SPARKVI--MRTKSNSISWNPMEPMN 260 (452)
Q Consensus 193 ~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~ 260 (452)
++.+..+..+ ...+.+++|+|++..++++++.|+ .|++||+++. .....+. +...+.+++|+|.+..+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence 9988888776 788999999999878999999999 9999999986 4555554 55678899999966777
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCceeeeecc----------
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG-REFVTGSYDRTIRIFQYNGGRSREIYHT---------- 329 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------- 329 (452)
+++++.|+.+++||+++... ...+.+|...|++++|+|++ .+|++++.||.|++||+.++........
T Consensus 278 l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 356 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESET 356 (416)
T ss_dssp EEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------
T ss_pred EEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcc
Confidence 99999999999999987644 44556899999999999999 8999999999999999987654322100
Q ss_pred ------------------------CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 330 ------------------------KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 330 ------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
.+..++++++|+|+|++|++++.||.|+||++.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 357 DFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 13467789999999999999999999999999864
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.7e-39 Score=318.90 Aligned_cols=289 Identities=17% Similarity=0.280 Sum_probs=237.6
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-----ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-----RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
....+.+|++.|++++|+|++..+|+||+.||+|++||+.+. .....+.+|...|.+++|+|++++|++|+.||+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345689999999999999986689999999999999998763 345678899999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCccee---cccCCCceE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS---FQWGTDTVI 207 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~---~~~~~~~i~ 207 (452)
|++||+.++.. ......+...+.+++|++++..+++++ +.|++||......... ...|...|.
T Consensus 454 v~vwd~~~~~~------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~ 521 (694)
T 3dm0_A 454 LRLWDLAAGVS------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS 521 (694)
T ss_dssp EEEEETTTTEE------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE
T ss_pred EEEEECCCCcc------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE
Confidence 99999987632 233455778899999999999999886 5799999865543322 245788999
Q ss_pred EEEECCCC-CcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee
Q 012994 208 SVRFNPAE-PNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 208 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 285 (452)
+++|+|++ ...+++|+.||.|++||+++......+. +...+.+++|+|++. ++++++.|+.|++||+++.......
T Consensus 522 ~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~- 599 (694)
T 3dm0_A 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSL- 599 (694)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECC-
T ss_pred EEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEe-
Confidence 99999976 3579999999999999999887776665 345678999999876 5888999999999999886554332
Q ss_pred eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC------------------cCcEEEEEEcCCCCEE
Q 012994 286 MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR------------------MQRVFCVKFSCDASYV 347 (452)
Q Consensus 286 ~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------~~~v~~~~~s~~~~~l 347 (452)
.+...|.+++|+|++.+|++++ |+.|++||+.++..+..+.... ...+++++|+|+|++|
T Consensus 600 -~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 600 -EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp -BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred -cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 3456899999999998888776 5669999999988766543211 1237899999999999
Q ss_pred EEeeCCCcEEEeecc
Q 012994 348 ISGSDDTNLRLWKAK 362 (452)
Q Consensus 348 ~s~~~dg~i~iw~~~ 362 (452)
++|+.||.|+||++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999985
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.1e-40 Score=303.18 Aligned_cols=273 Identities=19% Similarity=0.275 Sum_probs=236.0
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (452)
++|.............+++|+..++.+...+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+++.+..+.+|...
T Consensus 116 ~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~ 194 (410)
T 1vyh_C 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQGFECIRTMHGHDHN 194 (410)
T ss_dssp ECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTSSCEEECCCCCSSC
T ss_pred EcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC
Confidence 33444444444456678899999999999999999999999999998 99999999999999999999999999999999
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
|.+++|+|++++|++|+.|++|++||+.++.. ......+...+.++.+++++.++++++ +.|++||
T Consensus 195 V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~------------~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTCCE------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE------------EEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999999999999999987642 223344567789999999999999886 6799999
Q ss_pred CCCCCcceecccCCCceEEEEECCCC-------------------CcEEEEEecCCeEEEEEccCCCCceEEEe-ecccc
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAE-------------------PNVLATTASDRSITLYDLRMSSPARKVIM-RTKSN 249 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~ 249 (452)
+.+++....+..|...|.+++|+|++ +.+|++|+.||.|++||++++..+..+.. ...+.
T Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 99999999999999999999999963 35899999999999999999888777764 45578
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
++.|+|++.. +++++.|+.|++||..+... ...+.+|...|++++|+|++.+|++|+.||.|++|+++
T Consensus 343 ~v~~~~~g~~-l~s~s~D~~i~vwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKF-ILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSC-EEEEETTTEEEEECCTTSCC-CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCE-EEEEeCCCeEEEEECCCCce-EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999998876 67889999999999977544 44566899999999999999999999999999999863
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.1e-40 Score=298.03 Aligned_cols=287 Identities=11% Similarity=0.147 Sum_probs=236.2
Q ss_pred ccccccccEEEEEeCCC---CcceEEEeeCCCcEEEEeCCCCceEEEeec-----CCCCeeEEEEccC----CCeEEEEe
Q 012994 61 ALDGHRDGISCMAKNPN---YLKGFFSGSMDGDIRLWDIANRRTVCQYSG-----HQGAVRGLTVSTD----GRILVSCG 128 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~---~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~----~~~l~s~~ 128 (452)
...+|.+.|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +.+|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34689999999999984 436677777788999999998887766654 5578999999998 67999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeC--CeEEEEeCCCCCcceec---ccC
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSF---QWG 202 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~---~~~ 202 (452)
.||.|++||+.+++. ......+...+.+++|+| ++.++++++ +.|++||+.+++.+..+ ..|
T Consensus 93 ~dg~i~v~d~~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 160 (366)
T 3k26_A 93 SRGIIRIINPITMQC------------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH 160 (366)
T ss_dssp TTCEEEEECTTTCCE------------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC
T ss_pred CCCEEEEEEchhceE------------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc
Confidence 999999999987632 222334678899999999 899998886 67999999999988887 679
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-----------------------------eecccceEEE
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-----------------------------MRTKSNSISW 253 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------------------~~~~~~~~~~ 253 (452)
...|.+++|+|++ .+|++++.||.|++||+++.+....+. +...+.++.|
T Consensus 161 ~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 161 RDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred cCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 9999999999987 789999999999999998765432221 4456778888
Q ss_pred ccCCCceEEeecCCCeEEEEeCCCccc-------------cceeeeCcccceEEEEEcCC--CCEEEEEeCCCeEEEEEC
Q 012994 254 NPMEPMNFTAANEDCNCYSYDSRKLDE-------------AKCVHMGHESAVMDIDYSPT--GREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-------------~~~~~~~~~~~v~~~~~s~~--g~~l~s~~~dg~i~iwd~ 318 (452)
+ ...+++++.++.+++||.+.... ....+..|...|++++|+|+ +++|++|+.||.|++||+
T Consensus 240 ~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~ 316 (366)
T 3k26_A 240 L---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDL 316 (366)
T ss_dssp E---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEEC
T ss_pred c---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEEC
Confidence 8 44799999999999999887543 24455678889999999999 999999999999999999
Q ss_pred CCCceee----eeccC-CcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 319 NGGRSRE----IYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 319 ~~~~~~~----~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.+++... .+..+ +...|++++|+|++++|++++.||.|++||+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 317 EVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9876432 33322 258899999999999999999999999999853
No 35
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-40 Score=301.04 Aligned_cols=293 Identities=19% Similarity=0.255 Sum_probs=244.6
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeee
Q 012994 90 DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV 169 (452)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (452)
.+..|+..+......+.+|.+.|++++|+|++++|++|+.||+|++||+.++. .......+...+.++
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~------------~~~~~~~h~~~v~~~ 114 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ------------KTHAIKLHCPWVMEC 114 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE------------EEEEEECCCTTCCCC
T ss_pred cccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------cceEEecCCCCEEEE
Confidence 34457766777888999999999999999999999999999999999997763 223344556778999
Q ss_pred eecCCCCeEEEeC--CeEEEEeCCCCC-------cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce
Q 012994 170 DHQWEGDLFATAG--AQVDIWNHNRSQ-------PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR 240 (452)
Q Consensus 170 ~~~~~~~~~~~~~--~~i~i~d~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (452)
+|+|++.++++++ +.+++||+.+.. ....+.+|.+.+.++.|.|+++..|++|+.|++|++||++++..+.
T Consensus 115 ~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~ 194 (380)
T 3iz6_a 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRIS 194 (380)
T ss_dssp EECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEE
T ss_pred EECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEE
Confidence 9999999999987 579999987532 3456778999999999999877789999999999999999988776
Q ss_pred EEE------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEE
Q 012994 241 KVI------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIR 314 (452)
Q Consensus 241 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~ 314 (452)
.+. +...+.++.+++.+..++++++.|+.+++||++........+.+|...|++++|+|+|++|++|+.||.|+
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~ 274 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEE
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEE
Confidence 652 23456788898888888999999999999999876677777889999999999999999999999999999
Q ss_pred EEECCCCceeeeeccCC------cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhh
Q 012994 315 IFQYNGGRSREIYHTKR------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRY 388 (452)
Q Consensus 315 iwd~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (452)
+||++++..+..+.... ...|++++|+|+|++|++|+.||.|++||+.+++.+..+... ..
T Consensus 275 lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-------------~~ 341 (380)
T 3iz6_a 275 LFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTL-------------QN 341 (380)
T ss_dssp EEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCS-------------CS
T ss_pred EEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecc-------------cC
Confidence 99999998877664322 234899999999999999999999999999888776544211 02
Q ss_pred ccCccccccccCCCCChhh
Q 012994 389 KHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 389 ~~~~~~~~~~~~~~~p~~~ 407 (452)
+|...|.+++++|+-..++
T Consensus 342 ~h~~~v~~l~~s~dg~~l~ 360 (380)
T 3iz6_a 342 SHEGRISCLGLSSDGSALC 360 (380)
T ss_dssp SCCCCCCEEEECSSSSEEE
T ss_pred CCCCceEEEEECCCCCEEE
Confidence 6788899999999866544
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=7.8e-40 Score=297.59 Aligned_cols=291 Identities=15% Similarity=0.206 Sum_probs=239.0
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
+..|.++|++++|+|++ ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 45699999999999998 999999999999999999887 888899999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc----ceecccCCCceEEEEECC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP----INSFQWGTDTVISVRFNP 213 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~ 213 (452)
++.... ......+...+.+++|++++.++++++ +.+.+||+..+.. ......|...|.+++|+|
T Consensus 83 ~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 83 GRTWKP----------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp TTEEEE----------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred CCeeee----------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 653211 111233567889999999999999886 6799999998874 233356789999999999
Q ss_pred CCCcEEEEEecCCeEEEEEcc------------------CCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 214 AEPNVLATTASDRSITLYDLR------------------MSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
++ .+|++++.||.|++||++ .......+. +...+.+++|+|++. .+++++.++.+++||
T Consensus 153 ~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 153 NS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVSHDSTVCLAD 230 (372)
T ss_dssp TS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEETTTEEEEEE
T ss_pred CC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEeCCCEEEEEE
Confidence 87 789999999999999964 334444432 345678999999876 578888999999999
Q ss_pred CCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC--Cce-----------------------------
Q 012994 275 SRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG--GRS----------------------------- 323 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~--~~~----------------------------- 323 (452)
+++.... ..+..|..+|.+++|+|++.+|++| .||.|++|++.+ +..
T Consensus 231 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 231 ADKKMAV-ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGGTTEE-EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCCcee-EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 9876543 4455888899999999999988888 899999999987 421
Q ss_pred ---e------eeeccCCcCcEEEEEEc-CCC---CEEEEeeCCCcEEEeeccccccc
Q 012994 324 ---R------EIYHTKRMQRVFCVKFS-CDA---SYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 324 ---~------~~~~~~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
. ..+...|...|++++|+ ++| .+|++|+.||.|++|++.+++.+
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred cccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 0 22234677899999976 676 99999999999999999887654
No 37
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=292.13 Aligned_cols=316 Identities=19% Similarity=0.249 Sum_probs=250.3
Q ss_pred hhhHhhhhHHHhhhhhccccccccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCCceEEEee-----------
Q 012994 39 VEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYS----------- 106 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----------- 106 (452)
..........++|+.........+.+|.+.|++++|+| ++ ++|++|+.||.|++||+.+++....+.
T Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 94 (408)
T 4a11_B 16 LRLRRAESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDH 94 (408)
T ss_dssp HHHHHHHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTC
T ss_pred cceeeccCcceeeccccCcceeeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceEeccccccccccc
Confidence 34455666788999888888899999999999999999 88 999999999999999999876544443
Q ss_pred --cCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC---CeEEE
Q 012994 107 --GHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG---DLFAT 180 (452)
Q Consensus 107 --~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 180 (452)
+|...|.+++|+| ++.+|++++.||.|++||+.++ ...........+..+.+.+.+ .++++
T Consensus 95 ~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (408)
T 4a11_B 95 PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL-------------QTADVFNFEETVYSHHMSPVSTKHCLVAV 161 (408)
T ss_dssp TTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-------------EEEEEEECSSCEEEEEECSSCSSCCEEEE
T ss_pred cccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-------------ccceeccCCCceeeeEeecCCCCCcEEEE
Confidence 5999999999999 7789999999999999999876 344455567778888888754 47777
Q ss_pred eC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC-ceEE---------------
Q 012994 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP-ARKV--------------- 242 (452)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~--------------- 242 (452)
++ +.+.+||+.+++.+..+..|...|.+++|+|++..++++++.||.|++||++.... ...+
T Consensus 162 ~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (408)
T 4a11_B 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241 (408)
T ss_dssp EESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSS
T ss_pred EcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccc
Confidence 65 67999999999999999999999999999999866899999999999999987652 2222
Q ss_pred -EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee----CcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 243 -IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM----GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
.+...+.+++|+|++.. +++++.++.+++||+.+......... .....+........+..+++++.|+.|++||
T Consensus 242 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d 320 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYT 320 (408)
T ss_dssp CSCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEE
T ss_pred ccccCceeEEEEcCCCCE-EEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEE
Confidence 23456788999997654 77888999999999987654332211 1111222222333456677778899999999
Q ss_pred CCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 318 YNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+.+++.+..+.. |...|++++|+|++++|++|+.||.|++|++.+++.+...
T Consensus 321 ~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 321 VYSGEQITMLKG-HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTTCCEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred CcCCcceeeecc-CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 999998887754 4588999999999999999999999999999998876544
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-40 Score=296.65 Aligned_cols=309 Identities=13% Similarity=0.163 Sum_probs=223.3
Q ss_pred EEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC------CCcEEEEeCCCCCCC
Q 012994 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVATLT 144 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~ 144 (452)
.+.+.++ ++++.++.+.....|++.... ..+|...|++++|+|||++|++++. |+.|++|+..++...
T Consensus 10 g~d~g~~--~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 10 GVDLGTE--NLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred CCCCCcc--ceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 3445555 345555657788999976433 3579999999999999999999997 778999998766432
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCccee----cccCCCceEEEEECCCCCcEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINS----FQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~l 219 (452)
.. .......+...+.+++|+|++.+++++. +.|++||+.+++.... ...|...|.+++|+|++ ++|
T Consensus 84 ~~--------~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l 154 (357)
T 4g56_B 84 ES--------LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQA 154 (357)
T ss_dssp GG--------GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEE
T ss_pred ee--------EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEE
Confidence 11 2334556778899999999998887765 6899999998775432 34688999999999988 789
Q ss_pred EEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee-eeCcccceEEEEE
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV-HMGHESAVMDIDY 297 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~v~~~~~ 297 (452)
++|+.||.|++||+++++....+.. ...+.+++|+|++..++++++.|+.|++||+++....... ...|...+++++|
T Consensus 155 ~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 9999999999999999887777653 4567899999999999999999999999999886654433 3356778999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC-CEEEEeeCCCcEEEeecccccccccCChhhh
Q 012994 298 SPT-GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA-SYVISGSDDTNLRLWKAKASEQLGVLHPREQ 375 (452)
Q Consensus 298 s~~-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 375 (452)
+|+ +.+|++|+.|+.|++||+.+++....+.. +...|++++|+|++ ++|++|+.||.|+|||+.+++.+..+
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~----- 308 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL----- 308 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-----
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-----
Confidence 997 56899999999999999999988777654 44889999999987 57999999999999999998876543
Q ss_pred hhhHHHHHHHHhhccCccccccccCCCCChhhHHHHHH
Q 012994 376 RKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIYKAASL 413 (452)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 413 (452)
+|...|++++|+|..+..+.+++.+
T Consensus 309 -------------~H~~~V~~vafsP~d~~~l~s~s~D 333 (357)
T 4g56_B 309 -------------SHRDFVTGVAWSPLDHSKFTTVGWD 333 (357)
T ss_dssp -------------CCSSCEEEEEECSSSTTEEEEEETT
T ss_pred -------------CCCCCEEEEEEeCCCCCEEEEEcCC
Confidence 6788999999999766666555433
No 39
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-40 Score=305.56 Aligned_cols=301 Identities=13% Similarity=0.153 Sum_probs=238.9
Q ss_pred hhhhhcccccccc-ccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCC---Cc---eEEEeecCCCCeeEEEEccCC
Q 012994 50 LEKIFARPFIGAL-DGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIAN---RR---TVCQYSGHQGAVRGLTVSTDG 121 (452)
Q Consensus 50 ~~~~~~~~~~~~l-~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~---~~---~~~~~~~h~~~v~~l~~~~~~ 121 (452)
.|+ ..+.++..+ .+|.+.|++++|+| ++ .+|++|+.||+|++||+.+ +. ....+ +|...|++++|+|++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF 123 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC
Confidence 466 456777888 99999999999999 88 9999999999999999876 33 23333 499999999999999
Q ss_pred CeEEEEeCCCcEEEEeCC---CCCCCCCCCCCCCCCCCeeEEE-----ecCCeeeee--ecCCCCeEEEeC--CeEEEEe
Q 012994 122 RILVSCGTDCTVKLWNVP---VATLTDSDDSTDNSSEPLAVYV-----WKNSFWAVD--HQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~--~~i~i~d 189 (452)
++|++++.||.|++||+. .+........ ..+.... ....+.++. +++++.++++++ +.|++||
T Consensus 124 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 124 DAFAVSSKDGQIIVLKVNHYQQESEVKFLNC-----ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp SEEEEEETTSEEEEEEEEEEEETTEEEEEEE-----EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEE
T ss_pred CEEEEEeCCCEEEEEEeccccCCceeecccc-----ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 999999999999999995 3322111000 0111111 223444444 557788888886 6799999
Q ss_pred CCCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe--ecccceEEEccC---CCceEE
Q 012994 190 HNRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM--RTKSNSISWNPM---EPMNFT 262 (452)
Q Consensus 190 ~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~ 262 (452)
+.+++.+..+.. |...|.+++|+|++ .+|++|+.||.|++||++++..+..+.. ...+.++.|+|. ....++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~ 277 (437)
T 3gre_A 199 IRTLERLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVV 277 (437)
T ss_dssp TTTCCEEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEE
T ss_pred CCCCeeeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEE
Confidence 999999999988 78999999999987 7999999999999999999887776643 446778878764 345789
Q ss_pred eecCCCeEEEEeCCCccccceee-----------------------eC--cccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVH-----------------------MG--HESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~-----------------------~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
+++.|+.|++||+++........ .+ |...|++++|+ ++++|++|+.||.|++||
T Consensus 278 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 278 GGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFS 356 (437)
T ss_dssp EESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEE
T ss_pred EEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEE
Confidence 99999999999998655332222 12 77889999999 789999999999999999
Q ss_pred CCCCceeeeeccC------------------------------------CcCcEEEEEEcCC--CCEEEEeeCCCcEEEe
Q 012994 318 YNGGRSREIYHTK------------------------------------RMQRVFCVKFSCD--ASYVISGSDDTNLRLW 359 (452)
Q Consensus 318 ~~~~~~~~~~~~~------------------------------------~~~~v~~~~~s~~--~~~l~s~~~dg~i~iw 359 (452)
+.+++....+..+ |...|++++|+++ +.+|++|+.||.|+||
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 357 LNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp TTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 9998876655432 6688999999998 7899999999999999
Q ss_pred e
Q 012994 360 K 360 (452)
Q Consensus 360 ~ 360 (452)
+
T Consensus 437 ~ 437 (437)
T 3gre_A 437 Q 437 (437)
T ss_dssp C
T ss_pred C
Confidence 5
No 40
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-39 Score=298.33 Aligned_cols=283 Identities=14% Similarity=0.213 Sum_probs=236.4
Q ss_pred ccccccEEEEEeCCCCcc-eEEEeeCCCcEEEEeC----CCCc------eEEEeec----------CCCCeeEEEEccCC
Q 012994 63 DGHRDGISCMAKNPNYLK-GFFSGSMDGDIRLWDI----ANRR------TVCQYSG----------HQGAVRGLTVSTDG 121 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~-~l~tg~~dg~i~iwd~----~~~~------~~~~~~~----------h~~~v~~l~~~~~~ 121 (452)
..|.+.|++++|+|++ . +|++|+.||.|++||+ .+++ ....+.. |.+.|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLD-ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSSC-TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCCC-CcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 4566999999999999 7 9999999999999999 8887 4555554 68899999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceec
Q 012994 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF 199 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~ 199 (452)
++|++++.||.|++||. ++. .......+...+.+++|++++.++++++ +.+.+||+.+++.+..+
T Consensus 121 ~~l~~~~~dg~i~i~~~-~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 121 NSIVTGVENGELRLWNK-TGA------------LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp SEEEEEETTSCEEEEET-TSC------------EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEeC-CCC------------eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 99999999999999993 331 2222334567899999999999988876 67999999999988888
Q ss_pred ccCCCc---------------eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEe
Q 012994 200 QWGTDT---------------VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 200 ~~~~~~---------------i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (452)
..+... +.+++|+|++ .+++++.||.|++||+++......+. +...+.+++|+|++. .+++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 264 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLS 264 (425)
T ss_dssp CCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTT-EEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCC-EEEE
Confidence 877766 8999999864 58899999999999999988877764 356678999999877 5788
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
++.++.+++||++..... ..+.+|...|.+++|+|++ +|++++.||.|++||+.+++....+..+ ...|++++|+|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~~ 341 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQ-NCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQD 341 (425)
T ss_dssp EETTSCEEEECSSSBSCS-EEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECTT
T ss_pred EcCCCEEEEEECCCCccc-eEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcCC
Confidence 889999999999875443 4455789999999999999 9999999999999999999887776543 478999999999
Q ss_pred CCEEEEeeCCCcEEEeeccccc
Q 012994 344 ASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 344 ~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
+++|++++.||.|++|++.+++
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHH
T ss_pred CCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999887
No 41
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-39 Score=300.48 Aligned_cols=319 Identities=15% Similarity=0.181 Sum_probs=260.2
Q ss_pred CCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC
Q 012994 29 DPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h 108 (452)
...++|....+........+.+|+.........+.+| ..+....|+|++ ++|++|+.||.|++||+.+++....+.+|
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM-RRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS-CEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC-CEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 3446676666666666667888998888888888877 555666789998 99999999999999999999988888899
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVD 186 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~ 186 (452)
.+.|++++|+|++++|++++.||.|++||+.+++ .......+...+.+++|+|++.++++++ +.++
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 9999999999999999999999999999998763 2333445778899999999999999886 5799
Q ss_pred EEeCCCCCcceeccc---CCCceEEE---------------------EECCCCCcEEEEEecCCeEEEEEccCCCCceEE
Q 012994 187 IWNHNRSQPINSFQW---GTDTVISV---------------------RFNPAEPNVLATTASDRSITLYDLRMSSPARKV 242 (452)
Q Consensus 187 i~d~~~~~~~~~~~~---~~~~i~~~---------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (452)
+||+.+++.+..+.. +...+.++ +|+|++ .++++|+.||.|++||+++......+
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~ 285 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTIQL 285 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeEEc
Confidence 999999988887764 33444444 456766 78999999999999999988877666
Q ss_pred Ee--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-cccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 243 IM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 243 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.. ...+.+++|+|++..++++++.++.+++||+++.......+.. |...|.++.+ +++++|++++.||.|++||+.
T Consensus 286 ~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEEC
T ss_pred ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEecc
Confidence 53 3567899999999988999999999999999987665555544 6777888855 578899999999999999998
Q ss_pred CCcee--------eeeccCCcCcEEEEEEcCCCC---EEEEeeCCCcEEEeeccc
Q 012994 320 GGRSR--------EIYHTKRMQRVFCVKFSCDAS---YVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 320 ~~~~~--------~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 363 (452)
..... ......+...|.+++|+|++. .|++++.+|.+.+|++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 365 DPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 74221 112234557899999999999 788888899999999864
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-39 Score=288.25 Aligned_cols=252 Identities=21% Similarity=0.272 Sum_probs=199.2
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcEEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTVKL 135 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v~i 135 (452)
..+.+|.+.|++++|+|+| ++||+|+.|++|+|||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3567999999999999998 999999999999999998774 4677899999999999986 4899999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
||+.++.. .....+.+|...|.+++|+|++
T Consensus 86 Wd~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 86 WREENGTW--------------------------------------------------EKSHEHAGHDSSVNSVCWAPHD 115 (316)
T ss_dssp ECCSSSCC--------------------------------------------------CEEEEECCCSSCCCEEEECCTT
T ss_pred EECCCCcc--------------------------------------------------eEEEEccCCCCceEEEEECCCC
Confidence 99865411 1233456688899999999973
Q ss_pred -CcEEEEEecCCeEEEEEccCCCCceEE----EeecccceEEEccCC----------------CceEEeecCCCeEEEEe
Q 012994 216 -PNVLATTASDRSITLYDLRMSSPARKV----IMRTKSNSISWNPME----------------PMNFTAANEDCNCYSYD 274 (452)
Q Consensus 216 -~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~i~~~d 274 (452)
+.+|++|+.||.|++||++........ .+...+.++.|+|+. ...+++++.|+.|++||
T Consensus 116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd 195 (316)
T 3bg1_A 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195 (316)
T ss_dssp TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence 378999999999999999875422111 123456788898874 35799999999999999
Q ss_pred CCCcc--ccceeeeCcccceEEEEEcCCC----CEEEEEeCCCeEEEEECCCCc---eeeeeccCCcCcEEEEEEcCCCC
Q 012994 275 SRKLD--EAKCVHMGHESAVMDIDYSPTG----REFVTGSYDRTIRIFQYNGGR---SREIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 275 ~~~~~--~~~~~~~~~~~~v~~~~~s~~g----~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
.+... .....+.+|...|.+++|+|++ ++|++|+.||+|++||+.+.. ........+...|.+++|+|+++
T Consensus 196 ~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~ 275 (316)
T 3bg1_A 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITAN 275 (316)
T ss_dssp ECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTC
T ss_pred eCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCC
Confidence 86542 2344566899999999999986 789999999999999998632 11112233457899999999999
Q ss_pred EEEEeeCCCcEEEeecc
Q 012994 346 YVISGSDDTNLRLWKAK 362 (452)
Q Consensus 346 ~l~s~~~dg~i~iw~~~ 362 (452)
+|++++.||.|++|+..
T Consensus 276 ~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 276 ILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEEC
Confidence 99999999999999976
No 43
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.4e-39 Score=287.07 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=229.9
Q ss_pred hhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEE
Q 012994 39 VEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLT 116 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 116 (452)
+........+++|+..... +...+.||...|.+++|+|++ .++++|+.|++|++||+.+++.+..+..|...+.+++
T Consensus 51 l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~ 129 (321)
T 3ow8_A 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129 (321)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEE
T ss_pred EEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEE
Confidence 3444556677888875543 345789999999999999998 9999999999999999999999999999999999999
Q ss_pred EccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC
Q 012994 117 VSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ 194 (452)
Q Consensus 117 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~ 194 (452)
|+|++++|++++.||.|++||+.++.. ..........+.+++|+|++.++++++ +.|++||+.+++
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~~~~------------~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVESGKK------------EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTTCSE------------EEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCCCce------------eEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 999999999999999999999987632 233334456789999999999999986 679999999999
Q ss_pred cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEE
Q 012994 195 PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
.+..+..|...|.+++|+|++ .+|++|+.||.|++||+++......+.. ...+.+++|+|++.. +++++.|+.+++|
T Consensus 198 ~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~-l~s~s~D~~v~iw 275 (321)
T 3ow8_A 198 LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSVKVW 275 (321)
T ss_dssp EEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEE
T ss_pred EEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCE-EEEEeCCCcEEEE
Confidence 999999999999999999988 7999999999999999998877766653 456789999998775 7889999999999
Q ss_pred eCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 274 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
|+.+.... ..+.+|...|.+++|+|+|++|++++.||.|++||+.
T Consensus 276 d~~~~~~~-~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 276 DVGTRTCV-HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred eCCCCEEE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99876543 4456899999999999999999999999999999963
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.6e-40 Score=304.91 Aligned_cols=313 Identities=10% Similarity=0.051 Sum_probs=251.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
..+++++|+|++ ++|++|+.||.|++||+.+++....+..| ..+....|++++++|++++.||.|++||+.++.....
T Consensus 57 ~~~~~~~~s~~g-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 57 DAGKGNTFEKVG-SHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp BCCTTCEEEEEE-TTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred ccccceeeeecC-CeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 345689999998 99999999999999999888776666666 4455557899999999999999999999976533211
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS 224 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 224 (452)
. ..+...+.+++|+|++.++++++ +.|++||+.+++.+..+..|...|.+++|+|++ .+|++++.
T Consensus 135 ~------------~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~ 201 (420)
T 3vl1_A 135 D------------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASL 201 (420)
T ss_dssp T------------TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEET
T ss_pred c------------ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcC
Confidence 1 24567899999999999999887 679999999999999999999999999999988 78999999
Q ss_pred CCeEEEEEccCCCCceEEEee-------------------------cccceEEEccCCCceEEeecCCCeEEEEeCCCcc
Q 012994 225 DRSITLYDLRMSSPARKVIMR-------------------------TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD 279 (452)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 279 (452)
||.|++||+++++....+... ..+..++|+|++. .+++++.++.+++||++...
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHVSGVITVHNVFSKE 280 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEETTSCEEEEETTTCC
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcCCCeEEEEECCCCc
Confidence 999999999988877766531 2233445566554 57889999999999999887
Q ss_pred ccceeeeCcccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCce-eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEE
Q 012994 280 EAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGGRS-REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLR 357 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~ 357 (452)
........|...|++++|+|++. +|++|+.||.|++||+.++.. ...+..++...|+++.| +++++|++++.||.|+
T Consensus 281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIK 359 (420)
T ss_dssp EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEE
T ss_pred eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEE
Confidence 77777778899999999999999 999999999999999998754 55666656678888865 5788999999999999
Q ss_pred EeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 358 LWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 358 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
+|++........+....... ....+...+..++|.|..+
T Consensus 360 iw~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPT--------FLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EEEECCTTCCSCEECTTSCE--------EECCSSCCCCEEEEECCSS
T ss_pred EEeccCCCCCccceeccCcc--------EEccCCcceEEEEEccCCC
Confidence 99998743322211100000 1126777888999988866
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=291.28 Aligned_cols=289 Identities=15% Similarity=0.240 Sum_probs=235.1
Q ss_pred ccccccc--EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 62 LDGHRDG--ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 62 l~~h~~~--V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
..+|.+. +.+++|++ ..+++++.||.|++||+.+++....+.. |...|++++|+|++++|++|+.||.|++||+
T Consensus 87 ~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred CCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 3467665 45566665 4478888999999999999988877765 8899999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCC-CCCcceecccCCCceEEEEECCCC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHN-RSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~-~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
.++... .....+...+.+++| ++.++++++ +.|.+||+. ....+..+..|...|.+++|+|++
T Consensus 164 ~~~~~~------------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 229 (401)
T 4aez_A 164 ESQTKL------------RTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG 229 (401)
T ss_dssp TTCCEE------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred cCCeEE------------EEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC
Confidence 876432 222345667888888 456777765 689999999 566778888999999999999987
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeec--CCCeEEEEeCCCccccceeeeCcccce
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAAN--EDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
.+|++|+.||.|++||+++......+. +...+.+++|+|++..++++++ .++.+++||+.+....... .+...|
T Consensus 230 -~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v 306 (401)
T 4aez_A 230 -LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQV 306 (401)
T ss_dssp -SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCE
T ss_pred -CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcE
Confidence 799999999999999999888776664 4567889999999999888876 7999999999876554433 466789
Q ss_pred EEEEEcCCCCEEEE--EeCCCeEEEEECCCCceeeee-ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 293 MDIDYSPTGREFVT--GSYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 293 ~~~~~s~~g~~l~s--~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
.+++|+|++++|++ |+.||.|++||+.++...... ...|...|++++|+|++++|++++.||.|++|++.+++.+..
T Consensus 307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------
T ss_pred EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence 99999999999999 448999999999987665543 245568899999999999999999999999999999887654
Q ss_pred C
Q 012994 370 L 370 (452)
Q Consensus 370 ~ 370 (452)
.
T Consensus 387 ~ 387 (401)
T 4aez_A 387 P 387 (401)
T ss_dssp -
T ss_pred c
Confidence 4
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=281.90 Aligned_cols=244 Identities=16% Similarity=0.267 Sum_probs=204.1
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE----eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ----YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~----~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
..|...|++++|+|+ ..|++|+.||+|+|||+.+++.+.. +.+|.+.|++++|+|++++|++|+.||+|++||+
T Consensus 79 ~~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346778999999998 4688999999999999998875443 4589999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeC--CeEEEEeCCCCCcceeccc--CCCceEEEEECC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQW--GTDTVISVRFNP 213 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~ 213 (452)
.+++.. .....+...+.+++|++++. ++++++ +.|++||+++++....+.. +...+.+++|+|
T Consensus 157 ~~~~~~------------~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 157 AQQVVL------------SSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp TTTEEE------------EEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS
T ss_pred CCCcEE------------EEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecC
Confidence 877432 22234577899999999885 566664 6899999999998877743 456799999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccce
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV 292 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v 292 (452)
++..+|++|+.||.|++||+++++.+..+.. ...+.+++|+|++..++++++.|+.|++||...... ....+|.+.|
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~--~~~~~H~~~V 302 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--FRSQAHRDFV 302 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE--EEECCCSSCE
T ss_pred CCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE--EEEcCCCCCE
Confidence 8878999999999999999999998888774 566789999999988899999999999999987643 3456899999
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCc
Q 012994 293 MDIDYSPTGR-EFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 293 ~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~ 322 (452)
++++|+|++. +|++|+.||+|++|++.+..
T Consensus 303 ~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 303 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred EEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9999999986 57799999999999998754
No 47
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-38 Score=285.72 Aligned_cols=269 Identities=19% Similarity=0.293 Sum_probs=230.6
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeec
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSG 107 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~ 107 (452)
+.|....+........+++|+......+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+.+. .....+.+
T Consensus 63 ~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~ 141 (340)
T 1got_B 63 WGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREGNVRVSRELAG 141 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSBSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCCcceeEEEecC
Confidence 44555555555566778899998888999999999999999999998 99999999999999999875 35667889
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (452)
|.+.|.++.|++++ .|++++.|++|++||+.++... .....+...+.+++++|++.++++++ +.|
T Consensus 142 h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v 208 (340)
T 1got_B 142 HTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQT------------TTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208 (340)
T ss_dssp CSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEE------------EEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEE------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 99999999999886 4899999999999999876432 22234567899999999999999886 679
Q ss_pred EEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec---ccceEEEccCCCceEE
Q 012994 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT---KSNSISWNPMEPMNFT 262 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (452)
++||+.++.....+..|...|.+++|+|++ ++|++|+.||.|++||+++......+.... .+.+++|+|++.. ++
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~ 286 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LL 286 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-EE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE-EE
Confidence 999999999999999999999999999988 799999999999999999887666654432 5678999998765 78
Q ss_pred eecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
+++.++.+++||...... ...+.+|...|.+++|+|+|.+|++|+.||.|++||
T Consensus 287 ~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCeEEEEEcccCcE-eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999987554 345669999999999999999999999999999997
No 48
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-37 Score=278.10 Aligned_cols=277 Identities=19% Similarity=0.262 Sum_probs=232.9
Q ss_pred ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
+....+.+|.+.|++++|+|++++|+||+.||+|++||..++. .......+...+.+++|+|++..++
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~------------~~~~~~~~~~~v~~~~~sp~g~~la 122 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN------------KEHAVTMPCTWVMACAYAPSGCAIA 122 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------EEEEEECSSSCCCEEEECTTSSEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC------------cceEEecCCCCEEEEEECCCCCEEE
Confidence 4567889999999999999999999999999999999987663 2233344556789999999999999
Q ss_pred EeC--CeEEEEeCCCC------CcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccce
Q 012994 180 TAG--AQVDIWNHNRS------QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNS 250 (452)
Q Consensus 180 ~~~--~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~ 250 (452)
+++ +.+.+|++... .....+..|...|.++.|+|++ ..|++++.||+|++||+++++.+..+.. ...+.+
T Consensus 123 sg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~ 201 (354)
T 2pbi_B 123 CGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLC 201 (354)
T ss_dssp EESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEE
Confidence 998 57999998654 2345667799999999999988 6899999999999999999988877764 456678
Q ss_pred EEEccCC-CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc
Q 012994 251 ISWNPME-PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 251 ~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 329 (452)
+.++|.. ...+++++.|+.+++||+++... ...+.+|...|++++|+|++++|++|+.|+.|++||++.+.....+..
T Consensus 202 ~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 280 (354)
T 2pbi_B 202 LDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK 280 (354)
T ss_dssp EEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 8998864 47899999999999999987653 445668999999999999999999999999999999998877665533
Q ss_pred C-CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 330 K-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 330 ~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
. +...+++++|+|++++|++|+.||.|++||+.+++.+..+. +|...|..++|+|+-..++
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~-----------------~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF-----------------GHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-----------------CCSSCEEEEEECTTSSCEE
T ss_pred CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE-----------------CCCCcEEEEEECCCCCEEE
Confidence 2 23578999999999999999999999999999888765543 6788899999999866443
No 49
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-39 Score=296.42 Aligned_cols=287 Identities=12% Similarity=0.133 Sum_probs=221.5
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--ceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
+..|.++|++++|+|++ ++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||+|++||+.
T Consensus 7 ~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred EecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34567899999999998 99999999999999999988 6778889999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC---cceeccc-CCCceEEEEECC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ---PINSFQW-GTDTVISVRFNP 213 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~---~~~~~~~-~~~~i~~~~~~~ 213 (452)
++... ........+...+.+++|+|++.++++++ +.|++||+.+++ ....+.. |...|.+++|+|
T Consensus 86 ~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 86 PDGTW---------KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp ---CC---------CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT
T ss_pred CCCce---------eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC
Confidence 76410 11223334677899999999999888876 679999999887 4677777 899999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCC------------------CceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 214 AEPNVLATTASDRSITLYDLRMSS------------------PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
++ .+|++++.||.|++||++... ....+.+...+.+++|+|++. .+++++.|+.|++||+
T Consensus 157 ~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 157 NN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYP 234 (377)
T ss_dssp TS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSS-CEEEEETTTEEC-CEE
T ss_pred CC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCC-EEEEEeCCCcEEEEEC
Confidence 87 799999999999999986322 222223445678999999887 5788899999999999
Q ss_pred CCcccc---ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-e---------------------------
Q 012994 276 RKLDEA---KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-R--------------------------- 324 (452)
Q Consensus 276 ~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~-~--------------------------- 324 (452)
...... ...+.+|...|.+++|+|+|++|++|+.++.+ +|+...... .
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG 313 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence 887652 44566899999999999999999999877655 666652110 0
Q ss_pred -----------------------eeeccCCcCcEEEEEEcCCC-C---EEEEeeCCCcEEEeec
Q 012994 325 -----------------------EIYHTKRMQRVFCVKFSCDA-S---YVISGSDDTNLRLWKA 361 (452)
Q Consensus 325 -----------------------~~~~~~~~~~v~~~~~s~~~-~---~l~s~~~dg~i~iw~~ 361 (452)
......|...|+++++.+.. . .|+||+.||.|+|||+
T Consensus 314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00112266889999976643 3 6999999999999985
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.1e-37 Score=325.85 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=255.2
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
..+.+|.+.|++++|+|++ ++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||+|++||+.
T Consensus 609 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 4568999999999999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC--CCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW--EGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
+++. ......+...+.++.|++ ++.++++++ +.|.+||+.+++.+..+.+|...|.+++|+|++
T Consensus 688 ~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~ 755 (1249)
T 3sfz_A 688 TGKL------------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD 755 (1249)
T ss_dssp TCCE------------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST
T ss_pred CCce------------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC
Confidence 7743 233345677899999999 455777765 579999999999999999999999999999988
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEee--------------cccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIMR--------------TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
.++++++.||.|++||+++......+... ..+.+++|+|++..+++++ ++.+.+||..+....
T Consensus 756 -~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~ 832 (1249)
T 3sfz_A 756 -ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLL 832 (1249)
T ss_dssp -TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEE
T ss_pred -CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCce
Confidence 79999999999999999988766665432 2567889999988766654 689999999988877
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
.....+|...|.+++|+|+++++++++.||.|++||+.++.....+. .|...|++++|+|++++|++++.||.|++|++
T Consensus 833 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred eEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 77777999999999999999999999999999999999998877765 45588999999999999999999999999998
Q ss_pred ccccc
Q 012994 362 KASEQ 366 (452)
Q Consensus 362 ~~~~~ 366 (452)
.++..
T Consensus 912 ~~~~~ 916 (1249)
T 3sfz_A 912 KKVCK 916 (1249)
T ss_dssp HHHHS
T ss_pred cccce
Confidence 76433
No 51
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-38 Score=307.69 Aligned_cols=331 Identities=11% Similarity=0.146 Sum_probs=256.3
Q ss_pred hHhhhhHHHhhhhhccccccccccccc---cEEEEEeCCC-CcceEEEeeCCCcEEEEeCCCCceEEEe-e---cCCCCe
Q 012994 41 YVRALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQY-S---GHQGAV 112 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~---~h~~~v 112 (452)
.......+.+|+......+..+.+|.+ .|++++|+|+ + ++|++|+.||.|++||+.+++.+..+ . +|...|
T Consensus 178 ~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v 256 (615)
T 1pgu_A 178 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 256 (615)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred EEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCce
Confidence 344456678899888888999999999 9999999999 8 99999999999999999999999988 6 899999
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeC
Q 012994 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNH 190 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~ 190 (452)
.+++|+ ++++|++++.||.|++||+.+++....+..... .....+..+.+. ++..+++++ +.+.+||+
T Consensus 257 ~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~ 326 (615)
T 1pgu_A 257 FALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ--------QLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL 326 (615)
T ss_dssp EEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT--------CGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred EEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCC--------cccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence 999999 999999999999999999987644322211100 001344455554 555555554 56777777
Q ss_pred CCCCcceecccCCCceEEEEECCC---------------------------------CCcEEEEEecCCeEEEEEccC--
Q 012994 191 NRSQPINSFQWGTDTVISVRFNPA---------------------------------EPNVLATTASDRSITLYDLRM-- 235 (452)
Q Consensus 191 ~~~~~~~~~~~~~~~i~~~~~~~~---------------------------------~~~~l~~~~~dg~i~i~d~~~-- 235 (452)
.+++.+..+..|...|.+++| |+ + ..+++++.||.|++||+.+
T Consensus 327 ~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~ 404 (615)
T 1pgu_A 327 GHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHE 404 (615)
T ss_dssp TEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEE
T ss_pred CCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCC-cEEEEEeCCCCEEEEEcccCc
Confidence 776666666555555555554 32 3 4667777778877777653
Q ss_pred --------------------------------CCCceEEEeecccceEEEccCCCceEEeecC-CCeEEEEeCCCccccc
Q 012994 236 --------------------------------SSPARKVIMRTKSNSISWNPMEPMNFTAANE-DCNCYSYDSRKLDEAK 282 (452)
Q Consensus 236 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~d~~~~~~~~ 282 (452)
++....+.....+.+++++ ...+++++. ++.+++||........
T Consensus 405 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~ 481 (615)
T 1pgu_A 405 FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSF 481 (615)
T ss_dssp CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccc
Confidence 2233333344556667777 456778888 9999999998754332
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC----------CCCEEEEeeC
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC----------DASYVISGSD 352 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~s~~~ 352 (452)
....+|...|++++|+|+|++|++++.||.|++||+.+++.+..+...|...|++++|+| ++++|++++.
T Consensus 482 ~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~ 561 (615)
T 1pgu_A 482 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 561 (615)
T ss_dssp ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET
T ss_pred cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC
Confidence 455688999999999999999999999999999999999988877664668999999999 9999999999
Q ss_pred CCcEEEeecccc-cccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 353 DTNLRLWKAKAS-EQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 353 dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
||.|++|++.++ +.+..+. +|...|..++|.|+.+
T Consensus 562 dg~i~iw~~~~~~~~~~~~~-----------------~h~~~v~~l~~s~~~~ 597 (615)
T 1pgu_A 562 DTNIFIYSVKRPMKIIKALN-----------------AHKDGVNNLLWETPST 597 (615)
T ss_dssp TSCEEEEESSCTTCCEEETT-----------------SSTTCEEEEEEEETTE
T ss_pred CCcEEEEECCCCceechhhh-----------------cCccceEEEEEcCCCC
Confidence 999999999987 5554442 6778899999998876
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=6.9e-38 Score=280.68 Aligned_cols=307 Identities=14% Similarity=0.173 Sum_probs=253.3
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
|.++|.+++|+|+| ++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++...
T Consensus 8 ~~~~v~~~~~s~dg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTADG-QMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSSS-CEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCCC-CEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 56789999999999 8998888888887777665555555567999999999999999999998 999999999876432
Q ss_pred CCCCCCCCCCCCeeEE---EecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC--cceecccCCCceEEEEECCCCCc
Q 012994 145 DSDDSTDNSSEPLAVY---VWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 217 (452)
. ..... .+...+.+++|+|++.++++++ +.+.+||+.+++ ....+..|...+.+++|+|++ .
T Consensus 86 ~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 154 (337)
T 1gxr_A 86 S----------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-K 154 (337)
T ss_dssp S----------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-S
T ss_pred e----------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-C
Confidence 1 11111 4567899999999999888876 679999999887 566777888999999999987 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
++++++.||.|++||+++.+....+. +...+.++.|+|++. .+++++.++.+++||++........ .+...+.+++
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~--~~~~~v~~~~ 231 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLG 231 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeee--cCCCceEEEE
Confidence 89999999999999999887777665 356678999999875 4778889999999999876554433 4678899999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhh
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQR 376 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 376 (452)
|+|++++|++++.||.|++||+.++..... ..|...|++++|+|++++|++++.||.|++|++.+++.+...
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------ 303 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------ 303 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCeEEE--cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------
Confidence 999999999999999999999998876433 345588999999999999999999999999999988776322
Q ss_pred hhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 377 KHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
.+...+..++++|+...++
T Consensus 304 ------------~~~~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 304 ------------KESSSVLSCDISVDDKYIV 322 (337)
T ss_dssp ------------ECSSCEEEEEECTTSCEEE
T ss_pred ------------cCCCcEEEEEECCCCCEEE
Confidence 4667788899988765443
No 53
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-38 Score=284.61 Aligned_cols=290 Identities=12% Similarity=0.045 Sum_probs=216.6
Q ss_pred cccEEEEEeCCCCcceEEEeeCCC-------cEEEEeCCCCce----------EEEeecCCCCeeEEEEccCCCeEEEE-
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDG-------DIRLWDIANRRT----------VCQYSGHQGAVRGLTVSTDGRILVSC- 127 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg-------~i~iwd~~~~~~----------~~~~~~h~~~v~~l~~~~~~~~l~s~- 127 (452)
.-+|+|++|+|++ .+|++|+.|. .|++|++..+.. ...+.+|...|.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg-~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNND-TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETT-EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCCC-cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 3589999999998 9999987543 599999875431 12456788899888775 4466655
Q ss_pred ----------eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCC
Q 012994 128 ----------GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRS 193 (452)
Q Consensus 128 ----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~ 193 (452)
+.|+.+++|++............ ............+.+++|+|||.++++++ +.|++||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS---VDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE---ECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeee---eceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 45778999988654211000000 00000001123467899999999987543 56999999999
Q ss_pred CcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCCceEEeecCCC--
Q 012994 194 QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEPMNFTAANEDC-- 268 (452)
Q Consensus 194 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-- 268 (452)
+.+..+. |...|.+++|+|++ .++++++. +.+.+|+..++........ ...+.+++|+|++..++.++...+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg-~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~ 244 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDG-KVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG 244 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTS-SEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred cEEEEeC-CCCceEEEEEccCC-ceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence 9888876 67889999999998 68888874 5577777776665543332 345678999999987665554432
Q ss_pred -eEEEEeCCCcccc---ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 269 -NCYSYDSRKLDEA---KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 269 -~i~~~d~~~~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
.++.|+....... .....+|...|++++|||+|++||+|+.|+.|+|||+.+++.+..+..+|...|++++|+|||
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg 324 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDS 324 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTS
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCC
Confidence 6788887654432 234568899999999999999999999999999999999999888777788999999999999
Q ss_pred CEEEEeeCCCcEEEeecccc
Q 012994 345 SYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 345 ~~l~s~~~dg~i~iw~~~~~ 364 (452)
++|++|+.|++|+||++...
T Consensus 325 ~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 325 TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999654
No 54
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3e-37 Score=309.28 Aligned_cols=296 Identities=16% Similarity=0.271 Sum_probs=253.3
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.+.+.|.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ccceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 4567889999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC-CcceecccCCCceEEEEECC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~ 213 (452)
|+.++. .......+...+.+++|+|++..+++++ +.+.+||+.++ .....+..|...|.+++|+|
T Consensus 83 ~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p 150 (814)
T 3mkq_A 83 NYNTGE------------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP 150 (814)
T ss_dssp ETTTCC------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred ECCCCc------------EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence 998763 2233344678899999999999988876 67999999987 66677888999999999999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccC-CCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPM-EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
.++..+++++.||.|++||+.+......+... ..+..++|+|. ....+++++.++.+.+||...... ...+.+|..
T Consensus 151 ~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~-~~~~~~~~~ 229 (814)
T 3mkq_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC-VATLEGHMS 229 (814)
T ss_dssp TEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE-EEEEECCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEcCCCC
Confidence 44489999999999999999988877777644 56789999993 334688899999999999987554 445568999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC--EEEEeeCCCcEEEeecccccccc
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS--YVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
.|.+++|+|+|++|++++.||.|++||+.+++....+..+. ..+.+++|+|++. +++++ .|+.+.+|++..+....
T Consensus 230 ~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 307 (814)
T 3mkq_A 230 NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTL 307 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS-SSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCE
T ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC-CcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCcee
Confidence 99999999999999999999999999999998877775544 7899999999987 45554 46678899987654433
No 55
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=289.08 Aligned_cols=295 Identities=13% Similarity=0.225 Sum_probs=228.7
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-----------eEEEeecCC------------CCeeEEEEccC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----------TVCQYSGHQ------------GAVRGLTVSTD 120 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~~~ 120 (452)
.|.+.|++++|+|++ .+||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 368999999999998 999999999999999998876 577889998 88999999999
Q ss_pred C--CeEEEEeCCCcEEEEeCCCCCCCCCCCC-------------CCCCCC-------------CeeE--EEecCCeeeee
Q 012994 121 G--RILVSCGTDCTVKLWNVPVATLTDSDDS-------------TDNSSE-------------PLAV--YVWKNSFWAVD 170 (452)
Q Consensus 121 ~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~-------------~~~~~~-------------~~~~--~~~~~~~~~~~ 170 (452)
+ .+|++++.||+|++||+..+........ ...... +... ..+...+.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 7999999999999999876432100000 000000 0001 23667899999
Q ss_pred ecCCCCeEEEeC-CeEEEEeCCC-CCcce-------ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC---
Q 012994 171 HQWEGDLFATAG-AQVDIWNHNR-SQPIN-------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP--- 238 (452)
Q Consensus 171 ~~~~~~~~~~~~-~~i~i~d~~~-~~~~~-------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 238 (452)
|++++.+++++. +.|++||+.+ ++.+. .+..|...|.+++|+|+++.+|++|+.||.|++||+++...
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 999999999875 5799999984 33333 36678999999999999868999999999999999998876
Q ss_pred -ceEEEeec-------------ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc-------------
Q 012994 239 -ARKVIMRT-------------KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA------------- 291 (452)
Q Consensus 239 -~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------------- 291 (452)
...+.... .+.+++|+|++.. +++++. +.+++||++........+.+|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 45555433 6789999998776 556666 999999998755555566667532
Q ss_pred --eEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec-------------------------------cCCcCcEEEE
Q 012994 292 --VMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-------------------------------TKRMQRVFCV 338 (452)
Q Consensus 292 --v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------------------~~~~~~v~~~ 338 (452)
+..++|+|+|++|++|+.||.|++||+.+++...... ......|..+
T Consensus 343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 3349999999999999999999999999887653211 1223568999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecc
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
+|+|++.+|++++.++ +++|..+
T Consensus 423 ~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 423 AWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp EECSSSSEEEEECSSC-EEEEECC
T ss_pred EECCCCCEEEEEecce-eeeeccc
Confidence 9999999999998775 7888643
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=277.38 Aligned_cols=295 Identities=14% Similarity=0.197 Sum_probs=238.9
Q ss_pred hhhhccccccccccccccEEEEEeCCCC--cceEEEeeCCCcEEEEeCCC-CceE-EEeecCCCCeeEEEEccCCCeEEE
Q 012994 51 EKIFARPFIGALDGHRDGISCMAKNPNY--LKGFFSGSMDGDIRLWDIAN-RRTV-CQYSGHQGAVRGLTVSTDGRILVS 126 (452)
Q Consensus 51 ~~~~~~~~~~~l~~h~~~V~~~~~~~~~--~~~l~tg~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~l~s 126 (452)
++......+..+.+|.+.|++++|+|++ ..+|++|+.||.|++||+.+ +..+ ..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 3444555677889999999999999993 28999999999999999987 5544 778899999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee--cCCCCeEEEeC--CeEEEEeCCCCCcceecccC
Q 012994 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH--QWEGDLFATAG--AQVDIWNHNRSQPINSFQWG 202 (452)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~ 202 (452)
++.||.|++||+.++ .......+...+.++.| ++++.++++++ +.|++||+.+++.+..+..+
T Consensus 104 ~~~dg~v~iwd~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSN-------------QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EETTSEEEEEETTTT-------------EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EcCCCcEEEEEcCCC-------------CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 999999999999876 33445667889999999 89999888876 68999999999999888875
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCC---ceEEeecCCCeEEEEeCC
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEP---MNFTAANEDCNCYSYDSR 276 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~d~~ 276 (452)
. .+.++.+.+ ..+++++.++.+.+||++.......... ......+.+.+... ..+++++.++.+.+||.+
T Consensus 171 ~-~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 171 E-RCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp S-CEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred C-CceEEEecC---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence 4 666777764 4678889999999999987654333221 22334455544332 348999999999999998
Q ss_pred Ccc--ccceeeeCccc------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 277 KLD--EAKCVHMGHES------------AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 277 ~~~--~~~~~~~~~~~------------~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
... .....+.+|.. .|++++|+|++++|++|+.||.|++||+.+++.+..+.. |...|++++|+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~ 325 (368)
T 3mmy_A 247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-LDQPISACCFNH 325 (368)
T ss_dssp CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-CSSCEEEEEECT
T ss_pred CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC-CCCCceEEEECC
Confidence 764 33445556665 799999999999999999999999999999988877754 458899999999
Q ss_pred CCCEEEEeeCCCcEEEeeccc
Q 012994 343 DASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 343 ~~~~l~s~~~dg~i~iw~~~~ 363 (452)
++++|++++.|+..+.|++.+
T Consensus 326 ~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 326 NGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp TSSCEEEEECCCSTTCGGGCC
T ss_pred CCCeEEEEecccccccccccC
Confidence 999999999998766666543
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.8e-37 Score=273.88 Aligned_cols=266 Identities=18% Similarity=0.237 Sum_probs=219.9
Q ss_pred hhhHhhhhHHHhhhhhc-----cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCee
Q 012994 39 VEYVRALTAAKLEKIFA-----RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVR 113 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~ 113 (452)
+........+++|++.. ...+..+.+|...|.+++|+|++ .+|++|+.|++|++||+.+++.+..+.+|...|.
T Consensus 33 l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~ 111 (319)
T 3frx_A 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVATGETYQRFVGHKSDVM 111 (319)
T ss_dssp EEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred EEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE
Confidence 33344555677887643 23467889999999999999998 9999999999999999999999999999999999
Q ss_pred EEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC------CCeEEEeC--CeE
Q 012994 114 GLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE------GDLFATAG--AQV 185 (452)
Q Consensus 114 ~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~i 185 (452)
+++|+|++.+|++|+.|++|++||+... .......+...+.++.+.|. +..+++++ +.|
T Consensus 112 ~~~~~~~~~~l~s~s~D~~i~vwd~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i 178 (319)
T 3frx_A 112 SVDIDKKASMIISGSRDKTIKVWTIKGQ-------------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178 (319)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEETTSC-------------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC-------------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEE
Confidence 9999999999999999999999998532 22233345667888888875 44677765 679
Q ss_pred EEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeec
Q 012994 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (452)
++||+.+.+....+.+|...|.+++|+|++ .+|++|+.||.|++||+.+.+.+..+.....+.+++|+|++..+ +++.
T Consensus 179 ~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l-a~~~ 256 (319)
T 3frx_A 179 KAWNLNQFQIEADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWL-AAAT 256 (319)
T ss_dssp EEEETTTTEEEEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEE-EEEE
T ss_pred EEEECCcchhheeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEE-EEEc
Confidence 999999999999999999999999999988 79999999999999999999988888888889999999998654 3343
Q ss_pred CCCeEEEEeCCCcccccee-------eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 266 EDCNCYSYDSRKLDEAKCV-------HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 266 ~~~~i~~~d~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
+..+.+|+.......... ...|...+.+++|+|+|++|++|+.||.|++||+.++
T Consensus 257 -~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 257 -ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp -TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred -CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 445888887654322211 1245667999999999999999999999999998754
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.9e-37 Score=277.24 Aligned_cols=279 Identities=10% Similarity=0.110 Sum_probs=234.2
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---eEEEeecCCCCeeEEEEccCCC-eEEEEeCCCcEEE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKL 135 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~i 135 (452)
....+|.+.|++++|+|++ .+|++|+.||.|++||+.+++ ....+.+|...|.+++|+|+++ +|++++.||.|++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ecccCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 3456899999999999998 999999999999999998877 3445568999999999999999 9999999999999
Q ss_pred EeC-CCCCCCCCCCCCCCCCCCeeEEE--ecCCeeeeeecCCCCeEEEeC--CeEEEEeCCC---------CCcceeccc
Q 012994 136 WNV-PVATLTDSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR---------SQPINSFQW 201 (452)
Q Consensus 136 wd~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~---------~~~~~~~~~ 201 (452)
||+ ..+.. ..... +...+.+++|++ +..+++++ +.|++||+.+ ++++..+.
T Consensus 84 wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 84 VDLIGSPSF-------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp ECSSSSSSE-------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEeccCCce-------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 999 76532 22223 567889999999 88888876 6799999988 77777777
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccC-CCCceEE---EeecccceEEEcc-CCCceEEeecCCCeEEEEeCC
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKV---IMRTKSNSISWNP-MEPMNFTAANEDCNCYSYDSR 276 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~ 276 (452)
+...+.+++|+|++ +++++.||.|++||+++ ....... .....+.+++|+| ++. .+++++.++.+.+|+..
T Consensus 149 ~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-GYACSSIDGRVAVEFFD 224 (342)
T ss_dssp SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-EEEEEETTSEEEEEECC
T ss_pred eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-EEEEEecCCcEEEEEEc
Confidence 78999999999854 88999999999999988 5543222 2345678999999 765 57888899999999998
Q ss_pred Cc-----cccceeeeCccc---------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 277 KL-----DEAKCVHMGHES---------AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 277 ~~-----~~~~~~~~~~~~---------~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
.. ......+..|.. .|++++|+|++++|++|+.||.|++||+.+++.+..+..+|...|++++ |
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~ 302 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C 302 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C
Confidence 76 355556666655 9999999999999999999999999999999988887666468999999 9
Q ss_pred CCCEEEEeeCCCc-EEEee
Q 012994 343 DASYVISGSDDTN-LRLWK 360 (452)
Q Consensus 343 ~~~~l~s~~~dg~-i~iw~ 360 (452)
++++|++++.||. .+.|.
T Consensus 303 ~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 303 SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSEEEEEEECTHHHHCSS
T ss_pred CCCeEEEEecCCccccccc
Confidence 9999999999998 55554
No 59
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.1e-37 Score=277.72 Aligned_cols=264 Identities=22% Similarity=0.306 Sum_probs=215.5
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEcc--CCCeEEEEeCCCcE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST--DGRILVSCGTDCTV 133 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~--~~~~l~s~~~dg~v 133 (452)
..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.++ +....+.+|...|++++|+| ++++|++++.||.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 4568999999999999998 99999999999999999876 46677889999999999999 69999999999999
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECC
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNP 213 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~ 213 (452)
++||+..+...... ...+.+..+..|...|.+++|+|
T Consensus 84 ~vwd~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~ 120 (351)
T 3f3f_A 84 KLWEEDPDQEECSG-------------------------------------------RRWNKLCTLNDSKGSLYSVKFAP 120 (351)
T ss_dssp EEEEECTTSCTTSS-------------------------------------------CSEEEEEEECCCSSCEEEEEECC
T ss_pred EEEecCCCcccccc-------------------------------------------cCcceeeeecccCCceeEEEEcC
Confidence 99999766321100 01123455667889999999999
Q ss_pred C--CCcEEEEEecCCeEEEEEccCCCCceEEEe--------------ecccceEEEccC--CCceEEeecCCCeEEEEeC
Q 012994 214 A--EPNVLATTASDRSITLYDLRMSSPARKVIM--------------RTKSNSISWNPM--EPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 214 ~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~ 275 (452)
+ + .++++++.||.|++||+++......+.. ...+.++.|+|+ ....+++++.++.+.+|+.
T Consensus 121 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~ 199 (351)
T 3f3f_A 121 AHLG-LKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG 199 (351)
T ss_dssp GGGC-SEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEEC
T ss_pred CCCC-cEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEcc
Confidence 8 6 7899999999999999998876654432 235578899997 5667888999999877776
Q ss_pred CCccc-cceeeeCcccceEEEEEcCCC----CEEEEEeCCCeEEEEECCCC-----------------------------
Q 012994 276 RKLDE-AKCVHMGHESAVMDIDYSPTG----REFVTGSYDRTIRIFQYNGG----------------------------- 321 (452)
Q Consensus 276 ~~~~~-~~~~~~~~~~~v~~~~~s~~g----~~l~s~~~dg~i~iwd~~~~----------------------------- 321 (452)
..... ....+.+|...|++++|+|++ ++|++|+.||.|++||+..+
T Consensus 200 ~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (351)
T 3f3f_A 200 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279 (351)
T ss_dssp TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------------
T ss_pred CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccc
Confidence 65442 244556899999999999998 89999999999999999864
Q ss_pred -----------------ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 322 -----------------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 322 -----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
..+..+ ..|...|++++|+|++++|++|+.||.|++|++.+++.+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 343 (351)
T 3f3f_A 280 SDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC 343 (351)
T ss_dssp -----------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred cccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence 222223 34568899999999999999999999999999998765543
No 60
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=283.05 Aligned_cols=258 Identities=21% Similarity=0.326 Sum_probs=214.3
Q ss_pred ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC--CCceEEEeecCCCCeeEEEEccC--CCeEEEEeCCCc
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCT 132 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~ 132 (452)
.++..+.+|.+.|++++|+|++ .+|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4567889999999999999998 999999999999999998 55677888999999999999976 899999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
|++||+.++.. ..+..+..|...|.+++|+
T Consensus 81 v~iwd~~~~~~--------------------------------------------------~~~~~~~~~~~~v~~~~~~ 110 (379)
T 3jrp_A 81 VLIWKEENGRW--------------------------------------------------SQIAVHAVHSASVNSVQWA 110 (379)
T ss_dssp EEEEEEETTEE--------------------------------------------------EEEEEECCCSSCEEEEEEC
T ss_pred EEEEEcCCCce--------------------------------------------------eEeeeecCCCcceEEEEeC
Confidence 99999865420 1234455678899999999
Q ss_pred CC--CCcEEEEEecCCeEEEEEccCCCCceEEE---eecccceEEEccC------------CCceEEeecCCCeEEEEeC
Q 012994 213 PA--EPNVLATTASDRSITLYDLRMSSPARKVI---MRTKSNSISWNPM------------EPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 213 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~d~ 275 (452)
|+ + .++++++.||.|++||++......... +...+.++.|+|. ....+++++.++.|++||+
T Consensus 111 ~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 189 (379)
T 3jrp_A 111 PHEYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189 (379)
T ss_dssp CGGGC-SEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEE
T ss_pred CCCCC-CEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEe
Confidence 98 5 799999999999999999875544433 3456789999996 4667999999999999999
Q ss_pred CCccc---cceeeeCcccceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCce----eeeeccCCcCcEEEEEEcCCCC
Q 012994 276 RKLDE---AKCVHMGHESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGGRS----REIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 276 ~~~~~---~~~~~~~~~~~v~~~~~s~~---g~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
+.... ....+.+|...|++++|+|+ +++|++++.||.|++||+.++.. .......+...|++++|+|+++
T Consensus 190 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 269 (379)
T 3jrp_A 190 NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN 269 (379)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCC
Confidence 76543 33455689999999999999 89999999999999999998742 2222233567899999999999
Q ss_pred EEEEeeCCCcEEEeecccccc
Q 012994 346 YVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 346 ~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+|++++.||.|++|++..+..
T Consensus 270 ~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 270 VLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CEEEEESSSSEEEEEEEETTE
T ss_pred EEEEecCCCcEEEEeCCCCCc
Confidence 999999999999999986543
No 61
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-38 Score=314.54 Aligned_cols=328 Identities=9% Similarity=0.075 Sum_probs=234.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (452)
.++|....++.......+++|+.........+ .|...|.+++|+| + .+|++++.|++|++||+.+++.+..+. |.+
T Consensus 24 afspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~ 99 (902)
T 2oaj_A 24 AFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVF-VPG 99 (902)
T ss_dssp EEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEE-CSS
T ss_pred EECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEc-CCC
Confidence 35565665555555667788887665554444 4889999999999 7 799999999999999999999988886 778
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC-eeEEEecCCeeeeeecCCC-CeEEEeC--CeEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP-LAVYVWKNSFWAVDHQWEG-DLFATAG--AQVD 186 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~ 186 (452)
.|++++|+|++++|++|+.||+|++||+.++..... ..... ... .....+...+.+++|+|++ ..+++++ +.+
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~-~i~~~-~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF-KLDNL-QKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE-EECCH-HHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc-eeccc-cccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 999999999999999999999999999987643100 00000 000 0001245678999999964 5666665 568
Q ss_pred EEeCCCCCcceecccC------------------CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe----
Q 012994 187 IWNHNRSQPINSFQWG------------------TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM---- 244 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~------------------~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 244 (452)
+||+.+++.+..+..| ...|.+++|+|++ .+|++|+.||.|++||+++++.+.....
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~ 255 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHMIMARTVFETE 255 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCEEEEECSSCSC
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEEeecccc
Confidence 9999999888777655 4679999999997 7999999999999999987765432110
Q ss_pred ---------------ecccceEEEcc----CCCceEEee-----------------------------------------
Q 012994 245 ---------------RTKSNSISWNP----MEPMNFTAA----------------------------------------- 264 (452)
Q Consensus 245 ---------------~~~~~~~~~~~----~~~~~~~~~----------------------------------------- 264 (452)
...+.+++|++ ++..+++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 335 (902)
T 2oaj_A 256 INVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMK 335 (902)
T ss_dssp TTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEE
T ss_pred cCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceE
Confidence 11345555633 222333333
Q ss_pred -----------------------------------cCCCeEEEEeCCCccccce--------------------------
Q 012994 265 -----------------------------------NEDCNCYSYDSRKLDEAKC-------------------------- 283 (452)
Q Consensus 265 -----------------------------------~~~~~i~~~d~~~~~~~~~-------------------------- 283 (452)
+.++.+++||+.+......
T Consensus 336 ~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~ 415 (902)
T 2oaj_A 336 IFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNK 415 (902)
T ss_dssp EECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHH
T ss_pred EEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHH
Confidence 3345555665532211000
Q ss_pred --------------eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee--eec--------cCCcCcEEEEE
Q 012994 284 --------------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE--IYH--------TKRMQRVFCVK 339 (452)
Q Consensus 284 --------------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~--~~~--------~~~~~~v~~~~ 339 (452)
.+.+|...+.+++|+|+|++|++|+.||+|++||+.++.... .+. ..|...|++++
T Consensus 416 ~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~sva 495 (902)
T 2oaj_A 416 LWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495 (902)
T ss_dssp HHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEE
T ss_pred HHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEE
Confidence 012333444555668999999999999999999999875321 111 15667899999
Q ss_pred EcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
|+||+++|++|+.||+|+||++.+++.
T Consensus 496 fspdg~~LAsgs~DgtV~lwd~~~~~~ 522 (902)
T 2oaj_A 496 FAAETLELAVSIETGDVVLFKYEVNQF 522 (902)
T ss_dssp EETTTTEEEEEETTSCEEEEEEEECCC
T ss_pred ecCCCCeEEEEecCcEEEEEEecCccc
Confidence 999999999999999999999988753
No 62
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=281.49 Aligned_cols=295 Identities=17% Similarity=0.272 Sum_probs=228.2
Q ss_pred CceEEEeecCCC-CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCe
Q 012994 99 RRTVCQYSGHQG-AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL 177 (452)
Q Consensus 99 ~~~~~~~~~h~~-~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (452)
.+.+..+.+|.. .|.+++|+|++++|++|+.|++|+|||+..+.... .......+...+.+++|+|++.+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~---------~~~~~~~h~~~v~~~~~sp~g~~ 75 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC---------KSVLSEGHQRTVRKVAWSPCGNY 75 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE---------EEEECSSCSSCEEEEEECTTSSE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee---------eeeeccccCCcEEEEEECCCCCE
Confidence 356778889988 99999999999999999999999999987552110 00001235678999999999999
Q ss_pred EEEeC--CeEEEEeCCCCC--cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE----eecccc
Q 012994 178 FATAG--AQVDIWNHNRSQ--PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI----MRTKSN 249 (452)
Q Consensus 178 ~~~~~--~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~ 249 (452)
+++++ +.+++|+...+. .+..+.+|...|.+++|+|++ ++|++|+.|+.|++||++......... +...+.
T Consensus 76 l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEE
T ss_pred EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeE
Confidence 99986 679999988764 567888999999999999988 799999999999999998775443222 245678
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCCccc-cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRKLDE-AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG------- 321 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~------- 321 (452)
+++|+|++. ++++++.|+.+++||...... ....+.+|...|++++|+|+|++|++|+.||.|++||....
T Consensus 155 ~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~ 233 (345)
T 3fm0_A 155 HVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVA 233 (345)
T ss_dssp EEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCC
T ss_pred EEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccce
Confidence 899999876 488899999999999876542 33456789999999999999999999999999999996432
Q ss_pred --------ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCcc
Q 012994 322 --------RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPE 393 (452)
Q Consensus 322 --------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
.++..+...|...|.+++|+|++.+|++++.|+.|++|+...+........... .....+|...
T Consensus 234 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--------~~~~~~h~~~ 305 (345)
T 3fm0_A 234 CSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--------AHLHQAHSQD 305 (345)
T ss_dssp CC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--------EEETTSSSSC
T ss_pred eeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--------eeecccccCc
Confidence 122233444667899999999999999999999999999876543211100000 0001268889
Q ss_pred ccccccCCCCChhhHHHHH
Q 012994 394 IKRIVRHRHLPKPIYKAAS 412 (452)
Q Consensus 394 ~~~~~~~~~~p~~~~~~~~ 412 (452)
|.+++|+|..+.++.+++.
T Consensus 306 V~~v~~~p~~~~~laS~s~ 324 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSD 324 (345)
T ss_dssp EEEEEECSSSTTEEEEEET
T ss_pred EeEeEEeCCCceEEEEcCC
Confidence 9999999998766655443
No 63
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.6e-36 Score=280.00 Aligned_cols=280 Identities=14% Similarity=0.258 Sum_probs=225.6
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
.++.|+|+++ ++||+|. |++|+|||..+++....+. +|...|++|+|+|+|++|++|+.||+|++||+.+++...
T Consensus 107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 107 YLNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TCBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 3678999986 6777765 9999999999998876654 677889999999999999999999999999998775432
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC-CcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
. ...+...+.++. +++.++++++ +.+.+||.... ..+..+..|...+..+.++|++ .+++++
T Consensus 184 ~------------~~~h~~~v~~~s--~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~ 248 (420)
T 4gga_A 184 N------------MTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASG 248 (420)
T ss_dssp E------------ECCCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEE
T ss_pred E------------EeCCCCceEEEe--eCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-Ceeeee
Confidence 2 222334455544 4567888776 57999998864 4557788899999999999988 799999
Q ss_pred ecCCeEEEEEccCCCCc----eEE-EeecccceEEEccCCCceEEe--ecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 223 ASDRSITLYDLRMSSPA----RKV-IMRTKSNSISWNPMEPMNFTA--ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
+.||.+++||...+... ... .....+..++|+|.+..++++ |+.|+.|++||+.+....... .+...+.++
T Consensus 249 ~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--~~~~~v~~~ 326 (420)
T 4gga_A 249 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSI 326 (420)
T ss_dssp ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--ECSSCEEEE
T ss_pred eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--ccccceeee
Confidence 99999999999876532 222 234567899999999888766 457999999999887654443 344678999
Q ss_pred EEcCCCCEEEEEe--CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 296 DYSPTGREFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 296 ~~s~~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
.|+|+++.+++++ .||.|+|||+.+++.+..+.. |.+.|++++|+|||++|+||+.||+|+|||+.......
T Consensus 327 ~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g-H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 9999999988765 789999999999998888754 56899999999999999999999999999997765443
No 64
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-36 Score=284.61 Aligned_cols=302 Identities=19% Similarity=0.274 Sum_probs=246.9
Q ss_pred ccccccccccccE-EEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 57 PFIGALDGHRDGI-SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 57 ~~~~~l~~h~~~V-~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
+....+.+|.+.| .|+.++ + ++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred cceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 4556889999885 777774 4 789999999999999999999999999999999999999987 9999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec--CCCCeEEEeC--CeEEEEeCCCCCc----------------
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ--WEGDLFATAG--AQVDIWNHNRSQP---------------- 195 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~i~i~d~~~~~~---------------- 195 (452)
||+.++... .....+...+.+++++ +++.++++++ +.+.+||+.++..
T Consensus 188 wd~~~~~~~------------~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 255 (464)
T 3v7d_B 188 WDIKKGCCT------------HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 255 (464)
T ss_dssp EETTTTEEE------------EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESC
T ss_pred EECCCCcEE------------EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeec
Confidence 999876432 2222356788888887 5777888876 6799999988753
Q ss_pred -------ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCC
Q 012994 196 -------INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 196 -------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+..+.+|...+.++. +++ .++++|+.||.|++||+++.+....+. +...+.++.|+|++.. +++++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~--~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~sg~~d 331 (464)
T 3v7d_B 256 PEENPYFVGVLRGHMASVRTVS--GHG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR-CISASMD 331 (464)
T ss_dssp GGGCTTEEEEECCCSSCEEEEE--EET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTE-EEEEETT
T ss_pred cCCCeEEEEEccCccceEEEEc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCE-EEEEeCC
Confidence 335666778888774 444 789999999999999999888777765 3566789999998765 7889999
Q ss_pred CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEE
Q 012994 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV 347 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 347 (452)
+.+++||+++... ...+.+|...|.+++|+ +++|++|+.||.|++||+.++....... +...+..++|++++++|
T Consensus 332 g~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 332 TTIRIWDLENGEL-MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNIL 406 (464)
T ss_dssp SCEEEEETTTTEE-EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEE
T ss_pred CcEEEEECCCCcE-EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEE
Confidence 9999999987553 44556899999999997 5799999999999999999887655553 33568888999999999
Q ss_pred EEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccC
Q 012994 348 ISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH 400 (452)
Q Consensus 348 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (452)
++|+ ||.|++||+.+++.+..+.. .+...+..++++
T Consensus 407 ~~~~-dg~i~iwd~~~g~~~~~~~~----------------~~~~~v~~v~~~ 442 (464)
T 3v7d_B 407 VSGS-ENQFNIYNLRSGKLVHANIL----------------KDADQIWSVNFK 442 (464)
T ss_dssp EEEE-TTEEEEEETTTCCEEESCTT----------------TTCSEEEEEEEE
T ss_pred EEec-CCeEEEEECCCCcEEehhhc----------------cCCCcEEEEEec
Confidence 9988 89999999999998865321 445667777775
No 65
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-36 Score=268.65 Aligned_cols=278 Identities=18% Similarity=0.329 Sum_probs=233.9
Q ss_pred CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
......+.+|...|++++|+|++++|++++.||.|++|++.++... .....+...+.+++|+|++.++
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~l 80 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------------KTISGHKLGISDVAWSSDSNLL 80 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE------------EEECCCSSCEEEEEECTTSSEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc------------hhhccCCCceEEEEEcCCCCEE
Confidence 3456778899999999999999999999999999999999776432 2233456788999999999999
Q ss_pred EEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEcc
Q 012994 179 ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNP 255 (452)
Q Consensus 179 ~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~ 255 (452)
++++ +.+++||+.+++.+..+..|...|.++.|+|++ .++++|+.||.|++||+++++....+.. ...+.++.|+|
T Consensus 81 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 9886 679999999999999999999999999999988 7999999999999999998887776654 45678899999
Q ss_pred CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC--
Q 012994 256 MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ-- 333 (452)
Q Consensus 256 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 333 (452)
++. .+++++.++.+++||+++..........+...+..++|+|++++|++++.||.|++||+.+++....+..+...
T Consensus 160 ~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 238 (312)
T 4ery_A 160 DGS-LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238 (312)
T ss_dssp TSS-EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSS
T ss_pred CCC-EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceE
Confidence 876 57888999999999999876666666677788999999999999999999999999999999887776544321
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
.+......+++.+|++|+.||.|++||+.+++.+..+. +|...+..++++|..+.++
T Consensus 239 ~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-----------------~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ-----------------GHTDVVISTACHPTENIIA 295 (312)
T ss_dssp CCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC-----------------CCSSCEEEEEECSSSSEEE
T ss_pred EEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh-----------------ccCCcEEEEeecCcCCceE
Confidence 23333344688999999999999999999988876664 6777889999999877554
No 66
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.4e-37 Score=277.44 Aligned_cols=272 Identities=22% Similarity=0.318 Sum_probs=216.2
Q ss_pred hhhhhhhHhhhhHHHhhhhhcc-------ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec
Q 012994 35 QEKAVEYVRALTAAKLEKIFAR-------PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG 107 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 107 (452)
....+........+++|++... .....+.+|...|++++|+|++ .++++|+.|++|++||+.+++.+..+.+
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~ 116 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRFVG 116 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEEEC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence 3334444555667788887532 3456789999999999999998 9999999999999999999999999999
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC----------Ce
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG----------DL 177 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 177 (452)
|...|.+++|+|++++|++++.|++|++||+.......... . ..+...+.++.|+|++ .+
T Consensus 117 h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 186 (343)
T 2xzm_R 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE-K---------ENHSDWVSCVRYSPIMKSANKVQPFAPY 186 (343)
T ss_dssp CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCT-T---------TSCSSCEEEEEECCCCCSCSCCCSSCCE
T ss_pred CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeec-c---------cCCCceeeeeeeccccccccccCCCCCE
Confidence 99999999999999999999999999999986321110000 0 0234567788888876 67
Q ss_pred EEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC-CCCceEEEeecccceEEEc
Q 012994 178 FATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKVIMRTKSNSISWN 254 (452)
Q Consensus 178 ~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 254 (452)
+++++ +.|++|| ...+....+..|...|.+++|+|++ .+|++|+.||.|++||+.. ......+.....+.+++|+
T Consensus 187 l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~s 264 (343)
T 2xzm_R 187 FASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFN 264 (343)
T ss_dssp EEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEEC
T ss_pred EEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEEC
Confidence 77775 6899999 4556677788899999999999988 7999999999999999954 4455555566778999999
Q ss_pred cCCCceEEeecCCCeEEEEeCCCccccce-ee-----------eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 255 PMEPMNFTAANEDCNCYSYDSRKLDEAKC-VH-----------MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~-----------~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
|++.. + +++.++.+++||+.+...... .+ .+|...|++++|+|+|++|++|+.||.|++|++.++
T Consensus 265 p~~~~-l-a~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 265 PKLQW-V-AVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCE-E-EEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCE-E-EEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 98754 3 445678899999876543221 11 267888999999999999999999999999998754
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-36 Score=295.04 Aligned_cols=299 Identities=14% Similarity=0.189 Sum_probs=250.2
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCC-eeEEEEcc--CCCeEEEEeCCCcEEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGA-VRGLTVST--DGRILVSCGTDCTVKL 135 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~-v~~l~~~~--~~~~l~s~~~dg~v~i 135 (452)
..|.+.|++++|+|++ ++|++++ ++.|++||+.++ +....+.+|... |++++|+| ++++|++++.||.|++
T Consensus 15 ~~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 4689999999999999 8999988 889999999998 889999999999 99999999 9999999999999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC------eEEEEeCCCCCcceecccCCCceEEE
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA------QVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
||+.++...... ..........+...+.+++|+|++.++++++. .+.+|| .++.+..+..|...|.++
T Consensus 93 w~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 93 WGWTFDKESNSV----EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEEEGGGTEE----EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEE
T ss_pred EeCCCCcccccc----cccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEE
Confidence 999644100000 00111223335778999999999999998873 455665 778888999999999999
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-c---ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-T---KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH 285 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 285 (452)
+|+|+++.++++++.||.|++||+.+.+....+... . .+.+++|+|++...+++++.++.+++||+.+........
T Consensus 167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 246 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 246 (615)
T ss_dssp EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence 999998668999999999999999888877776643 3 578999999955568889999999999998766555443
Q ss_pred e---CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC---CcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 286 M---GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK---RMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 286 ~---~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
. .|...|.+++|+ ++++|++++.||.|++||+.+++....+... ....+.++.|+ ++.++++++.||.|++|
T Consensus 247 ~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~ 324 (615)
T 1pgu_A 247 DDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFY 324 (615)
T ss_dssp BTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEE
T ss_pred ccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEE
Confidence 5 899999999999 9999999999999999999999887776544 23578888886 89999999999999999
Q ss_pred ecccccccccCC
Q 012994 360 KAKASEQLGVLH 371 (452)
Q Consensus 360 ~~~~~~~~~~~~ 371 (452)
|+.+++.+..+.
T Consensus 325 d~~~~~~~~~~~ 336 (615)
T 1pgu_A 325 ELGHDEVLKTIS 336 (615)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999988877665
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-37 Score=324.77 Aligned_cols=349 Identities=15% Similarity=0.174 Sum_probs=284.4
Q ss_pred hHHHhhhhhccccccccc-cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 46 TAAKLEKIFARPFIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
..+.+|+......+..+. +|.+.|.+++|+|++ .++++|+.||.|++||+.++..+..+.+|.+.|.+++|+|++++|
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEE
Confidence 445567776666666654 899999999999998 999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCCCCCC-------------------------CCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 125 VSCGTDCTVKLWNVPVATLTDSDDSTD-------------------------NSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 125 ~s~~~dg~v~iwd~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
++++.||.|++||+............. ..............+.+++++|++.+++
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~ 977 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVA 977 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEE
T ss_pred EEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEE
Confidence 999999999999975432111100000 0001111223355788999999999999
Q ss_pred EeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCC
Q 012994 180 TAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPME 257 (452)
Q Consensus 180 ~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (452)
+++ |.+.+||+.+++....+..|...|.+++|+|++ .++++++.||.|++||+.++.......+...+.++.++|++
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG-KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS-SCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred EEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence 886 679999999999999999999999999999988 78999999999999999988776655566778889999854
Q ss_pred CceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEE
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFC 337 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 337 (452)
.+++++.++.+++||..+.... ..+.+|...|++++|+|+|++|++++.||.|++||+.++.....+.. |...|++
T Consensus 1057 --~l~~~~~dg~v~vwd~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~-h~~~v~~ 1132 (1249)
T 3sfz_A 1057 --RLLSWSFDGTVKVWNVITGRIE-RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG-HNGCVRC 1132 (1249)
T ss_dssp --EEEEEESSSEEEEEETTTTCCC-EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCC-CSSCEEE
T ss_pred --cEEEEECCCcEEEEECCCCcee-EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeecc-CCCcEEE
Confidence 4788999999999999876543 45568999999999999999999999999999999999887776654 4588999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhhH
Q 012994 338 VKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPIY 408 (452)
Q Consensus 338 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 408 (452)
++|+|+|++|++|+.||.|++||+.+++.+..+.+..... ....|...+..++|.|+-..++.
T Consensus 1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEE--------GTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC---------------CCSCCCEEEECTTSSCEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccc--------cccccCceEEEEEECCCCCEEEE
Confidence 9999999999999999999999999999887764322111 11367788999999998775553
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.2e-36 Score=278.39 Aligned_cols=323 Identities=19% Similarity=0.318 Sum_probs=257.3
Q ss_pred hhHhhhhHHHhhhhhccccccccccccccE-EEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEc
Q 012994 40 EYVRALTAAKLEKIFARPFIGALDGHRDGI-SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V-~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 118 (452)
.|.+.......|..-.......+.+|.+.| .|+.+ ++ ++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+
T Consensus 92 ~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~--~g-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 168 (445)
T 2ovr_B 92 AYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQF--CG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 168 (445)
T ss_dssp HHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEE--ET-TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE
T ss_pred HHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEE--cC-CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec
Confidence 344444444566655445567889999875 66555 56 899999999999999999999999999999999999997
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcc
Q 012994 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI 196 (452)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~ 196 (452)
+++|++|+.||+|++||+.+++... ....+...+.++.++ +..+++++ +.+.+||+.+++.+
T Consensus 169 --~~~l~s~~~dg~i~vwd~~~~~~~~------------~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~ 232 (445)
T 2ovr_B 169 --DNIIISGSTDRTLKVWNAETGECIH------------TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCL 232 (445)
T ss_dssp --TTEEEEEETTSCEEEEETTTTEEEE------------EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEE
T ss_pred --CCEEEEEeCCCeEEEEECCcCcEEE------------EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEE
Confidence 5699999999999999998774322 222355677788875 44566554 78999999999999
Q ss_pred eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
..+..|...|.++.+ ++ .++++|+.||.|++||+++......+.. ...+.++.+ ....+++++.++.+++||+
T Consensus 233 ~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 233 HVLMGHVAAVRCVQY--DG-RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp EEEECCSSCEEEEEE--CS-SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEET
T ss_pred EEEcCCcccEEEEEE--CC-CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEEC
Confidence 999999999999999 34 6899999999999999999887776653 345667777 4556899999999999999
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc--CCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT--KRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
++.... ..+.+|...+.++.+ ++++|++|+.||.|++||+.+++....+.. .|...|++++|+ +++|++|+.|
T Consensus 307 ~~~~~~-~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 307 ETGNCI-HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp TTCCEE-EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred CCCCEE-EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 876544 445688888988877 467999999999999999999988777654 356889999995 6799999999
Q ss_pred CcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 354 TNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 354 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
|.|++||+.+++.+..+..... ..+...+..++++|...
T Consensus 382 g~v~iwd~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 382 GTVKLWDLKTGEFIRNLVTLES------------GGSGGVVWRIRASNTKL 420 (445)
T ss_dssp SEEEEEETTTCCEEEEEEECTT------------GGGTCEEEEEEECSSEE
T ss_pred CeEEEEECCCCceeeeeecccc------------CCCCceEEEEEecCCEE
Confidence 9999999999998876632110 15567788888888644
No 70
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=6.9e-36 Score=265.45 Aligned_cols=275 Identities=14% Similarity=0.260 Sum_probs=220.3
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
.++|+||++ ++||+| .|++|+|||+.+++.+..+. +|...|++++|+|++++|++|+.||+|++||+.+++....
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 578999987 466665 59999999999999877664 6778899999999999999999999999999987743222
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCC-CcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRS-QPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
...+...+ ..+++++.++++++ +.+.+|+.... ..+..+..|...+..+.+.+++ .++++++
T Consensus 105 ------------~~~h~~~~--~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~ 169 (318)
T 4ggc_A 105 ------------MTSHSARV--GSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGG 169 (318)
T ss_dssp ------------EECCSSCE--EEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEE
T ss_pred ------------ecCccceE--EEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEe
Confidence 22223333 34555667777776 56888888765 4556778899999999999988 7899999
Q ss_pred cCCeEEEEEccCCCCceE-----EEeecccceEEEccCCCceEE--eecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 224 SDRSITLYDLRMSSPARK-----VIMRTKSNSISWNPMEPMNFT--AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
.||.|++||+++++.... ......+..+.++|.+..++. +++.++.+++||......... ..+...+..+.
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~--~~~~~~v~~~~ 247 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA--VDAHSQVCSIL 247 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE--EECSSCEEEEE
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc--ccceeeeeeee
Confidence 999999999987654322 123445678889998887654 567789999999987654433 35667899999
Q ss_pred EcCCCCEEEEEe--CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 297 YSPTGREFVTGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 297 ~s~~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
|+|++..+++++ .||.|++||+.+++.+..+.. |.+.|++++|+|+|++|+||+.||+|+|||+.+.
T Consensus 248 ~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g-H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 248 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG-HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred ecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 999999887655 799999999999999888754 5589999999999999999999999999998754
No 71
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-36 Score=276.05 Aligned_cols=276 Identities=19% Similarity=0.327 Sum_probs=222.0
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCC---CCe---eEEEecCCeeeeeecCCCCeEEE
Q 012994 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS---EPL---AVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
+|.+.|.+++|+|+|++|++|+ ++.+++|++.++.....+....... ... ........+.+++|+|++.++++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999976 6899999998876544332211100 000 00112234889999999999998
Q ss_pred eC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCC
Q 012994 181 AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEP 258 (452)
Q Consensus 181 ~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (452)
++ +.|++||+.+++.+..+.+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.....+..++++|...
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 219 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCC
Confidence 86 679999999999999999999999999999988 789999999999999999998888888888889999999777
Q ss_pred ceEEeecCCCeEEEEeCCCcccccee------eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce---------
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCV------HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--------- 323 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~------~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--------- 323 (452)
.++++++.|+.+++||.++....... ..+|...|++++|+|+|++|++|+.||.|++||+.+...
T Consensus 220 ~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~ 299 (393)
T 1erj_A 220 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299 (393)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCC
Confidence 78999999999999999875433322 147899999999999999999999999999999976432
Q ss_pred ---eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccC
Q 012994 324 ---REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRH 400 (452)
Q Consensus 324 ---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (452)
...+ .+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+. +|...|..++++
T Consensus 300 ~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~-----------------~h~~~v~~v~~~ 361 (393)
T 1erj_A 300 GTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-----------------GHRNSVISVAVA 361 (393)
T ss_dssp -CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-----------------CCSSCEEEEEEC
T ss_pred CcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC-----------------CCCCCEEEEEec
Confidence 2222 3455789999999999999999999999999999998876553 567778888877
Q ss_pred CC
Q 012994 401 RH 402 (452)
Q Consensus 401 ~~ 402 (452)
+.
T Consensus 362 ~~ 363 (393)
T 1erj_A 362 NG 363 (393)
T ss_dssp SS
T ss_pred CC
Confidence 63
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-37 Score=311.14 Aligned_cols=337 Identities=9% Similarity=0.035 Sum_probs=241.4
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccc-----------cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFI-----------GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR 100 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~ 100 (452)
++|.............+++|++....+. ..+.+|.+.|++++|+|++...|++|+.||.| +||+.+++
T Consensus 106 ~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 106 TDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp CCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc
Confidence 4555555544455566778887655442 45688999999999999754789999999999 99999999
Q ss_pred eEEEeecC------------------CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC--CC---CCC------
Q 012994 101 TVCQYSGH------------------QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS--DD---STD------ 151 (452)
Q Consensus 101 ~~~~~~~h------------------~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~---~~~------ 151 (452)
.+..+..| ...|++++|+|+|++|++++.||+|++||+.+++.... +. ...
T Consensus 185 ~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~ 264 (902)
T 2oaj_A 185 IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI 264 (902)
T ss_dssp EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence 88888765 57899999999999999999999999999988765321 10 000
Q ss_pred ----CCCCCeeEEEe--------------------------------------------------------------cCC
Q 012994 152 ----NSSEPLAVYVW--------------------------------------------------------------KNS 165 (452)
Q Consensus 152 ----~~~~~~~~~~~--------------------------------------------------------------~~~ 165 (452)
.....+....+ ...
T Consensus 265 ~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 344 (902)
T 2oaj_A 265 RDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVP 344 (902)
T ss_dssp CCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSC
T ss_pred CCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCc
Confidence 00000100000 011
Q ss_pred eeeeeecC----------CCCeEEEe--CCeEEEEeCCCCCccee-------cccCCCceEE------------------
Q 012994 166 FWAVDHQW----------EGDLFATA--GAQVDIWNHNRSQPINS-------FQWGTDTVIS------------------ 208 (452)
Q Consensus 166 ~~~~~~~~----------~~~~~~~~--~~~i~i~d~~~~~~~~~-------~~~~~~~i~~------------------ 208 (452)
+..+.+.+ +...+++. ++.+++||+.++..... +..|...|++
T Consensus 345 v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~ 424 (902)
T 2oaj_A 345 IVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA 424 (902)
T ss_dssp EEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT
T ss_pred eEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc
Confidence 11222211 12233332 36799999877643221 2223344444
Q ss_pred ----------------EEECCCCCcEEEEEecCCeEEEEEccCCCCc--eEEE----------eecccceEEEccCCCce
Q 012994 209 ----------------VRFNPAEPNVLATTASDRSITLYDLRMSSPA--RKVI----------MRTKSNSISWNPMEPMN 260 (452)
Q Consensus 209 ----------------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~ 260 (452)
++|+|++ ++|++|+.||+|++||+.++... ..+. +...+.+++|+|++..
T Consensus 425 ~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~- 502 (902)
T 2oaj_A 425 QNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLE- 502 (902)
T ss_dssp BCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTE-
T ss_pred cCCCCcccCCcCCCCcccccccC-cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCe-
Confidence 4556766 79999999999999999887432 1121 2346789999999885
Q ss_pred EEeecCCCeEEEEeCCCcc--------------------------------------------ccceeeeCcccceEEEE
Q 012994 261 FTAANEDCNCYSYDSRKLD--------------------------------------------EAKCVHMGHESAVMDID 296 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~--------------------------------------------~~~~~~~~~~~~v~~~~ 296 (452)
+++++.|+.|++||..... .....+.+|.+.|++++
T Consensus 503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva 582 (902)
T 2oaj_A 503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN 582 (902)
T ss_dssp EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence 8899999999999987542 12345668999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeee--e--c-cCCcCcEEEEEEc-----CCC---CEEEEeeCCCcEEEeec--
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREI--Y--H-TKRMQRVFCVKFS-----CDA---SYVISGSDDTNLRLWKA-- 361 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~--~--~-~~~~~~v~~~~~s-----~~~---~~l~s~~~dg~i~iw~~-- 361 (452)
||||| +||+|+.|++|++||++++..+.. . . .+|...|++++|+ ||| ++|++|+.||+|++||+
T Consensus 583 fSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 583 NSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp ECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred ecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEec
Confidence 99999 999999999999999988765431 1 2 2566889999999 885 89999999999999999
Q ss_pred -ccccccccCCh
Q 012994 362 -KASEQLGVLHP 372 (452)
Q Consensus 362 -~~~~~~~~~~~ 372 (452)
.+|+.+..+..
T Consensus 662 ~~~g~~~~~~~~ 673 (902)
T 2oaj_A 662 ASGGKFDVQLMD 673 (902)
T ss_dssp CGGGCEEEEEEE
T ss_pred CCCCcEEEEecC
Confidence 78887766654
No 73
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.7e-36 Score=278.79 Aligned_cols=309 Identities=16% Similarity=0.239 Sum_probs=247.2
Q ss_pred hHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEc--
Q 012994 41 YVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVS-- 118 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-- 118 (452)
.......+++|+..+...+..+.+|.+.|++++|+|++ +|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+
T Consensus 137 sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEES
T ss_pred EEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecC
Confidence 33445567899998999999999999999999999984 89999999999999999999999999999999999998
Q ss_pred cCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCC--------C---CeeEEEecCCeeeeeecCCCCeEEEeC--CeE
Q 012994 119 TDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSS--------E---PLAVYVWKNSFWAVDHQWEGDLFATAG--AQV 185 (452)
Q Consensus 119 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i 185 (452)
+++.+|++++.||+|++||+.++............. . ......+...+.+ +++++.++++++ +.|
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d~~i 292 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTL 292 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETTSCE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCCCeE
Confidence 477899999999999999998775443221111000 0 0111122333433 467788888876 679
Q ss_pred EEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEee
Q 012994 186 DIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 264 (452)
++||+.+++.+..+..|...|.+++|+|++ ..+++|+.||.|++||+++++.+..+.. ...+.++.++ +..++++
T Consensus 293 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~ 368 (464)
T 3v7d_B 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS---DKFLVSA 368 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---SSEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc---CCEEEEE
Confidence 999999999999999999999999999988 7899999999999999999887777653 4556777776 3679999
Q ss_pred cCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
+.|+.+++||+.+....... .+...+..++|+|++++|++|+ ||.|++||+.+++.+......+...|++++|+ +.
T Consensus 369 s~dg~v~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~ 444 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GK 444 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEE--ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TT
T ss_pred eCCCcEEEEECCCCceeeee--cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CC
Confidence 99999999999876544333 4666788899999999999998 99999999999998887656667899999997 44
Q ss_pred CEEEEeeCCCcEEEeec
Q 012994 345 SYVISGSDDTNLRLWKA 361 (452)
Q Consensus 345 ~~l~s~~~dg~i~iw~~ 361 (452)
.++++++.||.+.+|-+
T Consensus 445 ~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 445 TLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEEEEETTEEEEEEE
T ss_pred EEEEEEEeCCeEEEEEe
Confidence 55666677777665543
No 74
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-35 Score=275.98 Aligned_cols=296 Identities=17% Similarity=0.246 Sum_probs=246.2
Q ss_pred hHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC
Q 012994 41 YVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 120 (452)
.......+++|+..++..+..+.+|.+.|.+++|++ .++++|+.||.|++||+.+++.+..+.+|...|.++.|+
T Consensus 134 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 208 (445)
T 2ovr_B 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH-- 208 (445)
T ss_dssp EEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--
T ss_pred EEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--
Confidence 334455678899988999999999999999999983 689999999999999999999999999999999999996
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCccee
Q 012994 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINS 198 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~ 198 (452)
++.|++|+.||+|++||+.+++. ......+...+.++.+ ++..+++++ +.+.+||+.+++.+..
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 274 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQC------------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT 274 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCE------------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCcE------------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEE
Confidence 56899999999999999987632 2233345667888888 666777665 6799999999999999
Q ss_pred cccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCC
Q 012994 199 FQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 199 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 277 (452)
+..|...|.++.| ++ ..+++++.||.|++||+++++....+... ..+..+.+. +..+++++.|+.+++||+++
T Consensus 275 ~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~ 348 (445)
T 2ovr_B 275 LQGHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKT 348 (445)
T ss_dssp ECCCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTT
T ss_pred ecCCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCC
Confidence 9999999999999 34 78999999999999999998877666432 233444443 34789999999999999987
Q ss_pred ccccceeee--CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec----cCCcCcEEEEEEcCCCCEEEEee
Q 012994 278 LDEAKCVHM--GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH----TKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 278 ~~~~~~~~~--~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
......... .|...|++++|+ +++|++|+.||.|++||+.+++.+..+. ..+.+.|++++|+|++.+|++|+
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 654433322 388899999995 5799999999999999999998877662 34557899999999999999999
Q ss_pred CCCc----EEEeeccc
Q 012994 352 DDTN----LRLWKAKA 363 (452)
Q Consensus 352 ~dg~----i~iw~~~~ 363 (452)
.||. |.|||+..
T Consensus 427 ~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred cCCCCccEEEEEECCC
Confidence 9998 99999875
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.1e-36 Score=274.92 Aligned_cols=282 Identities=16% Similarity=0.194 Sum_probs=231.1
Q ss_pred hhhhHHHhhhhhcccccccccc-ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCC
Q 012994 43 RALTAAKLEKIFARPFIGALDG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDG 121 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 121 (452)
.....+.+|+...+.....+.. |.+.|++++|+|++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~ 186 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--R 186 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--T
T ss_pred ECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--C
Confidence 3445677888888887777765 89999999999998 999999999999999999999999999999999999994 5
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceec
Q 012994 122 RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSF 199 (452)
Q Consensus 122 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~ 199 (452)
++|++++.||.|++||+.... ........+...+.+++|++++.++++++ +.|++||+.+++.+..+
T Consensus 187 ~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 255 (401)
T 4aez_A 187 HVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK 255 (401)
T ss_dssp TEEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred CEEEEEcCCCCEEEEecccCc-----------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence 799999999999999997442 12334445678899999999999999886 67999999999999999
Q ss_pred ccCCCceEEEEECCCCCcEEEEEe--cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe-ecCCCeEEEEeCC
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTA--SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA-ANEDCNCYSYDSR 276 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~d~~ 276 (452)
..|...|.+++|+|++..++++++ .||.|++||++++.....+.....+.+++|+|++..++++ |..++.+++||+.
T Consensus 256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence 999999999999998878888876 7999999999999999988888889999999999887666 5589999999998
Q ss_pred Cccccc-eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 277 KLDEAK-CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 277 ~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
...... ....+|...|.+++|+|+|++|++++.||.|++||+.+++...........+...+
T Consensus 336 ~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~i 398 (401)
T 4aez_A 336 SSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSI 398 (401)
T ss_dssp TTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC------------------
T ss_pred CccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccccCCCccce
Confidence 754332 23568999999999999999999999999999999999887655433332333333
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-36 Score=284.17 Aligned_cols=294 Identities=12% Similarity=0.038 Sum_probs=220.4
Q ss_pred ccccEEEEEeCCCC-c-------ceEEE-------------------eeCCCcEEEEeCCCCceE----EEeecCCCCee
Q 012994 65 HRDGISCMAKNPNY-L-------KGFFS-------------------GSMDGDIRLWDIANRRTV----CQYSGHQGAVR 113 (452)
Q Consensus 65 h~~~V~~~~~~~~~-~-------~~l~t-------------------g~~dg~i~iwd~~~~~~~----~~~~~h~~~v~ 113 (452)
+.+.|.+|+|+|++ . ++||+ ++.|++|+|||+.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 57889999999874 1 45555 557889999999877642 34667889999
Q ss_pred EEEEccC------CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC-eeEEEecCCeeeeeecCCCCeEEEeC--Ce
Q 012994 114 GLTVSTD------GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP-LAVYVWKNSFWAVDHQWEGDLFATAG--AQ 184 (452)
Q Consensus 114 ~l~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 184 (452)
+++|+|+ +.+||+++.||+|++||+..+........ ....+ .....+...+.+++|++++ .+++++ |.
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~--~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dgt 288 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK--MCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGF 288 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE--CCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce--eecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCE
Confidence 9999996 57999999999999999987643210000 00111 2233456789999999865 666665 68
Q ss_pred EEEEeCCCC-CcceecccCCCceEEE--EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec---ccceEEEccCCC
Q 012994 185 VDIWNHNRS-QPINSFQWGTDTVISV--RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT---KSNSISWNPMEP 258 (452)
Q Consensus 185 i~i~d~~~~-~~~~~~~~~~~~i~~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~ 258 (452)
|++||+.++ .+...+..|...|.++ .|+|++..+|++|+.||+|++||+++.+....+.... .+.+++|+|++.
T Consensus 289 V~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 289 VAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp EEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred EEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 999999976 4556688899999999 4666654789999999999999999887766665432 357899999877
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce--------------e
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS--------------R 324 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~--------------~ 324 (452)
. +++++.++.+++||.+...... .+.+|.+.|++++|||+|++|++|+.||+|++||+..+.. +
T Consensus 369 ~-l~s~~~d~tv~lwd~~~~~~~~-~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v 446 (524)
T 2j04_B 369 S-YIYSDGASSLRAVPSRAAFAVH-PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRL 446 (524)
T ss_dssp E-EEEECSSSEEEEEETTCTTCCE-EEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEE
T ss_pred e-EEEeCCCCcEEEEECcccccce-eeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEE
Confidence 5 7888899999999998865443 4558999999999999999999999999999998642100 0
Q ss_pred -ee----------------------------eccCCcCcEEEEEEcCCCC---EEEEeeCCCcEEEeeccc
Q 012994 325 -EI----------------------------YHTKRMQRVFCVKFSCDAS---YVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 325 -~~----------------------------~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~ 363 (452)
.. ...+|...|.+|+|+|++. +|++|+.||.|+||++.-
T Consensus 447 ~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 447 WKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 00 0112446789999999954 999999999999999863
No 77
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=269.39 Aligned_cols=267 Identities=17% Similarity=0.252 Sum_probs=202.5
Q ss_pred HhhhhHHHhhhhhcc--cccccc-cc-ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC-------CceEEEeecCCC
Q 012994 42 VRALTAAKLEKIFAR--PFIGAL-DG-HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN-------RRTVCQYSGHQG 110 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~--~~~~~l-~~-h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~-------~~~~~~~~~h~~ 110 (452)
......+++|++... ..+..+ .+ |.+.|++++|+|++ .+|++|+.|++|++||+.. .+.+..+.+|..
T Consensus 30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~ 108 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN 108 (330)
T ss_dssp EESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-------CCCEEEEEEC----
T ss_pred EcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC
Confidence 344556677877543 344455 44 99999999999998 9999999999999999853 356777889999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCe-eEEEecCCeeeeeecCCCCeEEEeC--CeEEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPL-AVYVWKNSFWAVDHQWEGDLFATAG--AQVDI 187 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i 187 (452)
.|.+++|+|++++|++|+.|++|++||+...... .... ....+...+.+++|+|++.++++++ +.|++
T Consensus 109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~i 179 (330)
T 2hes_X 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---------YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179 (330)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC---------CEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC---------eEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 9999999999999999999999999999533100 1112 2234567899999999999999986 67999
Q ss_pred EeCCCC--CcceecccCCCceEEEEECCCC-CcEEEEEecCCeEEEEEccCCCC--------ceEEE--eecccceEEEc
Q 012994 188 WNHNRS--QPINSFQWGTDTVISVRFNPAE-PNVLATTASDRSITLYDLRMSSP--------ARKVI--MRTKSNSISWN 254 (452)
Q Consensus 188 ~d~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~--~~~~~~~~~~~ 254 (452)
||..++ +++..+.+|...|.+++|+|++ ...|++|+.|++|++||++.... ...+. +...+.+++|+
T Consensus 180 W~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 180 WKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred EECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 998776 5778889999999999999983 25799999999999999976421 11111 34567789998
Q ss_pred cCCCceEEeecCCCeEEEEeCCCcc--ccceeeeCccc-ceEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 012994 255 PMEPMNFTAANEDCNCYSYDSRKLD--EAKCVHMGHES-AVMDIDYSP--TGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~-~v~~~~~s~--~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+.+ .+++++.|+.+++||..... .......+|.. .|.+++|+| ++++|++|+.||.|++||++.
T Consensus 260 ~~~--~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 260 FNG--LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTS--CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred CCC--EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 654 68899999999999987543 12223357776 899999999 789999999999999999864
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.4e-35 Score=273.43 Aligned_cols=278 Identities=19% Similarity=0.353 Sum_probs=223.5
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
...+|...|+|++| ++ ++|++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.||+|++||+.+
T Consensus 128 ~~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 33567788999998 55 89999999999999999999999999999999999999 678999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcc---eecccCCCceEEEEECCCC
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPI---NSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~~~~~ 215 (452)
++... ....+...+.++.+++ ..+++++ +.|.+||+.++... ..+.+|...|.++++. +
T Consensus 203 ~~~~~------------~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 266 (435)
T 1p22_A 203 GEMLN------------TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D 266 (435)
T ss_dssp CCEEE------------EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T
T ss_pred CcEEE------------EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C
Confidence 74322 2223456788888864 4666654 68999999988776 6677899999999993 3
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
+++++|+.||.|++||++++..+..+.. ...+.++.+. +..+++++.|+.|++||.++... ...+.+|...|.+
T Consensus 267 -~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~ 341 (435)
T 1p22_A 267 -KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRC 341 (435)
T ss_dssp -TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE
T ss_pred -CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEEE
Confidence 7899999999999999999988877763 3455667663 45799999999999999987644 3455689999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc---------eeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGR---------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
++| ++.+|++|+.||.|++||+.++. ....+ ..|...|++++| ++.+|++|+.||.|++||+.+..
T Consensus 342 ~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 342 IRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred EEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 999 78899999999999999997655 44444 345588999999 78899999999999999998876
Q ss_pred cccc
Q 012994 366 QLGV 369 (452)
Q Consensus 366 ~~~~ 369 (452)
....
T Consensus 417 ~~~~ 420 (435)
T 1p22_A 417 AAQA 420 (435)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
No 79
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.5e-35 Score=274.09 Aligned_cols=261 Identities=17% Similarity=0.275 Sum_probs=218.7
Q ss_pred cccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCC----------CceEEEeecCCCCeeEEEEccCCC-eEEEEe
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIAN----------RRTVCQYSGHQGAVRGLTVSTDGR-ILVSCG 128 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~ 128 (452)
..+.+|.+.|++++|+|++..+|++|+.||.|++||+.+ ...+..+.+|...|++++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456789999999999998448999999999999999976 567788899999999999999988 999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEE
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
.||.|++||+..+.... . .......+..|...|.+
T Consensus 202 ~dg~i~vwd~~~~~~~~------------~---------------------------------~~~~~~~~~~h~~~v~~ 236 (430)
T 2xyi_A 202 DDHTICLWDINATPKEH------------R---------------------------------VIDAKNIFTGHTAVVED 236 (430)
T ss_dssp TTSCEEEEETTSCCBGG------------G---------------------------------EEECSEEECCCSSCEEE
T ss_pred CCCeEEEEeCCCCCCCC------------c---------------------------------eeccceeecCCCCCEee
Confidence 99999999997642100 0 00113445568889999
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCC---CCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMS---SPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 284 (452)
++|+|.++.+|++++.||.|++||+++. .....+. +...+.+++|+|++..++++++.++.|.+||++........
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 316 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence 9999977789999999999999999987 4555553 45678899999999999999999999999999987777778
Q ss_pred eeCcccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-------------eeeeeccCCcCcEEEEEEcCCCC-EEEE
Q 012994 285 HMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGGR-------------SREIYHTKRMQRVFCVKFSCDAS-YVIS 349 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~s~~~~-~l~s 349 (452)
+..|...|++++|+|+++ +|++++.||.|++||+.... ........|...|++++|+|++. +|++
T Consensus 317 ~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 317 FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred eecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 888999999999999985 69999999999999998722 12223445567899999999999 8999
Q ss_pred eeCCCcEEEeeccccc
Q 012994 350 GSDDTNLRLWKAKASE 365 (452)
Q Consensus 350 ~~~dg~i~iw~~~~~~ 365 (452)
++.||.|+||++....
T Consensus 397 ~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 397 VSEDNIMQVWQMAENV 412 (430)
T ss_dssp EETTSEEEEEEECHHH
T ss_pred EECCCCEEEeEccccc
Confidence 9999999999997653
No 80
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.8e-36 Score=299.43 Aligned_cols=316 Identities=17% Similarity=0.184 Sum_probs=258.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (452)
.++|.+..+........+.+|+..++..+..+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++.+..+.+|.+
T Consensus 20 ~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 98 (814)
T 3mkq_A 20 DFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPD 98 (814)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEecCCC
Confidence 456666666555556678899998888999999999999999999998 9999999999999999999999999999999
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeC--CeEEE
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDI 187 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i 187 (452)
.|++++|+|++++|++++.||.|++||+.++.. .......+...+.+++|+| ++..+++++ +.|.+
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~v 167 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV 167 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE-----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce-----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 999999999999999999999999999976511 1223334567899999999 788888776 68999
Q ss_pred EeCCCCCcceecccCC-CceEEEEECC--CCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEe
Q 012994 188 WNHNRSQPINSFQWGT-DTVISVRFNP--AEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~-~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 263 (452)
||+.++.....+..+. ..+.+++|+| ++ .++++++.||.|++||++++.....+. +...+.+++|+|++. .+++
T Consensus 168 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~ 245 (814)
T 3mkq_A 168 WSLGQSTPNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIIS 245 (814)
T ss_dssp EETTCSSCSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS-EEEE
T ss_pred EECCCCcceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC-EEEE
Confidence 9999988887777655 8899999999 66 789999999999999999888777776 345678999999887 5888
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCceeeeec-------------
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR--EFVTGSYDRTIRIFQYNGGRSREIYH------------- 328 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~l~s~~~dg~i~iwd~~~~~~~~~~~------------- 328 (452)
++.++.+++||..+... ......|...+.+++|+|+|. +++++ .++.+.+|++..+.....+.
T Consensus 246 ~~~dg~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKV-EKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNA 323 (814)
T ss_dssp EETTSCEEEEETTTCSE-EEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECCTTS
T ss_pred EeCCCeEEEEECCCCcE-EEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECcccc
Confidence 88999999999987543 344557788999999999987 35555 47778899876532211110
Q ss_pred -----------------------------cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 329 -----------------------------TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 329 -----------------------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
..+...+.+++|+|+|++|++++ ||.+.+|++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~ 386 (814)
T 3mkq_A 324 AASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALA 386 (814)
T ss_dssp CTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTT
T ss_pred cceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcc
Confidence 11223578999999999999988 89999999754
No 81
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=8.6e-35 Score=261.71 Aligned_cols=292 Identities=10% Similarity=0.120 Sum_probs=213.0
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE-EEEe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCG 128 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~ 128 (452)
++.+...+.+..+.+|.+.|+|++|+|+| .+|++|+.+| +++||+.+++....... ..+..+++.++++.+ ++++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 78 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTG 78 (355)
T ss_dssp ----------------CCCCCEEEECTTS-SEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECS
T ss_pred cccccccCCccccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEEC
Confidence 34455556667789999999999999999 8999998775 78999988776655442 358888999888877 5677
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCC-CcceecccCCCceE
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS-QPINSFQWGTDTVI 207 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~ 207 (452)
.|++|++||+.+++ ......+...+.++.++++. ++++.++.+++||+.++ +.+..+.. ...
T Consensus 79 ~d~~v~iWd~~~~~-------------~~~~~~~~~~v~~v~~~~~~-~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 79 VKEVVHIWDDVKKQ-------------DVSRIKVDAPVKDLFLSREF-IVVSYGDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp STTEEEEEETTTTE-------------EEEEEECSSCEEEEEECSSE-EEEEETTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred CccEEEEEECCCCc-------------EEEEEECCCceEEEEEcCCE-EEEEEcCEEEEEECCCCceeeEEecc---CCc
Confidence 88999999998763 34445567788899998875 44456789999999998 77766665 444
Q ss_pred EEEECCCCCcEEEE--EecCCeEEEEEccCCC---------------C-ceEEE-eecccceEEEccCCCceEEeecCCC
Q 012994 208 SVRFNPAEPNVLAT--TASDRSITLYDLRMSS---------------P-ARKVI-MRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 208 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~---------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
.+++++ .++++ |+.||.|++||+++.. + ...+. +...+.+++|+|++. ++++++.|+
T Consensus 142 ~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~d~ 217 (355)
T 3vu4_A 142 VCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQDG 217 (355)
T ss_dssp EEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEETTC
T ss_pred eEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeCCC
Confidence 566666 34444 6889999999998765 1 33332 456788999999775 588999999
Q ss_pred e-EEEEeCCCccccceeeeC-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee--------------------
Q 012994 269 N-CYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI-------------------- 326 (452)
Q Consensus 269 ~-i~~~d~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~-------------------- 326 (452)
. +++||+++.........+ |...|++++|+|+|++|++++.|+.|++||+..+.....
T Consensus 218 ~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (355)
T 3vu4_A 218 TIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCN 297 (355)
T ss_dssp SEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEE
T ss_pred CEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeE
Confidence 8 999999987666555435 999999999999999999999999999999986532111
Q ss_pred --eccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 327 --YHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 327 --~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+..........++|++|+++|++++.||.+++|++..++.
T Consensus 298 ~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 298 FKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp EECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred EEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 0111112346799999999999999999999999987654
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.1e-34 Score=267.65 Aligned_cols=267 Identities=19% Similarity=0.283 Sum_probs=228.0
Q ss_pred hhHHHhhhhhcccccccc--ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCC
Q 012994 45 LTAAKLEKIFARPFIGAL--DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGR 122 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~ 122 (452)
...+++|+..++..+..+ .+|.+.|+||+|+|+| ++|++|+.||.|+|||+.+++.+..+.+|...+.++.|+ +.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~ 200 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY 200 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC
Confidence 456789999888877655 5788899999999999 999999999999999999999999999999999998885 67
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCC----cc
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQ----PI 196 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~----~~ 196 (452)
.|++|+.|+.+++||..... ........+...+..+.+++++.++++++ +.+.+|+..+++ .+
T Consensus 201 ~l~sgs~d~~i~~~d~~~~~-----------~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~ 269 (420)
T 4gga_A 201 ILSSGSRSGHIHHHDVRVAE-----------HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 269 (420)
T ss_dssp EEEEEETTSEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS
T ss_pred EEEEEeCCCceeEeeecccc-----------eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee
Confidence 99999999999999987542 12233445677889999999999999986 579999998765 34
Q ss_pred eecccCCCceEEEEECCCCCcEEEEE--ecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEee-cCCCeEEEE
Q 012994 197 NSFQWGTDTVISVRFNPAEPNVLATT--ASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAA-NEDCNCYSY 273 (452)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~ 273 (452)
.....|...|.+++|+|.+..+++++ +.|++|++||+.++.....+.....+.++.|+|++..+++++ ..++.|++|
T Consensus 270 ~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iw 349 (420)
T 4gga_A 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIW 349 (420)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEE
T ss_pred eeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEE
Confidence 56677889999999999988888764 479999999999999999998888999999999999877664 579999999
Q ss_pred eCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee
Q 012994 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI 326 (452)
Q Consensus 274 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~ 326 (452)
|..+.... ..+.+|.+.|++++|+|+|++|++|+.||+|+|||+........
T Consensus 350 d~~~~~~v-~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 350 KYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp ETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred ECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 99876544 45669999999999999999999999999999999987654433
No 83
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=2.4e-35 Score=270.72 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=231.9
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
....++++|+...++++|+.||.|+||++... ..+..+.+|.+.|++++|+| ++++|++|+.||+|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 45578999987445557899999999998654 23455788999999999999 99999999999999999998774
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC-CeEEEeC--CeEEEEeCCCCCcceec--ccCCCceEEEEECCCCCc
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSF--QWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~ 217 (452)
...... ........+...+.+++|+|++ .++++++ +.|++||+.+++.+..+ ..|...|.+++|+|++ .
T Consensus 116 ~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 189 (402)
T 2aq5_A 116 LVLPLR-----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-A 189 (402)
T ss_dssp CSSCBC-----SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-S
T ss_pred CccccC-----CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-C
Confidence 332110 1233445577899999999998 5787775 67999999999999888 7899999999999987 7
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEE-ee-c-ccceEEEccCCCceEEee---cCCCeEEEEeCCCccccceee-eCccc
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVI-MR-T-KSNSISWNPMEPMNFTAA---NEDCNCYSYDSRKLDEAKCVH-MGHES 290 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~~~~~---~~~~~i~~~d~~~~~~~~~~~-~~~~~ 290 (452)
+|++++.||.|++||++++.....+. .. . .+..+.|+|++. +++++ +.++.+.+||.+......... ..|..
T Consensus 190 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 268 (402)
T 2aq5_A 190 LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSS 268 (402)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCS
T ss_pred EEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCC
Confidence 89999999999999999988777763 22 2 267899999865 56666 789999999999876644333 36778
Q ss_pred ceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCce-eeee-ccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 291 AVMDIDYSPTGREFVT-GSYDRTIRIFQYNGGRS-REIY-HTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s-~~~dg~i~iwd~~~~~~-~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
.+.+++|+|++++|++ |+.||.|++||+.+++. ...+ ...+...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 269 ~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 269 GVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 8999999999999865 55799999999998873 2222 2224578999999999998764 467999999988654
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=292.07 Aligned_cols=256 Identities=21% Similarity=0.320 Sum_probs=210.1
Q ss_pred ccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC--CCceEEEeecCCCCeeEEEEccC--CCeEEEEeCCCcEE
Q 012994 59 IGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCTVK 134 (452)
Q Consensus 59 ~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~ 134 (452)
+..+.||.+.|++++|+|++ ++|++|+.||.|++||+. +++.+..+.+|.+.|++++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 45689999999999999998 999999999999999997 55677888999999999999987 99999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
+||+.++.. ..+..+..|...|.+++|+|+
T Consensus 81 vwd~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~sp~ 110 (753)
T 3jro_A 81 IWKEENGRW--------------------------------------------------SQIAVHAVHSASVNSVQWAPH 110 (753)
T ss_dssp EEEEETTEE--------------------------------------------------EEEEEECCCSSCEEEEEECCG
T ss_pred EEECCCCcc--------------------------------------------------cccccccCCCCCeEEEEECCC
Confidence 999865410 124455668899999999998
Q ss_pred --CCcEEEEEecCCeEEEEEccCCCCceEEE---eecccceEEEccC------------CCceEEeecCCCeEEEEeCCC
Q 012994 215 --EPNVLATTASDRSITLYDLRMSSPARKVI---MRTKSNSISWNPM------------EPMNFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 215 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~~~d~~~ 277 (452)
+ .++++|+.||.|++||++......... +...+.++.|+|. +...+++++.++.|++||.+.
T Consensus 111 ~~~-~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~ 189 (753)
T 3jro_A 111 EYG-PLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189 (753)
T ss_dssp GGC-SEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET
T ss_pred CCC-CEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC
Confidence 5 799999999999999998874433332 3456789999996 466799999999999999987
Q ss_pred cc---ccceeeeCcccceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCcee----eeeccCCcCcEEEEEEcCCCCEE
Q 012994 278 LD---EAKCVHMGHESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGGRSR----EIYHTKRMQRVFCVKFSCDASYV 347 (452)
Q Consensus 278 ~~---~~~~~~~~~~~~v~~~~~s~~---g~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l 347 (452)
.. .....+.+|...|++++|+|+ +++|++|+.||.|++||+.++... ......+...|++++|+|+|++|
T Consensus 190 ~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l 269 (753)
T 3jro_A 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL 269 (753)
T ss_dssp TTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred CcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence 64 334455689999999999999 999999999999999999986421 11223355789999999999999
Q ss_pred EEeeCCCcEEEeecccccc
Q 012994 348 ISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 348 ~s~~~dg~i~iw~~~~~~~ 366 (452)
++|+.||.|++|++.++..
T Consensus 270 ~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 270 ALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEECSSSCEECCBCCSSSC
T ss_pred EEEcCCCEEEEEecCCCCC
Confidence 9999999999999986543
No 85
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=265.04 Aligned_cols=288 Identities=15% Similarity=0.227 Sum_probs=240.9
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~ 111 (452)
++|....+........+.+|+......+..+.+|.+.|++++|+|++ ++|++++.||.|++||+.+++.+..+. |...
T Consensus 40 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~ 117 (369)
T 3zwl_B 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSNGQCVATWK-SPVP 117 (369)
T ss_dssp ECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTTCCEEEEEE-CSSC
T ss_pred EcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEee-cCCC
Confidence 55555555555556678899998899999999999999999999998 999999999999999999999988888 8899
Q ss_pred eeEEEEccCCCeEEEEeCC-----CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecC--CeeeeeecCCCCeEEEeC--
Q 012994 112 VRGLTVSTDGRILVSCGTD-----CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN--SFWAVDHQWEGDLFATAG-- 182 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 182 (452)
|.+++|+|++++|++++.+ |.|.+||+.............. ........+.. .+.++++++++.++++++
T Consensus 118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 196 (369)
T 3zwl_B 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE-EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD 196 (369)
T ss_dssp EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS-SCSEEEECCTTCCCEEEEEECGGGCEEEEEETT
T ss_pred eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc-ceeeeccCCcCccceeEEEEcCCCCEEEEEcCC
Confidence 9999999999999999999 9999999987654332221111 11222333333 889999999999999876
Q ss_pred CeEEEEeCCC-CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceE
Q 012994 183 AQVDIWNHNR-SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 183 ~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (452)
+.|.+||+.+ ...+..+..|...|.+++|+|++ .+|++++.||.|++||+++......+.....+..+.|+|++..++
T Consensus 197 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFII 275 (369)
T ss_dssp SEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEE
T ss_pred CEEEEEECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEE
Confidence 6799999998 78888888899999999999988 789999999999999999999998888888899999999998866
Q ss_pred EeecCCC-------------eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 012994 262 TAANEDC-------------NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 262 ~~~~~~~-------------~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
+.+..++ .+++||....... ..+.+|...|++++|+|+|++|++++.||.|++|++..+...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp EEECCC-------------CEEEEEETTTCCEE-EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCCcch-hheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccch
Confidence 6554443 8999998876544 455689999999999999999999999999999999875543
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.8e-34 Score=256.02 Aligned_cols=289 Identities=13% Similarity=0.204 Sum_probs=228.4
Q ss_pred CceEEEeecCCCCeeEEEEccC-CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCe
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTD-GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDL 177 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (452)
.++..+|++|.+.|++|+|+|+ +++|+||+.||+|+|||+........ ........+...+.+++|++++.+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-------~~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-------IPQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-------EEEEEECCCSSCEEEEEECTTSSE
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-------eeeEEEeCCCCCEEEEEECCCCCE
Confidence 3456679999999999999997 68999999999999999976532110 011122345678999999999999
Q ss_pred EEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--eecccceEEE
Q 012994 178 FATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI--MRTKSNSISW 253 (452)
Q Consensus 178 ~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~ 253 (452)
+++++ +.+++|+............+...+..+.+++.+ .++++++.|+.+++||+.......... ....+..+.+
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence 99887 679999999998888888888999999999988 788999999999999987554322211 2345677888
Q ss_pred ccCCC-ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc
Q 012994 254 NPMEP-MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 332 (452)
Q Consensus 254 ~~~~~-~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 332 (452)
++++. .++++++.++.+++||.+.... ...+.+|...|++++|+|++++|++|+.||.|++||+.+.+.+..+..+
T Consensus 180 ~~~~~~~~~~s~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-- 256 (340)
T 4aow_A 180 SPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-- 256 (340)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--
T ss_pred ccCCCCcEEEEEcCCCEEEEEECCCCce-eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--
Confidence 88765 4567889999999999987654 3455689999999999999999999999999999999999887776544
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
..|.+++|+|++.++ +++.|+.|++||+.++..+..+...... .....|...|.+++|+|+-..++
T Consensus 257 ~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~h~~~v~~l~~s~dg~~l~ 322 (340)
T 4aow_A 257 DIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS--------TSSKAEPPQCTSLAWSADGQTLF 322 (340)
T ss_dssp SCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC---------------CCCCCEEEEEECTTSSEEE
T ss_pred ceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee--------eeccCCCCCEEEEEECCCCCEEE
Confidence 679999999988655 5667999999999998887766543221 12237888999999999866544
No 87
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=273.88 Aligned_cols=312 Identities=11% Similarity=0.154 Sum_probs=235.2
Q ss_pred EeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
.|+|++ ..+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+.....
T Consensus 34 ~f~~~~-~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~----- 100 (437)
T 3gre_A 34 EFGPIQ-EIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE----- 100 (437)
T ss_dssp GGCCCC-CCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC-----
T ss_pred hcCCcc-ccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCc-----
Confidence 367877 6666665 488 467888888 88999999999999 99999999999999999986621100
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCC---CCCcceeccc------------CCCceEEEE--E
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHN---RSQPINSFQW------------GTDTVISVR--F 211 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~---~~~~~~~~~~------------~~~~i~~~~--~ 211 (452)
.........+...+.+++|++++.++++++ +.|++||+. +++....+.. +...+.++. +
T Consensus 101 --~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 101 --VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp --CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred --ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 012334446788999999999999999886 689999995 5544433332 344556655 4
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH 288 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 288 (452)
++++ .++++|+.||.|++||+++.+....+.. ...+.+++|+|++. .+++++.|+.|++||++...........|
T Consensus 179 ~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 256 (437)
T 3gre_A 179 NEEK-SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGD 256 (437)
T ss_dssp CSSC-EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTT
T ss_pred cCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCC
Confidence 4656 7999999999999999999998888874 56788999999854 58889999999999999865544444478
Q ss_pred ccceEEEEEc----CCCCEEEEEeCCCeEEEEECCCCceeeeeccC-------------------------CcCcEEEEE
Q 012994 289 ESAVMDIDYS----PTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-------------------------RMQRVFCVK 339 (452)
Q Consensus 289 ~~~v~~~~~s----~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~~v~~~~ 339 (452)
...|++++|+ |++.+|++|+.||.|++||+.+++....+..+ |...|++++
T Consensus 257 ~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 257 HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 8899999665 46889999999999999999998876655422 556799999
Q ss_pred EcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhh--------------------HHHHHHHHhhccCcccccccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKH--------------------AYHEAVKNRYKHLPEIKRIVR 399 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 399 (452)
|+ ++++|++|+.||.|++||+.+++.+..+..+..... ...........|...|+.+++
T Consensus 337 ~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~ 415 (437)
T 3gre_A 337 VS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIST 415 (437)
T ss_dssp EE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEE
T ss_pred EC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEee
Confidence 99 789999999999999999999998877754311000 001111222358888899888
Q ss_pred CCC
Q 012994 400 HRH 402 (452)
Q Consensus 400 ~~~ 402 (452)
.+.
T Consensus 416 ~~~ 418 (437)
T 3gre_A 416 CEV 418 (437)
T ss_dssp EES
T ss_pred ecc
Confidence 877
No 88
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5e-34 Score=280.04 Aligned_cols=266 Identities=20% Similarity=0.264 Sum_probs=214.6
Q ss_pred hHhhhhHHHhhhhhcc-----ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012994 41 YVRALTAAKLEKIFAR-----PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGL 115 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~-----~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 115 (452)
.......+++|++... .....+.+|.+.|++++|+|++ ++|++|+.||+|+|||+.+++.+..+.+|...|.++
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE
Confidence 3444556778876532 2346789999999999999998 999999999999999999999999999999999999
Q ss_pred EEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC--CeEEEeC--CeEEEEeCC
Q 012994 116 TVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAG--AQVDIWNHN 191 (452)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~i~i~d~~ 191 (452)
+|+|++++|++|+.|++|++||+............ ..+...+.+++|++++ ..+++++ +.|++||+.
T Consensus 479 ~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~ 549 (694)
T 3dm0_A 479 AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG---------EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549 (694)
T ss_dssp EECTTSSCEEEEETTSCEEEECTTSCEEEEECSST---------TSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT
T ss_pred EEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC---------CCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC
Confidence 99999999999999999999997543111000000 1234568899999987 4677665 689999999
Q ss_pred CCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEE
Q 012994 192 RSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 192 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
+++....+.+|...|.+++|+|++ .+|++|+.||.|++||+++++.+..+.....+.+++|+|++.. + +++.++.|+
T Consensus 550 ~~~~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~-l-~~~~~~~i~ 626 (694)
T 3dm0_A 550 NCKLRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW-L-CAATEHGIK 626 (694)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSE-E-EEEETTEEE
T ss_pred CCcEEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcE-E-EEEcCCCEE
Confidence 999999999999999999999988 7999999999999999999887777767777889999998654 3 334466799
Q ss_pred EEeCCCccccceeee------------------CcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 272 SYDSRKLDEAKCVHM------------------GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~------------------~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+||+++......... .+...+++++|+|+|++|++|+.||.|++||+.
T Consensus 627 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 627 IWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999987544322211 111247899999999999999999999999985
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2e-33 Score=257.71 Aligned_cols=288 Identities=13% Similarity=0.180 Sum_probs=228.0
Q ss_pred EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC----C--
Q 012994 102 VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE----G-- 175 (452)
Q Consensus 102 ~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-- 175 (452)
...+.+|.+.|++++|+| ++|++|+.||.|++||+..+..... .........+...+.+++|+++ +
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFE 80 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCCcc
Confidence 455679999999999998 7999999999999999987642111 0123344566788999999999 8
Q ss_pred -CeEEEeC--CeEEEEeCCCCCc-----ceecccC-----CCceEEEEEC----CCCCcE-EEEEecCCeEEEEEccC--
Q 012994 176 -DLFATAG--AQVDIWNHNRSQP-----INSFQWG-----TDTVISVRFN----PAEPNV-LATTASDRSITLYDLRM-- 235 (452)
Q Consensus 176 -~~~~~~~--~~i~i~d~~~~~~-----~~~~~~~-----~~~i~~~~~~----~~~~~~-l~~~~~dg~i~i~d~~~-- 235 (452)
.++++++ +.|.+||+.+++. ...+..| ...|.+++|+ |++ .+ |++++.||.|++||++.
T Consensus 81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSS
T ss_pred ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEeCCccc
Confidence 8888876 6899999999887 8888888 5899999999 888 67 99999999999999998
Q ss_pred ----CCCce-----EEEe--------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC---c---ccce
Q 012994 236 ----SSPAR-----KVIM--------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG---H---ESAV 292 (452)
Q Consensus 236 ----~~~~~-----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~---~~~v 292 (452)
...+. .+.. ...+.+++|+|++ .+++++.++.+++||++..... ..+.. | ...|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPL-YNFESQHSMINNSNSI 236 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEE-EEEECCC---CCCCCE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCcee-EEEeccccccccCCcc
Confidence 66665 5543 5678899999998 8999999999999999875443 34446 8 8999
Q ss_pred EEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeccC------------CcCcEEEEEEcCCCCEEEEeeCCCcEE
Q 012994 293 MDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTK------------RMQRVFCVKFSCDASYVISGSDDTNLR 357 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~~dg~i~ 357 (452)
.+++|+|++++|++++.| |.|++||+.+++....+... |...|.+++|+|++++|++++.||.|+
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 999999999999999999 99999999999887777551 558899999999999999999999999
Q ss_pred EeecccccccccCC------hhhhhhhHHHHHHHHhhccCccccccccCCCC
Q 012994 358 LWKAKASEQLGVLH------PREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 403 (452)
Q Consensus 358 iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
+||+.+++.+..+. .+......- .......|...+..++|+|..
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAV--DEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCB--CTTSCBCSSCCEEEEEEECTT
T ss_pred EEEcCCCceeEEEecccCcccchhhhhcc--ccccccccCCceeEEEecccc
Confidence 99999999887775 211000000 000000127788999999885
No 90
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.2e-34 Score=258.87 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=221.9
Q ss_pred EEeCCCCceEEEeecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee
Q 012994 93 LWDIANRRTVCQYSGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH 171 (452)
Q Consensus 93 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (452)
+|++...+....+.+|...|++++|+|++ ++|++|+.||.|++||+.++...... ....+...+.+++|
T Consensus 57 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI----------QGMGPGDAITGMKF 126 (383)
T ss_dssp HHHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE----------CCCSTTCBEEEEEE
T ss_pred cccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee----------ecCCcCCceeEEEe
Confidence 34445566777889999999999999998 89999999999999999866322111 01135678999999
Q ss_pred cC-CCCeEEEeC--CeEEEEeCCCCCcceecccC---CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-e
Q 012994 172 QW-EGDLFATAG--AQVDIWNHNRSQPINSFQWG---TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-M 244 (452)
Q Consensus 172 ~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~ 244 (452)
+| ++.++++++ +.|++||+.. ..+..+..+ ...|.+++|+|++ .+|++|+.||.|++||++ +.....+. +
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~-~~~~~~~~~h 203 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLD-GHEIFKEKLH 203 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETT-SCEEEEEECS
T ss_pred CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECC-CCEEEEeccC
Confidence 99 678888775 6799999986 445555443 4789999999988 799999999999999994 44555554 4
Q ss_pred ecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc--ceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 012994 245 RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--KCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
...+.+++|+|++..++++++.|+.+++||++..... .....+|...|++++|+| +|++|++++.||.|++||+.++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 5678899999999988999999999999999874321 222237899999999999 9999999999999999999987
Q ss_pred ceeeeeccCC----------------cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHH
Q 012994 322 RSREIYHTKR----------------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVK 385 (452)
Q Consensus 322 ~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (452)
.....+..+. ...+..++|+|++++ +|+.||.|++||+.+++.+..+..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~------------ 349 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP------------ 349 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT------------
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC------------
Confidence 7655443211 134556777888777 7889999999999999988777532
Q ss_pred HhhccCccccccccCCCCChhh
Q 012994 386 NRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
.+...+..++|+|+.+.++
T Consensus 350 ---~~~~~~~~~~~s~~g~~l~ 368 (383)
T 3ei3_B 350 ---NAAGIISLNKFSPTGDVLA 368 (383)
T ss_dssp ---TBCSCCCEEEECTTSSEEE
T ss_pred ---CCCceEEEEEEecCccEEE
Confidence 2455666678888776443
No 91
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=256.80 Aligned_cols=267 Identities=15% Similarity=0.225 Sum_probs=215.8
Q ss_pred hhHHHhhhhhcccccccc-ccccccEEEEEeCCC---CcceEEEeeCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEE--
Q 012994 45 LTAAKLEKIFARPFIGAL-DGHRDGISCMAKNPN---YLKGFFSGSMDGDIRLWDIANRR-TVCQYSGHQGAVRGLTV-- 117 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~---~~~~l~tg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~-- 117 (452)
...+.+|+.......... .+|.+.|++++|+|+ + .+|++|+.||.|++||+.+++ .+..+.+|...|.++.|
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 121 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQ-RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIG 121 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTT-CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEES
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCC-ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeecc
Confidence 456788888776655443 489999999999998 5 899999999999999999888 88889999999999954
Q ss_pred ----ccCCCeEEEEeCCCcEEEEeCCCCC-CCCCCCCCCCCCCCeeEEEecCCeeeee----ecCCCCeEEEeC--CeEE
Q 012994 118 ----STDGRILVSCGTDCTVKLWNVPVAT-LTDSDDSTDNSSEPLAVYVWKNSFWAVD----HQWEGDLFATAG--AQVD 186 (452)
Q Consensus 118 ----~~~~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~i~ 186 (452)
+|++++|++++.||.|++||+..+. ........... ....+.++. +++++.++++++ +.|.
T Consensus 122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE--------NKRDCWTVAFGNAYNQEERVVCAGYDNGDIK 193 (357)
T ss_dssp GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS--------CCCCEEEEEEECCCC-CCCEEEEEETTSEEE
T ss_pred ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC--------CCCceEEEEEEeccCCCCCEEEEEccCCeEE
Confidence 6889999999999999999998774 22211111100 022556666 789999999886 6899
Q ss_pred EEeCCCCCcceecccCCCceEEEEECC---CCCcEEEEEecCCeEEEEEccCCCCceEEE------eecccceEEEccCC
Q 012994 187 IWNHNRSQPINSFQWGTDTVISVRFNP---AEPNVLATTASDRSITLYDLRMSSPARKVI------MRTKSNSISWNPME 257 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~ 257 (452)
+||+.+++.... ..|...|.+++|+| ++ .++++++.||.|++||+++......+. +...+.++.|+|++
T Consensus 194 i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 194 LFDLRNMALRWE-TNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp EEETTTTEEEEE-EECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE
T ss_pred EEECccCceeee-cCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC
Confidence 999999887444 55788999999999 66 789999999999999999887766554 45677899999999
Q ss_pred CceEEeecCCCeEEEEeCCCccc------------------cceeeeCcccceEEEEEcCCCCEEE-EEeCCCeEEEEEC
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDE------------------AKCVHMGHESAVMDIDYSPTGREFV-TGSYDRTIRIFQY 318 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~------------------~~~~~~~~~~~v~~~~~s~~g~~l~-s~~~dg~i~iwd~ 318 (452)
..++++++.++.+++||++.... ....+.+|...|++++|+|+|++|+ +++.||.|++||+
T Consensus 272 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 272 RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 88899999999999999876432 3445668999999999999999998 8999999999999
Q ss_pred CCCc
Q 012994 319 NGGR 322 (452)
Q Consensus 319 ~~~~ 322 (452)
.+..
T Consensus 352 ~~~~ 355 (357)
T 3i2n_A 352 TKLN 355 (357)
T ss_dssp CC--
T ss_pred CCcc
Confidence 8754
No 92
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.9e-32 Score=250.60 Aligned_cols=274 Identities=12% Similarity=0.150 Sum_probs=230.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE-EEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++ ...
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~-------------~~~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNN-------------VIA 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE-------------EEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCe-------------EEE
Confidence 578899999999999999999998888665 58999999999977 677789999999997763 344
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 235 (452)
.......+.+++++|++..++.++ +.|.+||+.+++.+..+..+ ..+.+++|+|++..++++++.|+.|++||+.+
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 445556889999999999775443 67999999999888777754 56899999999855658888899999999999
Q ss_pred CCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe---CCCe
Q 012994 236 SSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRT 312 (452)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~dg~ 312 (452)
++....+.....+..++|+|++..+++++..++.+++||+++....... .+...+.+++|+|+|++|++++ .++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNT 225 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCE
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCc
Confidence 9888888777788999999999998899999999999999876543332 3556789999999999999888 6899
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEE-EEeeCCCcEEEeecccccccccCCh
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYV-ISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
|++||+.+++....+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+..
T Consensus 226 v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~ 284 (391)
T 1l0q_A 226 VSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV 284 (391)
T ss_dssp EEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence 999999999887776554 458999999999987 5778899999999999988776643
No 93
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.4e-32 Score=255.12 Aligned_cols=286 Identities=12% Similarity=0.109 Sum_probs=234.4
Q ss_pred cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE-----EeecCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 58 FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-----QYSGHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 58 ~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
.+..+..+ ..+.+++|+|++ .++++++.|+.|++||+.+++... .+.+|.+.|.+++|++++.++++++.|+.
T Consensus 115 ~~~~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 115 FISRFKTG-FQPKSVRFIDNT-RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEECS-SCBCCCEESSSS-EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred EEEEEcCC-CCceEEEEeCCC-eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 34445444 346699999965 888899999999999999998876 34578899999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
|++||+.+++.. .....+...+.++++++++..+++.+ +.|.+||+.+++.+..+.. ...+.++
T Consensus 193 v~~~d~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~ 259 (433)
T 3bws_A 193 VHVFDLKTLAYK------------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL 259 (433)
T ss_dssp EEEEETTTCCEE------------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred EEEEECCCceEE------------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence 999999765321 22223456788999999998775433 6899999999988877776 4569999
Q ss_pred EECCCCCcEEEEEe--------cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 210 RFNPAEPNVLATTA--------SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 210 ~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
+|+|++ ..+++++ .||.|++||+++++....+.....+..++|+|++..++++++.++.+.+||..+....
T Consensus 260 ~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 260 LLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence 999998 5666666 5889999999988877777777788899999999999999999999999999865544
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCE
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSY---------------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 346 (452)
... .+...+.+++|+|+|++|++++. ||.|++||+.+++....+... ..+.+++|+|+|++
T Consensus 339 ~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~ 414 (433)
T 3bws_A 339 KSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPTGLDVSPDNRY 414 (433)
T ss_dssp EEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEEEEEECTTSCE
T ss_pred EEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCceEEEcCCCCE
Confidence 332 36678999999999999888876 579999999999887776553 57999999999999
Q ss_pred EEEeeC-CCcEEEeeccc
Q 012994 347 VISGSD-DTNLRLWKAKA 363 (452)
Q Consensus 347 l~s~~~-dg~i~iw~~~~ 363 (452)
|++++. |+.|++|++..
T Consensus 415 l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 415 LVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEETTTTEEEEEEETT
T ss_pred EEEEECCCCeEEEEEecC
Confidence 988775 99999999863
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-34 Score=261.65 Aligned_cols=278 Identities=11% Similarity=0.084 Sum_probs=224.7
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE--eec
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ--YSG 107 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~--~~~ 107 (452)
++|....+........+.+|+..... .+..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.+++.... +..
T Consensus 16 ~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 94 (372)
T 1k8k_C 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILR 94 (372)
T ss_dssp ECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTEEEEEEECCC
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCeeeeeEEeec
Confidence 44555555444455667888887766 788899999999999999998 9999999999999999988875444 467
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE--EEecCCeeeeeecCCCCeEEEeC--C
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV--YVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
|...|.+++|+|++++|++++.||.|++||+..+... ..... ..+...+.+++|++++.++++++ +
T Consensus 95 ~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 164 (372)
T 1k8k_C 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW----------WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 164 (372)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE----------EEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc----------eeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999766310 00111 12356789999999999999886 6
Q ss_pred eEEEEeC------------------CCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee
Q 012994 184 QVDIWNH------------------NRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (452)
Q Consensus 184 ~i~i~d~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (452)
.+++||+ ..++.+..+..|...|.+++|+|++ .+|++++.||.|++||+++.+.+..+...
T Consensus 165 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 165 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence 7999995 4677788888899999999999988 79999999999999999999888777654
Q ss_pred -cccceEEEccCCCceEEeecCCCeEEEEeCCC--cc----------------------c---------c-------cee
Q 012994 246 -TKSNSISWNPMEPMNFTAANEDCNCYSYDSRK--LD----------------------E---------A-------KCV 284 (452)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~----------------------~---------~-------~~~ 284 (452)
..+.+++|+|++. +++++ .++.+++|+... .. . . ...
T Consensus 244 ~~~v~~~~~~~~~~-~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 244 TLPLLAVTFITESS-LVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp SCCEEEEEEEETTE-EEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred CCCeEEEEEecCCC-EEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 3678999999876 34455 899999999877 21 0 0 222
Q ss_pred eeCcccceEEEEEc-CCC---CEEEEEeCCCeEEEEECCCCce
Q 012994 285 HMGHESAVMDIDYS-PTG---REFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 285 ~~~~~~~v~~~~~s-~~g---~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
..+|...|++++|+ ++| .+|++|+.||.|++||+.+++.
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 34899999999966 677 9999999999999999976543
No 95
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-33 Score=252.00 Aligned_cols=269 Identities=10% Similarity=0.138 Sum_probs=222.0
Q ss_pred eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeC-
Q 012994 105 YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG- 182 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 182 (452)
..+|.+.|++++|+|++++|++++.||.|++||+..+... ........+...+.+++|++++. ++++++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 77 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---------EEEEEEEECSSCEEEEEEEESSSEEEEEEET
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc---------ccceeeeecCCceEEEEECCCCCcEEEEEcC
Confidence 4579999999999999999999999999999999765310 11344557788999999999999 888876
Q ss_pred -CeEEEEeC-CCCCcceeccc--CCCceEEEEECCCCCcEEEEEecCCeEEEEEccC---------CCCceEEEeecccc
Q 012994 183 -AQVDIWNH-NRSQPINSFQW--GTDTVISVRFNPAEPNVLATTASDRSITLYDLRM---------SSPARKVIMRTKSN 249 (452)
Q Consensus 183 -~~i~i~d~-~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~ 249 (452)
+.|.+||+ .+++. ..+.. |...|.+++|+| + .++++++.||.|++||+++ .+....+.....+.
T Consensus 78 dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 154 (342)
T 1yfq_A 78 QGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIF 154 (342)
T ss_dssp TSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEE
T ss_pred CCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceE
Confidence 67999999 77654 67777 999999999999 5 7999999999999999988 76666666777888
Q ss_pred eEEEccCCCceEEeecCCCeEEEEeCCC-ccc-cceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-----
Q 012994 250 SISWNPMEPMNFTAANEDCNCYSYDSRK-LDE-AKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGG----- 321 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~----- 321 (452)
+++|+|++ +++++.++.+++||++. ... .......|...+.+++|+| ++++|++++.||.|++|++...
T Consensus 155 ~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 155 TMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp EEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred EEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 99999877 88899999999999987 543 3334457888999999999 9999999999999999999876
Q ss_pred -ceeeeeccCC--------cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhcc-C
Q 012994 322 -RSREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKH-L 391 (452)
Q Consensus 322 -~~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 391 (452)
.....+..+. ...|++++|+|++++|++++.||.|++||+.+++.+..+. .| .
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----------------~~h~ 294 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-----------------KFNE 294 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-----------------CCSS
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh-----------------cccC
Confidence 5554544332 2489999999999999999999999999999999887764 34 5
Q ss_pred ccccccccCCCCChhh
Q 012994 392 PEIKRIVRHRHLPKPI 407 (452)
Q Consensus 392 ~~~~~~~~~~~~p~~~ 407 (452)
..+..++ |+...++
T Consensus 295 ~~v~~~~--~~~~~l~ 308 (342)
T 1yfq_A 295 DSVVKIA--CSDNILC 308 (342)
T ss_dssp SEEEEEE--ECSSEEE
T ss_pred CCceEec--CCCCeEE
Confidence 6677777 5544433
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-33 Score=255.37 Aligned_cols=262 Identities=15% Similarity=0.194 Sum_probs=213.3
Q ss_pred hhHHHhhhhhcccccccccc-----ccccEEEEEeCCC----CcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012994 45 LTAAKLEKIFARPFIGALDG-----HRDGISCMAKNPN----YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGL 115 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~l~~-----h~~~V~~~~~~~~----~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 115 (452)
...+.+|+......+..+.. |.+.|++++|+|+ + .+|++|+.||.|++||+.+++.+..+.+|...|.++
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~ 121 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH-PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL 121 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC-EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC-CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE
Confidence 34577888877776666654 5578999999999 5 699999999999999999999999999999999999
Q ss_pred EEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCC
Q 012994 116 TVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR 192 (452)
Q Consensus 116 ~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~ 192 (452)
+|+| ++.+|++++.||.|++||+.++......... ..+...+.+++|++++.++++++ +.+++||+.+
T Consensus 122 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 122 KFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV---------EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST---------TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred EECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc---------ccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 9999 9999999999999999999876332211000 13567899999999999999886 6799999998
Q ss_pred CCcceeccc----------------------------CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC------
Q 012994 193 SQPINSFQW----------------------------GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP------ 238 (452)
Q Consensus 193 ~~~~~~~~~----------------------------~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------ 238 (452)
++....+.. |...|.+++|+ + +++++++.||.|++||+++...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 269 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIK 269 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccc
Confidence 776655443 88999999998 3 6899999999999999987654
Q ss_pred --------ceEEE-eecccceEEEccCC-CceEEeecCCCeEEEEeCCCcccc---ceeeeCc--ccceEEEEEcCCCCE
Q 012994 239 --------ARKVI-MRTKSNSISWNPME-PMNFTAANEDCNCYSYDSRKLDEA---KCVHMGH--ESAVMDIDYSPTGRE 303 (452)
Q Consensus 239 --------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~--~~~v~~~~~s~~g~~ 303 (452)
...+. ....+.+++|+|+. ..++++++.++.|++||+...... ...+.+| ...|++++|+|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 349 (366)
T 3k26_A 270 PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSI 349 (366)
T ss_dssp TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSE
T ss_pred cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCe
Confidence 22222 23457788999983 456888999999999999876533 2344566 789999999999999
Q ss_pred EEEEeCCCeEEEEECC
Q 012994 304 FVTGSYDRTIRIFQYN 319 (452)
Q Consensus 304 l~s~~~dg~i~iwd~~ 319 (452)
|++++.||.|++||+.
T Consensus 350 l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 350 LIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEETTSEEEEEEC-
T ss_pred EEEEeCCCEEEEEEec
Confidence 9999999999999985
No 97
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-34 Score=262.83 Aligned_cols=261 Identities=9% Similarity=0.089 Sum_probs=208.4
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
+.-...|.+++|+||| +++||++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.....
T Consensus 12 ~~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~ 78 (588)
T 2j04_A 12 KEFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG 78 (588)
T ss_dssp CCCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC
T ss_pred hHhhccEEEEEECCCC-CEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce
Confidence 4456899999999999 9999999999999 755554 447999999999999998 56666666543221
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCC-----ceEEEEECCCC
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTD-----TVISVRFNPAE 215 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~ 215 (452)
.. .. .+...+.+++|+|+|..+++++ |.+.+||... .+..+. |.. .+.+++|+|++
T Consensus 79 ~~---~~-----------~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG 141 (588)
T 2j04_A 79 LL---NS-----------QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIE 141 (588)
T ss_dssp SS---TT-----------SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSS
T ss_pred Ee---ec-----------CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCC
Confidence 11 10 1146789999999999999887 6799999544 555555 554 59999999998
Q ss_pred CcEEEEEecCCeEEEEEccCCCC-------ceEEEee-----cccceEEEccCCCceEEeecCCCeEEEEeCCCcccc--
Q 012994 216 PNVLATTASDRSITLYDLRMSSP-------ARKVIMR-----TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA-- 281 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-- 281 (452)
++|++|+.||+|++||+..+.. +..+... ..+.+++|+|++ +++++.|+.+++||.......
T Consensus 142 -~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~ 217 (588)
T 2j04_A 142 -SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPV 217 (588)
T ss_dssp -SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCC
T ss_pred -CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccc
Confidence 7999999999999999988753 3343322 368899999998 778888999999999876532
Q ss_pred ceee-eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE--cCCCCEEEEeeCCCcEEE
Q 012994 282 KCVH-MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF--SCDASYVISGSDDTNLRL 358 (452)
Q Consensus 282 ~~~~-~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~i 358 (452)
...+ .+|...|.+++|+ |+.||+++ ++.|++||+.++....... +|...|..++| +||+..|++++.||. ++
T Consensus 218 ~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-kl 292 (588)
T 2j04_A 218 SRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KV 292 (588)
T ss_dssp EEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EE
T ss_pred eeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EE
Confidence 2233 4788999999999 68999887 6999999999877644333 57789999999 999999999999999 99
Q ss_pred eecc
Q 012994 359 WKAK 362 (452)
Q Consensus 359 w~~~ 362 (452)
|...
T Consensus 293 w~~d 296 (588)
T 2j04_A 293 LLED 296 (588)
T ss_dssp EESS
T ss_pred Eeec
Confidence 9975
No 98
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-32 Score=253.27 Aligned_cols=281 Identities=12% Similarity=0.064 Sum_probs=218.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---eEEEeec-----------------------------------
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVCQYSG----------------------------------- 107 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~~~~~----------------------------------- 107 (452)
..++.+++|+|+| ++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg-~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDG-SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSS-SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCC-CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 3578999999999 766555 57899999999998 6655543
Q ss_pred -------------------CCCCeeEEEEccCCCeE-EEEeCCCcEEEEeCC--CCCCCCCCCCCCCCCCCeeEEEecCC
Q 012994 108 -------------------HQGAVRGLTVSTDGRIL-VSCGTDCTVKLWNVP--VATLTDSDDSTDNSSEPLAVYVWKNS 165 (452)
Q Consensus 108 -------------------h~~~v~~l~~~~~~~~l-~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (452)
|.+.|.+++|+|++++| ++++.||.|++||+. ++... ..+....+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~----------~~~~~~~~~~~ 151 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL----------KLRKRFCFSKR 151 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE----------EEEEEEECSSC
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee----------eeeecccCCCC
Confidence 33379999999999996 899999999999997 44221 11111245678
Q ss_pred eeeeeecCCCCeEEEeC--CeEEEEeCCCCCcce----ecccCCCceEEEEECCC---CCcEEEEEecCCeEEEEEccCC
Q 012994 166 FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN----SFQWGTDTVISVRFNPA---EPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~----~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
+.+++|+|++.++++++ +.+.+|++.++.... .+..|...|.+++|+|+ + .+|++|+.|+.|++||++++
T Consensus 152 v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCC
Confidence 99999999999999886 679999998877554 77889999999999998 6 79999999999999999988
Q ss_pred CCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee------------------------Cccc
Q 012994 237 SPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM------------------------GHES 290 (452)
Q Consensus 237 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------~~~~ 290 (452)
..+..+. +...+.+++|+ ....+++++.|+.|++||+.+......... ....
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred ceeeeeecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 8776643 45677899999 455688889999999999987654433321 2235
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCC---ceeeeeccCCcCcEEEEEEcCCCCEEEEeeC------CCcEEE
Q 012994 291 AVMDIDYSPTGREFVTGS-YDRTIRIFQY--NGG---RSREIYHTKRMQRVFCVKFSCDASYVISGSD------DTNLRL 358 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~i 358 (452)
.|.+++|+|++++|++++ .|+.|++|++ ..+ .....+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 689999999999999998 8999999999 554 444444433 78999999996544444443 456889
Q ss_pred eeccc
Q 012994 359 WKAKA 363 (452)
Q Consensus 359 w~~~~ 363 (452)
|.+..
T Consensus 387 ~~~~~ 391 (450)
T 2vdu_B 387 IEYNL 391 (450)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88754
No 99
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.1e-34 Score=265.77 Aligned_cols=279 Identities=20% Similarity=0.184 Sum_probs=207.3
Q ss_pred CCCchhh-hhhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee-
Q 012994 31 NLRPQEK-AVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS- 106 (452)
Q Consensus 31 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~- 106 (452)
.++|... .++.......+++|++.... ....+.+|.+.|++|+|+|.+..+|++|+.||+|++||+.++.......
T Consensus 126 ~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 126 AWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASS 205 (435)
T ss_dssp EECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECC
T ss_pred EEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEecc
Confidence 3566433 34445556678899986544 4456789999999999998533899999999999999998765433333
Q ss_pred -cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeC--
Q 012994 107 -GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG-- 182 (452)
Q Consensus 107 -~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 182 (452)
.+...+.+++|+|++.+|++|+.||.|++||+..... .....+...+.+++|+|++. ++++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-------------~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-------------WNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC-------------CCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee-------------EEEecccceEEeeeecCCCceEEEEecCc
Confidence 2345678999999999999999999999999864321 11223567789999999886 565654
Q ss_pred CeEEEEeCCCCCcceec---ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec-------ccceEE
Q 012994 183 AQVDIWNHNRSQPINSF---QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT-------KSNSIS 252 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------~~~~~~ 252 (452)
+.|++||+.+.+....+ ..|...|.+++|+|++ .+|++++.||.|++||+.++.....+.... ......
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 67999999887654433 5688999999999988 789999999999999999887665553221 122345
Q ss_pred EccCCCceEE-----------eecCCCeEEEEeCCCccccceeeeCcccceEEE-EEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 253 WNPMEPMNFT-----------AANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI-DYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 253 ~~~~~~~~~~-----------~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
|+|.+..+++ .+..++.|++||..+.........+|...|.++ +|+|+|++|++|+ |+.|+|||+++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 5555544433 334556899999988777666667888899887 6999999999886 88999999998
Q ss_pred Ccee
Q 012994 321 GRSR 324 (452)
Q Consensus 321 ~~~~ 324 (452)
++..
T Consensus 431 gk~r 434 (435)
T 4e54_B 431 ARTR 434 (435)
T ss_dssp ----
T ss_pred Ceee
Confidence 8653
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.1e-32 Score=240.47 Aligned_cols=264 Identities=19% Similarity=0.272 Sum_probs=223.3
Q ss_pred hhhhHHHhhhhhcccccccc--ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC
Q 012994 43 RALTAAKLEKIFARPFIGAL--DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD 120 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~ 120 (452)
.....+++|+..++.++..+ .+|...|++++|+|++ ++|++|+.||+|++||+.+++.+..+.+|...+.++.+ +
T Consensus 42 g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~ 118 (318)
T 4ggc_A 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--N 118 (318)
T ss_dssp EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--E
T ss_pred EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--C
Confidence 34667899999988887766 5788899999999999 99999999999999999999999999999998887665 4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCc---
Q 012994 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQP--- 195 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~--- 195 (452)
+..|++++.++.+++|+...... .......+...+..+.+.+++.++++++ +.+++||+.+++.
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 187 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEH-----------HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSC-----------EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSC
T ss_pred CCEEEEEecCCceEeeecCCCce-----------eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccccc
Confidence 67999999999999999876521 2233445677888999999999999886 6799999988764
Q ss_pred -ceecccCCCceEEEEECCCCCcEEE--EEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEe-ecCCCeEE
Q 012994 196 -INSFQWGTDTVISVRFNPAEPNVLA--TTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTA-ANEDCNCY 271 (452)
Q Consensus 196 -~~~~~~~~~~i~~~~~~~~~~~~l~--~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 271 (452)
......+.+.|.++.++|.+..++. +++.++.|++||.+.............+..+.+.|.+..++++ ++.++.|+
T Consensus 188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~ 267 (318)
T 4ggc_A 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 267 (318)
T ss_dssp CSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred ceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEE
Confidence 3444557789999999998877654 5667899999999999888888888888999999999887765 45799999
Q ss_pred EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 272 SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 272 ~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
+||.++.... ..+.+|.+.|++++|+|+|++|++|+.||+|+|||+.+.
T Consensus 268 iwd~~~~~~~-~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 268 IWKYPTMAKV-AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEETTTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEECCCCcEE-EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999876544 456799999999999999999999999999999999764
No 101
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-33 Score=258.72 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=216.3
Q ss_pred hhHHHhhhhhcc----ccccccccccccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCC-------ceEEEeecCCCCe
Q 012994 45 LTAAKLEKIFAR----PFIGALDGHRDGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANR-------RTVCQYSGHQGAV 112 (452)
Q Consensus 45 ~~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~-------~~~~~~~~h~~~v 112 (452)
...+.+|+.... ..+..+.+|.+.|++++|+| ++ .+|++|+.||.|++||+.++ +.+..+.+|...|
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v 134 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV 134 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeE
Confidence 345667776432 34567889999999999999 76 99999999999999999987 5678889999999
Q ss_pred eEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEe
Q 012994 113 RGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWN 189 (452)
Q Consensus 113 ~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d 189 (452)
.+++|+|++ .+|++++.||.|++||+.++.....+.. ..+...+.+++|++++.++++++ +.|++||
T Consensus 135 ~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 135 GIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP----------DVHPDTIYSVDWSRDGALICTSCRDKRVRVIE 204 (402)
T ss_dssp EEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT----------TTCCSCEEEEEECTTSSCEEEEETTSEEEEEE
T ss_pred EEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec----------CCCCCceEEEEECCCCCEEEEEecCCcEEEEe
Confidence 999999998 6999999999999999987633211100 13567889999999999999886 6799999
Q ss_pred CCCCCcceec-ccCCCc-eEEEEECCCCCcEEEEE---ecCCeEEEEEccCCCC-ceEEE--eecccceEEEccCCCceE
Q 012994 190 HNRSQPINSF-QWGTDT-VISVRFNPAEPNVLATT---ASDRSITLYDLRMSSP-ARKVI--MRTKSNSISWNPMEPMNF 261 (452)
Q Consensus 190 ~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~ 261 (452)
+++++.+..+ ..|.+. +.++.|+|++ .++++| +.|+.|++||+++... ..... ....+..+.|+|++..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 283 (402)
T 2aq5_A 205 PRKGTVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY 283 (402)
T ss_dssp TTTTEEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE
T ss_pred CCCCceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE
Confidence 9999998888 677765 8999999987 788888 7899999999998765 33333 345678999999999988
Q ss_pred EeecCCCeEEEEeCCCccccceeeeC--cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 262 TAANEDCNCYSYDSRKLDEAKCVHMG--HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 262 ~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
++++.|+.|++||+.........+.. |...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 284 ~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 284 LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 89999999999999887643333333 5589999999999998875 467999999987654
No 102
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-32 Score=240.99 Aligned_cols=265 Identities=18% Similarity=0.242 Sum_probs=218.5
Q ss_pred CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
.+....+.+|.+.|++++| +++++|++++.||.|++||+.++. .......+...+.+++|++++.++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW------------LGTVVYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE------------EEEEEEECSSCEEEEEEETTTTEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE------------EEEEeecCCccEEEEEECCCCCEE
Confidence 3677889999999999999 999999999999999999996652 334455667899999999999999
Q ss_pred EEeC--CeEEEEeCCCC---CcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEE
Q 012994 179 ATAG--AQVDIWNHNRS---QPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSIS 252 (452)
Q Consensus 179 ~~~~--~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~ 252 (452)
++++ +.+.+|++... +.+..+..|...|.++.|. + .++++++.||.|++|| .......+. ....+..+.
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEE
Confidence 9886 57999998764 5677788899999999994 3 6899999999999999 444444444 345677899
Q ss_pred EccCCCceEEeecCCCeEEEEeCCCccccceeeeC-cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC
Q 012994 253 WNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR 331 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 331 (452)
+.|.....+++++.++.+++||... ....... |...+.+++|+|++. +++++.||.|++||+.+++....+.. |
T Consensus 150 ~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~-~ 224 (313)
T 3odt_A 150 VVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG-H 224 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC-C
T ss_pred EccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc-C
Confidence 9997777899999999999999432 3333334 889999999999998 99999999999999999988877754 4
Q ss_pred cCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCC
Q 012994 332 MQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLP 404 (452)
Q Consensus 332 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 404 (452)
...|++++|+|++ .|++++.||.|++||+.+++.+..+. .|...+..++++|+..
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~-----------------~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT-----------------LPAISIWSVDCMSNGD 279 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEE-----------------CSSSCEEEEEECTTSC
T ss_pred CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEe-----------------ccCceEEEEEEccCCC
Confidence 4889999999999 58899999999999999998776653 4556788888888765
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=252.54 Aligned_cols=313 Identities=14% Similarity=0.107 Sum_probs=215.8
Q ss_pred CCc-hhhhhhhHhhhhHHHhhhhhccccccccc-------------cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC
Q 012994 32 LRP-QEKAVEYVRALTAAKLEKIFARPFIGALD-------------GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA 97 (452)
Q Consensus 32 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~ 97 (452)
++| ....+........+++|++........+. +|.+.|++++|+|++..+|++++.||.|++||+.
T Consensus 51 ~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 51 IEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp ECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT
T ss_pred EecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC
Confidence 555 44545445556667888887666655553 6999999999999444899999999999999999
Q ss_pred CCceEEEeecCCCCeeEEEEccC---CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC
Q 012994 98 NRRTVCQYSGHQGAVRGLTVSTD---GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE 174 (452)
Q Consensus 98 ~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (452)
+++....+. +...+.++.|++. +.++++++.||.|++||+.++.. ......+...+.+++++|+
T Consensus 131 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~------------~~~~~~~~~~v~~~~~~~~ 197 (408)
T 4a11_B 131 TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC------------SHILQGHRQEILAVSWSPR 197 (408)
T ss_dssp TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC------------CEEECCCCSCEEEEEECSS
T ss_pred CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce------------eeeecCCCCcEEEEEECCC
Confidence 998888776 7889999999984 45999999999999999987643 2233345678999999999
Q ss_pred CC-eEEEeC--CeEEEEeCCCCC-cceec---------------ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC
Q 012994 175 GD-LFATAG--AQVDIWNHNRSQ-PINSF---------------QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (452)
Q Consensus 175 ~~-~~~~~~--~~i~i~d~~~~~-~~~~~---------------~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 235 (452)
+. ++++++ +.+++||+.++. .+..+ ..|...|.+++|+|++ .+|++++.||.|++||+++
T Consensus 198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT
T ss_pred CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCC
Confidence 98 466665 679999998765 33332 5678899999999987 7899999999999999998
Q ss_pred CCCceEEEe-----ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC
Q 012994 236 SSPARKVIM-----RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 310 (452)
Q Consensus 236 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 310 (452)
+........ ................+++++.++.+++||..+.... ..+.+|...|++++|+|++++|++|+.|
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-TMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred CccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce-eeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 775543321 1122234444455556777788999999999876544 4556899999999999999999999999
Q ss_pred CeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEeeCCCcEEEeeccc
Q 012994 311 RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 311 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~ 363 (452)
|.|++||+.+++.+....... ....+.+ +...+.+.+.|+.+++|+...
T Consensus 356 g~i~iw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 356 CNILAWVPSLYEPVPDDDETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp SCEEEEEECC--------------------------------------------
T ss_pred CeEEEEeCCCCCccCCCCceE----eccccccccceeecccCccCceeecCCcc
Confidence 999999999987765443221 1123333 334455677899999998753
No 104
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-33 Score=247.92 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=196.5
Q ss_pred EEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC
Q 012994 72 MAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD 151 (452)
Q Consensus 72 ~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 151 (452)
..+.+++ .+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 42 ~~~~~d~-~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------- 104 (343)
T 3lrv_A 42 KSMYYDK-WVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------- 104 (343)
T ss_dssp SSSSEEE-EEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------
T ss_pred hhhcCCC-CEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------
Confidence 3445666 899999999999999999999888876 467889999988 99999999999999742
Q ss_pred CCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc-cCCCceEEEEECC--CCCcEEEEEecCCeE
Q 012994 152 NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-WGTDTVISVRFNP--AEPNVLATTASDRSI 228 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~--~~~~~l~~~~~dg~i 228 (452)
.+.+|+..+++.+..+. .|.+.|.+++|+| ++ .++++++.||.|
T Consensus 105 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i 151 (343)
T 3lrv_A 105 --------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTI 151 (343)
T ss_dssp --------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCE
T ss_pred --------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcE
Confidence 35678888887665554 5678899999999 77 789999999999
Q ss_pred EEEEccCCCCceEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-cccceEEEEEcCCCCEEE
Q 012994 229 TLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG-HESAVMDIDYSPTGREFV 305 (452)
Q Consensus 229 ~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~ 305 (452)
++||+++++....... ...+.+++|+|++. ++++|+.|+.|++||+++.......+.. |..+|++++|+|+|.+|+
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 9999998887554422 33578999999875 5888999999999999988776445555 999999999999999999
Q ss_pred EEeCCCeEEEEECCCCceeeeecc--CCcCcE--EEEEEcCCCCEEEEeeC-CCcEEEeeccccc
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHT--KRMQRV--FCVKFSCDASYVISGSD-DTNLRLWKAKASE 365 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v--~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 365 (452)
+++ |+.|++||+++++....+.. .+...+ .+++|+|+|++|++++. |+.|++|++....
T Consensus 231 s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 231 VEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp EEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 999 55999999998876544432 111223 46999999999999988 9999999986654
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.3e-34 Score=258.65 Aligned_cols=276 Identities=11% Similarity=0.092 Sum_probs=208.0
Q ss_pred CCCCCchhhhhhhHhhhhHHHhhhhhcc--ccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc---eEE
Q 012994 29 DPNLRPQEKAVEYVRALTAAKLEKIFAR--PFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR---TVC 103 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~---~~~ 103 (452)
...++|....+........+++|+.... ..+..+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++ ...
T Consensus 16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~~~~~~~ 94 (377)
T 3dwl_C 16 EHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDGTWKQTL 94 (377)
T ss_dssp CCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------CCCCEE
T ss_pred EEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCCceeeee
Confidence 3456666666665556677889998877 7888999999999999999998 999999999999999999877 677
Q ss_pred EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeC
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 182 (452)
.+.+|...|.+++|+|++++|++++.||.|++||+..+.... ....... +...+.+++|+|++.++++++
T Consensus 95 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 165 (377)
T 3dwl_C 95 VLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW---------VSKHLKRPLRSTILSLDWHPNNVLLAAGC 165 (377)
T ss_dssp ECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC---------CCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred EecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce---------eeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence 788899999999999999999999999999999998764210 1112222 567899999999999999886
Q ss_pred --CeEEEEeCCC------------------CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC----
Q 012994 183 --AQVDIWNHNR------------------SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP---- 238 (452)
Q Consensus 183 --~~i~i~d~~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 238 (452)
+.+++||+.. ++.+..+ .|...|.+++|+|++ .+|++++.||.|++||+++...
T Consensus 166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCccee
Confidence 5799999853 3455556 788999999999988 7899999999999999999887
Q ss_pred ceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCcc-c------------------------------------
Q 012994 239 ARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD-E------------------------------------ 280 (452)
Q Consensus 239 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~------------------------------------ 280 (452)
+..+.. ...+.+++|+|++.. +++++.++.+ +|+..... .
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAI-VAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALR 321 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEE-EEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----------
T ss_pred eEeecCCCCceEEEEEcCCCCE-EEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccc
Confidence 555543 446789999998764 5666655555 66554211 0
Q ss_pred --------------cceeeeCcccceEEEEEcCCC-C---EEEEEeCCCeEEEEEC
Q 012994 281 --------------AKCVHMGHESAVMDIDYSPTG-R---EFVTGSYDRTIRIFQY 318 (452)
Q Consensus 281 --------------~~~~~~~~~~~v~~~~~s~~g-~---~l~s~~~dg~i~iwd~ 318 (452)
.......|...|+++++.+.. . .|+||+.||.|++||+
T Consensus 322 ~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 322 STFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ---------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000111389999999976643 3 6999999999999985
No 106
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-32 Score=241.66 Aligned_cols=240 Identities=16% Similarity=0.219 Sum_probs=191.2
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhc--cccccccccccccEEEEEeCCC--CcceEEEeeCCCcEEEEeCCCCc--eEEEe
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFA--RPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQY 105 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~h~~~V~~~~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~ 105 (452)
+.|....+........+++|++.. ..++.+|.+|.+.|++++|+|+ + .+|++|+.||+|++||+.+++ .+..+
T Consensus 17 ~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~~~~~~~~~~~ 95 (297)
T 2pm7_B 17 MDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEENGRWSQIAVH 95 (297)
T ss_dssp ECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBSSSCBCCCEEE
T ss_pred ECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcCCCceEEEEEe
Confidence 445555555556667788888753 3677899999999999999874 6 899999999999999998874 56677
Q ss_pred ecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC---------
Q 012994 106 SGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE--------- 174 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 174 (452)
.+|...|.+++|+|+ +.+|++++.||+|++||+..+.. ........+...+.+++|+|+
T Consensus 96 ~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 165 (297)
T 2pm7_B 96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----------TSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (297)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----------BCCEEEECCSSCEEEEEECCCC--------
T ss_pred ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----------eeeeeeecccCccceEeecCCcccccccCC
Confidence 889999999999997 88999999999999999976521 112344556778899999987
Q ss_pred ----CCeEEEeC--CeEEEEeCCCCC----cceecccCCCceEEEEECCCC--CcEEEEEecCCeEEEEEccCCCCceEE
Q 012994 175 ----GDLFATAG--AQVDIWNHNRSQ----PINSFQWGTDTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKV 242 (452)
Q Consensus 175 ----~~~~~~~~--~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 242 (452)
+.++++++ +.|++||+.++. ....+.+|...|.+++|+|++ +.+|++++.|++|++||++........
T Consensus 166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccce
Confidence 46788775 679999998876 556788899999999999985 478999999999999998764321110
Q ss_pred EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 243 IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.. .....|...|.+++|+|+|++|++++.||.|++|+...
T Consensus 246 ~~--------------------------------------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 246 TL--------------------------------------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EE--------------------------------------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ee--------------------------------------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 00 00125677899999999999999999999999999863
No 107
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=7.3e-32 Score=244.49 Aligned_cols=287 Identities=14% Similarity=0.148 Sum_probs=227.2
Q ss_pred EEeCCCCceEEEeecCCCCeeEEEEccC---CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeee
Q 012994 93 LWDIANRRTVCQYSGHQGAVRGLTVSTD---GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV 169 (452)
Q Consensus 93 iwd~~~~~~~~~~~~h~~~v~~l~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (452)
.|+....+.+..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+... ........+...+.++
T Consensus 23 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 23 TDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQMHTGPVLDV 92 (368)
T ss_dssp CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEECSSCEEEE
T ss_pred cCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEeccccCCEEEE
Confidence 3455666778888999999999999998 59999999999999999976311 1113455678899999
Q ss_pred eecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEE--CCCCCcEEEEEecCCeEEEEEccCCCCceEEEee
Q 012994 170 DHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRF--NPAEPNVLATTASDRSITLYDLRMSSPARKVIMR 245 (452)
Q Consensus 170 ~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 245 (452)
+|++++.++++++ +.|++||+.+++.+. +..|...|.+++| +|++ .+|++++.||.|++||+++.+....+...
T Consensus 93 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred EECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 9999999999886 679999999988666 5568999999999 8877 78999999999999999999998888877
Q ss_pred cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceee-eCcccceEEEEEcCCCCE----EEEEeCCCeEEEEECCC
Q 012994 246 TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVH-MGHESAVMDIDYSPTGRE----FVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~----l~s~~~dg~i~iwd~~~ 320 (452)
....++.+.+. .+++++.++.+.+|+.+......... ..+...+.++++.+++.. +++++.||.|++||+..
T Consensus 171 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 171 ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 76666666543 57788889999999998754433322 233345566666655544 99999999999999998
Q ss_pred Cc---eeeeeccCCc-----------CcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChhhhhhhHHHHHHHH
Q 012994 321 GR---SREIYHTKRM-----------QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKN 386 (452)
Q Consensus 321 ~~---~~~~~~~~~~-----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (452)
.. ....+..+.. ..|++++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------- 312 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE--------------- 312 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC---------------
T ss_pred CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec---------------
Confidence 73 3333333321 169999999999999999999999999999998887664
Q ss_pred hhccCccccccccCCCCChhhHHHH
Q 012994 387 RYKHLPEIKRIVRHRHLPKPIYKAA 411 (452)
Q Consensus 387 ~~~~~~~~~~~~~~~~~p~~~~~~~ 411 (452)
.|...+..++|+|+...++..+.
T Consensus 313 --~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 313 --QLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp --CCSSCEEEEEECTTSSCEEEEEC
T ss_pred --CCCCCceEEEECCCCCeEEEEec
Confidence 56778899999998877665443
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=258.20 Aligned_cols=264 Identities=11% Similarity=0.063 Sum_probs=204.7
Q ss_pred hhhhHHHhhhhhccccc----cccccccccEEEEEeCCCC-----cceEEEeeCCCcEEEEeCCCCce-----------E
Q 012994 43 RALTAAKLEKIFARPFI----GALDGHRDGISCMAKNPNY-----LKGFFSGSMDGDIRLWDIANRRT-----------V 102 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~----~~l~~h~~~V~~~~~~~~~-----~~~l~tg~~dg~i~iwd~~~~~~-----------~ 102 (452)
.....+++|++....+. ..+.+|.+.|.+++|+|++ ..+||+|+.||+|++||+.++.. .
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~ 259 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPS 259 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCS
T ss_pred CCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCce
Confidence 34445678887655532 4567889999999999971 27999999999999999986632 2
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeee--eecCCC-CeEE
Q 012994 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAV--DHQWEG-DLFA 179 (452)
Q Consensus 103 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~ 179 (452)
..+.+|...|++++|+++ ..|++|+.||+|++||+.++.. .......+...|.++ .+++++ .+++
T Consensus 260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-----------~~~~~~~H~~~V~sv~~~~s~~g~~~la 327 (524)
T 2j04_B 260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-----------PSFYDQVHDSYILSVSTAYSDFEDTVVS 327 (524)
T ss_dssp EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS-----------CSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC-----------ceEEeecccccEEEEEEEcCCCCCeEEE
Confidence 467889999999999986 4899999999999999976521 112344567789988 578887 8888
Q ss_pred EeC--CeEEEEeCCCCCcceecccCCC--ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEc
Q 012994 180 TAG--AQVDIWNHNRSQPINSFQWGTD--TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWN 254 (452)
Q Consensus 180 ~~~--~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~ 254 (452)
+++ +.+++||+++++....+.+|.. .|.+++|+|++ ..+++++.|++|++||+++......+. +...+.+++|+
T Consensus 328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S 406 (524)
T 2j04_B 328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVS 406 (524)
T ss_dssp EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECC
T ss_pred EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeC
Confidence 876 6799999998887777766543 57899999988 578899999999999999988766554 45678999999
Q ss_pred cCCCceEEeecCCCeEEEEeCCCc-------------------------------------------cccceeeeCcccc
Q 012994 255 PMEPMNFTAANEDCNCYSYDSRKL-------------------------------------------DEAKCVHMGHESA 291 (452)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~~d~~~~-------------------------------------------~~~~~~~~~~~~~ 291 (452)
|++.. +++|+.|+.+++||.... ......+.+|...
T Consensus 407 p~g~~-l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 407 RLHPM-VLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGIN 485 (524)
T ss_dssp SSCCB-CEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCS
T ss_pred CCCCe-EEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCce
Confidence 99875 778999999999875321 0001123367889
Q ss_pred eEEEEEcCCCC---EEEEEeCCCeEEEEECCC
Q 012994 292 VMDIDYSPTGR---EFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 292 v~~~~~s~~g~---~l~s~~~dg~i~iwd~~~ 320 (452)
|.+++|+|++. ++|+|+.||.|+||++..
T Consensus 486 V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 99999999954 999999999999999864
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2.5e-31 Score=239.08 Aligned_cols=249 Identities=14% Similarity=0.137 Sum_probs=184.7
Q ss_pred EEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec
Q 012994 93 LWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ 172 (452)
Q Consensus 93 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (452)
||++.+.+.+..+..|...|++++|+|||++|++|+.|| +++||+..+.. .. ......+..+.+.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-------------~~-~~~~~~~~~~~~~ 67 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-------------IM-SQEMRHLSKVRML 67 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-------------EE-EEECSCCCEEEEC
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-------------ee-eeecCCeEEEEEc
Confidence 566777777777889999999999999999999988775 78999865421 11 1222346677888
Q ss_pred CCCCeEEE-eC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEeeccc
Q 012994 173 WEGDLFAT-AG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMRTKS 248 (452)
Q Consensus 173 ~~~~~~~~-~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 248 (452)
+++..++. ++ +.|++||..+++.+..+. +...|.++.++++. ++++ .|+.|++||+.+. +.+..+.. ..
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~ 140 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR--FG 140 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE--EE
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc--CC
Confidence 88887754 33 479999999999988887 56789999998743 4444 4789999999988 66655544 34
Q ss_pred ceEEEccCCCceEEe-ecCCCeEEEEeCCCcc--------------cc-ceeeeCcccceEEEEEcCCCCEEEEEeCCCe
Q 012994 249 NSISWNPMEPMNFTA-ANEDCNCYSYDSRKLD--------------EA-KCVHMGHESAVMDIDYSPTGREFVTGSYDRT 312 (452)
Q Consensus 249 ~~~~~~~~~~~~~~~-~~~~~~i~~~d~~~~~--------------~~-~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~ 312 (452)
..+++++ ..++++ ++.++.+++||+.... .+ ...+.+|...|++++|+|+|++|++|+.||+
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 4555666 344444 7899999999998754 11 5567799999999999999999999999998
Q ss_pred -EEEEECCCCceeeeeccC-CcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 313 -IRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 313 -i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
|++||+.+++.+..+..+ |...|++++|+|++++|++++.|+.|++||+..+.
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 999999999998888743 77899999999999999999999999999998754
No 110
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=254.26 Aligned_cols=255 Identities=14% Similarity=0.216 Sum_probs=193.0
Q ss_pred CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCC-CeeEEEec------------CCeeeeeecCC
Q 012994 108 HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSE-PLAVYVWK------------NSFWAVDHQWE 174 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~~ 174 (452)
|.+.|++++|+|++++||+|+.||.|++||+.++......... ... ......+. ..+.+++|+++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~--~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG--EYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC--CEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc--ceeEecccccccccccccccccccCceEEEEEcCC
Confidence 6789999999999999999999999999999876421110000 000 11222333 67999999999
Q ss_pred C--CeEEEeC--CeEEEEeCCCCCcc---------------------------------------ee-cccCCCceEEEE
Q 012994 175 G--DLFATAG--AQVDIWNHNRSQPI---------------------------------------NS-FQWGTDTVISVR 210 (452)
Q Consensus 175 ~--~~~~~~~--~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~i~~~~ 210 (452)
+ ..+++++ +.|++||+.++... .. ...|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 6777765 67999998764321 11 356899999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCC-CceEE--------EeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSS-PARKV--------IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
|+|++ .+|++| .||.|++||++... ....+ .+...+.+++|+|++..++++++.|+.|++||++.....
T Consensus 185 ~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 185 INSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp ECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 99987 788888 79999999998433 33322 234557899999999788999999999999999876541
Q ss_pred ---ceeeeCccc------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceeeeeccCCc-----------C-
Q 012994 282 ---KCVHMGHES------------AVMDIDYSPTGREFVTGSYDRTIRIFQYNG-GRSREIYHTKRM-----------Q- 333 (452)
Q Consensus 282 ---~~~~~~~~~------------~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~-----------~- 333 (452)
...+.+|.. .|.+++|+|+|++|++++. |.|++||+.. ++.+..+..+.. .
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 445556665 8999999999999999998 9999999997 666665543320 0
Q ss_pred --cEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 334 --RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 334 --~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
.+..++|+|++++|++|+.||.|++||+.+++.+
T Consensus 342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 1345999999999999999999999999998775
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.8e-32 Score=243.98 Aligned_cols=243 Identities=12% Similarity=0.112 Sum_probs=192.2
Q ss_pred ccccccccEEEEEeCCCCcceEEE-----------eeCCCcEEEEeCCCCceEE----Ee-----ecCCCCeeEEEEccC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFS-----------GSMDGDIRLWDIANRRTVC----QY-----SGHQGAVRGLTVSTD 120 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~t-----------g~~dg~i~iwd~~~~~~~~----~~-----~~h~~~v~~l~~~~~ 120 (452)
.|.+|.+.|.+++++++ .+++ |+.|+.+++|++.+..... .. ..+...+.+++|+||
T Consensus 68 ~l~~~~~~v~s~~~~~~---~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKG---IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp ECCTTSCCCCEEEEETT---EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EccCCCCceEEEEeCCC---EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 57889999999988754 3444 4568889999987653221 11 234456899999999
Q ss_pred CCeEEEE--eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcce
Q 012994 121 GRILVSC--GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPIN 197 (452)
Q Consensus 121 ~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~ 197 (452)
|++|+++ +.|++|+|||+.++ .......+...+.+++|+|+|.++++++ +.+.+|+..++..+.
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~-------------~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~ 211 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDL-------------TEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA 211 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTT-------------EEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCC-------------cEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence 9998754 47899999999876 3344456778899999999999999887 568888888877654
Q ss_pred --ecccCCCceEEEEECCCCCcEEEEEecCC----eEEEEEccCCCCceE----EE-eecccceEEEccCCCceEEeecC
Q 012994 198 --SFQWGTDTVISVRFNPAEPNVLATTASDR----SITLYDLRMSSPARK----VI-MRTKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 198 --~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (452)
....|...|.+++|+|++ ..+++++.|+ .+.+||+........ +. ....+.+++|+|++.. +++++.
T Consensus 212 ~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~ 289 (365)
T 4h5i_A 212 RKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL-AVLASN 289 (365)
T ss_dssp EECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE-EEEEET
T ss_pred eeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc-eEEEcC
Confidence 345578899999999998 7888888877 688898876653221 11 2345789999998865 888999
Q ss_pred CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 267 DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 267 ~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
|+.|++||..+.........+|...|++++|||||++||+|+.|++|+|||+...
T Consensus 290 D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 290 DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999887776667799999999999999999999999999999999653
No 112
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.4e-31 Score=248.13 Aligned_cols=272 Identities=15% Similarity=0.282 Sum_probs=209.4
Q ss_pred hhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCe
Q 012994 44 ALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRI 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 123 (452)
....+++|+..+...+..+.+|.+.|++++| ++ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .+
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~ 225 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GM 225 (435)
T ss_dssp SSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TE
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CE
Confidence 3445678888888889999999999999999 55 8999999999999999999999999999999999999974 59
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~ 201 (452)
|++|+.||.|++||+.++.... .......+...+.++.+ ++..+++++ +.+++||+.+++.+..+..
T Consensus 226 l~s~s~dg~i~vwd~~~~~~~~---------~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 294 (435)
T 1p22_A 226 MVTCSKDRSIAVWDMASPTDIT---------LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294 (435)
T ss_dssp EEEEETTSCEEEEECSSSSCCE---------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEeeCCCcEEEEeCCCCCCce---------eeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC
Confidence 9999999999999998764210 00223345567777877 677777775 6799999999999999999
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccc
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE 280 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 280 (452)
|...|.++.++ + .++++|+.||.|++||++++..+..+.. ...+.++.+ .+..+++++.|+.|++||+.....
T Consensus 295 ~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~ 368 (435)
T 1p22_A 295 HKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALD 368 (435)
T ss_dssp CSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTS
T ss_pred CCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999995 3 6899999999999999999888777663 345667777 455699999999999999876542
Q ss_pred --------cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEc
Q 012994 281 --------AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 281 --------~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 341 (452)
....+.+|...|++++| ++.+|++|+.||.|++||+.+.......... .+..++.|.
T Consensus 369 ~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 433 (435)
T 1p22_A 369 PRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPR--SPSRTYTYI 433 (435)
T ss_dssp TTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------------------
T ss_pred ccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCC--CCccceeee
Confidence 34556689999999999 7889999999999999999886654433222 345555554
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=2.6e-30 Score=236.38 Aligned_cols=302 Identities=13% Similarity=0.138 Sum_probs=234.7
Q ss_pred hHHHhhhhhccccccccccccccEEEEEeCCCCcceE-EEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeE
Q 012994 46 TAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGF-FSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l-~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
..+.+|+...+.++..+.+|.. +.+++|+|++ .++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|
T Consensus 12 ~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg-~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l 88 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPVGSN-PMGAVISPDG-TKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQV 88 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSS-EEEEEECTTS-SEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEE
T ss_pred CEEEEEECCCCeEEEEeecCCC-cceEEECCCC-CEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEE
Confidence 3456777777788888887754 8999999998 655 788899999999999999988887555 89999999999987
Q ss_pred EEE-eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE-EEeC--CeEEEEeCCCCCcceecc
Q 012994 125 VSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF-ATAG--AQVDIWNHNRSQPINSFQ 200 (452)
Q Consensus 125 ~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~i~d~~~~~~~~~~~ 200 (452)
+.+ +.|+.|++||+.+++ ..........+..+++++++..+ ++++ +.|.+||+.+++.+..+.
T Consensus 89 ~~~~~~~~~v~v~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 155 (391)
T 1l0q_A 89 YVTNMASSTLSVIDTTSNT-------------VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS 155 (391)
T ss_dssp EEEETTTTEEEEEETTTTE-------------EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEECCCCEEEEEECCCCe-------------EEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence 654 467999999998763 33444456678899999999977 4554 579999999998888877
Q ss_pred cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeec--CCCeEEEEeCCCc
Q 012994 201 WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN--EDCNCYSYDSRKL 278 (452)
Q Consensus 201 ~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~ 278 (452)
.+ ..+.+++|+|++..++++++.++.|++||+++......+.....+..++|+|++..+++++. .++.+++||+.+.
T Consensus 156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 65 45699999999965667888899999999999888877777777889999999988777776 7899999999876
Q ss_pred cccceeeeCcccceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCceeeeeccCCcCc------EE---------EEEEcC
Q 012994 279 DEAKCVHMGHESAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGGRSREIYHTKRMQR------VF---------CVKFSC 342 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~g~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------v~---------~~~~s~ 342 (452)
.... ....| ..+.+++|+|+|++| ++++.|+.|++||+.+++....+..+. .+ +. ...|+.
T Consensus 235 ~~~~-~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~fs~ 311 (391)
T 1l0q_A 235 KITA-RIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK-NPYASGQFIGSIPVQPVYPSADFKS 311 (391)
T ss_dssp EEEE-EEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEECCSSCEEECSSCCCCCBCCEEE
T ss_pred eEEE-EEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc-CCCccceeeeccccccccccccccc
Confidence 5443 33334 357899999999987 677889999999999988776654332 11 10 111222
Q ss_pred CC----------CEEEEeeCCCcEEEeeccccccc
Q 012994 343 DA----------SYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 343 ~~----------~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
+. -.+...+.|..+++|++.+|...
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~ 346 (391)
T 1l0q_A 312 NITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS 346 (391)
T ss_dssp SCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE
T ss_pred ccccccccccceEEEEeCCCCceEEEEECCCCccc
Confidence 11 23556677889999999887653
No 114
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.9e-32 Score=247.27 Aligned_cols=243 Identities=16% Similarity=0.166 Sum_probs=169.2
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE-----EeecCCCCeeEEEEcc--------CCCeEEEEeCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-----QYSGHQGAVRGLTVST--------DGRILVSCGTD 130 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~-----~~~~h~~~v~~l~~~~--------~~~~l~s~~~d 130 (452)
+|...+....+.+++ .+|++|+.|++|+|||..+++... .+.+|.+.|++++|+| |+++||+|+.|
T Consensus 87 ~~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp ----------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred ccCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 344444444455555 789999999999999998876532 3578999999999998 78899999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
++|+|||+.++ .++..+..|...+.+++
T Consensus 166 ~tv~~Wd~~~~----------------------------------------------------~~~~~~~~~~~~v~~v~ 193 (393)
T 4gq1_A 166 CTLIIWRLTDE----------------------------------------------------GPILAGYPLSSPGISVQ 193 (393)
T ss_dssp SEEEEEEEETT----------------------------------------------------EEEEEEEECSSCEEEEE
T ss_pred CeEEEEECCCC----------------------------------------------------ceeeeecCCCCCcEEEE
Confidence 99999998543 22334455778999999
Q ss_pred ECCCCCcEEEEEecCCeEEEEEccCCCCceEEE--------------------------eecccceEEEccCCCceEEee
Q 012994 211 FNPAEPNVLATTASDRSITLYDLRMSSPARKVI--------------------------MRTKSNSISWNPMEPMNFTAA 264 (452)
Q Consensus 211 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 264 (452)
|+|++.++|++|+.||.|++||+++++...... ....+.++.|.+.....++++
T Consensus 194 ~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~ 273 (393)
T 4gq1_A 194 FRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM 273 (393)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred ECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence 999987789999999999999998876543321 123345777775555678899
Q ss_pred cCCCeEEEEeCCCccccceeeeCcccceE------------------EEEEcC--CCCEEEEEeCCCeEEEEECCCCcee
Q 012994 265 NEDCNCYSYDSRKLDEAKCVHMGHESAVM------------------DIDYSP--TGREFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 265 ~~~~~i~~~d~~~~~~~~~~~~~~~~~v~------------------~~~~s~--~g~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
+.++.+++||+........ +..|...+. ...|+| ++.++++|+.||.|++||+.++...
T Consensus 274 s~d~~i~vwd~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 274 CKSGAWLRWNLFANNDYNE-ISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp CTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred eCCCCEEEEECccCCCCce-EeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 9999999999876432221 112222222 233443 4456778889999999999999887
Q ss_pred eeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 325 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 325 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.....++ .+|.+++|+|||++|++++.|| +.+|++.
T Consensus 353 ~~~~~~~-~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 353 SIPIQLG-MPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEECS-SCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEecCCC-CcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 6665444 7899999999999999998776 5666654
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.6e-30 Score=222.86 Aligned_cols=292 Identities=12% Similarity=0.102 Sum_probs=190.1
Q ss_pred ccccccccccc----cEEEEEeCCCC-cc-eEEEeeCCCcEEEEeCCCC---ceEEEeecCCCCeeEEEEccCCCeEEEE
Q 012994 57 PFIGALDGHRD----GISCMAKNPNY-LK-GFFSGSMDGDIRLWDIANR---RTVCQYSGHQGAVRGLTVSTDGRILVSC 127 (452)
Q Consensus 57 ~~~~~l~~h~~----~V~~~~~~~~~-~~-~l~tg~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~s~ 127 (452)
+++..|+...+ .+.++.|-..+ .. .+++++ ...|++|+..++ +.++++..|+.+|..+.+.||..-|+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 45555554433 35666675544 12 455565 568999999998 8889999998888877777754322222
Q ss_pred eC--CCcEEEEeCCCCCCCCCCCCCCCC-CCCeeEEEecCCeeeeeecCCCCeEEEe----CCeEEEEeC-CCCCcceec
Q 012994 128 GT--DCTVKLWNVPVATLTDSDDSTDNS-SEPLAVYVWKNSFWAVDHQWEGDLFATA----GAQVDIWNH-NRSQPINSF 199 (452)
Q Consensus 128 ~~--dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~i~d~-~~~~~~~~~ 199 (452)
.- =..-.++.+....- ... ............+..+ ++++++.++ ++.|++|++ .+++.+..+
T Consensus 105 ~~~~~~~~~v~sla~spd-------~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSD-------DESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp EECSSSEEEEEEECC-------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEE
T ss_pred eeccccccceEEEEECCC-------ccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeee
Confidence 11 00001111100000 000 0000000111112222 456666664 357999999 447777888
Q ss_pred ccCCCceEEEEECC--CCCcEEEEEecCCeEEEEEccCCCCceEEEee----cccceEEEccCCCce-----------EE
Q 012994 200 QWGTDTVISVRFNP--AEPNVLATTASDRSITLYDLRMSSPARKVIMR----TKSNSISWNPMEPMN-----------FT 262 (452)
Q Consensus 200 ~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----------~~ 262 (452)
..|...+..++|++ .++.+|++++.|++|+|||+.+++.+..+... ..+..++|+|++..+ ++
T Consensus 175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------
T ss_pred ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 88888888888888 23378999999999999999999998888632 234566899988765 36
Q ss_pred eecCCCeEEEEeCCCcccccee----eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 263 AANEDCNCYSYDSRKLDEAKCV----HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
+|+.|+.+++||..+....... ..+|...+.+..+ ++.++++|+.||+|+|||+.+++.+..+..++...+.++
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v 332 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV 332 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEE
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE
Confidence 7888999999999876543322 1356555544444 378899999999999999999999988865554445579
Q ss_pred EEcCCCCEEEEeeCCCcEEEeec
Q 012994 339 KFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
+|+|||++|++|+.|++|+|||+
T Consensus 333 afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 333 KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EECSSSSEEEEECTTSCEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999999985
No 116
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.3e-32 Score=238.71 Aligned_cols=255 Identities=14% Similarity=0.150 Sum_probs=181.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccc--cccccccccccEEEEEeCCC--CcceEEEeeCCCcEEEEeCCCC--ceEEE
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARP--FIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANR--RTVCQ 104 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~~~~~~~--~~~~l~tg~~dg~i~iwd~~~~--~~~~~ 104 (452)
.+.|....+........+++|++.... ++..|.+|.+.|++++|+|+ + ++|++|+.|++|++||+.++ +....
T Consensus 20 ~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s~D~~v~iWd~~~~~~~~~~~ 98 (316)
T 3bg1_A 20 QMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCSYDRKVIIWREENGTWEKSHE 98 (316)
T ss_dssp EECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred eEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEECCCEEEEEECCCCcceEEEE
Confidence 345556666666667778899886543 56789999999999999863 6 89999999999999999887 35667
Q ss_pred eecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 105 YSGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
+.+|...|.+++|+|+ +.+|++|+.||+|++||+..+...... .....+...+.++.|+|+...
T Consensus 99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~----- 164 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK---------KINNAHTIGCNAVSWAPAVVP----- 164 (316)
T ss_dssp ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEEC---------CBTTSSSSCBCCCEECCCCCC-----
T ss_pred ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCccee---------eeeccccCCcceEEEccccCC-----
Confidence 8899999999999997 789999999999999998654210000 000011223334444443210
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC---ceEEE-eecccceEEEccCC-
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP---ARKVI-MRTKSNSISWNPME- 257 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~-~~~~~~~~~~~~~~- 257 (452)
+.+ .+... + ..+....+|++|+.|+.|++||++.... ...+. +...+.+++|+|++
T Consensus 165 ~~~--~~~~~-----------~------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 165 GSL--IDHPS-----------G------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp --------CC-----------S------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred ccc--ccccc-----------c------cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 000 00000 0 0011126899999999999999975532 22222 34567899999986
Q ss_pred --CceEEeecCCCeEEEEeCCCcc---ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 258 --PMNFTAANEDCNCYSYDSRKLD---EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 258 --~~~~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
...+++++.|+.|++|+..... ........|...|.+++|+|+|++|++|+.||.|++|+..
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 4679999999999999987632 1223445788999999999999999999999999999975
No 117
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8.6e-31 Score=239.15 Aligned_cols=281 Identities=9% Similarity=0.029 Sum_probs=208.7
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~ 110 (452)
.++|.+...+.......++ + ......+.||.+.|.+++|+|+| .++.+.+|+... ..+..+ .|..
T Consensus 22 ~~SpDG~~iASas~D~TV~--d---~~~~~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~-~~~~~~-~~~~ 86 (588)
T 2j04_A 22 TWARDGTLYLTTFPDISIG--Q---PKYAKDINCNSKNLFHVKEFPLE--------FENKLDFELAQQ-NGLLNS-QPVC 86 (588)
T ss_dssp EECTTSCEEEECSSSEEEE--E---ECCCSCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCS-SCSSTT-SCSC
T ss_pred EECCCCCEEEEEcCCceee--c---ccccceecCCCccEEEEEECCCC--------CcceEEEEeCCC-ceEeec-CCCC
Confidence 4566665555444444444 2 44556678999999999999996 466666666432 223333 4688
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec-----CCeeeeeecCCCCeEEEeC--C
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-----NSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~ 183 (452)
.|.+++|+|+|++||+++.||.|++||... ......+. ..+.+++|+|+|+++++++ |
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------------~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------------MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE---------------EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------------eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 999999999999999999999999999532 11111112 2488999999999999997 6
Q ss_pred eEEEEeCCCCCc-------ceec----ccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc---eEEE--eecc
Q 012994 184 QVDIWNHNRSQP-------INSF----QWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA---RKVI--MRTK 247 (452)
Q Consensus 184 ~i~i~d~~~~~~-------~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~--~~~~ 247 (452)
.|++||+.++.. +..+ .+|...|.+++|+|++ +++++.|+.|++||+...... ..+. +...
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 899999998863 4555 5677899999999976 788999999999999887743 3443 3456
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEE--cCCCCEEEEEeCCCeEEEEECCC-----
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDY--SPTGREFVTGSYDRTIRIFQYNG----- 320 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~dg~i~iwd~~~----- 320 (452)
+.+++|+ + ..+++++ ++.|++||.......... .+|...|.+++| +|++..|++++.||+ ++|..+.
T Consensus 229 V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~sp 302 (588)
T 2j04_A 229 ITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTA 302 (588)
T ss_dssp CCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEEC
T ss_pred EEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECC
Confidence 8899999 4 5566665 699999999875543333 389999999999 999999999999999 9998741
Q ss_pred -C-----------------ceeeeeccCCcCcEEEEEEcCCCCEEEEeeC
Q 012994 321 -G-----------------RSREIYHTKRMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 321 -~-----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
+ .....+ .+...|.+++|||||+.+|+++.
T Consensus 303 d~~l~a~~d~~v~lW~~~g~~l~~~--~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYLEKKFKKWSTIWNEFNNY--ETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHHHHHHHHTTTTTTSSSSS--CCEEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEcCCEEEEEECCCCceeee--ccceEEEEEEECCCCCEEEEEEe
Confidence 1 111111 11245999999999999998874
No 118
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.5e-31 Score=238.09 Aligned_cols=292 Identities=13% Similarity=0.136 Sum_probs=200.1
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhcc----ccccccccccccEEEEEeCC--CCcceEEEeeCCCcEEEEeCCCC------
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFAR----PFIGALDGHRDGISCMAKNP--NYLKGFFSGSMDGDIRLWDIANR------ 99 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~h~~~V~~~~~~~--~~~~~l~tg~~dg~i~iwd~~~~------ 99 (452)
++|....+........+++|++... .+...+.+|.+.|++++|+| ++ .+|++|+.||.|++||+.++
T Consensus 19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~ 97 (351)
T 3f3f_A 19 YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECSG 97 (351)
T ss_dssp ECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTSS
T ss_pred EcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCcccccc
Confidence 4444555544555566788887654 46778899999999999999 46 99999999999999999877
Q ss_pred ---ceEEEeecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCC-CCCeeEEEecCCeeeeeecC
Q 012994 100 ---RTVCQYSGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNS-SEPLAVYVWKNSFWAVDHQW 173 (452)
Q Consensus 100 ---~~~~~~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 173 (452)
+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.++............ ........+...+.+++++|
T Consensus 98 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 177 (351)
T 3f3f_A 98 RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCP 177 (351)
T ss_dssp CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECC
T ss_pred cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEecc
Confidence 557788899999999999999 999999999999999999887654432210000 00000112445788999999
Q ss_pred C---CCeEEEeC--CeEEEEeCCCCCc--ceecccCCCceEEEEECCCCC---cEEEEEecCCeEEEEEccCCCCceEEE
Q 012994 174 E---GDLFATAG--AQVDIWNHNRSQP--INSFQWGTDTVISVRFNPAEP---NVLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 174 ~---~~~~~~~~--~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
+ +..+++++ +.+.+|+...+.. +..+..|...|.+++|+|+++ .+|++|+.||.|++||++.........
T Consensus 178 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 257 (351)
T 3f3f_A 178 SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE 257 (351)
T ss_dssp CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------
T ss_pred CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC
Confidence 7 88888876 3576676666654 677788999999999999874 689999999999999998765443322
Q ss_pred eecc-cceEEEccCCCceEEee----cCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 244 MRTK-SNSISWNPMEPMNFTAA----NEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
.... .......+.... ...+ .....+.+|+.... .....+.+|...|++++|+|++++|++|+.||.|++||+
T Consensus 258 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 258 ESLTNSNMFDNSADVDM-DAQGRSDSNTEEKAELQSNLQV-ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ----------------------------------CCSEEE-EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred CcccceeccCCCccccc-ccccccccccceeeeecccccc-cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 1111 111111111111 1111 12223333333322 233455689999999999999999999999999999999
Q ss_pred CCCceeee
Q 012994 319 NGGRSREI 326 (452)
Q Consensus 319 ~~~~~~~~ 326 (452)
.+++....
T Consensus 336 ~~~~~~~~ 343 (351)
T 3f3f_A 336 TYSNEFKC 343 (351)
T ss_dssp CTTSCEEE
T ss_pred CcCcchhh
Confidence 98765443
No 119
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.1e-30 Score=235.85 Aligned_cols=240 Identities=15% Similarity=0.192 Sum_probs=195.1
Q ss_pred CCchhhhhhhHhhhhHHHhhhhh--ccccccccccccccEEEEEeCCC--CcceEEEeeCCCcEEEEeCCCCc--eEEEe
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIF--ARPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQY 105 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~~ 105 (452)
++|....+........+.+|++. ....+..+.+|.+.|++++|+|+ + .+|++|+.||.|++||+.+++ .+..+
T Consensus 19 ~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 97 (379)
T 3jrp_A 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAVH 97 (379)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCCceeEeeee
Confidence 44555555545555667888886 66778889999999999999987 7 999999999999999999887 67778
Q ss_pred ecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC
Q 012994 106 SGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (452)
..|...|.+++|+|+ +.+|++++.||.|++||+.....
T Consensus 98 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------------------------------------- 137 (379)
T 3jrp_A 98 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------------------------------------- 137 (379)
T ss_dssp CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----------------------------------------
T ss_pred cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----------------------------------------
Confidence 889999999999998 99999999999999999975521
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCC------------CCcEEEEEecCCeEEEEEccCCCCceEEE-----eec
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPA------------EPNVLATTASDRSITLYDLRMSSPARKVI-----MRT 246 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~ 246 (452)
.....+..|...|.+++|+|. ++.++++++.||.|++||+++........ +..
T Consensus 138 ----------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 138 ----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207 (379)
T ss_dssp ----------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred ----------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence 112233457788999999984 34799999999999999999876543332 245
Q ss_pred ccceEEEccCC--CceEEeecCCCeEEEEeCCCccccc----eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 247 KSNSISWNPME--PMNFTAANEDCNCYSYDSRKLDEAK----CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 247 ~~~~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.+.+++|+|++ ...+++++.|+.+++||++...... .....|...|++++|+|+|++|++++.||.|++|++..
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 67899999996 6789999999999999998764221 12234788999999999999999999999999999985
Q ss_pred Cc
Q 012994 321 GR 322 (452)
Q Consensus 321 ~~ 322 (452)
+.
T Consensus 288 ~~ 289 (379)
T 3jrp_A 288 EG 289 (379)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.4e-29 Score=234.06 Aligned_cols=252 Identities=8% Similarity=0.022 Sum_probs=198.1
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC---CCCCCCCCCC--------------------C-------------
Q 012994 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT---LTDSDDSTDN--------------------S------------- 153 (452)
Q Consensus 110 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~---~~~~~~~~~~--------------------~------------- 153 (452)
.++.+++|+++|++|+++ .++.|++||+.+++ .......... .
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999966655 57899999998887 3222111000 0
Q ss_pred ---------CCCeeEEEecCCeeeeeecCCCCeE-EEeC--CeEEEEeCC--CCCcceecc--cCCCceEEEEECCCCCc
Q 012994 154 ---------SEPLAVYVWKNSFWAVDHQWEGDLF-ATAG--AQVDIWNHN--RSQPINSFQ--WGTDTVISVRFNPAEPN 217 (452)
Q Consensus 154 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~i~i~d~~--~~~~~~~~~--~~~~~i~~~~~~~~~~~ 217 (452)
........+...+.+++|+|++.++ ++++ +.|++||+. +++.+..+. .+...|.+++|+|++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD-T 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-S
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-C
Confidence 0000001223469999999999996 6664 789999999 888888776 567899999999988 7
Q ss_pred EEEEEecCCeEEEEEccCCCCce----E-EEeecccceEEEccC--CCceEEeecCCCeEEEEeCCCccccceeeeCccc
Q 012994 218 VLATTASDRSITLYDLRMSSPAR----K-VIMRTKSNSISWNPM--EPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES 290 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~----~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 290 (452)
+|++|+.||.|++|++.+..... . ..+...+.+++|+|+ +...+++++.|+.|++||+...........+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 89999999999999998876543 3 234567889999998 3556888999999999999877666555668999
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc------------------------CCcCcEEEEEEcCCCCE
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT------------------------KRMQRVFCVKFSCDASY 346 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------~~~~~v~~~~~s~~~~~ 346 (452)
.|++++|+ ++++|++|+.|+.|++||+.+++.+..+.. .....|.+++|+|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 999999999999999999999987766532 12356999999999999
Q ss_pred EEEee-CCCcEEEeec--ccc
Q 012994 347 VISGS-DDTNLRLWKA--KAS 364 (452)
Q Consensus 347 l~s~~-~dg~i~iw~~--~~~ 364 (452)
|++++ .|+.|++|++ .++
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~ 342 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQK 342 (450)
T ss_dssp EEEEETTCSEEEEEEECSSST
T ss_pred EEEEECCCCeEEEEEeccCCC
Confidence 99998 8999999999 555
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.8e-29 Score=233.36 Aligned_cols=230 Identities=21% Similarity=0.320 Sum_probs=191.8
Q ss_pred hhhhHHHhhhhhc----------cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-------EEEe
Q 012994 43 RALTAAKLEKIFA----------RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-------VCQY 105 (452)
Q Consensus 43 ~~~~~~~~~~~~~----------~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-------~~~~ 105 (452)
.....+.+|++.. ...+..+.+|.+.|++++|+|++..+|++|+.||.|++||+.++.. ...+
T Consensus 148 ~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 227 (430)
T 2xyi_A 148 TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIF 227 (430)
T ss_dssp CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE
T ss_pred CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceee
Confidence 3344567788765 4667788999999999999999834999999999999999987322 4566
Q ss_pred ecCCCCeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 106 SGHQGAVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 106 ~~h~~~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
.+|...|.+++|+| ++.+|++++.||.|++||+.++.
T Consensus 228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~------------------------------------------ 265 (430)
T 2xyi_A 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN------------------------------------------ 265 (430)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC------------------------------------------
T ss_pred cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC------------------------------------------
Confidence 78999999999999 77899999999999999997552
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC-CCCceEEE-eecccceEEEccCCCceEE
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKVI-MRTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 262 (452)
..+.+..+..|...|++++|+|++..++++|+.||.|++||++. ...+..+. +...+.++.|+|++..+++
T Consensus 266 -------~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 266 -------TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp -------SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred -------CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 11234455567889999999999877899999999999999998 45566665 4667899999999999999
Q ss_pred eecCCCeEEEEeCCCcc-------------ccceeeeCcccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC
Q 012994 263 AANEDCNCYSYDSRKLD-------------EAKCVHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~~~-------------~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~ 321 (452)
+++.++.|.+||+.... .......+|...|++++|+|++. +|++++.||.|++|++...
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999999998733 33445568889999999999999 8999999999999999754
No 122
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=2e-29 Score=231.28 Aligned_cols=302 Identities=13% Similarity=0.035 Sum_probs=231.1
Q ss_pred ccccEEEEEeCCCCcceEEEee----CCC----cEEEEeC--CCCceE--EEeecCCCCeeEEEEcc-------------
Q 012994 65 HRDGISCMAKNPNYLKGFFSGS----MDG----DIRLWDI--ANRRTV--CQYSGHQGAVRGLTVST------------- 119 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~----~dg----~i~iwd~--~~~~~~--~~~~~h~~~v~~l~~~~------------- 119 (452)
+...+...+|.+.|..++++|+ .|| .|++||+ .+++.+ ..+.+|...+..+++++
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 4467888999999877888886 467 8999999 888877 45888988888888775
Q ss_pred -CCCeEEEEeCC------CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-----CeEEE
Q 012994 120 -DGRILVSCGTD------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----AQVDI 187 (452)
Q Consensus 120 -~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~i 187 (452)
.+..++.++.+ +.|++||+... .......+...+.+++|+|+|..+++++ ..|.+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~-------------~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~ 207 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGY-------------NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVI 207 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSC-------------SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCC-------------CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEE
Confidence 15667666654 79999998643 3445556778899999999999888875 27999
Q ss_pred EeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCe--EEEEEccCCCCceEEEeecccceEEEccCCCceEEeec
Q 012994 188 WNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS--ITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN 265 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (452)
||+.+++.. .+..+...+.+++|+|++..++++++.|+. |.+||+.++..............+.|+|++..+++++.
T Consensus 208 ~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 208 QTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp EETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred EECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence 999998765 456677889999999999545557776655 99999988765333333456678999999998777776
Q ss_pred CCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 266 EDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---RTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 266 ~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
.++ .+++||...... .....+...+.+++|+|+|++|++++.+ +.|++||+.+++..... . + ..+.+++|
T Consensus 287 ~~g~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~-~-~-~~~~~~~~ 361 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-S-T-FLDETPSL 361 (415)
T ss_dssp TTSSCEEEEEETTSSCC--EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-C-S-SSCEEEEE
T ss_pred CCCCcEEEEEECCCCCE--EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEec-C-C-CCcCCeEE
Confidence 555 788888876542 2333566788999999999999988764 58999999988774432 2 2 37999999
Q ss_pred cCCCCEEEEeeCCC---cEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCC
Q 012994 341 SCDASYVISGSDDT---NLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHL 403 (452)
Q Consensus 341 s~~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (452)
+|||++|++++.++ .|++||+..+ ....+. .+...+..++|+|..
T Consensus 362 spdg~~l~~~s~~~~~~~l~~~d~~g~-~~~~l~-----------------~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 362 APNGTMVIYSSSQGMGSVLNLVSTDGR-FKARLP-----------------ATDGQVKFPAWSPYL 409 (415)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTSC-CEEECC-----------------CSSSEEEEEEECCCC
T ss_pred cCCCCEEEEEEcCCCccEEEEEECCCC-cEEEee-----------------CCCCCCcCCcccccc
Confidence 99999999888777 7999998743 343332 567788999998865
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=227.43 Aligned_cols=263 Identities=9% Similarity=0.055 Sum_probs=200.9
Q ss_pred hhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC---------CCceEEEee
Q 012994 36 EKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA---------NRRTVCQYS 106 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~---------~~~~~~~~~ 106 (452)
............+++|+...+..+..+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+.
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 3344445556677889988888777776 678888999986 9999999999999765 445444444
Q ss_pred -cCCCCeeEEEEcc--CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-
Q 012994 107 -GHQGAVRGLTVST--DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG- 182 (452)
Q Consensus 107 -~h~~~v~~l~~~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 182 (452)
+|.+.|.+++|+| ++++|++++.||+|++||+.++...... .......+.+++|+|++.++++++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----------~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH-----------SAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE-----------CCCSSCCCCEEEECTTSCEEEEECT
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-----------ecCCCCceEEEEECCCCCEEEEEcC
Confidence 6778999999999 9999999999999999999876431110 012234688999999999999976
Q ss_pred -CeEEEEeCCCCCcc-eeccc-CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCc
Q 012994 183 -AQVDIWNHNRSQPI-NSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM 259 (452)
Q Consensus 183 -~~i~i~d~~~~~~~-~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (452)
+.|++||+++++.+ ..+.. |...|.+++|+|++ .+|++++ |+.|++||+++......+..
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~~~~~~--------------- 253 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGTLAYPT--------------- 253 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTCBSSCC---------------
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcceeecc---------------
Confidence 68999999999988 78888 99999999999988 7888888 55999999988765432210
Q ss_pred eEEeecCCCeEEEEeCCCccccceeeeCcccce--EEEEEcCCCCEEEEEeC-CCeEEEEECCCCceeeeeccCCcCcEE
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAV--MDIDYSPTGREFVTGSY-DRTIRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v--~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
+..|...+ .+++|+|+|++|++++. |+.|++|++......... .++.
T Consensus 254 -------------------------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~ 303 (343)
T 3lrv_A 254 -------------------------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEES 303 (343)
T ss_dssp -------------------------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEE
T ss_pred -------------------------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCce
Confidence 00122222 47999999999999998 999999999765543322 5688
Q ss_pred EEEEcC---CCCEEEEeeCCCcEEEeecc
Q 012994 337 CVKFSC---DASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 337 ~~~~s~---~~~~l~s~~~dg~i~iw~~~ 362 (452)
.++|++ +...|++++.||.+.++-..
T Consensus 304 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 304 ALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred eEecCccccccceeEEEecCCceEEEEec
Confidence 899998 88999999999999988543
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=2.5e-28 Score=230.59 Aligned_cols=336 Identities=10% Similarity=0.072 Sum_probs=247.2
Q ss_pred CCchhhhhhhHhhhhHHHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeC--CCCceEEEeecCC
Q 012994 32 LRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDI--ANRRTVCQYSGHQ 109 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~--~~~~~~~~~~~h~ 109 (452)
+.|.............+.+|+..++.++.++..+.. +.+++|+|+| ++|++++.|+.|.+||+ .+++.+..+. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-RYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-CEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC-CEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 444333332233344567788888888888873333 8999999999 99999999999999999 8888888887 45
Q ss_pred CCeeEEEEcc----CCCeEEEEeC-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--
Q 012994 110 GAVRGLTVST----DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-- 182 (452)
Q Consensus 110 ~~v~~l~~~~----~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 182 (452)
..+.+++|+| +|++|++++. +++|.+||..+++.+........... ...+.....+..+.+++++..++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~-~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD-TQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS-SCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC-ccccccCCceEEEEECCCCCEEEEEECC
Confidence 6689999999 9999999884 89999999987754433221100000 00011233677899999877665543
Q ss_pred -CeEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec---ccceEE-Ecc
Q 012994 183 -AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT---KSNSIS-WNP 255 (452)
Q Consensus 183 -~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~~~-~~~ 255 (452)
+.|.+||+.+.+.+. .+. +...+.++.|+|++..+++++..+++|.+||+.+++....+.... ...... ++|
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p 379 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP 379 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEET
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCC
Confidence 679999998876554 333 456688899999995555666678999999999998877776422 112333 467
Q ss_pred CCCceEEeec-CCCeEEEEeCCCc------cccceeeeCcccceEEEEEcCCCCEEEEEe-------CCCeEEEEECCCC
Q 012994 256 MEPMNFTAAN-EDCNCYSYDSRKL------DEAKCVHMGHESAVMDIDYSPTGREFVTGS-------YDRTIRIFQYNGG 321 (452)
Q Consensus 256 ~~~~~~~~~~-~~~~i~~~d~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-------~dg~i~iwd~~~~ 321 (452)
++..+++++. .++.|.+||..+. .+....+.+|...+..++++|+|++|++++ .+++|.+||+.++
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 7667777775 6899999999872 334455667878888999999999999987 3779999999998
Q ss_pred cee-eeec-------cCCcCcEEEEEEcCCCCEEEEee-----CCCcEEEeecccccccccCCh
Q 012994 322 RSR-EIYH-------TKRMQRVFCVKFSCDASYVISGS-----DDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 322 ~~~-~~~~-------~~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~ 372 (452)
+.. ..+. ..+...+..+.|+|+|+.|+.+. .|+.|.|||..+++++.++..
T Consensus 460 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 460 DAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp TSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecC
Confidence 766 3331 23347899999999999988652 479999999999999887763
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.1e-29 Score=229.70 Aligned_cols=312 Identities=8% Similarity=0.019 Sum_probs=234.7
Q ss_pred ccccEEEEE---eCCCCcceEEE--------------eeCCC--cEEEEeCCCC--ceEEEeecCCCCeeEEEEccCCCe
Q 012994 65 HRDGISCMA---KNPNYLKGFFS--------------GSMDG--DIRLWDIANR--RTVCQYSGHQGAVRGLTVSTDGRI 123 (452)
Q Consensus 65 h~~~V~~~~---~~~~~~~~l~t--------------g~~dg--~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~ 123 (452)
....+..++ |+|++ ..++. ++.++ .|..||..++ +.+..+..+ ..+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEK-EIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTTC-CEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCCC-cEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeE
Confidence 445677778 88876 44432 33344 4444454334 556666644 45679999998788
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceeccc
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQW 201 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~ 201 (452)
+++++.|+.|++||+.+++........ ....+...+.++++++++.++++++ +.+.+||+.+++.+..+..
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~ 209 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPE-------KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL 209 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCH-------HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcc-------cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC
Confidence 888888999999999877543211100 0112344678899999999998886 6899999999999998888
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeec-------CCCeEEEEe
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAAN-------EDCNCYSYD 274 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~d 274 (452)
|...+.+++|+|++..++++++.|+.|++||+++++....+.....+..++|+|++..+++++. .++.+++||
T Consensus 210 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 210 TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 8899999999999865556777899999999998877776666667889999999987766664 578999999
Q ss_pred CCCccccceeeeCcccceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC-
Q 012994 275 SRKLDEAKCVHMGHESAVMDIDYSPTGRE-FVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD- 352 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~- 352 (452)
+.+....... .|...+.+++|+|+++. +++++.|+.|++||+.+++....+.. ...+.+++|+|++++|++++.
T Consensus 290 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 290 MDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp TTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECC
T ss_pred CCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecC
Confidence 9876443322 55668899999999975 46668899999999999887766643 367999999999999888776
Q ss_pred --------------CCcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 353 --------------DTNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 353 --------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
||.|++||+.+++.+..+. ....+..++++|+-..++
T Consensus 366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE------------------AGNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE------------------CSSSEEEEEECTTSCEEE
T ss_pred CCccccccccccccceEEEEEECCCCcEEEEec------------------CCCCCceEEEcCCCCEEE
Confidence 5799999999988776553 233457788888765444
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.97 E-value=1e-27 Score=226.36 Aligned_cols=278 Identities=14% Similarity=0.111 Sum_probs=223.5
Q ss_pred EeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC--CCCCCCCCCCCC
Q 012994 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV--PVATLTDSDDST 150 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~--~~~~~~~~~~~~ 150 (452)
+|+|++ .++++++.|++|.+||..+++.+..+..+.. +.+++|+|+|++|++++.|++|.+||+ .++
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--------- 212 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP--------- 212 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---------
T ss_pred ccCCCC-EEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCC---------
Confidence 488987 8899999999999999999999999884333 899999999999999999999999999 444
Q ss_pred CCCCCCeeEEEecCCeeeeeecC----CCCeEEEeC---CeEEEEeCCCCCcceecccC-----------CCceEEEEEC
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQW----EGDLFATAG---AQVDIWNHNRSQPINSFQWG-----------TDTVISVRFN 212 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~ 212 (452)
..............++++| +|+++++++ +.|.+||..+++++..+..+ ...+.++.++
T Consensus 213 ----~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 213 ----TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp ----EEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred ----cEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC
Confidence 2333444556678999999 999888775 68999999999988877642 2368899999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCce--EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---C
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPAR--KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---G 287 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~ 287 (452)
|+++.++++...++.|.+||+.+.+.+. .+........+.|+|+++++++++..++.|.+||..+......... .
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 9888888899999999999998876655 4444556778999999999888988999999999998754443332 2
Q ss_pred cccceEEEEEcCC-CCEEEEEe-CCCeEEEEECCC-------CceeeeeccCCcCcEEEEEEcCCCCEEEEee-------
Q 012994 288 HESAVMDIDYSPT-GREFVTGS-YDRTIRIFQYNG-------GRSREIYHTKRMQRVFCVKFSCDASYVISGS------- 351 (452)
Q Consensus 288 ~~~~v~~~~~s~~-g~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------- 351 (452)
|.+....+ ++|+ |..++++. .|++|.+||+.+ .+.+..+..+. ..+..++|+|++++|++++
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCCCCCcEEEecCCCCCcc
Confidence 54433333 4776 66677775 589999999998 67777765443 5678899999999999987
Q ss_pred CCCcEEEeeccccccc
Q 012994 352 DDTNLRLWKAKASEQL 367 (452)
Q Consensus 352 ~dg~i~iw~~~~~~~~ 367 (452)
.+++|.+||+.+++..
T Consensus 447 ~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAK 462 (543)
T ss_dssp HHTCEEEEETTCTTSC
T ss_pred cCceEEEEECCCCCCC
Confidence 2779999999998876
No 127
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-29 Score=245.62 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=196.3
Q ss_pred CCCchhhhhhhHhhhhHHHhhhhh--ccccccccccccccEEEEEeCCC--CcceEEEeeCCCcEEEEeCCCCc--eEEE
Q 012994 31 NLRPQEKAVEYVRALTAAKLEKIF--ARPFIGALDGHRDGISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRR--TVCQ 104 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~~~~~~~--~~~~l~tg~~dg~i~iwd~~~~~--~~~~ 104 (452)
.++|.............+.+|+.. ....+..+.+|.+.|++++|+|+ + ++|++|+.||.|++||+.+++ .+..
T Consensus 16 ~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 94 (753)
T 3jro_A 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENGRWSQIAV 94 (753)
T ss_dssp CCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCCccccccc
Confidence 455555555555556677889886 56778899999999999999988 7 999999999999999999886 6777
Q ss_pred eecCCCCeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 105 YSGHQGAVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 105 ~~~h~~~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
+.+|...|++++|+|+ +++|++|+.||.|++||+..+..
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~--------------------------------------- 135 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT--------------------------------------- 135 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------------------------------------
T ss_pred ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------------------------------------
Confidence 8899999999999998 99999999999999999976521
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCC------------CCcEEEEEecCCeEEEEEccCCCCceEEE-----ee
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA------------EPNVLATTASDRSITLYDLRMSSPARKVI-----MR 245 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~ 245 (452)
.....+..|...|.+++|+|. ++.++++|+.||.|++||+++........ +.
T Consensus 136 -----------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~ 204 (753)
T 3jro_A 136 -----------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS 204 (753)
T ss_dssp -----------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred -----------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCC
Confidence 112233456788899999984 24789999999999999999875443322 24
Q ss_pred cccceEEEccCC--CceEEeecCCCeEEEEeCCCccc----cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 246 TKSNSISWNPME--PMNFTAANEDCNCYSYDSRKLDE----AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 246 ~~~~~~~~~~~~--~~~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
..+.+++|+|++ ...+++++.|+.+++||.+.... .......|...|++++|+|+|++|++|+.||.|++||+.
T Consensus 205 ~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 205 DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 567899999996 67799999999999999987532 222233588899999999999999999999999999998
Q ss_pred CCc
Q 012994 320 GGR 322 (452)
Q Consensus 320 ~~~ 322 (452)
.+.
T Consensus 285 ~~~ 287 (753)
T 3jro_A 285 LEG 287 (753)
T ss_dssp SSS
T ss_pred CCC
Confidence 543
No 128
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=1.4e-28 Score=224.30 Aligned_cols=251 Identities=8% Similarity=0.059 Sum_probs=169.3
Q ss_pred hhhHhhhhHHHhhhhhccc-----cccccccccccEEEEEeCC--------CCcceEEEeeCCCcEEEEeCCCCceEEEe
Q 012994 39 VEYVRALTAAKLEKIFARP-----FIGALDGHRDGISCMAKNP--------NYLKGFFSGSMDGDIRLWDIANRRTVCQY 105 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~-----~~~~l~~h~~~V~~~~~~~--------~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 105 (452)
++.......+++|+..... .+..+.||.+.|++++|+| ++ ++||+|+.|++|+|||+.++..+..+
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCCCceeeee
Confidence 3344445667888875543 4567899999999999998 66 89999999999999999988888888
Q ss_pred ecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 106 SGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
.+|...|.+++|+|++ .+|++++.||+|++||+.++.............. ..+.....
T Consensus 183 ~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~--------~~~~s~~~------------- 241 (393)
T 4gq1_A 183 YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN--------PWLLTLNT------------- 241 (393)
T ss_dssp EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC--------CCSEEEES-------------
T ss_pred cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc--------ceEEeccc-------------
Confidence 8899999999999977 4899999999999999987754332211111000 00000000
Q ss_pred EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-------------------
Q 012994 185 VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR------------------- 245 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------- 245 (452)
..........+|...+.++.|.+.++..+++++.|+.+++||+........+...
T Consensus 242 ------~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 242 ------LPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp ------GGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSS
T ss_pred ------ccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccccc
Confidence 0111112234577889999987434478999999999999999876654433211
Q ss_pred cccceEEEcc-CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 246 TKSNSISWNP-MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.......+.| .+..++++++.|+.|++||......... ..+|..+|.+++|||||++||+++.+| +.+|.+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~-~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI-PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE-EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE-ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 1112233444 4455677788999999999987655443 447788999999999999999998766 6666653
No 129
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-27 Score=205.50 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=156.3
Q ss_pred HHHhhhhhcc---cccccccccccc-------------------------EEEEEeCCC----CcceEEEeeC-------
Q 012994 47 AAKLEKIFAR---PFIGALDGHRDG-------------------------ISCMAKNPN----YLKGFFSGSM------- 87 (452)
Q Consensus 47 ~~~~~~~~~~---~~~~~l~~h~~~-------------------------V~~~~~~~~----~~~~l~tg~~------- 87 (452)
.+.+|+..+. ..++++.+|..+ |.+++|+|+ + +.+++++.
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l 142 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEK-QVLLKSGNIKAVLGL 142 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CC-EEEEEEEEEEEEEEE
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccc-cEEEeCCCeEEEEec
Confidence 4568888776 677777777764 555566666 5 56666543
Q ss_pred -------------CCcEEEEeC-CCCceEEEeecCCCCeeEEEEcc---CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 88 -------------DGDIRLWDI-ANRRTVCQYSGHQGAVRGLTVST---DGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 88 -------------dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~---~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
|+.|++|++ .+++.+..+.+|...+..++|++ ++.+|++++.|++|+|||+.+++.+..+...
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~ 222 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID 222 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC
Confidence 888999998 45788888888999999999998 7789999999999999999988654433211
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEE------------eC--CeEEEEeCCCCCcceec-----ccCCCceEEEEE
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFAT------------AG--AQVDIWNHNRSQPINSF-----QWGTDTVISVRF 211 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~ 211 (452)
.. ....+.+++|+|+|.++++ ++ +++++||..+++.+..+ .+|...+.+..+
T Consensus 223 ~~---------~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 223 DS---------YQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp C------------CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE
T ss_pred Cc---------ceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc
Confidence 10 1135666788998887753 22 46999999998876554 245545544444
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccc
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESA 291 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 291 (452)
+ + .++++++.||+|+|||+.+++.+..+ .+|...
T Consensus 294 s--g-~~lASgS~DgTIkIWDl~tGk~l~tL-------------------------------------------~gH~~~ 327 (356)
T 2w18_A 294 K--D-HCAAAILTSGTIAIWDLLLGQCTALL-------------------------------------------PPVSDQ 327 (356)
T ss_dssp E--T-TEEEEEETTSCEEEEETTTCSEEEEE-------------------------------------------CCC--C
T ss_pred C--C-CEEEEEcCCCcEEEEECCCCcEEEEe-------------------------------------------cCCCCC
Confidence 4 3 67899999999999999888766544 256655
Q ss_pred eE-EEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 292 VM-DIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 292 v~-~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
+. .++|||||++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 44 6899999999999999999999996
No 130
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.96 E-value=1.2e-26 Score=207.57 Aligned_cols=278 Identities=11% Similarity=0.067 Sum_probs=209.5
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCC--CeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG--AVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (452)
.+|++++.++.|.+||+.+++.+..+..... .+.+++|+|++++++ +++.++.|.+||+.+++.......... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---E 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT---T
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc---c
Confidence 5789999999999999999988887763322 588999999998664 555678999999987643221110000 0
Q ss_pred eeEEEecCCeeeeeecCCCCeEEEeC--------------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 157 LAVYVWKNSFWAVDHQWEGDLFATAG--------------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
.....+..+++++++..+++++ +.|.+||+.+++.+..+.. ...+.+++|+|++ +.++++
T Consensus 79 ----~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg-~~l~~~ 152 (337)
T 1pby_B 79 ----ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDG-SKLYGL 152 (337)
T ss_dssp ----EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTS-SCEEEE
T ss_pred ----cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCC-CEEEEe
Confidence 0011566889999998777763 7899999999887777665 4567889999998 455555
Q ss_pred ecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC-----------------------eEEEEeCCCcc
Q 012994 223 ASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC-----------------------NCYSYDSRKLD 279 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~i~~~d~~~~~ 279 (452)
++.|.+||+.+++....+........+.|+|++..+++++..++ .+.+||..+..
T Consensus 153 --~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 230 (337)
T 1pby_B 153 --GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp --SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred --CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCC
Confidence 68899999998876665554432345578898887766665554 46899988765
Q ss_pred ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 280 EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 280 ~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
........+...+.+++|+|+|++|+++ ++.|.+||+.+++....+..+ ..+.+++|+|+|++|++++.++.|.+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred ceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--CceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 5433344555678899999999999988 789999999998877666544 457899999999999999999999999
Q ss_pred ecccccccccCCh
Q 012994 360 KAKASEQLGVLHP 372 (452)
Q Consensus 360 ~~~~~~~~~~~~~ 372 (452)
|+.+++.+..+..
T Consensus 307 d~~~~~~~~~~~~ 319 (337)
T 1pby_B 307 DAETLEKKGQVDL 319 (337)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECcCCcEEEEEEc
Confidence 9999988776643
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.96 E-value=1.3e-25 Score=200.36 Aligned_cols=278 Identities=10% Similarity=0.063 Sum_probs=205.1
Q ss_pred EeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCCCCCCCCCC
Q 012994 73 AKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDSTD 151 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~ 151 (452)
.|.+++...+++++.++.|.+||..+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~-------- 74 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP-------- 74 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------
Confidence 4566654668888999999999999999888887666677 9999999997776665 88999999987632
Q ss_pred CCCCCeeEEEecCCeee-eeecCCCCeEEEeC-C----eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC
Q 012994 152 NSSEPLAVYVWKNSFWA-VDHQWEGDLFATAG-A----QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD 225 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 225 (452)
............. ++++|++.++++.. + .|.+||+.+++.+..+..+ ....+++|+|++..+++++..+
T Consensus 75 ----~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~ 149 (331)
T 3u4y_A 75 ----KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSS 149 (331)
T ss_dssp ----EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETT
T ss_pred ----eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCC
Confidence 1233333344445 99999999887654 3 7999999999888777653 4568999999996666676777
Q ss_pred Ce-EEEEEccCCCCceEE-----EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc---cceeeeCcccceEEEE
Q 012994 226 RS-ITLYDLRMSSPARKV-----IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE---AKCVHMGHESAVMDID 296 (452)
Q Consensus 226 g~-i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~~~v~~~~ 296 (452)
+. |.+|++......... ........++|+|++..+++++..++.+.+||..+... .... .....+..++
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~~~ 227 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAV--GTNNLPGTIV 227 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEE--ECSSCCCCEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeec--cCCCCCceEE
Confidence 88 999999865443222 22345678999999998889998999999999987654 3222 2336678899
Q ss_pred EcCCCCEEEEEe-CCCeEEEEECCCCce--eeeeccC------CcCcEEEEEEcCCCCEEEEee-CCCcEEEeecccccc
Q 012994 297 YSPTGREFVTGS-YDRTIRIFQYNGGRS--REIYHTK------RMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQ 366 (452)
Q Consensus 297 ~s~~g~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~------~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~ 366 (452)
|+|+|++|++++ .++.|.+||+.+++. +..+... .......++|+|||++|++++ .++.|.+||+.....
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 999999776554 578899999998876 2222111 112235689999999886554 567999999976543
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=9.5e-27 Score=213.44 Aligned_cols=276 Identities=10% Similarity=0.028 Sum_probs=208.1
Q ss_pred HHHhhhh--hccccc--cccccccccEEEEEeCCC--------------CcceEEEeeCC------CcEEEEeCCCCceE
Q 012994 47 AAKLEKI--FARPFI--GALDGHRDGISCMAKNPN--------------YLKGFFSGSMD------GDIRLWDIANRRTV 102 (452)
Q Consensus 47 ~~~~~~~--~~~~~~--~~l~~h~~~V~~~~~~~~--------------~~~~l~tg~~d------g~i~iwd~~~~~~~ 102 (452)
.+++|++ .++..+ ..+.+|...+..+++++. + ..++.++.+ +.|++||+.. ...
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~-~~l~~~s~~~~~~~~~~i~i~d~~g-~~~ 171 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR-TRIAYVVQTNGGQFPYELRVSDYDG-YNQ 171 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT-CEEEEEEECSSSSCCEEEEEEETTS-CSC
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC-CEEEEEEecCCCCccceEEEEcCCC-CCC
Confidence 4688888 777766 558899998888887751 3 455555543 7999999974 456
Q ss_pred EEeecCCCCeeEEEEccCCCeEEEEeCCC---cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 103 CQYSGHQGAVRGLTVSTDGRILVSCGTDC---TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 103 ~~~~~h~~~v~~l~~~~~~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
..+.+|...|.+++|+|+|++|++++.|+ .|++||+.+++ ......+...+.+++|+|+|..++
T Consensus 172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-------------~~~l~~~~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-------------VRQVASFPRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-------------EEEEECCSSCEEEEEECTTSSEEE
T ss_pred EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc-------------EEEeecCCCcccCEEEcCCCCEEE
Confidence 67778999999999999999999999885 99999998763 233444556788999999999777
Q ss_pred -EeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec-CC--eEEEEEccCCCCceEEEeecccceE
Q 012994 180 -TAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DR--SITLYDLRMSSPARKVIMRTKSNSI 251 (452)
Q Consensus 180 -~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~ 251 (452)
+++ ..|.+||+.+++. ..+..+...+.+++|+|++ ..|++++. ++ .|.+||+.++..............+
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~ 316 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 316 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEE
T ss_pred EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCe
Confidence 442 2499999998775 5666778889999999998 55555554 55 6777788776643322233456689
Q ss_pred EEccCCCceEEeecC--CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeee
Q 012994 252 SWNPMEPMNFTAANE--DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREI 326 (452)
Q Consensus 252 ~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~ 326 (452)
+|+|++..+++++.. +..+++||..+.... .+..+. .+.+++|+|+|++|++++.++ .|++||+..+.. ..
T Consensus 317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~--~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~-~~ 392 (415)
T 2hqs_A 317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ--VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR 392 (415)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCEE--ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE
T ss_pred EECCCCCEEEEEECcCCceEEEEEECCCCCEE--EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcE-EE
Confidence 999999987777765 358999999875442 233443 899999999999999888777 799999985543 33
Q ss_pred eccCCcCcEEEEEEcCCC
Q 012994 327 YHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 327 ~~~~~~~~v~~~~~s~~~ 344 (452)
+ ..+.+.|.+++|+|..
T Consensus 393 l-~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 393 L-PATDGQVKFPAWSPYL 409 (415)
T ss_dssp C-CCSSSEEEEEEECCCC
T ss_pred e-eCCCCCCcCCcccccc
Confidence 3 3344789999999964
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=6.3e-26 Score=224.73 Aligned_cols=285 Identities=8% Similarity=0.020 Sum_probs=207.3
Q ss_pred cccEEEEEeCCCCcceEEEeeC-CC-----cEEEEeCCCCceEEEeecCCC------------------------CeeEE
Q 012994 66 RDGISCMAKNPNYLKGFFSGSM-DG-----DIRLWDIANRRTVCQYSGHQG------------------------AVRGL 115 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~-dg-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~l 115 (452)
...|.+++|+||| ++|++++. |+ .|++||+.+++....+..+.. .|.++
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 5579999999999 99999888 88 899999999987766655433 38899
Q ss_pred EEccCCCeEEEEeCCCcEEEEeCCCC---CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCC
Q 012994 116 TVSTDGRILVSCGTDCTVKLWNVPVA---TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHN 191 (452)
Q Consensus 116 ~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~ 191 (452)
+|+|||++|++++. +.|.+||+.++ .... .......+..+.|+|+|+.+++.. +.|.+||+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~ 180 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------LTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA 180 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------CCCSSSCEEEEEECTTSSEEEEEETTEEEEEETT
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------cccCCcccccccCCCCCCEEEEEeCCcEEEEecC
Confidence 99999999999886 89999999876 3211 112235678899999999887765 689999999
Q ss_pred CCCcceecccCCCc----------------eEEEEECCCCCcEEEEEecCC-----------------------------
Q 012994 192 RSQPINSFQWGTDT----------------VISVRFNPAEPNVLATTASDR----------------------------- 226 (452)
Q Consensus 192 ~~~~~~~~~~~~~~----------------i~~~~~~~~~~~~l~~~~~dg----------------------------- 226 (452)
+++.......+... +.++.|+|++ +.|++++.|+
T Consensus 181 ~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~ 259 (741)
T 2ecf_A 181 SGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA 259 (741)
T ss_dssp TTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred CCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence 88766554443332 4779999999 5666666554
Q ss_pred ----eEEEEEccC-CCCceEEE---eecccceEEEccCCCceEEeec----CCCeEEEEeCCCccccceeeeCccc----
Q 012994 227 ----SITLYDLRM-SSPARKVI---MRTKSNSISWNPMEPMNFTAAN----EDCNCYSYDSRKLDEAKCVHMGHES---- 290 (452)
Q Consensus 227 ----~i~i~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~---- 290 (452)
.|.+||+.+ ++...... ....+..++| |++..++++.. .+..+++||..+...... ...+..
T Consensus 260 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~ 337 (741)
T 2ecf_A 260 NVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVL-AHETSPTWVP 337 (741)
T ss_dssp CCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEE-EEEECSSCCC
T ss_pred CCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEE-EEcCCCCcCC
Confidence 788999987 66433221 2234578999 99998776654 356899999987654332 223322
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeeeccCCcCcEEEE-EEcCCCCEEE-EeeCCC--cEEEeeccc-c
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCV-KFSCDASYVI-SGSDDT--NLRLWKAKA-S 364 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~-s~~~dg--~i~iw~~~~-~ 364 (452)
.+..++|+|||+++++++.||.++||.+. .+. ...+.. +...+..+ .|+|+++.|+ +++.++ .++||++.. +
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~-~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g 415 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTH-GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQG 415 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCC-SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTC
T ss_pred cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeee-cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCC
Confidence 45689999999999999999988888765 333 333433 34668777 5999999775 455555 899999864 4
Q ss_pred cccccC
Q 012994 365 EQLGVL 370 (452)
Q Consensus 365 ~~~~~~ 370 (452)
.....+
T Consensus 416 ~~~~~l 421 (741)
T 2ecf_A 416 GQPQRL 421 (741)
T ss_dssp CCCEEC
T ss_pred CCeeec
Confidence 434333
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=1e-24 Score=195.51 Aligned_cols=267 Identities=13% Similarity=0.202 Sum_probs=187.5
Q ss_pred ceEEEeeCCCcEEEEeCC-CC--ceEEEeecCCCCeeEEEEccCCCeEEEEeCC-CcEEEEeCC--CCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIA-NR--RTVCQYSGHQGAVRGLTVSTDGRILVSCGTD-CTVKLWNVP--VATLTDSDDSTDNS 153 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~-~~--~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d-g~v~iwd~~--~~~~~~~~~~~~~~ 153 (452)
.++++++.|+.|++||+. ++ +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++. ++..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~---------- 74 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL---------- 74 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----------
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce----------
Confidence 344555789999999985 33 233333 477889999999999999988886 999999997 3321
Q ss_pred CCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCC---CCCcceecccCCCceEEEEECCCCCcEEEEEe-cCC
Q 012994 154 SEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHN---RSQPINSFQWGTDTVISVRFNPAEPNVLATTA-SDR 226 (452)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg 226 (452)
...........+..+++++++..+++++ +.+.+||+. ..+....+.. ...+.+++|+|++. .+++++ .++
T Consensus 75 -~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-~l~~~~~~~~ 151 (343)
T 1ri6_A 75 -TFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNR-TLWVPALKQD 151 (343)
T ss_dssp -EEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSS-EEEEEEGGGT
T ss_pred -eeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCC-EEEEecCCCC
Confidence 1222333345778899999999775553 579999994 3344444443 34588999999984 445554 899
Q ss_pred eEEEEEccC-CCCceE----EEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-c--ceeee----C--ccc
Q 012994 227 SITLYDLRM-SSPARK----VIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE-A--KCVHM----G--HES 290 (452)
Q Consensus 227 ~i~i~d~~~-~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~--~~~~~----~--~~~ 290 (452)
.|.+||+.+ +..... ... ...+..++|+|++..+++++..++.+.+|+...... . ..... + ...
T Consensus 152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 152 RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 999999987 433221 111 234567999999998888888999999999864211 1 11111 1 123
Q ss_pred ceEEEEEcCCCCEEEE-EeCCCeEEEEECC--CCc--eeeeeccCCcCcEEEEEEcCCCCEEEEee-CCCcEEEeecc
Q 012994 291 AVMDIDYSPTGREFVT-GSYDRTIRIFQYN--GGR--SREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAK 362 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s-~~~dg~i~iwd~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 362 (452)
.+..++|+|+|++|++ +..++.|.+||+. ++. ....+... ..+.+++|+|+|++|++++ .++.|.+|++.
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5668999999988774 4478999999998 332 23233332 3488999999999888877 68999999554
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=2.1e-25 Score=195.46 Aligned_cols=256 Identities=12% Similarity=0.108 Sum_probs=188.4
Q ss_pred EeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC-CCCCCCCCCCCCCCCCeeEEEe
Q 012994 84 SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV-ATLTDSDDSTDNSSEPLAVYVW 162 (452)
Q Consensus 84 tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (452)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|.+||+.+ +......... .
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~-----------~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF-----------A 83 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT-----------C
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc-----------c
Confidence 4567899999999988766 4555889999999999999999987 78999999987 6433221110 1
Q ss_pred cCCeeeeeecCCCCeEEEeC----Ce--EEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC
Q 012994 163 KNSFWAVDHQWEGDLFATAG----AQ--VDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~----~~--i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 236 (452)
...+.++.|+|++..+++.. +. +..++..++. ...+..+ ..+..++|+|++..++++++.++.+.+|++...
T Consensus 84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 24567899999999988876 23 5555555554 3344333 348899999999655668889999999997543
Q ss_pred C-CceEE-EeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC----
Q 012994 237 S-PARKV-IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD---- 310 (452)
Q Consensus 237 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d---- 310 (452)
. ....+ .....+..+.|+|++..+++++..++.+.+|+..........+..|...+.+++|+|+|++|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 2 22222 23345678999999998888877788888888764334445555677889999999999999888766
Q ss_pred -------CeEEEEECCCCceeeeec-cCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 311 -------RTIRIFQYNGGRSREIYH-TKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 311 -------g~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
+.|++||+.+++...... ..+...+.+++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999999887644432 23446789999999999998877653
No 136
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=6.9e-24 Score=190.91 Aligned_cols=279 Identities=10% Similarity=0.047 Sum_probs=209.4
Q ss_pred ccccEEEEEeCCCCcceEEEeeC-------CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE-EeCCCcEEEE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSM-------DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS-CGTDCTVKLW 136 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~-------dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~v~iw 136 (452)
....+..++|+|++ +++++++. ++.|.+||..+++.+..+.. ...+.+++|+|++++++. ...++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQE-NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTT-TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCC-CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 45678999999998 77776663 56899999999998888764 445789999999996554 4557999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
|..+++.............. .........+.+++++..+++++ +.|.+||..+++.+..+..+...+.+++|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTE---EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCS---SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred eCCCCeeEEEEecCCCcccc---ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99877543222111000000 00001256789999998666553 469999999999888887556668899999
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEEee-----cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVIMR-----TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG 287 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 287 (452)
|++ +.+++++.++.|.+||+.+++....+... .....++|+|++..++++...++.+.+||..+.........+
T Consensus 194 ~dg-~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 194 SEG-KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp TTT-TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECS
T ss_pred CCC-CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 998 67778888999999999988877776652 234568999999988888888899999999876654444332
Q ss_pred cccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 288 HESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
. ...++|+|+|+++++++ .++.|.+||+.+++....+... ..+.+++|+|||++|+.+..++
T Consensus 273 ~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--SEEEEEEECTTSCEEEEEEECC
T ss_pred C---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--CCCCeEEEcCCCCEEEEEEccc
Confidence 2 25699999999666555 6899999999999887776554 4689999999999877766553
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=2.5e-25 Score=219.90 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=199.6
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC---CeeEEEEccCCCeEEEEeCC---------CcEEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG---AVRGLTVSTDGRILVSCGTD---------CTVKL 135 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~d---------g~v~i 135 (452)
.+.+++|+|+| +++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spdg-~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISDT-EFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSSS-CBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCCC-cEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 46789999999 77766 7899999999999988877777765 49999999999999999774 77889
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCce--------
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTV-------- 206 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i-------- 206 (452)
||+.++..... .... .....+..++|+|+|+.++... ++|.+||+.+++.......+...+
T Consensus 96 ~d~~~~~~~~l-~~~~---------~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 96 SKIPHGDPQSL-DPPE---------VSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp EESSSCCCEEC-CCTT---------CCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCH
T ss_pred EECCCCceEec-cCCc---------cccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccce
Confidence 99988754111 0000 1122367889999999888776 689999999988766555433333
Q ss_pred ----------EEEEECCCCCcEEEEEecCC----------------------------------eEEEEEccCCCCceEE
Q 012994 207 ----------ISVRFNPAEPNVLATTASDR----------------------------------SITLYDLRMSSPARKV 242 (452)
Q Consensus 207 ----------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~ 242 (452)
.+++|+|++ +.|++++.|+ .|.+||+.++.....+
T Consensus 166 v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 789999999 5666665442 7999999887754444
Q ss_pred Ee-------ecccceEEEccCCCceEEeec---CCCeEEEEeCCCccccceeeeCcccceE----EEEEcCCCCEEEE--
Q 012994 243 IM-------RTKSNSISWNPMEPMNFTAAN---EDCNCYSYDSRKLDEAKCVHMGHESAVM----DIDYSPTGREFVT-- 306 (452)
Q Consensus 243 ~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~v~----~~~~s~~g~~l~s-- 306 (452)
.. ...+..+.|+|++..++.... .+..+++||..+..........+...+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 32 234567999999986544433 3467999998876543333233334443 7899999997775
Q ss_pred EeCCC------eEEEEE-CCCCce--eeeeccCCcCcEEE-EEEcCCCCEEEEeeCC---CcEEEeecccc
Q 012994 307 GSYDR------TIRIFQ-YNGGRS--REIYHTKRMQRVFC-VKFSCDASYVISGSDD---TNLRLWKAKAS 364 (452)
Q Consensus 307 ~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 364 (452)
+..++ .|++|| ..++.. ...+..++ ..+.. ++|+|||++|+..+.+ +.+++|++...
T Consensus 325 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 325 AIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred ecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 45667 577777 344441 33333333 34544 6999999998765554 78999998643
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.94 E-value=2e-24 Score=212.79 Aligned_cols=289 Identities=11% Similarity=0.061 Sum_probs=201.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC-----C
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV-----A 141 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~-----~ 141 (452)
..|.+++|+|++ .++++ .++.|++||+.+++... +..+...+.+++|+|||++|+++ .|+.|.+||+.+ +
T Consensus 82 ~~v~~~~~spd~-~~~~~--~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGRG-LVVLF--TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTTT-EEEEE--ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCCC-eEEEE--ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 579999999994 55555 35999999998886644 45577889999999999999985 679999999987 5
Q ss_pred CCCCCCCCCCCCC--CCeeEEEecCCeeeeeecCCCCeEEEeC-----------------------------------Ce
Q 012994 142 TLTDSDDSTDNSS--EPLAVYVWKNSFWAVDHQWEGDLFATAG-----------------------------------AQ 184 (452)
Q Consensus 142 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~ 184 (452)
............. ...........+..+.|+|+|+.+++.. ..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 4332211110000 0000000012257899999999988874 35
Q ss_pred EEEEeCCCCCcceecc--cCCCceEEEEECCCCCcEEEEEecCC-----eEEEEEccCCCCceEEEe-ec-----ccceE
Q 012994 185 VDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPNVLATTASDR-----SITLYDLRMSSPARKVIM-RT-----KSNSI 251 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~-~~-----~~~~~ 251 (452)
|.+||+.+++...... .+...+.+++|+|++ +.|++++.++ .|.+||+.++.....+.. .. ....+
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL 315 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence 9999999887544432 356789999999998 6677766665 899999988844433332 21 12568
Q ss_pred EEcc--CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE-EEEcCCCCEEEEEeC-CC----eEEEEECCCCce
Q 012994 252 SWNP--MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD-IDYSPTGREFVTGSY-DR----TIRIFQYNGGRS 323 (452)
Q Consensus 252 ~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~-dg----~i~iwd~~~~~~ 323 (452)
.|+| ++. +++++..++.+.+|+..........+..+...+.. ++|+|+|+.|+.++. ++ .|..||+.++..
T Consensus 316 ~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~ 394 (706)
T 2z3z_A 316 TFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT 394 (706)
T ss_dssp EECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC
T ss_pred eeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc
Confidence 9999 876 56777778877777765323333444566667776 799999998766554 44 677788877663
Q ss_pred eeeeccCCcCcEEEEEEcCCCCEEEEeeCC----CcEEEeeccccc
Q 012994 324 REIYHTKRMQRVFCVKFSCDASYVISGSDD----TNLRLWKAKASE 365 (452)
Q Consensus 324 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 365 (452)
.... +...+.+++|+|||++|+..+.+ +.|++||+.+++
T Consensus 395 ~~l~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 395 KDLT---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EESC---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred eecc---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 3222 33568999999999988876443 569999998876
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=2.6e-25 Score=220.24 Aligned_cols=323 Identities=11% Similarity=0.048 Sum_probs=225.6
Q ss_pred CCCCCchhhhhhhHhh-hh-----HHHhhhhhccccccccccccc------------------------cEEEEEeCCCC
Q 012994 29 DPNLRPQEKAVEYVRA-LT-----AAKLEKIFARPFIGALDGHRD------------------------GISCMAKNPNY 78 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~l~~h~~------------------------~V~~~~~~~~~ 78 (452)
.+.++|.+..+.+... .. .+.+|+..++.....+.+|.. .|.+++|+|||
T Consensus 41 ~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg 120 (741)
T 2ecf_A 41 KPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDA 120 (741)
T ss_dssp EEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTS
T ss_pred CceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCC
Confidence 4567777776666554 33 567777776666555555433 38999999999
Q ss_pred cceEEEeeCCCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 012994 79 LKGFFSGSMDGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP 156 (452)
Q Consensus 79 ~~~l~tg~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (452)
++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++. +.|.+||+.++.......... ..
T Consensus 121 -~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~---~~ 194 (741)
T 2ecf_A 121 -QRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGS---TT 194 (741)
T ss_dssp -SEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCC---SS
T ss_pred -CEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCc---cc
Confidence 88888886 999999998873 34556778889999999999999999874 699999998765432211110 00
Q ss_pred eeEEE--------ecCCeeeeeecCCCCeEEEeC--C---------------------------------eEEEEeCCC-
Q 012994 157 LAVYV--------WKNSFWAVDHQWEGDLFATAG--A---------------------------------QVDIWNHNR- 192 (452)
Q Consensus 157 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~---------------------------------~i~i~d~~~- 192 (452)
. ... ....+..+.|+|||+.+++.. + .|.+||+.+
T Consensus 195 ~-~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 195 I-GNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp E-EESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred e-eccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 000 011246789999999888763 2 688899988
Q ss_pred CCcceecc--cCCCceEEEEECCCCCcEEEEEe-----cCCeEEEEEccCCCCceEEEeec-----ccceEEEccCCCce
Q 012994 193 SQPINSFQ--WGTDTVISVRFNPAEPNVLATTA-----SDRSITLYDLRMSSPARKVIMRT-----KSNSISWNPMEPMN 260 (452)
Q Consensus 193 ~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 260 (452)
++...... .+...+..++| |++ +.|++++ .++.|.+||+.+++....+.... ....+.|+|++. +
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 350 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-I 350 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-E
T ss_pred CceEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-E
Confidence 77654433 36678999999 998 4555443 35689999999887666555443 335889999998 6
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcccceEEE-EEcCCCCEEEE-EeCCC--eEEEEECCC-CceeeeeccCCcCcE
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI-DYSPTGREFVT-GSYDR--TIRIFQYNG-GRSREIYHTKRMQRV 335 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~l~s-~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~v 335 (452)
+++++.++...+|....... ...+..+...+..+ .|+|+|+.|+. ++.++ .+++|++.. +.....+.. ...+
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~ 427 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGM 427 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSE
T ss_pred EEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCc
Confidence 77778888666665442222 44555677778887 59999987754 44455 899999864 443444433 3568
Q ss_pred EEEEEcCCCCEEEEeeCC----CcEEEeecccc
Q 012994 336 FCVKFSCDASYVISGSDD----TNLRLWKAKAS 364 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 364 (452)
..++|+|||++|+....+ +.+.+|+...+
T Consensus 428 ~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 428 HSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred eEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 899999999988865443 56889987543
No 140
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.93 E-value=4.2e-24 Score=191.94 Aligned_cols=274 Identities=8% Similarity=0.050 Sum_probs=190.4
Q ss_pred EEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCC-CCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCCCCCC
Q 012994 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
.+++++++ .++++++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++ ++..++.|.+||+.+++......
T Consensus 4 g~~~~~~~-~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCC-EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 45678887 899999999999999999999888877543 2578999999998665 55568999999998764322111
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--------------CeEEEEeCCCCCcc---eecccCCCceEEEEE
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------------AQVDIWNHNRSQPI---NSFQWGTDTVISVRF 211 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~i~i~d~~~~~~~---~~~~~~~~~i~~~~~ 211 (452)
...... .....+..++++|+|+.+++++ +.+.+||+.+++.. ..+. +...+.+++|
T Consensus 83 ~~~~~~------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (349)
T 1jmx_B 83 LSSVPG------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRA 155 (349)
T ss_dssp SCCSTT------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEE
T ss_pred cccccc------cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeE
Confidence 000000 0012367889999999888776 78999999885433 3333 3446888999
Q ss_pred CCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec-------------------------ccceEEEccCCCc-------
Q 012994 212 NPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT-------------------------KSNSISWNPMEPM------- 259 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~------- 259 (452)
+|++. ++ +++ +.|.+||+.+++....+.... ....+.+.+++..
T Consensus 156 s~dg~-l~-~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 156 ADDGS-LY-VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp CTTSC-EE-EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCCCc-EE-Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 99984 44 443 349999998887666554322 1122333333211
Q ss_pred ---eEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcE
Q 012994 260 ---NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 335 (452)
Q Consensus 260 ---~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 335 (452)
++......+.+..++. ..+...+.+++|+| +|++++++ ++.|.+||+.+++....+..+ ..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~~~ 297 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD--HTY 297 (349)
T ss_dssp EEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS--SCC
T ss_pred ceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC--CCc
Confidence 1112222333333333 23455688999999 99999988 889999999998877666544 357
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.+++|+|++++|++++.++.|.+||+.+++.+..+
T Consensus 298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred cceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 79999999998888888999999999998887655
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=2.1e-24 Score=213.29 Aligned_cols=333 Identities=11% Similarity=0.028 Sum_probs=222.5
Q ss_pred cCCCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccc---cEEEEEeCCCCcceEEEeeCC---------CcEEEE
Q 012994 27 NYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPNYLKGFFSGSMD---------GDIRLW 94 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~~l~tg~~d---------g~i~iw 94 (452)
.+.+.+.|..... +......+.+|+..++.....+.+|.. .|.+++|+||| ++|++++.+ +.|.+|
T Consensus 19 ~~~~~~spdg~~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 19 DPEAKWISDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCBSSSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEE
T ss_pred ccccEEcCCCcEE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEE
Confidence 4566777776633 223344677888888887777877775 49999999999 889888764 788899
Q ss_pred eCCCCceEEEee---cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe---------
Q 012994 95 DIANRRTVCQYS---GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW--------- 162 (452)
Q Consensus 95 d~~~~~~~~~~~---~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------- 162 (452)
|+.+++. ..+. +|...+..++|+|||++|++++. +.|.+||+.++.......... ........
T Consensus 97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~---~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGK---EGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCB---TTTEEEEECCHHHHHTT
T ss_pred ECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCC---CCceECcccceeEEEEe
Confidence 9998876 3333 44556899999999999999886 799999998764322111100 00000000
Q ss_pred cCCeeeeeecCCCCeEEEeC--C----------------------------------eEEEEeCCCCCcceecccC----
Q 012994 163 KNSFWAVDHQWEGDLFATAG--A----------------------------------QVDIWNHNRSQPINSFQWG---- 202 (452)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~----------------------------------~i~i~d~~~~~~~~~~~~~---- 202 (452)
...+..+.|+|+|+.+++.. + .+.+||+.+++....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 01336899999999888764 1 6899999988765555543
Q ss_pred --CCceEEEEECCCCCcEEEEEec----CCeEEEEEccCCCCceEEEee--ccc----ceEEEccCCCceEEe-ecCCC-
Q 012994 203 --TDTVISVRFNPAEPNVLATTAS----DRSITLYDLRMSSPARKVIMR--TKS----NSISWNPMEPMNFTA-ANEDC- 268 (452)
Q Consensus 203 --~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~-~~~~~- 268 (452)
...+..++|+|++ +++++... +..|.+||+.+++....+... ... ..+.|+|++..++++ +..++
T Consensus 252 ~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 252 MREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 5678999999998 56655543 357999999888765554332 222 378999999988776 66666
Q ss_pred -----eEEEEeCCCccc---cceeeeCcccceEE-EEEcCCCCEEEEEeCC---CeEEEEECCCCc--eeeeeccC--Cc
Q 012994 269 -----NCYSYDSRKLDE---AKCVHMGHESAVMD-IDYSPTGREFVTGSYD---RTIRIFQYNGGR--SREIYHTK--RM 332 (452)
Q Consensus 269 -----~i~~~d~~~~~~---~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~~--~~ 332 (452)
.+++||...... .... ..+...+.. ++|+|||+.|+..+.+ +.+++|++.... ....+... +.
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 409 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVEN 409 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSS
T ss_pred CcceeEEEEEeccCCCCccceeEe-ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCC
Confidence 677788322222 2222 222333444 6999999998766655 789999986532 22222221 34
Q ss_pred CcEEEEEEcCCCCEEEEeeC-CC--cEEEeecccccccc
Q 012994 333 QRVFCVKFSCDASYVISGSD-DT--NLRLWKAKASEQLG 368 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~~~~~ 368 (452)
..+..++|+|||++|+.... .+ ...+++..+++.+.
T Consensus 410 ~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~ 448 (723)
T 1xfd_A 410 CTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (723)
T ss_dssp CCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence 56889999999998876433 22 23445555554443
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=3e-25 Score=227.06 Aligned_cols=315 Identities=9% Similarity=0.052 Sum_probs=224.0
Q ss_pred CCCCCCchhhhhhhHhhh------hHHHhhhhhccccccccccccccE-------EEEEeCCCCcceEEEeeCC------
Q 012994 28 YDPNLRPQEKAVEYVRAL------TAAKLEKIFARPFIGALDGHRDGI-------SCMAKNPNYLKGFFSGSMD------ 88 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~h~~~V-------~~~~~~~~~~~~l~tg~~d------ 88 (452)
..+.++|.+..+++.... ..+.+|+...+. ...|.+|...+ .+++|+||| +++++++.+
T Consensus 56 ~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg-~ll~~~~~~~~~~~~ 133 (1045)
T 1k32_A 56 NNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDG-NLIISTDAMQPFSSM 133 (1045)
T ss_dssp EEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTC-CEEEEECTTSSSTTC
T ss_pred cCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCC-EEEEEECCcCCCccc
Confidence 456778888777665332 245566655544 56788999988 999999999 677777754
Q ss_pred CcEEEEeCCCCceE-------------------------------------------------EEeecCCCCeeEEEEcc
Q 012994 89 GDIRLWDIANRRTV-------------------------------------------------CQYSGHQGAVRGLTVST 119 (452)
Q Consensus 89 g~i~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~l~~~~ 119 (452)
..|.+|++.+++.. ..+.+|...+.++.|++
T Consensus 134 ~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~ 213 (1045)
T 1k32_A 134 TCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG 213 (1045)
T ss_dssp CEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET
T ss_pred ceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC
Confidence 35788887655422 12345777888889988
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCccee
Q 012994 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINS 198 (452)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~ 198 (452)
+ .++++++.||.+.||.+.... ...........+...+|+|+|..++.+. +.+.+|++... .+..
T Consensus 214 d-~l~~~~~~dg~~~l~~~~~~g------------~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~ 279 (1045)
T 1k32_A 214 H-RIYFITDIDGFGQIYSTDLDG------------KDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEK 279 (1045)
T ss_dssp T-EEEEEECTTSSCEEEEEETTS------------CSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEE
T ss_pred C-EEEEEEeccCceEEEEEeCCC------------CcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCce-Eeee
Confidence 7 666777888999999875321 0111111122355678999999776654 78999999443 3334
Q ss_pred ccc-----------CCCceEEEEEC-CCCCcEEEEEecCCeEEEEEccCCCCceEEEeec-ccceEEEccCCCceEEeec
Q 012994 199 FQW-----------GTDTVISVRFN-PAEPNVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAAN 265 (452)
Q Consensus 199 ~~~-----------~~~~i~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (452)
+.. +...+.+++|+ |++ ..+++++ ++.|.+|++..+.......... .+..+.|+ ++..++.++
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s- 355 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGT- 355 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEE-
T ss_pred eccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEE-
Confidence 443 23368999999 998 5666666 8899999987765333222223 45678888 666655444
Q ss_pred CCCeEE-EEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 266 EDCNCY-SYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 266 ~~~~i~-~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
.+..++ +||....... .. .+|...+..++|||||++|++++.++.|++||+.+++...... .+...+.+++|||||
T Consensus 356 ~~~~l~~~~d~~~~~~~-~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG 432 (1045)
T 1k32_A 356 REGDFLGIYDYRTGKAE-KF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNS 432 (1045)
T ss_dssp TTEEEEEEEETTTCCEE-EC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTS
T ss_pred CCCceEEEEECCCCCce-Ee-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCC
Confidence 477888 8998764322 22 2777889999999999999999999999999999988766653 344778999999999
Q ss_pred CEEEEeeCCC----------cEEEeeccccc
Q 012994 345 SYVISGSDDT----------NLRLWKAKASE 365 (452)
Q Consensus 345 ~~l~s~~~dg----------~i~iw~~~~~~ 365 (452)
++|++++.++ .|++||+.+++
T Consensus 433 ~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 433 RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9998877654 89999999876
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.93 E-value=1.4e-23 Score=187.12 Aligned_cols=262 Identities=8% Similarity=0.077 Sum_probs=194.2
Q ss_pred HHHhhhhhccccccccccccccEEEEEeCCCCcceEEEe-eCCCcEEEEeCCCCce-EEEeecCCCCeeEEEEccCCCeE
Q 012994 47 AAKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSG-SMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTDGRIL 124 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg-~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l 124 (452)
.+.+|+..++.++..+..+...+ +++|+|++ ++++++ ..++.|.+||+.+++. ...+..+..+..+++|+|++++|
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg-~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 98 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGYDFV-DTAITSDC-SNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFA 98 (331)
T ss_dssp EEEEEETTTCCEEEEEECCCCEE-EEEECSSS-CEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEE
T ss_pred eEEEEeCcccceeeeEEccCCcc-eEEEcCCC-CEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEE
Confidence 45567776777777777677777 99999998 655554 4489999999999987 77777777766669999999999
Q ss_pred EEEeCCC---cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---Ce-EEEEeCCCCCcce
Q 012994 125 VSCGTDC---TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQ-VDIWNHNRSQPIN 197 (452)
Q Consensus 125 ~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-i~i~d~~~~~~~~ 197 (452)
+++..++ .|.+||+.+++. ............++++|+|+.+++.+ +. +.+|++.....+.
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~-------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 99 VTVTGLNHPFNMQSYSFLKNKF-------------ISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF 165 (331)
T ss_dssp EECCCSSSSCEEEEEETTTTEE-------------EEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred EEecCCCCcccEEEEECCCCCe-------------EEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence 9655553 899999977633 33344455668999999998555442 56 9999988654431
Q ss_pred ----ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC---ceEEEeecccceEEEccCCCceEEeecCCCeE
Q 012994 198 ----SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP---ARKVIMRTKSNSISWNPMEPMNFTAANEDCNC 270 (452)
Q Consensus 198 ----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (452)
........+..++|+|++..+++++..++.|.+||+.+++. +..+........++|+|++..++++...++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i 245 (331)
T 3u4y_A 166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDV 245 (331)
T ss_dssp EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEE
T ss_pred ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEE
Confidence 11123456789999999955666777799999999999888 77777777788999999999888888888899
Q ss_pred EEEeCCCccc--cceeee------CcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCce
Q 012994 271 YSYDSRKLDE--AKCVHM------GHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRS 323 (452)
Q Consensus 271 ~~~d~~~~~~--~~~~~~------~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~ 323 (452)
.+||..+... ...... ........++|+|+|++|++++ .++.|.+||+.....
T Consensus 246 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 246 FNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 9999986543 111110 1111235689999999886655 467999999987554
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=5e-23 Score=184.45 Aligned_cols=269 Identities=8% Similarity=0.067 Sum_probs=184.6
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCC-CcEEEEeCC--CCc--eEEEeecCCCCeeEEEEccCCCeEEEEeC-CCcEEEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMD-GDIRLWDIA--NRR--TVCQYSGHQGAVRGLTVSTDGRILVSCGT-DCTVKLW 136 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~d-g~i~iwd~~--~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg~v~iw 136 (452)
..|...+.+++|+|++ ++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+|
T Consensus 34 ~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~ 111 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDK-RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVT 111 (343)
T ss_dssp EECSSCCCCEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred EecCCCCceEEECCCC-CEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEE
Confidence 3477789999999998 878877776 999999997 554 344555444 8899999999998877665 8899999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCC-CCcce----eccc-CCCceE
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNR-SQPIN----SFQW-GTDTVI 207 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~-~~~~~----~~~~-~~~~i~ 207 (452)
|+..+.. ............+..++++|++..+++++ +.+.+||+.+ ++... .+.. ....+.
T Consensus 112 d~~~~~~----------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 181 (343)
T 1ri6_A 112 RLEDGLP----------VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 181 (343)
T ss_dssp EEETTEE----------EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEE
T ss_pred ECCCCcc----------ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcc
Confidence 9952211 12223333445678899999998766654 6799999987 54322 2222 234788
Q ss_pred EEEECCCCCcEEEEEecCCeEEEEEccC--CCCceEEEee---------cccceEEEccCCCceEEeecCCCeEEEEeCC
Q 012994 208 SVRFNPAEPNVLATTASDRSITLYDLRM--SSPARKVIMR---------TKSNSISWNPMEPMNFTAANEDCNCYSYDSR 276 (452)
Q Consensus 208 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 276 (452)
+++|+|++..+++++..++.|.+||+.. +......... .....++|+|++..++++...++.+.+||+.
T Consensus 182 ~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 182 HMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 9999999854556666899999999964 3221111111 1223699999999888888899999999997
Q ss_pred Cc---cccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEEC--CCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 277 KL---DEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQY--NGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 277 ~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
.. .........+. .+.+++|+|+|++|++++ .++.|.+|++ .++...............+++|.++.
T Consensus 262 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~ 334 (343)
T 1ri6_A 262 EDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHE 334 (343)
T ss_dssp TTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC
T ss_pred CCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEccc
Confidence 31 11222222333 388999999999888887 6899999954 46644322211112446677777654
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.92 E-value=3e-23 Score=212.33 Aligned_cols=328 Identities=8% Similarity=0.036 Sum_probs=228.5
Q ss_pred HHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCC------CcEEEEeCCCCceEEEeecCCCCe-------eE
Q 012994 48 AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMD------GDIRLWDIANRRTVCQYSGHQGAV-------RG 114 (452)
Q Consensus 48 ~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~d------g~i~iwd~~~~~~~~~~~~h~~~v-------~~ 114 (452)
+.+|+...+ ....+.+|.+.|.+++||||| ++||+++.+ ..|++||+.+++ ...+..|...+ ..
T Consensus 35 l~~~~~~gg-~~~~lt~~~~~v~~~~~SPDG-~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~ 111 (1045)
T 1k32_A 35 LWEHDLKSG-STRKIVSNLGVINNARFFPDG-RKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDV 111 (1045)
T ss_dssp EEEEETTTC-CEEEEECSSSEEEEEEECTTS-SEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEE
T ss_pred EEEEECCCC-cEEEeeeCCCcccCeEECCCC-CEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCccccccccccc
Confidence 445555433 346778899999999999999 888877543 479999998876 56778888888 99
Q ss_pred EEEccCCCeEEEEeCC------CcEEEEeCCCCCCCCCCCCCC---------------------------C---------
Q 012994 115 LTVSTDGRILVSCGTD------CTVKLWNVPVATLTDSDDSTD---------------------------N--------- 152 (452)
Q Consensus 115 l~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~---------------------------~--------- 152 (452)
++|+|||+++++++.+ ..|.+|++..+.......... .
T Consensus 112 ~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 112 AGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred ccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 9999999977777754 357778876654321111100 0
Q ss_pred -CCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCC-CCcceecccCCCceEEEEECCCCCcEEEEEecCCeE
Q 012994 153 -SSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNR-SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSI 228 (452)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 228 (452)
.........+...+.++.|+++ .++++++ +.+.+|.+.. +.....+..+. .+...+|+|++ ..++.+ .++.|
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG-~~la~~-~~~~i 267 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDG-RRILFS-KGGSI 267 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESS-SCEEEE-ETTEE
T ss_pred CCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCC-CEEEEE-eCCEE
Confidence 0001111234556777788877 4444443 5678887653 33445555444 45677999998 556555 58999
Q ss_pred EEEEccCCCCceEEEe------------ecccceEEEc-cCCCceEEeecCCCeEEEEeCCCccccceeeeCccc-ceEE
Q 012994 229 TLYDLRMSSPARKVIM------------RTKSNSISWN-PMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHES-AVMD 294 (452)
Q Consensus 229 ~i~d~~~~~~~~~~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~v~~ 294 (452)
.+||+.. ..+..+.. ...+..++|+ |++..++++. ++.+++|+....... ....|.. .+..
T Consensus 268 ~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~--~~~~~~~~~~~~ 342 (1045)
T 1k32_A 268 YIFNPDT-EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVL--KVPEPLRIRYVR 342 (1045)
T ss_dssp EEECTTT-CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEE--ECSCCSCEEEEE
T ss_pred EEecCCc-eEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceE--EccCCCcceEEe
Confidence 9999843 22222221 2257899999 9998866665 789999998764422 2345666 8999
Q ss_pred EEEcCCCCEEEEEeCCCeEE-EEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCChh
Q 012994 295 IDYSPTGREFVTGSYDRTIR-IFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHPR 373 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 373 (452)
++|+ ||+.|++++.++.+. +||+.++...... .+...+..++|+|||++|++++.++.|++||+.+++....+.
T Consensus 343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-- 417 (1045)
T 1k32_A 343 RGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-- 417 (1045)
T ss_dssp ECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--
T ss_pred eeEc-CCCeEEEEECCCceEEEEECCCCCceEec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc--
Confidence 9999 999999999888899 9999887655443 455789999999999999999999999999999887654432
Q ss_pred hhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 374 EQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
.|...+..++|+|+-..++
T Consensus 418 ---------------~~~~~v~~~~~SpDG~~la 436 (1045)
T 1k32_A 418 ---------------SREAMITDFTISDNSRFIA 436 (1045)
T ss_dssp ---------------CSSSCCCCEEECTTSCEEE
T ss_pred ---------------CCCCCccceEECCCCCeEE
Confidence 2444556677777655443
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.9e-22 Score=179.81 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=182.8
Q ss_pred eEEEee----CCCcEEEEeCC--CCceEE-EeecCCCCeeEEEEccCCCeEEEEeC---CCcEEEEeCCCCCCCCCCCCC
Q 012994 81 GFFSGS----MDGDIRLWDIA--NRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGT---DCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 81 ~l~tg~----~dg~i~iwd~~--~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~ 150 (452)
.+++|+ .++.|.+|++. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++..+..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~------- 75 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA------- 75 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------
Confidence 455553 34567777654 455432 2334567788899999999 665554 68999999965532
Q ss_pred CCCCCCeeE-EEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCC---cceeccc---------CCCceEEEEECCC
Q 012994 151 DNSSEPLAV-YVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQ---PINSFQW---------GTDTVISVRFNPA 214 (452)
Q Consensus 151 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~---~~~~~~~---------~~~~i~~~~~~~~ 214 (452)
..+.. ......+..++++|+|..+++++ +.+.+|++.... .+..+.. ....+.+++|+|+
T Consensus 76 ----~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 76 ----HKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp ----EEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred ----EEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCC
Confidence 11222 33456778899999999777665 579999996322 2222221 1124888999999
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEE---Ee--ecccceEEEccCCCceEEeecCCCeEEEEeCCCc-ccc--ceeee
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKV---IM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL-DEA--KCVHM 286 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~--~~~~~ 286 (452)
+. ++++...++.|.+||+.....+... .. ......++|+|++..++++...++.+.+|+.... ... .....
T Consensus 152 g~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 230 (347)
T 3hfq_A 152 NR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK 230 (347)
T ss_dssp SC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE
T ss_pred Cc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee
Confidence 95 7777778899999999833322221 11 1245679999999988888889999999987741 111 11111
Q ss_pred Ccc------cceEEEEEcCCCCEE-EEEeCCCeEEEEECCCC---ceeeeeccCCcCcEEEEEEcCCCCEEEEeeC-CCc
Q 012994 287 GHE------SAVMDIDYSPTGREF-VTGSYDRTIRIFQYNGG---RSREIYHTKRMQRVFCVKFSCDASYVISGSD-DTN 355 (452)
Q Consensus 287 ~~~------~~v~~~~~s~~g~~l-~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~ 355 (452)
... ..+..++|+|||++| +++..++.|.+|++... .....+.. +...+..++|+|||++|++++. ++.
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~ 309 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIST-EGDFPRDFDLDPTEAFVVVVNQNTDN 309 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEEC-SSSCCCEEEECTTSSEEEEEETTTTE
T ss_pred ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEec-CCCCcCeEEECCCCCEEEEEEcCCCc
Confidence 111 458889999999987 45566899999999732 22222322 2245789999999998888775 489
Q ss_pred EEEe--eccccccc
Q 012994 356 LRLW--KAKASEQL 367 (452)
Q Consensus 356 i~iw--~~~~~~~~ 367 (452)
|.+| |..+|++.
T Consensus 310 v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 310 ATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEEECTTTCCEE
T ss_pred EEEEEEeCCCCeEE
Confidence 9999 55566543
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=9e-24 Score=203.13 Aligned_cols=268 Identities=11% Similarity=0.017 Sum_probs=194.0
Q ss_pred cccEEEEEeCCCCcceEEEeeC-CCcEEEEeCCCCceEEEeecCC-CCeeEEEEccCCCeEEEEeC---CCcEEEEeCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGT---DCTVKLWNVPV 140 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~---dg~v~iwd~~~ 140 (452)
..+|++++|+||| +.||+++. ||++.||++.+++.. .+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCCC-CeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 4579999999999 88888776 999999999766654 444455 68999999999 77777765 45567766543
Q ss_pred --CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC--eEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 141 --ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD--LFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
.... . ...........++++++. .+++.. +.+.+||+.+++.......+. .+++|+|+|
T Consensus 98 ~~~g~~------------~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG 161 (582)
T 3o4h_A 98 SRPGEE------------Q-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRG 161 (582)
T ss_dssp TSTTCC------------E-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEET
T ss_pred cCCCcc------------c-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCC
Confidence 2110 0 111111233456777775 444443 457799998887655444332 789999998
Q ss_pred CcEEEEEecC----CeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcc
Q 012994 216 PNVLATTASD----RSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 216 ~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~ 289 (452)
+.+++++.+ +.|++||+.+++.............++|+|++..++ ++..++ .|++||..+.... ...+|.
T Consensus 162 -~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~~~~~i~~~d~~~~~~~--~~~~~~ 237 (582)
T 3o4h_A 162 -DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTA-GLETAREARLVTVDPRDGSVE--DLELPS 237 (582)
T ss_dssp -TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEE-EEECSSCEEEEEECTTTCCEE--ECCCSC
T ss_pred -CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEE-EccCCCeeEEEEEcCCCCcEE--EccCCC
Confidence 677777766 789999998877653333345568899999999876 666777 8999999876544 555676
Q ss_pred cceEEEE--------EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCC---cEEE
Q 012994 290 SAVMDID--------YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDT---NLRL 358 (452)
Q Consensus 290 ~~v~~~~--------~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~i 358 (452)
..+..++ |+|||.++++++.||.+++|++ ++.... ..+.+.+++|+ +++++++++.+. .+.+
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~ 310 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVS 310 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc----CCCceEEEEec-CCEEEEEEcCCCCCCeEEE
Confidence 6676677 9999998999999999999999 655431 22578999999 999999888774 4777
Q ss_pred eeccc
Q 012994 359 WKAKA 363 (452)
Q Consensus 359 w~~~~ 363 (452)
|+...
T Consensus 311 ~d~~~ 315 (582)
T 3o4h_A 311 LPSGE 315 (582)
T ss_dssp ETTCC
T ss_pred EcCCC
Confidence 77654
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.9e-23 Score=203.54 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=186.1
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE-EEeecCC-----------------CCeeEEEEccCCCeEEEEeCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV-CQYSGHQ-----------------GAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~l~~~~~~~~l~s~~~d 130 (452)
+..+.|. + ..+++++.|| | +||+.+++.+ ..+..|. ..|.+++|+|| ..++.+. +
T Consensus 28 ~~~~~w~--g-~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--G-DNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--T-TEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc--C-CeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4446677 4 5667777777 8 9999998873 3443333 56999999999 6665553 5
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCC-----CCcceecccCCC
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNR-----SQPINSFQWGTD 204 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~-----~~~~~~~~~~~~ 204 (452)
+.|.+||+.++.. .........+..++|+|+|..+++.. +.|.+||+.+ ++.......+..
T Consensus 101 ~~i~~~d~~~~~~-------------~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 101 GGLVGFDMLARKV-------------TYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TEEEEEETTTTEE-------------EEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CEEEEEECCCCce-------------EEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCC
Confidence 9999999976632 23333455678899999999877754 6899999998 776654444333
Q ss_pred c--------------eEEEEECCCCCcEEEEEe---------------------------------cCCeEEEEEccCCC
Q 012994 205 T--------------VISVRFNPAEPNVLATTA---------------------------------SDRSITLYDLRMSS 237 (452)
Q Consensus 205 ~--------------i~~~~~~~~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~ 237 (452)
. +.++.|+|++ +.|++++ .+..|.+||+.++.
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 2 4789999998 5666666 44679999998766
Q ss_pred CceEEE---eecccceEEEccCCCceEEeecCC----CeEEEEeCCCccccceeee-Cccc---ceEEEEEcC--CCCEE
Q 012994 238 PARKVI---MRTKSNSISWNPMEPMNFTAANED----CNCYSYDSRKLDEAKCVHM-GHES---AVMDIDYSP--TGREF 304 (452)
Q Consensus 238 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~~~~~~~~~~-~~~~---~v~~~~~s~--~g~~l 304 (452)
...... ....+..+.|+|++..++++.... ..+++||..+......... .+.. .+.+++|+| ||+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l 326 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI 326 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEE
Confidence 433221 123456899999999766655433 4899999987633332222 2222 246789999 99999
Q ss_pred EEEeCCCeEEEEECC-CCceeeeeccCCcCcEEE-EEEcCCCCEEEEeeC-CC----cEEEeeccccc
Q 012994 305 VTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFC-VKFSCDASYVISGSD-DT----NLRLWKAKASE 365 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~-dg----~i~iw~~~~~~ 365 (452)
++++.||.+++|++. ++.....+.. +...+.. ++|+|+++.|+.++. ++ .|..|++.+++
T Consensus 327 ~~~~~~g~~~l~~~~~~~~~~~~l~~-~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 327 WQSRRDGWNHLYLYDTTGRLIRQVTK-GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp EEECTTSSCEEEEEETTSCEEEECCC-SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred EEEccCCccEEEEEECCCCEEEecCC-CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 999999999999876 4554444433 3356766 899999998765544 44 56667776654
No 149
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.8e-21 Score=175.13 Aligned_cols=246 Identities=9% Similarity=0.012 Sum_probs=187.3
Q ss_pred CCCCeeEEEEccCCCeEEEEeC-------CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE
Q 012994 108 HQGAVRGLTVSTDGRILVSCGT-------DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 108 h~~~v~~l~~~~~~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
....+..++|+|++++|++++. ++.|.+||..+++ .............+.+++++..++.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-------------VTQAIHNDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-------------EEEEEEESSCCCSEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-------------EEEEEecCCCcceEEECCCCCEEEE
Confidence 3456889999999998888874 5689999998763 3333444556778999999985544
Q ss_pred e-C--CeEEEEeCCCCCcceecccCCC---------ceEEEEECCCCCcEEEEE-ecCCeEEEEEccCCCCceEEE-eec
Q 012994 181 A-G--AQVDIWNHNRSQPINSFQWGTD---------TVISVRFNPAEPNVLATT-ASDRSITLYDLRMSSPARKVI-MRT 246 (452)
Q Consensus 181 ~-~--~~i~i~d~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~-~~~ 246 (452)
. . +.+.+||..+++.+..+..+.. .+.+++|+|++..+++++ +.++.|.+||+.+.+....+. ...
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK 185 (353)
T ss_dssp EETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred EecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence 3 3 5799999999998877766432 278899999985444444 358899999999888777776 445
Q ss_pred ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---CcccceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCc
Q 012994 247 KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---GHESAVMDIDYSPTGREFVTGSY-DRTIRIFQYNGGR 322 (452)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~~ 322 (452)
....+.|+|++..++++ +.++.+.+||..+......... ++...+.+++|+|+|+++++++. ++.|.+||+.+++
T Consensus 186 ~~~~~~~s~dg~~l~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTT-NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN 264 (353)
T ss_dssp TCCCCEEETTTTEEEEE-CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEECCCCCEEEEE-cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc
Confidence 57889999999875554 5589999999987665444333 34556888999999998776665 5999999999998
Q ss_pred eeeeeccCCcCcEEEEEEcCCCCEEEEee-CCCcEEEeecccccccccC
Q 012994 323 SREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 323 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~ 370 (452)
....+..+. ...++|+|++++++.++ .++.|.+||..+++.+..+
T Consensus 265 ~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 265 ILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp EEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 877765543 25699999999665554 6899999999998887655
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=3.3e-21 Score=172.90 Aligned_cols=252 Identities=10% Similarity=0.069 Sum_probs=175.2
Q ss_pred ccccccEEEEEeCCCCcceEEEeeC---CCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEEEEe-CCCcEEEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSM---DGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLW 136 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~---dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iw 136 (452)
..+...+..++|+|+| + |++++. ++.|.+||+.+++ .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spdg-~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAKD-C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTTC-E-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccCC-e-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 3456778899999998 6 554443 6899999997765 3445555778899999999999888887 67999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEe----------cCCeeeeeecCCCCeEEEeC--CeEEEEeCC-CCCcce--eccc
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVW----------KNSFWAVDHQWEGDLFATAG--AQVDIWNHN-RSQPIN--SFQW 201 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~-~~~~~~--~~~~ 201 (452)
++...... ........ ...+..++++|+|.++++.. +.+.+|++. +++... .+..
T Consensus 114 ~~~~~g~~----------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~ 183 (347)
T 3hfq_A 114 KIAADGAL----------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM 183 (347)
T ss_dssp EECTTSCE----------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred EeCCCCCe----------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc
Confidence 99532110 11111111 12467899999999666554 479999998 443321 1222
Q ss_pred -CCCceEEEEECCCCCcEEEEEecCCeEEEEEccC--CCCceEEEee---------cccceEEEccCCCceEEeecCCCe
Q 012994 202 -GTDTVISVRFNPAEPNVLATTASDRSITLYDLRM--SSPARKVIMR---------TKSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 202 -~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
....+..++|+|++..+++++..++.|.+|++.. +......... .....++|+|++..++++...++.
T Consensus 184 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 184 EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 2336788999999954666677889999999885 3221111111 225579999999998888888999
Q ss_pred EEEEeCCCcc--ccceeeeCcccceEEEEEcCCCCEEEEEeCC-CeEEEE--ECCCCceeee
Q 012994 270 CYSYDSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSYD-RTIRIF--QYNGGRSREI 326 (452)
Q Consensus 270 i~~~d~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-g~i~iw--d~~~~~~~~~ 326 (452)
+.+|++.... ........+...+..++|+|||++|++++.+ +.|.+| |..+++....
T Consensus 264 v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 264 LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 9999987332 2222333445568899999999988888764 899999 5556665433
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=4e-21 Score=173.36 Aligned_cols=273 Identities=12% Similarity=0.123 Sum_probs=182.1
Q ss_pred ceEEEee----CCCcEEEEeC--CCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC----CcEEEEeCCCC--CCCCCC
Q 012994 80 KGFFSGS----MDGDIRLWDI--ANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD----CTVKLWNVPVA--TLTDSD 147 (452)
Q Consensus 80 ~~l~tg~----~dg~i~iwd~--~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g~v~iwd~~~~--~~~~~~ 147 (452)
.+++.|+ .++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|++... ..
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~---- 89 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL---- 89 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE----
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE----
Confidence 4566664 4568999876 4555433222267788899999999999999886 79999998653 11
Q ss_pred CCCCCCCCCeeEEE-ecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecc--------------cCCCceEEE
Q 012994 148 DSTDNSSEPLAVYV-WKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQ--------------WGTDTVISV 209 (452)
Q Consensus 148 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~--------------~~~~~i~~~ 209 (452)
..+.... .......+++ ++..+++++ +.+.+|++.....+..+. .+...+.++
T Consensus 90 -------~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (361)
T 3scy_A 90 -------HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCV 160 (361)
T ss_dssp -------EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEE
T ss_pred -------EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEE
Confidence 1111111 2234455666 777666553 579999997654332221 112345789
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCC------ce------EEE--eecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSP------AR------KVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
+|+|++..+++++..++.|.+|++..... +. ... .......++|+|++..++++...++.+.+|++
T Consensus 161 ~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~ 240 (361)
T 3scy_A 161 RITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRY 240 (361)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEe
Confidence 99999955666666689999999876542 21 111 13345689999999988888888999999998
Q ss_pred CCccc--ccee--eeCcccceEEEEEcCCCCEEEEEeCC--CeEEEEECC--CCce--eeeeccCCcCcEEEEEEcCCCC
Q 012994 276 RKLDE--AKCV--HMGHESAVMDIDYSPTGREFVTGSYD--RTIRIFQYN--GGRS--REIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 276 ~~~~~--~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~d--g~i~iwd~~--~~~~--~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
..... .... ...+......++|+|||++|+++..+ +.|.+|++. ++.. +..... ...+.+++|+|||+
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~ 318 (361)
T 3scy_A 241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGK 318 (361)
T ss_dssp ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSC
T ss_pred cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCC
Confidence 74321 1111 12233456799999999998776654 899999996 4443 222222 35688999999999
Q ss_pred EEEEee-CCCcEEEeec--cccccc
Q 012994 346 YVISGS-DDTNLRLWKA--KASEQL 367 (452)
Q Consensus 346 ~l~s~~-~dg~i~iw~~--~~~~~~ 367 (452)
+|++++ .++.|.+|++ .+++..
T Consensus 319 ~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 319 YLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EEEEEECCCCCEEEEEEECCCCcEe
Confidence 888877 6789999654 466553
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=5.2e-22 Score=173.80 Aligned_cols=251 Identities=14% Similarity=0.047 Sum_probs=183.1
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCC-CCcceecccC-
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNR-SQPINSFQWG- 202 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~-~~~~~~~~~~- 202 (452)
+++.|+.|.+||+.++ .......+...+.+++|+|++.++++++ +.|.+||+.+ ++.......+
T Consensus 17 ~~~~~~~i~~~d~~~~-------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-------------KMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFA 83 (297)
T ss_dssp -CCCCEEEEEEETTTT-------------EEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTC
T ss_pred CCCcceeEEEEeCCCC-------------ceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccc
Confidence 3467899999999766 3344556678899999999999888776 6899999999 8777666555
Q ss_pred CCceEEEEECCCCCcEEEEEe--cCCeEEEEEcc--CCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 203 TDTVISVRFNPAEPNVLATTA--SDRSITLYDLR--MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~--~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
...+.+++|+|++ ..+++++ .++...+|.+. +.. ...+........+.|+|++..+++++..++.+.+|+....
T Consensus 84 ~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 84 TICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccceEECCCC-CEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 3678999999998 6777777 33556666554 333 3334444456778999999998888888898888886543
Q ss_pred cccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECC-CCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC---
Q 012994 279 DEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD--- 353 (452)
Q Consensus 279 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--- 353 (452)
.........+...+.+++|+|+|++|+.++ .++.+++|++. .+.....+. .+...+..++|+|+|++|++++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 162 SGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp TCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred CCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCC
Confidence 333344556778899999999999888766 58899999886 343443433 333678999999999999888765
Q ss_pred --------CcEEEeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 354 --------TNLRLWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 354 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
+.|++||+.+++...... ...+...+..++|+|+-..++
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~spdg~~l~ 287 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNVETLFD---------------LFGGQGTMNSPNWSPDGDEFA 287 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSCEEEEE---------------EEESTTTSCSCCBCTTSSEEE
T ss_pred CcccccCceEEEEEecCCCCceeeec---------------cCCCCcccccceECCCCCEEE
Confidence 569999998876532221 014455677888888766544
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=2e-21 Score=173.59 Aligned_cols=262 Identities=12% Similarity=0.054 Sum_probs=189.3
Q ss_pred Hhhhhhccccccccc-cccc-cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-C----CCCeeEEEEccCC
Q 012994 49 KLEKIFARPFIGALD-GHRD-GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-H----QGAVRGLTVSTDG 121 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~-~h~~-~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h----~~~v~~l~~~~~~ 121 (452)
.+|+..+...+..+. ++.. .+.+++|+|++..++++++.++.|.+||+.+++.+..+.. + ...+.+++|+|++
T Consensus 14 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 14 VVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp EEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred EEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCC
Confidence 345555555555554 2222 4889999999833456667789999999999988776653 2 2267889999999
Q ss_pred CeEEEEe------------CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEe
Q 012994 122 RILVSCG------------TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (452)
Q Consensus 122 ~~l~s~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (452)
++|++++ .++.|.+||+.+++. .........+..+.++|++..++++++.+.+||
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d 160 (337)
T 1pby_B 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-------------RKAFEAPRQITMLAWARDGSKLYGLGRDLHVMD 160 (337)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-------------EEEEECCSSCCCEEECTTSSCEEEESSSEEEEE
T ss_pred CEEEEEecccccccccccccCceEEEEECCCCcE-------------EEEEeCCCCcceeEECCCCCEEEEeCCeEEEEE
Confidence 9998886 579999999976532 233333456778899999998888889999999
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC-----------------------eEEEEEccCCCCceEEEe--
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-----------------------SITLYDLRMSSPARKVIM-- 244 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~-- 244 (452)
+.+++....+..+.. ...+.|+|++..+++++..++ .|.+||+.+++.. .+..
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~ 238 (337)
T 1pby_B 161 PEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI 238 (337)
T ss_dssp TTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE
T ss_pred CCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC
Confidence 999887766654331 112377888754444443333 4689999887765 3322
Q ss_pred -ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce
Q 012994 245 -RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
......++|+|++..++++ ++.+++||..+........ ....+.+++|+|+|++|++++.++.|.+||+.+++.
T Consensus 239 ~~~~~~~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 239 MDVFYFSTAVNPAKTRAFGA---YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCCceeeEEECCCCCEEEEe---CCeEEEEECCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 2345679999999886665 6899999998765444332 234678999999999999999999999999999887
Q ss_pred eeeeccC
Q 012994 324 REIYHTK 330 (452)
Q Consensus 324 ~~~~~~~ 330 (452)
...+..+
T Consensus 314 ~~~~~~~ 320 (337)
T 1pby_B 314 KGQVDLP 320 (337)
T ss_dssp EEEEECG
T ss_pred EEEEEcC
Confidence 7666443
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.1e-22 Score=187.10 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=152.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----------ceEEE-----eecCCCCeeEEEEccCCCeEE----E
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----------RTVCQ-----YSGHQGAVRGLTVSTDGRILV----S 126 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----------~~~~~-----~~~h~~~v~~l~~~~~~~~l~----s 126 (452)
...++.+++++++ .++++|+.|+ +++|+.... ..+.. ...|...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 4568999999998 8999999888 888874311 01111 123567899999999999999 7
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCce
Q 012994 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTV 206 (452)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i 206 (452)
++.|+.|++||+.+...... ....+ ...+..+.+|...|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~-----~~~~~------------------------------------~~~~~~~~~h~~~V 152 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAK-----QQKRP------------------------------------FAYHKLLKDAGGMV 152 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTC-----SSCCC------------------------------------SEEEECCCSGGGSE
T ss_pred cCCCceEEEEEccccccCCc-----CCcce------------------------------------eeeeeccCCCCCce
Confidence 88999999999864310000 00000 00123445678899
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM 286 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 286 (452)
.+++|+|+++.+|++++.||+|++||+++..... ...
T Consensus 153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~-------------------------------------------~~~ 189 (434)
T 2oit_A 153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC-------------------------------------------ATL 189 (434)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE-------------------------------------------EEE
T ss_pred EEEEECCCCCCEEEEEECCCeEEEEEcCCCccee-------------------------------------------ecc
Confidence 9999999866899999999999999998652211 112
Q ss_pred CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc------CCcCcEEEEEEcCCCCEEEE-eeCCC-----
Q 012994 287 GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT------KRMQRVFCVKFSCDASYVIS-GSDDT----- 354 (452)
Q Consensus 287 ~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~s~~~~~l~s-~~~dg----- 354 (452)
+|...|++++|+|+|++|++|+.||.|++||++ +.....+.. .|...|.+++|++++.++++ .+.||
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 577889999999999999999999999999998 444333321 12237999999999888764 33443
Q ss_pred -cEEEeecccc
Q 012994 355 -NLRLWKAKAS 364 (452)
Q Consensus 355 -~i~iw~~~~~ 364 (452)
.+++|++...
T Consensus 269 ~~v~i~~l~~~ 279 (434)
T 2oit_A 269 PDVVMALLPKK 279 (434)
T ss_dssp CEEEEEECCCT
T ss_pred CceEEEEeccC
Confidence 3899998764
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=5.6e-20 Score=165.83 Aligned_cols=273 Identities=11% Similarity=0.084 Sum_probs=179.1
Q ss_pred ccccEEEEEeCCCCcceEEEeeCC----CcEEEEeCCC--Cc--eEEEeecCCCCeeEEEEccCCCeEEEEe-CCCcEEE
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMD----GDIRLWDIAN--RR--TVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKL 135 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~d----g~i~iwd~~~--~~--~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~i 135 (452)
|...+..++|+|++ ++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 67788899999999 888888875 7999998865 43 33344445667788888 778777776 5789999
Q ss_pred EeCCCCCCCCCCCCC--CCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCc------c-------e
Q 012994 136 WNVPVATLTDSDDST--DNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQP------I-------N 197 (452)
Q Consensus 136 wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~------~-------~ 197 (452)
|++............ .....+.........+..++++|+|+.+++.+ +.+.+|++..... + .
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 999754332211100 00000000000122346799999999665543 5799998875442 1 1
Q ss_pred ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee------cccceEEEccCCCceEEeecC-CCeE
Q 012994 198 SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR------TKSNSISWNPMEPMNFTAANE-DCNC 270 (452)
Q Consensus 198 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~i 270 (452)
........+..++|+|++..+++++..++.|.+||+.++......... .....++|+|++..++++... ++.+
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 112234567899999998434444447899999999865432222221 123589999999988777777 7899
Q ss_pred EEEeCCCc-cc--cceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEE--ECCCCceeeeeccCCcCcEEEEEEc
Q 012994 271 YSYDSRKL-DE--AKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIF--QYNGGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 271 ~~~d~~~~-~~--~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~s 341 (452)
.+|++... .. ....... ...+.+++|+|+|++|++++ .++.|.+| |..+++........+...+.|+.|.
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 99998621 11 1122222 45678999999999988887 67899996 4556766555433344678999886
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=4.5e-21 Score=174.83 Aligned_cols=293 Identities=11% Similarity=0.030 Sum_probs=193.8
Q ss_pred ccccccccccccccEEE-----EEeCCCCcceEEEeeC-CC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEE
Q 012994 55 ARPFIGALDGHRDGISC-----MAKNPNYLKGFFSGSM-DG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVS 126 (452)
Q Consensus 55 ~~~~~~~l~~h~~~V~~-----~~~~~~~~~~l~tg~~-dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s 126 (452)
++..+..+..|...... .+|+||| ++|+.++. +| .|.+||+.+++......++...+..+.|+||++.|+.
T Consensus 19 ~g~~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~ 97 (388)
T 3pe7_A 19 TGAQVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFY 97 (388)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEE
T ss_pred CCcceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEE
Confidence 34455667777776666 8899999 87777776 66 4888999998887766767666667899999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCC-ee--eeeecCCCCeEEEe----------------------
Q 012994 127 CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNS-FW--AVDHQWEGDLFATA---------------------- 181 (452)
Q Consensus 127 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~---------------------- 181 (452)
++.++.|.+||+.+++. ......... +. ...+++++..++..
T Consensus 98 ~~~~~~l~~~d~~~g~~-------------~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T 3pe7_A 98 VKDGRNLMRVDLATLEE-------------NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT 164 (388)
T ss_dssp EETTTEEEEEETTTCCE-------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred EeCCCeEEEEECCCCcc-------------eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence 99999999999987642 112222221 21 22347888887632
Q ss_pred --CCeEEEEeCCCCCcceecccCCCceEEEEECC-CCCcEEEEEecC------CeEEEEEccCCCCceEEEee--cccce
Q 012994 182 --GAQVDIWNHNRSQPINSFQWGTDTVISVRFNP-AEPNVLATTASD------RSITLYDLRMSSPARKVIMR--TKSNS 250 (452)
Q Consensus 182 --~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~~~~~ 250 (452)
...|.+||+.+++... +..+...+..+.|+| ++ ..|+.+..+ ..|.++|+............ .....
T Consensus 165 ~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 242 (388)
T 3pe7_A 165 KPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH 242 (388)
T ss_dssp CCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred CCcceEEEEECCCCceEE-eecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence 1469999999886544 334566789999999 88 556555543 36778887655432222222 13456
Q ss_pred EEEccCCCceEEeecCCC----eEEEEeCCCccccce-eeeCcccc---eEEEEEcCCCCEEEEE---------eCCCeE
Q 012994 251 ISWNPMEPMNFTAANEDC----NCYSYDSRKLDEAKC-VHMGHESA---VMDIDYSPTGREFVTG---------SYDRTI 313 (452)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~----~i~~~d~~~~~~~~~-~~~~~~~~---v~~~~~s~~g~~l~s~---------~~dg~i 313 (452)
..|+|++..++.++..++ .+++||+.+...... ...++... ...++|+|||+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 789999998766554332 399999987653221 11121100 1223799999988754 456789
Q ss_pred EEEECCCCceeeeeccCC---------cCcEEEEEEcCCCCEEEEee-CCCcEEEeeccc
Q 012994 314 RIFQYNGGRSREIYHTKR---------MQRVFCVKFSCDASYVISGS-DDTNLRLWKAKA 363 (452)
Q Consensus 314 ~iwd~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 363 (452)
++||+.+++......... ...+.+++|+|||+.|+..+ .+|...||.+.-
T Consensus 323 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 323 YVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred EEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 999999887644432221 00477889999999887655 577777776643
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=5.2e-21 Score=188.72 Aligned_cols=273 Identities=10% Similarity=0.056 Sum_probs=188.4
Q ss_pred EEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCC---CeeEEEEccCCCeEEEEeC---------CCcEEEEeC
Q 012994 71 CMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQG---AVRGLTVSTDGRILVSCGT---------DCTVKLWNV 138 (452)
Q Consensus 71 ~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~---~v~~l~~~~~~~~l~s~~~---------dg~v~iwd~ 138 (452)
+++|+|++ .+++++ .|++|++||+.+++....+.+|.. .+.+++|||||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg-~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQ-EYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSS-EEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCC-eEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 77999998 766655 599999999999988777765543 4899999999999998876 789999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecc-cCCCce----------
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQ-WGTDTV---------- 206 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~i---------- 206 (452)
.+++...... + ...+..++|+|+|+.++... ++|.+|++.+++...... ++...+
T Consensus 98 ~~g~~~~~~~--------l-----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ 164 (719)
T 1z68_A 98 SNGEFVRGNE--------L-----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE 164 (719)
T ss_dssp TTTEECCSSC--------C-----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred CCCcccccee--------c-----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence 8876421100 0 13577899999999888765 689999998887654332 222222
Q ss_pred -------EEEEECCCCCcEEEEEecCC----------------------------------eEEEEEccCCCCc--eEEE
Q 012994 207 -------ISVRFNPAEPNVLATTASDR----------------------------------SITLYDLRMSSPA--RKVI 243 (452)
Q Consensus 207 -------~~~~~~~~~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~--~~~~ 243 (452)
.+++|+|++ +.|++++.|. .|.+||+.++... ..+.
T Consensus 165 ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 243 (719)
T 1z68_A 165 EEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP 243 (719)
T ss_dssp HHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred eecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence 489999999 5677766542 7889998876543 1111
Q ss_pred -------eecccceEEEccCCCceEEeecC--C--CeEEEEe----CCCccccceee---eCcccceE-----EEEEcCC
Q 012994 244 -------MRTKSNSISWNPMEPMNFTAANE--D--CNCYSYD----SRKLDEAKCVH---MGHESAVM-----DIDYSPT 300 (452)
Q Consensus 244 -------~~~~~~~~~~~~~~~~~~~~~~~--~--~~i~~~d----~~~~~~~~~~~---~~~~~~v~-----~~~~s~~ 300 (452)
....+..++|+|++. ++++... + ..|++|| ..+........ .+|...+. .+.|+||
T Consensus 244 ~~~~~~~~~~~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 244 VPAMIASSDYYFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCHHHHTSCEEEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCcceEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 122356889999964 4444322 2 3588899 66544333221 46666676 8899999
Q ss_pred CCEEEE--EeCCC--eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC-----CcEEEeeccc
Q 012994 301 GREFVT--GSYDR--TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKA 363 (452)
Q Consensus 301 g~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 363 (452)
|+.|+. +..+| .|.+||+.++... .+. .+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~-~lt-~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENAI-QIT-SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTCE-ECS-CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCeEEEEEEccCCceEEEEEECCCCceE-ecc-cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 996654 44555 5777888776633 222 233457777777 77777665554 8899998764
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=6.4e-22 Score=195.22 Aligned_cols=331 Identities=12% Similarity=0.033 Sum_probs=217.5
Q ss_pred cCCCCCCchhhhhhhHhhhhHHHhhhhhccccccccccccc---cEEEEEeCCCCcceEEEeeC---------CCcEEEE
Q 012994 27 NYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRD---GISCMAKNPNYLKGFFSGSM---------DGDIRLW 94 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~~~~~~~~~~~l~tg~~---------dg~i~iw 94 (452)
.+++.+.|..... +......+.+|+...+.....+.+|.. .|.+++||||| ++|++++. ++.|++|
T Consensus 18 ~~~~~~s~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 18 TFFPNWISGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCCEESSSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCccEECCCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEE
Confidence 3456667766322 222344567788777777666666655 49999999999 88888876 7899999
Q ss_pred eCCCCceE--EEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec---------
Q 012994 95 DIANRRTV--CQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK--------- 163 (452)
Q Consensus 95 d~~~~~~~--~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (452)
|+.+++.+ ..+ ...+.+++|||||+.|+++. |+.|++||+.++......... ..........
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~---~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG---RENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC---BTTTEEESSCCHHHHHHTT
T ss_pred ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC---CcCCeEcccccceeeeecc
Confidence 99988763 222 35689999999999999986 789999999877543221110 0000000110
Q ss_pred CCeeeeeecCCCCeEEEeCC------------------------------------eEEEEeCCCCCcc--------eec
Q 012994 164 NSFWAVDHQWEGDLFATAGA------------------------------------QVDIWNHNRSQPI--------NSF 199 (452)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~------------------------------------~i~i~d~~~~~~~--------~~~ 199 (452)
.....++|+|||+.++++.. .+.+||+.+++.. ..+
T Consensus 169 ~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 169 ATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 12257999999999887641 6789999887653 223
Q ss_pred ccCCCceEEEEECCCCCcEEEEEecC----CeEEEEE----ccCCCCceEEE-----eecccc-----eEEEccCCCceE
Q 012994 200 QWGTDTVISVRFNPAEPNVLATTASD----RSITLYD----LRMSSPARKVI-----MRTKSN-----SISWNPMEPMNF 261 (452)
Q Consensus 200 ~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~ 261 (452)
..+...+.+++|+|++ .++++.... ..|.+|| +.+++....+. ....+. .+.|+|++..++
T Consensus 249 ~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 4577889999999996 677664433 2488899 66655443331 122333 788999999766
Q ss_pred Ee-ecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCC--Cce-eeeecc-
Q 012994 262 TA-ANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-----RTIRIFQYNG--GRS-REIYHT- 329 (452)
Q Consensus 262 ~~-~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~--~~~-~~~~~~- 329 (452)
+. ...++ .+++||..... ...+..+...+..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~ 404 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCH 404 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTT
T ss_pred EEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCc
Confidence 53 44444 67777876543 23333455567777777 88777766654 7788888754 321 122211
Q ss_pred --CCcCcEEEEEEcCCCCEEEE-eeCC--CcEEEeecccccccccC
Q 012994 330 --KRMQRVFCVKFSCDASYVIS-GSDD--TNLRLWKAKASEQLGVL 370 (452)
Q Consensus 330 --~~~~~v~~~~~s~~~~~l~s-~~~d--g~i~iw~~~~~~~~~~~ 370 (452)
.+...+..+.|+||+++++. ++.+ ..+.+|++.+++.+..+
T Consensus 405 ~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 405 LRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp TTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 13356788999999987764 3333 46889999888765444
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.1e-19 Score=163.88 Aligned_cols=271 Identities=10% Similarity=0.057 Sum_probs=179.2
Q ss_pred eEEEeeCC--CcEEEEeC--CCCceEE--Eee-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC-CCCCCCCCCCCCC
Q 012994 81 GFFSGSMD--GDIRLWDI--ANRRTVC--QYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP-VATLTDSDDSTDN 152 (452)
Q Consensus 81 ~l~tg~~d--g~i~iwd~--~~~~~~~--~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~-~~~~~~~~~~~~~ 152 (452)
++++|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. +++..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------- 74 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------- 74 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE--------
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE--------
Confidence 45666653 56887765 4554422 221 234468899999999999999888 99999986 54321
Q ss_pred CCCCeeEEEecCCeeeeeecCCCCe--EEEe---------------CCeEEEEeCCC-CCcceecc----cCCCceEEEE
Q 012994 153 SSEPLAVYVWKNSFWAVDHQWEGDL--FATA---------------GAQVDIWNHNR-SQPINSFQ----WGTDTVISVR 210 (452)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------------~~~i~i~d~~~-~~~~~~~~----~~~~~i~~~~ 210 (452)
.............++++|+|+. ++++ ++.+.+|++.. ++....+. .+...+.+++
T Consensus 75 ---~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 151 (365)
T 1jof_A 75 ---HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMV 151 (365)
T ss_dssp ---EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEE
T ss_pred ---EeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEE
Confidence 0111111133566899999984 4332 46799999974 55443333 2456789999
Q ss_pred ECCCCCcEEEEEe-cCCeEEEEEcc-CCCCce--EEEe---ecccceEEEccCCCceEEeecCCCeEEEEeCCC--cccc
Q 012994 211 FNPAEPNVLATTA-SDRSITLYDLR-MSSPAR--KVIM---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRK--LDEA 281 (452)
Q Consensus 211 ~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~ 281 (452)
|+|++ ++++++. .++.|.+||+. +++... .+.. ...+..++|+|++..++++...++.+.+|+... ....
T Consensus 152 ~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 152 FDPTE-TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPV 230 (365)
T ss_dssp ECTTS-SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred ECCCC-CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEE
Confidence 99998 4555554 46899999998 555332 2221 234678999999998888777788999987642 2111
Q ss_pred -----ceeee----Cccc------ceEEEE-EcCCCCEEEEEeCCC------eEEEEECC-CCceeeee--ccCCcCcEE
Q 012994 282 -----KCVHM----GHES------AVMDID-YSPTGREFVTGSYDR------TIRIFQYN-GGRSREIY--HTKRMQRVF 336 (452)
Q Consensus 282 -----~~~~~----~~~~------~v~~~~-~s~~g~~l~s~~~dg------~i~iwd~~-~~~~~~~~--~~~~~~~v~ 336 (452)
..... +|.. .+..++ |+|||++|++++.+. .|.+|++. +++..... ...+...+.
T Consensus 231 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~ 310 (365)
T 1jof_A 231 YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGH 310 (365)
T ss_dssp EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTT
T ss_pred EccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcc
Confidence 01111 2222 588999 999999988776432 89999996 56544321 111223466
Q ss_pred EEEEcC---CCCEEEEeeCC-CcEEEeecccc
Q 012994 337 CVKFSC---DASYVISGSDD-TNLRLWKAKAS 364 (452)
Q Consensus 337 ~~~~s~---~~~~l~s~~~d-g~i~iw~~~~~ 364 (452)
.++|+| ||++|++++.+ +.|.+|++...
T Consensus 311 ~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 311 SNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred cceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 789999 89999988764 89999998765
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.86 E-value=8.7e-21 Score=182.35 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=168.9
Q ss_pred CCCeeEEEEccCCCeEEEEeC-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec-CCeeeeeecCCCCeEEEeCC---
Q 012994 109 QGAVRGLTVSTDGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK-NSFWAVDHQWEGDLFATAGA--- 183 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--- 183 (452)
..+|++++|+|||+.||+++. ||+++||++..+.. ....... ..+..+.|+|+ .++++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-------------~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-------------VKLNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------EECCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------EeeecccccccccccCCCC-eEEEEeccCCC
Confidence 457999999999999999887 99999999854422 2222223 46778899999 66665432
Q ss_pred --eEEEEeCCC--CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCc
Q 012994 184 --QVDIWNHNR--SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM 259 (452)
Q Consensus 184 --~i~i~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (452)
...+|.+.. ......+... ..+...+|+|++..++++.+.++.+.+||+.+++......... ..+.|+|++..
T Consensus 87 ~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~ 163 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQRLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDL 163 (582)
T ss_dssp SCCEEEEEEETTSTTCCEECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTE
T ss_pred CcceEEEEEeccCCCccccccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCE
Confidence 345554432 2222233322 2344668888886666666666666799998876544443333 88999999998
Q ss_pred eEEeecC---CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCceeeeeccCCcCc
Q 012994 260 NFTAANE---DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDR--TIRIFQYNGGRSREIYHTKRMQR 334 (452)
Q Consensus 260 ~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~ 334 (452)
++.++.. ...+++||+.+.... .+..|...+..++|||||+.|+++..+| .|++||+.+++.. .+ ..+...
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~ 239 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL-ELPSKD 239 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC-CCSCSH
T ss_pred EEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec-cCCCcC
Confidence 6655433 267999998765432 4457888899999999999999888888 8999999988876 33 334355
Q ss_pred EEEEE--------EcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 335 VFCVK--------FSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 335 v~~~~--------~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
+..++ |+|||.++++++.||.+++|++ |+.+.
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~ 279 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE 279 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec
Confidence 55566 9999999999999999999999 66553
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=8.7e-20 Score=163.75 Aligned_cols=259 Identities=8% Similarity=0.085 Sum_probs=179.4
Q ss_pred hHHHhhhhhcccccccccccc-ccEEEEEeCCCCcce-EEEeeCCCcEEEEeCCCCceEEEeecCC------CCeeEEEE
Q 012994 46 TAAKLEKIFARPFIGALDGHR-DGISCMAKNPNYLKG-FFSGSMDGDIRLWDIANRRTVCQYSGHQ------GAVRGLTV 117 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~l~~h~-~~V~~~~~~~~~~~~-l~tg~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~ 117 (452)
..+.+|+..+...+..+..+. ..+..++|+|++ ++ ++++..++.|.+||+.+++.+..+..+. ..+.+++|
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDN-RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI 99 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTS-SEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCceeEECCCC-CEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE
Confidence 345566666666666665443 257899999998 64 4566678999999999998877776332 23789999
Q ss_pred ccCCCeEEEEeCC------------CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeE
Q 012994 118 STDGRILVSCGTD------------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQV 185 (452)
Q Consensus 118 ~~~~~~l~s~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 185 (452)
+|+|++|++++.+ +.|.+||+.+++.. ...........+.++++++++. +++.++.+
T Consensus 100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~i 168 (349)
T 1jmx_B 100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----------KPVRTFPMPRQVYLMRAADDGS-LYVAGPDI 168 (349)
T ss_dssp CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----------CCSEEEECCSSCCCEEECTTSC-EEEESSSE
T ss_pred CCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc----------ceeeeccCCCcccceeECCCCc-EEEccCcE
Confidence 9999999998865 89999999875432 2223334445678889999999 55567789
Q ss_pred EEEeCCCCCcceecccCCC------------------------ceEEEEECCCCCc----------EEEEEecCCeEEEE
Q 012994 186 DIWNHNRSQPINSFQWGTD------------------------TVISVRFNPAEPN----------VLATTASDRSITLY 231 (452)
Q Consensus 186 ~i~d~~~~~~~~~~~~~~~------------------------~i~~~~~~~~~~~----------~l~~~~~dg~i~i~ 231 (452)
.+||..+++.+..+..+.. ...++++++++.. ++.....++.+.+|
T Consensus 169 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
T 1jmx_B 169 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 248 (349)
T ss_dssp EEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEE
T ss_pred EEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEec
Confidence 9999999887766543320 3344566543311 11123334455555
Q ss_pred EccCCCCceEEEeecccceEEEcc-CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC
Q 012994 232 DLRMSSPARKVIMRTKSNSISWNP-MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD 310 (452)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d 310 (452)
++.. .......++++| ++..++++ ++.+.+||+.+......... ...+.+++|+|+|++|++++.+
T Consensus 249 ~~~~--------~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~ 315 (349)
T 1jmx_B 249 EFAD--------LTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTF 315 (349)
T ss_dssp EEEE--------CSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBS
T ss_pred cccc--------CCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCC
Confidence 5422 234556888999 88776555 88999999987654443332 2357789999999999988889
Q ss_pred CeEEEEECCCCceeeeecc
Q 012994 311 RTIRIFQYNGGRSREIYHT 329 (452)
Q Consensus 311 g~i~iwd~~~~~~~~~~~~ 329 (452)
+.|.+||+.+++.+..+..
T Consensus 316 ~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 316 NDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp SEEEEEETTTTEEEEEEEC
T ss_pred CeEEEEeccccceeeeeec
Confidence 9999999999887665543
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=4e-20 Score=182.46 Aligned_cols=276 Identities=9% Similarity=0.102 Sum_probs=182.5
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCC-----eeEEEEccCCCeEEEEeCC---------CcE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-----VRGLTVSTDGRILVSCGTD---------CTV 133 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~~~d---------g~v 133 (452)
...+++|+|++ .+++++ ||+|++||+.+++....+.+|... ...+.|||||++|+.++.+ +.+
T Consensus 18 ~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 18 KLYSLRWISDH-EYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCEEECSSS-EEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred cccccEECCCC-cEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 45689999998 888886 999999999999987777777643 2347899999999998876 566
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecc-cCCCce-----
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQ-WGTDTV----- 206 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~-~~~~~i----- 206 (452)
.+||+.+++..... .....+...+|+|||+.++... ++|.+|+..+++..+... ++...+
T Consensus 95 ~~~d~~~~~~~~l~-------------~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~ 161 (740)
T 4a5s_A 95 DIYDLNKRQLITEE-------------RIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGIT 161 (740)
T ss_dssp EEEETTTTEECCSS-------------CCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBC
T ss_pred EEEECCCCcEEEcc-------------cCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcc
Confidence 79999988643211 1234577899999999888765 689999998877544222 222222
Q ss_pred ------------EEEEECCCCCcEEEEEe-cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEE
Q 012994 207 ------------ISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 207 ------------~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
..+.|+|+|. .|+.++ .++.+.+|++....... ........+.+...+.. .....+++|
T Consensus 162 ~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~-----~~~~~l~v~ 233 (740)
T 4a5s_A 162 DWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAV-----NPTVKFFVV 233 (740)
T ss_dssp CHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSC-----CCEEEEEEE
T ss_pred cccccchhcCCCcceEECCCCC-EEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcCc-----CCeeEEEEE
Confidence 3589999994 555554 45558888875332211 00111223334443322 222368899
Q ss_pred eCCC---cc--ccceeee-----CcccceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCc----eee---eeccCCc
Q 012994 274 DSRK---LD--EAKCVHM-----GHESAVMDIDYSPTGREFVTGSY----DRTIRIFQYNGGR----SRE---IYHTKRM 332 (452)
Q Consensus 274 d~~~---~~--~~~~~~~-----~~~~~v~~~~~s~~g~~l~s~~~----dg~i~iwd~~~~~----~~~---~~~~~~~ 332 (452)
|+.+ .. ....+.. +|...+..++|||||+.++.... +..|++||+.+++ +.. .....+.
T Consensus 234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 9887 52 1222221 37778999999999997665533 3479999999887 221 1112333
Q ss_pred CcEE-----EEEEcCCCCEEE-EeeC-C--CcEEEeeccccccc
Q 012994 333 QRVF-----CVKFSCDASYVI-SGSD-D--TNLRLWKAKASEQL 367 (452)
Q Consensus 333 ~~v~-----~~~~s~~~~~l~-s~~~-d--g~i~iw~~~~~~~~ 367 (452)
..+. ..+|+|||+.|+ ..+. + ..|++|++.+++..
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence 3443 688999999876 5553 3 45788887765543
No 163
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.85 E-value=6.6e-19 Score=158.03 Aligned_cols=269 Identities=10% Similarity=0.081 Sum_probs=184.4
Q ss_pred CCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC----------CCcEEEEeCCCCCCCCCCCCCCCCCCC
Q 012994 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT----------DCTVKLWNVPVATLTDSDDSTDNSSEP 156 (452)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~ 156 (452)
.|+.|.+||..+++.+..+..+..+ .++|+||+++|++++. ++.|.+||..+.+..........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~---- 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK---- 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT----
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc----
Confidence 4789999999999998888776655 8999999999998863 67899999876643221110000
Q ss_pred eeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCccee-cccCCCceEEEEECCCCCcEEEEEecCCeEEEE
Q 012994 157 LAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINS-FQWGTDTVISVRFNPAEPNVLATTASDRSITLY 231 (452)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~ 231 (452)
..........++++|+|+++++++ +.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|
T Consensus 103 --~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v 178 (361)
T 2oiz_A 103 --RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTI 178 (361)
T ss_dssp --BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEE
T ss_pred --ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEE
Confidence 000123456789999999888753 4699999999988777 6542 223366788776788899999999999
Q ss_pred EccCCCCce-EEE------eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc-eeee--C----c----ccceE
Q 012994 232 DLRMSSPAR-KVI------MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-CVHM--G----H----ESAVM 293 (452)
Q Consensus 232 d~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~--~----~----~~~v~ 293 (452)
++....... ... .......+...+++..++ ..+.++.++++|........ .... . + .....
T Consensus 179 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~ 257 (361)
T 2oiz_A 179 NLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAH-FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYN 257 (361)
T ss_dssp EECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEE-EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSS
T ss_pred EECCCCcEeeeccccceEcCCCCceEEEecccCCEEE-EEeCCCeEEEEEecCCCceecccccccCccccccccccCCee
Confidence 986533222 111 011111223345554443 34467889999986432111 0000 0 0 01112
Q ss_pred EEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 294 DIDYSPTGREFVTGSY-----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.++|+|+++.++++.. ++.|.+||+.+++.+..+..+. +.+++|+|||++|++++. +.|.+||..
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD---ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT---CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC---eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 3789999888776543 3589999999999888876653 899999999999998887 999999999
Q ss_pred cc--cccccC
Q 012994 363 AS--EQLGVL 370 (452)
Q Consensus 363 ~~--~~~~~~ 370 (452)
++ +.+..+
T Consensus 334 t~~l~~~~~i 343 (361)
T 2oiz_A 334 QPEPKLLRTI 343 (361)
T ss_dssp SSSCEEEEEE
T ss_pred CCcceeeEEe
Confidence 99 887665
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.84 E-value=4e-18 Score=151.27 Aligned_cols=254 Identities=14% Similarity=0.119 Sum_probs=181.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCC------------------------CcEEEEeCCCCceEEEee-cCCCCeeEEEEccC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMD------------------------GDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTD 120 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~d------------------------g~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~ 120 (452)
-+.+.+++++|+| +++++.+.+ +.|.+||..+++.+..+. ++-.....++++++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4679999999998 888887777 479999998888876654 34467899999999
Q ss_pred CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc
Q 012994 121 GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ 200 (452)
Q Consensus 121 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 200 (452)
|+++++...++.|.+||...... .+...... +. ...-.
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~------------~~~~~~~~-----------------------------~~-~g~~~ 139 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEG------------PLLILGRS-----------------------------MQ-PGSDQ 139 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSC------------CSEEESBT-----------------------------TB-CCCST
T ss_pred CCEEEEECCCCEEEEEeCCCCeE------------EEEEeccc-----------------------------CC-CCCCc
Confidence 99888888889999999743210 00000000 00 00001
Q ss_pred cCCCceEEEEECCCCCcEEEEEe-cCCeEEEEEccCCCCceEEEee-----------cccceEEEccCCCceEEeecCCC
Q 012994 201 WGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPARKVIMR-----------TKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 201 ~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
.+...+..++++|+++.++++.+ .++.|++|| ..+.....+... ..+..++++|++..++++...++
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 23456889999994447887876 689999999 445555444322 12678999999888899999999
Q ss_pred eEEEEeCCCccccceee-eCcccceEEEEEcC------CCCEEEEEeCCCeEEEEECCCCceeeeec--cCCcCcEEEEE
Q 012994 269 NCYSYDSRKLDEAKCVH-MGHESAVMDIDYSP------TGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVK 339 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~-~~~~~~v~~~~~s~------~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~ 339 (452)
.|.+||..+........ ..+...+.+++++| +|+..++...+..|++||+.+++.+..+. ..+...+..++
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia 298 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV 298 (329)
T ss_dssp EEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred EEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence 99999987443332221 24556788999999 33333333445689999999998887763 23446799999
Q ss_pred EcCCCCEEEEeeCCCcEEEeeccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
++|+|.++++...++.|++|++..
T Consensus 299 ~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 299 ASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCc
Confidence 999998888888899999999864
No 165
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=5.2e-19 Score=162.53 Aligned_cols=196 Identities=12% Similarity=0.056 Sum_probs=139.7
Q ss_pred ccccEEEEEeCCCCcceEE----EeeCCCcEEEEeCCCC--------c---eEEEeecCCCCeeEEEEccC-CCeEEEEe
Q 012994 65 HRDGISCMAKNPNYLKGFF----SGSMDGDIRLWDIANR--------R---TVCQYSGHQGAVRGLTVSTD-GRILVSCG 128 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~----tg~~dg~i~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~~~-~~~l~s~~ 128 (452)
|.+.|++++|+|++ ++|+ +|+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++
T Consensus 91 ~~~~v~~l~~spdg-~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSCDN-LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECTTS-CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcCCC-CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 56789999999998 8888 8899999999998654 2 14556779999999999997 78999999
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccC----
Q 012994 129 TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWG---- 202 (452)
Q Consensus 129 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~---- 202 (452)
.||+|++||+.++. .......+...+.+++|+|+|.++++++ +.|++||.+ ++....+..+
T Consensus 170 ~Dg~v~iwD~~~~~------------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 170 ADGSIAVLQVTETV------------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp TTSCEEEEEESSSE------------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred CCCeEEEEEcCCCc------------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 99999999997652 1222334567899999999999999886 679999998 5555444332
Q ss_pred ---CCceEEEEECCCCCcEE-EEEecCCe------EEEEEccCCCCc--eEEE-eec----------ccceEEEccCCCc
Q 012994 203 ---TDTVISVRFNPAEPNVL-ATTASDRS------ITLYDLRMSSPA--RKVI-MRT----------KSNSISWNPMEPM 259 (452)
Q Consensus 203 ---~~~i~~~~~~~~~~~~l-~~~~~dg~------i~i~d~~~~~~~--~~~~-~~~----------~~~~~~~~~~~~~ 259 (452)
...+.+++|++++ .++ +.+..||. +++||++..... ..+. ... ....+.+.++...
T Consensus 237 ~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l 315 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDL 315 (434)
T ss_dssp TTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTE
T ss_pred CCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCE
Confidence 2389999999976 344 33444433 899999865321 1111 110 1112333466666
Q ss_pred eEEeecCCCeEEEEeC
Q 012994 260 NFTAANEDCNCYSYDS 275 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~ 275 (452)
++++.+....+.++..
T Consensus 316 ~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 316 VLAASAASTEVSILAR 331 (434)
T ss_dssp EEEEETTCSBCEEEEE
T ss_pred EEEecCCCCceeEEEe
Confidence 6777666666666553
No 166
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.83 E-value=7.2e-18 Score=150.19 Aligned_cols=269 Identities=10% Similarity=0.032 Sum_probs=189.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
...|.+++|++++ ..++..+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..++....
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 5 QQDLPTLFYSGKS-NSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp -CCCCBCCSCGGG-GCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred ccccceeeecCCc-cceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 3457788999987 777777888999999 355666777777888999999999987888889999999987653211
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC------CeEEEEeCCCCCcceecc--cCCCceEEEEECCCCCc
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------AQVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPN 217 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 217 (452)
........+..+++++++.++++.. +.|.+||..++.....+. .....+.+++++|++ +
T Consensus 81 ------------~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~ 147 (333)
T 2dg1_A 81 ------------PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-G 147 (333)
T ss_dssp ------------EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-C
T ss_pred ------------EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-C
Confidence 1112346788999999999888765 369999988876543332 234578999999988 6
Q ss_pred EEEEEec------CCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce--------
Q 012994 218 VLATTAS------DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC-------- 283 (452)
Q Consensus 218 ~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-------- 283 (452)
++++... .+.|..+|..+...............++|+|++..++++...++.|++||.........
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~ 227 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY 227 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE
Confidence 6665543 35566666554443332233345678999999988888888888999999853211110
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC-----cCcEEEEEEcCCCCEEEEeeCC
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR-----MQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d 353 (452)
...++ ..+..++++++|+++++...++.|.+||.. ++....+.... ...+.+++|+||++.|+.++.+
T Consensus 228 ~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 228 YFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 11122 467889999999988888788999999984 55544443322 1158899999998777665554
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.9e-17 Score=144.06 Aligned_cols=242 Identities=14% Similarity=0.192 Sum_probs=171.4
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee------cCCCCeeEEEE-ccCCCeEEEEeC-CCcEE
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS------GHQGAVRGLTV-STDGRILVSCGT-DCTVK 134 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~-~~~~~~l~s~~~-dg~v~ 134 (452)
.+|-..+.++++++++ .++++...++.|.+||.. ++.+..+. +|...+.++++ .+++.++++... ++.|.
T Consensus 26 ~g~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TTCBSCEEEEEECTTC-CEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CCccCCCceEEECCCC-CEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 4566789999999998 888888889999999986 66665553 24457889999 467766665533 78899
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc-cCCCceEEEEECC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-WGTDTVISVRFNP 213 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~ 213 (452)
+||. ++.. +..+. .+...+.++++.|
T Consensus 104 ~~d~-~g~~----------------------------------------------------~~~~~~~~~~~~~~i~~~~ 130 (286)
T 1q7f_A 104 IYNQ-YGQF----------------------------------------------------VRKFGATILQHPRGVTVDN 130 (286)
T ss_dssp EECT-TSCE----------------------------------------------------EEEECTTTCSCEEEEEECT
T ss_pred EECC-CCcE----------------------------------------------------EEEecCccCCCceEEEEeC
Confidence 9984 2311 11111 1234678899999
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee--Cc
Q 012994 214 AEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM--GH 288 (452)
Q Consensus 214 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~ 288 (452)
++ +++++...++.|.+||.. +.....+... ..+..+++++++. ++++...++.|++||.... ....+. ++
T Consensus 131 ~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~~~~~g~ 205 (286)
T 1q7f_A 131 KG-RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ--YLRQIGGEGI 205 (286)
T ss_dssp TS-CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC--EEEEESCTTT
T ss_pred CC-CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC--EEEEEccCCc
Confidence 88 677777778999999964 3444444321 2457889999876 6777777899999997542 222222 22
Q ss_pred ccceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCceeeeeccC-CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 289 ESAVMDIDYSPTGREFVTGSYDR-TIRIFQYNGGRSREIYHTK-RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 289 ~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
...+..++++++|+++++...++ .|.+||.. ++.+..+... ....+.+++++|+|+++++ +.|+.|++|++.....
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 35788999999999888888776 99999965 5554444332 2234789999999987777 5799999999876544
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=2.4e-18 Score=155.23 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=165.9
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC-CCceEEEeec-CCCCeeEEEEccCCCe--EEEEe------------
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA-NRRTVCQYSG-HQGAVRGLTVSTDGRI--LVSCG------------ 128 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~-~~~~~~~~~~-h~~~v~~l~~~~~~~~--l~s~~------------ 128 (452)
+...+..++|+|++ ++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 34468899999999 888888887 99999997 7766443321 1134667999999994 55553
Q ss_pred -CCCcEEEEeCCC-CCCCCCCCCCCCCCCCeeEE--EecCCeeeeeecCCCCeEEEeC---CeEEEEeCC-CCCcc--ee
Q 012994 129 -TDCTVKLWNVPV-ATLTDSDDSTDNSSEPLAVY--VWKNSFWAVDHQWEGDLFATAG---AQVDIWNHN-RSQPI--NS 198 (452)
Q Consensus 129 -~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~-~~~~~--~~ 198 (452)
.+|.+.+|++.. +... ...... .....+..++++|+|+.+++++ +.|.+|++. +++.. ..
T Consensus 116 ~~~g~v~v~~~~~~g~~~----------~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLE----------KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp SSCCEEEEEEECTTCCEE----------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred cCCceEEEEccCCCCcCc----------ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeee
Confidence 689999999963 3211 011111 1235678899999999777653 479999998 66543 22
Q ss_pred cc--cCCCceEEEEECCCCCcEEEEEe-cCCeEEEEEccC--CCCce---EEEe-e------c-------ccceEE-Ecc
Q 012994 199 FQ--WGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRM--SSPAR---KVIM-R------T-------KSNSIS-WNP 255 (452)
Q Consensus 199 ~~--~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~---~~~~-~------~-------~~~~~~-~~~ 255 (452)
+. .+...+..++|+|++. ++++++ .++.|.+|++.. ++... .+.. . . ....++ |+|
T Consensus 186 ~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp EECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred EecCCCCCCCCEeEECCCCC-EEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 33 2346689999999984 555554 578999998763 33221 1221 1 1 356788 999
Q ss_pred CCCceEEeecCCC-----eEEEEeCCCccccce---eeeCcccceEEEEEcC---CCCEEEEEeCC-CeEEEEECCCC
Q 012994 256 MEPMNFTAANEDC-----NCYSYDSRKLDEAKC---VHMGHESAVMDIDYSP---TGREFVTGSYD-RTIRIFQYNGG 321 (452)
Q Consensus 256 ~~~~~~~~~~~~~-----~i~~~d~~~~~~~~~---~~~~~~~~v~~~~~s~---~g~~l~s~~~d-g~i~iwd~~~~ 321 (452)
+++.++++..... .+.+|++........ ....+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9998776654443 899999863222222 1223444567899999 89999998864 89999998765
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.82 E-value=6.7e-19 Score=160.87 Aligned_cols=287 Identities=10% Similarity=0.006 Sum_probs=177.1
Q ss_pred cEEEEEeCCCCcceEEEeeC-C--CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSM-D--GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
.+.+++|+|+| ++|+.... + ..|.+||+.+++......++......+.|+|||++|+.++.++.|.+||+.++...
T Consensus 37 ~~~~~~~SpdG-~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDG-KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCC-CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 37788999999 77665543 2 46888999888765443333333334889999999999999999999999876432
Q ss_pred CCCCCCCCCCCCeeEEEecCC-------eeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCCCceEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNS-------FWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTDTVISVR 210 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~ 210 (452)
............-........ .....++|++..++.. ...|.+||+.+++..... .+...+..+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 211110000000000000000 0014567888776643 236999999888765444 3566788999
Q ss_pred ECC-CCCcEEEEEecC------CeEEEEEccCCCCceEEEe--ecccceEEEccCCCceEEeecCC----CeEEEEeCCC
Q 012994 211 FNP-AEPNVLATTASD------RSITLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFTAANED----CNCYSYDSRK 277 (452)
Q Consensus 211 ~~~-~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d~~~ 277 (452)
|+| ++ ..|+..+.+ ..|.+||+........... ...+..+.|+|++..++++...+ +.+++||+.+
T Consensus 195 ~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 195 YRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp EETTEE-EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred ECCCCC-CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 999 56 545444433 3688888865543221111 11345679999999876665432 4499999876
Q ss_pred ccccceeeeCcccceEEEEEcC-CCCEEEEEe----------------CCCeEEEEECCCCceeeeeccCCcC-------
Q 012994 278 LDEAKCVHMGHESAVMDIDYSP-TGREFVTGS----------------YDRTIRIFQYNGGRSREIYHTKRMQ------- 333 (452)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~------- 333 (452)
....... .. . ... +.|+| +|+++++++ .++.|++||+.++......... ..
T Consensus 274 g~~~~l~-~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~ 348 (396)
T 3c5m_A 274 LENEEVM-VM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHS-TSWDVLDGD 348 (396)
T ss_dssp CCEEEEE-EC-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECC-CCCCCBTTB
T ss_pred CCeEEee-eC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCC-Ccccccccc
Confidence 5432211 11 1 122 88999 999888764 3478999999887754332221 11
Q ss_pred ---cEEEEEEcCCCCEEEEeeC-CCcEEEeecc
Q 012994 334 ---RVFCVKFSCDASYVISGSD-DTNLRLWKAK 362 (452)
Q Consensus 334 ---~v~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 362 (452)
.+..++|+|||+.|+.++. ++...+|.+.
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2566799999998876654 5666666554
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.81 E-value=4.9e-17 Score=145.72 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=175.0
Q ss_pred ccEEEEEeCCCCcceEEEe---------eCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC---Cc--
Q 012994 67 DGISCMAKNPNYLKGFFSG---------SMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD---CT-- 132 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d---g~-- 132 (452)
..+..+++ +| +.++.. +.++.|.+||+.+++.. .+ ..+..++|+|||++|+.++.+ +.
T Consensus 15 ~~~~~~~~--dG-~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 15 AYLSDPRT--KG-ELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp CEEEEEEE--ET-TEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EEcccceE--CC-cEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 45677777 77 555543 23678999999887653 33 468899999999999987754 33
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-----------------------------C
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------------------------A 183 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~ 183 (452)
|.+||+.++. ......... +..+.|+|+|..++... .
T Consensus 87 l~~~~~~~g~-------------~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 87 IWVADLETLS-------------SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp EEEEETTTTE-------------EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEE
T ss_pred EEEEECCCCc-------------eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 7777876542 223333334 88899999999777653 3
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC-------eEEEEEccCCCCceEEEeecccceEEEccC
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR-------SITLYDLRMSSPARKVIMRTKSNSISWNPM 256 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 256 (452)
.|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++ ...+|.+.++ ....+... .....++|+
T Consensus 153 ~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~--~~~~~~spd 225 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEK--VSFYAVDSD 225 (347)
T ss_dssp EEEEEETTTTEEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEE--ESEEEEEEC
T ss_pred eEEEEECCCCeEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-ceEEeccC--cceeeECCC
Confidence 588999988876444444 3 78889999987 666665542 4455555533 33333333 333344899
Q ss_pred CCceEEeecCC-------CeEEEEeCCCccccceeeeCcccceEE-EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec
Q 012994 257 EPMNFTAANED-------CNCYSYDSRKLDEAKCVHMGHESAVMD-IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 257 ~~~~~~~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~~v~~-~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 328 (452)
+..+++.+... ..+++|| . .........+...+.. +.|+ +| ++++++.++.+++| +.+++.....
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~- 298 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA- 298 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-
T ss_pred CCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-
Confidence 98877666443 5788888 2 2233333456677886 9999 88 89999999999999 8766554333
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeCCCcE-EEeecc
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSDDTNL-RLWKAK 362 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i-~iw~~~ 362 (452)
.+ ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 299 ~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 KG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred cC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 22 47799999999 677777777665 777765
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.80 E-value=3e-17 Score=147.20 Aligned_cols=273 Identities=10% Similarity=0.106 Sum_probs=180.3
Q ss_pred HhhhhhccccccccccccccEEEEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecC------CCCe
Q 012994 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH------QGAV 112 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h------~~~v 112 (452)
.+++..+..++..+..+..+ .++|+|++ ++++++. .++.|.+||..+++.+..+... ....
T Consensus 34 ~v~D~~t~~~~~~i~~g~~p--~i~~spdg-~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p 110 (361)
T 2oiz_A 34 HVYDYTNGKFLGMVPTAFNG--HVQVSNDG-KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYD 110 (361)
T ss_dssp EEEETTTCCEEEEEECCEEE--EEEECTTS-SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCG
T ss_pred EEEECCCCeEEEEecCCCCC--ceEECCCC-CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCc
Confidence 34555566677777777666 89999999 8888775 3678999999999888877532 3457
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEEEeCCCCCCCCC-CCCCCCCCCCeeEEEecCCeeeeeecCCC-CeEEE--eCCeEE
Q 012994 113 RGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDS-DDSTDNSSEPLAVYVWKNSFWAVDHQWEG-DLFAT--AGAQVD 186 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~i~ 186 (452)
..++|+|||++|+++.. +++|.+||+.+++.... ... .....+.+.|++ ..+++ .+|.+.
T Consensus 111 ~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--------------~~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 111 GLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--------------AGCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp GGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--------------TTEEEEEECTTSSSEEEEEETTSSEE
T ss_pred ceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--------------CCcceeEEcCCCCeeEEEECCCCcEE
Confidence 78999999999998864 58999999987643221 110 111112334443 22222 235666
Q ss_pred EEeCCC-CCcc------eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce--EEEe-----------ec
Q 012994 187 IWNHNR-SQPI------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR--KVIM-----------RT 246 (452)
Q Consensus 187 i~d~~~-~~~~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~-----------~~ 246 (452)
+|+... ++.. ..+.....++ .+.+++++ ..++..+.++.|.++|+....... .+.. ..
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 676654 3322 1122222221 22334555 445566678999999987554321 1111 11
Q ss_pred ccceEEEccCCCceEEeec----------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEE
Q 012994 247 KSNSISWNPMEPMNFTAAN----------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF 316 (452)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iw 316 (452)
....++++|++..++++.. ....+.+||..+.+....+. .+. +.+++|+|||++|++++. +.|.+|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEE
Confidence 1223789999888877654 13589999998876655444 343 899999999999998887 999999
Q ss_pred ECCCC--ceeeeeccCCcCcEEEEEEcCCCC
Q 012994 317 QYNGG--RSREIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 317 d~~~~--~~~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
|..++ +.+..+... ......++++|+|+
T Consensus 331 D~~t~~l~~~~~i~~~-G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGA-AEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTS-CSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccC-CCCcEEEEecCCCC
Confidence 99999 777665322 25688899999986
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=2.9e-17 Score=160.49 Aligned_cols=291 Identities=10% Similarity=-0.044 Sum_probs=187.4
Q ss_pred cccccccccEEEEEeCCCCcceEEEe--eCCCcEEEEeCCCCceEEEeecCCCCee---------EEEEc--cCCCe-EE
Q 012994 60 GALDGHRDGISCMAKNPNYLKGFFSG--SMDGDIRLWDIANRRTVCQYSGHQGAVR---------GLTVS--TDGRI-LV 125 (452)
Q Consensus 60 ~~l~~h~~~V~~~~~~~~~~~~l~tg--~~dg~i~iwd~~~~~~~~~~~~h~~~v~---------~l~~~--~~~~~-l~ 125 (452)
..+.+|...|..++|++++ -++++. +.++...||....+.....+..|...+. ...|+ |||+. |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3467799999999999886 666666 5688999999655555666776766666 66676 99998 77
Q ss_pred EEeC-CCcEEEEeCC--C-CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC------------CeEEEEe
Q 012994 126 SCGT-DCTVKLWNVP--V-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------------AQVDIWN 189 (452)
Q Consensus 126 s~~~-dg~v~iwd~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~i~d 189 (452)
.++. +..|.+|++. . +.... +..... . .....+..++|+|+|+.+++.. .+|.+||
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~-l~~~~~--~-----~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRP-LTPVSA--V-----GGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEE-CSCCCC--S-----TTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCCCEe-ccCCcc--C-----CCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 6554 5566666664 2 22111 000000 0 0123456889999999887764 2589999
Q ss_pred CCC------CCcceecc-cCCCceEEEEECCCCCcEEEEEecC--------CeEEEEEcc-CCC--CceEEEe--ecccc
Q 012994 190 HNR------SQPINSFQ-WGTDTVISVRFNPAEPNVLATTASD--------RSITLYDLR-MSS--PARKVIM--RTKSN 249 (452)
Q Consensus 190 ~~~------~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~-~~~--~~~~~~~--~~~~~ 249 (452)
+.+ ++ ...+. .+...+..++|+|++ +.|+.++.+ ..|.+||+. ++. ....+.. .....
T Consensus 168 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 168 LDGSAAADRSA-VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp TTSTTTTCGGG-SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred CCCCccccCCc-eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 988 44 34444 556778889999999 566655544 379999998 451 2333332 35667
Q ss_pred eEEEccCCCceEEeecCCC--eEEEEeCCCccccceeeeCcccc--------eEEEEEcCCCCEEEEEeCCCeEEEE--E
Q 012994 250 SISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCVHMGHESA--------VMDIDYSPTGREFVTGSYDRTIRIF--Q 317 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~l~s~~~dg~i~iw--d 317 (452)
.+.|+|++. +++++..++ .++.||...... ..+...+... +..++|+|+++++++++. +.++|| |
T Consensus 246 ~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 246 QAEWAPDGS-LIVATDRTGWWNLHRVDPATGAA-TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEEECTTSC-EEEEECTTSSCEEEEECTTTCCE-EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred ceEECCCCe-EEEEECCCCCeEEEEEECCCCce-eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 899999999 677777777 777777644321 2222222221 567899999999999998 999999 6
Q ss_pred CCCCceeeeeccCCcCcEEEE-EEcCCCCEEEEeeCCC--cEEEeecccccc
Q 012994 318 YNGGRSREIYHTKRMQRVFCV-KFSCDASYVISGSDDT--NLRLWKAKASEQ 366 (452)
Q Consensus 318 ~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg--~i~iw~~~~~~~ 366 (452)
+.++.. ..+. .+...+..+ +++++.-++++++.+. .|.+|++.+++.
T Consensus 323 ~~~~~~-~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 323 PESGEL-VDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp TTTTEE-EECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCcE-EEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 665553 3332 233567766 5544333344455554 455556656654
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=4.4e-18 Score=155.03 Aligned_cols=275 Identities=10% Similarity=0.015 Sum_probs=184.5
Q ss_pred CCCCCchhhhhhhHhhh-hH--HHhhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe
Q 012994 29 DPNLRPQEKAVEYVRAL-TA--AKLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY 105 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~ 105 (452)
+|.++|.+..+.+.... .. +.+++...+.......+|...+.+++|+|+| +.|+.++.++.|++||+.+++....+
T Consensus 40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~~~~~~ 118 (388)
T 3pe7_A 40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLEENVVY 118 (388)
T ss_dssp SCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCcceeee
Confidence 48889988877766542 21 2334445556666667777777778999999 89999999999999999999877766
Q ss_pred ecCCCCeeEEEE--ccCCCeEEEE----------------------eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE
Q 012994 106 SGHQGAVRGLTV--STDGRILVSC----------------------GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV 161 (452)
Q Consensus 106 ~~h~~~v~~l~~--~~~~~~l~s~----------------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 161 (452)
..+...+....| ++++++++.. +.++.|.+||+.++. ......
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------------~~~l~~ 185 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------------STVILQ 185 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------------EEEEEE
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-------------eEEeec
Confidence 666665654444 8899988743 244679999987763 333445
Q ss_pred ecCCeeeeeecC-CCCeEEEeC--------CeEEEEeCCCCCcceecccCC-CceEEEEECCCCCcEEEEEecCC----e
Q 012994 162 WKNSFWAVDHQW-EGDLFATAG--------AQVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTASDR----S 227 (452)
Q Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg----~ 227 (452)
....+..+.|+| +|..++... ..+.++|...+.......... ..+....|+|++..+++++..++ .
T Consensus 186 ~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (388)
T 3pe7_A 186 ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRF 265 (388)
T ss_dssp ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEE
T ss_pred CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcce
Confidence 556678899999 998776543 157778877655433333222 35788999999955545444433 3
Q ss_pred EEEEEccCCCCceEEEeec------ccceEEEccCCCceEEee--------cCCCeEEEEeCCCccccceeeeCccc---
Q 012994 228 ITLYDLRMSSPARKVIMRT------KSNSISWNPMEPMNFTAA--------NEDCNCYSYDSRKLDEAKCVHMGHES--- 290 (452)
Q Consensus 228 i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--------~~~~~i~~~d~~~~~~~~~~~~~~~~--- 290 (452)
|.+||+.+++......... ......|+|++..++++. ..+..|++||....... .+..+..
T Consensus 266 l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~l~~~~~~~~ 343 (388)
T 3pe7_A 266 IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH--RVARHDTSWK 343 (388)
T ss_dssp EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE--EEEECCCCCC
T ss_pred EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE--EeccccCccc
Confidence 9999998877533322222 123347999999877654 55678999998875432 2233433
Q ss_pred --------ceEEEEEcCCCCEEEEEe-CCCeEEEEECC
Q 012994 291 --------AVMDIDYSPTGREFVTGS-YDRTIRIFQYN 319 (452)
Q Consensus 291 --------~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~ 319 (452)
.+.+++|+|||+.|+.++ .+|...+|.+.
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 477889999999887665 46766666543
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.79 E-value=6.8e-17 Score=143.09 Aligned_cols=266 Identities=8% Similarity=0.031 Sum_probs=188.6
Q ss_pred eCCCcEEEEeCCCCceEEEee------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 86 SMDGDIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 86 ~~dg~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
+.+++|.+||..+++....+. ........+.+. +++.+++...++.|.+||..+++.. ..
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~-------------~~ 79 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEV-------------GR 79 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEE-------------EE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEE-------------EE
Confidence 348899999999988765441 122346778775 3455556666799999999877442 22
Q ss_pred EEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCcceecccCC-----CceEEEEECCCCCcEEEEEe-cCCeEEEE
Q 012994 160 YVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQPINSFQWGT-----DTVISVRFNPAEPNVLATTA-SDRSITLY 231 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~-~dg~i~i~ 231 (452)
.........+++++++.++++. ++.|.+||..+++....+.... .....+++ ++..++++.. .++.|.++
T Consensus 80 i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~vi 157 (328)
T 3dsm_A 80 ITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKI 157 (328)
T ss_dssp EECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEE
T ss_pred cCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEE
Confidence 2334566788888888777776 4689999999988776665433 14556777 3435555554 48999999
Q ss_pred EccCCCCceEEEeecccceEEEccCCCceEEeecCC----------CeEEEEeCCCccccceeeeCcccceEEEEEcCCC
Q 012994 232 DLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED----------CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG 301 (452)
Q Consensus 232 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g 301 (452)
|+.+.+....+........+.++|++.. ++++..+ +.++++|..+.................++|+|++
T Consensus 158 D~~t~~~~~~i~~g~~p~~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 158 DTETDKVVDELTIGIQPTSLVMDKYNKM-WTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp ETTTTEEEEEEECSSCBCCCEECTTSEE-EEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred ECCCCeEEEEEEcCCCccceEEcCCCCE-EEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 9999988888877777788999998874 4444433 7899999987654433322223468899999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceeeee-ccCCcCcEEEEEEcC-CCCEEEEe----eCCCcEEEeecccccccccCC
Q 012994 302 REFVTGSYDRTIRIFQYNGGRSREIY-HTKRMQRVFCVKFSC-DASYVISG----SDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 302 ~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~s~----~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+.|+++.. .|.+||..+++..... ..........++++| ++.++++. ..++.|.+||.. ++.+..+.
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 99888765 8999999987754221 111135689999999 56666665 578999999998 88877664
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.78 E-value=1.6e-16 Score=156.18 Aligned_cols=262 Identities=8% Similarity=-0.030 Sum_probs=171.4
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCC-----cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDG-----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
+|+..+..++||||| ++||.++.++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.-
T Consensus 122 ~~~~~~~~~~~SPDg-~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~----- 194 (710)
T 2xdw_A 122 DGTVALRGYAFSEDG-EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQD----- 194 (710)
T ss_dssp TSCEEEEEEEECTTS-SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCS-----
T ss_pred CCCEEEEEEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcc-----
Confidence 455578999999999 7777655433 8999999999876543322 236789999999999998877540
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc--e--ecccCCCceEEEEECCC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI--N--SFQWGTDTVISVRFNPA 214 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~--~--~~~~~~~~i~~~~~~~~ 214 (452)
.... .. .. . ......|.+|++.+++.. . ....+...+..+.|+|+
T Consensus 195 --~~~~----~~---~~-------------------~---~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpD 243 (710)
T 2xdw_A 195 --GKSD----GT---ET-------------------S---TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDD 243 (710)
T ss_dssp --SCCS----SS---CC-------------------C---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred --cccc----cc---cc-------------------c---cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCC
Confidence 0000 00 00 0 000123555666554421 1 22223455788999999
Q ss_pred CCcEEEEEec-----CCeEEEEEccC------CC-CceEEEeecccceEEEccCCCceEEeecCC---CeEEEEeCCCcc
Q 012994 215 EPNVLATTAS-----DRSITLYDLRM------SS-PARKVIMRTKSNSISWNPMEPMNFTAANED---CNCYSYDSRKLD 279 (452)
Q Consensus 215 ~~~~l~~~~~-----dg~i~i~d~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~ 279 (452)
+. .|+.++. +..|.+||+.+ +. ....+..........|+|++..+++.+..+ ..|+.||+.+..
T Consensus 244 g~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 244 GR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CC-EEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 95 5544443 56899999986 43 345554444444456888888877776643 479999987654
Q ss_pred c-cceeeeCccc--ceEEEEEcCCCCEEEEEeCCCe--EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe----
Q 012994 280 E-AKCVHMGHES--AVMDIDYSPTGREFVTGSYDRT--IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG---- 350 (452)
Q Consensus 280 ~-~~~~~~~~~~--~v~~~~~s~~g~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~---- 350 (452)
. ....+..|.. .+..++|++++.++++...|+. |.+||+.+++....+..+ .+.+..+.++|++..|+..
T Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~~~v~~~~~s~d~~~l~~~~ss~ 401 (710)
T 2xdw_A 323 ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQKKDTEIFYQFTSF 401 (710)
T ss_dssp GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECCTTCSEEEEEEECS
T ss_pred cccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-CceEEEEecCCCCCEEEEEEeCC
Confidence 2 1123334433 6888999988888888888885 666787677655554433 4678999999998766532
Q ss_pred eCCCcEEEeeccccc
Q 012994 351 SDDTNLRLWKAKASE 365 (452)
Q Consensus 351 ~~dg~i~iw~~~~~~ 365 (452)
...+.|++||+.+++
T Consensus 402 ~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 402 LSPGIIYHCDLTKEE 416 (710)
T ss_dssp SCCCEEEEEETTSSS
T ss_pred CCCCEEEEEECCCCc
Confidence 235789999998877
No 176
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.78 E-value=2.3e-17 Score=162.80 Aligned_cols=332 Identities=13% Similarity=0.033 Sum_probs=207.0
Q ss_pred cCCCCCCchhhhhhhHhhhhHHHhhhhhcccccccccccccc-----EEEEEeCCCCcceEEEeeCC---------CcEE
Q 012994 27 NYDPNLRPQEKAVEYVRALTAAKLEKIFARPFIGALDGHRDG-----ISCMAKNPNYLKGFFSGSMD---------GDIR 92 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~~~~~~~~~~~l~tg~~d---------g~i~ 92 (452)
.+.+.+.|........ ...+.+|++.++.....+.+|... ...++||||| ++|+.++.+ +.+.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-QFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS-SEEEEEEEEEECSSSCEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC-CEEEEEECCeeeEEEccceEEE
Confidence 3445566665433221 456678888877777777777643 2447889999 888888775 6677
Q ss_pred EEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec---------
Q 012994 93 LWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK--------- 163 (452)
Q Consensus 93 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 163 (452)
+||+.+++.. .+..|.+.+...+|||||+.||.+. |+.|.+|++.++......... ..........
T Consensus 96 ~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g---~~~~~~~g~~~~v~~ee~~ 170 (740)
T 4a5s_A 96 IYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG---KEDIIYNGITDWVYEEEVF 170 (740)
T ss_dssp EEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC---BTTTEEESBCCHHHHHHTS
T ss_pred EEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCC---CccceecCcccccccchhc
Confidence 9999988754 4667788999999999999999885 689999999877543221100 0000111111
Q ss_pred CCeeeeeecCCCCeEEEeC---C-----------------------------------eEEEEeCCC---CC--cceecc
Q 012994 164 NSFWAVDHQWEGDLFATAG---A-----------------------------------QVDIWNHNR---SQ--PINSFQ 200 (452)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~---~-----------------------------------~i~i~d~~~---~~--~~~~~~ 200 (452)
.....+.|+|||+.++... + .+.+||+.+ ++ ....+.
T Consensus 171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQIT 250 (740)
T ss_dssp SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEEC
T ss_pred CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEec
Confidence 2234588999999888652 0 478899988 73 222332
Q ss_pred ------cCCCceEEEEECCCCCcEEEEEec----CCeEEEEEccCCC------CceEE-Ee--ecc-----cceEEEccC
Q 012994 201 ------WGTDTVISVRFNPAEPNVLATTAS----DRSITLYDLRMSS------PARKV-IM--RTK-----SNSISWNPM 256 (452)
Q Consensus 201 ------~~~~~i~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~------~~~~~-~~--~~~-----~~~~~~~~~ 256 (452)
.+...+..++|+|++ ++++.... +..|.+||+.+++ ....+ .. ... .....|+|+
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 267789999999998 55554432 3479999999877 12222 11 111 236789999
Q ss_pred CCceE-EeecCCC--eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC-----C--eEEEEECCCCceeee
Q 012994 257 EPMNF-TAANEDC--NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD-----R--TIRIFQYNGGRSREI 326 (452)
Q Consensus 257 ~~~~~-~~~~~~~--~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g--~i~iwd~~~~~~~~~ 326 (452)
+..++ .....+| .|++||....... .+......+..+.. +|++.|+..+.. + .|+..++..+.....
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~--~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~ 406 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDCT--FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTC 406 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSCE--ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEE
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCceE--ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCccee
Confidence 99876 4444444 6888887754322 22223344555432 446655443332 3 455555554433212
Q ss_pred ecc---CCcCcEEEEEEcCCCCEEEEeeCC---CcEEEeecccccccccC
Q 012994 327 YHT---KRMQRVFCVKFSCDASYVISGSDD---TNLRLWKAKASEQLGVL 370 (452)
Q Consensus 327 ~~~---~~~~~v~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~ 370 (452)
+.. ........+.|||++++++..... ..+.+++..+++.+..+
T Consensus 407 lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp SSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred eccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 221 123568899999999987654432 46788888777655444
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=1.8e-15 Score=142.49 Aligned_cols=317 Identities=9% Similarity=0.042 Sum_probs=211.8
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCC--CCceEEEeecCCCCeeEEEEc----cCCCe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIA--NRRTVCQYSGHQGAVRGLTVS----TDGRI 123 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~~~ 123 (452)
+++..+...+.++.. ...+..+.|+|+| +++++++.|+.|.+||+. +++.+..+... .....++|+ |||++
T Consensus 181 viD~~t~~v~~~i~~-g~~p~~v~~SpDG-r~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~ 257 (567)
T 1qks_A 181 LIDGSTYEIKTVLDT-GYAVHISRLSASG-RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKY 257 (567)
T ss_dssp EEETTTCCEEEEEEC-SSCEEEEEECTTS-CEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTE
T ss_pred EEECCCCeEEEEEeC-CCCccceEECCCC-CEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCE
Confidence 344445555655543 2356799999999 899999999999999995 77888887753 346789999 69998
Q ss_pred EEEEeC-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe---CCeEEEEeCCCCCcceec
Q 012994 124 LVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQPINSF 199 (452)
Q Consensus 124 l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~~~ 199 (452)
+++++. +++|.++|..+.+.+............ ..+.....+..+..++++..++.. +|.|.++|....+.+...
T Consensus 258 l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~-~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 258 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECCEECTTT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEecccccccc-ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence 887765 599999998776544322211000000 000112245567777776665554 367999998775432211
Q ss_pred c-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-eccc---ceEE-EccCCCceEEeec-CCCeEEE
Q 012994 200 Q-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKS---NSIS-WNPMEPMNFTAAN-EDCNCYS 272 (452)
Q Consensus 200 ~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~---~~~~-~~~~~~~~~~~~~-~~~~i~~ 272 (452)
. .......++.|+|++..++++...++.|.++|+.+++....+.. .... .... +.|++..+++++. .++.|.+
T Consensus 337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsv 416 (567)
T 1qks_A 337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVAL 416 (567)
T ss_dssp EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEE
Confidence 1 12345678899999966666666789999999999887776665 2222 2333 4777666666654 5689999
Q ss_pred EeCCC-------ccccceeeeCcccceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCC-----cee-eeecc---
Q 012994 273 YDSRK-------LDEAKCVHMGHESAVMDIDYSPTGREFVTGSY-------DRTIRIFQYNGG-----RSR-EIYHT--- 329 (452)
Q Consensus 273 ~d~~~-------~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-------dg~i~iwd~~~~-----~~~-~~~~~--- 329 (452)
+|... .+.. .........-..+..+|++++|.+... .+.|.++|+.+. ... ..+..
T Consensus 417 id~~~~~~~~~~~kvv-~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~ 495 (567)
T 1qks_A 417 IGTDPEGHPDNAWKIL-DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW 495 (567)
T ss_dssp EECCTTTCTTTBTSEE-EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH
T ss_pred ecCCCCCCccccCEEE-EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc
Confidence 99876 2222 222222233345778999999888663 358999999876 211 22211
Q ss_pred ----CCcCcEEEEEEcCCCCEEEEee-----CCCcEEEeecccccccccCC
Q 012994 330 ----KRMQRVFCVKFSCDASYVISGS-----DDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 330 ----~~~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 371 (452)
.....+..+.|+|+|+++..+. .++.|.|+|..+++++..+.
T Consensus 496 ~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 496 AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 1125789999999999877653 37899999999999887765
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.77 E-value=1.6e-15 Score=142.73 Aligned_cols=269 Identities=14% Similarity=0.103 Sum_probs=197.4
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC--CCCCCCCCCCCCCCCCCe
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP--VATLTDSDDSTDNSSEPL 157 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~~~ 157 (452)
.++++...++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+. +. ...
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-------------~~v 233 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-------------TTV 233 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-------------CEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCC-------------cEe
Confidence 5667778899999999999999888874 4467899999999999999999999999995 33 223
Q ss_pred eEEEecCCeeeeeec----CCCCeEEEeC---CeEEEEeCCCCCcceecccC-----------CCceEEEEECCCCCcEE
Q 012994 158 AVYVWKNSFWAVDHQ----WEGDLFATAG---AQVDIWNHNRSQPINSFQWG-----------TDTVISVRFNPAEPNVL 219 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~----~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~-----------~~~i~~~~~~~~~~~~l 219 (452)
...........++++ |+|+++++++ +.+.++|..+.+.+..+... ...+..+..+++++.++
T Consensus 234 ~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 234 AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 333334456788999 6999888876 68999999999888766532 12577888899887777
Q ss_pred EEEecCCeEEEEEccCCCCceE--EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee----CcccceE
Q 012994 220 ATTASDRSITLYDLRMSSPARK--VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM----GHESAVM 293 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~----~~~~~v~ 293 (452)
+....+|.|.++|......... +........+.|+|++++++++...++.|.++|..+......... .|.+.-.
T Consensus 314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~ 393 (567)
T 1qks_A 314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGA 393 (567)
T ss_dssp EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCE
T ss_pred EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccce
Confidence 7888889999999876543322 223344567889999999999999999999999998754443333 2322121
Q ss_pred EEEEcCCCC-EEEEEe-CCCeEEEEECCC-------CceeeeeccCCcCcEEEEEEcCCCCEEEEeeC-------CCcEE
Q 012994 294 DIDYSPTGR-EFVTGS-YDRTIRIFQYNG-------GRSREIYHTKRMQRVFCVKFSCDASYVISGSD-------DTNLR 357 (452)
Q Consensus 294 ~~~~s~~g~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~i~ 357 (452)
.+ ++|++. ..+++. .++.|.++|..+ .+.+..+.... ..-..+..+|++++|.+... .+.|.
T Consensus 394 ~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g-~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 394 NF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG-GGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred ee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC-CCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 22 588754 445553 468999999987 44445544332 23345778999999887652 35999
Q ss_pred Eeecccc
Q 012994 358 LWKAKAS 364 (452)
Q Consensus 358 iw~~~~~ 364 (452)
++|+.+.
T Consensus 472 v~d~~~~ 478 (567)
T 1qks_A 472 VFDIKAM 478 (567)
T ss_dssp EEEGGGC
T ss_pred EEECCcc
Confidence 9999876
No 179
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.77 E-value=2.3e-14 Score=125.25 Aligned_cols=280 Identities=8% Similarity=-0.016 Sum_probs=189.7
Q ss_pred cccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE-eecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
+..+...+.+++++++| +++++...++.|.+||.. ++.... +..+...+.++++.+++.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKG-KVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 44566789999999998 777766668899999987 554322 22345779999999999888777768889999975
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcce-ecccCCCceEEEEECCCCCc
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN-SFQWGTDTVISVRFNPAEPN 217 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 217 (452)
+.... .........+..+.+.+++.++++.. +.+..||. +++... ........+.++++.+++ .
T Consensus 87 g~~~~-----------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~ 153 (299)
T 2z2n_A 87 GIIKE-----------YTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-A 153 (299)
T ss_dssp SCEEE-----------EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-C
T ss_pred CcEEE-----------EeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-C
Confidence 21100 00000234567888999999888764 57999998 444332 222234578999999987 6
Q ss_pred EEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 218 VLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
++++...++.|..||. ++... .+... ..+..+++.+++. ++++....+.+..||. +..........+...+.+
T Consensus 154 l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 154 LWFTENQNNAIGRITE-SGDIT-EFKIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA 229 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred EEEEeCCCCEEEEEcC-CCcEE-EeeCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence 7777767789999998 44432 22221 2345788888765 5666667889999998 433222222234567899
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
++++++|++.++...++.|..||. ++.............+.++++ +++.++++.+ .+.|..++..++
T Consensus 230 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 999999997776667889999998 454332222233357899999 8888777655 567777777654
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=2.6e-17 Score=150.31 Aligned_cols=256 Identities=11% Similarity=0.007 Sum_probs=168.6
Q ss_pred EEEeCCCCceEEEeecCCCC-----eeEEEEccCCCeEEEEeCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec
Q 012994 92 RLWDIANRRTVCQYSGHQGA-----VRGLTVSTDGRILVSCGTD---CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK 163 (452)
Q Consensus 92 ~iwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (452)
..+|..++..+..+..+... +.+++|+|||++|+.+... ..|.+||+.++...... ...
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~-------------~~~ 79 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT-------------EGK 79 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-------------CSS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-------------cCC
Confidence 34577788777777655443 7888999999998877543 36888898766432111 111
Q ss_pred CC-eeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEE-------------------EEECCCCCcEEEE
Q 012994 164 NS-FWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVIS-------------------VRFNPAEPNVLAT 221 (452)
Q Consensus 164 ~~-~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~~l~~ 221 (452)
.. .....|+|+|..++... +.+.+||+.+++.......+...... +.|+|++. .++.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~ 158 (396)
T 3c5m_A 80 GDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKF 158 (396)
T ss_dssp CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHH
T ss_pred CCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc-ceee
Confidence 12 22367899999887665 46999999988766555544332222 34567663 3332
Q ss_pred E-----ecCCeEEEEEccCCCCceEEEeecccceEEEcc-CCCceEEeecCC-----CeEEEEeCCCccccceeeeCc-c
Q 012994 222 T-----ASDRSITLYDLRMSSPARKVIMRTKSNSISWNP-MEPMNFTAANED-----CNCYSYDSRKLDEAKCVHMGH-E 289 (452)
Q Consensus 222 ~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~-~ 289 (452)
+ ..+..|.+||+.+++.............+.|+| ++..++++.... ..++++|...... ....... .
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~ 237 (396)
T 3c5m_A 159 AEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEG 237 (396)
T ss_dssp HHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTT
T ss_pred eeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCC
Confidence 2 456789999998877655555555677889999 666555544322 4688998865332 1121111 3
Q ss_pred cceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccCCcCcEEEEEEcC-CCCEEEEee------------
Q 012994 290 SAVMDIDYSPTGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSC-DASYVISGS------------ 351 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~------------ 351 (452)
..+..++|+|+|++|+.++.+ +.|++||+.+++........ ... +.|+| ||++|++++
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 238 ESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC---------
T ss_pred ccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 357889999999988777554 45999999988765443222 233 89999 999888754
Q ss_pred ----CCCcEEEeecccccc
Q 012994 352 ----DDTNLRLWKAKASEQ 366 (452)
Q Consensus 352 ----~dg~i~iw~~~~~~~ 366 (452)
.++.|++||+.+++.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -CCCCCCEEEEEETTTTBC
T ss_pred cccCCCCcEEEEecccCce
Confidence 347899999987764
No 181
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.76 E-value=6.5e-16 Score=135.01 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=168.6
Q ss_pred ccccccccccccEEEEEeCCCCcc-eEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 57 PFIGALDGHRDGISCMAKNPNYLK-GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 57 ~~~~~l~~h~~~V~~~~~~~~~~~-~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
..+..+..+.....+++|+|++ + +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g-~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPAR-SAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGG-TEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CcEEEEecCCccccCCeEeCCC-CEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 4445566677788999999998 6 7888889999999999877 5667777888999999999998877777789999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
||..+++... ..... . ......+.+++++|++
T Consensus 95 ~d~~~g~~~~-------------~~~~~----------------------------~-------~~~~~~~~~i~~d~~G 126 (296)
T 3e5z_A 95 QREPGGEWES-------------IADSF----------------------------E-------GKKLNSPNDVCLAPDG 126 (296)
T ss_dssp ECSTTCCEEE-------------EECEE----------------------------T-------TEECCCCCCEEECTTS
T ss_pred EcCCCCcEEE-------------Eeecc----------------------------C-------CCCCCCCCCEEECCCC
Confidence 9986653210 00000 0 0011234567777776
Q ss_pred CcEEEEE----e-------------cCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCC
Q 012994 216 PNVLATT----A-------------SDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 216 ~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 277 (452)
+++++. . ..+.|..+|.. +. ...+. .......++|+|++..+ ++...++.++.|+...
T Consensus 127 -~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 127 -SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNA 202 (296)
T ss_dssp -CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECS
T ss_pred -CEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECC
Confidence 566552 2 12345555544 22 22222 23345789999999987 8888899999999862
Q ss_pred cccc---ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE-cCCCCEEEEeeCC
Q 012994 278 LDEA---KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF-SCDASYVISGSDD 353 (452)
Q Consensus 278 ~~~~---~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~d 353 (452)
.... ...+..+...+.+++++++|+++++. ++.|.+||.. ++....+..+. . +++++| +|+++.|++++.+
T Consensus 203 ~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~-~-~~~~~f~~~d~~~L~v~t~~ 277 (296)
T 3e5z_A 203 RGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQ-T-TSNLCFGGPEGRTLYMTVST 277 (296)
T ss_dssp SSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSS-C-CCEEEEESTTSCEEEEEETT
T ss_pred CCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCC-C-ceeEEEECCCCCEEEEEcCC
Confidence 2222 11223345567789999999876666 7889999987 66665555443 4 889999 5899988888876
Q ss_pred CcEEEeeccccc
Q 012994 354 TNLRLWKAKASE 365 (452)
Q Consensus 354 g~i~iw~~~~~~ 365 (452)
+ +.-++..+.+
T Consensus 278 ~-l~~~~~~~~~ 288 (296)
T 3e5z_A 278 E-FWSIETNVRG 288 (296)
T ss_dssp E-EEEEECSCCB
T ss_pred e-EEEEEccccc
Confidence 4 4444555443
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.76 E-value=7.6e-17 Score=157.92 Aligned_cols=247 Identities=6% Similarity=-0.052 Sum_probs=160.2
Q ss_pred cccccEEEEEeCCCCcceEE-----EeeCCCcEEEEeCCCCceEEEeecCCCCe--eEEEEccCCCeEEEEeCCCc----
Q 012994 64 GHRDGISCMAKNPNYLKGFF-----SGSMDGDIRLWDIANRRTVCQYSGHQGAV--RGLTVSTDGRILVSCGTDCT---- 132 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~-----tg~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~~~~~~~l~s~~~dg~---- 132 (452)
+|...+.+++||||| ++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 566789999999999 7777 45556789999999988641 1122222 68999999999999988765
Q ss_pred ---------EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCC
Q 012994 133 ---------VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 133 ---------v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~ 203 (452)
|++|++.++... ...+.....+.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~------------------------------------------------~~lv~~~~~~~ 226 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSK------------------------------------------------DTVVHERTGDP 226 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGG------------------------------------------------CEEEECCCCCT
T ss_pred cccCCCCCEEEEEECCCCchh------------------------------------------------ceEEEecCCCC
Confidence 555555433100 00122222344
Q ss_pred CceEEEEECCCCCcEEEEEecCC----eEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeec---CCCeEEEEeC
Q 012994 204 DTVISVRFNPAEPNVLATTASDR----SITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAAN---EDCNCYSYDS 275 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~d~ 275 (452)
..+.++.|+|++. .|+.++.++ .|.+||..++. ...+.. ........+ +++. +++.+. .++.|+.||+
T Consensus 227 ~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 227 TTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp TCEEEEEECTTSC-CEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred EEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 5788999999995 555544444 56666554443 333333 233344444 6666 666555 3588999998
Q ss_pred CCccc--cceeeeCc-ccceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeeeccCCcCcEEEEEEcCCCCEEE---
Q 012994 276 RKLDE--AKCVHMGH-ESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVI--- 348 (452)
Q Consensus 276 ~~~~~--~~~~~~~~-~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~--- 348 (452)
.+... ...+...+ ...+..++|+ ++.++++...|+..++|.+. ++.....+.......+..++++|++..|+
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 381 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVF 381 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEE
T ss_pred CCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEE
Confidence 76542 23333333 4568888888 77888899999988887654 34444444333346788889999998776
Q ss_pred -EeeCCCcEEEeecccccc
Q 012994 349 -SGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 349 -s~~~dg~i~iw~~~~~~~ 366 (452)
+....+.|++||+.+++.
T Consensus 382 ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 382 TSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTEEEEEEEEETTTCCE
T ss_pred cCCCCCCEEEEEECCCCcE
Confidence 333457899999987663
No 183
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.75 E-value=1.3e-14 Score=130.15 Aligned_cols=280 Identities=8% Similarity=0.013 Sum_probs=188.1
Q ss_pred EeCCCCcceEEEeeC--CC---cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe----------CCCcEEEEe
Q 012994 73 AKNPNYLKGFFSGSM--DG---DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWN 137 (452)
Q Consensus 73 ~~~~~~~~~l~tg~~--dg---~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd 137 (452)
...|++ .++++... .+ .|.+||..+++.+..+.....+ .++++||+++|+.+. .++.|.+||
T Consensus 27 ~~~~~~-~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 27 APGADG-RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred cCCCCC-CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 344666 66665543 33 8899999999988887754444 999999999999886 367899999
Q ss_pred CCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCccee-cccCCCceEEEEEC
Q 012994 138 VPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINS-FQWGTDTVISVRFN 212 (452)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~-~~~~~~~i~~~~~~ 212 (452)
..+.+.......... .. .........+.++|+|+.++..+ +.|.++| .+++.+.. +... . ++.+.
T Consensus 104 ~~t~~~~~~i~~~~~-~~----~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~ 173 (373)
T 2mad_H 104 PVTFLPIADIELPDA-PR----FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIH 173 (373)
T ss_pred CCCCcEEEEEECCCc-cc----cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEE
Confidence 987654332211100 00 00012234789999999888753 4599999 99988777 6542 2 24556
Q ss_pred CCCCcEEEEEecCCeEEEEEccCCCCceEEE-----eeccc--ceEEEccCCCceEEeecCCCeEEEEeCCCccccc-ee
Q 012994 213 PAEPNVLATTASDRSITLYDLRMSSPARKVI-----MRTKS--NSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-CV 284 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~ 284 (452)
|.++..+++.+.||.+.++|. +++...... ..... ....+.+++..++++. ..+.+++.|........ ..
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~ 251 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAP 251 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeee
Confidence 777677788889999999999 766553221 11110 1234455555544444 56788888886432111 11
Q ss_pred eeC----------cccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 285 HMG----------HESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 285 ~~~----------~~~~v~~~~~s~~g~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
+.- .......+.++|+++.++++.. ++.|.++|+.+++.+..+..+ ....+++|+|||
T Consensus 252 ~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg 329 (373)
T 2mad_H 252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDG 329 (373)
T ss_pred eeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCC
Confidence 100 1122344789999988777653 357999999999988777554 358999999999
Q ss_pred C-EEEEee-CCCcEEEeeccccccccc
Q 012994 345 S-YVISGS-DDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 345 ~-~l~s~~-~dg~i~iw~~~~~~~~~~ 369 (452)
+ +++++. .++.|.+||+.+++.+..
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 9 777776 589999999999998876
No 184
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.73 E-value=4.3e-15 Score=131.18 Aligned_cols=284 Identities=12% Similarity=0.122 Sum_probs=190.3
Q ss_pred EEeCCCCcceEEEeeC-----CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe----------CCCcEEEE
Q 012994 72 MAKNPNYLKGFFSGSM-----DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLW 136 (452)
Q Consensus 72 ~~~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iw 136 (452)
....|++ +.+++... ++.|.+.|..+++.+..+.....+ .++++|||++|++++ .++.|.+|
T Consensus 38 ~~~~pd~-~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPDA-RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCCT-TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCCC-CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 3456887 66666544 689999999999999988765555 499999999988775 36789999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEEC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFN 212 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 212 (452)
|..+.+........... ..........+.++|+|+.++..+ +.|.++|+.+++.+..+.... +..+.
T Consensus 115 D~~t~~v~~~I~v~~g~-----r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~ 185 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAP-----RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIF 185 (386)
T ss_dssp CTTTCCEEEEEEETTCC-----CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEE
T ss_pred ECCCCeEEEEEECCCcc-----ccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceee
Confidence 99887433221110000 000012456789999999777653 469999999999988886422 12234
Q ss_pred CCCCcEEEEEecCCeEEEEEccC-CCCceEEEeecc-----c-ceEEEc-cCCCceEEeecCCCeEEEEeCCCccc--cc
Q 012994 213 PAEPNVLATTASDRSITLYDLRM-SSPARKVIMRTK-----S-NSISWN-PMEPMNFTAANEDCNCYSYDSRKLDE--AK 282 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~--~~ 282 (452)
|.+.+.+++.+.||.+.+.++.. ++.......... . ....|. +++..++ .+.++.++++|...... ..
T Consensus 186 P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~--vs~~g~V~v~d~~~~~~~v~~ 263 (386)
T 3sjl_D 186 PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW--PTYTGKIHQIDLSSGDAKFLP 263 (386)
T ss_dssp EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE--EBTTSEEEEEECTTSSCEECC
T ss_pred cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE--EeCCCEEEEEECCCCcceeec
Confidence 55556777888899999999976 444221110000 0 123443 3443333 44478999999865431 11
Q ss_pred eee--e------C-cccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 283 CVH--M------G-HESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 283 ~~~--~------~-~~~~v~~~~~s~~g~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
... . + .......++++++++.++.... .+.|.++|+.+++.+..+..+ ..+..|++++|
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D 341 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQD 341 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSS
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCC
Confidence 110 0 0 1123345788999988877643 257999999999998887666 46889999999
Q ss_pred CC-EEEEe-eCCCcEEEeecccccccccCC
Q 012994 344 AS-YVISG-SDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 344 ~~-~l~s~-~~dg~i~iw~~~~~~~~~~~~ 371 (452)
++ +|++. ..++.|.++|..+++.+.++.
T Consensus 342 ~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 342 EKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 97 66664 458999999999999987775
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.73 E-value=4.2e-15 Score=127.98 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=165.9
Q ss_pred cEEEEEeCCCCcceEE-EeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFF-SGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~-tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
...++++++++ ++++ +.+.++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-- 100 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-- 100 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE--
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe--
Confidence 78899999998 7776 557789999999765543322223445788999999988666555 889999997543110
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc-cCCCceEEEEECCCCCcEEEEEecC
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLATTASD 225 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~d 225 (452)
.+. .....+.++++.+++ +++++...+
T Consensus 101 ---------------------------------------------------~~~~~~~~~p~~i~~~~~g-~l~v~~~~~ 128 (270)
T 1rwi_B 101 ---------------------------------------------------VLPFDGLNYPEGLAVDTQG-AVYVADRGN 128 (270)
T ss_dssp ---------------------------------------------------ECCCCSCSSEEEEEECTTC-CEEEEEGGG
T ss_pred ---------------------------------------------------eeecCCcCCCcceEECCCC-CEEEEECCC
Confidence 000 112457889999987 677777778
Q ss_pred CeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEE
Q 012994 226 RSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREF 304 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 304 (452)
+.|.+|+..+......... ...+..+++.+++. ++++...++.|..||......... ...+...+.+++++++|.++
T Consensus 129 ~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNNQVVL-PFTDITAPWGIAVDEAGTVY 206 (270)
T ss_dssp TEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCCEEEC-CCSSCCSEEEEEECTTCCEE
T ss_pred CEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCceEee-cccCCCCceEEEECCCCCEE
Confidence 8999997654433221111 13467889999876 677777788999999876433221 12233568899999999877
Q ss_pred EEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 305 VTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
++...++.|.+||........ ....+...+.+++++++|+++++...++.|++++....+.
T Consensus 207 v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 777778899999987654332 2222235689999999999888888999999999887654
No 186
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.72 E-value=7.1e-15 Score=130.09 Aligned_cols=255 Identities=11% Similarity=0.074 Sum_probs=176.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
.....+++..+ .++++...++.|.+||..+++.+..+. .......++++++++.+++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~~~--~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIRDG--IGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEETT--EEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEECC--EEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 44677777543 666677778999999999999988886 456789999999885444444789999999987754322
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe---CCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
......... ......+++ .++.++++. ++.|.++|..+++.+..+... .....+.++|++ ++++++.
T Consensus 121 i~~g~~~~~-------~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG-~l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDME-------SGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYN-KMWTITD 190 (328)
T ss_dssp EECTTCCTT-------TCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTS-EEEEEBC
T ss_pred EEcCCcccc-------CCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCC-CEEEEEC
Confidence 111100000 002334555 455556654 357999999999887777653 345788999988 5666665
Q ss_pred cC----------CeEEEEEccCCCCceEEEee--cccceEEEccCCCceEEeecCCCeEEEEeCCCccccce-eeeCccc
Q 012994 224 SD----------RSITLYDLRMSSPARKVIMR--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC-VHMGHES 290 (452)
Q Consensus 224 ~d----------g~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~~~~~~~ 290 (452)
.+ +.|.++|..+.+....+... .....++++|++..++++.. .++.||..+...... .......
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCCSS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCCCC
Confidence 54 78999999888777666553 35789999999988777654 899999876553221 1112245
Q ss_pred ceEEEEEcC-CCCEEEEE----eCCCeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 291 AVMDIDYSP-TGREFVTG----SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 291 ~v~~~~~s~-~g~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
....++++| ++.++++. ..++.|.+||.. ++.+..+..+ .....++|
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G--~~P~~~~~ 319 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG--IIPGAFCW 319 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE--ESEEEEEE
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec--cCcceEEE
Confidence 688999999 55555665 568999999998 8877776544 34556665
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=7.7e-15 Score=125.97 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=162.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCC-CCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
++|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+...
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~-------- 74 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP-------- 74 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--------
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--------
Confidence 889999999999999999999999998776 4789999999999888 34678999998 66443322211
Q ss_pred EEEecCCeeeeeecCCCCeEEEeCC---eEEEEeCCCCCcceecccC------CCceEEEEECCCCCcEEEEEecCCeEE
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAGA---QVDIWNHNRSQPINSFQWG------TDTVISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~---~i~i~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
....+.++.+.++|.++++..+ .+..+|. +++.+..+... ......+.+.+++ +++++...++.|.
T Consensus 75 ---~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-~~lv~~~~~~~v~ 149 (276)
T 3no2_A 75 ---AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-NYLVPLFATSEVR 149 (276)
T ss_dssp ---TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-CEEEEETTTTEEE
T ss_pred ---CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-CEEEEecCCCEEE
Confidence 0124567788999999988754 4555564 56655554321 1234455677777 6888888888999
Q ss_pred EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
.||.. ++.+..+.. ...+.++...++|+++++++.
T Consensus 150 ~~d~~-G~~~w~~~~--------------------------------------------~~~~~~~~~~~~g~~~v~~~~ 184 (276)
T 3no2_A 150 EIAPN-GQLLNSVKL--------------------------------------------SGTPFSSAFLDNGDCLVACGD 184 (276)
T ss_dssp EECTT-SCEEEEEEC--------------------------------------------SSCCCEEEECTTSCEEEECBT
T ss_pred EECCC-CCEEEEEEC--------------------------------------------CCCccceeEcCCCCEEEEeCC
Confidence 99876 655544321 122345677899999999998
Q ss_pred CCeEEEEECCCCceeeeeccC-----CcCcEEEEEEcCCCCEEEEeeCC--------CcEEEeec-ccccccccC
Q 012994 310 DRTIRIFQYNGGRSREIYHTK-----RMQRVFCVKFSCDASYVISGSDD--------TNLRLWKA-KASEQLGVL 370 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iw~~-~~~~~~~~~ 370 (452)
++.|..+|..+|+.+..+... ....+..++..++|.++++.... +..+++++ .+|+.+-.+
T Consensus 185 ~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 185 AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 889999999999988777432 12348899999999988876311 13345555 455555444
No 188
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=2.4e-16 Score=153.95 Aligned_cols=257 Identities=10% Similarity=0.015 Sum_probs=164.5
Q ss_pred EeecCCCCeeEEEEccCCCeEEEE--eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee--cCCCCe-E
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVSC--GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH--QWEGDL-F 178 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~ 178 (452)
.+.+|...+..++|+++.-++++. +.++...||....+.....+.... .......+...-....+ +|||.. +
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAP---WNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTT---CCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCC---ccccccccccCCccceeeeecCCCeEE
Confidence 355788999999999886666666 558899999964332111111110 00000000000013334 489988 7
Q ss_pred EEeC---CeEEEEeCC--CCCcceeccc-----CCCceEEEEECCCCCcEEEEEecC----------CeEEEEEccC---
Q 012994 179 ATAG---AQVDIWNHN--RSQPINSFQW-----GTDTVISVRFNPAEPNVLATTASD----------RSITLYDLRM--- 235 (452)
Q Consensus 179 ~~~~---~~i~i~d~~--~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~--- 235 (452)
+... ..|.++++. .......+.. +...+.+++|+|++ +.|++++.+ ..|.+||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 6664 346666665 2033444444 56678899999999 566666665 5899999987
Q ss_pred ---CCCceEE-EeecccceEEEccCCCceEEeecCC-------CeEEEEeCCC-c--cccceeeeCcccceEEEEEcCCC
Q 012994 236 ---SSPARKV-IMRTKSNSISWNPMEPMNFTAANED-------CNCYSYDSRK-L--DEAKCVHMGHESAVMDIDYSPTG 301 (452)
Q Consensus 236 ---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~-~--~~~~~~~~~~~~~v~~~~~s~~g 301 (452)
+...... ........+.|+|++..++.+.... ..|++||+.. . .....+..++...+..++|+|||
T Consensus 174 ~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 174 ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG 253 (662)
T ss_dssp TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence 4332222 1233456789999999877666443 5899999883 3 14444444567789999999999
Q ss_pred CEEEEEeCCC--eEEEEECCCCceeeeeccCCcC-------cEEEEEEcCCCCEEEEeeCCCcEEEe--eccccc
Q 012994 302 REFVTGSYDR--TIRIFQYNGGRSREIYHTKRMQ-------RVFCVKFSCDASYVISGSDDTNLRLW--KAKASE 365 (452)
Q Consensus 302 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~~l~s~~~dg~i~iw--~~~~~~ 365 (452)
+++++++.++ .|.+||+.+++........... .+..++|+|+++++++++. +.++|| ++.+++
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence 9888888888 6777777677654443322111 1567899999999999998 999999 444444
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=3.5e-14 Score=126.27 Aligned_cols=240 Identities=10% Similarity=0.047 Sum_probs=163.7
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC----C
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD----C 131 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d----g 131 (452)
......+.++...+.+++|+|++ ++++++..++.|.+||..+++.......+...+.+++|+++++++++...+ +
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred cceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 34455667777888999999998 777888889999999998887655444567789999999999887777666 6
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--------CeEEEEeCCCCCcceecccCC
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINSFQWGT 203 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~ 203 (452)
.|.+||..++......... .....+..+.++++|.++++.. +.|..++..+++... +....
T Consensus 113 ~i~~~d~~~~~~~~~~~~~----------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 181 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDL----------STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNI 181 (333)
T ss_dssp EEEEECTTSCSCEEEECSS----------SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEE
T ss_pred eEEEEeCCCCEEEEEEccC----------ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCC
Confidence 8999998766432111000 0124577889999999888765 246666655544332 22223
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccC-CCCceEE------Eee--cccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRM-SSPARKV------IMR--TKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
..+..++|+|++..++++.+.++.|.+||+.. +.....+ ... ..+..+++.+++. ++++...++.|.+||
T Consensus 182 ~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d 260 (333)
T 2dg1_A 182 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFN 260 (333)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEEC
T ss_pred CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEEC
Confidence 45788999999844556666788999999964 3332221 111 2456788888875 456666678999999
Q ss_pred CCCccccceeeeCcc------cceEEEEEcCCCCEEEEEeCC
Q 012994 275 SRKLDEAKCVHMGHE------SAVMDIDYSPTGREFVTGSYD 310 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~l~s~~~d 310 (452)
... .. ...+..+. ..+.+++|+|+++.|+.++.+
T Consensus 261 ~~g-~~-~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 261 KRG-YP-IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TTS-CE-EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCC-CE-EEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 843 22 22222222 268899999998777666655
No 190
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.71 E-value=3e-14 Score=125.52 Aligned_cols=248 Identities=13% Similarity=0.144 Sum_probs=163.9
Q ss_pred cccccccEEEEEeCCCCcceEEE-------eeCCCcEEEEeCCCCceEEEee----cCCCCeeEEEEccC-CCeEEEEeC
Q 012994 62 LDGHRDGISCMAKNPNYLKGFFS-------GSMDGDIRLWDIANRRTVCQYS----GHQGAVRGLTVSTD-GRILVSCGT 129 (452)
Q Consensus 62 l~~h~~~V~~~~~~~~~~~~l~t-------g~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~-~~~l~s~~~ 129 (452)
+...-....+++|++++ .++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +.
T Consensus 13 ~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~ 90 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DM 90 (314)
T ss_dssp EECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ET
T ss_pred hhccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-EC
Confidence 33444567899999998 77777 6778999999988777543221 24567899999998 664544 44
Q ss_pred CCcEEEEeCCCCCCCCC-CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEE
Q 012994 130 DCTVKLWNVPVATLTDS-DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
.+.|.+||.. ++.... ... .. ......+.+
T Consensus 91 ~~~l~~~d~~-g~~~~~~~~~-----------------------------------------~~-------~~~~~~~~~ 121 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFEEIAKKD-----------------------------------------SE-------GRRMQGCND 121 (314)
T ss_dssp TTEEEEEETT-SCEEECCSBC-----------------------------------------TT-------SCBCBCCCE
T ss_pred CCCEEEEeCC-CCEEEEEecc-----------------------------------------CC-------CccccCCcC
Confidence 4478889876 432100 000 00 001234667
Q ss_pred EEECCCCCcEEEEEecC---------------CeEEEEEccCCCCceEEEeecccceEEEc----cCCCceEEeecCCCe
Q 012994 209 VRFNPAEPNVLATTASD---------------RSITLYDLRMSSPARKVIMRTKSNSISWN----PMEPMNFTAANEDCN 269 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 269 (452)
+++.+++ +++++...+ +.|..||.. ++.............++++ |++..++++...++.
T Consensus 122 i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~ 199 (314)
T 1pjx_A 122 CAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK 199 (314)
T ss_dssp EEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE
T ss_pred EEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCe
Confidence 7787776 565555444 466666654 3332222333455778899 888877788788899
Q ss_pred EEEEeCCCccc-----cceeeeCcc-cceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCC
Q 012994 270 CYSYDSRKLDE-----AKCVHMGHE-SAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 270 i~~~d~~~~~~-----~~~~~~~~~-~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
++.||...... .......+. ..+..++++++|+++++...++.|.+||..+++....+..+ ...+.+++|+|+
T Consensus 200 i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~d 278 (314)
T 1pjx_A 200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQ 278 (314)
T ss_dssp EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTT
T ss_pred EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCC
Confidence 99999752111 111122333 56788999999998888878899999999877665554433 267999999999
Q ss_pred CCEE-EEeeCCCcEEEeeccc
Q 012994 344 ASYV-ISGSDDTNLRLWKAKA 363 (452)
Q Consensus 344 ~~~l-~s~~~dg~i~iw~~~~ 363 (452)
++.| ++...++.|..|++..
T Consensus 279 g~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSEEEEEETTTTEEEEEECSS
T ss_pred CCEEEEEeCCCCeEEEEeCCC
Confidence 9955 4555678899999864
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.68 E-value=7.6e-15 Score=144.81 Aligned_cols=260 Identities=8% Similarity=0.014 Sum_probs=159.6
Q ss_pred cccccEEEEEeCCCCcceEEEeeCC-C----cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMD-G----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~d-g----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
+|...+..++||||| ++||.++.+ | .|++||+.+++.+... .+...+..++|+|| +.|+.++.|+...
T Consensus 160 ~~~~~~~~~~~SPDG-~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~---- 232 (741)
T 1yr2_A 160 DGATALDAWAASDDG-RLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKE---- 232 (741)
T ss_dssp ---EEEEEEEECTTS-SEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC------
T ss_pred CCCEEEEeEEECCCC-CEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccc----
Confidence 344578899999999 777765543 3 5999999999875532 12223467899999 9998888765310
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCc----ceecccCCCceEEEEECCC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQP----INSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~ 214 (452)
.+... .. .....|.+|++.++.. +.....+...+..+.|+|+
T Consensus 233 -~~~~~----------------------------~~-----~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpD 278 (741)
T 1yr2_A 233 -GQAFQ----------------------------AL-----NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSD 278 (741)
T ss_dssp -----------------------------------C-----CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTT
T ss_pred -ccccc----------------------------cC-----CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCC
Confidence 00000 00 0012344445444331 1111222335788999999
Q ss_pred CCcEEEEEecC-----CeEEEEEccCC--CCceEEEeecccceEEEccCCCceEEeecC---CCeEEEEeCCCc-cccce
Q 012994 215 EPNVLATTASD-----RSITLYDLRMS--SPARKVIMRTKSNSISWNPMEPMNFTAANE---DCNCYSYDSRKL-DEAKC 283 (452)
Q Consensus 215 ~~~~l~~~~~d-----g~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~-~~~~~ 283 (452)
+. .|+..+.+ ..|.+||+.++ .....+..........+.|++..+++.... ++.|+.||.... .....
T Consensus 279 G~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 357 (741)
T 1yr2_A 279 GR-WVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT 357 (741)
T ss_dssp SC-EEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE
T ss_pred CC-EEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE
Confidence 94 55555443 38999999876 314444433322233345888877766553 457999998764 23344
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCceeeeeccCCcCcEEEEEEcCCCCEEE----EeeCCCcEEE
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN-GGRSREIYHTKRMQRVFCVKFSCDASYVI----SGSDDTNLRL 358 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~~~dg~i~i 358 (452)
+...+...+..++++ ++.++++...|+..+||.+. ++.....+.......+..+.++|+++.|+ +....+.|++
T Consensus 358 l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 436 (741)
T 1yr2_A 358 VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA 436 (741)
T ss_dssp EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence 444555567778887 66778888889987777554 34444444333346789999999988665 2334588999
Q ss_pred eecccccc
Q 012994 359 WKAKASEQ 366 (452)
Q Consensus 359 w~~~~~~~ 366 (452)
||+.+++.
T Consensus 437 ~d~~tg~~ 444 (741)
T 1yr2_A 437 LDPATAKT 444 (741)
T ss_dssp EETTTTEE
T ss_pred EECCCCcE
Confidence 99987763
No 192
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.67 E-value=1.5e-14 Score=130.16 Aligned_cols=268 Identities=11% Similarity=0.053 Sum_probs=183.5
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe----------CCCcEEEEeCCCCCCCCCCCCCCCCCCCee
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTDSDDSTDNSSEPLA 158 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 158 (452)
+.|.++|..+++.+..+..-..+ .++++||+++|+++. .++.|.++|..+.+............
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r---- 172 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR---- 172 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc----
Confidence 79999999999999988755555 899999999888876 36789999998875432211100000
Q ss_pred EEEecCCeeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEcc
Q 012994 159 VYVWKNSFWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLR 234 (452)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 234 (452)
.........+.++++|+.++..+ +.|.++|..+++.+..+..... ....|.+...+++.+.||.+.+.+..
T Consensus 173 -~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 173 -FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp -CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECC
T ss_pred -cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECC
Confidence 00012345789999999887753 4699999999998887765321 34455555677778889999888885
Q ss_pred CCCCceEE----Eeecc--cceEEEccCCCceEEeecCCCeEEEEeCCCccccc-eeee---------C-cccceEEEEE
Q 012994 235 MSSPARKV----IMRTK--SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK-CVHM---------G-HESAVMDIDY 297 (452)
Q Consensus 235 ~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~~~---------~-~~~~v~~~~~ 297 (452)
+++..... ..... ...+.+.+++..++++. ..+.+++.|........ .... + .......+++
T Consensus 248 ~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 248 DGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp TTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred CCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence 55443211 11111 12345677777766654 46789999985432110 0000 0 0111223689
Q ss_pred cCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEEee-CCCcEEEeeccccc
Q 012994 298 SPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVISGS-DDTNLRLWKAKASE 365 (452)
Q Consensus 298 s~~g~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~ 365 (452)
+|+++.+++... ++.|.++|+.+.+.+..+..+ .....++|+|||+ ++++.. .++.|.++|+.+++
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999887776642 357999999999988887655 3588999999999 888877 58999999999999
Q ss_pred ccccC
Q 012994 366 QLGVL 370 (452)
Q Consensus 366 ~~~~~ 370 (452)
.+..+
T Consensus 405 vv~tI 409 (426)
T 3c75_H 405 ELRSV 409 (426)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88765
No 193
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.67 E-value=6.1e-13 Score=116.23 Aligned_cols=275 Identities=10% Similarity=-0.004 Sum_probs=185.9
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEE-EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVC-QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
.....+.+++++++| +++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||.. +.
T Consensus 17 ~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSEDG-KVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECTTS-CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECCCC-CEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 345688999999998 777777678999999987 55433 223334679999999999877776667889999976 43
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcce-ecccCCCceEEEEECCCCCcEE
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPIN-SFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l 219 (452)
.... .. ......+..+++.+++.++++.. +.+..+|.. ++... .+......+.++++.+++ +++
T Consensus 94 ~~~~-~~----------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~ 160 (300)
T 2qc5_A 94 FTEY-PL----------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALW 160 (300)
T ss_dssp EEEE-EC----------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEE
T ss_pred eEEe-cC----------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEE
Confidence 2100 00 00124567888899999888774 578899887 54432 223234678999999988 576
Q ss_pred EEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
++...++.|..||. ++... .+... ..+..+++.+++ .++++....+.+..+|.. ..........+...+.+++
T Consensus 161 v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 236 (300)
T 2qc5_A 161 FTENQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT-GEISEYDIPTPNARPHAIT 236 (300)
T ss_dssp EEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEE
T ss_pred EEecCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC-CcEEEEECCCCCCCceEEE
Confidence 66666788999998 44332 23322 235678888866 456666677789999983 2222222223456688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
++++|++.++...++.|..||. ++.............+.+++++++|+++++.. . .|..++.
T Consensus 237 ~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 237 AGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp ECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred ECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9999997777666789999998 44433222222235688999999998766554 4 6666664
No 194
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=3.5e-14 Score=127.01 Aligned_cols=219 Identities=9% Similarity=0.068 Sum_probs=146.8
Q ss_pred CCeeEEEEccCCCeEEEEe---------CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEE
Q 012994 110 GAVRGLTVSTDGRILVSCG---------TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFAT 180 (452)
Q Consensus 110 ~~v~~l~~~~~~~~l~s~~---------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (452)
..+..+.+ ||++++... .++.|.+||+.++.. ... ..+..+.|+|+|..++.
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-------------~~l----~~~~~~~~SpDg~~la~ 75 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-------------RFI----ENATMPRISPDGKKIAF 75 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-------------EEE----ESCEEEEECTTSSEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-------------EEc----ccCCCeEECCCCCEEEE
Confidence 34666777 788776642 256799999876531 111 45678899999998877
Q ss_pred eC-----C--eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec---------------------------CC
Q 012994 181 AG-----A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS---------------------------DR 226 (452)
Q Consensus 181 ~~-----~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---------------------------dg 226 (452)
.. + .|.+|++.+++.......+ . +..+.|+|++. .|+.++. ..
T Consensus 76 ~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (347)
T 2gop_A 76 MRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKT 152 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS-EEEEEEECCCC---------CCCC---------CEE
T ss_pred EEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccceeecCcccccCccc
Confidence 54 2 3888898887765554443 3 89999999984 5555442 25
Q ss_pred eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC---------CeEEEEeCCCccccceeeeCcccceEEEEE
Q 012994 227 SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED---------CNCYSYDSRKLDEAKCVHMGHESAVMDIDY 297 (452)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~ 297 (452)
.|.+||+.++.....+... ....+.|+|++ +++++..+ ..++.+| . .....+. .+ ..+..+
T Consensus 153 ~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~-~~-~~~~~~-- 222 (347)
T 2gop_A 153 TFWIFDTESEEVIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--D-GKEEKMF-EK-VSFYAV-- 222 (347)
T ss_dssp EEEEEETTTTEEEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--T-TEEEEEE-EE-ESEEEE--
T ss_pred eEEEEECCCCeEEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeC--C-CceEEec-cC-cceeeE--
Confidence 7999999887663444444 77889999999 44444332 2566666 2 2222222 23 445444
Q ss_pred cCCCCEEEEEeCC--------CeEEEEECCCCceeeeeccCCcCcEEE-EEEcCCCCEEEEeeCCCcEEEeecccccc
Q 012994 298 SPTGREFVTGSYD--------RTIRIFQYNGGRSREIYHTKRMQRVFC-VKFSCDASYVISGSDDTNLRLWKAKASEQ 366 (452)
Q Consensus 298 s~~g~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 366 (452)
+|+|++|+.++.+ ..|.+|| +++..... ..+...+.. +.|+ |+ ++++++.++.++|| +.+++.
T Consensus 223 spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~ 294 (347)
T 2gop_A 223 DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEI 294 (347)
T ss_dssp EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSE
T ss_pred CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc-ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCce
Confidence 9999998877754 3688888 55543333 334467886 9999 88 88999999999999 875543
No 195
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.63 E-value=4.7e-13 Score=121.74 Aligned_cols=238 Identities=10% Similarity=0.099 Sum_probs=165.3
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLWNVPVATLT 144 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~ 144 (452)
.....|+|++++ +++++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence 468899999998 7777777789999999988776555443 23334 99999999999888766 677777643310
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceeccc-CCCceEEEEECCCCCcEEEEEe
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTA 223 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~ 223 (452)
... +..+.. ....+.+++++|+++.+++ +.
T Consensus 207 ------------~~~------------------------------------~g~~~~~~~~~p~~iav~p~~g~lyv-~d 237 (409)
T 3hrp_A 207 ------------PTR------------------------------------IGQLGSTFSGKIGAVALDETEEWLYF-VD 237 (409)
T ss_dssp ------------EEE------------------------------------EEECCTTSCSCCCBCEECTTSSEEEE-EC
T ss_pred ------------eEE------------------------------------eeeccchhcCCcEEEEEeCCCCeEEE-EE
Confidence 000 000001 2345677899996545554 66
Q ss_pred cCCeEEEEEccCCCCceEEE---e--ecc--cc-eEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-------
Q 012994 224 SDRSITLYDLRMSSPARKVI---M--RTK--SN-SISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH------- 288 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~---~--~~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------- 288 (452)
.++.|..||..+... ..+. . ... .. .++++|++..++++....+.|+.|+.... .....++
T Consensus 238 ~~~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~ 313 (409)
T 3hrp_A 238 SNKNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQ 313 (409)
T ss_dssp TTCEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCB
T ss_pred CCCcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcC
Confidence 788999999876652 2221 1 111 12 89999988888888888999999987643 1111122
Q ss_pred --------ccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeecc-------------CCcCcEEEEEEcCCCCE
Q 012994 289 --------ESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHT-------------KRMQRVFCVKFSCDASY 346 (452)
Q Consensus 289 --------~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~s~~~~~ 346 (452)
-.....++++|+|+++++-+ .++.|+.|++.++........ ........++++++|.+
T Consensus 314 dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 314 DGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp CEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred CCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 23478999999999877777 789999999877765433221 01245899999999988
Q ss_pred EEEeeCCCcEEEeec
Q 012994 347 VISGSDDTNLRLWKA 361 (452)
Q Consensus 347 l~s~~~dg~i~iw~~ 361 (452)
+++-..++.|+.+++
T Consensus 394 yVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 394 WIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEESTTCEEEEEEE
T ss_pred EEEECCCCeEEEEEe
Confidence 888888888888765
No 196
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=5.8e-13 Score=115.57 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=137.4
Q ss_pred cccccEEEEEe-CCCCcceEEEeeC-CCcEEEEeCCCCceEEEee-cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCC
Q 012994 64 GHRDGISCMAK-NPNYLKGFFSGSM-DGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPV 140 (452)
Q Consensus 64 ~h~~~V~~~~~-~~~~~~~l~tg~~-dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~ 140 (452)
+|...+.++++ .+++ .++++... ++.|.+|| .+++.+..+. .+...+.+++++++++++++...++.|.+||...
T Consensus 74 ~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG 151 (286)
T ss_dssp TCBSSEEEEEEETTTT-EEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred ccccCceEEEEEcCCC-eEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC
Confidence 45678999999 5676 66666543 88999999 5677766664 3446789999999998888777788999998631
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceec--ccCCCceEEEEECCCCCcE
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSF--QWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~ 218 (452)
. . +..+ ..+...+.++++++++ ++
T Consensus 152 ~-~----------------------------------------------------~~~~~~~~~~~~p~~i~~~~~g-~l 177 (286)
T 1q7f_A 152 N-V----------------------------------------------------LHKFGCSKHLEFPNGVVVNDKQ-EI 177 (286)
T ss_dssp C-E----------------------------------------------------EEEEECTTTCSSEEEEEECSSS-EE
T ss_pred C-E----------------------------------------------------EEEeCCCCccCCcEEEEECCCC-CE
Confidence 1 0 0011 0123457899999987 67
Q ss_pred EEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEEeecCCC-eEEEEeCCCccccceeeeCc--ccce
Q 012994 219 LATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFTAANEDC-NCYSYDSRKLDEAKCVHMGH--ESAV 292 (452)
Q Consensus 219 l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~~~--~~~v 292 (452)
+++...++.|.+||.. +..+..+... ..+..+++++++. ++++...++ .|.+||.... .. ..+..+ ...+
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~-~~-~~~~~~~~~~~~ 253 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQ-LI-SALESKVKHAQC 253 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSC-EE-EEEEESSCCSCE
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCC-EE-EEEcccCCCCcc
Confidence 7777789999999974 3333333322 3457889999874 566666665 9999996532 22 222222 2347
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
.+++++|+|+++++ +.|+.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 79999999987777 57999999998654
No 197
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.60 E-value=3.1e-12 Score=111.47 Aligned_cols=231 Identities=12% Similarity=0.063 Sum_probs=159.3
Q ss_pred ecCCCCeeEEEEccCC-CeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCe
Q 012994 106 SGHQGAVRGLTVSTDG-RILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQ 184 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (452)
..+..-.-+..|++++ .++++...++.|..||..++.. ........+.+++++++|.++++..+.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~~~~i~~~~dG~l~v~~~~~ 74 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--------------QRVTMDAPVSSVALRQSGGYVATIGTK 74 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--------------EEEECSSCEEEEEEBTTSSEEEEETTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--------------EEEeCCCceEEEEECCCCCEEEEECCe
Confidence 3344456788999954 4556666788999999876531 233345678899999999988888788
Q ss_pred EEEEeCCCCCcceeccc----CCCceEEEEECCCCCcEEEEEecC---------CeEEEEEccCCCCceE-EEeecccce
Q 012994 185 VDIWNHNRSQPINSFQW----GTDTVISVRFNPAEPNVLATTASD---------RSITLYDLRMSSPARK-VIMRTKSNS 250 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~-~~~~~~~~~ 250 (452)
|.+||..+++....... ....+.++++.|++ +++++...+ ..-.+|.+........ .......+.
T Consensus 75 l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~png 153 (297)
T 3g4e_A 75 FCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNG 153 (297)
T ss_dssp EEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEE
T ss_pred EEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccc
Confidence 99999987764332221 12457899999988 566544321 2345555543322222 233345678
Q ss_pred EEEccCCCceEEeecCCCeEEEEeCC--Cccc----cceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee
Q 012994 251 ISWNPMEPMNFTAANEDCNCYSYDSR--KLDE----AKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR 324 (452)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~----~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~ 324 (452)
++|+|++..++++.+..+.|+.|+.. +... .......+...+..++++++|++.++...++.|..||..+++..
T Consensus 154 i~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred eEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 99999999988998889999999863 2211 11111223456789999999988888777889999999988887
Q ss_pred eeeccCCcCcEEEEEEc-CCCCEEEEeeC
Q 012994 325 EIYHTKRMQRVFCVKFS-CDASYVISGSD 352 (452)
Q Consensus 325 ~~~~~~~~~~v~~~~~s-~~~~~l~s~~~ 352 (452)
..+..+. ..+++++|. |+++.|+.++.
T Consensus 234 ~~i~~p~-~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPV-DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSS-SBEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCC-CCceEEEEeCCCCCEEEEEcC
Confidence 7765543 579999998 88887665543
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.60 E-value=9.6e-13 Score=116.27 Aligned_cols=272 Identities=13% Similarity=0.047 Sum_probs=171.2
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecCC-------CCe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGHQ-------GAV 112 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h~-------~~v 112 (452)
+.+..+...+.++..-..+ . ++++|+| ++++++. .++.|.+||..+++.+..+.-.. ..-
T Consensus 63 ViD~~t~~v~~~I~vG~~P-~-va~spDG-~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 63 VIDGEAGRVIGMIDGGFLP-N-PVVADDG-SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp EEETTTTEEEEEEEECSSC-E-EEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEECCCCeEEEEEECCCCC-c-EEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence 3344455666666554455 4 9999999 7666654 36789999999999888875321 245
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeC
Q 012994 113 RGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNH 190 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~ 190 (452)
..++|+|||++|+++.. ++.|.++|+.+++......... ....... +.-..+..+++ |.+.+.++
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~-g~~~~~~~~~D--------G~~~~v~~ 206 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPT-APDTFFMHCRD--------GSLAKVAF 206 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEE-ETTEEEEEETT--------SCEEEEEC
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecC-CCceeEEECCC--------CCEEEEEC
Confidence 67999999999988864 6899999998886544332110 0000000 00011123333 45555555
Q ss_pred CC-CCcce----ecccCCCceE-EEEEC-CCCCcEEEEEecCCeEEEEEccCCC--CceEEE-----------eecccce
Q 012994 191 NR-SQPIN----SFQWGTDTVI-SVRFN-PAEPNVLATTASDRSITLYDLRMSS--PARKVI-----------MRTKSNS 250 (452)
Q Consensus 191 ~~-~~~~~----~~~~~~~~i~-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~-----------~~~~~~~ 250 (452)
.+ ++... .+.....++. ...|. +++ ++++ .+.+|.|.+.|+.+.. ....+. .......
T Consensus 207 ~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~ 284 (386)
T 3sjl_D 207 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 284 (386)
T ss_dssp CSSSCCEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred CCCCeEEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence 44 33211 1111112221 13453 444 4444 5558999999997654 233332 1223345
Q ss_pred EEEccCCCceEEeecC---------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC-EEEEE-eCCCeEEEEECC
Q 012994 251 ISWNPMEPMNFTAANE---------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTG-SYDRTIRIFQYN 319 (452)
Q Consensus 251 ~~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~-~~dg~i~iwd~~ 319 (452)
+.+++++..++++... ...|.++|..+.+....+..++ .+.+|++++|++ +|+++ ..++.|.++|..
T Consensus 285 ~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 285 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred eeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence 7788888888887542 3579999999988777766554 688999999997 66665 458999999999
Q ss_pred CCceeeeeccCCcCcEEEEEEcCC
Q 012994 320 GGRSREIYHTKRMQRVFCVKFSCD 343 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~v~~~~~s~~ 343 (452)
+++.+..+... +..+.|.+++|
T Consensus 363 t~k~~~~i~~~--~~p~~l~~s~d 384 (386)
T 3sjl_D 363 SGEELRSVNQL--GHGPQVITTAD 384 (386)
T ss_dssp TCCEEEEECCC--CSSCCEEEECC
T ss_pred CCcEEEEecCC--CCCceeEECCc
Confidence 99988877555 34556666665
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.60 E-value=5.1e-12 Score=110.26 Aligned_cols=236 Identities=10% Similarity=0.068 Sum_probs=163.3
Q ss_pred ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--C
Q 012994 106 SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--A 183 (452)
Q Consensus 106 ~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 183 (452)
..+...+.++++.++|+.+++...++.|.+||.. +....... ......+..+++.+++.++++.. +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~ 78 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPL-----------PTPDAKVMCLTISSDGEVWFTENAAN 78 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEC-----------SSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecC-----------CcccCceeeEEECCCCCEEEeCCCCC
Confidence 3455689999999999877776667899999986 43211000 01124577889999999888865 5
Q ss_pred eEEEEeCCCCCcceecc--cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCC
Q 012994 184 QVDIWNHNRSQPINSFQ--WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEP 258 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~ 258 (452)
.+..|+.. ++ ...+. .....+.++++.+++ .++++...++.|..||. ++.. ..+... ..+..+++.+++
T Consensus 79 ~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~~~~g- 152 (299)
T 2z2n_A 79 KIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKI-REYELPNKGSYPSFITLGSDN- 152 (299)
T ss_dssp EEEEECTT-SC-EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECTTS-
T ss_pred eEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCE-EEecCCCCCCCCceEEEcCCC-
Confidence 69999876 33 22222 234578899999977 67777777889999998 4332 222222 345678888877
Q ss_pred ceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
.++++...++.+..+|. +..............+.+++++++|++.++...++.|.+||. ++.............+.++
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeE
Confidence 45666667789999998 332222112234456889999999997777767889999999 6654433222233678999
Q ss_pred EEcCCCCEEEEeeCCCcEEEeec
Q 012994 339 KFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
+++++|+++++...++.|..|+.
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEeccCCceEEEECC
Confidence 99999997776667889999998
No 200
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.59 E-value=1.4e-13 Score=121.88 Aligned_cols=271 Identities=7% Similarity=-0.057 Sum_probs=175.3
Q ss_pred ceEEEeeCCC----cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe----------CCCcEEEEeCCCCCCCC
Q 012994 80 KGFFSGSMDG----DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG----------TDCTVKLWNVPVATLTD 145 (452)
Q Consensus 80 ~~l~tg~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~----------~dg~v~iwd~~~~~~~~ 145 (452)
..+++-..++ +|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||+.+++...
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~ 110 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA 110 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence 3444444444 8889999999999998765566 799999999998886 36899999998875433
Q ss_pred CCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC----CeEEE--EeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 146 SDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG----AQVDI--WNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~i--~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
.......... ........+.++|+|++++.+. ..+.+ +|..+ +..+... +. ..+.|++...+
T Consensus 111 ~I~v~~~~~~-----~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~ 178 (368)
T 1mda_H 111 DIELPDAPRF-----SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATH 178 (368)
T ss_dssp EEEETTSCSC-----CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEE
T ss_pred EEECCCcccc-----ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEE
Confidence 2211100000 0012345789999998877753 35888 89877 3444321 11 22345565677
Q ss_pred EEEecCCeEEEEEccC-----CCCce----EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-cceeee-C-
Q 012994 220 ATTASDRSITLYDLRM-----SSPAR----KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE-AKCVHM-G- 287 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~-~- 287 (452)
++.+.||.+.+.|+.+ ++... .+....... . .+++..++++.. +.+...|...... ...... .
T Consensus 179 ~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~ 253 (368)
T 1mda_H 179 YLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNE 253 (368)
T ss_dssp ECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSC
T ss_pred EEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecc
Confidence 7778899988888876 22221 011111111 3 566665555555 8899999854211 100000 0
Q ss_pred -----c---ccceEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-EEEE
Q 012994 288 -----H---ESAVMDIDYSPTGREFVTGSY---------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-YVIS 349 (452)
Q Consensus 288 -----~---~~~v~~~~~s~~g~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 349 (452)
+ ......++++|+|+.++.+.. ++.+.++|+.+++.+..+..+ .....++|+|||+ ++++
T Consensus 254 ~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEE
T ss_pred ccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEE
Confidence 0 011122689999998876543 235669999999888777655 3689999999998 4556
Q ss_pred ee-CCCcEEEeecccccccccCC
Q 012994 350 GS-DDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 350 ~~-~dg~i~iw~~~~~~~~~~~~ 371 (452)
.. .++.|.++|+.+++.+..+.
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECC
T ss_pred ccCCCCeEEEEECCCCcEEEEEE
Confidence 66 58999999999999988775
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.59 E-value=3e-13 Score=132.14 Aligned_cols=257 Identities=12% Similarity=0.069 Sum_probs=159.9
Q ss_pred cccccEEEEEeCCCCcceEEE-----eeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 64 GHRDGISCMAKNPNYLKGFFS-----GSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~t-----g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
+|...+..++||||| ++||- |+.+..|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg-~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~------ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDG-RILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKP------ 196 (693)
T ss_dssp TSCCEEEEEEECTTS-SEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCC------
T ss_pred CCcEEEEEEEECCCC-CEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCc------
Confidence 466678999999999 77763 3334579999999998654311 11113578999 9999998887743
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCc----ceeccc-CCCceEEEEEC
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQP----INSFQW-GTDTVISVRFN 212 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~----~~~~~~-~~~~i~~~~~~ 212 (452)
..+. .-... ...|.+|++.+... +..... +.....++.|+
T Consensus 197 ~~~~----------------------------------~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S 242 (693)
T 3iuj_A 197 DGSE----------------------------------LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT 242 (693)
T ss_dssp C-----------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC
T ss_pred cccc----------------------------------ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc
Confidence 0000 00000 11244444444322 222222 33456789999
Q ss_pred CCCCcEEEEEec---CCeEEEEEccCCC-CceEEEeecccceEEEccCCCceEEeecCC---CeEEEEeCCCccc-ccee
Q 012994 213 PAEPNVLATTAS---DRSITLYDLRMSS-PARKVIMRTKSNSISWNPMEPMNFTAANED---CNCYSYDSRKLDE-AKCV 284 (452)
Q Consensus 213 ~~~~~~l~~~~~---dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~~~~-~~~~ 284 (452)
|++..++++.+. ++.|.++|+.+.. ....+..........+++++..+++....+ +.|+.+|+..... ....
T Consensus 243 pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 243 EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 999655555543 3589999998764 344444443333334777788777776554 6899999887543 1123
Q ss_pred eeCcccceEEEEEcCCCCEEEEEeCCC---eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC----CcEE
Q 012994 285 HMGHESAVMDIDYSPTGREFVTGSYDR---TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDD----TNLR 357 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~ 357 (452)
+..|...+. .|+++++.|+....++ .|++||+..+.. ..+.....+.+..+.+++++..|+....+ +.|.
T Consensus 323 l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~ 399 (693)
T 3iuj_A 323 LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLY 399 (693)
T ss_dssp EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEE
T ss_pred EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEE
Confidence 445555554 8899998887666543 689999986543 33333333568888888888766654443 7899
Q ss_pred Eeecccccc
Q 012994 358 LWKAKASEQ 366 (452)
Q Consensus 358 iw~~~~~~~ 366 (452)
.||+.+++.
T Consensus 400 ~~d~~~g~~ 408 (693)
T 3iuj_A 400 RFEPKSGAI 408 (693)
T ss_dssp EECTTTCCE
T ss_pred EEECCCCeE
Confidence 999877653
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=3.4e-12 Score=114.37 Aligned_cols=253 Identities=9% Similarity=0.005 Sum_probs=163.6
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecC-------CCCe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGAV 112 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v 112 (452)
+.+..+...+.++.....+ .++++||| ++++++. .++.|.+||..+.+.+..+... ...-
T Consensus 51 v~D~~t~~~~~~i~~g~~p--~i~~spDg-~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p 127 (373)
T 2mad_H 51 VLDAGSGSILGHVNGGFLP--NPVAAHSG-SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS 127 (373)
T ss_pred EEECCCCeEEEEecCCCCC--CeEECCCC-CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCc
Confidence 3444455566666544444 99999999 7777765 3678999999988887766432 1234
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEEEeCCCCCCCCC-CCCCCCCCCCeeEEEecCCeeeeeecCCCC---eEEEeCCeEE
Q 012994 113 RGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDS-DDSTDNSSEPLAVYVWKNSFWAVDHQWEGD---LFATAGAQVD 186 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~ 186 (452)
..+.|+|||++|+++.. ++.|.++| .+++.... .... .. +.+.+++. ...+.++.+.
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-------------~~---~~~~~~~~~~~~~~~~dg~~~ 190 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-------------TC---YHIHPGAPSTFYLLCAQGGLA 190 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-------------ce---EEEEeCCCceEEEEcCCCCEE
Confidence 58999999999998874 47899999 88765433 2211 11 22223332 2223346788
Q ss_pred EEeCCCCCcceecc-----cCCCce-EEEEECCCCCcEEEEEecCCeEEEEEccCCCC--ceEEEe-----------ecc
Q 012994 187 IWNHNRSQPINSFQ-----WGTDTV-ISVRFNPAEPNVLATTASDRSITLYDLRMSSP--ARKVIM-----------RTK 247 (452)
Q Consensus 187 i~d~~~~~~~~~~~-----~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~-----------~~~ 247 (452)
++|. +++...... ....++ ....+.+++..++++. .++.+.+.|+..... ...+.. ...
T Consensus 191 ~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g 268 (373)
T 2mad_H 191 KTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG 268 (373)
T ss_pred EEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCc
Confidence 8888 766553221 111221 2344556654444444 678999999865432 122211 111
Q ss_pred cceEEEccCCCceEEeecC---------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC-EEEEEe-CCCeEEEE
Q 012994 248 SNSISWNPMEPMNFTAANE---------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS-YDRTIRIF 316 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~---------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~iw 316 (452)
...+.++|++..++++... .+.|.++|..+.+....+..++ ...+++|+|||+ .++++. .++.|.+|
T Consensus 269 ~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--~p~~i~~s~Dg~~~l~v~~~~~~~V~Vi 346 (373)
T 2mad_H 269 WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--DVDAISVAQDGGPDLYALSAGTEVLHIY 346 (373)
T ss_pred eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--CcCeEEECCCCCeEEEEEcCCCCeEEEE
Confidence 2237788988887776542 4689999998877666554333 578999999999 777777 58999999
Q ss_pred ECCCCceeee
Q 012994 317 QYNGGRSREI 326 (452)
Q Consensus 317 d~~~~~~~~~ 326 (452)
|+.+++.+..
T Consensus 347 D~~t~~vv~~ 356 (373)
T 2mad_H 347 DAGAGDQDQS 356 (373)
T ss_pred ECCCCCEEee
Confidence 9999988766
No 203
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=9.9e-13 Score=114.72 Aligned_cols=209 Identities=9% Similarity=0.073 Sum_probs=143.1
Q ss_pred ceEEEeecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE
Q 012994 100 RTVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 100 ~~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
..+..+..+.....+++|+|+++ +++++..++.|..||...+
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~------------------------------------- 60 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ------------------------------------- 60 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-------------------------------------
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-------------------------------------
Confidence 33445555667788999999998 7778888889999997532
Q ss_pred EEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-----ecccceEEE
Q 012994 179 ATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-----RTKSNSISW 253 (452)
Q Consensus 179 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~~~~~ 253 (452)
...+..+...+.++++++++ .++++...++.|.+||..+++....... ...+..+++
T Consensus 61 -----------------~~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~ 122 (296)
T 3e5z_A 61 -----------------LSPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCL 122 (296)
T ss_dssp -----------------EEEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEE
T ss_pred -----------------eEEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEE
Confidence 11222234568899999988 6776666678999999877664332211 123467899
Q ss_pred ccCCCceEEe---ec-------------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 254 NPMEPMNFTA---AN-------------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 254 ~~~~~~~~~~---~~-------------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
.|++...+.. ++ ..+.++.++.. ... .....+......++|+|+|+.|++.+.++.|.+|+
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~ 199 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTL-SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYC 199 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCE-EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCE-EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEE
Confidence 9988643332 22 13577777765 222 22335556778999999999987777889999999
Q ss_pred CC-CCce---eeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 318 YN-GGRS---REIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 318 ~~-~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+. ++.. ...+ ......+.+++++++|+++++. ++.|.+|+.. ++.+..+
T Consensus 200 ~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 200 LNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp ECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred ECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE
Confidence 97 4544 2333 3334567789999999977665 7899999986 6665444
No 204
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=5.7e-13 Score=114.29 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=148.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEec--CCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcce
Q 012994 120 DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWK--NSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPIN 197 (452)
Q Consensus 120 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~ 197 (452)
.++.|++++.|+.|.+||..+++.+..+ ... ..+..+.+.|+|+++++.++.+..||. +++.+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~-------------~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEY-------------PLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELW 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEE-------------ECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEe-------------CCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEE
Confidence 3578999999999999999888543322 222 256788899999999977788999999 888888
Q ss_pred ecccCC-CceEEEEECCCCCcEEEEEec-CCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 198 SFQWGT-DTVISVRFNPAEPNVLATTAS-DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 198 ~~~~~~-~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
.+..+. ..+.++.+.+++ +++++.+. ++.|..+|. +++.+..+......
T Consensus 70 ~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~--------------------------- 120 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTEFETGI--------------------------- 120 (276)
T ss_dssp EEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEEECCSC---------------------------
T ss_pred EEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCC---------------------------
Confidence 887653 478889999988 67777766 677777764 44444433211000
Q ss_pred CCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 276 RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
..+......+++.++|+++++...++.|..||.. |+.+..+... ..+.++.+.++|+++++++.++.
T Consensus 121 ----------~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~ 187 (276)
T 3no2_A 121 ----------ERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHC 187 (276)
T ss_dssp ----------SSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSE
T ss_pred ----------CcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCe
Confidence 0122234456789999999999999999999998 8888777554 34667888999999999998889
Q ss_pred EEEeecccccccccCCh
Q 012994 356 LRLWKAKASEQLGVLHP 372 (452)
Q Consensus 356 i~iw~~~~~~~~~~~~~ 372 (452)
|..+|..+|+.+..+..
T Consensus 188 v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 188 FVQLNLESNRIVRRVNA 204 (276)
T ss_dssp EEEECTTTCCEEEEEEG
T ss_pred EEEEeCcCCcEEEEecC
Confidence 99999999999877753
No 205
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.56 E-value=1.4e-12 Score=115.58 Aligned_cols=225 Identities=10% Similarity=0.076 Sum_probs=150.7
Q ss_pred hhhhhccccccccc-cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-eEEEe---------ecCCCCeeEEEEc
Q 012994 50 LEKIFARPFIGALD-GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-TVCQY---------SGHQGAVRGLTVS 118 (452)
Q Consensus 50 ~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~ 118 (452)
+++..++.++..+. ++-.....++++|+| +++++...++.|++||..... .+..+ .++-.....|+++
T Consensus 73 ~~d~~~g~~~~~~~~~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~ 151 (329)
T 3fvz_A 73 VIDPNNAEILQSSGKNLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVE 151 (329)
T ss_dssp EECTTTCCEEEEECTTTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEEC
T ss_pred EEECCCCeEEeccCCCccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEe
Confidence 33433444444443 455689999999998 888888889999999976442 44554 2344578999999
Q ss_pred c-CCCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc
Q 012994 119 T-DGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI 196 (452)
Q Consensus 119 ~-~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~ 196 (452)
| ++.++++.+ .++.|.+||. .+... ...... + .+.
T Consensus 152 ~~~g~lyv~d~~~~~~I~~~~~-~g~~~-------------~~~~~~------------------g---------~~~-- 188 (329)
T 3fvz_A 152 PSTGAVFVSDGYCNSRIVQFSP-SGKFV-------------TQWGEE------------------S---------SGS-- 188 (329)
T ss_dssp TTTCCEEEEECSSCCEEEEECT-TSCEE-------------EEECEE------------------C---------CSS--
T ss_pred CCCCeEEEEeCCCCCeEEEEcC-CCCEE-------------EEeccC------------------C---------CCC--
Confidence 9 788777776 6899999994 22110 000000 0 000
Q ss_pred eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCceEE-------eecC
Q 012994 197 NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMNFT-------AANE 266 (452)
Q Consensus 197 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~~~ 266 (452)
.....+-.....++++|+++.++++...++.|++||..+++.+..+... .....++++| ..++. +...
T Consensus 189 ~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~ 266 (329)
T 3fvz_A 189 SPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQE 266 (329)
T ss_dssp SCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSC
T ss_pred CCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCC
Confidence 0000112347889999985588888889999999999877766665422 3345677777 22222 2334
Q ss_pred CCeEEEEeCCCccccceee--eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 267 DCNCYSYDSRKLDEAKCVH--MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 267 ~~~i~~~d~~~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
+..+++|+..+........ .++...+.+++++|+|.++++...++.|++|++..
T Consensus 267 ~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 267 PVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 5589999987655443321 35667789999999998888888899999999864
No 206
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.54 E-value=2e-13 Score=121.18 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=124.7
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCc-----------eEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRR-----------TVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
.++.+++++.. .++++|+.++ +.+|++.+.+ ..... .+.+ |++|+| |+++|+++ .++.|++|
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 68999999998 8999999885 5569865433 11222 3666 999999 88999998 88999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
|+.+... ......+...+.++.+.+.
T Consensus 112 dv~sl~~----------------------------------------------------~~~~~~~~~~v~~i~~~~p-- 137 (388)
T 1xip_A 112 DLEELSE----------------------------------------------------FRTVTSFEKPVFQLKNVNN-- 137 (388)
T ss_dssp ESSSTTC----------------------------------------------------EEEEEECSSCEEEEEECSS--
T ss_pred Echhhhc----------------------------------------------------cCccceeecceeeEEecCC--
Confidence 9865421 0111122344566666543
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
+ ++++..||.|.+||+..+.... +...|++++
T Consensus 138 ~-~av~~~dG~L~v~dl~~~~~~~-----------------------------------------------~~~~Vs~v~ 169 (388)
T 1xip_A 138 T-LVILNSVNDLSALDLRTKSTKQ-----------------------------------------------LAQNVTSFD 169 (388)
T ss_dssp E-EEEEETTSEEEEEETTTCCEEE-----------------------------------------------EEESEEEEE
T ss_pred C-EEEEECCCCEEEEEccCCcccc-----------------------------------------------ccCCceEEE
Confidence 2 7788999999999997654321 234689999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCce--eeee------c--cCCcCcEEEEEEcCCCCEEEE
Q 012994 297 YSPTGREFVTGSYDRTIRIFQYNGGRS--REIY------H--TKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 297 ~s~~g~~l~s~~~dg~i~iwd~~~~~~--~~~~------~--~~~~~~v~~~~~s~~~~~l~s 349 (452)
|||+| ++.|..||.+++|+...+.. ...+ . ..+...|.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 67889999999999887764 3333 1 124578999999999999887
No 207
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=1.8e-12 Score=127.33 Aligned_cols=240 Identities=11% Similarity=0.012 Sum_probs=145.9
Q ss_pred CCCcceEEEee-CCC----cEEEEeCCCCceEEEee------cCCCCeeEEEEccCCCeEEEEeCCC-----cEEEEeCC
Q 012994 76 PNYLKGFFSGS-MDG----DIRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILVSCGTDC-----TVKLWNVP 139 (452)
Q Consensus 76 ~~~~~~l~tg~-~dg----~i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~s~~~dg-----~v~iwd~~ 139 (452)
|+| .+++... ..+ .+.+.+...++....+. +|...+..++|||||++|+.++.++ .|++||+.
T Consensus 81 ~dG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KKG-KRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EET-TEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EEC-CEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 788 5554333 222 34444544444332221 2444688999999999998776543 78999987
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
+++.. ...... ..+.+++|+|++ +.|
T Consensus 160 tg~~~-------------~~~~~~----------------------------------------~~~~~~~wspDg-~~l 185 (710)
T 2xdw_A 160 GAKEL-------------PDVLER----------------------------------------VKFSCMAWTHDG-KGM 185 (710)
T ss_dssp TTEEE-------------EEEEEE----------------------------------------ECSCCEEECTTS-SEE
T ss_pred CCCCC-------------cccccC----------------------------------------cccceEEEEeCC-CEE
Confidence 66321 000000 113345666665 344
Q ss_pred EEEecCC----------------eEEEEEccCCCCceEEEeec-----ccceEEEccCCCceEEeecC----CCeEEEEe
Q 012994 220 ATTASDR----------------SITLYDLRMSSPARKVIMRT-----KSNSISWNPMEPMNFTAANE----DCNCYSYD 274 (452)
Q Consensus 220 ~~~~~dg----------------~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~i~~~d 274 (452)
+.++.++ .|++|++.++.....+.... ....+.|+|++..+++.... +..++++|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d 265 (710)
T 2xdw_A 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCD 265 (710)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEE
T ss_pred EEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEE
Confidence 4444443 39999998776443333221 23578999999987776642 56899999
Q ss_pred CCC------ccccceeeeCcccceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCce--eeeeccCCc-CcEEEEEEc
Q 012994 275 SRK------LDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD----RTIRIFQYNGGRS--REIYHTKRM-QRVFCVKFS 341 (452)
Q Consensus 275 ~~~------~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~-~~v~~~~~s 341 (452)
+.. .......+..+...+.. .|+|+|+.|+..+.+ +.|.+||+.++.. ...+..+.. ..+..++|+
T Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 266 LQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp GGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred CcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence 876 32223344455555554 488999887766543 3699999987642 222222322 368889999
Q ss_pred CCCCEEEEeeCCCc--EEEeecccccccccCC
Q 012994 342 CDASYVISGSDDTN--LRLWKAKASEQLGVLH 371 (452)
Q Consensus 342 ~~~~~l~s~~~dg~--i~iw~~~~~~~~~~~~ 371 (452)
+++.++++...|+. |.+|++.+|+.+..+.
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGALLKIFP 376 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence 88888888888885 5566765676554443
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.53 E-value=6.5e-13 Score=118.31 Aligned_cols=272 Identities=8% Similarity=0.035 Sum_probs=171.8
Q ss_pred ccEEEEEeCCCCcceEEEee--CCCcEEEEeCCCCceEEEe-------ecCCCCeeEEEEccCCCeEEEEeC-----CCc
Q 012994 67 DGISCMAKNPNYLKGFFSGS--MDGDIRLWDIANRRTVCQY-------SGHQGAVRGLTVSTDGRILVSCGT-----DCT 132 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~--~dg~i~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~~~~~l~s~~~-----dg~ 132 (452)
..+..++++|+| +++++.. .++.+.||.+.+++. ..+ ..|-..+.+++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 689999999998 8888753 234355555545543 222 134568999999999875554433 578
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CCeEEEe-----CCeEEEEeCCCCCcceecccCCCce
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATA-----GAQVDIWNHNRSQPINSFQWGTDTV 206 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~~~~i 206 (452)
|.+||+.+++............ .....+..++++++ +.++++. .+.|.+||..+++....+..|....
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~------~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPIT------LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTS------CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred EEEEECCCCeEEEEEECChhhc------ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 9999998775432221110000 01123467788865 4555553 3469999999887766654432211
Q ss_pred E-EEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-----
Q 012994 207 I-SVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE----- 280 (452)
Q Consensus 207 ~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----- 280 (452)
. ...+.+++ ..+.+.+.+|.+..|. .....++++|++..++++......++.++......
T Consensus 169 ~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 169 PEDIDLVIDG-VPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp CCSCCCEETT-EECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH
T ss_pred ccccceeECC-EEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh
Confidence 0 02233344 4555667777776653 13467899999988777777777888887532110
Q ss_pred --c--ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 281 --A--KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 281 --~--~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
. .....++......++++++|+++++...++.|.+||..+++............+++++|.+++.++++.+..+.+
T Consensus 235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp HHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred hhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 0 001113334567899999999999988899999999956665433333234568999999999888877655555
Q ss_pred EEee
Q 012994 357 RLWK 360 (452)
Q Consensus 357 ~iw~ 360 (452)
.+|.
T Consensus 315 ~~f~ 318 (343)
T 2qe8_A 315 APLN 318 (343)
T ss_dssp GGGB
T ss_pred cccc
Confidence 4443
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.52 E-value=5.5e-11 Score=104.97 Aligned_cols=223 Identities=11% Similarity=0.031 Sum_probs=149.4
Q ss_pred CeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEe
Q 012994 111 AVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (452)
Q Consensus 111 ~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (452)
-..+..|+|++. ++++...++.|..||..++.. ........+.++.+++++.++++....+.+||
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--------------~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d 115 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--------------TVHALPFMGSALAKISDSKQLIASDDGLFLRD 115 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--------------EEEECSSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--------------EEEECCCcceEEEEeCCCeEEEEECCCEEEEE
Confidence 346788999754 556666788999999876532 12223456788899999999888877799999
Q ss_pred CCCCCcceeccc----CCCceEEEEECCCCCcEEEEEec------CCeEEEEEccCCCCceEEEeecccceEEEccCCCc
Q 012994 190 HNRSQPINSFQW----GTDTVISVRFNPAEPNVLATTAS------DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPM 259 (452)
Q Consensus 190 ~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (452)
..+++....... ....+.+++++|++ +++++... .+.|..+| +++.............++|+|++..
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCE
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCE
Confidence 988764332211 12468899999988 56554432 24455555 3332222222344578999999998
Q ss_pred eEEeecCCCeEEEEeCC--Cc-cc--ccee--eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCc
Q 012994 260 NFTAANEDCNCYSYDSR--KL-DE--AKCV--HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRM 332 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~--~~-~~--~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 332 (452)
++++...++.|+.||.. +. .. .... .......+..++++++|++.++...++.|..||. +++....+....
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~- 270 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPG- 270 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSC-
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCC-
Confidence 88888888999999975 32 11 1111 1123345778999999988777767788999998 466555554332
Q ss_pred CcEEEEEEc-CCCCEEEEeeC
Q 012994 333 QRVFCVKFS-CDASYVISGSD 352 (452)
Q Consensus 333 ~~v~~~~~s-~~~~~l~s~~~ 352 (452)
..+++++|+ ++++.|+.++.
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEB
T ss_pred CCcEEEEEecCCCCEEEEEec
Confidence 569999998 88877655443
No 210
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=5e-12 Score=123.86 Aligned_cols=235 Identities=10% Similarity=0.057 Sum_probs=144.9
Q ss_pred CCCCcceEEEeeCCC---c--EEEEeCCCCceEEEee------cCCCCeeEEEEccCCCeEE-----EEeCCCcEEEEeC
Q 012994 75 NPNYLKGFFSGSMDG---D--IRLWDIANRRTVCQYS------GHQGAVRGLTVSTDGRILV-----SCGTDCTVKLWNV 138 (452)
Q Consensus 75 ~~~~~~~l~tg~~dg---~--i~iwd~~~~~~~~~~~------~h~~~v~~l~~~~~~~~l~-----s~~~dg~v~iwd~ 138 (452)
+|+| .+++....++ . |.+.+...++....+. +|...+.+++|||||++|| .|+.+..|++||+
T Consensus 76 ~~dG-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 76 SRRN-GRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EEET-TEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EEEC-CEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 3788 6666554433 2 4444544554333332 3555789999999999998 3444568999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcE
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (452)
.+++..... .+. ......++|+|++ ..
T Consensus 155 ~tg~~~~~~--------------------------------------------------~~~--~~~~~~~~wspDg-~~ 181 (695)
T 2bkl_A 155 DSGEWSKVD--------------------------------------------------VIE--GGKYATPKWTPDS-KG 181 (695)
T ss_dssp TTCCBCSSC--------------------------------------------------CBS--CCTTCCCEECTTS-SE
T ss_pred CCCCCcCCc--------------------------------------------------ccC--cccccceEEecCC-CE
Confidence 877432000 000 0111457788877 45
Q ss_pred EEEEecCCe-------------EEEEEccCCCCceEEEee-----cccceEEEccCCCceEEeecCC---CeEEEEeCCC
Q 012994 219 LATTASDRS-------------ITLYDLRMSSPARKVIMR-----TKSNSISWNPMEPMNFTAANED---CNCYSYDSRK 277 (452)
Q Consensus 219 l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~i~~~d~~~ 277 (452)
|+.++.|.. |++|++.++.....+... .....+.|+|++..++++.... ..+++++...
T Consensus 182 l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~ 261 (695)
T 2bkl_A 182 FYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE 261 (695)
T ss_dssp EEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC
T ss_pred EEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC
Confidence 666666554 999999887644333322 2446889999998877766544 3667776543
Q ss_pred ccccceeeeCcccceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCce---eeeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 278 LDEAKCVHMGHESAVMDIDYSPTGREFVTGS---YDRTIRIFQYNGGRS---REIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
. . ...+..+...+....+ ++|.+++.+. .++.|.+||+.++.. ...+.......+..++|+ ++.++++..
T Consensus 262 ~-~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 262 K-D-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp S-S-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred C-c-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence 2 2 2233344455566666 5666444443 258899999987653 233322223568889998 778888999
Q ss_pred CCCcEEEeecc-ccccc
Q 012994 352 DDTNLRLWKAK-ASEQL 367 (452)
Q Consensus 352 ~dg~i~iw~~~-~~~~~ 367 (452)
.|+..+||.+. +++.+
T Consensus 338 ~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPV 354 (695)
T ss_dssp ETTEEEEEEEETTCCEE
T ss_pred ECCEEEEEEEeCCCCee
Confidence 99998888765 34433
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=2.3e-10 Score=99.72 Aligned_cols=236 Identities=8% Similarity=0.023 Sum_probs=162.6
Q ss_pred cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--Ce
Q 012994 107 GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQ 184 (452)
Q Consensus 107 ~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 184 (452)
.....+.++++.++|+..++...++.|.+||.. +..... . .......+..+++.+++.++++.. +.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-E----------VPTPDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------CSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-E----------CCCCCCcceeEEECCCCCEEEEecCCCe
Confidence 345678999999999877777678999999986 432110 0 000124567888899999888765 56
Q ss_pred EEEEeCCCCCcce-ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---cccceEEEccCCCce
Q 012994 185 VDIWNHNRSQPIN-SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---TKSNSISWNPMEPMN 260 (452)
Q Consensus 185 i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 260 (452)
|..||.. ++... ........+.++++.+++ .++++...++.|..||.. +... .+... .....+++.+++. +
T Consensus 85 v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~-l 159 (300)
T 2qc5_A 85 IGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNA-L 159 (300)
T ss_dssp EEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSS-E
T ss_pred EEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCC-E
Confidence 9999987 54321 222234678899999877 677777668899999986 3322 23222 3456788888776 5
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
+++...++.+..+|.. ..........+...+.+++++++|++.++....+.|.+||. ++.............+.++++
T Consensus 160 ~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 160 WFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 6666667889999883 22222222234456889999999987777767788999998 454443322223366899999
Q ss_pred cCCCCEEEEeeCCCcEEEeec
Q 012994 341 SCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 341 s~~~~~l~s~~~dg~i~iw~~ 361 (452)
+++|++.++...++.|..|+.
T Consensus 238 d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 238 GKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp CSTTCEEEEETTTTEEEEECT
T ss_pred CCCCCEEEeccCCCeEEEECC
Confidence 999997777666789999998
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.50 E-value=1.4e-11 Score=107.80 Aligned_cols=243 Identities=9% Similarity=-0.012 Sum_probs=155.3
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
...+..+..+........|+|++..+++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 34445566666778899999998337778888899999998 454 3455556778999999999986665555678999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAE 215 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 215 (452)
|+.. +... ..... ..+ .....+.++++.+++
T Consensus 112 ~~~~-g~~~-------------~~~~~----------------------------~~~-------~~~~~~~~i~~d~dG 142 (305)
T 3dr2_A 112 SDAD-GQAH-------------LLVGR----------------------------YAG-------KRLNSPNDLIVARDG 142 (305)
T ss_dssp ECTT-SCEE-------------EEECE----------------------------ETT-------EECSCCCCEEECTTS
T ss_pred ECCC-CCEE-------------EEEec----------------------------cCC-------CccCCCCCEEECCCC
Confidence 9874 3210 00000 000 001234557777766
Q ss_pred CcEEEE----Eec-------------CCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecC-----CCeEEEE
Q 012994 216 PNVLAT----TAS-------------DRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANE-----DCNCYSY 273 (452)
Q Consensus 216 ~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~ 273 (452)
+++++ |.. .+.|..||..+++..... .....+.++|+|++..++++... .+.|+.|
T Consensus 143 -~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~ 220 (305)
T 3dr2_A 143 -AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAF 220 (305)
T ss_dssp -CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEE
T ss_pred -CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEE
Confidence 45554 221 245777776655544433 33456789999999877776665 3789999
Q ss_pred eCCCcc--ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 274 DSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 274 d~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
+..... ...............++++++|++.+ ++.+| |.+|+.. ++....+.... .+.+++|+++++.|+.++
T Consensus 221 ~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~~-g~~~~~~~~~~--~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 221 AWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDSD-GQLLGHIPTPG--TASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECTT-SCEEEEEECSS--CCCEEEECTTSCEEEEEE
T ss_pred EecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECCC-CCEEEEEECCC--ceeEEEEeCCCCEEEEEc
Confidence 876432 11111111233456789999999544 44454 9999984 55555554443 588999999998888877
Q ss_pred CCCcE
Q 012994 352 DDTNL 356 (452)
Q Consensus 352 ~dg~i 356 (452)
.++..
T Consensus 296 ~~~l~ 300 (305)
T 3dr2_A 296 GPCLW 300 (305)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 76433
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=3.7e-11 Score=108.18 Aligned_cols=260 Identities=10% Similarity=0.019 Sum_probs=165.2
Q ss_pred HhhhhhccccccccccccccEEEEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecC-------CCC
Q 012994 49 KLEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGA 111 (452)
Q Consensus 49 ~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~ 111 (452)
.+.+..+...+.++..-..+ .++++||+ ++++++. .++.|.++|..+++.+..+.-. ...
T Consensus 102 sVID~~t~~vv~~I~vG~~P--gia~SpDg-k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 102 FVIDGSTGRILGMTDGGFLP--HPVAAEDG-SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp EEEETTTTEEEEEEEECSSC--EEEECTTS-SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred EEEECCCCEEEEEEECCCCC--ceEECCCC-CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 33444555666666544455 89999999 7666664 4678999999999988877521 234
Q ss_pred eeEEEEccCCCeEEEEeC--CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEe
Q 012994 112 VRGLTVSTDGRILVSCGT--DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (452)
...+.|+|||++|+++.. ++.|.+.|+.+.+......... ........ .-..+.++++ |.+.+.+
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g-~~~~v~~~~d--------G~~~~V~ 245 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPAS-PTVFYMNCRD--------GSLARVD 245 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEE-TTEEEEEETT--------SSEEEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCC-CcEEEEEcCC--------CCEEEEE
Confidence 567899999999998874 5789999998876543322110 00000000 0111223333 4455555
Q ss_pred CCCCCcce----ecccCCCce-EEEEECCCCCcEEEEEecCCeEEEEEccCCCCc--eEEE-----------eecccceE
Q 012994 190 HNRSQPIN----SFQWGTDTV-ISVRFNPAEPNVLATTASDRSITLYDLRMSSPA--RKVI-----------MRTKSNSI 251 (452)
Q Consensus 190 ~~~~~~~~----~~~~~~~~i-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-----------~~~~~~~~ 251 (452)
..+++... .+.....++ ..+.+.+++..+++ ....+.+.+.|+...... ..+. .......+
T Consensus 246 ~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~-~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 246 FADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW-PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE-EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred CCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE-EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 54333321 111111221 23466887754444 456789999998654321 1111 11222347
Q ss_pred EEccCCCceEEeec---------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC-EEEEEe-CCCeEEEEECCC
Q 012994 252 SWNPMEPMNFTAAN---------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR-EFVTGS-YDRTIRIFQYNG 320 (452)
Q Consensus 252 ~~~~~~~~~~~~~~---------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~s~~-~dg~i~iwd~~~ 320 (452)
.++|++..++++.. ..+.+.++|..+.+....+..+. ....++|+|||+ ++++.. .++.|.++|+.+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 89999888777753 24579999999887776665443 578999999999 888887 599999999999
Q ss_pred Cceeeee
Q 012994 321 GRSREIY 327 (452)
Q Consensus 321 ~~~~~~~ 327 (452)
++.+..+
T Consensus 403 ~kvv~tI 409 (426)
T 3c75_H 403 GEELRSV 409 (426)
T ss_dssp CCEEEEE
T ss_pred CCEEEEe
Confidence 9988775
No 214
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.46 E-value=1.1e-11 Score=106.36 Aligned_cols=200 Identities=10% Similarity=0.006 Sum_probs=138.5
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCC
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLT 144 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 144 (452)
+...+.++++++++ +++++.. ++.|.+||................+.++++.++|+++++...++.|.+|+..+....
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 34568899999998 6555555 889999998765443222223367899999999987777777889999976443211
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
.. ..........+++++++.++++.. +.|.+||............+...+.++++.+++ .++++.
T Consensus 143 ~~------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~ 209 (270)
T 1rwi_B 143 VL------------PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTE 209 (270)
T ss_dssp EC------------CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEE
T ss_pred ee------------ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEE
Confidence 10 001123456788999999887764 579999988765444333333678899999987 777777
Q ss_pred ecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCC
Q 012994 223 ASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGR 302 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 302 (452)
..++.|.+||........ ....+...+.+++++++|+
T Consensus 210 ~~~~~v~~~~~~~~~~~~-------------------------------------------~~~~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTV-------------------------------------------LPFTGLNTPLAVAVDSDRT 246 (270)
T ss_dssp TTTSCEEEECTTCSCCEE-------------------------------------------CCCCSCSCEEEEEECTTCC
T ss_pred CCCCcEEEEcCCCCccee-------------------------------------------eccCCCCCceeEEECCCCC
Confidence 778889999875432110 0001224578899999999
Q ss_pred EEEEEeCCCeEEEEECCCCc
Q 012994 303 EFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 303 ~l~s~~~dg~i~iwd~~~~~ 322 (452)
++++...++.|++|++...+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987544
No 215
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.45 E-value=1.9e-11 Score=118.40 Aligned_cols=280 Identities=8% Similarity=0.007 Sum_probs=182.1
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCC-----------eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA-----------VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
..+++++.++.|.-+|..+|+.+..+...... ...+++ ++..|+.++.|+.|..+|..+++......
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 56777778899999999999998887643210 112333 35678888999999999999987654433
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCCCc----------------
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTDT---------------- 205 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~---------------- 205 (452)
....... ...+...-.-.++.+++.. ++.|..+|..+++.+..+......
T Consensus 156 ~~~~~~~-------~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 156 TFEGQKG-------SLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp TTTTCCS-------SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred CCcCcCc-------CcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 2200000 0001100011134444433 357999999999887665432111
Q ss_pred ----------------eEEEEECCCCCcEEEEEecCC-------------------eEEEEEccCCCCceEEEeecc---
Q 012994 206 ----------------VISVRFNPAEPNVLATTASDR-------------------SITLYDLRMSSPARKVIMRTK--- 247 (452)
Q Consensus 206 ----------------i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~~--- 247 (452)
...+++.|++ .+++.+..++ .|..+|..+++....+.....
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~-~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w 307 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAEL-NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW 307 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred ccccCceeEeCCCcccccceeEcCCC-CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence 1246777776 5666666553 599999999998887764321
Q ss_pred -------cceEEEccCCC--ceEEeecCCCeEEEEeCCCccccceeeeCccc----------ce----------------
Q 012994 248 -------SNSISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGHES----------AV---------------- 292 (452)
Q Consensus 248 -------~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~v---------------- 292 (452)
...+....++. ..++.++.+|.++++|..+.+........... ++
T Consensus 308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P 387 (677)
T 1kb0_A 308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVP 387 (677)
T ss_dssp CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSS
T ss_pred ccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECc
Confidence 11222223443 56888899999999999876654332211100 01
Q ss_pred --------EEEEEcCCCCEEEEEeC-------------------------------------------CCeEEEEECCCC
Q 012994 293 --------MDIDYSPTGREFVTGSY-------------------------------------------DRTIRIFQYNGG 321 (452)
Q Consensus 293 --------~~~~~s~~g~~l~s~~~-------------------------------------------dg~i~iwd~~~~ 321 (452)
..++++|++.++++... .|.|..||+.++
T Consensus 388 ~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG 467 (677)
T 1kb0_A 388 GPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQ 467 (677)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTT
T ss_pred CcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCC
Confidence 15688998888877543 278999999999
Q ss_pred ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 322 RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 322 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
+.+...... .++....+..++.+++.++.||.+++||..+|+.+..+.
T Consensus 468 ~~~W~~~~~--~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 468 KAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cEEeecCCC--CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 988776543 344555566788889999999999999999999987664
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=2.6e-10 Score=99.22 Aligned_cols=233 Identities=8% Similarity=0.015 Sum_probs=151.2
Q ss_pred ccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCC
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~ 142 (452)
..+..--.+..|+|++..++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||..++.
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 344456678899997536777777889999999987765 3333 4578999999999995554 4 5689999987664
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-----------CeEEEEeCCCCCcceecccCCCceEEEEE
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-----------AQVDIWNHNRSQPINSFQWGTDTVISVRF 211 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 211 (452)
......... .. ....+..+.++++|.++++.. ....+|.+........+.......+.++|
T Consensus 85 ~~~~~~~~~--~~------~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~ 156 (297)
T 3g4e_A 85 AVVLATVDN--DK------KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDW 156 (297)
T ss_dssp EEEEEECCT--TC------SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEE
T ss_pred EEEEEecCC--CC------CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEE
Confidence 321100000 00 123456788999999877652 22355555433233333333455788999
Q ss_pred CCCCCcEEEEEecCCeEEEEEcc--CCCCce--EEE-e---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 212 NPAEPNVLATTASDRSITLYDLR--MSSPAR--KVI-M---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 212 ~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~--~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
+|++..++++.+.++.|.+||+. ++.... .+. . ...+..+++.+++ .++++....+.|..||..+.....
T Consensus 157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~~~~- 234 (297)
T 3g4e_A 157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGKRLQ- 234 (297)
T ss_dssp CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCCEEE-
T ss_pred cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCceEEE-
Confidence 99986566777778999999974 343211 111 1 1345678888887 456666777889999987544333
Q ss_pred eeeCcccceEEEEEc-CCCCEEEEEeC
Q 012994 284 VHMGHESAVMDIDYS-PTGREFVTGSY 309 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s-~~g~~l~s~~~ 309 (452)
....+...+++++|. |+++.|+.++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 333445678999998 88877665543
No 217
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.43 E-value=3.4e-11 Score=116.86 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=178.2
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCC----------e-eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA----------V-RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
..+++++.++.|..+|..+|+.+..+..+... + ..+.. .+..|+.++.|+.|..+|..+++......
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 56778888999999999999998887643221 0 11222 35678888999999999999987654332
Q ss_pred CC-CCCCCCeeEEEecCCeeeeeec---CCCCeEEEe-------CCeEEEEeCCCCCcceecccCC--------------
Q 012994 149 ST-DNSSEPLAVYVWKNSFWAVDHQ---WEGDLFATA-------GAQVDIWNHNRSQPINSFQWGT-------------- 203 (452)
Q Consensus 149 ~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~-------------- 203 (452)
.. ... ....+..+ .++.+++.. ++.+..||..+++.+..+....
T Consensus 149 ~~~~~~-----------~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~ 217 (689)
T 1yiq_A 149 TRADHK-----------RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEI 217 (689)
T ss_dssp CCSCTT-----------SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHH
T ss_pred CcCCCC-----------CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccc
Confidence 21 000 00001111 144444432 2569999999998876654210
Q ss_pred -----------------CceEEEEECCCCCcEEEEEecCCe-------------------EEEEEccCCCCceEEEeecc
Q 012994 204 -----------------DTVISVRFNPAEPNVLATTASDRS-------------------ITLYDLRMSSPARKVIMRTK 247 (452)
Q Consensus 204 -----------------~~i~~~~~~~~~~~~l~~~~~dg~-------------------i~i~d~~~~~~~~~~~~~~~ 247 (452)
..-..+++.|.. .+++.+..++. |..+|..+++....+.....
T Consensus 218 ~~~~~~g~~w~~~~~g~~~w~~~~~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~ 296 (689)
T 1yiq_A 218 AAKTWFGDAYVEQGGGGTAWDSFAYDPEL-NLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG 296 (689)
T ss_dssp HHTTCCSSTHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred cccccCCceeeecCCCCccccceeEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence 011246777776 57777877763 99999999998887764311
Q ss_pred ----------cceEEEccCCC--ceEEeecCCCeEEEEeCCCccccceeeeCccc-------------------------
Q 012994 248 ----------SNSISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGHES------------------------- 290 (452)
Q Consensus 248 ----------~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~------------------------- 290 (452)
........++. ..++.++.+|.++.+|..+.+...........
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 11111112332 35778889999999999876554211111000
Q ss_pred -------------ceEEEEEcCCCCEEEEEeC---------------------------------------------CCe
Q 012994 291 -------------AVMDIDYSPTGREFVTGSY---------------------------------------------DRT 312 (452)
Q Consensus 291 -------------~v~~~~~s~~g~~l~s~~~---------------------------------------------dg~ 312 (452)
.-..++++|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0113688888777776532 378
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
|..||+.+++.+.....+ .+.....++..+.++++|+.||.|+.||..+|+.+..+.
T Consensus 457 l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 999999999988776544 233334566678899999999999999999999986553
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.38 E-value=4.9e-11 Score=105.62 Aligned_cols=261 Identities=8% Similarity=-0.072 Sum_probs=162.4
Q ss_pred hhhhhccccccccccccccEEEEEeCCCCcceEEEee----------CCCcEEEEeCCCCceEEEeecC-------CCCe
Q 012994 50 LEKIFARPFIGALDGHRDGISCMAKNPNYLKGFFSGS----------MDGDIRLWDIANRRTVCQYSGH-------QGAV 112 (452)
Q Consensus 50 ~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~----------~dg~i~iwd~~~~~~~~~~~~h-------~~~v 112 (452)
+.+..+.+.+.++..-..+ .++++||+ ++++++. .++.|.+||..+++.+..+..+ ....
T Consensus 50 vID~~t~~v~~~i~vG~~P--~i~~spDg-~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 50 VSCAGCGVTLGHSLGAFLS--LAVAGHSG-SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEETTTTEEEEEEEECTTC--EEEECTTS-SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEECCCCeEEEEEeCCCCC--ceEECCCC-CEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 3344556667777544555 79999999 7777665 3789999999999999988643 1246
Q ss_pred eEEEEccCCCeEEEEeC--CCcEEE--EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEE--eCCeE
Q 012994 113 RGLTVSTDGRILVSCGT--DCTVKL--WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFAT--AGAQV 185 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~--dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~i 185 (452)
..++++|||++|+++.. +..|.+ +|+.+ . ........ ....+++. .+++ .++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v-------------~~i~v~~~---~~~~p~g~~~~~~~~~dg~~ 187 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---D-------------QLTKSASC---FHIHPGAAATHYLGSCPASL 187 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---E-------------EEEECSSC---CCCEEEETTEEECCCCTTSC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---c-------------eEEECCCc---eEEccCCCeEEEEEcCCCCE
Confidence 78999999999998874 457888 99854 1 11111110 11122222 1111 22455
Q ss_pred EEEeCCC-----CCcce----ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC--ceEEEe----------
Q 012994 186 DIWNHNR-----SQPIN----SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP--ARKVIM---------- 244 (452)
Q Consensus 186 ~i~d~~~-----~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~---------- 244 (452)
.+.++.+ ++... .+.....+. . .++++.++ ..+. +.+.+.|+..... ...+..
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~-~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLV-WAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEE-ECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEE-EEcC-CEEEEEECCCCcceEEEEEEecccccccccc
Confidence 5666665 32221 122223333 3 55554444 4444 8999999865321 111111
Q ss_pred -ecccceEEEccCCCceEEeec---C-----CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCE-EEEEe-CCCeE
Q 012994 245 -RTKSNSISWNPMEPMNFTAAN---E-----DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE-FVTGS-YDRTI 313 (452)
Q Consensus 245 -~~~~~~~~~~~~~~~~~~~~~---~-----~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~s~~-~dg~i 313 (452)
......+.++|++..++++.. . ...+.++|..+.+....+..+. ....++|+|||+. +++.. .++.|
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~V 339 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVL 339 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEE
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeE
Confidence 111223789999998887654 2 3456699999877665554433 5889999999984 56666 59999
Q ss_pred EEEECCCCceeeeeccCCcCcEEEEEEcC
Q 012994 314 RIFQYNGGRSREIYHTKRMQRVFCVKFSC 342 (452)
Q Consensus 314 ~iwd~~~~~~~~~~~~~~~~~v~~~~~s~ 342 (452)
.++|+.+++.+..+..+ .....+++.+
T Consensus 340 sVID~~t~kvv~~I~vg--~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELD--KGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCC--SCCCEEECCC
T ss_pred EEEECCCCcEEEEEECC--CCCCEEEeec
Confidence 99999999988887655 3455565543
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.37 E-value=8.8e-10 Score=97.22 Aligned_cols=225 Identities=10% Similarity=0.023 Sum_probs=143.8
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
.-..+..|+|++..++++...++.|..||..+++.. .+. ....+.+++|+++++++++. .+ .|.+||..++.....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 345788999986467778778899999999877543 333 35689999999999877654 44 499999877653211
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcE
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNV 218 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 218 (452)
..... . .....+..+.++++|.++++.. +.|..++ +++. ..+.........++|+|++..+
T Consensus 125 ~~~~~--~------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~l 193 (326)
T 2ghs_A 125 AELES--D------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTG 193 (326)
T ss_dssp ECSST--T------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEE
T ss_pred eeCCC--C------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEE
Confidence 10000 0 0012467789999999877653 2455555 3432 2232223456789999998555
Q ss_pred EEEEecCCeEEEEEcc--CC-CCc--eEEE-e---ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc
Q 012994 219 LATTASDRSITLYDLR--MS-SPA--RKVI-M---RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 219 l~~~~~dg~i~i~d~~--~~-~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
+++.+.++.|.+||+. ++ ... ..+. . ......+++.+++. ++++...++.|..||.. .. .......+.
T Consensus 194 yv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~-g~-~~~~i~~~~ 270 (326)
T 2ghs_A 194 YFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTD-GN-HIARYEVPG 270 (326)
T ss_dssp EEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTT-CC-EEEEEECSC
T ss_pred EEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCC-CC-EEEEEECCC
Confidence 5666667899999986 44 321 1221 1 12345677887775 45555566789999984 22 223333455
Q ss_pred cceEEEEEc-CCCCEEEEEeC
Q 012994 290 SAVMDIDYS-PTGREFVTGSY 309 (452)
Q Consensus 290 ~~v~~~~~s-~~g~~l~s~~~ 309 (452)
..+++++|+ |+++.|+.++.
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEB
T ss_pred CCcEEEEEecCCCCEEEEEec
Confidence 579999998 88877655543
No 220
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.36 E-value=9.5e-10 Score=97.83 Aligned_cols=223 Identities=11% Similarity=0.106 Sum_probs=148.7
Q ss_pred CCCcceEEEeeCCCcEEEEeCCCC----ceEEEee-------cCCCCeeEEEEccCCCeEEEEeCC------CcEEEEeC
Q 012994 76 PNYLKGFFSGSMDGDIRLWDIANR----RTVCQYS-------GHQGAVRGLTVSTDGRILVSCGTD------CTVKLWNV 138 (452)
Q Consensus 76 ~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~~~d------g~v~iwd~ 138 (452)
++...++++|..++.|.++|+.+. +....+. .....-..+..+|+| .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 777455667788899999998755 5555552 111245667888999 77776555 78999999
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe---------------------CCeEEEEeCCCCCcce
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA---------------------GAQVDIWNHNRSQPIN 197 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~i~i~d~~~~~~~~ 197 (452)
.+.+.+......... ..--..+.|+|+++.+++. +..|.+||+.+++.+.
T Consensus 172 ~T~~v~~~~~~~~~~---------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 172 YSFEPLGKWEIDRGD---------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp TTCCEEEECCSBCTT---------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CCCeEEEEEccCCCC---------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 888665544322110 1112346779999988888 3579999999988887
Q ss_pred ecccCC--CceEEEEE--CCCCCcEEEEEe-----cCCeEEEEEccCCCCc--eEEEe-------------------ecc
Q 012994 198 SFQWGT--DTVISVRF--NPAEPNVLATTA-----SDRSITLYDLRMSSPA--RKVIM-------------------RTK 247 (452)
Q Consensus 198 ~~~~~~--~~i~~~~~--~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~--~~~~~-------------------~~~ 247 (452)
.+.... .....+.| +|++...++++. .+++|.+|....+... ..+.. ...
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 776532 23445555 999865555565 6778887766542211 11100 134
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCccccc---eeeeCcc-------------cceEEEEEcCCCCEEEEEe
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK---CVHMGHE-------------SAVMDIDYSPTGREFVTGS 308 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~-------------~~v~~~~~s~~g~~l~s~~ 308 (452)
...+.++++++.++++.-..+.|.+||+....... .+..+-. .....++++|||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 56889999999999999999999999986432222 2222200 1357899999999998887
No 221
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.35 E-value=8.5e-10 Score=99.61 Aligned_cols=267 Identities=9% Similarity=0.025 Sum_probs=166.0
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecC---------CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH---------QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---------~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
..+++++.++.|..+|..+++.+..+... ...+.+.. ..++..++.++.++.|..+|..+++........
T Consensus 54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC
Confidence 56888888999999999999988776542 12232221 124567888889999999999888654322211
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcceecccCCCce-----EEEEECCCCCcEEEEEec
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTV-----ISVRFNPAEPNVLATTAS 224 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~l~~~~~ 224 (452)
..+.......++.+++.. ++.+..+|..+++.+.......... ...... + ..++++..
T Consensus 133 -------------~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~ 196 (376)
T 3q7m_A 133 -------------GEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGD 196 (376)
T ss_dssp -------------SCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCT
T ss_pred -------------CceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcC
Confidence 111111111244444433 4679999999998877665432211 111222 2 45777888
Q ss_pred CCeEEEEEccCCCCceEEEeecccce--------EEEcc-CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEE
Q 012994 225 DRSITLYDLRMSSPARKVIMRTKSNS--------ISWNP-MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDI 295 (452)
Q Consensus 225 dg~i~i~d~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~ 295 (452)
+|.+..+|..+++............. +...| .....+.+++.++.++.+|..+........ ......+
T Consensus 197 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~~~~~~~ 273 (376)
T 3q7m_A 197 NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---LGSVNDF 273 (376)
T ss_dssp TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---CCCEEEE
T ss_pred CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---CCCCCCc
Confidence 99999999999888776654322100 00111 012346666778899999988765443322 1223334
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 296 DYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 296 ~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.. ++..|+.++.+|.|..+|..+++............+..... .+..|+.++.+|.|.++|..+|+.+...
T Consensus 274 ~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 274 IV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 43 45678888889999999999998876654222122333333 2457888899999999999999887544
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=1.6e-09 Score=96.47 Aligned_cols=222 Identities=12% Similarity=0.129 Sum_probs=144.0
Q ss_pred cCCCeEEE-EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE--------ecCCeeeeeecCCCCeEEEeC-------
Q 012994 119 TDGRILVS-CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV--------WKNSFWAVDHQWEGDLFATAG------- 182 (452)
Q Consensus 119 ~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------- 182 (452)
+++++|+. +-.+++|.++|+.+.... ........ .......+...|+| ++++..
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~---------p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~ 162 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPRE---------PKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEG 162 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTS---------CEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCS
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCC---------ceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCC
Confidence 77777665 556789999998644210 11111110 00123456678899 665543
Q ss_pred -CeEEEEeCCCCCcceecccCC---CceEEEEECCCCCcEEEEEe-------------------cCCeEEEEEccCCCCc
Q 012994 183 -AQVDIWNHNRSQPINSFQWGT---DTVISVRFNPAEPNVLATTA-------------------SDRSITLYDLRMSSPA 239 (452)
Q Consensus 183 -~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~ 239 (452)
+.+.++|..+.+.+..+.... ..-..+.|+|++ +.+++.. .+.+|.+||+.+.+..
T Consensus 163 ~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 163 PGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPN-EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp CCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTT-TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCeEEEEEccCCCCccccceEEECCCC-CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 359999999999988886322 224468889988 5666664 3689999999988777
Q ss_pred eEEEeec---ccceEEE--ccCCCceEEeec-----CCCeEEEEeCCCcc--cccee-eeC----------------ccc
Q 012994 240 RKVIMRT---KSNSISW--NPMEPMNFTAAN-----EDCNCYSYDSRKLD--EAKCV-HMG----------------HES 290 (452)
Q Consensus 240 ~~~~~~~---~~~~~~~--~~~~~~~~~~~~-----~~~~i~~~d~~~~~--~~~~~-~~~----------------~~~ 290 (452)
..+.... ....+.| +|++...++++. .++.|.+|...... ....+ ... -..
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 7776642 2334444 999999888888 88888765543210 00000 000 023
Q ss_pred ceEEEEEcCCCCEEEEEeC-CCeEEEEECCCC---ceeeeeccCCc-------------CcEEEEEEcCCCCEEEEee
Q 012994 291 AVMDIDYSPTGREFVTGSY-DRTIRIFQYNGG---RSREIYHTKRM-------------QRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~-dg~i~iwd~~~~---~~~~~~~~~~~-------------~~v~~~~~s~~~~~l~s~~ 351 (452)
....+.+||||++|.++.. .+.|.+||+... +.......+.. +....++++|||++|+++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 5788999999999887765 688999998633 33333333210 1367899999999999887
No 223
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.33 E-value=1.6e-10 Score=113.97 Aligned_cols=139 Identities=12% Similarity=0.049 Sum_probs=89.9
Q ss_pred eEEEEEccCCCCceEEEeec-----ccceEEEccCCCceEEeecC----CCeEEEEeCCCcccc-ceeeeCcccceEEEE
Q 012994 227 SITLYDLRMSSPARKVIMRT-----KSNSISWNPMEPMNFTAANE----DCNCYSYDSRKLDEA-KCVHMGHESAVMDID 296 (452)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~i~~~d~~~~~~~-~~~~~~~~~~v~~~~ 296 (452)
.|.+|++.+......+.... ....+.|+|++..++++... ...++++|+.+.... ...+..+...+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~- 322 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF- 322 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-
Confidence 48889887665433333221 24678899999987776653 458999998765222 23333444444444
Q ss_pred EcCCCCEEEEEeC----CCeEEEEECCCC--ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc-cccccc
Q 012994 297 YSPTGREFVTGSY----DRTIRIFQYNGG--RSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK-ASEQLG 368 (452)
Q Consensus 297 ~s~~g~~l~s~~~----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~ 368 (452)
++|+|+.|+..+. ++.|.+||+.++ .....+ .++...+..++|+ ++.++++...|+..+||.+. +++...
T Consensus 323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~-~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVV-PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEE-CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEe-cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 3489998887765 345999999875 333333 3343567788887 66788888899988888665 344433
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.31 E-value=2.5e-10 Score=105.25 Aligned_cols=271 Identities=12% Similarity=0.133 Sum_probs=180.0
Q ss_pred eEEEeeCCCcEEEEeCCCCceEEEee---------------------c------------CC------CCeeEEEEcc--
Q 012994 81 GFFSGSMDGDIRLWDIANRRTVCQYS---------------------G------------HQ------GAVRGLTVST-- 119 (452)
Q Consensus 81 ~l~tg~~dg~i~iwd~~~~~~~~~~~---------------------~------------h~------~~v~~l~~~~-- 119 (452)
.|.+|+..|.|+|+-+.+++.+..+. . +. +.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 47789999999999999887766542 0 11 2233455555
Q ss_pred ---CCCeEEEEeC-CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeee-c-CCCCeEEEeC-----------
Q 012994 120 ---DGRILVSCGT-DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDH-Q-WEGDLFATAG----------- 182 (452)
Q Consensus 120 ---~~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~----------- 182 (452)
||++|+.+.. ++.|.+.|+.+.++..... .........+++ + |++.++.+++
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-----------ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILE-----------IPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-----------CSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEe-----------CCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 7888877765 4569999998875432111 111223445555 3 6777766662
Q ss_pred ---------CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC----------------------------
Q 012994 183 ---------AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD---------------------------- 225 (452)
Q Consensus 183 ---------~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------------------------- 225 (452)
+.+.++|..+.+....+.... ....++++|++. ++++.+.+
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk-~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCC-EEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 258999999988877776533 456688999884 44444433
Q ss_pred ----------CeEEEEEccC--CCC-ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc----------c
Q 012994 226 ----------RSITLYDLRM--SSP-ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA----------K 282 (452)
Q Consensus 226 ----------g~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----------~ 282 (452)
+.|.+.|.++ +.. +..+........+.++|++.++++++..+..+.++|..+.... .
T Consensus 244 ~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 244 AIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred eccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 2477778877 445 5677778888999999999999999999999999999865310 1
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CceeeeeccCCcCc--E---EEEEEcCCCCEE
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG----------GRSREIYHTKRMQR--V---FCVKFSCDASYV 347 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~--v---~~~~~s~~~~~l 347 (452)
.....-......++|+|+|...++.-.|+.|.+||+.. ...+..+..+. .+ . .++.++|||++|
T Consensus 324 ~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y-qpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEEEEETTTTSTTCCSSEE
T ss_pred EEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccc-ccccceeccceEeCCCCCEE
Confidence 11112234578899999995455666799999999976 33333333321 11 1 123558999999
Q ss_pred EEeeC---CCc----------EEEeeccccc
Q 012994 348 ISGSD---DTN----------LRLWKAKASE 365 (452)
Q Consensus 348 ~s~~~---dg~----------i~iw~~~~~~ 365 (452)
++... |.. -.++|+..++
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 98653 432 1888995544
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=2.8e-10 Score=110.20 Aligned_cols=281 Identities=11% Similarity=0.046 Sum_probs=178.6
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecC-C----CCeeEEEEccCCCeEEEEeC------CCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH-Q----GAVRGLTVSTDGRILVSCGT------DCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~----~~v~~l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 148 (452)
..+++++.|+.|..+|..+|+.+..+..+ . ..+.+--.. .+..++.++. +|.|..||..+++.+....
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 57888899999999999999998888754 2 122211111 2345555543 6899999999998764433
Q ss_pred CCCCCC-CCe-------------------eEEEecCCeeeeeecCCCCeEEEeCC---------------------eEEE
Q 012994 149 STDNSS-EPL-------------------AVYVWKNSFWAVDHQWEGDLFATAGA---------------------QVDI 187 (452)
Q Consensus 149 ~~~~~~-~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~i 187 (452)
...... .+. ...........+.+++++.+++.+.+ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 221110 000 00011122235667777776665542 3899
Q ss_pred EeCCCCCcceecccCC---------CceEEEEECCCCC--cEEEEEecCCeEEEEEccCCCCceEEEeeccc--------
Q 012994 188 WNHNRSQPINSFQWGT---------DTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRTKS-------- 248 (452)
Q Consensus 188 ~d~~~~~~~~~~~~~~---------~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------- 248 (452)
+|..+++.+..++... .....+....++. ..++.++.+|.+.++|..+++.+.........
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~ 367 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH 367 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCC
Confidence 9999999887765421 1122222222442 57889999999999999999887665532100
Q ss_pred ----------------------------ceEEEccCCCceEEeec-----------------------------------
Q 012994 249 ----------------------------NSISWNPMEPMNFTAAN----------------------------------- 265 (452)
Q Consensus 249 ----------------------------~~~~~~~~~~~~~~~~~----------------------------------- 265 (452)
..++++|+...+++...
T Consensus 368 g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 447 (677)
T 1kb0_A 368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (677)
T ss_dssp SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccc
Confidence 14567777776655432
Q ss_pred -------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 266 -------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 266 -------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
..+.+..||..+.+..-... +..++....++.++..++.++.||.+++||..+++.+..+.........-+
T Consensus 448 ~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ 525 (677)
T 1kb0_A 448 AEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS 525 (677)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred cccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCE
Confidence 12678999998776554443 223344555667788899999999999999999999988866653334456
Q ss_pred EEcCCCCEEE-EeeC----------------CCcEEEeeccc
Q 012994 339 KFSCDASYVI-SGSD----------------DTNLRLWKAKA 363 (452)
Q Consensus 339 ~~s~~~~~l~-s~~~----------------dg~i~iw~~~~ 363 (452)
.|..+|+.++ +.+. .+.+.+|.+..
T Consensus 526 ~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 526 TYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 6777887544 3222 36788888763
No 226
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.29 E-value=6e-11 Score=105.30 Aligned_cols=174 Identities=7% Similarity=0.056 Sum_probs=122.3
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCC-----------CceEEEeecccceEEEccCCCceEEeecCCCeEEE
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSS-----------PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYS 272 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (452)
..++.+++++.. .++++|+.++ +.+|++.... ......... +..++| ++.. ++++ .++.+.+
T Consensus 38 ~~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~-L~v~-~~~~l~v 110 (388)
T 1xip_A 38 ASLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQ-VLVS-TRNALYS 110 (388)
T ss_dssp SCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTE-EEEE-ESSEEEE
T ss_pred ccccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCE-EEEE-cCCcEEE
Confidence 368889999987 6788888774 6669875433 223445556 888899 5554 4445 7799999
Q ss_pred EeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeC
Q 012994 273 YDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 273 ~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
||++...... ....|...+.++.+.+. .+++++.||.|.+||+.++.... ....|++++|||+| ++.|..
T Consensus 111 ~dv~sl~~~~-~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 111 LDLEELSEFR-TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EESSSTTCEE-EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEET
T ss_pred EEchhhhccC-ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEc
Confidence 9998876433 34456677888777654 38889999999999999877643 22579999999999 677899
Q ss_pred CCcEEEeecccccc--cccCChhhhhhhHHHHHHHHhhccCccccccccCCC
Q 012994 353 DTNLRLWKAKASEQ--LGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRH 402 (452)
Q Consensus 353 dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (452)
||.+++|+...++. ..++..... +.+...|...+.+++|.++
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~--------~~~~~~~~~~V~sI~wl~~ 224 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSE--------LEELPVEEYSPLSVTILSP 224 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHH--------HHTSCTTTSEEEEEEESSS
T ss_pred CCcEEEEcCCCccccccceecCCcc--------cccccCCCeeEEEEEEecC
Confidence 99999998877664 444432211 1111134566777777764
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.28 E-value=1.3e-12 Score=117.28 Aligned_cols=229 Identities=8% Similarity=-0.009 Sum_probs=125.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|..||..+++......
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~----------- 76 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP----------- 76 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-----------
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-----------
Confidence 7899999999999999999999988875 566666666777788888899999999987764321110
Q ss_pred EEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc
Q 012994 160 YVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA 239 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 239 (452)
....... ...++ +. .+ ..+++++.|+.|..||..+++..
T Consensus 77 ------------------------------~~~~~~~-----~~sp~----~~-~~-~~v~~g~~dg~v~a~D~~tG~~~ 115 (369)
T 2hz6_A 77 ------------------------------FTIPELV-----QASPC----RS-SD-GILYMGKKQDIWYVIDLLTGEKQ 115 (369)
T ss_dssp ------------------------------CCHHHHH-----TTCSC----C-------CCCCEEEEEEEEECCC-----
T ss_pred ------------------------------ccCcccc-----ccCce----Ee-cC-CEEEEEeCCCEEEEEECCCCcEE
Confidence 0000000 01111 01 12 35677888999999999999887
Q ss_pred eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCC---CEEEEEeCCCeEEEE
Q 012994 240 RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTG---REFVTGSYDRTIRIF 316 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~s~~~dg~i~iw 316 (452)
..+.... ...++|.+ ..+++++.++.++.||.++.......... .....+++++. ..+++++.||.|+.|
T Consensus 116 w~~~~~~---~~~~~p~~-~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~ 188 (369)
T 2hz6_A 116 QTLSSAF---ADSLSPST-SLLYLGRTEYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTV 188 (369)
T ss_dssp ---------------------EEEEEEEEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEE
T ss_pred EEecCCC---cccccccC-CEEEEEecCCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEE
Confidence 7665443 23345544 45667778899999999876654433211 11223344432 567778899999999
Q ss_pred ECCCCceeeeeccCCcCcEE-EEEEcCCCCEEEE--eeCCCcEEEeeccccc----ccccCC
Q 012994 317 QYNGGRSREIYHTKRMQRVF-CVKFSCDASYVIS--GSDDTNLRLWKAKASE----QLGVLH 371 (452)
Q Consensus 317 d~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~----~~~~~~ 371 (452)
|..+|+.+...... .++. ...++++|...+. ...++.++.+|..+|+ .+-.+.
T Consensus 189 d~~tG~~~W~~~~~--~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 189 DSESGDVLWIQNYA--SPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp CTTTCCEEEEEECS--SCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred ECCCCcEEEEecCC--CceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeec
Confidence 99999987766533 3443 3455566643211 0114567778887777 554443
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.9e-09 Score=97.92 Aligned_cols=197 Identities=7% Similarity=0.049 Sum_probs=131.1
Q ss_pred CeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCce
Q 012994 165 SFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPAR 240 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~ 240 (452)
....+++++++.++++.. +.|++||..++........ ..... ++|++++ +.|+++..++ .|.+||........
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g-~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDK-QRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTS-SEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCC-CcEEEEecCCCceEEEEEcCCCceeE
Confidence 345677888888777765 4688888877665544443 23334 8999988 5666666655 79999987665543
Q ss_pred EE----E-eecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee---eeCcccce--EEEEEcCC-CCEEEEEeC
Q 012994 241 KV----I-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV---HMGHESAV--MDIDYSPT-GREFVTGSY 309 (452)
Q Consensus 241 ~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~v--~~~~~s~~-g~~l~s~~~ 309 (452)
.+ . .......++++|++..+++ +..++.|+.||.......... ..++...- ..++|+|+ +.++++-..
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 33 1 2345678899997666666 556889999998765422110 11222222 38999995 666666667
Q ss_pred CCeEEEEECCCCceeeeeccC-------------CcCcEEEEEEcCCCCEEEEee-CCCcEEEeecccccc
Q 012994 310 DRTIRIFQYNGGRSREIYHTK-------------RMQRVFCVKFSCDASYVISGS-DDTNLRLWKAKASEQ 366 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~ 366 (452)
++.|+.|+.... ........ .......++++++|+++++-+ .++.|+.|++.+++.
T Consensus 288 ~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 288 LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 889999998754 22111110 124588999999999888877 889999999877764
No 229
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.25 E-value=3.5e-09 Score=92.94 Aligned_cols=195 Identities=6% Similarity=0.055 Sum_probs=133.6
Q ss_pred ccccEEEEEeCCC-CcceEEEeeCCCcEEEEeCCCCceEEE-eec----CCCCeeEEEEccCCCeEEEEeCC--------
Q 012994 65 HRDGISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQ-YSG----HQGAVRGLTVSTDGRILVSCGTD-------- 130 (452)
Q Consensus 65 h~~~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~----h~~~v~~l~~~~~~~~l~s~~~d-------- 130 (452)
+...+.+++++++ + +++++.. .+.|.+||.. ++.... ... ....+.++++.++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~ 145 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc
Confidence 5678999999999 6 5554443 4579999987 665432 221 12358899999999877776554
Q ss_pred -------CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeec----CCCCeE-EEeC--CeEEEEeCC-CCC-
Q 012994 131 -------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQ----WEGDLF-ATAG--AQVDIWNHN-RSQ- 194 (452)
Q Consensus 131 -------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~--~~i~i~d~~-~~~- 194 (452)
+.|..||.. +. .............++++ +++..+ ++.. +.|.+|+.. +++
T Consensus 146 ~~~~~~~~~l~~~~~~-g~-------------~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 146 RSMQEKFGSIYCFTTD-GQ-------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI 211 (314)
T ss_dssp BTTSSSCEEEEEECTT-SC-------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE
T ss_pred ccccCCCCeEEEECCC-CC-------------EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc
Confidence 456666653 21 11122223345678888 998644 4432 579999976 333
Q ss_pred ----cceecccCC-CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCCC
Q 012994 195 ----PINSFQWGT-DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 195 ----~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
....+..+. ..+..+++.+++ +++++...++.|.+||..+++....+... ..+..+++++++..++++...++
T Consensus 212 ~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~ 290 (314)
T 1pjx_A 212 ENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENN 290 (314)
T ss_dssp EEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTT
T ss_pred ccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCC
Confidence 222333333 567889999988 77777778899999999867766666554 55678899999887788888888
Q ss_pred eEEEEeCCC
Q 012994 269 NCYSYDSRK 277 (452)
Q Consensus 269 ~i~~~d~~~ 277 (452)
.+..|+...
T Consensus 291 ~l~~~~~~~ 299 (314)
T 1pjx_A 291 AVWKFEWQR 299 (314)
T ss_dssp EEEEEECSS
T ss_pred eEEEEeCCC
Confidence 999998764
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.23 E-value=1.4e-09 Score=105.63 Aligned_cols=266 Identities=13% Similarity=0.071 Sum_probs=163.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecC--CCCeeEEEEcc---CCCeEEEEe------CCCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH--QGAVRGLTVST---DGRILVSCG------TDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~---~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~ 148 (452)
..+++++.|+.|..+|..+|+.+..+... ......+..+| ++ .++.++ .+|.|..||..+++......
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 56888889999999999999998877642 11111122222 44 444443 37899999999998764432
Q ss_pred CCC-CCCCCee---E---------------EEecCCeeeeeecCCCCeEEEeCC---------------------eEEEE
Q 012994 149 STD-NSSEPLA---V---------------YVWKNSFWAVDHQWEGDLFATAGA---------------------QVDIW 188 (452)
Q Consensus 149 ~~~-~~~~~~~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~i~ 188 (452)
... ....... . .........+.++++..+++.+.+ .|..+
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 211 0000000 0 011112235677777776666543 28999
Q ss_pred eCCCCCcceecccCC---------CceEEEEECCCC--CcEEEEEecCCeEEEEEccCCCCceEEEeec-----------
Q 012994 189 NHNRSQPINSFQWGT---------DTVISVRFNPAE--PNVLATTASDRSITLYDLRMSSPARKVIMRT----------- 246 (452)
Q Consensus 189 d~~~~~~~~~~~~~~---------~~i~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----------- 246 (452)
|..+++.+..++... ..+.......++ ...++.++.+|.++++|..+++.+.......
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 999999887765421 112112221233 1378889999999999999988764332211
Q ss_pred -----------------------------ccceEEEccCCCceEEeecC-------------------------------
Q 012994 247 -----------------------------KSNSISWNPMEPMNFTAANE------------------------------- 266 (452)
Q Consensus 247 -----------------------------~~~~~~~~~~~~~~~~~~~~------------------------------- 266 (452)
.-..++++|+...+++....
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 00125677776655543211
Q ss_pred -------------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcC
Q 012994 267 -------------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQ 333 (452)
Q Consensus 267 -------------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 333 (452)
++.+..||+.+.+..-....+ .++..-.++..+.+++.|+.||.|+.||.++|+.+..+......
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~ 518 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV 518 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCc
Confidence 377899999887655443322 23333355667889999999999999999999999887665433
Q ss_pred cEEEEEEcCCCCEEE
Q 012994 334 RVFCVKFSCDASYVI 348 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~ 348 (452)
...-+.|..+|+..+
T Consensus 519 ~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 519 MAAPVTYSVDGEQYV 533 (689)
T ss_dssp CSCCEEEEETTEEEE
T ss_pred ccCceEEEECCEEEE
Confidence 334467778887543
No 231
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.22 E-value=2.8e-08 Score=84.86 Aligned_cols=248 Identities=9% Similarity=0.073 Sum_probs=154.0
Q ss_pred ceEEEeeCCCcEEEEeCCCCce-----EEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRT-----VCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNS 153 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~ 153 (452)
.+|+.+.. +.|+.+++..... ...+......+.+++|++++..|+.+ ..++.|..+++.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~---------- 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP---------- 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC----------
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc----------
Confidence 34554443 4788888865432 11222223457899999966655554 4568999999865421
Q ss_pred CCCeeEEEe-cCCeeeeeecCCCC-eEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec--CCe
Q 012994 154 SEPLAVYVW-KNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS--DRS 227 (452)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--dg~ 227 (452)
...... ......+++++++. ++++.. +.|.+++...................++++|+++.++++... .+.
T Consensus 71 ---~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~ 147 (267)
T 1npe_A 71 ---TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (267)
T ss_dssp ---EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred ---EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence 111111 13567888888655 444443 469999887543322222223567899999976566555543 468
Q ss_pred EEEEEccCCCCceEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEE
Q 012994 228 ITLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 228 i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
|..+++.... ...+.. ......+++++++..++++....+.|..+|....... ....+ ......++.. .+.+++
T Consensus 148 I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-~~~~~-~~~P~gi~~d-~~~lyv 223 (267)
T 1npe_A 148 IETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-KVLEG-LQYPFAVTSY-GKNLYY 223 (267)
T ss_dssp EEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-EEEEC-CCSEEEEEEE-TTEEEE
T ss_pred EEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceE-EEecC-CCCceEEEEe-CCEEEE
Confidence 8888876433 222221 2346789999999999999999999999998754322 22222 2234566654 344444
Q ss_pred EEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
+....+.|..+|..+++....+..+.......+++.|++.
T Consensus 224 a~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 224 TDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 4445689999999999887777554333477888888765
No 232
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=7.6e-09 Score=93.35 Aligned_cols=262 Identities=11% Similarity=0.002 Sum_probs=154.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
..++.++.++.|..+|..+++.+................ +..++.++.++.|..+|..+++............ .
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~----~ 177 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL----S 177 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC--------
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce----e
Confidence 567888889999999999999887776443222222222 3478888889999999998886543322111000 0
Q ss_pred EEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcceecccCCCc-------eEEEEECC--CCCcEEEEEecCCeEE
Q 012994 160 YVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDT-------VISVRFNP--AEPNVLATTASDRSIT 229 (452)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~-------i~~~~~~~--~~~~~l~~~~~dg~i~ 229 (452)
. ......... ++.+++.. ++.+..+|..+++.+......... +..+...| .+ ..++.++.++.+.
T Consensus 178 ~---~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~v~~~~~~g~l~ 252 (376)
T 3q7m_A 178 L---RGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN-GVVFALAYNGNLT 252 (376)
T ss_dssp ----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET-TEEEEECTTSCEE
T ss_pred e---cCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC-CEEEEEecCcEEE
Confidence 0 000111111 33333333 367999999998887665432110 00000111 12 4577778899999
Q ss_pred EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC
Q 012994 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY 309 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~ 309 (452)
.+|..+++......... ...... .+. .+.+++.++.++.+|..+..............+..... .+..|+.++.
T Consensus 253 ~~d~~tG~~~w~~~~~~-~~~~~~--~~~-~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 253 ALDLRSGQIMWKRELGS-VNDFIV--DGN-RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EEETTTCCEEEEECCCC-EEEEEE--ETT-EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred EEECCCCcEEeeccCCC-CCCceE--ECC-EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 99999888766554322 122222 233 45666678899999988765443322111122222222 3467888889
Q ss_pred CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 310 DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 310 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
+|.|.++|..+++.+................ .+..|+.++.+|.|+.|+
T Consensus 327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 9999999999999877665422111111222 245677889999999986
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=8.2e-09 Score=99.92 Aligned_cols=279 Identities=12% Similarity=0.076 Sum_probs=173.3
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCC----------e-eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGA----------V-RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~----------v-~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 148 (452)
..+++++.++.|.-+|..+|+.+..+...... + ..+.+ .+..++.++.|+.|..+|..+++......
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 56777888999999999999998887543211 0 11222 34578888899999999999987654432
Q ss_pred CCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCC------------------
Q 012994 149 STDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGT------------------ 203 (452)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~------------------ 203 (452)
...... ...+...-.-.++.+++.. ++.+..+|..+++.+..+....
T Consensus 145 ~~~~~~--------~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 216 (668)
T 1kv9_A 145 TTDPAK--------PYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKT 216 (668)
T ss_dssp CSCTTS--------SCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred cCCCCC--------cceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccccccccccc
Confidence 211000 0000000000134344332 2569999999998876654210
Q ss_pred -------------CceEEEEECCCCCcEEEEEecCC-------------------eEEEEEccCCCCceEEEeec-----
Q 012994 204 -------------DTVISVRFNPAEPNVLATTASDR-------------------SITLYDLRMSSPARKVIMRT----- 246 (452)
Q Consensus 204 -------------~~i~~~~~~~~~~~~l~~~~~dg-------------------~i~i~d~~~~~~~~~~~~~~----- 246 (452)
.....+++.|.. .+++.+..++ .|..+|..+++....+....
T Consensus 217 ~~g~~~w~~~~gg~~w~~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 217 WQGDQYWKLGGGGTVWDSMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp CCSSCHHHHCEECCCCSCEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred CCccceeeeCCCCccccceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 011235777766 5677777665 49999999999888776531
Q ss_pred -----ccceEEEccCCC--ceEEeecCCCeEEEEeCCCccccceeeeCc-----------ccc-----------------
Q 012994 247 -----KSNSISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGH-----------ESA----------------- 291 (452)
Q Consensus 247 -----~~~~~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-----------~~~----------------- 291 (452)
.........++. ..++.++.+|.++.+|..+.+......... ..+
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 111112222443 357888899999999988765442111000 000
Q ss_pred -------eEEEEEcCCCCEEEEE------------------------------------eCCCeEEEEECCCCceeeeec
Q 012994 292 -------VMDIDYSPTGREFVTG------------------------------------SYDRTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 292 -------v~~~~~s~~g~~l~s~------------------------------------~~dg~i~iwd~~~~~~~~~~~ 328 (452)
-..++++|+...++.. ..+|.|..||+.+++.+....
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 0126777776665531 134889999999999877664
Q ss_pred cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 329 TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 329 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.. .+.....+...+.+++.++.||.++.||..+|+.+..+.
T Consensus 456 ~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 456 YP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp ES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 43 233333445567889999999999999999999886653
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=5.3e-09 Score=92.45 Aligned_cols=274 Identities=9% Similarity=0.002 Sum_probs=164.4
Q ss_pred cccccccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 56 RPFIGALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 56 ~~~~~~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
+..+..+..+...+.++...+++ . +..++.+ |..+|. +++.+..+...........+. +..|..++.++.|..
T Consensus 49 g~~~~~~~~~~~~~~~~~~~~~g-~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~ 121 (330)
T 3hxj_A 49 GSVKWFFKSGEIIECRPSIGKDG-T-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYA 121 (330)
T ss_dssp SCEEESSCGGGEEEECCEETTTT-E-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEE
T ss_pred CcEEEEEecCCCcccceEEecCC-c-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEE
Confidence 33333444445566788888775 4 5555555 888886 666554443333333333333 456777888899999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA 214 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~ 214 (452)
+|.. +..... .......+.++...+++.+++... +.+..+|.. ++....+......+.++...++
T Consensus 122 ~d~~-g~~~~~------------~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~ 187 (330)
T 3hxj_A 122 INTD-GTEKWR------------FKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKD 187 (330)
T ss_dssp ECTT-SCEEEE------------EECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTT
T ss_pred EcCC-CCEEEE------------EcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCC
Confidence 9986 532211 111122344556666787777665 789999998 7776666655556677777666
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceE
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVM 293 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~ 293 (452)
+ .+ ..++ +.|..+| .++......... ..+.++...+++ .+.+++.++.+..+|... .... ........+.
T Consensus 188 g-~l-~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~~g-~~~~-~~~~~~~~~~ 258 (330)
T 3hxj_A 188 G-TI-YFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINPDG-TEKW-RFKTGKRIES 258 (330)
T ss_dssp C-CE-EEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECTTS-CEEE-EEECSSCCCS
T ss_pred C-EE-EEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECCCC-CEeE-EeeCCCCccc
Confidence 6 44 4444 7899999 555554444332 234455565554 355566677888887532 2222 2222223344
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.+.+.++| .|..++.+|.|..+|. +++....+... ...+.++...++|. |..++.+|.+++...+.
T Consensus 259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~-~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG-SWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS-SCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC-CccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 45566565 5666778888999996 56665555433 24567777877887 55588899999877653
No 235
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.14 E-value=1.4e-08 Score=88.56 Aligned_cols=207 Identities=12% Similarity=0.079 Sum_probs=126.3
Q ss_pred eEEEeecCCCCeeEEEEccCCC-eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEE
Q 012994 101 TVCQYSGHQGAVRGLTVSTDGR-ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFA 179 (452)
Q Consensus 101 ~~~~~~~h~~~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (452)
.+..+...........|+|+++ ++++...++.|..|+.. +.
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~------------------------------------- 77 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT------------------------------------- 77 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------------------------------------
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------------------------------------
Confidence 3444555556778899999988 56666678889999862 21
Q ss_pred EeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe------ecccceEEE
Q 012994 180 TAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM------RTKSNSISW 253 (452)
Q Consensus 180 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~ 253 (452)
...+......+..+++.+++ +++++...++.|.+||.. +. ...+.. ...++.+.+
T Consensus 78 ----------------~~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~-g~-~~~~~~~~~~~~~~~~~~i~~ 138 (305)
T 3dr2_A 78 ----------------VDVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD-GQ-AHLLVGRYAGKRLNSPNDLIV 138 (305)
T ss_dssp ----------------EEEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT-SC-EEEEECEETTEECSCCCCEEE
T ss_pred ----------------EEEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC-CC-EEEEEeccCCCccCCCCCEEE
Confidence 11111223456778888877 555555555778888865 33 222211 123456888
Q ss_pred ccCCCceEEe---ecC-------------CCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC------C
Q 012994 254 NPMEPMNFTA---ANE-------------DCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD------R 311 (452)
Q Consensus 254 ~~~~~~~~~~---~~~-------------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d------g 311 (452)
.+++...+.- +.. .+.|+.+|..+..... .. .......++|+|||+.|+.+... +
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~-~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~ 215 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR-MA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSV 215 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE-EE--EESSEEEEEECTTSSEEEEEECCC---CCC
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE-Ee--cCCCCcceEEcCCCCEEEEEecCCcCCCCC
Confidence 8887644321 221 3568888875433222 11 33456789999999988777665 7
Q ss_pred eEEEEECCCCcee--eeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 312 TIRIFQYNGGRSR--EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 312 ~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.|.+|++..+... ..+..........++++++|++.+ ++.+ .|.+|+. .++.+..+
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~ 273 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHI 273 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEE
T ss_pred EEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEE
Confidence 8999998765411 111111224456789999999554 4445 4999998 46655444
No 236
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.13 E-value=9.2e-08 Score=84.13 Aligned_cols=242 Identities=12% Similarity=0.033 Sum_probs=145.8
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec--------------------CCCCeeEEEEcc-CCCeEE
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG--------------------HQGAVRGLTVST-DGRILV 125 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~--------------------h~~~v~~l~~~~-~~~~l~ 125 (452)
....++++++++ ++++++..++.|..||..+++.. .+.. ....+.++++.+ ++ .|+
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLY 95 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEE
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC-cEE
Confidence 356788899997 87888888999999998765432 2221 013578899997 55 455
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCc
Q 012994 126 SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDT 205 (452)
Q Consensus 126 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~ 205 (452)
.+...+.|..+|..++... ...... .+ .....
T Consensus 96 v~d~~~~i~~~d~~~g~~~-------------~~~~~~----------------------------~~-------~~~~~ 127 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHAT-------------QLATSV----------------------------DG-------VPFKW 127 (322)
T ss_dssp EEETTTEEEEECTTCEECE-------------EEESEE----------------------------TT-------EECSC
T ss_pred EEECCCCEEEEeCCCCEEE-------------EecccC----------------------------CC-------Ccccc
Confidence 5555555777876543210 000000 00 00122
Q ss_pred eEEEEECC-CCCcEEEEEe-----------------cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC
Q 012994 206 VISVRFNP-AEPNVLATTA-----------------SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 206 i~~~~~~~-~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
...+++.+ ++ +++++.. .+|.|..||..++..............++++|++..++++....
T Consensus 128 p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~ 206 (322)
T 2fp8_A 128 LYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS 206 (322)
T ss_dssp EEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG
T ss_pred cceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC
Confidence 44555555 44 3433322 23667778776554332222334567899999998888888888
Q ss_pred CeEEEEeCCCccc-cceeeeCcccceEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCceeeeeccCC---cC
Q 012994 268 CNCYSYDSRKLDE-AKCVHMGHESAVMDIDYSPTGREFVTGSY----------DRTIRIFQYNGGRSREIYHTKR---MQ 333 (452)
Q Consensus 268 ~~i~~~d~~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~---~~ 333 (452)
+.|+.|+...... ....+....+ ...+++.++|++.++... .+.|..+|.. ++....+.... ..
T Consensus 207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~ 284 (322)
T 2fp8_A 207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGE 284 (322)
T ss_dssp TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTS
T ss_pred CeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccc
Confidence 9999999874211 1111111122 778999999987666544 4678888875 56555553332 24
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.++++++ .+++++++...++.|.++++..
T Consensus 285 ~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 285 HFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 5677777 4666666666788899998754
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.13 E-value=1.7e-09 Score=99.78 Aligned_cols=232 Identities=11% Similarity=0.068 Sum_probs=153.1
Q ss_pred CCCcceEEEe-eCCCcEEEEeCCCCceEEEeec-CCCCeeEEEE-c-cCCCeEEEEe------------------CCCcE
Q 012994 76 PNYLKGFFSG-SMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTV-S-TDGRILVSCG------------------TDCTV 133 (452)
Q Consensus 76 ~~~~~~l~tg-~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~-~-~~~~~l~s~~------------------~dg~v 133 (452)
+|| ++++.. ..++.|.+.|+.+.+....+.- .......+++ + |++++++.++ .++.+
T Consensus 99 ~DG-~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDG-RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEE-EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCC-CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 477 555554 4566799999999998774432 2346888998 5 8999998884 24578
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-------------------------------
Q 012994 134 KLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG------------------------------- 182 (452)
Q Consensus 134 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 182 (452)
.+.|..+.+.... .........++.+++|.++++.+
T Consensus 178 tvID~~t~~v~~q-------------I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 178 TAVDADKWEVAWQ-------------VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp EEEETTTTEEEEE-------------EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred EEEECCCCeEEEE-------------EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 8889876533222 22222334455555555544432
Q ss_pred ---------CeEEEEeCCC--CCc-ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC------------C
Q 012994 183 ---------AQVDIWNHNR--SQP-INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS------------P 238 (452)
Q Consensus 183 ---------~~i~i~d~~~--~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~ 238 (452)
+.|.+.|..+ ++. +..+.. .....++.++|+|..+++++..+.+|.++|+.+.+ .
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 2367777776 444 344433 24567899999997777788889999999998653 2
Q ss_pred ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCc---------cccceeeeCc-----ccceEEEEEcCCCCEE
Q 012994 239 ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL---------DEAKCVHMGH-----ESAVMDIDYSPTGREF 304 (452)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~-----~~~v~~~~~s~~g~~l 304 (452)
............++|+|++ ..+++...++.+..||+... .........| ...-.++.++|||++|
T Consensus 324 ~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l 402 (595)
T 1fwx_A 324 VAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWL 402 (595)
T ss_dssp EECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEE
T ss_pred EEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEE
Confidence 3344455677889999999 88889999999999998762 1222222222 2222344668999999
Q ss_pred EEEeC---CCe----------EEEEECCCCce
Q 012994 305 VTGSY---DRT----------IRIFQYNGGRS 323 (452)
Q Consensus 305 ~s~~~---dg~----------i~iwd~~~~~~ 323 (452)
+++.. |+. -.++|+..++.
T Consensus 403 ~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 403 VCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp EEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred EEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 98764 432 18899965553
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.09 E-value=3.9e-09 Score=93.35 Aligned_cols=265 Identities=11% Similarity=0.028 Sum_probs=160.2
Q ss_pred EEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 012994 70 SCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDS 149 (452)
Q Consensus 70 ~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 149 (452)
.+..+..+ ..+..++.++.|..|| .+++....+..+...+.++...+++. |..++.+ |..+|. ++........
T Consensus 23 ~~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~ 95 (330)
T 3hxj_A 23 SSPILAKN--GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDT 95 (330)
T ss_dssp CCCEECTT--SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC
T ss_pred cCceEccC--CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEEC
Confidence 34455555 4577788899999999 88887766655555567777776665 5555544 888886 5544333221
Q ss_pred CCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeE
Q 012994 150 TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSI 228 (452)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 228 (452)
... ........ ++.+++.. ++.+..+|.. ++...........+.++...+++ . +..++.++.|
T Consensus 96 ~~~------------~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l 159 (330)
T 3hxj_A 96 KKA------------IVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYL 159 (330)
T ss_dssp -----------------CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEE
T ss_pred CCC------------cccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEE
Confidence 110 01111122 55555544 4679999988 77666655555556666776655 3 6667788999
Q ss_pred EEEEccCCCCceEEEeec-ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE
Q 012994 229 TLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG 307 (452)
Q Consensus 229 ~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~ 307 (452)
..||.. +.......... ....+...+++. +.+++ +.++.+| .+..... ........+.++...++|. |..+
T Consensus 160 ~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~--l~v~t--~~l~~~d-~~g~~~~-~~~~~~~~~~~~~~~~~g~-l~v~ 231 (330)
T 3hxj_A 160 YAINPD-GTEKWRFKTNDAITSAASIGKDGT--IYFGS--DKVYAIN-PDGTEKW-NFYAGYWTVTRPAISEDGT-IYVT 231 (330)
T ss_dssp EEECTT-SCEEEEEECSSCCCSCCEECTTCC--EEEES--SSEEEEC-TTSCEEE-EECCSSCCCSCCEECTTSC-EEEE
T ss_pred EEECCC-CCEeEEEecCCCceeeeEEcCCCE--EEEEe--CEEEEEC-CCCcEEE-EEccCCcceeceEECCCCe-EEEE
Confidence 999988 66555554432 233444444444 33444 8888898 4333222 2223335677888888875 5556
Q ss_pred eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 308 SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 308 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
+.++.|..+|. ++.....+.... ..+..+.+.+++. |..++.+|.|..+|. +++.+..
T Consensus 232 t~~~gl~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 232 SLDGHLYAINP-DGTEKWRFKTGK-RIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp ETTTEEEEECT-TSCEEEEEECSS-CCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEE
T ss_pred cCCCeEEEECC-CCCEeEEeeCCC-CccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEE
Confidence 66788888875 455544443322 2334456665665 666788888999996 5665443
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.09 E-value=2.4e-08 Score=83.56 Aligned_cols=195 Identities=10% Similarity=0.041 Sum_probs=140.8
Q ss_pred eeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCC-ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce
Q 012994 166 FWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTD-TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR 240 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 240 (452)
...+.+++++.++++.+ +.|.++|..+++.+..+..... ....+++. +..++++.-.++.+.++|..+.+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 36788999887777654 4799999999998888754322 23345555 44666777778999999999998888
Q ss_pred EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc----cceEEEEEcCCCCEEEEEeCCCeEEEE
Q 012994 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE----SAVMDIDYSPTGREFVTGSYDRTIRIF 316 (452)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~v~~~~~s~~g~~l~s~~~dg~i~iw 316 (452)
.+... ......+++++..++++. .++.+.++|..+......+..+.. ..++.+.|. +|...+....++.|.+.
T Consensus 101 ~i~~g-~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 101 NFTHQ-MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp EEECC-SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEECC-CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 87765 233455667888777665 688999999988776655543321 136678888 77655555568899999
Q ss_pred ECCCCceeeeeccC------------CcCcEEEEEEcCCCCE-EEEeeCCCcEEEeeccccc
Q 012994 317 QYNGGRSREIYHTK------------RMQRVFCVKFSCDASY-VISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 317 d~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~ 365 (452)
|..+++....+... .......++|+|+++. ++++...+.+.+.++....
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 99999887776432 1135689999999865 5556678889888887643
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.08 E-value=1.3e-07 Score=80.65 Aligned_cols=221 Identities=8% Similarity=-0.008 Sum_probs=138.2
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~ 145 (452)
..+.+++|++++..++++-..++.|..+++........+........++++++++..|+.+ ...+.|.++++.....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 4578999999763555565667899999987655433333333568899999976555544 4567899999853311
Q ss_pred CCCCCCCCCCCeeEEEe-cCCeeeeeecCC-CCeEEEeC----CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 146 SDDSTDNSSEPLAVYVW-KNSFWAVDHQWE-GDLFATAG----AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 146 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
...... ......++++++ +.++++.. +.|..+++..................+++++++..++
T Consensus 114 -----------~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~ly 182 (267)
T 1npe_A 114 -----------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182 (267)
T ss_dssp -----------EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEE
T ss_pred -----------EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEE
Confidence 111111 134577889985 55555543 3577777764332222222335678999999876677
Q ss_pred EEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC
Q 012994 220 ATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP 299 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~ 299 (452)
++....+.|..+|+.................++ +++..++++....+.|..+|..+......+..+.......+++.|
T Consensus 183 v~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~--~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 183 WVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVT--SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEETTTTEEEEEETTEEEEEEEEECCCSEEEEE--EETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEECCCCEEEEEecCCCceEEEecCCCCceEEE--EeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecC
Confidence 777778899999987543322222222333444 346777777778889999998876554444333333466777777
Q ss_pred CCC
Q 012994 300 TGR 302 (452)
Q Consensus 300 ~g~ 302 (452)
++.
T Consensus 261 ~~~ 263 (267)
T 1npe_A 261 SQC 263 (267)
T ss_dssp SCC
T ss_pred ccC
Confidence 653
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.06 E-value=1.1e-07 Score=90.13 Aligned_cols=281 Identities=10% Similarity=0.046 Sum_probs=167.8
Q ss_pred ceEEEeeC-CCcEEEEeC-CCCceEEEeecCCCC-----------eeEEEEccCCCe----EEEEeCCCcEEEEeCCCCC
Q 012994 80 KGFFSGSM-DGDIRLWDI-ANRRTVCQYSGHQGA-----------VRGLTVSTDGRI----LVSCGTDCTVKLWNVPVAT 142 (452)
Q Consensus 80 ~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~h~~~-----------v~~l~~~~~~~~----l~s~~~dg~v~iwd~~~~~ 142 (452)
..+++++. ++.|.-+|. .+|+.+..+...... ...++++|.+.. |+.++.|+.|..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 45667776 899999999 899998877532211 123455443444 8888899999999999887
Q ss_pred CCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCCCc----------
Q 012994 143 LTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTDT---------- 205 (452)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~---------- 205 (452)
........... ....+.+--.-.++.+++.. ++.|..+|..+++.+..+......
T Consensus 143 ~~W~~~~~~~~--------~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~ 214 (599)
T 1w6s_A 143 TVWKVENSDIK--------VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN 214 (599)
T ss_dssp EEEEEECCCGG--------GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred EEEeecCCCCC--------ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence 65332211100 00011100001134444433 357999999998877655432111
Q ss_pred ---------------------------e-EEEEECCCCCcEEEEEecC----------------CeEEEEEccCCCCceE
Q 012994 206 ---------------------------V-ISVRFNPAEPNVLATTASD----------------RSITLYDLRMSSPARK 241 (452)
Q Consensus 206 ---------------------------i-~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~ 241 (452)
+ ..+++.+.. .+++.+..+ +.|..+|..+++....
T Consensus 215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~ 293 (599)
T 1w6s_A 215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFG 293 (599)
T ss_dssp TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEE
T ss_pred cccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeE
Confidence 0 123444555 456666554 3799999999988877
Q ss_pred EEeeccc--------ceEEEc---cCCC--ceEEeecCCCeEEEEeCCCccccceeeeCc------------ccce----
Q 012994 242 VIMRTKS--------NSISWN---PMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGH------------ESAV---- 292 (452)
Q Consensus 242 ~~~~~~~--------~~~~~~---~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~~v---- 292 (452)
+...... ..+... .++. .+++.++.+|.++.+|..+.+......... ..++
T Consensus 294 ~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~ 373 (599)
T 1w6s_A 294 YQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPE 373 (599)
T ss_dssp EESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGG
T ss_pred eecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccc
Confidence 7654220 111121 3443 457778899999999988765443222110 0011
Q ss_pred ----------------------EEEEEcCCCCEEEEEe---------------------------------------CCC
Q 012994 293 ----------------------MDIDYSPTGREFVTGS---------------------------------------YDR 311 (452)
Q Consensus 293 ----------------------~~~~~s~~g~~l~s~~---------------------------------------~dg 311 (452)
..++++|+..++++.. .+|
T Consensus 374 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G 453 (599)
T 1w6s_A 374 YGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLG 453 (599)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCE
T ss_pred cCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcC
Confidence 2356677655554421 357
Q ss_pred eEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 312 TIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.|..||+.+++.+....... +...-.....+.+++.++.||.++.||..+|+.+-.++
T Consensus 454 ~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 454 QIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 89999999998877664331 12111122356778889999999999999999986653
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.06 E-value=4.9e-08 Score=92.52 Aligned_cols=279 Identities=11% Similarity=0.069 Sum_probs=167.8
Q ss_pred ceEEEeeC-CCcEEEEeC-CCCceEEEeecCCC-Ce----------eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 80 KGFFSGSM-DGDIRLWDI-ANRRTVCQYSGHQG-AV----------RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 80 ~~l~tg~~-dg~i~iwd~-~~~~~~~~~~~h~~-~v----------~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
..++.++. ++.|.-+|. .+|+.+..+..... .+ ..++. .+..++.++.|+.|..+|..+++....
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 45666776 899999999 89998877653221 00 11222 355788888899999999998866533
Q ss_pred CCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-------CCeEEEEeCCCCCcceecccCCCc--------------
Q 012994 147 DDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-------GAQVDIWNHNRSQPINSFQWGTDT-------------- 205 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~i~d~~~~~~~~~~~~~~~~-------------- 205 (452)
........ ...+.+.-.-.++.+++.. ++.+..+|..+++.+..+......
T Consensus 141 ~~~~~~~~--------~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~ 212 (571)
T 2ad6_A 141 VEVCDPKV--------GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANP 212 (571)
T ss_dssp EECCCGGG--------TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred ecCCCCCc--------cceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccc
Confidence 22111000 0001100001144444443 357999999998877655432110
Q ss_pred ------------------------eEEEEECCCCCcEEEEEecC----------------CeEEEEEccCCCCceEEEee
Q 012994 206 ------------------------VISVRFNPAEPNVLATTASD----------------RSITLYDLRMSSPARKVIMR 245 (452)
Q Consensus 206 ------------------------i~~~~~~~~~~~~l~~~~~d----------------g~i~i~d~~~~~~~~~~~~~ 245 (452)
-..+++.+.. ..++.+..+ +.|..+|..+++....+...
T Consensus 213 ~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~-g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~ 291 (571)
T 2ad6_A 213 HYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKL-NLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKT 291 (571)
T ss_dssp GGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESS
T ss_pred cccccccccccCcccceecCCCCeeeeEEEcCCC-CeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCC
Confidence 0124455554 345444422 36999999999888777643
Q ss_pred cc-------cce---EEEccCCC--ceEEeecCCCeEEEEeCCCccccceeeeCc------------ccce---------
Q 012994 246 TK-------SNS---ISWNPMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGH------------ESAV--------- 292 (452)
Q Consensus 246 ~~-------~~~---~~~~~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~~v--------- 292 (452)
.. ... +....++. .+++.++.++.++.+|..+.+......... ..++
T Consensus 292 ~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 371 (571)
T 2ad6_A 292 PHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRM 371 (571)
T ss_dssp TTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCT
T ss_pred CCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCC
Confidence 21 111 11123443 456778889999999988765443322111 0111
Q ss_pred -----------------EEEEEcCCCCEEEEEe-------------------------------------CCCeEEEEEC
Q 012994 293 -----------------MDIDYSPTGREFVTGS-------------------------------------YDRTIRIFQY 318 (452)
Q Consensus 293 -----------------~~~~~s~~g~~l~s~~-------------------------------------~dg~i~iwd~ 318 (452)
..++++|+..+|++.+ .+|.|..||+
T Consensus 372 ~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~ 451 (571)
T 2ad6_A 372 DHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDL 451 (571)
T ss_dssp TCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECT
T ss_pred CCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEEC
Confidence 2457888777766653 3578999999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+++.+..+.... .+....+...+..++.++.||.|+.||..+|+.+..+.
T Consensus 452 ~tG~~~W~~~~~~--~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 452 TTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp TTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEecCCC--CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 9999877764432 22222233346678889999999999999999987664
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=4.7e-11 Score=107.13 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=77.9
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEcc--CCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEE
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNP--MEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMD 294 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~ 294 (452)
.++++++.||.|+.||..+++............ +..+| .....+++++.++.++.||..+.+....... +. .
T Consensus 50 ~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~ 123 (369)
T 2hz6_A 50 PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-VQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----A 123 (369)
T ss_dssp CCEEECTTTCCEEEC-----CCSEECSCCHHHH-HTTCSCC-----CCCCEEEEEEEEECCC------------------
T ss_pred CEEEEeCCCCEEEEEECCCCceeeeeeccCccc-cccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----c
Confidence 567777899999999998887765543221100 00111 0223466777889999999987665443322 11 2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC---CEEEEeeCCCcEEEeeccccccccc
Q 012994 295 IDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA---SYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 295 ~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
..++|++..+++++.|+.|+.||..+|+.+..+.... ....+++++. ..+++++.||.|+.||..+|+.+-.
T Consensus 124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 3456788899999999999999999998766553221 2223344332 4577788899999999999887543
No 244
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.05 E-value=1e-08 Score=100.24 Aligned_cols=136 Identities=10% Similarity=0.139 Sum_probs=85.8
Q ss_pred CeEEEEEccCCCCceEEEeec------ccceEEEccCCCceEEeecC---CCeEEEEeCCCccccceeeeCcccceEEEE
Q 012994 226 RSITLYDLRMSSPARKVIMRT------KSNSISWNPMEPMNFTAANE---DCNCYSYDSRKLDEAKCVHMGHESAVMDID 296 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~ 296 (452)
..|++|++.+........... ....+.++|++..++++... ...++++|+.........+..+.......
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~- 286 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL- 286 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence 348999988766543333222 13578899999988776543 35899999877643334444555555554
Q ss_pred EcCCCCEEEE-EeCC---CeEEEEECCCCce--eeeeccCCcCcEEEEEEcCCCCEEEEeeC-CC--cEEEeeccccc
Q 012994 297 YSPTGREFVT-GSYD---RTIRIFQYNGGRS--REIYHTKRMQRVFCVKFSCDASYVISGSD-DT--NLRLWKAKASE 365 (452)
Q Consensus 297 ~s~~g~~l~s-~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg--~i~iw~~~~~~ 365 (452)
++++|..|+. ...+ +.|..+|+.++.. ...+..+. ..+. .|++++++|+.... +| .|++|++..+.
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER-QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC-CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe
Confidence 6666665554 4333 6799999988654 12222222 3333 88999988776654 43 68899987543
No 245
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=99.03 E-value=1.1e-06 Score=76.47 Aligned_cols=234 Identities=10% Similarity=0.058 Sum_probs=144.3
Q ss_pred CceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeE
Q 012994 99 RRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLF 178 (452)
Q Consensus 99 ~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (452)
.+.+..+.. ......++|+++++++++-..++.|..||.... .............+++.+++.++
T Consensus 22 ~~~~~~~p~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--------------~~~~~~~~~~p~gia~~~dG~l~ 86 (306)
T 2p4o_A 22 AKIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--------------QQIHATVEGKVSGLAFTSNGDLV 86 (306)
T ss_dssp EEEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--------------EEEEEECSSEEEEEEECTTSCEE
T ss_pred ceEeEeCCC-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc--------------eEEEEeCCCCceeEEEcCCCcEE
Confidence 344555543 256788999999887777667889999987532 11222334457788999999987
Q ss_pred EEeCC--e--EEEEeCCCCCcceeccc-CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCC-ceEEE-------e-
Q 012994 179 ATAGA--Q--VDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSP-ARKVI-------M- 244 (452)
Q Consensus 179 ~~~~~--~--i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~-------~- 244 (452)
++..+ . +..++..+++....... .......++..+.+ ..+++...++.|..+|...... +.... .
T Consensus 87 vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~ 165 (306)
T 2p4o_A 87 ATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE 165 (306)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred EEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCcccccccc
Confidence 77632 3 66677777664322221 12233455555533 4555555688898888764321 10000 0
Q ss_pred e--cccceEEEccCCCceEEeecCCCeEEEEeCCCcccc--ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 245 R--TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 245 ~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
. ...+.+ ++++..++++....+.|+.|+....... ...+. .......++++++|++.++....+.|.++|..
T Consensus 166 ~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~- 241 (306)
T 2p4o_A 166 SVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD- 241 (306)
T ss_dssp CCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-
T ss_pred CCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-
Confidence 0 112334 7888888888888999999998641111 11111 11345678999999887777778899999976
Q ss_pred Cceee--eeccCCcCcEEEEEEc---CCCCEEEEeeCC
Q 012994 321 GRSRE--IYHTKRMQRVFCVKFS---CDASYVISGSDD 353 (452)
Q Consensus 321 ~~~~~--~~~~~~~~~v~~~~~s---~~~~~l~s~~~d 353 (452)
++... ..... ....++++|. |+++.|+.++..
T Consensus 242 G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 242 RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 55432 22222 2568999998 888777765544
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.02 E-value=2.5e-07 Score=77.42 Aligned_cols=202 Identities=9% Similarity=0.007 Sum_probs=139.5
Q ss_pred ccccccccccc--cEEEEEeCCCCcceEEEeeC--CCcEEEEeCCCCceEEEeecCC-CCeeEEEEccCCCeEEEE-eCC
Q 012994 57 PFIGALDGHRD--GISCMAKNPNYLKGFFSGSM--DGDIRLWDIANRRTVCQYSGHQ-GAVRGLTVSTDGRILVSC-GTD 130 (452)
Q Consensus 57 ~~~~~l~~h~~--~V~~~~~~~~~~~~l~tg~~--dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~l~s~-~~d 130 (452)
..+.++ .|.. ....++|+|++ .++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+.+ -.+
T Consensus 10 ~vv~~~-p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 10 EVLNEF-PHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEE-ECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred eEEEEE-ECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 344555 3443 36899999986 65555543 6799999999999988875222 122345554 4455444 457
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCC-----
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT----- 203 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~----- 203 (452)
+.+.++|..+.+.+..+ ... .-....+++++..++.++ +.+.++|..+.+.+..+....
T Consensus 86 ~~v~viD~~t~~v~~~i-------------~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNF-------------THQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV 151 (266)
T ss_dssp SEEEEEETTTTEEEEEE-------------ECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred CEEEEEECCCCcEEEEE-------------ECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence 89999999877543322 111 011233445665554444 479999999988887776422
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec--------------ccceEEEccCCCceEEeecCCCe
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT--------------KSNSISWNPMEPMNFTAANEDCN 269 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
..++.+.|. ++ .+++....++.|.+.|..+++.+..+.... ..+.++++|++..+++++...+.
T Consensus 152 ~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~ 229 (266)
T 2iwa_A 152 IRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK 229 (266)
T ss_dssp CCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred ccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence 136677777 45 666666678999999999999998888642 34789999999999999999999
Q ss_pred EEEEeCCCc
Q 012994 270 CYSYDSRKL 278 (452)
Q Consensus 270 i~~~d~~~~ 278 (452)
++..++...
T Consensus 230 v~~i~l~~~ 238 (266)
T 2iwa_A 230 LFEIKLHLV 238 (266)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecc
Confidence 999987654
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.99 E-value=1.4e-07 Score=89.33 Aligned_cols=264 Identities=9% Similarity=0.026 Sum_probs=152.4
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCC----CCeeE-EEEccCCCeEEEEeC------CCcEEEEeCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQ----GAVRG-LTVSTDGRILVSCGT------DCTVKLWNVPVATLTDSDD 148 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~----~~v~~-l~~~~~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~ 148 (452)
..++.++.|+.|..+|..+|+.+....... ..+.+ .... ++ .++.++. +|.|..+|..+++......
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 567888889999999999999887765321 01211 1111 34 5555554 7899999999987654332
Q ss_pred CCCCCC-----------CCe------eEEEe---------cCCeeeeeecCCCCeEEEeC------------------Ce
Q 012994 149 STDNSS-----------EPL------AVYVW---------KNSFWAVDHQWEGDLFATAG------------------AQ 184 (452)
Q Consensus 149 ~~~~~~-----------~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~------------------~~ 184 (452)
...... .+. ....+ ......+++.+....+..+. +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 211100 000 00000 00001234444444443332 24
Q ss_pred EEEEeCCCCCcceecccCC----------CceEEEEECCCCC--cEEEEEecCCeEEEEEccCCCCceEEEeeccc----
Q 012994 185 VDIWNHNRSQPINSFQWGT----------DTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRTKS---- 248 (452)
Q Consensus 185 i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---- 248 (452)
+..+|..+++.+..++... .++. +....++. .+++.++.+|.+.++|..+++.+.........
T Consensus 274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 8899999998877665321 1221 22223442 35778888999999999998877665543210
Q ss_pred ------------------------------------ceEEEccCCCceEEeec---------------------------
Q 012994 249 ------------------------------------NSISWNPMEPMNFTAAN--------------------------- 265 (452)
Q Consensus 249 ------------------------------------~~~~~~~~~~~~~~~~~--------------------------- 265 (452)
..++++|+...+++...
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 13456666665555432
Q ss_pred ---------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEE
Q 012994 266 ---------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 266 ---------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
..+.++.+|..+.+..-....+ ..+....+...+..++.++.||.|+.||..+++.+..+.......-.
T Consensus 433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~ 510 (571)
T 2ad6_A 433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS 510 (571)
T ss_dssp ECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred cCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence 3578899998876654443322 12222222334567788999999999999999998887655422222
Q ss_pred EEEEcCCCCEEE
Q 012994 337 CVKFSCDASYVI 348 (452)
Q Consensus 337 ~~~~s~~~~~l~ 348 (452)
-+.+..+|+.++
T Consensus 511 p~~~~~~G~~yv 522 (571)
T 2ad6_A 511 PMTYSFKGKQYI 522 (571)
T ss_dssp CEEEEETTEEEE
T ss_pred eEEEEECCEEEE
Confidence 234556776444
No 248
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.99 E-value=1.2e-07 Score=84.11 Aligned_cols=226 Identities=10% Similarity=-0.026 Sum_probs=134.3
Q ss_pred ccccccEEEEEeCCCCcceEEEeeC-----CCcEEEEeCCCCceEEEeecC------CCCeeEEEEccCCCeE-EEEe--
Q 012994 63 DGHRDGISCMAKNPNYLKGFFSGSM-----DGDIRLWDIANRRTVCQYSGH------QGAVRGLTVSTDGRIL-VSCG-- 128 (452)
Q Consensus 63 ~~h~~~V~~~~~~~~~~~~l~tg~~-----dg~i~iwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~l-~s~~-- 128 (452)
.+|-..+.++++++++ +++++-.. ++.|.+||+.+++.+..+... ...+..+++++++..+ ++..
T Consensus 63 ~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred ccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 3567789999999997 66665433 578999999999877666432 2456899999865444 5544
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCc
Q 012994 129 -TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDT 205 (452)
Q Consensus 129 -~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~ 205 (452)
.++.|.+||+.+++.......... ..+ ....+..+|..+.+.+ +.+..| ...
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~-~~~----------~~~~~~~~g~~~~~~~~~g~~~~~--------------~~~ 196 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPG-IAP----------EDIDLVIDGVPVQIGQPDGTVIRP--------------HLG 196 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTT-TSC----------CSCCCEETTEECBEECTTSCEECC--------------CCC
T ss_pred CCCCeEEEEECCCCCEEEEecCCCc-ccc----------cccceeECCEEEEeccCCCceece--------------ecc
Confidence 578999999987654322211000 000 0011122232222111 222222 124
Q ss_pred eEEEEECCCCCcEEEEEecCC-eEEEEEccC---CC--------CceEEEeecccceEEEccCCCceEEeecCCCeEEEE
Q 012994 206 VISVRFNPAEPNVLATTASDR-SITLYDLRM---SS--------PARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
+..++++|++ +.|+.+..++ .+..++... .. .+...........+++.+++ .++++...++.|..|
T Consensus 197 ~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~ 274 (343)
T 2qe8_A 197 VNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVI 274 (343)
T ss_dssp EEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEE
T ss_pred cceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEE
Confidence 6789999988 5555655554 555555321 11 01122223356788999886 567788888999999
Q ss_pred eCCCccccceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 012994 274 DSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQ 317 (452)
Q Consensus 274 d~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd 317 (452)
|..... ...... .+...+.+++|.++|.++++.+..+.+.+|.
T Consensus 275 d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 275 TSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 983322 222222 2245688999999998888777555444443
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.98 E-value=3.1e-06 Score=84.21 Aligned_cols=283 Identities=9% Similarity=0.064 Sum_probs=175.1
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQY-SGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (452)
|.++...+++ . |..|+.++.|..||..+++..... ..+...|.++...+++.+. .++.++-+..||..++......
T Consensus 175 i~~i~~d~~g-~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~ 251 (795)
T 4a2l_A 175 IASTLYRQGD-Q-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYL 251 (795)
T ss_dssp CEEEEEEETT-E-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEEC
T ss_pred eEEEEECCCC-C-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEee
Confidence 8888888876 4 444666556889998776543321 1234678888888777644 4554445888998765432211
Q ss_pred CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc-------cCCCceEEEEECCCCCcEEE
Q 012994 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ-------WGTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~l~ 220 (452)
...... .. .....+.++...++|.+.+...+.+.+||..++....... .....|.++...+++ . |.
T Consensus 252 ~~~~~~-~~----l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~-lW 324 (795)
T 4a2l_A 252 HSPSNP-KS----ISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-G-MW 324 (795)
T ss_dssp CCTTCT-TS----CSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-C-EE
T ss_pred cCCCCc-cc----cCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-C-EE
Confidence 110000 00 0134577888888898887776678999987664332211 124579999998877 3 55
Q ss_pred EEecCCeEEEEEccCCCCceEEEe--------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee------
Q 012994 221 TTASDRSITLYDLRMSSPARKVIM--------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM------ 286 (452)
Q Consensus 221 ~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~------ 286 (452)
.|+.++-|..|+....... .+.. ...+.++...++ ..+.+|+.++-+..|+..+..-......
T Consensus 325 igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~--g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKD--KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESAR 401 (795)
T ss_dssp EEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTT--SCEEEEESSSCEEEECTTTCCEEEECCC------
T ss_pred EEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCC--CCEEEEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence 6777778999987654322 1211 112334444443 3466777787888888765321111100
Q ss_pred -CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeecc---CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 287 -GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHT---KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 287 -~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.....|.+++..++|+.|..|+.++.|..||..+++....... .....|.++...++|.+.+. +. +.|.+|+..
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~ 479 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TL-SALVRFNPE 479 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ES-SCEEEEETT
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ec-CceeEEeCC
Confidence 1235689999988888566777777799999988765433221 12357999999988886654 44 458888887
Q ss_pred cccc
Q 012994 363 ASEQ 366 (452)
Q Consensus 363 ~~~~ 366 (452)
+++.
T Consensus 480 ~~~~ 483 (795)
T 4a2l_A 480 QRSF 483 (795)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 6543
No 250
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.95 E-value=6.8e-08 Score=93.69 Aligned_cols=268 Identities=12% Similarity=0.070 Sum_probs=148.5
Q ss_pred EEEeCC-CCcceEEEeeCCC-----------cEEEEeCCCCce--EEEee-cCCCCeeEEEEccCCCeEEEEeC-CCcEE
Q 012994 71 CMAKNP-NYLKGFFSGSMDG-----------DIRLWDIANRRT--VCQYS-GHQGAVRGLTVSTDGRILVSCGT-DCTVK 134 (452)
Q Consensus 71 ~~~~~~-~~~~~l~tg~~dg-----------~i~iwd~~~~~~--~~~~~-~h~~~v~~l~~~~~~~~l~s~~~-dg~v~ 134 (452)
++++.+ ++ ++++.|+.+. .+.+||..+++. +..+. .+.....++++..++++++.|+. ++.+.
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 456666 66 8888887543 588999887753 22332 23333445778889999999984 45899
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--------CeEEEEeCCCCCccee-----ccc
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--------AQVDIWNHNRSQPINS-----FQW 201 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~i~i~d~~~~~~~~~-----~~~ 201 (452)
+||..+.......... ....-.++...+++++++.++ .++.+||..+.+-... ...
T Consensus 269 ~yd~~t~~W~~~~~~~-----------~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~ 337 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQ-----------VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337 (656)
T ss_dssp EEEGGGTEEEECCCCS-----------SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred EecCcCCceeECCCCC-----------ccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence 9998766433221100 011122345556888888887 3589999987653221 000
Q ss_pred CCCceEEEEECCCCCcEEEEEecCC---------eEEEEEccCCCCceEEEeec----------ccceEEEccCCCceEE
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDR---------SITLYDLRMSSPARKVIMRT----------KSNSISWNPMEPMNFT 262 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 262 (452)
.... ....+..++ .+++.|+.+| .+..||..+..-........ ....+.+...+..+++
T Consensus 338 ~~~~-~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 338 LTAD-KQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp CCCC-TTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred cccc-ccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 0000 001112233 4555555444 46788887665332222111 1233444455666777
Q ss_pred eecCCC-----------eEEEEeCCCcccccee-eeCccc-ceEEEEEcCCCCEEEEEeCC-----------CeEEEEEC
Q 012994 263 AANEDC-----------NCYSYDSRKLDEAKCV-HMGHES-AVMDIDYSPTGREFVTGSYD-----------RTIRIFQY 318 (452)
Q Consensus 263 ~~~~~~-----------~i~~~d~~~~~~~~~~-~~~~~~-~v~~~~~s~~g~~l~s~~~d-----------g~i~iwd~ 318 (452)
.|+.+. .+.+||..+..-.... ...+.. .-.+++..|+|++++.|+.+ ..+.+||.
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 766432 5667776543211110 011111 22345677899999999864 46899999
Q ss_pred CCCceeeeeccCC-cCcEEEEEEcCCCCEEEEeeC
Q 012994 319 NGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 319 ~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~ 352 (452)
.+++-........ .....+..+.|||++++.||.
T Consensus 496 ~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 496 EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp GGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 8765433221111 112234556799999999885
No 251
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.93 E-value=1e-06 Score=83.53 Aligned_cols=283 Identities=12% Similarity=0.085 Sum_probs=162.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCe---------eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAV---------RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v---------~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
..++.++.++.|.-+|..+|+.+..+....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 446666664459999999999988776432210 12222 3457888889999999999998765433221
Q ss_pred CCCCCCeeEEEecCCeeeeeecCCCC-eEEEe--------CCeEEEEeCCCCCcceecccCCCce---------------
Q 012994 151 DNSSEPLAVYVWKNSFWAVDHQWEGD-LFATA--------GAQVDIWNHNRSQPINSFQWGTDTV--------------- 206 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~i~i~d~~~~~~~~~~~~~~~~i--------------- 206 (452)
..... . .....++ ...-..+++ .++++ .+.+..+|..+++.+.........+
T Consensus 147 ~~~~~-~--~~~~sP~-v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 147 DHGAG-Y--TMTGAPT-IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp CGGGT-C--BCCSCCE-EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTT
T ss_pred CCCcC-c--ccccCCE-EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccc
Confidence 10000 0 0000000 000001222 33332 3568888888888765443211000
Q ss_pred --------------------------EEEEECCCCCcEEEEEec--------------------C----CeEEEEEccCC
Q 012994 207 --------------------------ISVRFNPAEPNVLATTAS--------------------D----RSITLYDLRMS 236 (452)
Q Consensus 207 --------------------------~~~~~~~~~~~~l~~~~~--------------------d----g~i~i~d~~~~ 236 (452)
..+++.|.. .+++.+.. | +.|..+|..++
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~-g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG 301 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET-NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG 301 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT-TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCC-CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC
Confidence 123445554 45555442 2 68999999999
Q ss_pred CCceEEEeecc-------c-ceEEEc---cCCC--ceEEeecCCCeEEEEeCCCccccceeeeCc------------ccc
Q 012994 237 SPARKVIMRTK-------S-NSISWN---PMEP--MNFTAANEDCNCYSYDSRKLDEAKCVHMGH------------ESA 291 (452)
Q Consensus 237 ~~~~~~~~~~~-------~-~~~~~~---~~~~--~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~------------~~~ 291 (452)
+....+..... . ..+... .++. .+++.++.+|.++.+|..+.+......... ..+
T Consensus 302 ~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 381 (582)
T 1flg_A 302 EVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRP 381 (582)
T ss_dssp CEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCE
T ss_pred CEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCE
Confidence 98887765321 1 112222 3443 467788999999999987765433222111 000
Q ss_pred --------------------------------eEEEEEcCCCCEEEEEe-------------------------------
Q 012994 292 --------------------------------VMDIDYSPTGREFVTGS------------------------------- 308 (452)
Q Consensus 292 --------------------------------v~~~~~s~~g~~l~s~~------------------------------- 308 (452)
-..++++|+..++++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~ 461 (582)
T 1flg_A 382 VEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY 461 (582)
T ss_dssp EECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC
T ss_pred eEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC
Confidence 01356677655554432
Q ss_pred --CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 309 --YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 309 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+|.|..||+.+++.+....... ++..-.....+.+++.|+.||.++.||..+|+.+-.+.
T Consensus 462 ~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 462 DDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 36889999999999876654332 22221222246678889999999999999999987664
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.92 E-value=5e-07 Score=74.55 Aligned_cols=196 Identities=7% Similarity=0.086 Sum_probs=132.1
Q ss_pred eEEEecCCe--eeeeecCCCCeEEEeC--C--eEEEEeCCCCCcceecccCCCc-eEEEEECCCCCcEEEEEecCCeEEE
Q 012994 158 AVYVWKNSF--WAVDHQWEGDLFATAG--A--QVDIWNHNRSQPINSFQWGTDT-VISVRFNPAEPNVLATTASDRSITL 230 (452)
Q Consensus 158 ~~~~~~~~~--~~~~~~~~~~~~~~~~--~--~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i 230 (452)
..+.+.... ..+.++ ++.++.+.+ | .|..+|+.+++.+..+...... -..++.. +..++++.-.++.+.+
T Consensus 35 ~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred EEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 334444333 567777 566666654 2 6999999999998887654332 1234443 4466666667999999
Q ss_pred EEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-c---cceEEEEEcCCCCEEEE
Q 012994 231 YDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH-E---SAVMDIDYSPTGREFVT 306 (452)
Q Consensus 231 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~g~~l~s 306 (452)
||..+.+.+.++........++ +++..++++. .++.++++|..+......+..+. . ..++.+.|. +|...+.
T Consensus 112 ~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 112 WNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp EETTTCCEEEEEECSSCCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred EECccCcEEEEEECCCCceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 9999999999988765444444 5666655554 47899999999877655544321 1 234567776 7766665
Q ss_pred EeCCCeEEEEECCCCceeeeeccC-----------CcCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 307 GSYDRTIRIFQYNGGRSREIYHTK-----------RMQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 307 ~~~dg~i~iwd~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
.-.++.|.+.|..+++....+... .....+.++|+|+++.|+..+.. -=++|.+
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~-Wp~~~ev 252 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL-WPKVFEI 252 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT-CSEEEEE
T ss_pred EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC-CCceEEE
Confidence 556889999999999987665332 12357899999988877776643 2244443
No 253
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.87 E-value=1.6e-06 Score=70.87 Aligned_cols=189 Identities=8% Similarity=0.106 Sum_probs=128.6
Q ss_pred eeEEEecCC--eeeeeecCCCCeEEEeC----CeEEEEeCCCCCcceecccCCCc-eEEEEECCCCCcEEEEEecCCeEE
Q 012994 157 LAVYVWKNS--FWAVDHQWEGDLFATAG----AQVDIWNHNRSQPINSFQWGTDT-VISVRFNPAEPNVLATTASDRSIT 229 (452)
Q Consensus 157 ~~~~~~~~~--~~~~~~~~~~~~~~~~~----~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~ 229 (452)
+..+++... ...+.|+. +.++.+.+ +.|..+|+.+++.+..+...... -..+++. +..++...-.++.+.
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEE
Confidence 344455443 33677776 55555554 26999999999998887654332 1334443 446777777899999
Q ss_pred EEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-c---cceEEEEEcCCCCEEE
Q 012994 230 LYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH-E---SAVMDIDYSPTGREFV 305 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~g~~l~ 305 (452)
+||..+.+.+.++........++ +++..++++- .++.++++|..+......+..+. . ..++.+.|. +|...+
T Consensus 89 v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEGWALT--SDDSHLYMSD-GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEETTTTEEEEEEECSSCCCEEE--ECSSCEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCCCceEEe--eCCCEEEEEC-CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 99999999999988766554444 5666655554 58899999999876655444321 1 235566665 676665
Q ss_pred EEeCCCeEEEEECCCCceeeeeccC------------CcCcEEEEEEcCCCCEEEEeeC
Q 012994 306 TGSYDRTIRIFQYNGGRSREIYHTK------------RMQRVFCVKFSCDASYVISGSD 352 (452)
Q Consensus 306 s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~~ 352 (452)
..-.+..|.+.|..+++....+... ...-.+.++++|+++.|+..+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 5556789999999999987665322 2246789999998777766654
No 254
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.86 E-value=7.6e-07 Score=73.45 Aligned_cols=177 Identities=6% Similarity=0.004 Sum_probs=122.0
Q ss_pred eeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCCCc-eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE
Q 012994 167 WAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGTDT-VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI 243 (452)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 243 (452)
..+.++. +.++.+.+ +.|.++|+.+++.+..+ ..... -..+++. +..++++.-.++.+.+||..+.+.+.++.
T Consensus 58 qGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 58 QGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence 4666663 45555554 46999999999998887 43321 2335554 44677777789999999999999999988
Q ss_pred eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCc-c---cceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 244 MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGH-E---SAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~---~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.......++ +++..++++ ..++.++++|..+......+..+. . ..++.+.|. +|...+..-.+..|.+.|..
T Consensus 134 ~~~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 134 YSGEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp CSSCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred CCCceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 765544554 556655555 468899999998876655443321 1 234667777 77666555568899999999
Q ss_pred CCceeeeeccC------------CcCcEEEEEEcCCCCEEEEee
Q 012994 320 GGRSREIYHTK------------RMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 320 ~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~s~~ 351 (452)
+++....+... ...-.+.++|+|+++.|+..+
T Consensus 210 TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 210 TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99887665322 124678999999766555544
No 255
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.85 E-value=5.9e-06 Score=71.91 Aligned_cols=228 Identities=7% Similarity=-0.002 Sum_probs=133.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC--cEEEEeCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC--TVKLWNVPVATLT 144 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg--~v~iwd~~~~~~~ 144 (452)
.....++|++++ +++++-..++.|..||... .....+. .......+++.++++++++..... .|..+|..+++..
T Consensus 32 ~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDG-TIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTS-CEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCC-CEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 567899999998 7777766789999999765 3333333 345688999999998665544332 3666676655432
Q ss_pred CCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe--CCeEEEEeCCCCCc-ce---------ecccCCCceEEEEEC
Q 012994 145 DSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA--GAQVDIWNHNRSQP-IN---------SFQWGTDTVISVRFN 212 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~d~~~~~~-~~---------~~~~~~~~i~~~~~~ 212 (452)
...... .......++..+++..+++. .+.|..+|...+.. +. .....-.....+ +
T Consensus 109 ~~~~~~-----------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 109 TLLTLP-----------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECT-----------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEeCC-----------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 110000 00111223333444445544 35677888765321 11 001111234555 6
Q ss_pred CCCCcEEEEEecCCeEEEEEccC-CCC--ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcc
Q 012994 213 PAEPNVLATTASDRSITLYDLRM-SSP--ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHE 289 (452)
Q Consensus 213 ~~~~~~l~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 289 (452)
+++..++++-...+.|..||+.. +.. ...+........+++.+++. ++++....+.|..+|...............
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~~~~~~~~~~~~ 254 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRSTTIIAQAEQGV 254 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCCEEEEECGGGTC
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCCEEEEeeccccc
Confidence 77756667777788999999875 221 12222224567889999884 566666778899998752111111111223
Q ss_pred cceEEEEEc---CCCCEEEEEeCCC
Q 012994 290 SAVMDIDYS---PTGREFVTGSYDR 311 (452)
Q Consensus 290 ~~v~~~~~s---~~g~~l~s~~~dg 311 (452)
...++++|. |+++.|+.++..+
T Consensus 255 ~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 255 IGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCceEEEEecccCCCCEEEEECCCC
Confidence 458899998 8887777665543
No 256
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.85 E-value=1.3e-05 Score=70.94 Aligned_cols=243 Identities=13% Similarity=0.030 Sum_probs=151.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLT 144 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~ 144 (452)
.+..+|.+..++. +|+.+. ...|+..++........+. ....+..++|++.+..|+.+ ...+.|..+++......
T Consensus 33 ~d~~~C~~~~~~~--~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPEP--VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE 108 (349)
T ss_dssp TTSSCEEESSSCC--EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCCCcccccccCc--eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCce
Confidence 4456677777753 343333 3568888887655444333 34558899999865555544 45678988988654211
Q ss_pred CCCCCCCCCCCCeeEEE-ecCCeeeeeecCCCC-eEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEE
Q 012994 145 DSDDSTDNSSEPLAVYV-WKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLA 220 (452)
Q Consensus 145 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 220 (452)
.... .......+++.+.+. ++.+.. +.|.+.++........+.........+++.|.++.+++
T Consensus 109 -------------~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~ 175 (349)
T 3v64_C 109 -------------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYW 175 (349)
T ss_dssp -------------EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEE
T ss_pred -------------EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEE
Confidence 1111 112345677876544 444443 46888888765443333334456789999997766776
Q ss_pred EEecC-CeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEc
Q 012994 221 TTASD-RSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS 298 (452)
Q Consensus 221 ~~~~d-g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s 298 (452)
+-... +.|..+++.......... .-...+.++++|++..++++-...+.|..+|...... ..+..........+++
T Consensus 176 td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~giav- 253 (349)
T 3v64_C 176 TDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV- 253 (349)
T ss_dssp EECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEE-
T ss_pred eccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEEEE-
Confidence 66666 788888876543222111 1234678999999999999988889999999875332 2222223345667777
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 299 PTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 299 ~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
..+.++++-...+.|..++..+|+....+
T Consensus 254 ~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 254 FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 34555556556788888886666655444
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.85 E-value=1.1e-06 Score=72.58 Aligned_cols=195 Identities=12% Similarity=0.113 Sum_probs=131.9
Q ss_pred cccccccccccc--EEEEEeCCCCcceEEEeeCCC--cEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe-CCC
Q 012994 57 PFIGALDGHRDG--ISCMAKNPNYLKGFFSGSMDG--DIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDC 131 (452)
Q Consensus 57 ~~~~~l~~h~~~--V~~~~~~~~~~~~l~tg~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg 131 (452)
..+.++ .|... ...+.|+ ++ .++.+.+.+| .|+++|+.+++.+..+.-. .........++++.|+... .++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 445555 45544 4889998 55 7777777766 8999999999998887643 3343333333445555544 588
Q ss_pred cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC--CeEEEEeCCCCCcceecccCC-----C
Q 012994 132 TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG--AQVDIWNHNRSQPINSFQWGT-----D 204 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~-----~ 204 (452)
.+.+||..+.+.+..+ ..... ...+.+++..++.++ +.|.++|..+.+.+..+.... .
T Consensus 108 ~v~v~D~~t~~~~~ti-------------~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~ 172 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSF-------------NYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELP 172 (262)
T ss_dssp EEEEEETTTCCEEEEE-------------ECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECC
T ss_pred EEEEEECccCcEEEEE-------------ECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccc
Confidence 9999999887543332 22222 223335566555555 459999999998887765421 2
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec-------------ccceEEEccCCCceEEeecCCCeEE
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT-------------KSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
.++.+.|. ++ .+++....++.|.+.|..+++....+.... -.+.++++|++..++++|-.=..++
T Consensus 173 ~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ 250 (262)
T 3nol_A 173 ELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF 250 (262)
T ss_dssp CEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred ccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence 34557776 45 677666678899999999999988887631 3378999999999999887655544
Q ss_pred E
Q 012994 272 S 272 (452)
Q Consensus 272 ~ 272 (452)
-
T Consensus 251 e 251 (262)
T 3nol_A 251 E 251 (262)
T ss_dssp E
T ss_pred E
Confidence 3
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.84 E-value=9.8e-06 Score=72.89 Aligned_cols=242 Identities=13% Similarity=0.026 Sum_probs=150.7
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~ 146 (452)
.-+|.+..+. .+|+.+ ....|+.+++........+. ....+..++|.+.+..|+.+ ...+.|..+++......
T Consensus 78 ~~~C~~~~~~--~~l~~~-~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-- 151 (386)
T 3v65_B 78 RRSCKALGPE--PVLLFA-NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-- 151 (386)
T ss_dssp SSCEEECSSC--CEEEEE-CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--
T ss_pred CCeECCcccc--ceeEee-cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--
Confidence 4456666664 333333 34678889987665544443 34568899999865555544 45678989988654211
Q ss_pred CCCCCCCCCCeeEEE-ecCCeeeeeecCCCC-eEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE
Q 012994 147 DDSTDNSSEPLAVYV-WKNSFWAVDHQWEGD-LFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
.... .......+++.+.+. ++++.. +.|.+.++........+.........+++.|.++.++++-
T Consensus 152 -----------~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td 220 (386)
T 3v65_B 152 -----------EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 220 (386)
T ss_dssp -----------EEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -----------EEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEec
Confidence 1111 112345677776544 444433 4688888775544333443446788999999776666666
Q ss_pred ecC-CeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC
Q 012994 223 ASD-RSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT 300 (452)
Q Consensus 223 ~~d-g~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~ 300 (452)
... +.|..+++........... -...+.++++|++..++++-...+.|..+|...... ..+..........+++ ..
T Consensus 221 ~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~giav-~~ 298 (386)
T 3v65_B 221 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAITV-FE 298 (386)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEEEE-ET
T ss_pred cCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEEEE-EC
Confidence 555 7888888765433222211 224678999999999999988899999999875332 2222223345677887 34
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeec
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSREIYH 328 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 328 (452)
+.++++-...+.|..++..+++....+.
T Consensus 299 ~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 299 DSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 5556666667889989866666555543
No 259
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=4.1e-07 Score=88.12 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=156.7
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEcc--CCCeEEEEeC------CCcEEEEeCCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG-AVRGLTVST--DGRILVSCGT------DCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~~--~~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~~ 150 (452)
..++.++.|+.|..+|..+|+.+..+..... ....+..+| .+..++.+.. +|.|..+|..+++........
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 197 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTV 197 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEeccc
Confidence 5688888999999999999999887764211 001111111 1334555543 589999999999876544321
Q ss_pred CC-CCCC-----e-------------eEEEecCCeeeeeecCCCCeEEEeCC---------------------eEEEEeC
Q 012994 151 DN-SSEP-----L-------------AVYVWKNSFWAVDHQWEGDLFATAGA---------------------QVDIWNH 190 (452)
Q Consensus 151 ~~-~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~i~i~d~ 190 (452)
.. .... + ...........+++.++..+++.+.+ .|..+|.
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~ 277 (668)
T 1kv9_A 198 PGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRP 277 (668)
T ss_dssp CCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcC
Confidence 10 0000 0 00001112234566666666655432 3889999
Q ss_pred CCCCcceecccC--C-------CceEEEEECCCCC--cEEEEEecCCeEEEEEccCCCCceEEEeecc------------
Q 012994 191 NRSQPINSFQWG--T-------DTVISVRFNPAEP--NVLATTASDRSITLYDLRMSSPARKVIMRTK------------ 247 (452)
Q Consensus 191 ~~~~~~~~~~~~--~-------~~i~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------------ 247 (452)
.+++.+..++.. . .+.....+..++. ..++.++.+|.+.++|..+++.+........
T Consensus 278 ~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~ 357 (668)
T 1kv9_A 278 DTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGR 357 (668)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCC
T ss_pred CCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCC
Confidence 999988776542 1 2222222222342 2688899999999999999887744322110
Q ss_pred -------------------------cceEEEccCCCceEEee-----------------------------------cCC
Q 012994 248 -------------------------SNSISWNPMEPMNFTAA-----------------------------------NED 267 (452)
Q Consensus 248 -------------------------~~~~~~~~~~~~~~~~~-----------------------------------~~~ 267 (452)
-..++++|+...+++.. ..+
T Consensus 358 p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~ 437 (668)
T 1kv9_A 358 PVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS 437 (668)
T ss_dssp EEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred ccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc
Confidence 01245666655544311 123
Q ss_pred CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC-E
Q 012994 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS-Y 346 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 346 (452)
+.+..||..+.+..-....+ .+.....+...+.+++.++.||.++.||..+++.+..+.......-.-+.+..+|+ +
T Consensus 438 g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y 515 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (668)
T ss_dssp EEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence 77889998877655443322 22333334456788999999999999999999998877554311112234445666 4
Q ss_pred EEE
Q 012994 347 VIS 349 (452)
Q Consensus 347 l~s 349 (452)
++.
T Consensus 516 va~ 518 (668)
T 1kv9_A 516 VAI 518 (668)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.80 E-value=1.4e-05 Score=70.85 Aligned_cols=241 Identities=10% Similarity=0.030 Sum_probs=149.0
Q ss_pred eeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEE
Q 012994 112 VRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIW 188 (452)
Q Consensus 112 v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~ 188 (452)
.+|.+..++. +|+.+. ...|+..++.... .............++|++....+...+ +.|..+
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~-------------~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSE-------------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCC-------------EEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCe-------------eEEeecCCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 3455555533 333333 3457777764331 112222334567888887655555443 578889
Q ss_pred eCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecCC
Q 012994 189 NHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 189 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
++........+.........+++.+.+++++++-...+.|.+.++........... ......+++.|.+..++++-...
T Consensus 101 ~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp ETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred ecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence 88876544433333345678889886667777777788999999875443222211 23467899999888888887776
Q ss_pred -CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCC
Q 012994 268 -CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 268 -~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
+.|+.+++....... ...........++++|++..|+.+. ..+.|..+|+............ ......+++. .+.
T Consensus 181 ~~~I~r~~~dG~~~~~-~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~-~~~ 257 (349)
T 3v64_C 181 TPRIEASSMDGSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-EDS 257 (349)
T ss_dssp SCEEEEEETTSCSCEE-SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEE-TTE
T ss_pred CCEEEEEeCCCCCcEE-EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEE-CCE
Confidence 889999886533221 1122334578999998766665554 5678999998754433333222 3567788884 455
Q ss_pred EEEEeeCCCcEEEeecccccccccC
Q 012994 346 YVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 346 ~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
++++-...+.|..++..+|+.+..+
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEe
Confidence 5566666788888886667655444
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=4.1e-05 Score=76.17 Aligned_cols=280 Identities=8% Similarity=0.096 Sum_probs=171.2
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-------CCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-------HQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
...|.++...++| . |..|+.+ -|.+||..+++....... ....|.++...++|. |..|+.++-|..|+.
T Consensus 262 ~~~i~~i~~d~~g-~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 262 SNYIRSLAMDSQN-R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp CSBEEEEEECTTS-C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred CCeEEEEEEcCCC-C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 3569999999886 4 4555555 588999877654332211 235799999988876 556777777899987
Q ss_pred CCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecc--------cCCCceEEE
Q 012994 139 PVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQ--------WGTDTVISV 209 (452)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~--------~~~~~i~~~ 209 (452)
............. .. ......|.++....+|.+.+... +.+..|+..++....... .....|.++
T Consensus 338 ~~~~~~~~~~~~~--~~----~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 338 IRNRFKNIRNIPY--KN----SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp GGGSSEEECCCTT--SS----SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred CcccceEEcCCCC--CC----CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 6543321111000 00 01234678888888888777665 579999987765432211 124578899
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 283 (452)
...+++ .+|..|+.++-|..||..+++.. .+.. ...+.++...+++. +.+++. +.+..||..+......
T Consensus 412 ~~d~~g-~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~--lwigt~-~Gl~~~~~~~~~~~~~ 486 (795)
T 4a2l_A 412 YVDEKK-SLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGN--LWLGTL-SALVRFNPEQRSFTTI 486 (795)
T ss_dssp EEETTT-TEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSC--EEEEES-SCEEEEETTTTEEEEC
T ss_pred EEcCCC-CEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCC--EEEEec-CceeEEeCCCCeEEEc
Confidence 887766 53566777778999998765422 2211 12344555555444 444444 4578888765321111
Q ss_pred ee-----eCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec-----cCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 284 VH-----MGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-----TKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 284 ~~-----~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
.. .-....|.++...++|.+.+.. . +.|..||..++.. .... ......|.++..+++|.+.++. .+
T Consensus 487 ~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~ 562 (795)
T 4a2l_A 487 EKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE 562 (795)
T ss_dssp CBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS
T ss_pred cccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC
Confidence 10 1123568999999998866544 3 4588899877654 2110 1123569999999999866543 33
Q ss_pred CcEEEeeccccc
Q 012994 354 TNLRLWKAKASE 365 (452)
Q Consensus 354 g~i~iw~~~~~~ 365 (452)
-|..||..+++
T Consensus 563 -Gl~~~d~~~~~ 573 (795)
T 4a2l_A 563 -GFYCFNEKDKQ 573 (795)
T ss_dssp -CEEEEETTTTE
T ss_pred -CceeECCCCCc
Confidence 57788876553
No 262
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.77 E-value=3e-05 Score=67.69 Aligned_cols=225 Identities=10% Similarity=0.025 Sum_probs=139.1
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCC----CCcceecccCC
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNR----SQPINSFQWGT 203 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~----~~~~~~~~~~~ 203 (452)
..|+..|+..... ............+++++.+..+...+ +.|..+++.. ......+....
T Consensus 10 ~~I~~i~~~~~~~-------------~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 10 HEVRKMTLDRSEY-------------TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp SSEEEEETTSCCC-------------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred CeEEEEECCCcce-------------EehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 4688888865422 22222344567888887655444443 5788888876 22222222223
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCC-CeEEEEeCCCcccc
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANED-CNCYSYDSRKLDEA 281 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~ 281 (452)
.....+++.+.+++++++-...+.|.++|+........+. .......++..|.+..++++.... +.|+.+++......
T Consensus 77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~ 156 (316)
T 1ijq_A 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 156 (316)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE
Confidence 4567888887665777777778999999987543222222 124567889999888877776554 78888887643221
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeecc-CCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
......-.....++++|++..|+.+. ..+.|..+|+........... ........+++. .+.++++-...+.|..+
T Consensus 157 -~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 157 -SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (316)
T ss_dssp -EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred -EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence 12222345678999999776666554 567899999975433322221 122456788885 45556666677889999
Q ss_pred ecccccccccC
Q 012994 360 KAKASEQLGVL 370 (452)
Q Consensus 360 ~~~~~~~~~~~ 370 (452)
+..+|+.+..+
T Consensus 235 ~~~~g~~~~~i 245 (316)
T 1ijq_A 235 NRLTGSDVNLL 245 (316)
T ss_dssp ETTTCCCCEEE
T ss_pred eCCCCcceEEE
Confidence 88777655444
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.76 E-value=6.6e-06 Score=78.06 Aligned_cols=266 Identities=9% Similarity=0.027 Sum_probs=152.8
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCC----Cee-EEEEcc---CCC-eEEEEe------CCCcEEEEeCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQG----AVR-GLTVST---DGR-ILVSCG------TDCTVKLWNVPVATLT 144 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~---~~~-~l~s~~------~dg~v~iwd~~~~~~~ 144 (452)
..++.++.|+.|.-+|..+|+.+........ .+. ...... +++ .+++++ .+|.|..+|..+++..
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~ 197 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEI 197 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEE
Confidence 5678888999999999999998877653321 111 111111 233 566654 3789999999998765
Q ss_pred CCCCCCCCCCCC---eeEE--------------------------EecCCeeeeeecCCCCeEEEeC-------------
Q 012994 145 DSDDSTDNSSEP---LAVY--------------------------VWKNSFWAVDHQWEGDLFATAG------------- 182 (452)
Q Consensus 145 ~~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~------------- 182 (452)
...........+ .... .....-...++.+...+++.+.
T Consensus 198 W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~ 277 (582)
T 1flg_A 198 WMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTA 277 (582)
T ss_dssp EEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSC
T ss_pred eecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccccc
Confidence 432211000000 0000 0000112344555544444321
Q ss_pred -------------CeEEEEeCCCCCcceeccc--CC--------CceEEEEEC-CCCC--cEEEEEecCCeEEEEEccCC
Q 012994 183 -------------AQVDIWNHNRSQPINSFQW--GT--------DTVISVRFN-PAEP--NVLATTASDRSITLYDLRMS 236 (452)
Q Consensus 183 -------------~~i~i~d~~~~~~~~~~~~--~~--------~~i~~~~~~-~~~~--~~l~~~~~dg~i~i~d~~~~ 236 (452)
+.|..+|..+++.+..++. |. .++. +... .++. .+++.++.+|.++++|..++
T Consensus 278 ~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 278 KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 3688999999998877653 21 1221 1221 2342 36788999999999999998
Q ss_pred CCceEEEeeccc----------------------------------------------ceEEEccCCCceEEeec-----
Q 012994 237 SPARKVIMRTKS----------------------------------------------NSISWNPMEPMNFTAAN----- 265 (452)
Q Consensus 237 ~~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~----- 265 (452)
+.+........+ ..++++|....+++...
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 877665543200 12345555555444321
Q ss_pred ---------------------------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 266 ---------------------------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 266 ---------------------------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
..+.+..||..+.+..-...... ++..-.+...+.+++.|+.||.++.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~ 514 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence 35778888988766544333221 1211111224667888999999999999
Q ss_pred CCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 319 NGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 319 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
++|+.+..+.........-+.|..+|+..+
T Consensus 515 ~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 515 KSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 999999887665322222356667877433
No 264
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=5.4e-06 Score=78.57 Aligned_cols=263 Identities=10% Similarity=0.047 Sum_probs=149.1
Q ss_pred EEEeeCCCcEEEEeCCCCceEEEeecCCC----CeeE-EEEccCCCeEEEEe------CCCcEEEEeCCCCCCCCCCCCC
Q 012994 82 FFSGSMDGDIRLWDIANRRTVCQYSGHQG----AVRG-LTVSTDGRILVSCG------TDCTVKLWNVPVATLTDSDDST 150 (452)
Q Consensus 82 l~tg~~dg~i~iwd~~~~~~~~~~~~h~~----~v~~-l~~~~~~~~l~s~~------~dg~v~iwd~~~~~~~~~~~~~ 150 (452)
++.++.|+.|..+|..+|+.+........ .+.+ ... .++ .++.++ .+|.|..+|..+++........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 88888999999999999998877653220 2221 111 144 455554 3799999999998765433221
Q ss_pred CCCC-----------CCe------eEEEe--------cCCe-eeeeecCCCCeEEEeC------------------CeEE
Q 012994 151 DNSS-----------EPL------AVYVW--------KNSF-WAVDHQWEGDLFATAG------------------AQVD 186 (452)
Q Consensus 151 ~~~~-----------~~~------~~~~~--------~~~~-~~~~~~~~~~~~~~~~------------------~~i~ 186 (452)
.... .+. ....+ ...+ ...++.+...++..+. +.+.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 1100 000 00000 0001 1233444444444432 2688
Q ss_pred EEeCCCCCcceecccCCC----------ceEEEEEC-CCCC--cEEEEEecCCeEEEEEccCCCCceEEEeecc------
Q 012994 187 IWNHNRSQPINSFQWGTD----------TVISVRFN-PAEP--NVLATTASDRSITLYDLRMSSPARKVIMRTK------ 247 (452)
Q Consensus 187 i~d~~~~~~~~~~~~~~~----------~i~~~~~~-~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------ 247 (452)
.+|..+++.+..++.... ++. +... .++. ..++.++.+|.+.++|..+++.+........
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~ 360 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence 999999998876654221 121 2221 2342 4677788999999999999887766543210
Q ss_pred ----------------------------------cceEEEccCCCceEEee-----------------------------
Q 012994 248 ----------------------------------SNSISWNPMEPMNFTAA----------------------------- 264 (452)
Q Consensus 248 ----------------------------------~~~~~~~~~~~~~~~~~----------------------------- 264 (452)
-..++++|+...+++..
T Consensus 361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (599)
T 1w6s_A 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (599)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence 01344555544433321
Q ss_pred ---c------CCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcE
Q 012994 265 ---N------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRV 335 (452)
Q Consensus 265 ---~------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 335 (452)
+ ..+.+..||..+.+..-....+. +...-.+...+.+++.++.||.++.||.++|+.+..+........
T Consensus 441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF--AVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCcCCcccCCCcCeEEEEECCCCCEEeEecCCC--CccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 1 34678888887765544332221 111111222567788899999999999999999888755432222
Q ss_pred EEEEEcCCCCE-EEE
Q 012994 336 FCVKFSCDASY-VIS 349 (452)
Q Consensus 336 ~~~~~s~~~~~-l~s 349 (452)
.-+.+..+|+. +++
T Consensus 519 ~P~~y~~~G~qyv~~ 533 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAI 533 (599)
T ss_dssp CCEEEEETTEEEEEE
T ss_pred ccEEEEeCCEEEEEE
Confidence 33555567764 443
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.73 E-value=1.2e-05 Score=72.39 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=150.1
Q ss_pred eEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEe
Q 012994 113 RGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWN 189 (452)
Q Consensus 113 ~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d 189 (452)
.|.+..+. .+|+.+. ...|+.+++.... .............++|.+.+..+...+ +.|..++
T Consensus 80 ~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~-------------~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~ 144 (386)
T 3v65_B 80 SCKALGPE-PVLLFAN-RIDIRQVLPHRSE-------------YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 144 (386)
T ss_dssp CEEECSSC-CEEEEEC-BSCEEEECTTSCC-------------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eECCcccc-ceeEeec-CccceeeccCCCc-------------EEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 34444443 3444433 3568888875442 222223344567888987555444443 5788899
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEeecCC-
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTAANED- 267 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~- 267 (452)
.........+.........+++.+.++.++++-...+.|.+.++........+... .....+++.|.+..++++-...
T Consensus 145 ~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 145 LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp TTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred cCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 88765444333333456678888766677777777888998888654432222211 3567889999888888887666
Q ss_pred CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCE
Q 012994 268 CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASY 346 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 346 (452)
+.|+.+++....... +..........|+|+|++..|+.+ +..+.|..+|+............ ......+++. .+.+
T Consensus 225 ~~I~r~~~dG~~~~~-~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~-~~~l 301 (386)
T 3v65_B 225 PRIEASSMDGSGRRI-IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-EDSL 301 (386)
T ss_dssp CEEEEEETTSCSCEE-EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEEE-TTEE
T ss_pred CEEEEEeCCCCCcEE-EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEEE-CCEE
Confidence 889999887543222 222333457899999866665555 45678999998754433333222 3567888883 4555
Q ss_pred EEEeeCCCcEEEeecccccccccC
Q 012994 347 VISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 347 l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+++-...+.|..++..+|+.+..+
T Consensus 302 y~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEE
T ss_pred EEeeCCCCeEEEEECCCCcceEEE
Confidence 666667788888887677665544
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.72 E-value=9.2e-06 Score=74.10 Aligned_cols=237 Identities=11% Similarity=0.122 Sum_probs=144.6
Q ss_pred CeeEEEEccC--CCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC-----
Q 012994 111 AVRGLTVSTD--GRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA----- 183 (452)
Q Consensus 111 ~v~~l~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 183 (452)
....|+|+|+ +..|+.+...+.|+.+|+.++..... .........+++++++.++++..+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-------------~~~~~~P~giavd~dG~lyVad~~~~~~~ 206 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-------------TTNIGQCADVNFTLNGDMVVVDDQSSDTN 206 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-------------CCCCSCEEEEEECTTCCEEEEECCSCTTS
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-------------ecCCCCccEEEECCCCCEEEEcCCCCccc
Confidence 4568999984 44566555548899999866543211 112345678999999997666542
Q ss_pred e-EEEEeCCCCCcc-eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE-eec--ccceEEEccCCC
Q 012994 184 Q-VDIWNHNRSQPI-NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI-MRT--KSNSISWNPMEP 258 (452)
Q Consensus 184 ~-i~i~d~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 258 (452)
. +..++...+... ..+. .......+++.|.++.++++-..++.|..+|..++.....+. ... ....++++|++.
T Consensus 207 ~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~ 285 (433)
T 4hw6_A 207 TGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD 285 (433)
T ss_dssp EEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS
T ss_pred ceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC
Confidence 1 333333221110 1111 234456788898544677676678889999987665422222 211 123599999999
Q ss_pred ceEEeecCCCeEEEEeCCCcccc---ceeeeC---------------cccceEEEEE---------cCCCCEEEEEeCCC
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEA---KCVHMG---------------HESAVMDIDY---------SPTGREFVTGSYDR 311 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~---------------~~~~v~~~~~---------s~~g~~l~s~~~dg 311 (452)
.++++-...+.|+.++....... .....+ .-.....+++ .++|.+.++-...+
T Consensus 286 ~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~ 365 (433)
T 4hw6_A 286 WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSH 365 (433)
T ss_dssp EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCC
Confidence 88888888999999886522110 011111 1123667999 77787777777788
Q ss_pred eEEEEECCCCceeeeeccC----------------CcCcEEEEEEc-CCCCEEEEeeCCCcEEEeecc
Q 012994 312 TIRIFQYNGGRSREIYHTK----------------RMQRVFCVKFS-CDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~~~~~----------------~~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.|+.++. ++......... .......|+++ ++|.++++=..++.|+.++++
T Consensus 366 ~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 366 TVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 8999985 45433222110 11347889999 677766666667788887654
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.71 E-value=1.6e-06 Score=71.52 Aligned_cols=191 Identities=6% Similarity=0.008 Sum_probs=135.0
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccccee
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCV 284 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 284 (452)
....+.|+. ..++.+.+.+|.|+.+|+.+++....+ ...........+.+..++++.-.++.+.+||..+.+....+
T Consensus 56 ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 446788873 478888889999999999999999988 66655444455677788888888999999999988776655
Q ss_pred eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC----cCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 285 HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR----MQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 285 ~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
.....+ ..++ +|++.|+.+..++.|.++|..+.+....+.... ...++.+.|. +|+..+..-.+..|.+.|
T Consensus 133 ~~~~eG--wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vID 207 (268)
T 3nok_A 133 RYSGEG--WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEID 207 (268)
T ss_dssp ECSSCC--CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEEC
T ss_pred eCCCce--eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEe
Confidence 443222 3344 577888877779999999999988776653321 1246778887 776555555678999999
Q ss_pred cccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 361 AKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
..+|+.+..+.......... ..........++|++.|....++
T Consensus 208 p~TG~V~~~Idl~~L~~~~~----~~~~~~~~vlNGIA~dp~~~rlf 250 (268)
T 3nok_A 208 PATGTVVGVIDASALTRAVA----GQVTNPEAVLNGIAVEPGSGRIF 250 (268)
T ss_dssp TTTCBEEEEEECHHHHHHHT----TTCCCTTCCEEEEEECTTTCCEE
T ss_pred CCCCcEEEEEECCCCccccc----ccccCcCCceEEEEEcCCCCEEE
Confidence 99999998887543211100 00112233558899988765544
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.70 E-value=0.0001 Score=64.31 Aligned_cols=226 Identities=10% Similarity=0.017 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE-ecCCe
Q 012994 89 GDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNSF 166 (452)
Q Consensus 89 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 166 (452)
..|+..|+.+.+....+. ......+++|++.+..|+.+ ..++.|..+++...... ........ .....
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~---------~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQAP 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSCC
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---------cccEEEEeCCCCCc
Confidence 569999998776655444 44568899999866555544 45688999998652100 01111111 11344
Q ss_pred eeeeecCCC-CeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC-CeEEEEEccCCCCceEE
Q 012994 167 WAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKV 242 (452)
Q Consensus 167 ~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 242 (452)
..+++.+.+ .++++.. +.|.+++.........+.........+++.|.++.++++.... +.|..+++.... ...+
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~ 158 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL 158 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE
Confidence 677887644 4444433 5799999875443333333345678999999775666665443 788888875432 2222
Q ss_pred Ee--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC--cccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 243 IM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG--HESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 243 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
.. -...+.+++.+++..++++-...+.|..+|...... ..+... .......+++. .+.++++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 21 234678999999999899988899999999875322 222221 22345677775 3555566666788999998
Q ss_pred CCCceeeee
Q 012994 319 NGGRSREIY 327 (452)
Q Consensus 319 ~~~~~~~~~ 327 (452)
.+++....+
T Consensus 237 ~~g~~~~~i 245 (316)
T 1ijq_A 237 LTGSDVNLL 245 (316)
T ss_dssp TTCCCCEEE
T ss_pred CCCcceEEE
Confidence 777655444
No 269
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=9e-05 Score=73.56 Aligned_cols=284 Identities=10% Similarity=0.074 Sum_probs=167.3
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee--------------cCCCCeeEEEEccCCCeEEEEeCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS--------------GHQGAVRGLTVSTDGRILVSCGTDC 131 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~--------------~h~~~v~~l~~~~~~~~l~s~~~dg 131 (452)
...|.++...++| .|..|+..+-|.++|..++....... .....|.++...++|. |..|+.++
T Consensus 257 ~~~i~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLKDN--KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGG 333 (781)
T ss_dssp CCCEEEEEECTTS--EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSS
T ss_pred CceEEEEEECCCC--CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCC
Confidence 3569999998886 45667765678899987665322111 1345799999988875 56677677
Q ss_pred cEEEEeCCCCCCCCCCCCCC-CCCCCeeEEEecCCeeeeeecCCCCeEEEe-CCeEEEEeCCCCCcceec---ccCCCce
Q 012994 132 TVKLWNVPVATLTDSDDSTD-NSSEPLAVYVWKNSFWAVDHQWEGDLFATA-GAQVDIWNHNRSQPINSF---QWGTDTV 206 (452)
Q Consensus 132 ~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~---~~~~~~i 206 (452)
-|..++.............. .... ......+.++....++.+.+.. ++.+..|+..++...... ......|
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNES----SLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSS----CCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBE
T ss_pred eEEEeCCCCCcceeeccCccccccC----CCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcce
Confidence 78899876554321110000 0000 0123457788888888877766 567888887654322111 1234678
Q ss_pred EEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe----ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc
Q 012994 207 ISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM----RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK 282 (452)
Q Consensus 207 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 282 (452)
.++...+++ . |..|+.++.|..+|..+++.. .+.. ...+.++...+++ .+.+++. +.+..+|..+.....
T Consensus 410 ~~i~~d~~g-~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 410 LCSLKDSEG-N-LWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp EEEEECTTS-C-EEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSSSSCCE
T ss_pred EEEEECCCC-C-EEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCCCeEEe
Confidence 899888766 4 445776677888987655321 1111 1223344444433 3444555 568888876533221
Q ss_pred eeeeCc-----ccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec--cCCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 283 CVHMGH-----ESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH--TKRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 283 ~~~~~~-----~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
..... ...|.++...++|.+.+ |+.++.+..||..+++...... ......|.++...++|.+.++ +.+|.
T Consensus 484 -~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Gl 560 (781)
T 3v9f_A 484 -HYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-TGEGL 560 (781)
T ss_dssp -EECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-ETTEE
T ss_pred -cccCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-ECCCc
Confidence 11111 35789999999887655 4443447889987765433221 112356899999999886654 44665
Q ss_pred EEEeeccccc
Q 012994 356 LRLWKAKASE 365 (452)
Q Consensus 356 i~iw~~~~~~ 365 (452)
|..||..+++
T Consensus 561 v~~~d~~~~~ 570 (781)
T 3v9f_A 561 VCFPSARNFD 570 (781)
T ss_dssp EEESCTTTCC
T ss_pred eEEECCCCCc
Confidence 5888876654
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=1.2e-05 Score=73.26 Aligned_cols=236 Identities=11% Similarity=0.102 Sum_probs=140.9
Q ss_pred CeeEEEEcc-CCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeCC-----
Q 012994 111 AVRGLTVST-DGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAGA----- 183 (452)
Q Consensus 111 ~v~~l~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----- 183 (452)
....|+++| ++..|+.+...+.|..+|+..+.. ............+++++++. ++++..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-------------~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-------------STVYSGLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-------------EEEECCCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-------------EEEecCCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 356889997 455666666657888999865432 11222334567899999999 4444431
Q ss_pred -eEEEEeCCCCCcc--eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee--cccceEEEccCCC
Q 012994 184 -QVDIWNHNRSQPI--NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR--TKSNSISWNPMEP 258 (452)
Q Consensus 184 -~i~i~d~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 258 (452)
.+..++. .+... ..+.. ......++++|+++.++++-..++.|..+|............. .....++++|++.
T Consensus 205 ~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 205 PNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSS
T ss_pred ceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCC
Confidence 2333333 22222 22221 3345678899955477777777889999998765432222222 2367899999999
Q ss_pred ceEEeecCCCeEEEEeCCCccc-c--ceeeeCc---------------ccceE-EEEEc--------CCCCEEEEEeCCC
Q 012994 259 MNFTAANEDCNCYSYDSRKLDE-A--KCVHMGH---------------ESAVM-DIDYS--------PTGREFVTGSYDR 311 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~-~--~~~~~~~---------------~~~v~-~~~~s--------~~g~~l~s~~~dg 311 (452)
.++++....+.|+.++...... . .....+. -.... .++.. ++|.+.++=...+
T Consensus 283 ~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~ 362 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENH 362 (430)
T ss_dssp EEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGT
T ss_pred EEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCc
Confidence 8888888899999987653210 0 0111110 11123 45553 3466666656677
Q ss_pred eEEEEECCCCceeeeecc------C----------CcCcEEEEEEcCC-CCEEEEeeCCCcEEEeecc
Q 012994 312 TIRIFQYNGGRSREIYHT------K----------RMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~~~~------~----------~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 362 (452)
.|+.++. ++........ + .......++++|+ +.++++-..++.|+.++++
T Consensus 363 ~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 363 CIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8998884 4544333211 0 0125889999994 6666665566778877653
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.00011 Score=72.93 Aligned_cols=284 Identities=10% Similarity=0.085 Sum_probs=169.3
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee-------cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS-------GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
..|.++...+++ . |..|+.++-|..||..+++...... .....|.++...+++.+.+ |+.+ -+.+||..
T Consensus 163 ~~i~~i~~d~~g-~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~ 238 (781)
T 3v9f_A 163 EQTWTATEAEDG-K-LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNAN 238 (781)
T ss_dssp CCEEEEEEEETT-E-EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETT
T ss_pred cceEEEEECCCC-C-EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCC
Confidence 468888887775 4 5556666568899987765432111 1135689998888876544 4555 58889987
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceec--------------ccCCC
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSF--------------QWGTD 204 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~--------------~~~~~ 204 (452)
++........... ........+.++....+|.+.+... +.+.++|..+....... .....
T Consensus 239 ~~~~~~~~~~~~~-----~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 239 TETFTNFHNNPGN-----IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp TTEEEC----------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred CCcEEEEEcCCCc-----cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence 6543321110000 0011245678888888888877766 67899998765432211 12345
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEE----------eecccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVI----------MRTKSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
.|.++...+++ . |..|+.++-|..|+........... ....+.++...+++ .+.+|+.++-+..+|
T Consensus 314 ~v~~i~~D~~g-~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 314 SARYIFQDSFN-N-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFE 389 (781)
T ss_dssp CEEEEEECSSC-C-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEE
T ss_pred eEEEEEEeCCC-C-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEE
Confidence 78999988876 3 5567767778899876544222111 01223344444433 456666666788888
Q ss_pred CCCcccccee--eeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeec-cCCcCcEEEEEEcCCCCEEEEee
Q 012994 275 SRKLDEAKCV--HMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYH-TKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 275 ~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
..+....... .......|.++...++|.+.+ |+.++.+..+|..+++...... ......|.++...++|.+.+ |+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt 467 (781)
T 3v9f_A 390 NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GT 467 (781)
T ss_dssp TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EE
T ss_pred CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EE
Confidence 7643211110 012345689999888876554 6666779999988776543322 12235799999988887555 44
Q ss_pred CCCcEEEeecccccc
Q 012994 352 DDTNLRLWKAKASEQ 366 (452)
Q Consensus 352 ~dg~i~iw~~~~~~~ 366 (452)
. +-|..|+..+++.
T Consensus 468 ~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 468 H-AGVFVIDLASKKV 481 (781)
T ss_dssp T-TEEEEEESSSSSC
T ss_pred C-CceEEEeCCCCeE
Confidence 4 4588888776543
No 272
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.66 E-value=7.1e-06 Score=80.77 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=111.8
Q ss_pred cEEEEEeC-CCCcceEEEe-eCCC----cEEEEeCCCC-ceEEE-eecCCCCeeEEEEccCCCeEEEEeCC-----CcEE
Q 012994 68 GISCMAKN-PNYLKGFFSG-SMDG----DIRLWDIANR-RTVCQ-YSGHQGAVRGLTVSTDGRILVSCGTD-----CTVK 134 (452)
Q Consensus 68 ~V~~~~~~-~~~~~~l~tg-~~dg----~i~iwd~~~~-~~~~~-~~~h~~~v~~l~~~~~~~~l~s~~~d-----g~v~ 134 (452)
.+...+|| ||| ++||-+ +.+| .|+++|+.++ +.+.. +. .....++|+||++.|+....| ..|.
T Consensus 175 ~~~~~~~S~PDG-~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPEH-DLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTTT-CEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCCC-CEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67889999 999 766643 3333 4999999988 63211 21 123568999999888877665 2577
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCeeEEE--ecCCeeeeeecCCCCeEEEeC-----CeEEEEeCCCCC-cc--eec-ccCC
Q 012994 135 LWNVPVATLTDSDDSTDNSSEPLAVYV--WKNSFWAVDHQWEGDLFATAG-----AQVDIWNHNRSQ-PI--NSF-QWGT 203 (452)
Q Consensus 135 iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~i~i~d~~~~~-~~--~~~-~~~~ 203 (452)
++++.++.. ....+.. .......+.++++|+.++... ..+.++|+.++. .. ..+ ....
T Consensus 251 ~~~lgt~~~-----------~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 251 RHVMGKLQS-----------EDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp EEETTSCGG-----------GCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred EEECCCCch-----------hcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 777765421 1112221 112345678999999877653 258889998763 22 333 3334
Q ss_pred CceEEEEECCCCCcEEEEEecC----CeEEEEEccCCCCceE-EE-eecccceEEEccCCCceEEeecCCCe--EEEEeC
Q 012994 204 DTVISVRFNPAEPNVLATTASD----RSITLYDLRMSSPARK-VI-MRTKSNSISWNPMEPMNFTAANEDCN--CYSYDS 275 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~d~ 275 (452)
....++.|+. +..+++....+ ..|..+|+.+...... +. .........+.+.+..++++...++. ++++++
T Consensus 320 ~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 320 GVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred CceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence 4555565544 43555555544 3566667654222222 22 22222223455566777777777774 556664
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.65 E-value=3e-06 Score=69.32 Aligned_cols=193 Identities=6% Similarity=-0.006 Sum_probs=132.9
Q ss_pred CceEEEEECCCCCcEEEEEecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 204 DTVISVRFNPAEPNVLATTASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
.....+.|++ + .++.+.+.+| .|+.+|+.+++....+............+.+..++...-.++.+.+||..+....
T Consensus 21 ~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-G-HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-T-EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-C-EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4566888886 3 6777777654 8999999999999988877666555555567788888888999999999988776
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCC----cCcEEEEEEcCCCCEEEEeeCCCcEE
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKR----MQRVFCVKFSCDASYVISGSDDTNLR 357 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~ 357 (452)
..+..+..+ ..++ +++..|+.+..++.|.++|..+.+......... ...++.+.|. +|+..+..-.+..|.
T Consensus 99 ~ti~~~~~G--wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~ 173 (243)
T 3mbr_X 99 ARFRYPGEG--WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIA 173 (243)
T ss_dssp EEEECSSCC--CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred EEEeCCCCc--eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEE
Confidence 665544322 3444 567777777778999999999988766654321 1346777776 676555555677999
Q ss_pred EeecccccccccCChhhhhhhHHHHHHHHhhccCccccccccCCCCChhh
Q 012994 358 LWKAKASEQLGVLHPREQRKHAYHEAVKNRYKHLPEIKRIVRHRHLPKPI 407 (452)
Q Consensus 358 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 407 (452)
+.|..+|+.+..+.......... ..........++|++.|....++
T Consensus 174 vIDp~tG~V~~~idl~~l~~~~~----~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQALVPDAD----ALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EECTTTCBEEEEEECGGGSTTTT----SCCCTTSSCEEEEEEETTTTEEE
T ss_pred EEECCCCCEEEEEECCcCccccc----cccCCcCCceEEEEEcCCCCEEE
Confidence 99999999988876443211100 00001123457888888655443
No 274
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.64 E-value=0.00016 Score=65.20 Aligned_cols=247 Identities=10% Similarity=-0.010 Sum_probs=149.4
Q ss_pred eEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeE
Q 012994 81 GFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAV 159 (452)
Q Consensus 81 ~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 159 (452)
+|+.+. ...|+..++........+. ....+..|+|++.+..|+.+ ...+.|..+++...... ......
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---------~~~~~~ 153 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTV 153 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CCCEEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---------CcceEE
Confidence 344333 4689999987665544443 45678899999866655555 45678888888542100 011111
Q ss_pred EE-ecCCeeeeeecCC-CCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEec-CCeEEEEEcc
Q 012994 160 YV-WKNSFWAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTAS-DRSITLYDLR 234 (452)
Q Consensus 160 ~~-~~~~~~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 234 (452)
.. .......+++.+. +.++++.. +.|.+.+++.......+.........+++.|.++.++++-.. .+.|...++.
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d 233 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 233 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC
Confidence 11 2234567888874 44444443 468888887665444444444568899999977556555433 4788888886
Q ss_pred CCCCceEEEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-CcccceEEEEEcCCCCEEEEEeCCCe
Q 012994 235 MSSPARKVIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRT 312 (452)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~ 312 (452)
........... ...+.+++.+.+..++++-.....|..+|+........... .......++++. .+.++.+-...+.
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 54333222211 45678999999999899888889999999875433222211 122345567773 3445556566788
Q ss_pred EEEEECCCCceeeeeccCCcCcEEEEEE
Q 012994 313 IRIFQYNGGRSREIYHTKRMQRVFCVKF 340 (452)
Q Consensus 313 i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 340 (452)
|..+|..+|+....+.... ....++..
T Consensus 313 V~~~~~~~G~~~~~i~~~~-~~p~~i~v 339 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENL-LSPEDMVL 339 (400)
T ss_dssp EEEEESSSCCCCEEEECSC-SCEEEEEE
T ss_pred EEEEEcCCCCceEEEecCC-CCCceEEE
Confidence 9999977776665554332 23444433
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.63 E-value=8.5e-05 Score=61.72 Aligned_cols=212 Identities=8% Similarity=0.032 Sum_probs=133.5
Q ss_pred ccccccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEccCCCeEEEEeCCCcEEEEeCC
Q 012994 61 ALDGHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 61 ~l~~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~ 139 (452)
.+.|-.+.+..++|+|++..++++...++.|...|.. ++.+..+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999874566667888999999987 887777642 22567888999888776766567788888875
Q ss_pred CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 140 VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
.... ... +....+. +.. ...+.....++|.|.+..++
T Consensus 100 ~~~~-------------i~~-------------------------~~~~~~~----~~~-~~~N~g~EGLA~d~~~~~L~ 136 (255)
T 3qqz_A 100 PNSE-------------VKI-------------------------LKKIKIP----LQE-SPTNCGFEGLAYSRQDHTFW 136 (255)
T ss_dssp TTCC-------------EEE-------------------------EEEEECC----CSS-CCCSSCCEEEEEETTTTEEE
T ss_pred CCCe-------------eee-------------------------eeeeccc----ccc-ccccCCcceEEEeCCCCEEE
Confidence 4311 000 0000000 000 11244578899999885555
Q ss_pred EEEecCCeEEEEEccC---CCCceEEEe--------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-C
Q 012994 220 ATTASDRSITLYDLRM---SSPARKVIM--------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-G 287 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~ 287 (452)
+ +.......+|.+.. ...+..... -.....+++.|....+++.......+..+|..........+. +
T Consensus 137 v-a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g 215 (255)
T 3qqz_A 137 F-FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEMSLTKG 215 (255)
T ss_dssp E-EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECSTT
T ss_pred E-EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCc
Confidence 4 44444445555441 111222211 124578999999999999999999999999875422222222 1
Q ss_pred c------ccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 288 H------ESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 288 ~------~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
. ......|+|.++|++.++ +.-+.++.|.-
T Consensus 216 ~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 216 SRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp GGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred cCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 1 125688999999985555 66666666654
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.60 E-value=0.00015 Score=65.41 Aligned_cols=232 Identities=9% Similarity=0.018 Sum_probs=146.0
Q ss_pred eEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCC----Cc
Q 012994 123 ILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRS----QP 195 (452)
Q Consensus 123 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~----~~ 195 (452)
+|+.+. ...|+..++.... ..........+..++|++....+...+ +.|..+++... ..
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~-------------~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~ 150 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE-------------YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY 150 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS-------------CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCC
T ss_pred eeEEec-cceeEEEccCCcc-------------eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcc
Confidence 444443 3678888886542 222333445677899998655555443 56888888752 22
Q ss_pred ceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-ecccceEEEccCCCceEEeecC-CCeEEEE
Q 012994 196 INSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-RTKSNSISWNPMEPMNFTAANE-DCNCYSY 273 (452)
Q Consensus 196 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 273 (452)
...+.........+++.+.+.+++++-...+.|.+.++........+.. ...+..+++.|.+..++++-.. .+.|+..
T Consensus 151 ~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 151 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred eEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 3333334456788999886657777777788999999875543333321 2346788999988877777644 4788888
Q ss_pred eCCCccccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeecc-CCcCcEEEEEEcCCCCEEEEee
Q 012994 274 DSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHT-KRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 274 d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
++....... +....-.....|++++++..|+.+. ..+.|..+|+........... .......++++. .+.++++-.
T Consensus 231 ~~dG~~~~~-~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~ 308 (400)
T 3p5b_L 231 GLNGVDIYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDI 308 (400)
T ss_dssp ETTSCSCEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEES
T ss_pred eCCCCccEE-EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecC
Confidence 887543322 2223335678999998777766664 467899999976544333322 122456677774 344555666
Q ss_pred CCCcEEEeecccccccccC
Q 012994 352 DDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 352 ~dg~i~iw~~~~~~~~~~~ 370 (452)
..+.|..++..+|+.+..+
T Consensus 309 ~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSCSEEEEESSSCCCCEEE
T ss_pred CCCeEEEEEcCCCCceEEE
Confidence 6788999997777766544
No 277
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=4.1e-05 Score=70.04 Aligned_cols=254 Identities=10% Similarity=0.093 Sum_probs=149.8
Q ss_pred cEEEEEeCCC-CcceEEEeeCCCcEEEEeCCCCceEEEeecC---CCCeeEEEE-------ccCCCeEEEEeCCC-c---
Q 012994 68 GISCMAKNPN-YLKGFFSGSMDGDIRLWDIANRRTVCQYSGH---QGAVRGLTV-------STDGRILVSCGTDC-T--- 132 (452)
Q Consensus 68 ~V~~~~~~~~-~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~~~~~~l~s~~~dg-~--- 132 (452)
....|+|+|. +.+++++-...+.|++.|+.++.....+... ......|+| ++++++|+.+...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 4245555554577999998876655444321 235889999 99998676666544 2
Q ss_pred ---EEEEeCCC-CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEE
Q 012994 133 ---VKLWNVPV-ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 133 ---v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
|.+.+... +.... .. + ...+..+ .....
T Consensus 220 ~~~V~~i~r~~~G~~~~---------~~-----------------~------------------~~~v~~~----~~p~g 251 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDD---------RS-----------------D------------------IQLIAAY----KQCNG 251 (496)
T ss_dssp EEEEEEEECCTTSCCST---------TS-----------------C------------------EEEEEEE----SCCCC
T ss_pred CceEEEEecCCCCceee---------cc-----------------c------------------ceeeccC----CCceE
Confidence 44444222 10000 00 0 0001111 23346
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEcc-------CCCC-----------ceEE-Eee--cccceEEEccCCCceEEeecCC
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLR-------MSSP-----------ARKV-IMR--TKSNSISWNPMEPMNFTAANED 267 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~-----------~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
++++|+++.++++-..++.|..+|+. ++.. ...+ ... .....++++|++..++++-...
T Consensus 252 iavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~ 331 (496)
T 3kya_A 252 ATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINN 331 (496)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred EEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCC
Confidence 78899776788888888999999997 4443 1122 222 2346899999999888888888
Q ss_pred CeEEEEeCCCcccc---ceeeeCc---------------ccceE-EEEEc-------CCCCEEEEEeCCCeEEEEECCCC
Q 012994 268 CNCYSYDSRKLDEA---KCVHMGH---------------ESAVM-DIDYS-------PTGREFVTGSYDRTIRIFQYNGG 321 (452)
Q Consensus 268 ~~i~~~d~~~~~~~---~~~~~~~---------------~~~v~-~~~~s-------~~g~~l~s~~~dg~i~iwd~~~~ 321 (452)
..|+.++....... ...+.+. -.... .++.. ++|.++++=...+.|+.++. +|
T Consensus 332 h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G 410 (496)
T 3kya_A 332 HYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG 410 (496)
T ss_dssp TEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC
T ss_pred CEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CC
Confidence 99998765432110 0111111 01234 45554 46666666667888999984 45
Q ss_pred ceeeeecc------------C----------CcCcEEEEEEcCC-CCEEEEeeCCCcEEEeecccccccccC
Q 012994 322 RSREIYHT------------K----------RMQRVFCVKFSCD-ASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 322 ~~~~~~~~------------~----------~~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
......-. + .......|+++++ |.++++=..+..|+.++++........
T Consensus 411 ~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 411 IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 43322211 0 1134789999997 776676667789999998776555433
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.55 E-value=0.00022 Score=62.01 Aligned_cols=226 Identities=14% Similarity=0.037 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCc--eEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecC
Q 012994 88 DGDIRLWDIANRR--TVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN 164 (452)
Q Consensus 88 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (452)
...|+.+++.... ....+. ....+.+++|.+.+..|+ +-...+.|..+++..... ........-.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-----------~~~~~~~~l~ 79 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-----------VQNVVVSGLL 79 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-----------CCEEEEECCS
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-----------eEEEEcCCCC
Confidence 4679999987663 222222 223567899998555554 445567888888865421 1111222223
Q ss_pred CeeeeeecCCC-CeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEe-cCCeEEEEEccCCCCce
Q 012994 165 SFWAVDHQWEG-DLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTA-SDRSITLYDLRMSSPAR 240 (452)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 240 (452)
....+++.+.+ .++.+.. +.|.++++........+.........+++.|.++.++++-. ..+.|..+++..... .
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~ 158 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F 158 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E
Confidence 45677888644 4444433 47999998765433333344566789999987655555542 357888888764332 2
Q ss_pred EEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 012994 241 KVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQY 318 (452)
Q Consensus 241 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~ 318 (452)
.+.. -...+.+++++++..++++-...+.|..+|...... ..+..+.......+++.. +.++.+-...+.|..++.
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 2221 234578999999999999988899999999875332 222222344566777753 345555556788999998
Q ss_pred CCCceeeeec
Q 012994 319 NGGRSREIYH 328 (452)
Q Consensus 319 ~~~~~~~~~~ 328 (452)
.+++....+.
T Consensus 237 ~~G~~~~~i~ 246 (318)
T 3sov_A 237 YTGEGLREIH 246 (318)
T ss_dssp TTCCSCEEEE
T ss_pred CCCCceEEEe
Confidence 7776654443
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=0.00015 Score=66.14 Aligned_cols=236 Identities=12% Similarity=0.104 Sum_probs=135.9
Q ss_pred cEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeC-CC----cEEEEeCCCC
Q 012994 68 GISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGT-DC----TVKLWNVPVA 141 (452)
Q Consensus 68 ~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~-dg----~v~iwd~~~~ 141 (452)
....|+++| ++ ..|+.+...+.|+.+|+.++.... +.........|+|++++++|+.+.. ++ .+.+.+. .+
T Consensus 138 ~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457889998 44 556666555889999987765443 3334566889999999996666654 22 2333332 22
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeC--CeEEEEeCCCCCcceeccc-CCCceEEEEECCCCCc
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSFQW-GTDTVISVRFNPAEPN 217 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 217 (452)
.. ..............+++++ ++.++++.. +.|..++...+........ .......++|+|++..
T Consensus 215 ~~-----------~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 215 GF-----------KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp TS-----------CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred ce-----------eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 21 1111222344567788999 777777653 5799999886654222221 1245778999999844
Q ss_pred EEEEEecCCeEEEEEccCCC--C--ceEEEee-c---------------ccc-eEEEcc-------CCCceEEeecCCCe
Q 012994 218 VLATTASDRSITLYDLRMSS--P--ARKVIMR-T---------------KSN-SISWNP-------MEPMNFTAANEDCN 269 (452)
Q Consensus 218 ~l~~~~~dg~i~i~d~~~~~--~--~~~~~~~-~---------------~~~-~~~~~~-------~~~~~~~~~~~~~~ 269 (452)
++++-...+.|..++..... . ...+... . ... .++..+ ....++++-.....
T Consensus 284 lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~ 363 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC 363 (430)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE
T ss_pred EEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE
Confidence 66676778899998876421 1 1122111 0 011 222221 12344555555667
Q ss_pred EEEEeCCCccccceeee-------C----------cccceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 012994 270 CYSYDSRKLDEAKCVHM-------G----------HESAVMDIDYSP-TGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 270 i~~~d~~~~~~~~~~~~-------~----------~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~ 319 (452)
|+.++... ....... + .-.....++++| +|.++++-..++.|+.++++
T Consensus 364 I~~i~~~G--~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 364 IRILTPQG--RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEECTTS--EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCC--cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 77777432 1111111 0 012477899998 46666655567778877754
No 280
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.52 E-value=8e-06 Score=79.22 Aligned_cols=238 Identities=11% Similarity=0.085 Sum_probs=130.3
Q ss_pred EEEEcc-CCCeEEEEeCCC-----------cEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecC--CeeeeeecCCCCeEE
Q 012994 114 GLTVST-DGRILVSCGTDC-----------TVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKN--SFWAVDHQWEGDLFA 179 (452)
Q Consensus 114 ~l~~~~-~~~~l~s~~~dg-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 179 (452)
++++.+ +++.++.|+.+. .+.+||+.++... ......... ...+.++..++.+++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-----------~~~~~~~~~~~~~~~~~~~~~g~lyv 258 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-----------DRTVTVTKHDMFCPGISMDGNGQIVV 258 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-----------CCEEEECSCCCSSCEEEECTTSCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEE-----------eCcccCCCCCCccccccCCCCCCEEE
Confidence 566777 888888887543 5888998877542 111221111 222456678999999
Q ss_pred EeC---CeEEEEeCCCCCcceecccCC-CceEEEEECCCCCcEEEEEe-cC-----CeEEEEEccCCCCceEE-----Ee
Q 012994 180 TAG---AQVDIWNHNRSQPINSFQWGT-DTVISVRFNPAEPNVLATTA-SD-----RSITLYDLRMSSPARKV-----IM 244 (452)
Q Consensus 180 ~~~---~~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~-----~~ 244 (452)
.++ .++.+||..+.+-...-.... ..-.+++..+++ .+++.|+ .+ ..+.+||..+..-...- ..
T Consensus 259 ~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~ 337 (656)
T 1k3i_A 259 TGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM 337 (656)
T ss_dssp ECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGG
T ss_pred eCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccc
Confidence 987 369999987764332211111 112345555666 6888888 34 46899998765311100 00
Q ss_pred ecccceEEEccCCCceEEeecCC---------CeEEEEeCCCccccceeeeCcc---------cceEEEEEcC-CCCEEE
Q 012994 245 RTKSNSISWNPMEPMNFTAANED---------CNCYSYDSRKLDEAKCVHMGHE---------SAVMDIDYSP-TGREFV 305 (452)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~d~~~~~~~~~~~~~~~---------~~v~~~~~s~-~g~~l~ 305 (452)
........+.. +..+++.++.+ ..+..||.....-... ...+. ..-.++.|.. ++++++
T Consensus 338 ~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~-~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v 415 (656)
T 1k3i_A 338 LTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKS-AGKRQSNRGVAPDAMCGNAVMYDAVKGKILT 415 (656)
T ss_dssp CCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEE-EEECEETTEECCCCBTCEEEEEETTTTEEEE
T ss_pred ccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCcceeec-CCccccccccCCCCCCCceEeccCCCCeEEE
Confidence 00000111112 23334444333 3567777765431111 11111 1223444433 778888
Q ss_pred EEeCCC-----------eEEEEECCCCceeeee--ccCCcCcEEEEEEcCCCCEEEEeeCC-----------CcEEEeec
Q 012994 306 TGSYDR-----------TIRIFQYNGGRSREIY--HTKRMQRVFCVKFSCDASYVISGSDD-----------TNLRLWKA 361 (452)
Q Consensus 306 s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~d-----------g~i~iw~~ 361 (452)
.|+.++ .|.+||..+....... .......-.+++..|++++++.|+.+ ..+.+||.
T Consensus 416 ~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp 495 (656)
T 1k3i_A 416 FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVP 495 (656)
T ss_dssp ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEG
T ss_pred EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcC
Confidence 888543 6888888776544332 11211122345667899999998864 46889998
Q ss_pred cccc
Q 012994 362 KASE 365 (452)
Q Consensus 362 ~~~~ 365 (452)
.+.+
T Consensus 496 ~t~~ 499 (656)
T 1k3i_A 496 EQDT 499 (656)
T ss_dssp GGTE
T ss_pred CCCc
Confidence 7654
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.50 E-value=0.00022 Score=62.09 Aligned_cols=227 Identities=9% Similarity=-0.006 Sum_probs=140.8
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC---CeEEEEeCCCCCcc-eecccCCCc
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG---AQVDIWNHNRSQPI-NSFQWGTDT 205 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~-~~~~~~~~~ 205 (452)
...|+..++..... ..............++|.+....+...+ +.|..++....... ..+...-..
T Consensus 12 ~~~I~~i~l~~~~~-----------~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~ 80 (318)
T 3sov_A 12 RRDLRLVDATNGKE-----------NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLS 80 (318)
T ss_dssp EEEEEEEETTCTTS-----------CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSC
T ss_pred cCeEEEEECCCCce-----------EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCC
Confidence 35788888865421 1112222233556788887554444433 56888888766422 222222345
Q ss_pred eEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEE-EeecccceEEEccCCCceEEeec-CCCeEEEEeCCCccccce
Q 012994 206 VISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKV-IMRTKSNSISWNPMEPMNFTAAN-EDCNCYSYDSRKLDEAKC 283 (452)
Q Consensus 206 i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~ 283 (452)
...+++.+.+++++++-...+.|.++++......... ........+++.|.+..++.+-. ..+.|+.+++...... .
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-~ 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-I 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE-E
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE-E
Confidence 6778888766577777777889999998754332222 12234678889988777777763 4678888887643222 2
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.....-...+.|+++|++..|+.+. ..+.|..+|+......... .........+++.. +.++.+-...+.|..++..
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~ 237 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGSLPHPFALTLFE-DILYWTDWSTHSILACNKY 237 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSCCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCCCCCceEEEEeC-CEEEEEecCCCeEEEEECC
Confidence 2222334578999999766665554 5678999998754333333 22235677888863 3455565667889999987
Q ss_pred cccccccC
Q 012994 363 ASEQLGVL 370 (452)
Q Consensus 363 ~~~~~~~~ 370 (452)
+|+....+
T Consensus 238 ~G~~~~~i 245 (318)
T 3sov_A 238 TGEGLREI 245 (318)
T ss_dssp TCCSCEEE
T ss_pred CCCceEEE
Confidence 77765443
No 282
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.49 E-value=0.00044 Score=63.05 Aligned_cols=235 Identities=11% Similarity=0.077 Sum_probs=135.9
Q ss_pred cEEEEEeCCC--CcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCC----c-EEEEeCCC
Q 012994 68 GISCMAKNPN--YLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDC----T-VKLWNVPV 140 (452)
Q Consensus 68 ~V~~~~~~~~--~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg----~-v~iwd~~~ 140 (452)
....|+|+|+ + ..|+.+...+.|+.+|..++.... +........+|+|+++++ |+.+...+ . +...+...
T Consensus 140 ~P~gvavd~~s~~-g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNY-DDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTT-CEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCC-CEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 3 345555444899999987776554 333455689999999999 44444322 1 22222211
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeC--CeEEEEeCCCCCcceec-cc-CCCceEEEEECCCC
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAG--AQVDIWNHNRSQPINSF-QW-GTDTVISVRFNPAE 215 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~i~i~d~~~~~~~~~~-~~-~~~~i~~~~~~~~~ 215 (452)
+ . ..............+++++ ++.++++.. +.|..++..++.....+ .. .......++++|++
T Consensus 217 ~-~-----------~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 217 G-F-----------TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp T-T-----------CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred C-e-----------eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 1 0 1011222344556788888 777776654 46888888866652222 11 12233469999998
Q ss_pred CcEEEEEecCCeEEEEEccC--CCC--ceEEEee----------------cccceEEEc--------cCCCceEEeecCC
Q 012994 216 PNVLATTASDRSITLYDLRM--SSP--ARKVIMR----------------TKSNSISWN--------PMEPMNFTAANED 267 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~--~~~--~~~~~~~----------------~~~~~~~~~--------~~~~~~~~~~~~~ 267 (452)
..++++-...+.|..++... ... ...+... .....+++. .....++++-...
T Consensus 285 ~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n 364 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDS 364 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTT
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCC
Confidence 54666666778999988753 211 1122111 113346662 3344556666677
Q ss_pred CeEEEEeCCCccccceeee-------C----------cccceEEEEEc-CCCCEEEEEeCCCeEEEEECC
Q 012994 268 CNCYSYDSRKLDEAKCVHM-------G----------HESAVMDIDYS-PTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 268 ~~i~~~d~~~~~~~~~~~~-------~----------~~~~v~~~~~s-~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+.|+.++... ....... + .-.....|+++ ++|.++++=..++.|+.++++
T Consensus 365 ~~I~~~~~~G--~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 365 HTVRVLTPEG--RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TEEEEECTTS--EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEECCCC--CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 7888887532 1111110 0 11236788888 566666665667778877764
No 283
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.40 E-value=0.0007 Score=66.35 Aligned_cols=229 Identities=10% Similarity=-0.020 Sum_probs=137.3
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEE-ecCC
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYV-WKNS 165 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 165 (452)
...|+..++........+. ....+..|+|.+....|+ +-...+.|..+++...... ........ ....
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---------~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---------SSYDTVISRDIQA 472 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------CEEEECSSCSC
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---------cceeEEEecCCCC
Confidence 4568888887665444333 456788999998555554 4445678888888643110 01111111 2234
Q ss_pred eeeeeecCCCCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC-CeEEEEEccCCCCceE
Q 012994 166 FWAVDHQWEGDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARK 241 (452)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~ 241 (452)
...+++.+.+..|+..+ +.|.+.++........+.........|++.|.++.++++-... +.|...++........
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 56788887775554443 4799999876554444433445688999999865666555333 7788888864433222
Q ss_pred EEee-cccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 242 VIMR-TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
+... .....+++.+.+..++++-.....|..+++........... +......+|++.. +.++++-...+.|...|..
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCC
Confidence 2211 35678999998888888888888999999875443332221 1122345666643 2444444456788888877
Q ss_pred CCceeeee
Q 012994 320 GGRSREIY 327 (452)
Q Consensus 320 ~~~~~~~~ 327 (452)
+|..+..+
T Consensus 632 tG~~~~~l 639 (791)
T 3m0c_C 632 TGSDVNLL 639 (791)
T ss_dssp TCCCCEEE
T ss_pred CCcceEEe
Confidence 66544443
No 284
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.37 E-value=0.0007 Score=56.20 Aligned_cols=202 Identities=10% Similarity=0.130 Sum_probs=122.3
Q ss_pred EeecCCCCeeEEEEccCCCeEEE-EeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC
Q 012994 104 QYSGHQGAVRGLTVSTDGRILVS-CGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG 182 (452)
Q Consensus 104 ~~~~h~~~v~~l~~~~~~~~l~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (452)
.+.+-...+..++|+|++..|++ ...++.|...|.. ++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v--------------------------------------- 60 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL--------------------------------------- 60 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------------------
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------------------
Confidence 34455567999999997665554 5667777777764 321
Q ss_pred CeEEEEeCCCCCcceecc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce---EEEe-------ecccceE
Q 012994 183 AQVDIWNHNRSQPINSFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---KVIM-------RTKSNSI 251 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~-------~~~~~~~ 251 (452)
+..+. ......-.+++.+++ .++++.-.++.+.++++.....+. .... ......+
T Consensus 61 -------------~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGL 126 (255)
T 3qqz_A 61 -------------IRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGL 126 (255)
T ss_dssp -------------EEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEE
T ss_pred -------------EEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceE
Confidence 11111 112446677887766 555665567788888876655322 2211 1123689
Q ss_pred EEccCCCceEEeecCCC-eEEEEeCCCccccceeee-------CcccceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCc
Q 012994 252 SWNPMEPMNFTAANEDC-NCYSYDSRKLDEAKCVHM-------GHESAVMDIDYSP-TGREFVTGSYDRTIRIFQYNGGR 322 (452)
Q Consensus 252 ~~~~~~~~~~~~~~~~~-~i~~~d~~~~~~~~~~~~-------~~~~~v~~~~~s~-~g~~l~s~~~dg~i~iwd~~~~~ 322 (452)
+|.|.+..++++...+. .++.|+-........... .+...+.+++++| .+++++.......+.++|... +
T Consensus 127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g-~ 205 (255)
T 3qqz_A 127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG-E 205 (255)
T ss_dssp EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC-C
T ss_pred EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC-C
Confidence 99999888777766655 677776211111111110 1233578899999 456667777788899999774 4
Q ss_pred eeeeeccCC--------cCcEEEEEEcCCCCEEEEeeCCCcEEEeec
Q 012994 323 SREIYHTKR--------MQRVFCVKFSCDASYVISGSDDTNLRLWKA 361 (452)
Q Consensus 323 ~~~~~~~~~--------~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~ 361 (452)
.+..+.... ....-.|+|.++|++.+ .++.+.++++.-
T Consensus 206 ~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 206 VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 444332221 13578999999998555 476666666543
No 285
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.36 E-value=0.0013 Score=67.49 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=156.3
Q ss_pred cccEEEEEeCCCC-----cceEEEeeC-CCcEEEEeCCCCceEEEeec-CCCCeeEEEEcc--CCCeEEEEeCCCcEEEE
Q 012994 66 RDGISCMAKNPNY-----LKGFFSGSM-DGDIRLWDIANRRTVCQYSG-HQGAVRGLTVST--DGRILVSCGTDCTVKLW 136 (452)
Q Consensus 66 ~~~V~~~~~~~~~-----~~~l~tg~~-dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~~~l~s~~~dg~v~iw 136 (452)
.+.|.|+++.|.. ..+++.|.. |++|+|+++.+.+.+....- ......++.+.. ...+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999998642 268999996 99999999988766544321 122344444432 34578889999988766
Q ss_pred eCC--CCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCC--CeEEEeCCeEEEEeCCCCCcceecccCCCceE-EEEE
Q 012994 137 NVP--VATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEG--DLFATAGAQVDIWNHNRSQPINSFQWGTDTVI-SVRF 211 (452)
Q Consensus 137 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~ 211 (452)
.++ ++.+... ....-...++.-..+...+ .++++++....+|..+ ++.. ........+. ...|
T Consensus 633 ~~d~~tg~l~d~----------r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F 700 (1158)
T 3ei3_A 633 GLNIETGLLSDR----------KKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLV-FSNVNLKEVNYMCPL 700 (1158)
T ss_dssp EECTTTCCEEEE----------EEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEE-EEEBSSSCCCEEEEE
T ss_pred EEcCCCCccccc----------eeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceE-EeccChHHhceEecc
Confidence 554 3322111 0111111222222222222 3455555444444433 2211 1111122232 2334
Q ss_pred CCCC-CcEEEEEecCCeEEEEEccCCC--CceEEEeecccceEEEccCCCceEEeecC----------------------
Q 012994 212 NPAE-PNVLATTASDRSITLYDLRMSS--PARKVIMRTKSNSISWNPMEPMNFTAANE---------------------- 266 (452)
Q Consensus 212 ~~~~-~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 266 (452)
+... ++-++.. .++.++|..+.... ..+++.....+..++++|..+.+++..+.
T Consensus 701 ~se~~~~g~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1158)
T 3ei3_A 701 NSDGYPDSLALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQAL 779 (1158)
T ss_dssp CCSSSTTEEEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCS
T ss_pred CcccCCCcEEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhh
Confidence 3321 2334433 35569998875443 23445566777888888877765444321
Q ss_pred --------------------------CCeEEEEeCCCccccceeeeCcccceEEEE---EcCC-CCEEEEEe--------
Q 012994 267 --------------------------DCNCYSYDSRKLDEAKCVHMGHESAVMDID---YSPT-GREFVTGS-------- 308 (452)
Q Consensus 267 --------------------------~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~---~s~~-g~~l~s~~-------- 308 (452)
...++++|..+..............+.+++ |..+ ..+|+.|+
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~ 859 (1158)
T 3ei3_A 780 SSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEA 859 (1158)
T ss_dssp EEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCS
T ss_pred hhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCC
Confidence 123556666555543333333344455554 3322 46888876
Q ss_pred --CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 309 --YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 309 --~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
..|.|.+|++..++..........+++++++-- +|++|++. ...|++|++...+.+
T Consensus 860 ~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 860 EPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKEL 917 (1158)
T ss_dssp SCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCE
T ss_pred CCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceE
Confidence 358899999986655444444445789888754 45544443 468999999765533
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.33 E-value=0.002 Score=61.60 Aligned_cols=222 Identities=12% Similarity=0.027 Sum_probs=140.4
Q ss_pred CCCcEEEEeCCCCceEEEee-cCCCCeeEEEEccCCCeEEEE-eCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe-c
Q 012994 87 MDGDIRLWDIANRRTVCQYS-GHQGAVRGLTVSTDGRILVSC-GTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW-K 163 (452)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (452)
..+.|+..++.+......+. ..-..+..|+|++.+..|+.+ ..++.|..+++..... ...... .
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-------------~~v~~~g~ 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-------------EHVVEFGL 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------------EEEECSSC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-------------EEEEeCCC
Confidence 56789999998765433332 123468899999966655544 4578888888864321 111111 1
Q ss_pred CCeeeeeecCCCCeE-EEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE-ecCCeEEEEEccCCCCc
Q 012994 164 NSFWAVDHQWEGDLF-ATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT-ASDRSITLYDLRMSSPA 239 (452)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~ 239 (452)
.....+++.+.+..+ .+.. +.|.+.++........+...-.....+++.|..+.++++- +..+.|...++......
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 345577787665544 4433 4688888876543333323445678999999765555554 23567888887655543
Q ss_pred eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 012994 240 RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYN 319 (452)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~ 319 (452)
.....-..+..+++.+.+..++++-...+.|..+|+..... ...........++++.. +.++++-...+.|...|..
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~--~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~ 236 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR--EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT 236 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce--EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence 33333345678999999999999999999999999876443 22223333456777764 4444555457889888876
Q ss_pred CCcee
Q 012994 320 GGRSR 324 (452)
Q Consensus 320 ~~~~~ 324 (452)
+++..
T Consensus 237 tg~~~ 241 (628)
T 4a0p_A 237 SGQNR 241 (628)
T ss_dssp TCCSC
T ss_pred CCCce
Confidence 66543
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.29 E-value=1.2e-05 Score=78.03 Aligned_cols=205 Identities=11% Similarity=0.035 Sum_probs=125.4
Q ss_pred CeeeeeecCCCCeEEEeC---CeEEEEeCCC----CCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCC
Q 012994 165 SFWAVDHQWEGDLFATAG---AQVDIWNHNR----SQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSS 237 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~---~~i~i~d~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 237 (452)
....++|.+.+..|+..+ +.|..+++.. ......+.........+++.+.+++++++-...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 445778887666666554 5788888875 222222222223456788886665777776677889999986543
Q ss_pred CceEEEe-ecccceEEEccCCCceEEeecCC-CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEE-eCCCeEE
Q 012994 238 PARKVIM-RTKSNSISWNPMEPMNFTAANED-CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTG-SYDRTIR 314 (452)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~-~~dg~i~ 314 (452)
....+.. ......+++.|.+..++++.... +.|+.+++....... +..........|+|+|++..|+.+ +..+.|.
T Consensus 487 ~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 487 RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE-ESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE-EEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 2222211 23467888999888777776443 788887775432221 211223456789999976555544 4567899
Q ss_pred EEECCCCceeeeecc-CCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCC
Q 012994 315 IFQYNGGRSREIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLH 371 (452)
Q Consensus 315 iwd~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 371 (452)
.+++........... ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 999975433333221 11233456666554 455566667899999988888776664
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.24 E-value=0.002 Score=56.30 Aligned_cols=271 Identities=8% Similarity=0.025 Sum_probs=136.2
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEee----cCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYS----GHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
...+.+|.|.+.+ ..++ ++.+|.| +.....++.-.... .....+.+|.|.+ +. ++.++.+|.|.. ..+.+
T Consensus 35 ~~~~~~v~~~~~~-~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDRH-HGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSSS-CEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCCC-cEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 4579999998775 6666 4557765 33334443222221 1244688999976 34 444555664433 22222
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceec-ccCCCceEEEEECCCCCcEE
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSF-QWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l 219 (452)
+.-........ ....+..+.+.+++.+++.+. +.+. ...+.++.-... ......+..+.+.+++ .++
T Consensus 109 ~tW~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~g~v~-~S~DgG~tW~~~~~~~~~~~~~~~~~~~~-~~~ 177 (327)
T 2xbg_A 109 QSWSQIPLDPK---------LPGSPRLIKALGNGSAEMITNVGAIY-RTKDSGKNWQALVQEAIGVMRNLNRSPSG-EYV 177 (327)
T ss_dssp SSCEECCCCTT---------CSSCEEEEEEEETTEEEEEETTCCEE-EESSTTSSEEEEECSCCCCEEEEEECTTS-CEE
T ss_pred CCceECccccC---------CCCCeEEEEEECCCCEEEEeCCccEE-EEcCCCCCCEEeecCCCcceEEEEEcCCC-cEE
Confidence 21111110000 012234455555666666554 3222 222223322222 2234578889999876 555
Q ss_pred EEEecCCeEEE-EEccCCCCceEEE--eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee---CcccceE
Q 012994 220 ATTASDRSITL-YDLRMSSPARKVI--MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM---GHESAVM 293 (452)
Q Consensus 220 ~~~~~dg~i~i-~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~v~ 293 (452)
+++ .+|.+.. .|- .+..-..+. .......+.+.+++. +.+.+.++.++..+......-..... .+...+.
T Consensus 178 ~~g-~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~ 253 (327)
T 2xbg_A 178 AVS-SRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFL 253 (327)
T ss_dssp EEE-TTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred EEE-CCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceE
Confidence 555 4554443 331 122222222 123445666777664 33444567776653211111111111 1223588
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC--CcCcEEEEEEcCCCCEEEEeeCCCcEEEee
Q 012994 294 DIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWK 360 (452)
Q Consensus 294 ~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 360 (452)
++.+.+++.+++++. +|.| ++..+.|+.-...... ....+.++.|.+++. +++++.+|.|.-++
T Consensus 254 ~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 254 DLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred EEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 899998877766654 6766 4566656544333221 124678888876555 56667788776665
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.24 E-value=1.6e-05 Score=77.26 Aligned_cols=232 Identities=9% Similarity=0.008 Sum_probs=135.3
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCe
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSF 166 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (452)
.+.|+..++.+.+....+. ....+..|+|.+.+..|+.+. ..+.|..+++......... .. .........
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-------~~-~i~~~~~~P 455 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-------DT-VISRDIQAP 455 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCC-------CC-BCCSCC--C
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcce-------EE-EEeCCCCCc
Confidence 4578888887765544333 234577899998766666554 4578999998752100000 00 000001123
Q ss_pred eeeeecCC-CCeEEEeC--CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecC-CeEEEEEccCCCCceEE
Q 012994 167 WAVDHQWE-GDLFATAG--AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKV 242 (452)
Q Consensus 167 ~~~~~~~~-~~~~~~~~--~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~ 242 (452)
..+++.+. +.++++.. +.|.++++........+.........+++.|.++.++++-... +.|..+++.........
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~ 535 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 535 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE
Confidence 45667654 44444432 5688998876544333333334567889998775666554333 77888877543322111
Q ss_pred E-eecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeee-CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 243 I-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHM-GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
. .-...+.++++|++..++++-...+.|..+++........... ........|++..+ .++++....+.|..++..+
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 1 1234678999999999999988899999999865322221111 11223445666544 4555555678899999888
Q ss_pred Cceeeeecc
Q 012994 321 GRSREIYHT 329 (452)
Q Consensus 321 ~~~~~~~~~ 329 (452)
++.+..+..
T Consensus 615 G~~~~~i~~ 623 (699)
T 1n7d_A 615 GSDVNLLAE 623 (699)
T ss_dssp EEEEECCCT
T ss_pred CCceEEeec
Confidence 877665543
No 290
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.24 E-value=0.00043 Score=59.78 Aligned_cols=199 Identities=11% Similarity=0.230 Sum_probs=118.9
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccC----CC---eEEEEe-C--CCcEEEEeCCCCCCCCCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTD----GR---ILVSCG-T--DCTVKLWNVPVATLTDSDDS 149 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~---~l~s~~-~--dg~v~iwd~~~~~~~~~~~~ 149 (452)
.+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+ ++++.. . +++|.+|++....
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~------- 110 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN------- 110 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-------
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-------
Confidence 45666666788999999 8888888764 56777777663 22 223333 3 5789999763211
Q ss_pred CCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCC-CcceecccCCCceEEEEE--CCCCC-cEEEEEecC
Q 012994 150 TDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRS-QPINSFQWGTDTVISVRF--NPAEP-NVLATTASD 225 (452)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~--~~~~~-~~l~~~~~d 225 (452)
..+.. +... .++ ......+..+++ +|... .++++...+
T Consensus 111 -----~~l~~------------------------------i~~~~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~ 152 (355)
T 3amr_A 111 -----GTLQS------------------------------MTDPDHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKE 152 (355)
T ss_dssp -----CCEEE------------------------------CSCTTSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSS
T ss_pred -----Cceee------------------------------ccccccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCC
Confidence 00000 0000 000 000134455666 66443 367788889
Q ss_pred CeEEEEEcc-------CCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcc--c--cceee-eCcc-cce
Q 012994 226 RSITLYDLR-------MSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD--E--AKCVH-MGHE-SAV 292 (452)
Q Consensus 226 g~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~--~~~~~-~~~~-~~v 292 (452)
|.+..|++. +.+.++.+.....+..+...+....+++ +.++..|+.|+..... . ..... .++- ..+
T Consensus 153 G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv-~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDv 231 (355)
T 3amr_A 153 GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI-AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDI 231 (355)
T ss_dssp SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE-EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCE
T ss_pred CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE-ecccceEEEEeCCcCCCCCceEEEEecCCccccCc
Confidence 999999984 3345677777777778888777666444 4555568888865221 1 11111 1222 367
Q ss_pred EEEEE--cCCCC-EEEEEe-CCCeEEEEECC-CCceeeee
Q 012994 293 MDIDY--SPTGR-EFVTGS-YDRTIRIFQYN-GGRSREIY 327 (452)
Q Consensus 293 ~~~~~--s~~g~-~l~s~~-~dg~i~iwd~~-~~~~~~~~ 327 (452)
..|++ .++|+ +|++++ .++.+.+||.. +.+.+..+
T Consensus 232 EGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 232 EGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred ceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 88888 45555 666555 67799999997 55555555
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.23 E-value=0.0014 Score=57.99 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=44.5
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce--EEEee---cCCCCeeEEEEccC---CCeEEEEeC-C-----C
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT--VCQYS---GHQGAVRGLTVSTD---GRILVSCGT-D-----C 131 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~---~~~l~s~~~-d-----g 131 (452)
-..-..|+|.|+| +++ .+..+|.|.+++ +++. +..+. ........|+|+|+ +..|+.+.. + +
T Consensus 30 l~~P~~ia~~pdG-~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDG-GML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTS-CEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCC-eEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3456799999998 644 455679999998 4432 22121 12356889999998 555555443 2 4
Q ss_pred cEEEEeCC
Q 012994 132 TVKLWNVP 139 (452)
Q Consensus 132 ~v~iwd~~ 139 (452)
.|..|+..
T Consensus 106 ~v~r~~~~ 113 (352)
T 2ism_A 106 QVVRLRHL 113 (352)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 56666664
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.20 E-value=0.0015 Score=63.97 Aligned_cols=204 Identities=10% Similarity=-0.061 Sum_probs=122.8
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR----RTVCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPV 140 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~ 140 (452)
...+..|+|++....++++-...+.|+.+++... .....+.........|++.+.+..|+ +-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 4567889999865255556666788999988652 22333333445677899988665554 445578899999863
Q ss_pred CCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCC-eEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCC
Q 012994 141 ATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGD-LFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEP 216 (452)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 216 (452)
.. ..............+++.+.+. ++++.. +.|...++........+...-.....|++.+.++
T Consensus 503 ~~------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 503 VK------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSG 570 (791)
T ss_dssp SS------------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTT
T ss_pred Ce------------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCC
Confidence 31 1111111223467888988644 444442 3588888876554444443446788999998776
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeec-ccceEEEccCCCceEEeecCCCeEEEEeCCCcccc
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRT-KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA 281 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 281 (452)
.++++-...+.|..+|+........+.... ....+.+...+..++++-...+.|...+..+....
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence 666666667889999986554333332211 11223333345567777777788888776554433
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.17 E-value=0.0057 Score=58.45 Aligned_cols=294 Identities=10% Similarity=-0.012 Sum_probs=165.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
...+.|++++++..+.++=...+.|...|+..........+......+|++..+ ..+++-...+.|...|..+++....
T Consensus 171 ~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 171 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred CCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 456789999876344445455678999988654332222212222356777655 3444444567888888876654322
Q ss_pred CCCCCCCCCCee------------------------EEEec--CCeeeee-----ecCCC---------CeEEEeCCeEE
Q 012994 147 DDSTDNSSEPLA------------------------VYVWK--NSFWAVD-----HQWEG---------DLFATAGAQVD 186 (452)
Q Consensus 147 ~~~~~~~~~~~~------------------------~~~~~--~~~~~~~-----~~~~~---------~~~~~~~~~i~ 186 (452)
..........+. +.... ....|.+ ..+++ .++++..+.|+
T Consensus 250 i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~ 329 (619)
T 3s94_A 250 IHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLR 329 (619)
T ss_dssp CCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEE
T ss_pred EecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceE
Confidence 211110000010 11100 0111111 11121 13334445677
Q ss_pred EEeCCCCCcce-ecc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee-cccceEEEccCCCceEEe
Q 012994 187 IWNHNRSQPIN-SFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR-TKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 187 i~d~~~~~~~~-~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 263 (452)
..++....... .+. ..-..+.+++|.+.++.++++-...+.|..+++........+... ..+..+++...+..++++
T Consensus 330 ~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~t 409 (619)
T 3s94_A 330 RISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWT 409 (619)
T ss_dssp EEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE
T ss_pred EEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEE
Confidence 77776543211 111 123457889999876567767667888999988765433222212 356688888888888888
Q ss_pred ecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCceeeeeccCCcCcEEEEEEc
Q 012994 264 ANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSY--DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 264 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 341 (452)
-...+.|.+.++..... ..+....-....+|++.|...+|+.+.. .+.|...++..... ..+........+.++++
T Consensus 410 D~~~~~I~v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD 487 (619)
T 3s94_A 410 DTGTDRIEVTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALD 487 (619)
T ss_dssp ETTTTEEEEEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEE
T ss_pred eCCCCcEEEEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEc
Confidence 88889999998875432 2222233456789999996444444432 36777777764333 23323334678999999
Q ss_pred CCCCEEEEee-CCCcEEEeeccc
Q 012994 342 CDASYVISGS-DDTNLRLWKAKA 363 (452)
Q Consensus 342 ~~~~~l~s~~-~dg~i~iw~~~~ 363 (452)
+++..|+.+. ..+.|...++..
T Consensus 488 ~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 488 YDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEESSS
T ss_pred ccCCEEEEEECCCCEEEEEecCC
Confidence 8777666654 446788887743
No 294
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.13 E-value=0.0013 Score=57.38 Aligned_cols=190 Identities=7% Similarity=-0.048 Sum_probs=111.0
Q ss_pred ccEEEEEeCC-CCcceEEEeeCCCcEEEEeCCCCceEEEeec-----CCCCeeEEEEcc-CCCeEEEEeC----------
Q 012994 67 DGISCMAKNP-NYLKGFFSGSMDGDIRLWDIANRRTVCQYSG-----HQGAVRGLTVST-DGRILVSCGT---------- 129 (452)
Q Consensus 67 ~~V~~~~~~~-~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~-~~~~l~s~~~---------- 129 (452)
..+.++++.+ ++ + |+.+...+.|..+|..++.. ..+.. .......+++.+ +|++.++-..
T Consensus 80 ~~p~gi~~~~~~g-~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 80 GRTYDISYNLQNN-Q-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CCEEEEEEETTTT-E-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCCceEEEcCCCC-c-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence 3578999998 54 4 55554455688898775543 22211 113478899999 8876665432
Q ss_pred -------CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEe-C--CeEEEEeCCCCCc--ce
Q 012994 130 -------DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATA-G--AQVDIWNHNRSQP--IN 197 (452)
Q Consensus 130 -------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~i~i~d~~~~~~--~~ 197 (452)
+|.|..||..++.. ............+++++++..+..+ . +.|.+|++..... ..
T Consensus 157 ~~~~~~~~g~v~~~d~~~~~~-------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~ 223 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPSTKET-------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE 223 (322)
T ss_dssp HHHHTCCCEEEEEEETTTTEE-------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE
T ss_pred ehcccCCCceEEEEeCCCCEE-------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc
Confidence 36677787654421 1111122345678999999855444 3 5799999875321 11
Q ss_pred ecccCCCceEEEEECCCCCcEEEEEec----------CCeEEEEEccCCCCceEEEeec-----ccceEEEccCCCceEE
Q 012994 198 SFQWGTDTVISVRFNPAEPNVLATTAS----------DRSITLYDLRMSSPARKVIMRT-----KSNSISWNPMEPMNFT 262 (452)
Q Consensus 198 ~~~~~~~~i~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 262 (452)
.+....+ ...+++.+++ +++++... .+.|..+|.. ++.+..+.... .+..+.+ .+..+++
T Consensus 224 ~~~~~~g-P~gi~~d~~G-~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v 298 (322)
T 2fp8_A 224 VLVKIPN-PGNIKRNADG-HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE--HDGLLYI 298 (322)
T ss_dssp EEEECSS-EEEEEECTTS-CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE--ETTEEEE
T ss_pred eEEeCCC-CCCeEECCCC-CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE--eCCEEEE
Confidence 2211223 7789999988 56666544 4668888864 45454444332 2334443 2445566
Q ss_pred eecCCCeEEEEeCCC
Q 012994 263 AANEDCNCYSYDSRK 277 (452)
Q Consensus 263 ~~~~~~~i~~~d~~~ 277 (452)
+....+.|..+++..
T Consensus 299 ~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 299 GTLFHGSVGILVYDK 313 (322)
T ss_dssp ECSSCSEEEEEEC--
T ss_pred eecCCCceEEEeccc
Confidence 666677777777653
No 295
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.13 E-value=0.00015 Score=71.29 Aligned_cols=158 Identities=13% Similarity=0.183 Sum_probs=96.1
Q ss_pred ceEEEEEC-CCCCcEEEEEecCC----eEEEEEccCC-CCceEEEeecccceEEEccCCCceEEeecCC----CeEEEEe
Q 012994 205 TVISVRFN-PAEPNVLATTASDR----SITLYDLRMS-SPARKVIMRTKSNSISWNPMEPMNFTAANED----CNCYSYD 274 (452)
Q Consensus 205 ~i~~~~~~-~~~~~~l~~~~~dg----~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~d 274 (452)
.+....|+ |++..++++...+| .|+++|+.++ ..+... .......+.|+|++..++.+.... ..|+.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 57788999 99954444544444 4999999988 532211 122246789999998877775432 3688888
Q ss_pred CCCcccc-ceeee-CcccceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCc-ee--eeeccCCcCcEEEEEEcCCCCE
Q 012994 275 SRKLDEA-KCVHM-GHESAVMDIDYSPTGREFVTGSY---DRTIRIFQYNGGR-SR--EIYHTKRMQRVFCVKFSCDASY 346 (452)
Q Consensus 275 ~~~~~~~-~~~~~-~~~~~v~~~~~s~~g~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~~~~~~~v~~~~~s~~~~~ 346 (452)
+.+.... ..++. ........+.|||||++|+..+. ...|+++|+.++. .. ..+.........++.|+.++.+
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 8765322 22222 22334668899999999886653 4468899998763 12 2222223345566666554444
Q ss_pred EEEeeCC--C--cEEEeeccc
Q 012994 347 VISGSDD--T--NLRLWKAKA 363 (452)
Q Consensus 347 l~s~~~d--g--~i~iw~~~~ 363 (452)
++....+ + .|..+++.+
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTS
T ss_pred EEEeCCCCCCCcEEEEEcCCC
Confidence 5554443 3 456666654
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.11 E-value=0.00081 Score=58.10 Aligned_cols=185 Identities=8% Similarity=0.160 Sum_probs=115.5
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCC----CCc--EEEEEe-c--CCeEEEEEcc-CCCCceEE-----Eee--
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPA----EPN--VLATTA-S--DRSITLYDLR-MSSPARKV-----IMR-- 245 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~----~~~--~l~~~~-~--dg~i~i~d~~-~~~~~~~~-----~~~-- 245 (452)
+.+.+||+ .++.+..+.. +.++.+..-|. +.. ++++.. . +++|.+|++. ....+..+ ...
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA 126 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence 57999999 8888888764 55666666552 111 233333 3 5789999874 22223333 111
Q ss_pred -cccceEEE--ccCC-CceEEeecCCCeEEEEeCCCc------cccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEE
Q 012994 246 -TKSNSISW--NPME-PMNFTAANEDCNCYSYDSRKL------DEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRI 315 (452)
Q Consensus 246 -~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~i 315 (452)
..+..+++ +|.. ...+++...++.+..|++... .+....+ .-.+.+..+...+....|+.+-.+..|..
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGRLYIAEEDEAIWK 205 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCeEEEecccceEEE
Confidence 34455666 6654 456777778899999887431 1112222 22346788899998889999999877777
Q ss_pred EECC-----CCceeeeeccCC-cCcEEEEEE--cCCCC-EEEEee-CCCcEEEeecc-cccccccCC
Q 012994 316 FQYN-----GGRSREIYHTKR-MQRVFCVKF--SCDAS-YVISGS-DDTNLRLWKAK-ASEQLGVLH 371 (452)
Q Consensus 316 wd~~-----~~~~~~~~~~~~-~~~v~~~~~--s~~~~-~l~s~~-~dg~i~iw~~~-~~~~~~~~~ 371 (452)
++.+ ++..+......+ ...+..|++ .++++ ||++++ .+..+.+||.. +.+.+..|.
T Consensus 206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 7755 233443332222 236888888 45555 666555 57799999996 666776664
No 297
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.07 E-value=0.0039 Score=52.90 Aligned_cols=259 Identities=9% Similarity=0.091 Sum_probs=156.4
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCee
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
+.+|.|.|+.++..+..-.- .--+.-.+|..+.||--. ..++.++|+++.. .+........+.
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~-------------klks~~~~e~Vv 110 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKAHTMTDDVT 110 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTE-------------EEEEEECSSCEE
T ss_pred CCEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhh-------------hhcceecCCccE
Confidence 34788999988655432211 112334588877776655 5789999998763 333344445555
Q ss_pred eeeecCCCCeEEEeCCeEEEEeCCC-CCcceecccC----CCceEEEEECCCCCcEEEEEe------cCCeEEEEEccCC
Q 012994 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTA------SDRSITLYDLRMS 236 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~ 236 (452)
--.|-.+..+-...+..|..|++.. ..+.+.+..| ...|..-..+++...++++|- -.|.+.+|..+..
T Consensus 111 fWkWis~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 111 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp EEEECSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred EEEecCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc
Confidence 5566666667777778899999974 4566555543 456788888888855555553 2367788876543
Q ss_pred CCceEEEeecccce-EEEccCC----CceEEeec---CCCeEEEEeCCCc--ccc------ceeee---CcccceEEEEE
Q 012994 237 SPARKVIMRTKSNS-ISWNPME----PMNFTAAN---EDCNCYSYDSRKL--DEA------KCVHM---GHESAVMDIDY 297 (452)
Q Consensus 237 ~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~---~~~~i~~~d~~~~--~~~------~~~~~---~~~~~v~~~~~ 297 (452)
.. . ...+...+ ..+-.++ ..+++.+. ..+.+++.++... ... ...+. ...+-..++..
T Consensus 191 ~s--Q-~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 191 VS--Q-PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp EE--E-EECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred cc--c-eeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 21 1 11121111 1121111 22333322 2358888887543 111 01111 12334557788
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
|+.-..+..-+.-|.|++||++++.++..-.-.. ..|...+-+....=++.....|.|.--.++..+.+
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~nrIS~-d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEEeccCC-CceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 8877788888999999999999999877655444 55665555555445666668888877777766554
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.05 E-value=0.0044 Score=53.07 Aligned_cols=203 Identities=12% Similarity=0.147 Sum_probs=117.5
Q ss_pred ccccEEEEEeCCCCcceEEEee-CCCcEEEEeCCCCceEEE-eec----CC--CCeeEEEE---ccCCCeEEEEeC----
Q 012994 65 HRDGISCMAKNPNYLKGFFSGS-MDGDIRLWDIANRRTVCQ-YSG----HQ--GAVRGLTV---STDGRILVSCGT---- 129 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~-~dg~i~iwd~~~~~~~~~-~~~----h~--~~v~~l~~---~~~~~~l~s~~~---- 129 (452)
..---.+++|++.. ..|..++ ..|+|..||...+..... +.+ .. ..+..|.| .|+++++++...
T Consensus 11 ~~~yPE~~~wd~~~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTR-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTT-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCC-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 33344578898865 4555555 799999999875543322 222 11 13578999 578766664331
Q ss_pred ---------CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecc
Q 012994 130 ---------DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQ 200 (452)
Q Consensus 130 ---------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~ 200 (452)
+..|..+|+.-. .+++.+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~-------------------------------------------------~tg~~~~~~d 120 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLS-------------------------------------------------ENSKPVWSVN 120 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCC-------------------------------------------------TTCCCSEEEE
T ss_pred cccccccCCCCEEEEEcCCcC-------------------------------------------------CCCCEEEEec
Confidence 334444444300 0333332221
Q ss_pred c-------------CCCceEEEEECCCCCcEEEEEecC-CeEEEEEccCCCCceEEEee-------cccceEEEccCCCc
Q 012994 201 W-------------GTDTVISVRFNPAEPNVLATTASD-RSITLYDLRMSSPARKVIMR-------TKSNSISWNPMEPM 259 (452)
Q Consensus 201 ~-------------~~~~i~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 259 (452)
. .......++..++| +..++++.. +.|..++.... ....+... ...+.+++.|++..
T Consensus 121 L~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~ 198 (334)
T 2p9w_A 121 FEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNK 198 (334)
T ss_dssp SHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTE
T ss_pred CccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCE
Confidence 0 12357889999988 777788877 77777776544 22222221 12468999999988
Q ss_pred eEEeecCCCeEEEEeCCCccccceeee--Cc---ccceEEE-EEcCCCCE-EEEEeCCCeEEEEECCC
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVHM--GH---ESAVMDI-DYSPTGRE-FVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~---~~~v~~~-~~s~~g~~-l~s~~~dg~i~iwd~~~ 320 (452)
+++..+ .+.+..+|+........... +. -.....| ..-.+|+. |++.+..+.+.+.+...
T Consensus 199 Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 199 LIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred EEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 888877 99999999885332101111 21 1223333 33347777 55555667666666554
No 299
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.00 E-value=0.012 Score=56.25 Aligned_cols=293 Identities=8% Similarity=-0.004 Sum_probs=166.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTD 145 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 145 (452)
-...+.|++++++..+.++=...+.|...|+..... ..+.........|++.. +..+++-...+.|...|..++....
T Consensus 165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~ 242 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRT 242 (628)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCE
T ss_pred CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceE
Confidence 346778999997624444445567899999865433 33433344556788764 3444444457888888876654322
Q ss_pred CCCCCCCCCC-----------------------CeeEEEec-CCeeeee-----ecCCC--------CeEEEeCCeEEEE
Q 012994 146 SDDSTDNSSE-----------------------PLAVYVWK-NSFWAVD-----HQWEG--------DLFATAGAQVDIW 188 (452)
Q Consensus 146 ~~~~~~~~~~-----------------------~~~~~~~~-~~~~~~~-----~~~~~--------~~~~~~~~~i~i~ 188 (452)
.......... ...+.... ....|.+ ..+++ .++++....|+-.
T Consensus 243 ~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i 322 (628)
T 4a0p_A 243 IIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRM 322 (628)
T ss_dssp EEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEE
T ss_pred EEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEE
Confidence 1111000000 00111111 1111111 11222 1233333456555
Q ss_pred eCCCCCc-ceeccc-CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------ecccceEEEccCCCc
Q 012994 189 NHNRSQP-INSFQW-GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------RTKSNSISWNPMEPM 259 (452)
Q Consensus 189 d~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 259 (452)
.+..... ...+.. .-..+..++|.+.++.++.+-...+.|..+++........+.. ...+..+++...++.
T Consensus 323 ~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~n 402 (628)
T 4a0p_A 323 VIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 402 (628)
T ss_dssp CCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTE
T ss_pred ecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCe
Confidence 5543221 111111 2345788999987766666666678898888765443222211 224678899988888
Q ss_pred eEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcC-CCCEEEEEeCCC--eEEEEECCCCceeeeeccCCcCcEE
Q 012994 260 NFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSP-TGREFVTGSYDR--TIRIFQYNGGRSREIYHTKRMQRVF 336 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~ 336 (452)
++++....+.|.+.++..... ..+.........+|++.| .|.++.+-.... .|...++..... ..+........+
T Consensus 403 LY~td~~~~~I~v~~~~G~~~-~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~~~l~~P~ 480 (628)
T 4a0p_A 403 IYWTCEATNVINVTRLDGRSV-GVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFFSGLSKPI 480 (628)
T ss_dssp EEEEETTTTEEEEEETTSCEE-EEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEECSSCSCEE
T ss_pred EEEEcCCCCEEEEEECCCCeE-EEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEeccCCCcc
Confidence 888988899999998865322 223333445688999999 555555543333 577777764333 333233346789
Q ss_pred EEEEcCCCCEEEEeeC-CCcEEEeecc
Q 012994 337 CVKFSCDASYVISGSD-DTNLRLWKAK 362 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~-dg~i~iw~~~ 362 (452)
.+++++++..|+.+.. .+.|...++.
T Consensus 481 gla~D~~~~~LYw~D~~~~~I~~~~~d 507 (628)
T 4a0p_A 481 ALALDSRLGKLFWADSDLRRIESSDLS 507 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9999998777766544 5778888874
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.98 E-value=0.013 Score=55.95 Aligned_cols=199 Identities=8% Similarity=-0.051 Sum_probs=114.2
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCce-EEEeecCCCCeeEEEEccCCCeEE-EEeCCCcEEEEeCCCCCC
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRT-VCQYSGHQGAVRGLTVSTDGRILV-SCGTDCTVKLWNVPVATL 143 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~~~l~-s~~~dg~v~iwd~~~~~~ 143 (452)
-.....|+|++.+..++++=...+.|..+++..... ...+...-.....|++.+.+..|+ +-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 345789999987624444444567899999865532 223333335788999998555454 445678999999864321
Q ss_pred CCCCCCCCCCCCCeeEEEecCCeeeeeecCC-CCeEEEeC---CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEE
Q 012994 144 TDSDDSTDNSSEPLAVYVWKNSFWAVDHQWE-GDLFATAG---AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVL 219 (452)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 219 (452)
. ......-.....+++.|. |.++.+.- +.|...+++...........-.....+++.+.++.++
T Consensus 119 ~------------~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 119 K------------VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp E------------EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEE
T ss_pred E------------EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEE
Confidence 1 001012234567888876 44555542 3566666664433333333345678999999876777
Q ss_pred EEEecCCeEEEEEccCCCCceEEE-eecccceEEEccCCCceEEeecCCCeEEEEeCCCc
Q 012994 220 ATTASDRSITLYDLRMSSPARKVI-MRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKL 278 (452)
Q Consensus 220 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 278 (452)
++-...+.|..+|+.......... .......+++..+ .++++-...+.|...|..+.
T Consensus 187 ~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 187 WADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp EEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEESSSC
T ss_pred EEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCC
Confidence 776777889999886543222211 1122344555433 56666666777777776543
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.89 E-value=0.012 Score=52.21 Aligned_cols=260 Identities=10% Similarity=0.091 Sum_probs=158.4
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCee
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
+.+|.|.|+.++..+..-.- .--+.-.+|..+.||-=. ..++.++|+++.. .+........+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~-------------klks~~~~e~Vv 109 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS-------------KMKAHTMTDDVT 109 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE-------------EEEEEECSSCCC
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhh-------------hhcceecCCCce
Confidence 44788999988655432221 122345678777776655 6799999998763 333333344454
Q ss_pred eeeecCCCCeEEEeCCeEEEEeCCC-CCcceecccC----CCceEEEEECCCCCcEEEEEe------cCCeEEEEEccCC
Q 012994 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTA------SDRSITLYDLRMS 236 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~ 236 (452)
--.|-.+..+-.+.+..|..|++.. ..+...+..| ...|..-..+++...++++|- -.|.+.+|..+..
T Consensus 110 fWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp EEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred EEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc
Confidence 5555556666666778899999974 4566555543 456888888888855555543 2467888887544
Q ss_pred CCceEEEeecccce-EEEccCC----CceEEeecC---CCeEEEEeCCCc--cc------cceeee---CcccceEEEEE
Q 012994 237 SPARKVIMRTKSNS-ISWNPME----PMNFTAANE---DCNCYSYDSRKL--DE------AKCVHM---GHESAVMDIDY 297 (452)
Q Consensus 237 ~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~---~~~i~~~d~~~~--~~------~~~~~~---~~~~~v~~~~~ 297 (452)
... . ..+...+ ..+-.++ ..+++.+.. .+.+++.++... .. ...++. ...+-..++..
T Consensus 190 ~sQ--~-ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 190 VSQ--P-IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp CEE--E-ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred ccc--h-heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 321 1 1111111 1121111 123333322 378888887543 10 001111 12334567888
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 298 SPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 298 s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
|+.-..+..-+.-|.|++||++++.++..-.-.. ..|...+-+....=++.....|.|.--.++....+.
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~-~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccC-CceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 8887888889999999999999999877665444 566666666555556667788888777777666553
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.82 E-value=0.015 Score=51.30 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred cceEEEEEc-------CCCCEEEEEeCCCeEEEEECCCC-cee--eeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 290 SAVMDIDYS-------PTGREFVTGSYDRTIRIFQYNGG-RSR--EIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 290 ~~v~~~~~s-------~~g~~l~s~~~dg~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
.....++|. .+|.++++.-..+.|...++... ... ..+.......+..+++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 356788883 57777777767788888888753 221 222222235789999999998766654
No 303
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.79 E-value=0.0077 Score=52.74 Aligned_cols=133 Identities=15% Similarity=0.122 Sum_probs=81.5
Q ss_pred CeEEEEeCCCCCc----ceeccc-CCCceEEEEECCCCCcEEEEEe-----------------cCCeEEEEEccCCCCce
Q 012994 183 AQVDIWNHNRSQP----INSFQW-GTDTVISVRFNPAEPNVLATTA-----------------SDRSITLYDLRMSSPAR 240 (452)
Q Consensus 183 ~~i~i~d~~~~~~----~~~~~~-~~~~i~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~ 240 (452)
..+.+|++..... +..+.+ .-...+++.+.+++ .++++.. ..|.|..+|. ++...
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~ 215 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRV 215 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEE
T ss_pred CeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEE
Confidence 4577777655422 222222 23467889999987 5665543 1245555554 33222
Q ss_pred EEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc--ceeeeCcccceEEEEEcC-CCCEEEEEeCC-CeEEEE
Q 012994 241 KVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--KCVHMGHESAVMDIDYSP-TGREFVTGSYD-RTIRIF 316 (452)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d-g~i~iw 316 (452)
....-...+.++|+|++..++++-+..+.|+.|+....... ...+ ......-.+++.+ +|++.+++..+ +.|..|
T Consensus 216 ~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~ 294 (355)
T 3sre_A 216 VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFY 294 (355)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSC
T ss_pred eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEE
Confidence 22333567899999999999999999999999998632211 1122 2235677899999 59887766544 334444
Q ss_pred ECC
Q 012994 317 QYN 319 (452)
Q Consensus 317 d~~ 319 (452)
+..
T Consensus 295 ~P~ 297 (355)
T 3sre_A 295 DAE 297 (355)
T ss_dssp CTT
T ss_pred CCC
Confidence 433
No 304
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.78 E-value=0.014 Score=51.49 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=44.5
Q ss_pred cceEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCceeee--eccCCcCcEEEEEEcCCCCEEEEee-CCCcEEEe
Q 012994 290 SAVMDIDYSP-------TGREFVTGSYDRTIRIFQYNGGRSREI--YHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLW 359 (452)
Q Consensus 290 ~~v~~~~~s~-------~g~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw 359 (452)
..+..++|.. +|.++++.-..+.|...++..+..... +.......+..+++.|||.++++.. .+| +||
T Consensus 271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ 348 (353)
T 2g8s_A 271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELL 348 (353)
T ss_dssp CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEE
T ss_pred cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEE
Confidence 4567788863 577777776778888888876543322 2122225799999999998666433 344 445
Q ss_pred ec
Q 012994 360 KA 361 (452)
Q Consensus 360 ~~ 361 (452)
.+
T Consensus 349 ri 350 (353)
T 2g8s_A 349 KV 350 (353)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.77 E-value=0.0025 Score=54.56 Aligned_cols=159 Identities=10% Similarity=0.115 Sum_probs=104.2
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec---------ccceEEE---ccCCCceEEeec-----
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT---------KSNSISW---NPMEPMNFTAAN----- 265 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~~----- 265 (452)
.....++.|.+....++++.-..|.|..||...+..... .... ....+.+ .|.+.. +++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL-~vv~~~~~af 89 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRL-FAVMKNAKSF 89 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEE-EEEEEETTTT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcE-EEEEcccccc
Confidence 344567889887655665555799999999875543322 2221 2357788 577444 44333
Q ss_pred --------CCCeEEEEeCC---Cccccceeee-C-----------cccceEEEEEcCCCCEEEEEeCC-CeEEEEECCCC
Q 012994 266 --------EDCNCYSYDSR---KLDEAKCVHM-G-----------HESAVMDIDYSPTGREFVTGSYD-RTIRIFQYNGG 321 (452)
Q Consensus 266 --------~~~~i~~~d~~---~~~~~~~~~~-~-----------~~~~v~~~~~s~~g~~l~s~~~d-g~i~iwd~~~~ 321 (452)
.+..+..||+. +......... . -.....+++..++|+..++++.- +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26779999988 4444332221 1 11358899999999999999888 88777776644
Q ss_pred ceeeeec----cCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 322 RSREIYH----TKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 322 ~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
....... .......+.++++|+|..|++...+|.|..+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 2222221 11123477999999999888877799999999873
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.73 E-value=0.0076 Score=51.88 Aligned_cols=142 Identities=11% Similarity=0.081 Sum_probs=68.6
Q ss_pred cEEEEEecC-----CeEEEEEccCCCCceEEEeeccc--ceEEEccCCCceEEeecCC-----CeEEEEeCCCccccce-
Q 012994 217 NVLATTASD-----RSITLYDLRMSSPARKVIMRTKS--NSISWNPMEPMNFTAANED-----CNCYSYDSRKLDEAKC- 283 (452)
Q Consensus 217 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~- 283 (452)
.+++.|+.+ ..+.+||+.+..-...-...... ..++. . +..+++.|+.+ ..+..||..+..=...
T Consensus 114 ~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 191 (301)
T 2vpj_A 114 MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-A-SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVT 191 (301)
T ss_dssp EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-E-CCEEEEECCCCCCcccceEEEEeCCCCcEEeCC
Confidence 555565543 35777777654422221111111 12222 1 34455555433 4578888765321110
Q ss_pred eeeCcccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC----
Q 012994 284 VHMGHESAVMDIDYSPTGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD---- 353 (452)
Q Consensus 284 ~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d---- 353 (452)
...........+.+ ++++++.|+.+ ..+.+||+.+.+-......... .....+.+ ++++++.|+.+
T Consensus 192 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 192 PMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSL 267 (301)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSB
T ss_pred CCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcc
Confidence 01111111122222 66777787764 4689999988765433211110 11222233 67777777765
Q ss_pred -CcEEEeecccc
Q 012994 354 -TNLRLWKAKAS 364 (452)
Q Consensus 354 -g~i~iw~~~~~ 364 (452)
..+.+||..+.
T Consensus 268 ~~~v~~yd~~~~ 279 (301)
T 2vpj_A 268 LSSIECYDPIID 279 (301)
T ss_dssp EEEEEEEETTTT
T ss_pred cccEEEEcCCCC
Confidence 35677887654
No 307
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=0.0011 Score=60.66 Aligned_cols=157 Identities=11% Similarity=0.105 Sum_probs=96.5
Q ss_pred ceEEEEECCC-CCcEEEEEecCCeEEEEEccCCCCceEEEeec----ccceEEE-------ccCCCceEEeecCCC----
Q 012994 205 TVISVRFNPA-EPNVLATTASDRSITLYDLRMSSPARKVIMRT----KSNSISW-------NPMEPMNFTAANEDC---- 268 (452)
Q Consensus 205 ~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~~~~---- 268 (452)
....|+|.|. +.+++++....+.|++.|+............. ....++| .+++..++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 5678999984 54566555555778888887665544332221 3578889 999987777765542
Q ss_pred --eEEEEeCCCccccc-----eeeeCcccceEEEEEcCC-CCEEEEEeCCCeEEEEECC-------CCce----------
Q 012994 269 --NCYSYDSRKLDEAK-----CVHMGHESAVMDIDYSPT-GREFVTGSYDRTIRIFQYN-------GGRS---------- 323 (452)
Q Consensus 269 --~i~~~d~~~~~~~~-----~~~~~~~~~v~~~~~s~~-g~~l~s~~~dg~i~iwd~~-------~~~~---------- 323 (452)
.+..++........ .... -......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 36677643311111 1221 1224567889994 5555566678889999987 5543
Q ss_pred -e-eeeccCCcCcEEEEEEcCCCCEEEE-eeCCCcEEEeecc
Q 012994 324 -R-EIYHTKRMQRVFCVKFSCDASYVIS-GSDDTNLRLWKAK 362 (452)
Q Consensus 324 -~-~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~ 362 (452)
. ..+..........++|+|+|++|+. -+....|+.++..
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1 1222233345789999999996444 4556778886543
No 308
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.63 E-value=0.0082 Score=52.56 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=100.0
Q ss_pred cEEEEEeCCCCcceEEEe------------eCCCcEEEEeCCCC--ceE-EEeec-----CCCCeeEEEEcc--CCC-eE
Q 012994 68 GISCMAKNPNYLKGFFSG------------SMDGDIRLWDIANR--RTV-CQYSG-----HQGAVRGLTVST--DGR-IL 124 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg------------~~dg~i~iwd~~~~--~~~-~~~~~-----h~~~v~~l~~~~--~~~-~l 124 (452)
....++..|+| ..++++ ..+|.|.++|..+. +.. ..+.+ .......|.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45566778876 444443 16899999998742 221 12222 223567777766 343 45
Q ss_pred EEEeC---CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEe--cCCeeeeeecCCCCeEEEeC-----------------
Q 012994 125 VSCGT---DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVW--KNSFWAVDHQWEGDLFATAG----------------- 182 (452)
Q Consensus 125 ~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----------------- 182 (452)
+.+.. +.+|.+|++...... ......... -...+.+.+.++|.++++..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~---------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKS---------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTE---------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCeEEEEEEECCCCE---------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 55432 467888887654210 001111111 23456788888888777654
Q ss_pred CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCce---EEEeecccceEEEccC-CC
Q 012994 183 AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPAR---KVIMRTKSNSISWNPM-EP 258 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~-~~ 258 (452)
..-.+|.+..++ +..+...-...+.++|+|++..++++-+..+.|..||+.....+. .+........++..++ +.
T Consensus 201 ~~g~vyr~d~~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 201 AWSFVTYYSPND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 279 (355)
T ss_dssp CCEEEEEECTTC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred CccEEEEEECCe-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence 112344333332 333333345678999999996666666778999999987433222 2222334455666663 44
Q ss_pred c
Q 012994 259 M 259 (452)
Q Consensus 259 ~ 259 (452)
.
T Consensus 280 l 280 (355)
T 3sre_A 280 L 280 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.58 E-value=0.012 Score=50.69 Aligned_cols=64 Identities=9% Similarity=0.259 Sum_probs=38.0
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCCC-----cEEEeeccccc
Q 012994 300 TGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDT-----NLRLWKAKASE 365 (452)
Q Consensus 300 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 365 (452)
++.+++.|+.+ ..+.+||+.+.+-......... .....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 67778888764 3689999987754433211110 11122222 677777787654 47888887653
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.57 E-value=0.012 Score=52.18 Aligned_cols=163 Identities=13% Similarity=0.204 Sum_probs=99.5
Q ss_pred ecCCCCeEEEeCCeEEEEeCCCCCcceecccC----CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEeec
Q 012994 171 HQWEGDLFATAGAQVDIWNHNRSQPINSFQWG----TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMRT 246 (452)
Q Consensus 171 ~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 246 (452)
...+..+++..++.|+.-++......+.+... ...|..+..+|+| ++||..+ +..|.|..+..+.....-. .
T Consensus 29 ~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~~~-~- 104 (452)
T 3pbp_A 29 SQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVEDV-S- 104 (452)
T ss_dssp ETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCCCH-H-
T ss_pred EcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCccc-c-
Confidence 34444566666678888888765555555543 2367889999998 6776664 5689998886332111000 0
Q ss_pred ccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCce
Q 012994 247 KSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPT---GREFVTGSYDRTIRIFQYNGGRS 323 (452)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~s~~~dg~i~iwd~~~~~~ 323 (452)
....-.++.|.+.... .....+|..+.|+|- |..|++-..|+.|++||+.....
T Consensus 105 -----------------~~~~~q~~ty~l~~~~------~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~ 161 (452)
T 3pbp_A 105 -----------------IQDAFQIFHYSIDEEE------VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE 161 (452)
T ss_dssp -----------------HHHTTEEEEEEGGGCC--------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS
T ss_pred -----------------cccccceeEEEcCCcc------cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC
Confidence 0011123334443211 123578999999994 56799999999999999986322
Q ss_pred ee-eec--------cCCcCcEEEEEEcCCCCEEEEee--CCCcEEEee
Q 012994 324 RE-IYH--------TKRMQRVFCVKFSCDASYVISGS--DDTNLRLWK 360 (452)
Q Consensus 324 ~~-~~~--------~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~iw~ 360 (452)
.. .+. ......|.+++|.+++-.|...+ .+|.|+-.-
T Consensus 162 ~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 162 KPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp CCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 11 111 11125688999999887666644 777776543
No 311
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.53 E-value=0.032 Score=57.27 Aligned_cols=263 Identities=10% Similarity=0.073 Sum_probs=145.6
Q ss_pred CCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCee
Q 012994 88 DGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFW 167 (452)
Q Consensus 88 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (452)
..+|.|.|+.++..+..-. -.--+.-.+|..+.||.=+ ..++.|+|+++.....+... ...|.
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-------------~e~Vv 109 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-------------TDDVT 109 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-------------CCCce
Confidence 4478899988765442211 1122334577766666554 67999999987754333222 22233
Q ss_pred eeeecCCCCeEEEeCCeEEEEeCCC-CCcceecccC----CCceEEEEECCCCCcEEEEEe------cCCeEEEEEccCC
Q 012994 168 AVDHQWEGDLFATAGAQVDIWNHNR-SQPINSFQWG----TDTVISVRFNPAEPNVLATTA------SDRSITLYDLRMS 236 (452)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~i~d~~~-~~~~~~~~~~----~~~i~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~ 236 (452)
--.|-....+-.+.+..|..|++.. ..|...+..| ...|..-..+++...++++|- -.|.+.+|.....
T Consensus 110 fWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 110 FWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred EEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence 3344445556666667899999974 4555555544 456777788888855555543 3478888887644
Q ss_pred CCceEEEeecccceEEE--ccCCCceEEeec---CCCeEEEEeCCCc--cc------cceeeeC---cccceEEEEEcCC
Q 012994 237 SPARKVIMRTKSNSISW--NPMEPMNFTAAN---EDCNCYSYDSRKL--DE------AKCVHMG---HESAVMDIDYSPT 300 (452)
Q Consensus 237 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~i~~~d~~~~--~~------~~~~~~~---~~~~v~~~~~s~~ 300 (452)
.....-.+......+.. .+....+++.+. ..+.+++.++... .. ...+... ..+-..++..|+.
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 32111000000011111 111122333222 2367888877543 10 0011111 1233456777887
Q ss_pred CCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 301 GREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 301 g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
-..+..-+.-|.|.+||+.++.++..-.-.. .+|...+-+....-++.....|.|.--.+.....+.
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~-~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~ 336 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISG-ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccC-CceEEeccCCCCCceEEEcCCceEEEEEEccchhhh
Confidence 7788888899999999999998765543332 445544444433334445567776666666555543
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.52 E-value=0.015 Score=50.14 Aligned_cols=64 Identities=6% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeeccCC-cCcEEEEEEcCCCCEEEEeeCC-----CcEEEeeccccc
Q 012994 300 TGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKR-MQRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 365 (452)
Q Consensus 300 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 365 (452)
++++++.|+.+ ..+.+||+.+.+-........ .....++.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 66777777654 358899998865433321111 112223333 67777888754 457888876643
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.44 E-value=0.044 Score=46.66 Aligned_cols=218 Identities=9% Similarity=0.077 Sum_probs=137.4
Q ss_pred CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEE
Q 012994 131 CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISV 209 (452)
Q Consensus 131 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~ 209 (452)
..|.|.|+..+.. +. ..+-..-+.-.+|..++++... ..+.++|+++.+.+..+... ..|.--
T Consensus 49 ~~VvIiDl~n~~~------------~~---Rrpi~AdsAIMnP~~~ViALrag~~LQiFnletK~klks~~~~-e~VvfW 112 (365)
T 2xzh_A 49 AQVVIIDMNDPSN------------PI---RRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFW 112 (365)
T ss_dssp EEEEEEETTSTTS------------CE---EEECCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCEEEE
T ss_pred CEEEEEECCCCCC------------cc---ccccccceeeeCCCccEEEEecCCeEEEechHHhhhhcceecC-CccEEE
Confidence 4788889876532 11 1111222344577888777765 57999999999999888764 577777
Q ss_pred EECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEee-----cccceEEEccCCCceEEeecC------CCeEEEEeCCC
Q 012994 210 RFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMR-----TKSNSISWNPMEPMNFTAANE------DCNCYSYDSRK 277 (452)
Q Consensus 210 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------~~~i~~~d~~~ 277 (452)
.|-... .|+..+ +..|+-|++... .+...+... .++.....+++...++++|-. .|.+.+|....
T Consensus 113 kWis~~--~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er 189 (365)
T 2xzh_A 113 KWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 189 (365)
T ss_dssp EECSSS--EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EecCCC--eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc
Confidence 887644 444443 467999999753 344444432 233455667788887777642 36677887764
Q ss_pred ccccceeeeCcccceEEEEEcCC---CCEEEEEeC---CCeEEEEECCCC---ce------eeee--ccCCcCcEEEEEE
Q 012994 278 LDEAKCVHMGHESAVMDIDYSPT---GREFVTGSY---DRTIRIFQYNGG---RS------REIY--HTKRMQRVFCVKF 340 (452)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~---g~~l~s~~~---dg~i~iwd~~~~---~~------~~~~--~~~~~~~v~~~~~ 340 (452)
...+...+|......+.+.-+ .++++.+.. .+.++|-++... .. ...+ .....+-..++..
T Consensus 190 --~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqv 267 (365)
T 2xzh_A 190 --KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 267 (365)
T ss_dssp --TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEE
T ss_pred --cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEe
Confidence 344556678665544433211 123443332 268999998543 11 1111 1112344668888
Q ss_pred cCCCCEEEEeeCCCcEEEeeccccccccc
Q 012994 341 SCDASYVISGSDDTNLRLWKAKASEQLGV 369 (452)
Q Consensus 341 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 369 (452)
|+.-..++.-+.-|.|++||+++|.++..
T Consensus 268 s~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 268 SEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 98888888899999999999999999753
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.40 E-value=0.16 Score=52.24 Aligned_cols=174 Identities=11% Similarity=0.148 Sum_probs=102.6
Q ss_pred eEEEEeCCCCCcceecccC-CCceEEEE---ECCCCCcEEEEEe----------cCCeEEEEEccCCCCc--eEEEeecc
Q 012994 184 QVDIWNHNRSQPINSFQWG-TDTVISVR---FNPAEPNVLATTA----------SDRSITLYDLRMSSPA--RKVIMRTK 247 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~-~~~i~~~~---~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~--~~~~~~~~ 247 (452)
.++++|..+.+.+..+... ...+.+++ |..+...++++|. ..|.|.+|++...+.. ......+.
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 3677777777766555442 23444444 3333346787776 3588999999743222 22223344
Q ss_pred cceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEE--ECCCCceee
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIF--QYNGGRSRE 325 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iw--d~~~~~~~~ 325 (452)
+.+++ +-++.++++. ...+++|++....... ....+...|..+.....|++++.|+.-..|.++ +...++...
T Consensus 888 v~al~--~~~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 888 VYSMV--EFNGKLLASI--NSTVRLYEWTTEKELR-TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp EEEEE--EETTEEEEEE--TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CEEEe--eeCCEEEEEc--CCEEEEEECCCCceEE-EEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 44444 3344444443 4678888876543222 111111123333333467889999877777765 444555555
Q ss_pred eeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 326 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 326 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
........+++++.|-.++ .++.+..+|+|.+.....
T Consensus 963 ~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 IARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred EEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 5555555789999997554 677789999999998765
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.28 E-value=0.028 Score=48.51 Aligned_cols=104 Identities=9% Similarity=0.078 Sum_probs=52.5
Q ss_pred CCceEEeecCC-----CeEEEEeCCCccccc-eeeeCcccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceee
Q 012994 257 EPMNFTAANED-----CNCYSYDSRKLDEAK-CVHMGHESAVMDIDYSPTGREFVTGSYD-----RTIRIFQYNGGRSRE 325 (452)
Q Consensus 257 ~~~~~~~~~~~-----~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~~~~~~ 325 (452)
+..+++.|+.+ ..+..||..+..=.. ............+.+ ++++++.|+.+ ..+.+||+.+.+-..
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 245 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF 245 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE
Confidence 34555555433 457888876432110 001111111122222 67777888764 458999998875443
Q ss_pred eeccCCc-CcEEEEEEcCCCCEEEEeeCC-----CcEEEeecccc
Q 012994 326 IYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKAS 364 (452)
Q Consensus 326 ~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 364 (452)
....... .....+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 246 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 246 VAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 3211110 11222222 67777777754 34677777654
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.22 E-value=0.1 Score=46.36 Aligned_cols=218 Identities=9% Similarity=0.073 Sum_probs=138.2
Q ss_pred CCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEE
Q 012994 130 DCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVIS 208 (452)
Q Consensus 130 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~ 208 (452)
+..|.|.|+..+.. + ...+-..-+.-.+|..++++.-. ..+.|+|+++...+..+... ..|.-
T Consensus 47 ~~~vvIiDl~~~~~------------~---~rrpi~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~Vvf 110 (494)
T 1bpo_A 47 QAQVVIIDMNDPSN------------P---IRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTF 110 (494)
T ss_dssp CCEEEEEETTSTTS------------C---EEEECCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCE
T ss_pred CCeEEEEECCCCCc------------c---eecccccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceE
Confidence 34788888876532 1 11112223445577777777765 57999999999998888764 45666
Q ss_pred EEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEee-----cccceEEEccCCCceEEeec------CCCeEEEEeCC
Q 012994 209 VRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIMR-----TKSNSISWNPMEPMNFTAAN------EDCNCYSYDSR 276 (452)
Q Consensus 209 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~~ 276 (452)
-.|-.. +.|+..+ +..|+-|++... .+...+... ..+.....+++...++++|- -.|.+.+|...
T Consensus 111 WkWis~--~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 111 WKWISL--NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp EEEEET--TEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred EEecCC--CeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 677654 3454443 568999999753 344444432 23345566788888877764 24677788776
Q ss_pred CccccceeeeCcccceEEEEEcCCC---CEEEEEeCC---CeEEEEECCCC---c------eeeee--ccCCcCcEEEEE
Q 012994 277 KLDEAKCVHMGHESAVMDIDYSPTG---REFVTGSYD---RTIRIFQYNGG---R------SREIY--HTKRMQRVFCVK 339 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~s~~~d---g~i~iwd~~~~---~------~~~~~--~~~~~~~v~~~~ 339 (452)
. ...+...+|......+.+..+. .+++.+... +.++|-++... . ....+ .....+-..++.
T Consensus 188 r--~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq 265 (494)
T 1bpo_A 188 R--KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (494)
T ss_dssp T--CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE
T ss_pred c--cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE
Confidence 4 3445666887666555443211 234444432 78999998543 1 11111 111234466889
Q ss_pred EcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 340 FSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 340 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
.|+.-..++.-+.-|.|++||++++.++.
T Consensus 266 vs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred ecccCCEEEEEecCceEEEEecccceeee
Confidence 99988889999999999999999998874
No 317
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.16 E-value=0.11 Score=45.28 Aligned_cols=235 Identities=7% Similarity=0.040 Sum_probs=115.8
Q ss_pred CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeC-CeEEE
Q 012994 109 QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAG-AQVDI 187 (452)
Q Consensus 109 ~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~i 187 (452)
...+.+|.|.+++..++ ++.+|.| +...+.++.=........ .....+..+.+.+ +..++.+. +.+.
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~--------~~~~~~~~i~~~~-~~~~~~g~~g~i~- 102 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLD--------HSDYRFNSVSFQG-NEGWIVGEPPIML- 102 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCS--------CCCCEEEEEEEET-TEEEEEEETTEEE-
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCC--------CCCccEEEEEecC-CeEEEEECCCeEE-
Confidence 45789999987776666 4566755 333333321000000000 0122455666665 44444443 3232
Q ss_pred EeCCCCCcceecc---cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe--ecccceEEEccCCCceEE
Q 012994 188 WNHNRSQPINSFQ---WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM--RTKSNSISWNPMEPMNFT 262 (452)
Q Consensus 188 ~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 262 (452)
...+.++.-.... .....+..+.+.+++ .+++++ .+|.|.. ....+..-..... ......+.+.+++. +++
T Consensus 103 ~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~ 178 (327)
T 2xbg_A 103 HTTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGE-YVA 178 (327)
T ss_dssp EESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSC-EEE
T ss_pred EECCCCCCceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCc-EEE
Confidence 2333333322222 123456777776554 455544 4564422 1122322222221 22345677777654 344
Q ss_pred eecCCCeEEEEeC--CCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC---CcCcEEE
Q 012994 263 AANEDCNCYSYDS--RKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK---RMQRVFC 337 (452)
Q Consensus 263 ~~~~~~~i~~~d~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~ 337 (452)
++......+..|. ..... ........+..+.+++++..++ ++.+|.+++.+...+..-...... ....+.+
T Consensus 179 ~g~~G~~~~S~d~gG~tW~~---~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 179 VSSRGSFYSTWEPGQTAWEP---HNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp EETTSSEEEEECTTCSSCEE---EECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred EECCCcEEEEeCCCCCceeE---CCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 4444433344443 22221 1223456788899999987665 445788877654334433222211 2235889
Q ss_pred EEEcCCCCEEEEeeCCCcEEEeeccccc
Q 012994 338 VKFSCDASYVISGSDDTNLRLWKAKASE 365 (452)
Q Consensus 338 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 365 (452)
+.+.+++.+++++. +|.| .+....|+
T Consensus 255 v~~~~~~~~~~~g~-~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 255 LAYRTPNEVWLAGG-AGAL-LCSQDGGQ 280 (327)
T ss_dssp EEESSSSCEEEEES-TTCE-EEESSTTS
T ss_pred EEecCCCEEEEEeC-CCeE-EEeCCCCc
Confidence 99998887766554 6666 33444443
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.09 E-value=0.14 Score=45.47 Aligned_cols=119 Identities=16% Similarity=0.242 Sum_probs=76.0
Q ss_pred CeeeeeecCCCCeEEEeC-CeEEEEeCCCCCc----------c--eeccc------CCCceEEEEECCCCC--cEEEEEe
Q 012994 165 SFWAVDHQWEGDLFATAG-AQVDIWNHNRSQP----------I--NSFQW------GTDTVISVRFNPAEP--NVLATTA 223 (452)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~-~~i~i~d~~~~~~----------~--~~~~~------~~~~i~~~~~~~~~~--~~l~~~~ 223 (452)
.+..+..+|+|.+++..+ .+|.|..+..+.. + +.+.. ...+|..+.|+|-+. ..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 456788999999999987 5788888773321 1 11221 246799999999764 3788999
Q ss_pred cCCeEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCE
Q 012994 224 SDRSITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGRE 303 (452)
Q Consensus 224 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 303 (452)
.|+.|++||+........ ........ |. .......|.+++|.++|-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~--fg------------------------------~d~~~~ev~S~~Fg~~~lT 193 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNS--FG------------------------------LDARVNDITDLEFSKDGLT 193 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSE--EE------------------------------SCSSCCCEEEEEECTTSSC
T ss_pred cCCEEEEEEcccCCCCCc-chhccccc--cC------------------------------CCcccceEEEEEEcCCCcE
Confidence 999999999986332222 11111000 00 0123356788899887766
Q ss_pred EEEEe--CCCeEEEE
Q 012994 304 FVTGS--YDRTIRIF 316 (452)
Q Consensus 304 l~s~~--~dg~i~iw 316 (452)
|...+ ..|.|+-.
T Consensus 194 LYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 194 LYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEecCCCCCEEEE
Confidence 66644 77877643
No 319
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.07 E-value=0.025 Score=49.05 Aligned_cols=183 Identities=10% Similarity=0.070 Sum_probs=87.7
Q ss_pred CCCCeEEEeCC-------------eEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecC--------CeEE
Q 012994 173 WEGDLFATAGA-------------QVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASD--------RSIT 229 (452)
Q Consensus 173 ~~~~~~~~~~~-------------~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~ 229 (452)
.++.+++.+|. .+.+||..+.+-.. .+.........+.+ ++ .+++.|+.+ ..+.
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LN-SIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TT-EEEEECCEESSTTCCBCCCEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CC-EEEEEeCCcCCCCCcccceEE
Confidence 46666666651 27788887764321 11111111112222 23 677777742 4588
Q ss_pred EEEccCCCCceEEEeecc--cceEEEccCCCceEEeecC------CCeEEEEeCCCcc--ccceeeeCcccceEEEEEcC
Q 012994 230 LYDLRMSSPARKVIMRTK--SNSISWNPMEPMNFTAANE------DCNCYSYDSRKLD--EAKCVHMGHESAVMDIDYSP 299 (452)
Q Consensus 230 i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~s~ 299 (452)
+||+.+.+-...-..... ..+++. .+..+++.|+. ...+..||..+.. ... ........-..+.+
T Consensus 121 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-- 195 (315)
T 4asc_A 121 CYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTARSLFGATVH-- 195 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--
T ss_pred EECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCchhceEEEEE--
Confidence 888876531111111111 112222 23345555554 2468888876532 111 01111111122222
Q ss_pred CCCEEEEEeCCC-----eEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCCC--------------cEEEe
Q 012994 300 TGREFVTGSYDR-----TIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDT--------------NLRLW 359 (452)
Q Consensus 300 ~g~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg--------------~i~iw 359 (452)
++++++.|+.++ .+.+||+.+.+-......... .....+.+ ++++++.|+.++ .+.+|
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~y 273 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRY 273 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEe
Confidence 667788887654 588999988754433211110 11222233 667777777542 36678
Q ss_pred eccccc
Q 012994 360 KAKASE 365 (452)
Q Consensus 360 ~~~~~~ 365 (452)
|+.+.+
T Consensus 274 d~~~~~ 279 (315)
T 4asc_A 274 NEEEKK 279 (315)
T ss_dssp ETTTTE
T ss_pred cCCCCh
Confidence 876543
No 320
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.96 E-value=0.34 Score=47.76 Aligned_cols=283 Identities=9% Similarity=0.040 Sum_probs=147.9
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (452)
.|.++...+++ ..|..|+. +-+..+|..+++...........|.++....+|.+. .|+.+ -+.+++..+.......
T Consensus 192 ~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igT~~-Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 192 FVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLL-AGTDN-GLYVYHNDTTPLQHII 267 (758)
T ss_dssp CEEEEEEETTT-TEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEE-EEETT-EEEEECCTTSCCEEEC
T ss_pred eeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEE-EEeCC-ceeEEecCCCcEEEEE
Confidence 48888887765 55555554 458888987765432211123458888887777644 44544 4778887655432111
Q ss_pred CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceec-----ccCCCceEEEEECCCCCcEEEEE
Q 012994 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSF-----QWGTDTVISVRFNPAEPNVLATT 222 (452)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~ 222 (452)
..... .. ....+.+.++....+|.+.+...+.+.++.....-..... ......|.++....++ .+. .|
T Consensus 268 ~~~~~-~~----~l~~~~i~~i~~D~~g~lWiGT~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g-~lW-iG 340 (758)
T 3ott_A 268 HDSRN-IQ----SLTNNIIWNIFADQEHNIWLGTDYGISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG-FYW-FG 340 (758)
T ss_dssp CCTTC-TT----SCSCSCEEEEEECTTCCEEEEESSSEEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC-CEE-EE
T ss_pred cCCCC-cC----cCCcCeEEEEEEcCCCCEEEEeCCcccccccCCceeEEecccCCCCCCCceEEEEEEcCCC-CEE-Ee
Confidence 10000 00 0113456777777888776665533544433221111110 0123468888877766 444 45
Q ss_pred ecCCeEEEEEccCCCC--ceEEEe--------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeC-----
Q 012994 223 ASDRSITLYDLRMSSP--ARKVIM--------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMG----- 287 (452)
Q Consensus 223 ~~dg~i~i~d~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----- 287 (452)
+.+| +..++..++.. ...+.. ...+.++.. +....+..|+ ++-+..||..+..-.......
T Consensus 341 t~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~ 416 (758)
T 3ott_A 341 GANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE--DKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTY 416 (758)
T ss_dssp ETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE--CTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--C
T ss_pred eCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEE--CCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCC
Confidence 5554 66666554321 111111 011233333 3333344555 357888887653221111111
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----cee---eee---ccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG-----RSR---EIY---HTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~-----~~~---~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
....|.++...++|.+ -.|+..+-|.++|..+. ... ..+ ..-....|.++...++|.+.+.++..+-|
T Consensus 417 ~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl 495 (758)
T 3ott_A 417 NTNWTYYIFEDTAGQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGI 495 (758)
T ss_dssp BSSSEEEEEECTTSEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSE
T ss_pred CCceEEEEEEcCCCCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCc
Confidence 2245788888777764 44665556888885421 111 011 11112358999999999877633334557
Q ss_pred EEeecccccc
Q 012994 357 RLWKAKASEQ 366 (452)
Q Consensus 357 ~iw~~~~~~~ 366 (452)
..+|..+++.
T Consensus 496 ~~~d~~~~~~ 505 (758)
T 3ott_A 496 DKINPRTREV 505 (758)
T ss_dssp EEEETTTTEE
T ss_pred EEEeCCCCce
Confidence 7888776543
No 321
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.95 E-value=0.17 Score=44.10 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=48.4
Q ss_pred ccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE--EEe----ecCCCCeeEEEEccC---CCeEEEE---eCCCc
Q 012994 65 HRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQY----SGHQGAVRGLTVSTD---GRILVSC---GTDCT 132 (452)
Q Consensus 65 h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~----~~h~~~v~~l~~~~~---~~~l~s~---~~dg~ 132 (452)
.-..-..|+|.|+| .++++--..|.|++++..+++.. ..+ .........|+++|+ +.+|+.. ..++.
T Consensus 30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34567899999998 77766655899999987655432 212 123567899999995 3444443 23455
Q ss_pred EEEEeCCC
Q 012994 133 VKLWNVPV 140 (452)
Q Consensus 133 v~iwd~~~ 140 (452)
|.-|.+..
T Consensus 109 v~R~~~~~ 116 (347)
T 3das_A 109 IVRMLYDE 116 (347)
T ss_dssp EEEEEBCT
T ss_pred EEEEEeCC
Confidence 66566544
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.91 E-value=0.24 Score=45.22 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=39.2
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE--EEeec------CCCCeeEEEEccC---CCeEEEEe
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV--CQYSG------HQGAVRGLTVSTD---GRILVSCG 128 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~--~~~~~------h~~~v~~l~~~~~---~~~l~s~~ 128 (452)
..-.+|+|.|+| +++++-...+.|++++..++... ..+.. ..+....|+|+|+ +..|+.+.
T Consensus 27 ~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 27 NKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 456799999998 76666544457988886555432 22221 2456789999995 45555443
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.88 E-value=0.027 Score=44.93 Aligned_cols=141 Identities=9% Similarity=0.001 Sum_probs=77.8
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc------eEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCC
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA------RKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSR 276 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 276 (452)
.+..++|+|++ .+.++ .+|.+.-.+..+.... ..+-. -.....+.+.|++...++ .++.|+-++..
T Consensus 42 ~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTEEEEESCC
T ss_pred cceeEEECCCc-cEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCEEEEeCCC
Confidence 56699999976 55555 6787666665442211 11110 011367778877765444 55999888763
Q ss_pred Ccccc------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce------eeeeccCCcCcEEEEEEcCCC
Q 012994 277 KLDEA------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS------REIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 277 ~~~~~------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~s~~~ 344 (452)
+.... ..+-..--..+..|.+.|+|.+.+.. |+.++-+...++.. ...+-...-....-+.|.+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 32111 11111122467999999999877766 77754333322211 011111122234557789988
Q ss_pred CEEEEeeCCCc
Q 012994 345 SYVISGSDDTN 355 (452)
Q Consensus 345 ~~l~s~~~dg~ 355 (452)
.+.+.. +|.
T Consensus 194 ~l~~v~--~g~ 202 (236)
T 1tl2_A 194 TLFGVQ--GGK 202 (236)
T ss_dssp CEEEEE--TTE
T ss_pred cEEEEe--CCe
Confidence 866655 663
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.025 Score=49.01 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=39.5
Q ss_pred ceEEEeeCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEc--c-CCCeEEEE-eCCCcEEEEeCCCC
Q 012994 80 KGFFSGSMDGDIRLWDIANRRTVCQYSGH-QGAVRGLTVS--T-DGRILVSC-GTDCTVKLWNVPVA 141 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~--~-~~~~l~s~-~~dg~v~iwd~~~~ 141 (452)
.+++.++.||.|.-.|..+|+....+... ..++....-. + ++..++.. +.||.|..++..++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G 77 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG 77 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999999999999999888653 1222221100 1 22233332 46788877776544
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.83 E-value=0.26 Score=44.96 Aligned_cols=159 Identities=9% Similarity=0.103 Sum_probs=87.4
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEee---------cccceEEEccC---CCceEEeecC----
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIMR---------TKSNSISWNPM---EPMNFTAANE---- 266 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~---- 266 (452)
-.....++|.|++ +++++-...+.|.+++..++......... .....++++|+ +..++++.+.
T Consensus 26 l~~P~~~a~~pdG-~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 26 LNKPHALLWGPDN-QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEcCCC-cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3467799999998 56655443357888876544322222211 12237899996 6666655542
Q ss_pred --------CCeEEEEeCCCc----cccceee---e-CcccceEEEEEcCCCCEEEEEeCC--------------------
Q 012994 267 --------DCNCYSYDSRKL----DEAKCVH---M-GHESAVMDIDYSPTGREFVTGSYD-------------------- 310 (452)
Q Consensus 267 --------~~~i~~~d~~~~----~~~~~~~---~-~~~~~v~~~~~s~~g~~l~s~~~d-------------------- 310 (452)
...|..++.... .....++ . ........|+|.|||.+.++.+..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccc
Confidence 235666654321 1111111 1 111246789999999877765431
Q ss_pred ------------CeEEEEECCCCc-----------eeeeeccCCcCcEEEEEEcCCCCEEEE-eeCCCcEEEeecccc
Q 012994 311 ------------RTIRIFQYNGGR-----------SREIYHTKRMQRVFCVKFSCDASYVIS-GSDDTNLRLWKAKAS 364 (452)
Q Consensus 311 ------------g~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~ 364 (452)
|.|.-++.. +. ....+..++ .....++|+|+|.+.++ .+.++.-.|..+..|
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G 260 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG 260 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred ccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence 334333433 22 223344444 56889999998876654 334444455555444
No 326
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.81 E-value=0.2 Score=43.23 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=35.6
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC--------------CcEEEe
Q 012994 300 TGREFVTGSYD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD--------------TNLRLW 359 (452)
Q Consensus 300 ~g~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d--------------g~i~iw 359 (452)
++++++.|+.+ ..+.+||+.+.+-......... .....+.+ ++++++.|+.+ ..+.+|
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~y 283 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKY 283 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEE
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEE
Confidence 66777777653 3577899887654333211110 11122222 56777777754 347778
Q ss_pred eccccc
Q 012994 360 KAKASE 365 (452)
Q Consensus 360 ~~~~~~ 365 (452)
|+.+.+
T Consensus 284 d~~~~~ 289 (318)
T 2woz_A 284 EDDKKE 289 (318)
T ss_dssp ETTTTE
T ss_pred eCCCCE
Confidence 876643
No 327
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.77 E-value=0.059 Score=46.18 Aligned_cols=173 Identities=12% Similarity=0.102 Sum_probs=85.6
Q ss_pred eEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecC-----CeEEEEEccCCC---CceEEEeecc--cceE
Q 012994 184 QVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASD-----RSITLYDLRMSS---PARKVIMRTK--SNSI 251 (452)
Q Consensus 184 ~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~~~~--~~~~ 251 (452)
++.+||..+.+-.. .+.........+.. ++ .+++.|+.+ ..+.+||+.+.. -...-..... ...+
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSL--HD-RIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEEE--CC-EEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 58889987764222 12111111122222 23 677778765 468899987765 2211111111 1122
Q ss_pred EEccCCCceEEeecCC-----CeEEEEeCCCccccc-eeeeCcccceEEEEEcCCCCEEEEEeCC-----CeEEEEECCC
Q 012994 252 SWNPMEPMNFTAANED-----CNCYSYDSRKLDEAK-CVHMGHESAVMDIDYSPTGREFVTGSYD-----RTIRIFQYNG 320 (452)
Q Consensus 252 ~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----g~i~iwd~~~ 320 (452)
+.. +..+++.|+.+ ..+..||..+..=.. .........-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 222 34556665532 367888876532111 111111111112222 67777777754 4588999987
Q ss_pred CceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC-----CcEEEeeccccc
Q 012994 321 GRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 365 (452)
Q Consensus 321 ~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 365 (452)
..-......... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 754433211110 11222222 66777777764 458888887654
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.60 E-value=0.44 Score=43.89 Aligned_cols=94 Identities=12% Similarity=0.070 Sum_probs=66.7
Q ss_pred eEEEEEccC----C-CCceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc-----------ceeeeCccc
Q 012994 227 SITLYDLRM----S-SPARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA-----------KCVHMGHES 290 (452)
Q Consensus 227 ~i~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~ 290 (452)
.+.+.|.+. . .....+........+..+|++.++++.+-.+..+.++|..+.... ......-..
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 356666655 2 234445566777899999999999999999999999999864221 111111223
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
.....+|.++|+...+--.|..|.-|++..
T Consensus 379 GPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 379 GPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred cccEEEECCCCceEeeeeecceEEEEeccH
Confidence 467789999996556666899999999864
No 329
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.52 E-value=0.12 Score=45.55 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=28.0
Q ss_pred eEEEEECCCCceeee--eccCCcCcEEEEEEcCCCCEEEEeeCCC------cEEEeeccccccccc
Q 012994 312 TIRIFQYNGGRSREI--YHTKRMQRVFCVKFSCDASYVISGSDDT------NLRLWKAKASEQLGV 369 (452)
Q Consensus 312 ~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg------~i~iw~~~~~~~~~~ 369 (452)
.+.+||+.+.+-... +...... -.++ ..++++++.||.++ .|.++++++++.+..
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~-~~~~--~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAY-GVSL--PWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBS-SEEE--EETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCCccc-ceeE--EeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 578899887654332 2222211 1222 23678888888543 355568877766543
No 330
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.46 E-value=0.42 Score=42.00 Aligned_cols=194 Identities=9% Similarity=0.047 Sum_probs=95.9
Q ss_pred cccEEEEEeCCC---CcceEEEeeCC-----CcEEEEeCCCCc-----eE-EEee---cCCCCeeEEEEccCCCeEEEEe
Q 012994 66 RDGISCMAKNPN---YLKGFFSGSMD-----GDIRLWDIANRR-----TV-CQYS---GHQGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 66 ~~~V~~~~~~~~---~~~~l~tg~~d-----g~i~iwd~~~~~-----~~-~~~~---~h~~~v~~l~~~~~~~~l~s~~ 128 (452)
......|+|+|+ +..+.++-... +.|..|+...+. .+ ..+. +.......|+|.|||.+.++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 457899999998 41444443332 678888876431 11 1132 1112346899999997666643
Q ss_pred CC-------------CcEEEEeCCCCCCCCCCCCCC-CCCCCeeEEEecCCeeeeeecC-CCCeEEEeCCe-E-------
Q 012994 129 TD-------------CTVKLWNVPVATLTDSDDSTD-NSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGAQ-V------- 185 (452)
Q Consensus 129 ~d-------------g~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i------- 185 (452)
.. |.|.-++... .......... .................+++++ ++.++++..+. -
T Consensus 154 ~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~d 232 (352)
T 2ism_A 154 EVYERELAQDLASLGGKILRLTPEG-EPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHD 232 (352)
T ss_dssp CTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCC
T ss_pred CCCCCccccCCCCCceEEEEEcCCC-CCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCe
Confidence 22 3454444432 1110000000 0011112222234467788999 67777765432 1
Q ss_pred EEEeCCCCC------------------cceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc------eE
Q 012994 186 DIWNHNRSQ------------------PINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA------RK 241 (452)
Q Consensus 186 ~i~d~~~~~------------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~ 241 (452)
.+.-+..+. ++..+. +......++|. ++ .++++....+.|...++...... ..
T Consensus 233 ei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ap~G~~~~-~G-~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~ 309 (352)
T 2ism_A 233 EVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGFPPGNLAFF-RG-DLYVAGLRGQALLRLVLEGERGRWRVLRVET 309 (352)
T ss_dssp EEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCCCEEEEEEE-TT-EEEEEETTTTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCCCCcceEEE-CC-EEEEEECCCCEEEEEEECCCCcceeecchhe
Confidence 132222221 222221 12345667773 34 66666666777888877654421 11
Q ss_pred EE-eecccceEEEccCCCceEEe
Q 012994 242 VI-MRTKSNSISWNPMEPMNFTA 263 (452)
Q Consensus 242 ~~-~~~~~~~~~~~~~~~~~~~~ 263 (452)
+. ....+..+++.|++..+++.
T Consensus 310 ~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 310 ALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp EEESSCCEEEEEECTTSCEEEEE
T ss_pred ecccCCCeeEEEECCCCcEEEEE
Confidence 11 12344567777776544444
No 331
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.40 E-value=0.13 Score=44.20 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=87.4
Q ss_pred eEEEeC----CeEEEEeCCCCCcce--ecccCCCceEEEEECCCCCcEEEEEecC----CeEEEEEccCCCCceEEEeec
Q 012994 177 LFATAG----AQVDIWNHNRSQPIN--SFQWGTDTVISVRFNPAEPNVLATTASD----RSITLYDLRMSSPARKVIMRT 246 (452)
Q Consensus 177 ~~~~~~----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~ 246 (452)
+++.+| .++.+||..+.+-.. .+.........+.+ ++ .+++.|+.+ ..+.+||+.+..-...-....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DN-VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TT-EEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CC-EEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 445554 358899988765322 22211112222222 23 677787755 568888887654222211111
Q ss_pred cc--ceEEEccCCCceEEeecCC------CeEEEEeCCCccccce-eeeCcccceEEEEEcCCCCEEEEEeC--------
Q 012994 247 KS--NSISWNPMEPMNFTAANED------CNCYSYDSRKLDEAKC-VHMGHESAVMDIDYSPTGREFVTGSY-------- 309 (452)
Q Consensus 247 ~~--~~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~-------- 309 (452)
.. ..++. .+..+++.|+.+ ..+..||..+..=... ........-..+.+ ++++++.|+.
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence 11 12221 144556665543 4588888765321100 00011111112222 6677777764
Q ss_pred -CCeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC-----CcEEEeecccc
Q 012994 310 -DRTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKAS 364 (452)
Q Consensus 310 -dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~ 364 (452)
-..+.+||+.+..-......... ..-..+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 34588999988754333211111 11122222 66777777654 35788888764
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.38 E-value=0.085 Score=45.40 Aligned_cols=184 Identities=8% Similarity=0.081 Sum_probs=88.8
Q ss_pred CCCCeEEEeC------CeEEEEeCCCCCccee--cccCCCceEEEEECCCCCcEEEEEec----C-----CeEEEEEccC
Q 012994 173 WEGDLFATAG------AQVDIWNHNRSQPINS--FQWGTDTVISVRFNPAEPNVLATTAS----D-----RSITLYDLRM 235 (452)
Q Consensus 173 ~~~~~~~~~~------~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~ 235 (452)
-++.+++.+| .++.+||..+.+-... +....... +++.. ++ .+++.|+. + ..+.+||+.+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~-~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GG-LLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TT-EEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CC-EEEEECCCcCCCCCCeecceEEEECCCC
Confidence 3555666665 3588999877653221 11111111 22222 23 67777775 2 3578888766
Q ss_pred CCCceEEEeec--ccceEEEccCCCceEEeecCC-----CeEEEEeCCCccccc-eeeeCcccceEEEEEcCCCCEEEEE
Q 012994 236 SSPARKVIMRT--KSNSISWNPMEPMNFTAANED-----CNCYSYDSRKLDEAK-CVHMGHESAVMDIDYSPTGREFVTG 307 (452)
Q Consensus 236 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~s~ 307 (452)
..-...-.... ....++.. +..+++.|+.+ ..+..||..+..=.. .........-..+.+ ++.+++.|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 175 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG 175 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence 53211111111 11122221 34455555432 457788876532110 001111111122222 66777777
Q ss_pred eCC-----CeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC-----CcEEEeeccccc
Q 012994 308 SYD-----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 365 (452)
Q Consensus 308 ~~d-----g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 365 (452)
+.+ ..+.+||+.+..-......... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 754 4588999987654332211110 11222333 67777777764 458888887653
No 333
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.25 E-value=0.1 Score=44.68 Aligned_cols=172 Identities=13% Similarity=0.110 Sum_probs=81.7
Q ss_pred eEEEEeCCCCCccee--cccCCCceEEEEECCCCCcEEEEEecCC-----eEEEEEccCCCCceEEEeecc--cceEEEc
Q 012994 184 QVDIWNHNRSQPINS--FQWGTDTVISVRFNPAEPNVLATTASDR-----SITLYDLRMSSPARKVIMRTK--SNSISWN 254 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~--~~~~~~~ 254 (452)
++.+||..+.+-... +......-..+.+ ++ .+++.|+.++ .+.+||+.+..-...-..... ...++.
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~- 106 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYM--AG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV- 106 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEE--CC-EEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence 578888877643221 1111111112222 23 6777777553 578888766542211111111 112222
Q ss_pred cCCCceEEeecCC-----CeEEEEeCCCccccce-eeeCcccceEEEEEcCCCCEEEEEeCC-------CeEEEEECCCC
Q 012994 255 PMEPMNFTAANED-----CNCYSYDSRKLDEAKC-VHMGHESAVMDIDYSPTGREFVTGSYD-------RTIRIFQYNGG 321 (452)
Q Consensus 255 ~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~d-------g~i~iwd~~~~ 321 (452)
. +..+++.|+.+ ..+..||..+..=... ...........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 107 ~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 107 L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp E-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred E-CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 1 34455555543 2577888765321100 00111111112222 66777777643 35889999877
Q ss_pred ceeeee--ccCCcCcEEEEEEcCCCCEEEEeeCCC-----cEEEeeccccc
Q 012994 322 RSREIY--HTKRMQRVFCVKFSCDASYVISGSDDT-----NLRLWKAKASE 365 (452)
Q Consensus 322 ~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 365 (452)
.-.... .... .....+.+ ++++++.|+.++ .+.+||..+.+
T Consensus 184 ~W~~~~~~p~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 184 EWTYIAEMSTRR-SGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEEEECCCSSCC-BSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred cEEECCCCcccc-ccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 543332 1111 11222222 677777777643 58888887643
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.22 E-value=0.46 Score=40.58 Aligned_cols=159 Identities=9% Similarity=0.036 Sum_probs=84.6
Q ss_pred eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEE-ecCC--eEEEEEccCCCCceEEEeecccceEEEccCCCce
Q 012994 184 QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATT-ASDR--SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMN 260 (452)
Q Consensus 184 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (452)
.|...++...+...... .. +..+++++..+..+- +.++ .|...++.... ...+. .... ..+++++..+
T Consensus 89 ~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt-~~~~--~~~~~~g~~i 159 (302)
T 3s25_A 89 SLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK-NHYL--FTCNTSDRYF 159 (302)
T ss_dssp EEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE-SSCC--CCSEEETTEE
T ss_pred eEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEe-CCCc--eEeeEECCEE
Confidence 46666776665332221 12 225666674444443 1334 44444554332 22232 2222 4567888888
Q ss_pred EEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCceeeeeccCCcCcEEEE
Q 012994 261 FTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYD--RTIRIFQYNGGRSREIYHTKRMQRVFCV 338 (452)
Q Consensus 261 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~ 338 (452)
+.+......|+..++....... +..+ ... ..++|++.+|+-...+ ..|..-++......... . ..+ .
T Consensus 160 y~t~~g~~~Iy~~~l~g~~~~~-l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt-~---~~~--~ 228 (302)
T 3s25_A 160 YYNNPKNGQLYRYDTASQSEAL-FYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT-E---ANI--E 228 (302)
T ss_dssp EEECTTTCCEEEEETTTTEEEE-EECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS-C---SCE--E
T ss_pred EEEeCCCceEEEEECCCCCEEE-EeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe-C---CCc--c
Confidence 8777767889998887654332 2222 222 3456989888876544 35666666655433222 2 223 3
Q ss_pred EEcCCCCEEEEeeC--CCcEEEeecc
Q 012994 339 KFSCDASYVISGSD--DTNLRLWKAK 362 (452)
Q Consensus 339 ~~s~~~~~l~s~~~--dg~i~iw~~~ 362 (452)
.|+|++.+|+-++. .+.|..-++.
T Consensus 229 ~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 229 HYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEETTEEEEEECSSSCEEEEEETT
T ss_pred eEEECCCEEEEEECCCCcEEEEEECC
Confidence 47788888876532 3444444443
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.20 E-value=0.13 Score=44.41 Aligned_cols=180 Identities=7% Similarity=0.014 Sum_probs=87.8
Q ss_pred eEEEeCCeEEEEeCCCCCcce-ecccCCCceEEEEECCCCCcEEEEEec----C-------CeEEEEEccCCCCceEEEe
Q 012994 177 LFATAGAQVDIWNHNRSQPIN-SFQWGTDTVISVRFNPAEPNVLATTAS----D-------RSITLYDLRMSSPARKVIM 244 (452)
Q Consensus 177 ~~~~~~~~i~i~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~~~ 244 (452)
+++.++.++.+||..+++-.. .+..............++ .+++.|+. + ..+..||+.+.+-...-..
T Consensus 7 l~~~GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 7 IFMISEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEEETTEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEEcCCceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 555666789999998876432 111111122222223334 67777773 1 1267788766532111011
Q ss_pred eccc--ceEEEccCCCceEEeecCC--------CeEEEEeCCCcc--ccceeeeCcccceEEEEEcCCCCEEEEEeC-C-
Q 012994 245 RTKS--NSISWNPMEPMNFTAANED--------CNCYSYDSRKLD--EAKCVHMGHESAVMDIDYSPTGREFVTGSY-D- 310 (452)
Q Consensus 245 ~~~~--~~~~~~~~~~~~~~~~~~~--------~~i~~~d~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d- 310 (452)
.... ..++. .+..+++.|+.+ ..+..||..+.. .... .......- +++. -++++++.|+. +
T Consensus 86 p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~-~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 86 PSPRCLFGLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP-LPYVVYGH-TVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp SSCEESCEEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC-CSSCCBSC-EEEE-ETTEEEEECCBCTT
T ss_pred CcchhceeEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC-CCCcccce-eEEE-ECCEEEEEeCCCCC
Confidence 1111 12222 144556665521 458888886532 1110 11111111 1222 36677777776 2
Q ss_pred ----CeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCCC-----cEEEeecccc
Q 012994 311 ----RTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDDT-----NLRLWKAKAS 364 (452)
Q Consensus 311 ----g~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 364 (452)
..+.+||..+.+-......... ..-.++.+ ++++++.|+.++ .+.+||..+.
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCC
Confidence 4689999987654332211110 11122222 677777777654 4778887664
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.18 E-value=0.23 Score=39.69 Aligned_cols=136 Identities=9% Similarity=-0.019 Sum_probs=77.3
Q ss_pred cEEEEEecCCeEEEEEccCCCC------ceEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccc------cc
Q 012994 217 NVLATTASDRSITLYDLRMSSP------ARKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE------AK 282 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~------~~ 282 (452)
.+|++...| +++.=.+..... ...+-. -.....++++|++. ++++ .++.++..+..+... ..
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccccc
Confidence 566667777 555444443331 112222 13567999999665 4444 777888877644211 11
Q ss_pred eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeee------eccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 283 CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREI------YHTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 283 ~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
.+-..--....++.|.|+|.+.++ .||.|+-++-.+...-.. +....-..+..|.|.|+|.+.+.. ||.+
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF 156 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred EecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence 111101112478999999988777 569888777543221111 111112468999999999866655 7775
Q ss_pred EEee
Q 012994 357 RLWK 360 (452)
Q Consensus 357 ~iw~ 360 (452)
+-+.
T Consensus 157 yr~~ 160 (236)
T 1tl2_A 157 YKAL 160 (236)
T ss_dssp EEEC
T ss_pred EecC
Confidence 5433
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.17 E-value=1.1 Score=44.04 Aligned_cols=269 Identities=9% Similarity=0.053 Sum_probs=148.8
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEE-eecC----CCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCC
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQ-YSGH----QGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVA 141 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~-~~~h----~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~ 141 (452)
..|.++....++ .+ ..|+.+ -+..++..+++.... .... ...|.++...+++..|..|+. +-+..+|..++
T Consensus 146 ~~i~~i~~d~~g-~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 146 NTIYSIIRTKDN-QI-YVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp SCEEEEEECTTC-CE-EEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred CeEEEEEEcCCC-CE-EEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 468888888776 44 445544 477888776653221 1111 224888888776665555554 45778887654
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceec-------ccCCCceEEEEECCC
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSF-------QWGTDTVISVRFNPA 214 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~-------~~~~~~i~~~~~~~~ 214 (452)
... ... ......+.++....+|.+.+...+.+.+++..+....... ......|.++....+
T Consensus 222 ~~~-----------~~~-~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 289 (758)
T 3ott_A 222 QIK-----------QTE-AFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE 289 (758)
T ss_dssp EEE-----------EEE-EEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT
T ss_pred eEE-----------ecc-CCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC
Confidence 321 011 1123457788888888888777777888887765432211 112346888888776
Q ss_pred CCcEEEEEecCCeEEEEEccCCCCceEEEe--------ecccceEEEccCCCceEEeecCCCeEEEEeCCCccc-cceee
Q 012994 215 EPNVLATTASDRSITLYDLRMSSPARKVIM--------RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDE-AKCVH 285 (452)
Q Consensus 215 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~ 285 (452)
+ .+ -.|+..| +.++.. ......+.. ...+.++....+ ..+..|+.+ -+..++..+... .....
T Consensus 290 g-~l-WiGT~~G-l~~~~~--~~~~~~~~~~~~~~~~~~~~v~~i~~D~~--g~lWiGt~~-Gl~~~~~~~~~~~~~~~~ 361 (758)
T 3ott_A 290 H-NI-WLGTDYG-ISLSRY--NSALQFIPISQITGTGDGNQFYSLFRDSK--GFYWFGGAN-GLIRFTDPAGERHDAIWY 361 (758)
T ss_dssp C-CE-EEEESSS-EEEECC--CC-CEEEEHHHHSCSCCCCBEEEEEECTT--CCEEEEETT-EEEEESCTTSSCCCCEEE
T ss_pred C-CE-EEEeCCc-cccccc--CCceeEEecccCCCCCCCceEEEEEEcCC--CCEEEeeCC-cceeecccccccceeEEe
Confidence 6 44 4455556 544432 111222211 112233333333 334445544 466666543211 11111
Q ss_pred e-------CcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccC-----CcCcEEEEEEcCCCCEEEEeeCC
Q 012994 286 M-------GHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTK-----RMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 286 ~-------~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
. -....|.++.-..+|++-+ |+ ++-+..||..+++........ ....|.++...++|.+.+ |+..
T Consensus 362 ~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~ 438 (758)
T 3ott_A 362 RMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCL 438 (758)
T ss_dssp CTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESS
T ss_pred ccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECC
Confidence 0 1124588888888887544 44 456999999877654322111 124588888887776544 6666
Q ss_pred CcEEEeecc
Q 012994 354 TNLRLWKAK 362 (452)
Q Consensus 354 g~i~iw~~~ 362 (452)
+-|.+++..
T Consensus 439 ~Gl~~~~~~ 447 (758)
T 3ott_A 439 GGIFVVDKH 447 (758)
T ss_dssp SCEEEEEHH
T ss_pred CceEEEccc
Confidence 667888754
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.07 E-value=0.42 Score=41.63 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=81.8
Q ss_pred CCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceEEEe-------ecccceEEEccC---CCceEEee--cCCCe
Q 012994 202 GTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARKVIM-------RTKSNSISWNPM---EPMNFTAA--NEDCN 269 (452)
Q Consensus 202 ~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~~--~~~~~ 269 (452)
.-.....++|.|++ .++++--..|.|++++...+........ ......++++|+ +..++++- ..+..
T Consensus 30 gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 34567899999998 5665554489999998654443211111 223467899985 44444432 24556
Q ss_pred EEEEeCCCc-------cccceeee----CcccceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCCc---
Q 012994 270 CYSYDSRKL-------DEAKCVHM----GHESAVMDIDYSPTGREFVTGSY-------------DRTIRIFQYNGGR--- 322 (452)
Q Consensus 270 i~~~d~~~~-------~~~~~~~~----~~~~~v~~~~~s~~g~~l~s~~~-------------dg~i~iwd~~~~~--- 322 (452)
|.-|..... .....++. .....-..|.|.|||.+.++.+. .|.|.=.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666655431 11111111 11112456999999987776542 3444444543210
Q ss_pred ----eeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 323 ----SREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 323 ----~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
....+..++ .....++|+|+|.+.++
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence 112333333 34678999998886665
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.78 E-value=0.5 Score=48.93 Aligned_cols=195 Identities=8% Similarity=0.070 Sum_probs=120.6
Q ss_pred eecCCCCeEEEeC-CeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCC-CCceEEEe---
Q 012994 170 DHQWEGDLFATAG-AQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMS-SPARKVIM--- 244 (452)
Q Consensus 170 ~~~~~~~~~~~~~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~--- 244 (452)
-.+|..++++.-. ..+.|+|+.+...+..+... .+|.--.|-... .|+..+ +..|.-|++... .+...+..
T Consensus 72 IMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN--TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecCCC--eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3567777777765 47999999999888887764 456667776543 444443 467999999643 23222221
Q ss_pred --ecccceEEEccCCCceEEeec------CCCeEEEEeCCCccccceeeeCcccceEEEEEc--C-CCCEEEEEeC---C
Q 012994 245 --RTKSNSISWNPMEPMNFTAAN------EDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYS--P-TGREFVTGSY---D 310 (452)
Q Consensus 245 --~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s--~-~g~~l~s~~~---d 310 (452)
..++.....+++...++++|- -.|.+.+|..... ..+...||......+... + ....++.+.. .
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~--~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc--cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 334455667778888777764 3467778876642 333444666554444332 1 1223332222 2
Q ss_pred CeEEEEECCCC---ce------eeeeccC--CcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 311 RTIRIFQYNGG---RS------REIYHTK--RMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 311 g~i~iwd~~~~---~~------~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
+.++|-++... .. ...+... ...-..++..|+.-..++..+.-|.|+++|+.+|.++..-
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 68999888543 11 1111111 1233557888888788888899999999999999987433
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.73 E-value=0.2 Score=43.26 Aligned_cols=182 Identities=9% Similarity=0.030 Sum_probs=85.2
Q ss_pred CeEEEeCCeEEEEeCCCCCccee-ccc-CCCceEEEEECCCCCcEEEEEec----CC-------eEEEEEccCCCCceEE
Q 012994 176 DLFATAGAQVDIWNHNRSQPINS-FQW-GTDTVISVRFNPAEPNVLATTAS----DR-------SITLYDLRMSSPARKV 242 (452)
Q Consensus 176 ~~~~~~~~~i~i~d~~~~~~~~~-~~~-~~~~i~~~~~~~~~~~~l~~~~~----dg-------~i~i~d~~~~~~~~~~ 242 (452)
.+++.++..+.+||..+.+-... +.. ....-.+++ ..++ .+++.|+. ++ .+..||..+..-...-
T Consensus 17 ~i~~~GG~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~~~-~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 17 LILLVNDTAAVAYDPMENECYLTALAEQIPRNHSSIV-TQQN-QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEEECSSEEEEEETTTTEEEEEEECTTSCSSEEEEE-CSSS-CEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhhccccceEEECCCCCceecccCCccCCccceEEE-EECC-EEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 35556666789999988764331 111 111122232 3334 67777873 12 1667787654321111
Q ss_pred Eeecc--cceEEEccCCCceEEeecCC-------CeEEEEeCCCccccce-eeeCcccceEEEEEcCCCCEEEEEeC---
Q 012994 243 IMRTK--SNSISWNPMEPMNFTAANED-------CNCYSYDSRKLDEAKC-VHMGHESAVMDIDYSPTGREFVTGSY--- 309 (452)
Q Consensus 243 ~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~i~~~d~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~l~s~~~--- 309 (452)
..... ...++.. +..+++.|+.+ ..+..||..+..=... ........- +++. .++++++.|+.
T Consensus 95 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~ 170 (318)
T 2woz_A 95 PLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGH-NVIS-HNGMIYCLGGKTDD 170 (318)
T ss_dssp CBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESC-EEEE-ETTEEEEECCEESS
T ss_pred CCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccccc-EEEE-ECCEEEEEcCCCCC
Confidence 11111 1122222 34555555532 3577888765321100 000000111 1222 36677777764
Q ss_pred ---CCeEEEEECCCCceeeeeccCCc-CcEEEEEEcCCCCEEEEeeCC-----CcEEEeeccccc
Q 012994 310 ---DRTIRIFQYNGGRSREIYHTKRM-QRVFCVKFSCDASYVISGSDD-----TNLRLWKAKASE 365 (452)
Q Consensus 310 ---dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 365 (452)
-..+.+||+.+.+-......... .....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 23589999988754333211110 11122222 66777777643 346678876543
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.66 E-value=1.3 Score=40.82 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=128.3
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCC--------eeE------EEe-cCCeeeeee---cCCCCeEEEeC---
Q 012994 124 LVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEP--------LAV------YVW-KNSFWAVDH---QWEGDLFATAG--- 182 (452)
Q Consensus 124 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~~~------~~~-~~~~~~~~~---~~~~~~~~~~~--- 182 (452)
+.||+..|.|+|+-+.+++.+............ ... +.+ ...-..+++ ..||+++...+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 678888999999998887665432221110000 000 000 000011111 23677777776
Q ss_pred CeEEEEeCCCCCcceeccc-CCCceEEEEEC--CCCCcEEEEEec-------CCeE------------EEEEccCCCCce
Q 012994 183 AQVDIWNHNRSQPINSFQW-GTDTVISVRFN--PAEPNVLATTAS-------DRSI------------TLYDLRMSSPAR 240 (452)
Q Consensus 183 ~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~--~~~~~~l~~~~~-------dg~i------------~i~d~~~~~~~~ 240 (452)
..+...++...+.-+.+.. ....+.++.+. |+. .++++++. ||.. ...|..+.+...
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T-~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHT-KYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBC-CEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCc-cEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 3577778877765554443 34567777776 444 45555553 2221 112333333334
Q ss_pred EEEeecccceEEEccCCCceEEeecC--------------CCeEEEE-------------------------eCCC----
Q 012994 241 KVIMRTKSNSISWNPMEPMNFTAANE--------------DCNCYSY-------------------------DSRK---- 277 (452)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~i~~~-------------------------d~~~---- 277 (452)
.+............+++.+.+.++.+ ...+.++ |.+.
T Consensus 232 Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~ 311 (638)
T 3sbq_A 232 QVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGK 311 (638)
T ss_dssp EEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTB
T ss_pred EEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccccc
Confidence 44444455555666666666655422 1123333 3332
Q ss_pred ccccceeeeCcccceEEEEEcCCCCEEEEEe-CCCeEEEEECCCC------ce-----eeeeccCCcCcEEEEEEcCCCC
Q 012994 278 LDEAKCVHMGHESAVMDIDYSPTGREFVTGS-YDRTIRIFQYNGG------RS-----REIYHTKRMQRVFCVKFSCDAS 345 (452)
Q Consensus 278 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~dg~i~iwd~~~~------~~-----~~~~~~~~~~~v~~~~~s~~~~ 345 (452)
..... .+..-......+..+|||++++.++ .+.++.++|++.. +. .......-.-.....+|.++|.
T Consensus 312 ~~~~~-~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 312 DSKFT-RYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp CCSSE-EEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred CCceE-EEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 11111 1111223345688999999987665 5889999998741 11 0011111124577899999995
Q ss_pred EEEEeeCCCcEEEeecccc
Q 012994 346 YVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 346 ~l~s~~~dg~i~iw~~~~~ 364 (452)
-..|---|..|.-|++...
T Consensus 391 aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEETTTTEEEEEEHHHH
T ss_pred eEeeeeecceEEEEeccHH
Confidence 5556668999999999764
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.12 Score=44.88 Aligned_cols=114 Identities=11% Similarity=0.058 Sum_probs=70.6
Q ss_pred cEEEEEecCCeEEEEEccCCCCceEEEeecccceEEEc----cCCCceEEee-cCCCeEEEEeCCCccccceeeeC---c
Q 012994 217 NVLATTASDRSITLYDLRMSSPARKVIMRTKSNSISWN----PMEPMNFTAA-NEDCNCYSYDSRKLDEAKCVHMG---H 288 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~---~ 288 (452)
.++++++.||.|.-+|..+++....+........+... +.+...++.. ..+|.++.++..+.......... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999998888877654101111111 1122344444 68999999998765332211111 1
Q ss_pred ccceEE---EEE-c----CCCCEEEEEeCCCeEEEEECCCCceeeeeccC
Q 012994 289 ESAVMD---IDY-S----PTGREFVTGSYDRTIRIFQYNGGRSREIYHTK 330 (452)
Q Consensus 289 ~~~v~~---~~~-s----~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 330 (452)
..++.. ..+ . ..+..+++|+.+|.+...|+.+|+.+..+...
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 111111 000 0 14567889999999999999999999888654
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.12 E-value=1.3 Score=42.98 Aligned_cols=147 Identities=10% Similarity=0.145 Sum_probs=78.7
Q ss_pred ceEEEeeCC----CcEEEEeCCCCceEEEe-e------cCCCCeeEEEEcc-CCCeEEEEeCC------CcEEEEeCCCC
Q 012994 80 KGFFSGSMD----GDIRLWDIANRRTVCQY-S------GHQGAVRGLTVST-DGRILVSCGTD------CTVKLWNVPVA 141 (452)
Q Consensus 80 ~~l~tg~~d----g~i~iwd~~~~~~~~~~-~------~h~~~v~~l~~~~-~~~~l~s~~~d------g~v~iwd~~~~ 141 (452)
.+++.||.+ ..+.+||..+.+-...- . .....-.+++..+ ++..++.||.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 677777753 46888998776533221 1 0111122333333 67777777754 35778888765
Q ss_pred CCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCC----eEEEEeCCCCCccee-----cccCCCceEEEEEC
Q 012994 142 TLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGA----QVDIWNHNRSQPINS-----FQWGTDTVISVRFN 212 (452)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~i~d~~~~~~~~~-----~~~~~~~i~~~~~~ 212 (452)
........ + ....-.+...-.++.+++.+|. ++.+||..+..-... .........++.+.
T Consensus 479 ~W~~~~~~------p-----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 479 EWSMIKSL------S-----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp EEEECCCC------S-----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE
T ss_pred cEEECCCC------C-----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe
Confidence 43222110 0 0111112222237777777763 689999887643221 11112222334555
Q ss_pred CCCCcEEEEEec--C-----CeEEEEEccCCC
Q 012994 213 PAEPNVLATTAS--D-----RSITLYDLRMSS 237 (452)
Q Consensus 213 ~~~~~~l~~~~~--d-----g~i~i~d~~~~~ 237 (452)
.....+++.|+. + +.+.+||+.+..
T Consensus 548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 443367788876 2 458899998776
No 344
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.72 E-value=0.63 Score=45.19 Aligned_cols=190 Identities=9% Similarity=0.049 Sum_probs=94.3
Q ss_pred CCCCeEEEeC------CeEEEEeCCCCCcceec-c------cCCCceEEEEECC-CCCcEEEEEecCC------eEEEEE
Q 012994 173 WEGDLFATAG------AQVDIWNHNRSQPINSF-Q------WGTDTVISVRFNP-AEPNVLATTASDR------SITLYD 232 (452)
Q Consensus 173 ~~~~~~~~~~------~~i~i~d~~~~~~~~~~-~------~~~~~i~~~~~~~-~~~~~l~~~~~dg------~i~i~d 232 (452)
.++.+++.+| .++.+||..+++-...- . .....-.+++..+ ++ .+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~-~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNN-QLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTT-EEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCC-EEEEEcCCCCCCCccccEEEEe
Confidence 4566666665 24888998876533222 1 0111112233332 34 6777877543 477888
Q ss_pred ccCCCCceE--EEeecccceEEEccCCCceEEeecCCC--eEEEEeCCCcccccee----eeCcccceEEEEEcCC-CCE
Q 012994 233 LRMSSPARK--VIMRTKSNSISWNPMEPMNFTAANEDC--NCYSYDSRKLDEAKCV----HMGHESAVMDIDYSPT-GRE 303 (452)
Q Consensus 233 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~d~~~~~~~~~~----~~~~~~~v~~~~~s~~-g~~ 303 (452)
+.+..-... +.......+.+... +..+++.|+.++ .+..||..+..=.... .........++.+..+ +++
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 776431111 11111122333323 444555555433 6888988753211000 0011112233555554 677
Q ss_pred EEEEeC--C-----CeEEEEECCCCc------eeeeec---cCCcCcEEEEEEcCCCCEEEEeeCC--------CcEEEe
Q 012994 304 FVTGSY--D-----RTIRIFQYNGGR------SREIYH---TKRMQRVFCVKFSCDASYVISGSDD--------TNLRLW 359 (452)
Q Consensus 304 l~s~~~--d-----g~i~iwd~~~~~------~~~~~~---~~~~~~v~~~~~s~~~~~l~s~~~d--------g~i~iw 359 (452)
++.|+. + ..+.+||+.+.. -..... ... .....+. ..++++++.||.+ ..+.+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R-~~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQR-YGSQIKY-ITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCC-BSCEEEE-EETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCc-ccceEEE-eCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 777775 2 458899998876 111111 111 1122233 3337777777743 458889
Q ss_pred ecccccc
Q 012994 360 KAKASEQ 366 (452)
Q Consensus 360 ~~~~~~~ 366 (452)
|..+.+-
T Consensus 632 d~~t~~W 638 (695)
T 2zwa_A 632 DPLSETL 638 (695)
T ss_dssp ETTTTEE
T ss_pred ECCCCeE
Confidence 8876654
No 345
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.91 E-value=3 Score=36.48 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=58.1
Q ss_pred cccEEEEEeCCC---CcceEEEeeC---C----CcEEEEeCCCC-------ceE-EEeec-CCCCeeEEEEccCCCeEEE
Q 012994 66 RDGISCMAKNPN---YLKGFFSGSM---D----GDIRLWDIANR-------RTV-CQYSG-HQGAVRGLTVSTDGRILVS 126 (452)
Q Consensus 66 ~~~V~~~~~~~~---~~~~l~tg~~---d----g~i~iwd~~~~-------~~~-~~~~~-h~~~v~~l~~~~~~~~l~s 126 (452)
......|+++|+ +..+.++-+. + +.|..|+.... +.+ ..+.. .......|+|.|||.+.++
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 356889999997 4144443332 3 56778877644 111 11221 1123467999999987666
Q ss_pred EeCC-------------CcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecC-CCCeEEEeCC
Q 012994 127 CGTD-------------CTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQW-EGDLFATAGA 183 (452)
Q Consensus 127 ~~~d-------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 183 (452)
.+.. |.|.-++.. +.... ...................+++++ ++.++++..+
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~----~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEE-GRPPA----DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTT-SCCCT----TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCC-CCCCC----CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence 4432 334444432 11100 000001112222234456889999 7787777653
No 346
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=93.89 E-value=0.91 Score=39.80 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=26.5
Q ss_pred ceEEEeeC-C---------CcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEEeCC
Q 012994 80 KGFFSGSM-D---------GDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCGTD 130 (452)
Q Consensus 80 ~~l~tg~~-d---------g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~~d 130 (452)
.+++.|+. + ..+.+||+.+.+-...-... .......+...+++.++.|+.+
T Consensus 67 ~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 67 NLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred EEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 66777765 2 46889998876432211101 1111111122466777788754
No 347
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=93.67 E-value=2.8 Score=35.28 Aligned_cols=240 Identities=10% Similarity=0.066 Sum_probs=124.9
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCC
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSD 147 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~ 147 (452)
.|..++.... ..++. . ||.|+.|-....-.+..-......|..++...+. .++. . ||.|..|-..........
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 5667776654 33333 4 8999999765432211111123467777765443 2333 4 899999976543222110
Q ss_pred CCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCe
Q 012994 148 DSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRS 227 (452)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 227 (452)
.. ....+..++......++++ ++.+..|-......+..-......|..++..... .++ -. ||.
T Consensus 98 -------~~-----~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~-l~-~G~ 160 (282)
T 3qhy_B 98 -------AE-----ARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALA-VK-NGG 160 (282)
T ss_dssp -------GG-----GSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEE-EE-TTE
T ss_pred -------cc-----cCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEE-EE-CCE
Confidence 00 0235666666666667777 8889999766533222111123457777765432 233 33 799
Q ss_pred EEEEEccCCCCceE-EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEE
Q 012994 228 ITLYDLRMSSPARK-VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVT 306 (452)
Q Consensus 228 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s 306 (452)
|..|-......+.. ......+..++ .-....++. .++.++.|-.....+.-... .....|..++....-. ++.
T Consensus 161 v~~wG~n~~gqlg~p~~~~~~v~~i~--~G~~hs~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al 234 (282)
T 3qhy_B 161 VIAWGDNYFGQTTVPAEAQSGVDDVA--GGIFHSLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYS-LAL 234 (282)
T ss_dssp EEEEECCTTSTTSCCGGGGSSEEEEE--ECSSEEEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCE-EEE
T ss_pred EEEecCCCCCCCCCceecCCCeEEEE--ecCCEEEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEE-EEE
Confidence 99997654332210 00111222222 222333333 58999999765543321111 1123577777654433 333
Q ss_pred EeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCC
Q 012994 307 GSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDA 344 (452)
Q Consensus 307 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~ 344 (452)
. ||.|+.|=......... ...|..++-....
T Consensus 235 ~--~g~v~~wG~n~~gq~~v-----~~~v~~iaaG~~h 265 (282)
T 3qhy_B 235 K--NGKVIAWGSSRTAPSSV-----QSGVSSIEAGPNA 265 (282)
T ss_dssp E--TTEEEEESTTCCCCGGG-----SSCEEEEEECSSC
T ss_pred E--CCEEEEecCCCCccccC-----CCCcEEEEECcCe
Confidence 3 99999997665433322 1346666655443
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.61 E-value=3 Score=35.48 Aligned_cols=232 Identities=7% Similarity=0.014 Sum_probs=119.8
Q ss_pred CCCcEEEEeCCCCceEEEeecCCCCeeEEEEccCCCeEEEEeCC--------------CcEEEEeCCCCCCCCCCCCCCC
Q 012994 87 MDGDIRLWDIANRRTVCQYSGHQGAVRGLTVSTDGRILVSCGTD--------------CTVKLWNVPVATLTDSDDSTDN 152 (452)
Q Consensus 87 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~s~~~d--------------g~v~iwd~~~~~~~~~~~~~~~ 152 (452)
.++.|...+..... ...+... . +--+++++.+|+-+... ..|+..++....
T Consensus 35 d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~---------- 99 (302)
T 3s25_A 35 DNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG---------- 99 (302)
T ss_dssp GTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC----------
T ss_pred CCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc----------
Confidence 35667777754333 3334322 1 23457788888777543 345555654431
Q ss_pred CCCCeeEEEecCCeeeeeecCCCCeEEEeC----C--eEEEEeCCCCCcceecccCCCceEEEEECCCCCcEEEEEecCC
Q 012994 153 SSEPLAVYVWKNSFWAVDHQWEGDLFATAG----A--QVDIWNHNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDR 226 (452)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 226 (452)
...+. .. ....+++++..++..+ + .|...++..... ..+..+.. ..+++.+..+..+.....
T Consensus 100 ---~~~l~--~~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 100 ---STVLD--PD--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp ---CEEEE--CS--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred ---ceEee--cC--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 11111 11 1225566777666543 2 466666664433 33332222 345667756655655466
Q ss_pred eEEEEEccCCCCceEEEeecccceEEEccCCCceEEeecCC-CeEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEE
Q 012994 227 SITLYDLRMSSPARKVIMRTKSNSISWNPMEPMNFTAANED-CNCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFV 305 (452)
Q Consensus 227 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 305 (452)
.|...++...... .+ ..... ...+.|++..++.+...+ ..|...++........ .. ..+ ..|+|++.+|.
T Consensus 168 ~Iy~~~l~g~~~~-~l-~~~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L--t~--~~~--~~~~~~g~~Iy 238 (302)
T 3s25_A 168 QLYRYDTASQSEA-LF-YDCNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL--TE--ANI--EHYNVYGSLIF 238 (302)
T ss_dssp CEEEEETTTTEEE-EE-ECSCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC--SC--SCE--EEEEEETTEEE
T ss_pred eEEEEECCCCCEE-EE-eCCCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE--eC--CCc--ceEEECCCEEE
Confidence 7777777654432 22 22222 234568888877775443 5777777765443222 11 222 34788888887
Q ss_pred EEe--CCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEee-CCCcEEEee
Q 012994 306 TGS--YDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGS-DDTNLRLWK 360 (452)
Q Consensus 306 s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~iw~ 360 (452)
-++ ..+.|..-++......... .. .+.. +++.+.+|+-.. ..+.|..-+
T Consensus 239 ~~~~~~~~~i~~~~~DG~~r~~l~-~~---~~~~--i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 239 YQRGGDNPALCVVKNDGTGFKELA-KG---EFCN--INVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEECSSSCEEEEEETTSCCCEEEE-ES---CEEE--EEECSSEEEEEETTTCCEEEEE
T ss_pred EEECCCCcEEEEEECCCCccEEee-CC---ccce--EEEeCCEEEEEECCCCeEEEEE
Confidence 653 2456777777654333332 22 2333 344556665443 334444333
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=93.29 E-value=4 Score=35.92 Aligned_cols=168 Identities=9% Similarity=0.165 Sum_probs=99.5
Q ss_pred CeEEEEeCCCC--CcceecccC------CCceEEEEEC---CC---CCcE-EEEEecCCeEEEEEccCCCCceEE-----
Q 012994 183 AQVDIWNHNRS--QPINSFQWG------TDTVISVRFN---PA---EPNV-LATTASDRSITLYDLRMSSPARKV----- 242 (452)
Q Consensus 183 ~~i~i~d~~~~--~~~~~~~~~------~~~i~~~~~~---~~---~~~~-l~~~~~dg~i~i~d~~~~~~~~~~----- 242 (452)
-.|.+||+.+. +.++.+... ...+..+.+. |. +..+ .++=+..+.|.++|+.+++.-+..
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 46889999999 887766542 3457788877 22 1233 334445778999999876544332
Q ss_pred --------------EeecccceEEEccC----CCceEEeecCCCeEEEEeCCCcc-----ccceeeeCcc---cceEEEE
Q 012994 243 --------------IMRTKSNSISWNPM----EPMNFTAANEDCNCYSYDSRKLD-----EAKCVHMGHE---SAVMDID 296 (452)
Q Consensus 243 --------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~d~~~~~-----~~~~~~~~~~---~~v~~~~ 296 (452)
.....+..++.+|+ ++.++...-....++.....-+. ..... .+.. ..-..++
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~ 281 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALA 281 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEE
Confidence 11234556777877 55566555555556555432111 11111 1222 2334566
Q ss_pred Ec-CCCCEEEEEeCCCeEEEEECCC-C----ceeeeeccCCcCcEEEEEEcCCCCEEEEee
Q 012994 297 YS-PTGREFVTGSYDRTIRIFQYNG-G----RSREIYHTKRMQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 297 ~s-~~g~~l~s~~~dg~i~iwd~~~-~----~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 351 (452)
+. .+|.++++--..+.|..|+..+ . .............+..+.+.++|.+.+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 75 6787777777888999999876 1 222223333446788888877776555443
No 350
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=92.03 E-value=9.4 Score=37.05 Aligned_cols=96 Identities=10% Similarity=0.112 Sum_probs=55.9
Q ss_pred CCCeEEEEeCCCcc-------ccceee-eCcccceEEEEEcCCCCEEEEEeCCCe--EEEEECCCCc-eeee-eccCCcC
Q 012994 266 EDCNCYSYDSRKLD-------EAKCVH-MGHESAVMDIDYSPTGREFVTGSYDRT--IRIFQYNGGR-SREI-YHTKRMQ 333 (452)
Q Consensus 266 ~~~~i~~~d~~~~~-------~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~ 333 (452)
..+.+...++.... .....+ ......+..+.|..+ .++++...++. +.++|+.++. .... +.....+
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 46778888887642 122222 234456888899876 56777777765 6677776664 1222 2222224
Q ss_pred cEEEEEEcCCCC-EEEEee---CCCcEEEeecc
Q 012994 334 RVFCVKFSCDAS-YVISGS---DDTNLRLWKAK 362 (452)
Q Consensus 334 ~v~~~~~s~~~~-~l~s~~---~dg~i~iw~~~ 362 (452)
.+....+++++. ++++.+ .-+.+..+|+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 576677777665 444433 24667777765
No 351
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.19 E-value=8.7 Score=35.01 Aligned_cols=29 Identities=24% Similarity=0.160 Sum_probs=22.8
Q ss_pred CeeEEEEccCCC-eEEEEeCCCcEEEEeCC
Q 012994 111 AVRGLTVSTDGR-ILVSCGTDCTVKLWNVP 139 (452)
Q Consensus 111 ~v~~l~~~~~~~-~l~s~~~dg~v~iwd~~ 139 (452)
.-+.|+|.|++. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 467899999986 45666788999999753
No 352
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.86 E-value=7.7 Score=33.84 Aligned_cols=67 Identities=6% Similarity=0.112 Sum_probs=37.6
Q ss_pred ceEEEEECCC------CCcEEEEEecCCeEEEEEccCCCCceEEEe----ecccceEEEccCCCceEEeecCCCeEE
Q 012994 205 TVISVRFNPA------EPNVLATTASDRSITLYDLRMSSPARKVIM----RTKSNSISWNPMEPMNFTAANEDCNCY 271 (452)
Q Consensus 205 ~i~~~~~~~~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (452)
.+..+.|... ...++++....+.|...++........... ...+..+++.|++..++++-..++.|+
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ 348 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELL 348 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence 4667777642 136776666778888888875433222221 124567777777764444333444443
No 353
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.57 E-value=6.9 Score=32.84 Aligned_cols=226 Identities=8% Similarity=0.018 Sum_probs=115.5
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEe
Q 012994 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWN 189 (452)
Q Consensus 110 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d 189 (452)
..|..|+.... +.+... ||.|..|-........... .....+..++....-.+++. ++.+..|-
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~------------~~~~~i~~ia~G~~hs~~l~-~G~v~~wG 87 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPA------------ATQSGVDAIAAGNYHSLALK-DGEVIAWG 87 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCG------------GGGSCCCEEEECSSEEEEEE-TTEEEEEE
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCc------------cCCCCEEEEEeCCCEEEEEE-CCEEEEee
Confidence 35777776543 333335 8999999765432221100 01223445555444444453 67788887
Q ss_pred CCCCCcceecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCceE-EEeecccceEEEccCCCceEEeecCCC
Q 012994 190 HNRSQPINSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPARK-VIMRTKSNSISWNPMEPMNFTAANEDC 268 (452)
Q Consensus 190 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
....-.+..-..-...|..++.... ..++-. ||.|..|-......+.. ......+..++ .-....++. . ++
T Consensus 88 ~n~~Gqlg~P~~~~~~v~~ia~G~~---hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~--~G~~~~~~l-~-~G 159 (282)
T 3qhy_B 88 GNEDGQTTVPAEARSGVDAIAAGAW---ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD--GGVYTALAV-K-NG 159 (282)
T ss_dssp CCTTSTTCCCGGGSSSEEEEEEETT---EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE--ECSSEEEEE-E-TT
T ss_pred CCCCCCCCCCcccCCCeEEEECcCC---EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE--cccCEEEEE-E-CC
Confidence 6543222111111346777777653 333445 99999997654332210 00111122222 222222332 3 68
Q ss_pred eEEEEeCCCccccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEE
Q 012994 269 NCYSYDSRKLDEAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVI 348 (452)
Q Consensus 269 ~i~~~d~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 348 (452)
.++.|-.....+.-... .-...|..++...+ ..++. .||.|+.|=....-.+.... .....|..++...+..+++
T Consensus 160 ~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~~al 234 (282)
T 3qhy_B 160 GVIAWGDNYFGQTTVPA-EAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYSLAL 234 (282)
T ss_dssp EEEEEECCTTSTTSCCG-GGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCEEEE
T ss_pred EEEEecCCCCCCCCCce-ecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEEEEE
Confidence 89888765543322111 11345777776543 23444 59999999765432222111 1124577777655443333
Q ss_pred EeeCCCcEEEeeccccccc
Q 012994 349 SGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 349 s~~~dg~i~iw~~~~~~~~ 367 (452)
+ ||.|+.|-.....++
T Consensus 235 ~---~g~v~~wG~n~~gq~ 250 (282)
T 3qhy_B 235 K---NGKVIAWGSSRTAPS 250 (282)
T ss_dssp E---TTEEEEESTTCCCCG
T ss_pred E---CCEEEEecCCCCccc
Confidence 3 899999987765444
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=88.47 E-value=14 Score=33.63 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=60.2
Q ss_pred cccceEEEccCCCceEEeecCCCeEEEEeCCCcc--ccce-----eee----CcccceEEEEEcCC----CCEEEEEeC-
Q 012994 246 TKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLD--EAKC-----VHM----GHESAVMDIDYSPT----GREFVTGSY- 309 (452)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~-----~~~----~~~~~v~~~~~s~~----g~~l~s~~~- 309 (452)
.....+++.|++...++++...|.|++++..... .... ... ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3456788999986334455667899999754321 1111 111 11456789999996 444443332
Q ss_pred -C----------CeEEEEECCCC----------ceeeeec-cCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 310 -D----------RTIRIFQYNGG----------RSREIYH-TKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 310 -d----------g~i~iwd~~~~----------~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
+ ..|.-|.+..+ +.+.... .........|+|.|||.+.++.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1 13444665431 1111111 11123468899999998877766543
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=87.93 E-value=2.2 Score=40.11 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 291 AVMDIDYSPTGREFVTGSYD------------RTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
..-.|+|+|.|+++++-..+ ..+.+.+..+++....+.......++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34679999999977665432 2466677778887777766667899999999999988764
No 356
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.73 E-value=14 Score=32.64 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=36.7
Q ss_pred ccEEEEEeCCCC-cceEEEeeCCCcEEEEeCCCCceEEEeec-------------------CCCCeeEEEEcc-CCCeEE
Q 012994 67 DGISCMAKNPNY-LKGFFSGSMDGDIRLWDIANRRTVCQYSG-------------------HQGAVRGLTVST-DGRILV 125 (452)
Q Consensus 67 ~~V~~~~~~~~~-~~~l~tg~~dg~i~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~~-~~~~l~ 125 (452)
..|.++++.|.. ...+..++..+.|...+ ..++.-..+.. ....|.+|.+.| +...|+
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~ 193 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLY 193 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEE
Confidence 368899998732 25666666666665553 22332222211 123578999987 344555
Q ss_pred EEeCCCcEE
Q 012994 126 SCGTDCTVK 134 (452)
Q Consensus 126 s~~~dg~v~ 134 (452)
.+..++.|.
T Consensus 194 vg~~~ggl~ 202 (394)
T 3b7f_A 194 IGMSSGGVF 202 (394)
T ss_dssp EEEETBEEE
T ss_pred EEECCCCEE
Confidence 555444333
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=85.95 E-value=4.2 Score=37.79 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=44.5
Q ss_pred cceEEEEEcCCCCEEEEEeC------------CCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEe
Q 012994 290 SAVMDIDYSPTGREFVTGSY------------DRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISG 350 (452)
Q Consensus 290 ~~v~~~~~s~~g~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 350 (452)
.....|.|+++|.+.++... ...|..++..+++....+.......++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 34678999999987774322 12577777777877666644444679999999999988764
No 358
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=85.31 E-value=30 Score=34.08 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=40.9
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC-------CCCeeEEEEccC-CCeEEEEe
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-------QGAVRGLTVSTD-GRILVSCG 128 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~-~~~l~s~~ 128 (452)
.+.|.+|+++|..+..++.++..+.|...+ ..++.-..+..+ ...|.+|++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999998667788888888776665 344433333322 246999999883 33444443
No 359
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=85.27 E-value=19 Score=31.77 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=27.9
Q ss_pred ceEEEeeCCCcEEEEeCCC-CceEEEe--ecCCCCeeEEEEcc-CCCeEEEEeCCC
Q 012994 80 KGFFSGSMDGDIRLWDIAN-RRTVCQY--SGHQGAVRGLTVST-DGRILVSCGTDC 131 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~-~~~~~~~--~~h~~~v~~l~~~~-~~~~l~s~~~dg 131 (452)
..|..|+..| +.+++... +.....+ ......|.+|++.| +...|..++..|
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g 77 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTG 77 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC-
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCC
Confidence 5677888777 55554332 2222221 12345799999998 334455555444
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.23 E-value=28 Score=35.18 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=30.8
Q ss_pred CeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 012994 111 AVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDS 146 (452)
Q Consensus 111 ~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~ 146 (452)
.+.+++..++..++++-+.|+++++|++.+++++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 567778888888999999999999999999876654
No 361
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.08 E-value=19 Score=36.38 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
.+.+++..++..++++-+.|+++|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5677788888899999999999999999999876653
No 362
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=78.07 E-value=36 Score=30.02 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=115.4
Q ss_pred EEEEEeCCCCcceEEEeeCCCcEEEEeCCCC--------ce---EEEeec-CCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 69 ISCMAKNPNYLKGFFSGSMDGDIRLWDIANR--------RT---VCQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 69 V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~--------~~---~~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
|..++... ...+.-..||.|..|-.... .. ...+.. ....+..++.+....+.+....||.|..|
T Consensus 55 i~~i~~G~---~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIGGE---QTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEEET---TEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEeCC---CeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 44444332 44555667888988864321 11 111111 22345556666666677777889999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCeeEEEe-cCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC------------cceecccCC
Q 012994 137 NVPVATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ------------PINSFQWGT 203 (452)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~------------~~~~~~~~~ 203 (452)
-......+..-... ....+...... ...+..++....-.++++.+|.|..|-....- +........
T Consensus 132 G~n~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~ 210 (389)
T 3kci_A 132 GEAEDGKLGHGNRS-PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG 210 (389)
T ss_dssp ECCGGGTTCSSSCC-CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred eCCCCCcCCCCCCc-cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence 65432211110000 00000000000 11344555554445555566778888654311 111111123
Q ss_pred CceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc-------eEEE--eec-ccceEEEccCCCceEEeecCCCeEEEE
Q 012994 204 DTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-------RKVI--MRT-KSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 204 ~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
..|..++..... ...++-..||.|..|-......+ .... ... ....+....-+....++-..++.++.|
T Consensus 211 ~~v~~ia~G~g~-~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~w 289 (389)
T 3kci_A 211 HRVVDIACGSGD-AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTW 289 (389)
T ss_dssp SCEEEEEECCSS-CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CeEEEEEEcCCC-cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEE
Confidence 456677665422 45556678999999965432111 1111 110 000111111123334445678889998
Q ss_pred eCCCcccc-----------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 274 DSRKLDEA-----------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 274 d~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
-.....+. ..+.......|..++... ...+.-..||.|+.|=...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 65432211 111111112355555432 3444456789999997654
No 363
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=76.90 E-value=40 Score=29.95 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=78.6
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC---------ceE--EEeec-CCCCeeEEEEccCCCeEEEEeCCCcEEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANR---------RTV--CQYSG-HQGAVRGLTVSTDGRILVSCGTDCTVKL 135 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~---------~~~--~~~~~-h~~~v~~l~~~~~~~~l~s~~~dg~v~i 135 (452)
.|..++.-.. ..++....++.|+.|-.... ... ..+.. ....|..|+.. ..+.+....||.|..
T Consensus 69 ~i~~va~G~~--ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~ 144 (406)
T 4d9s_A 69 QIVSVTCGAD--HTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQS 144 (406)
T ss_dssp CEEEEEECSS--EEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CEEEEEeCcc--eEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEE
Confidence 5777777654 23333333458999954321 001 11111 22356666654 345566678999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeeEEEe-cCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc-----------eec-ccC
Q 012994 136 WNVPVATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-----------NSF-QWG 202 (452)
Q Consensus 136 wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~~~-~~~ 202 (452)
|-......+....... ...+...... ...+..++......++++.++.+..|-......+ ..+ ...
T Consensus 145 wG~n~~GqLG~g~~~~-~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~ 223 (406)
T 4d9s_A 145 WGRNQNGQLGLGDTED-SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223 (406)
T ss_dssp EECCTTSTTCSSSCCC-EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST
T ss_pred eCCCCCccCCCCCCCC-cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC
Confidence 9765432221110000 0000000000 1145555555555556666678888865432111 001 111
Q ss_pred CCceEEEEECCCCCcEEEEEecCCeEEEEEccC
Q 012994 203 TDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (452)
Q Consensus 203 ~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 235 (452)
...|..++... ...++-..+|.|..|-...
T Consensus 224 ~~~i~~va~G~---~ht~~l~~~G~v~~wG~n~ 253 (406)
T 4d9s_A 224 GEKMSMVACGW---RHTISVSYSGALYTYGWSK 253 (406)
T ss_dssp TCCEEEEEECS---SEEEEEETTCCEEEEECCT
T ss_pred CceEEEEEECC---CcEEEEcCCCCEEEeeCCC
Confidence 24566666543 4455667899999997543
No 364
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=75.53 E-value=44 Score=29.79 Aligned_cols=249 Identities=9% Similarity=0.028 Sum_probs=119.8
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEeCCCCCCCCCCCCCC-CCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEE
Q 012994 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVPVATLTDSDDSTD-NSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIW 188 (452)
Q Consensus 110 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~ 188 (452)
..|..|+.. +.+.+....||.|..|-......+....... ....+... .....+..++......++++.+|.|..|
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~~~~~i~~va~G~~hs~al~~~G~v~~w 151 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLI-DLPGKALCISAGDSHSACLLEDGRVFAW 151 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEEC-CCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEE-cCCCCEEEEEcCcCeEEEEeCCCeEEEE
Confidence 346666554 4566667889999999765432221111110 01112111 1234555666655555666667788888
Q ss_pred eC--CCCCcc----------eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc-----------------
Q 012994 189 NH--NRSQPI----------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA----------------- 239 (452)
Q Consensus 189 d~--~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------- 239 (452)
-. ...-.+ .........|..++... ...++-..||.|..|-......+
T Consensus 152 G~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 152 GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGA---DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp ECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred eCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCC---CeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 75 221111 00111234567776653 45566678999999964332111
Q ss_pred -----eEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce----------eeeCcccceEEEEEcCCCCEE
Q 012994 240 -----RKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC----------VHMGHESAVMDIDYSPTGREF 304 (452)
Q Consensus 240 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~----------~~~~~~~~v~~~~~s~~g~~l 304 (452)
..+..................++....++.++.|-.....+.-. ........|..++... ...
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht 306 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHT 306 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEE
T ss_pred cccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeE
Confidence 01111111111111111222233336788888886543221110 0000123455555432 344
Q ss_pred EEEeCCCeEEEEECCCCc-----------eeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 305 VTGSYDRTIRIFQYNGGR-----------SREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 305 ~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
+.-..||.|+.|=....- ........-...|..++.... +.+.-..||.|+.|-....-++.
T Consensus 307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~~GqLG 379 (423)
T 3mvd_K 307 VILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGVNNQLG 379 (423)
T ss_dssp EEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCTTSCSS
T ss_pred EEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCCCCCCC
Confidence 455678999999653210 011111111125777776543 34444789999999877654443
No 365
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=75.12 E-value=35 Score=28.41 Aligned_cols=157 Identities=5% Similarity=-0.000 Sum_probs=88.3
Q ss_pred CCceEEEEECCC-CCcEEEEEecCCeEEEEEccCCC----CceEEEe--ecccceEEEccCCCceEEeecCCCeEEEEeC
Q 012994 203 TDTVISVRFNPA-EPNVLATTASDRSITLYDLRMSS----PARKVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDS 275 (452)
Q Consensus 203 ~~~i~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 275 (452)
...|..+.. ++ ....++..+.+|.++...+.... -...+.+ ......+.... +...++..+..|.++.+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEh
Confidence 456666644 32 33678899999999999876543 0111111 12222232332 3445777778888888876
Q ss_pred CCccccce-------eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------ceeeeeccCCcCcEEEEEEc
Q 012994 276 RKLDEAKC-------VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG-------RSREIYHTKRMQRVFCVKFS 341 (452)
Q Consensus 276 ~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~s 341 (452)
........ +.......|.++...+++..++..+..|.++...+..- +-...+ ...+.+..+...
T Consensus 145 ~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEe
Confidence 54322110 11122345666655556678888999999998876431 112222 222445555443
Q ss_pred CCCCEEEEeeCCCcEEE--eeccc
Q 012994 342 CDASYVISGSDDTNLRL--WKAKA 363 (452)
Q Consensus 342 ~~~~~l~s~~~dg~i~i--w~~~~ 363 (452)
.+...++..+.+|.+.. ++...
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHHH
Confidence 34445666778888877 77654
No 366
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=73.07 E-value=49 Score=29.15 Aligned_cols=160 Identities=9% Similarity=0.060 Sum_probs=80.3
Q ss_pred ceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc-------eEEE--eec-ccceEEEccCCCceEEeecCCCeEEEEe
Q 012994 205 TVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA-------RKVI--MRT-KSNSISWNPMEPMNFTAANEDCNCYSYD 274 (452)
Q Consensus 205 ~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~d 274 (452)
.+..++++... ...++-..||.|..|-......+ .... ... ....+.-...+....++-..++.++.|-
T Consensus 106 ~~~~v~i~~G~-~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG 184 (389)
T 3kci_A 106 FIKKVAVNSGG-KHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWG 184 (389)
T ss_dssp CEEEEEECTTC-SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ceeEEEECcCC-CeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeC
Confidence 34445555544 56666778999999965431111 0110 110 0001211122334455566788999996
Q ss_pred CCCcccc-----------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----------eee-eeccCCc
Q 012994 275 SRKLDEA-----------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR----------SRE-IYHTKRM 332 (452)
Q Consensus 275 ~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~----------~~~-~~~~~~~ 332 (452)
.....+. ..+.......|..++........+.-..||.|+.|-....- ... .......
T Consensus 185 ~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~ 264 (389)
T 3kci_A 185 KGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG 264 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT
T ss_pred CCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC
Confidence 5432111 11111112346666654433455566779999999654211 111 1111112
Q ss_pred CcEEEEEEcCCCCEEEEeeCCCcEEEeeccccccc
Q 012994 333 QRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQL 367 (452)
Q Consensus 333 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 367 (452)
..|..++... .+.+.-..||.|+.|-....-++
T Consensus 265 ~~v~~v~~G~--~hs~alt~~G~v~~wG~n~~GqL 297 (389)
T 3kci_A 265 LGVVKVECGS--QFSVALTKSGAVYTWGKGDYHRL 297 (389)
T ss_dssp SCEEEEEEET--TEEEEEETTSCEEEEECCGGGTT
T ss_pred CcEEEEeCCC--CEEEEEeCCCeEEEEeCCCCCCC
Confidence 3466666543 34444577999999987654444
No 367
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.09 E-value=26 Score=33.01 Aligned_cols=59 Identities=15% Similarity=0.077 Sum_probs=40.6
Q ss_pred cEEEEEeCCCCcceEEEeeCC------------CcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMD------------GDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSC 127 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~d------------g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~ 127 (452)
..--|+|+|.| ++++.-..+ ..+.+.+..+++....+.++ ..+++.++|+||++.|+..
T Consensus 477 ~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34568899998 655543221 23556676777776666554 4689999999999887765
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=64.78 E-value=73 Score=27.97 Aligned_cols=175 Identities=11% Similarity=0.115 Sum_probs=94.5
Q ss_pred cccEEEEEeCCCCcceEE--EeeC-------------CCcEEEEeCCCC--ceEEEeec------CCCCeeEEEEc---c
Q 012994 66 RDGISCMAKNPNYLKGFF--SGSM-------------DGDIRLWDIANR--RTVCQYSG------HQGAVRGLTVS---T 119 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~--tg~~-------------dg~i~iwd~~~~--~~~~~~~~------h~~~v~~l~~~---~ 119 (452)
--.|..+...+.+ ++-+ +|-. --.|.+||+.+. +.++.+.- ..+.+..+++. |
T Consensus 86 lvsV~~v~iD~~~-rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 86 LTSIYQPVIDDCR-RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSCEEEEEECTTC-EEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred eEEeeEEEEcCCC-cEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 4478888888886 4433 2311 125889999999 88887642 23457888887 2
Q ss_pred C----CCeEEEEe-CCCcEEEEeCCCCCCCCCCCCCCCCCCCeeEEEecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCC
Q 012994 120 D----GRILVSCG-TDCTVKLWNVPVATLTDSDDSTDNSSEPLAVYVWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQ 194 (452)
Q Consensus 120 ~----~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~ 194 (452)
+ +.+++.+. ..+-|.|+|+.+++.-+. . + -.+.++.......+|.-.-|
T Consensus 165 ~~~c~~~~aYItD~~~~gLIVydl~~~~swRv-------------~-~------~~~~pd~~~~~~i~G~~~~~------ 218 (381)
T 3q6k_A 165 KGDCSETFVYITNFLRGALFIYDHKKQDSWNV-------------T-H------PTFKAERPTKFDYGGKEYEF------ 218 (381)
T ss_dssp TTTSCSEEEEEEETTTTEEEEEETTTTEEEEE-------------E-C------GGGSCCSCEEEEETTEEEEE------
T ss_pred CCCCCccEEEEEcCCCCcEEEEECCCCcEEEE-------------c-c------CCCccccCcceEECCEEeEe------
Confidence 2 23444433 467899999987643111 1 1 01233311122222221111
Q ss_pred cceecccCCCceEEEEECCC----CCcEEEEEecCCeEEEEEcc-----CC---CCceEEEeecc-cc--eEEEccCCCc
Q 012994 195 PINSFQWGTDTVISVRFNPA----EPNVLATTASDRSITLYDLR-----MS---SPARKVIMRTK-SN--SISWNPMEPM 259 (452)
Q Consensus 195 ~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~i~d~~-----~~---~~~~~~~~~~~-~~--~~~~~~~~~~ 259 (452)
...+..++++|+ +..+....-... ++|.+. .. ..+..+..... .. ..+..+....
T Consensus 219 --------~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ 288 (381)
T 3q6k_A 219 --------KAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV 288 (381)
T ss_dssp --------CCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE
T ss_pred --------ccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe
Confidence 345888899887 433333333332 344332 22 12222222221 22 3344455667
Q ss_pred eEEeecCCCeEEEEeCCC
Q 012994 260 NFTAANEDCNCYSYDSRK 277 (452)
Q Consensus 260 ~~~~~~~~~~i~~~d~~~ 277 (452)
++++--+...|..|+..+
T Consensus 289 ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 289 IFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEEESSSSEEEEEETTS
T ss_pred EEEEeccCCeEEEEeCCC
Confidence 788888889999999875
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.28 E-value=10 Score=39.34 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=31.2
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccC
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVL 370 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 370 (452)
.+.+++..++..++++-+.|++++||++.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3455667778899999999999999999999987664
No 370
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=64.16 E-value=1.1e+02 Score=29.71 Aligned_cols=190 Identities=9% Similarity=0.115 Sum_probs=98.4
Q ss_pred ecCCCCeEEEe---CC----eEEEEeCCCCCccee-cc-cCCC------ceEEEEECCCCCcEEEEEe----------cC
Q 012994 171 HQWEGDLFATA---GA----QVDIWNHNRSQPINS-FQ-WGTD------TVISVRFNPAEPNVLATTA----------SD 225 (452)
Q Consensus 171 ~~~~~~~~~~~---~~----~i~i~d~~~~~~~~~-~~-~~~~------~i~~~~~~~~~~~~l~~~~----------~d 225 (452)
++|++..++.+ +| .++++|+.+++.+.. +. .... ....++|..++ .++++.. ..
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~-~~~~~~~~~~~~~~~~~~~ 215 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD-TIIFNLVLHKNEITSSLYP 215 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT-EEEECCCCSTTCBCTTSSB
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC-EEEEEeCCCCCCcCcCCCC
Confidence 67777766654 33 499999999877632 22 1001 11334776433 4444321 12
Q ss_pred CeEEEEEccCCCCceEEEeeccc----ceEEEccCCCc----eEEeec---CCCeEEEEeCCCcccc-ceeeeCcccceE
Q 012994 226 RSITLYDLRMSSPARKVIMRTKS----NSISWNPMEPM----NFTAAN---EDCNCYSYDSRKLDEA-KCVHMGHESAVM 293 (452)
Q Consensus 226 g~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~---~~~~i~~~d~~~~~~~-~~~~~~~~~~v~ 293 (452)
..|+.|.+-+......+...... .....++++.. +++..+ ....+++.+....... ..+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDA--- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTC---
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcc---
Confidence 46888877666544444333222 22334555554 344332 2345666665532221 111111111
Q ss_pred EEEEcCCCCEEEEE----------eCCCeEEEEECCCCc-------eee-eeccCCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 294 DIDYSPTGREFVTG----------SYDRTIRIFQYNGGR-------SRE-IYHTKRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 294 ~~~~s~~g~~l~s~----------~~dg~i~iwd~~~~~-------~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
.+..+.++.+++.. ...+.|...|+.++. ... .+.......+..+.|..+ .++++...++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~ 371 (711)
T 4hvt_A 293 TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVV 371 (711)
T ss_dssp EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTE
T ss_pred eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCE
Confidence 12334466555532 246778999987642 111 233333457888999876 56777777764
Q ss_pred --EEEeeccccc
Q 012994 356 --LRLWKAKASE 365 (452)
Q Consensus 356 --i~iw~~~~~~ 365 (452)
|.++++.+++
T Consensus 372 ~~l~~~~~~~g~ 383 (711)
T 4hvt_A 372 AKVVTFTLENEQ 383 (711)
T ss_dssp EEEEEECEETTE
T ss_pred EEEEEEECCCCc
Confidence 6777776664
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.91 E-value=39 Score=31.57 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=43.0
Q ss_pred ccEEEEEeCCCCcceEE-EeeC-----------CCcEEEEeCCCCceEEEeecC-CCCeeEEEEccCCCeEEEEe
Q 012994 67 DGISCMAKNPNYLKGFF-SGSM-----------DGDIRLWDIANRRTVCQYSGH-QGAVRGLTVSTDGRILVSCG 128 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~-tg~~-----------dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~l~s~~ 128 (452)
.....|.|.++| .+.+ +=.. .+.|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G-~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTC-CEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCC-CEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467789999998 6655 3211 225777777778766655543 35799999999999887763
No 372
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=61.50 E-value=38 Score=23.51 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=16.7
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 336 FCVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 336 ~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
..+.+..+|.+++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3567778888777543 4444 787655
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=60.18 E-value=1.4e+02 Score=29.49 Aligned_cols=28 Identities=14% Similarity=0.257 Sum_probs=18.5
Q ss_pred CCCeeEEEEccC-CCeEEEEeCCCcEEEE
Q 012994 109 QGAVRGLTVSTD-GRILVSCGTDCTVKLW 136 (452)
Q Consensus 109 ~~~v~~l~~~~~-~~~l~s~~~dg~v~iw 136 (452)
.+.|.+|+++|. ...++.++..+.|...
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS 42 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRW 42 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEe
Confidence 457999999984 4556666666655433
No 374
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.10 E-value=22 Score=36.85 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeee
Q 012994 291 AVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIY 327 (452)
Q Consensus 291 ~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~ 327 (452)
.+.+++..++..++++-+.|+++|+|++.++.++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4555667778899999999999999999998776553
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=58.12 E-value=18 Score=34.79 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=31.1
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeec
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSG 107 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~ 107 (452)
..|.|+.+. . .++++-+.|.++++||+.+++++....-
T Consensus 222 ~~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--E-RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--T-TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--C-cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 457777664 3 7999999999999999999998877653
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=57.47 E-value=1.4e+02 Score=28.97 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=39.3
Q ss_pred ccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceEEEeecC-------CCCeeEEEEcc-CCCeEEEEe
Q 012994 67 DGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTVCQYSGH-------QGAVRGLTVST-DGRILVSCG 128 (452)
Q Consensus 67 ~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~~~~~~h-------~~~v~~l~~~~-~~~~l~s~~ 128 (452)
+.|..|+++|..+..++.+...|.|..++- .++.-..+..+ ...|.+|++.| +.+.++.+.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 389999999986567777777777766652 34433333222 24699999998 434444443
No 377
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=56.85 E-value=1e+02 Score=27.18 Aligned_cols=287 Identities=13% Similarity=0.090 Sum_probs=136.7
Q ss_pred cccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-c----------eEEEeec-CCCCeeEEEEccCCCeEEEEeCC-Cc
Q 012994 66 RDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-R----------TVCQYSG-HQGAVRGLTVSTDGRILVSCGTD-CT 132 (452)
Q Consensus 66 ~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~~~l~s~~~d-g~ 132 (452)
...|..++.-.. ..+.-..||.|+.|=.... + ....+.. ....|..++...+ +.+....| +.
T Consensus 15 ~~~v~~ia~G~~---hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~--ht~al~~~gg~ 89 (406)
T 4d9s_A 15 PRKVLIISAGAS---HSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGAD--HTVAYSQSGME 89 (406)
T ss_dssp CCCEEEEEECSS---EEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEETTTTE
T ss_pred ccceEEEecCCC---eEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcc--eEEEEECCCCE
Confidence 346777776543 3455566889999964321 1 1111111 1235776666433 33333444 48
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCCCeeEEEe----cCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc-----------e
Q 012994 133 VKLWNVPVATLTDSDDSTDNSSEPLAVYVW----KNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-----------N 197 (452)
Q Consensus 133 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-----------~ 197 (452)
|..|-.........-.. ......... ...+..++......++++.++.|..|-....-.+ .
T Consensus 90 v~~wG~n~~GqLG~g~~----~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~ 165 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNS----SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQ 165 (406)
T ss_dssp EEEEECCGGGTTCSSSC----CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred EEEEcCCCCcCCCCCCC----CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccce
Confidence 99996543221111000 010111110 1145555555555555666678888865432111 0
Q ss_pred ecc-cCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc------eEEE---ee-cccceEEEccCCCceEEeecC
Q 012994 198 SFQ-WGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA------RKVI---MR-TKSNSISWNPMEPMNFTAANE 266 (452)
Q Consensus 198 ~~~-~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~---~~-~~~~~~~~~~~~~~~~~~~~~ 266 (452)
.+. .....|..++... ...++-..||.|..|-......+ .... .. .....+.....+....++-..
T Consensus 166 ~v~~~~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~ 242 (406)
T 4d9s_A 166 KIQAFEGIRIKMVAAGA---EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSY 242 (406)
T ss_dssp ECGGGTTCCEEEEEECS---SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEET
T ss_pred EecccCCCcEEEEecCC---CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcC
Confidence 111 1123566666653 45556678999999975432211 1111 00 000111111223333445567
Q ss_pred CCeEEEEeCCCcccc-----------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCcee-----------
Q 012994 267 DCNCYSYDSRKLDEA-----------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSR----------- 324 (452)
Q Consensus 267 ~~~i~~~d~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~----------- 324 (452)
++.++.|-.....+. ..+.......|..++.. ....+.-..||.|+.|=....-.+
T Consensus 243 ~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p 320 (406)
T 4d9s_A 243 SGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSP 320 (406)
T ss_dssp TCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEE
T ss_pred CCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccC
Confidence 888888865432211 00100112235555543 234444567899999965431110
Q ss_pred eeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 325 EIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 325 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
..........|..++.. ..+.+.-..||.|+.|-....-+++
T Consensus 321 ~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG 362 (406)
T 4d9s_A 321 VQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGTNGQLG 362 (406)
T ss_dssp EEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTC
T ss_pred EEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCCCCccC
Confidence 11111122356666654 3345556679999999876654443
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=53.30 E-value=1.1e+02 Score=26.23 Aligned_cols=148 Identities=7% Similarity=0.018 Sum_probs=83.7
Q ss_pred CcEEEEEecCCeEEEEEccCCCCceE-----EEe--ecccceEEEccCCCceEEeecCCCeEEEEeCC--Cccccce---
Q 012994 216 PNVLATTASDRSITLYDLRMSSPARK-----VIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSR--KLDEAKC--- 283 (452)
Q Consensus 216 ~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~--~~~~~~~--- 283 (452)
...++..+.+|.++...+........ +.. ......+.... ....++..+..|.++.+... .......
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~-~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCS-AGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEEC-TTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEec-CCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 36888999999999998765332211 111 12222222232 33456777788888888766 3321110
Q ss_pred ----eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------eeeeeccCC-cCcEEEEEEcCCCCEEEEee
Q 012994 284 ----VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR-------SREIYHTKR-MQRVFCVKFSCDASYVISGS 351 (452)
Q Consensus 284 ----~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~ 351 (452)
+.......|.++...+++.+|+..+..|.++.-.+..-. -...+.... .+.+..+....+...++..+
T Consensus 188 Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T 267 (327)
T 3uc1_A 188 GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVT 267 (327)
T ss_dssp CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEE
T ss_pred CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEc
Confidence 111233457777666666789999999999888764321 111221111 23455554444455666677
Q ss_pred CCCcEEEeecccc
Q 012994 352 DDTNLRLWKAKAS 364 (452)
Q Consensus 352 ~dg~i~iw~~~~~ 364 (452)
.+|.+.-+....-
T Consensus 268 ~~G~~ir~~~~~i 280 (327)
T 3uc1_A 268 SGGGVIRTAARQV 280 (327)
T ss_dssp GGGCEEEEEGGGS
T ss_pred CCCeEEEEehhhc
Confidence 7888777776543
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.27 E-value=14 Score=35.60 Aligned_cols=37 Identities=16% Similarity=0.391 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCEEEEeeCCCcEEEeecccccccccCCh
Q 012994 334 RVFCVKFSCDASYVISGSDDTNLRLWKAKASEQLGVLHP 372 (452)
Q Consensus 334 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 372 (452)
.|.++.+ +..++++-+.|..+|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 477999999999999999999998876543
No 380
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=46.05 E-value=1.2e+02 Score=27.90 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=43.0
Q ss_pred ceEEEEEcC----CCC--EEEEEeCCCeEEEEECC-CCc-------eeeeecc-CCcCcEEEEEEcCCCCEEEEeeCCCc
Q 012994 291 AVMDIDYSP----TGR--EFVTGSYDRTIRIFQYN-GGR-------SREIYHT-KRMQRVFCVKFSCDASYVISGSDDTN 355 (452)
Q Consensus 291 ~v~~~~~s~----~g~--~l~s~~~dg~i~iwd~~-~~~-------~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~ 355 (452)
..++|+... +++ .++.|+.+|.|.-.-+. .+. .+..+.. ....+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456665543 244 47789999987544332 211 1112222 12368999999999999999998877
Q ss_pred EEE
Q 012994 356 LRL 358 (452)
Q Consensus 356 i~i 358 (452)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 381
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=44.81 E-value=1.4e+02 Score=25.21 Aligned_cols=107 Identities=10% Similarity=0.046 Sum_probs=65.0
Q ss_pred CceEEeecCCCeEEEEeCCCccccc-----eeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCC----c---eee
Q 012994 258 PMNFTAANEDCNCYSYDSRKLDEAK-----CVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGG----R---SRE 325 (452)
Q Consensus 258 ~~~~~~~~~~~~i~~~d~~~~~~~~-----~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~----~---~~~ 325 (452)
...++..+..|.++...+....... .......+.+..+........++..+.+|.+..++...- + -..
T Consensus 114 ~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~ 193 (312)
T 1suu_A 114 DAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC 193 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE
T ss_pred CCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE
Confidence 3456777888888888775442211 111122345555555555567888889999988887531 1 111
Q ss_pred eeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 326 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 326 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
.+.......|.++..-.++..|++.+..|..+...+...
T Consensus 194 ~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 194 GMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp CCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 122222355667666556677888899999998887654
No 382
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=44.28 E-value=48 Score=30.81 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCc----eeeeecc-CCcCcEE-EEEEcCCCCEEEEeeCCCcEEE
Q 012994 291 AVMDIDYSPTG--REFVTGSYDRTIRIFQYNGGR----SREIYHT-KRMQRVF-CVKFSCDASYVISGSDDTNLRL 358 (452)
Q Consensus 291 ~v~~~~~s~~g--~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~~~v~-~~~~s~~~~~l~s~~~dg~i~i 358 (452)
..++|+....+ ..++.|+.+|.|.-..+..+. ....+.. ....+|. .|.+++++.+|+.++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 45666655533 357789999987655554321 2222222 1135785 8999999999999998876665
No 383
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=44.21 E-value=1.8e+02 Score=26.29 Aligned_cols=198 Identities=7% Similarity=0.016 Sum_probs=94.5
Q ss_pred CCeeeeeecCCCCeEEEeCCeEEEEeCC---CCC-------------cceecccCCCceEEEEECCCCCcEEEEEecCCe
Q 012994 164 NSFWAVDHQWEGDLFATAGAQVDIWNHN---RSQ-------------PINSFQWGTDTVISVRFNPAEPNVLATTASDRS 227 (452)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~i~d~~---~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 227 (452)
..+..++....-.++++.+|.|..|-.. .++ +...-......|..++... ...++-..+|.
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~---~hs~alt~~G~ 224 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGK---DHILFLDEEGM 224 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECS---SEEEEEETTSC
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecC---CeEEEEeCCCe
Confidence 3455555555555556666777777641 110 0000011123477777653 45566678999
Q ss_pred EEEEEccCCCCceEE-----------EeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc---------------
Q 012994 228 ITLYDLRMSSPARKV-----------IMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA--------------- 281 (452)
Q Consensus 228 i~i~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------- 281 (452)
|..|-......+-.- ........+.....+....++-..+|.++.|-.....+.
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P 304 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKP 304 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEE
T ss_pred EEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecc
Confidence 999975432211000 000000112211223344555567888888864432111
Q ss_pred ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCceee----------------------e-eccCCcCcEEEE
Q 012994 282 KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRSRE----------------------I-YHTKRMQRVFCV 338 (452)
Q Consensus 282 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~----------------------~-~~~~~~~~v~~~ 338 (452)
..+.......|..++... ..-+.-..||.|+.|=....-.+- . ........|..+
T Consensus 305 ~~v~~~~~~~i~~ia~G~--~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~~v~~I 382 (473)
T 3of7_A 305 KRLALPDNVVIRSIAAGE--HHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSV 382 (473)
T ss_dssp EECCCCTTCCEEEEEECS--SEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSCCEEEE
T ss_pred ccccccCCccEEEEEeCC--CeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCCceEEE
Confidence 111111123455555433 233344668888888653211000 0 001111246666
Q ss_pred EEcCCCCEEEEeeCCCcEEEeecccccccc
Q 012994 339 KFSCDASYVISGSDDTNLRLWKAKASEQLG 368 (452)
Q Consensus 339 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 368 (452)
+.. ....+.-..||.|+.|-....-+++
T Consensus 383 a~G--~~hs~al~~~G~vy~wG~n~~GqLG 410 (473)
T 3of7_A 383 AAG--SHHSVAVAQNGIAYSWGFGETYAVG 410 (473)
T ss_dssp EEC--SSEEEEEETTSCEEEEECCTTCTTC
T ss_pred EeC--CCeEEEEeCCCcEEEeeCCCCCCCC
Confidence 654 3344555789999999876544443
No 384
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=42.85 E-value=1.4e+02 Score=24.44 Aligned_cols=145 Identities=7% Similarity=-0.014 Sum_probs=75.1
Q ss_pred cEEEEEecCCeEEEEEccCCCC-ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCcccc------c--eeeeC
Q 012994 217 NVLATTASDRSITLYDLRMSSP-ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEA------K--CVHMG 287 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~--~~~~~ 287 (452)
..+++.+.+|.|+--....... ...+........+.... ....++..+..|.++.+........ . .+...
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke~D~l~~~~~~~-t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGK-SNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCTTCCEEEEEEEE-TTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCCCCEEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 3455667777777655433211 00111111112222222 2223555667777776655433111 0 01112
Q ss_pred cccceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CceeeeeccCCcCcEEEEEEc-CCCCEEEEeeCCCcEEEe
Q 012994 288 HESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG-------GRSREIYHTKRMQRVFCVKFS-CDASYVISGSDDTNLRLW 359 (452)
Q Consensus 288 ~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~dg~i~iw 359 (452)
....|.++....++.+|+.++..|.++...+.. +.....+. ....+..+... .++..|+..+.+|.+..+
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~--~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCC--TTCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEEC--CCCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566664434567788899999999988743 11111222 22345555554 345578888899998888
Q ss_pred ecccc
Q 012994 360 KAKAS 364 (452)
Q Consensus 360 ~~~~~ 364 (452)
....-
T Consensus 160 ~~~ei 164 (256)
T 1zvt_A 160 PVSDL 164 (256)
T ss_dssp EGGGS
T ss_pred EHHHC
Confidence 87653
No 385
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.62 E-value=1.6e+02 Score=25.01 Aligned_cols=146 Identities=8% Similarity=0.034 Sum_probs=77.1
Q ss_pred cEEEEEecCCeEEEEEccCCC---C-ceEEEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc---------e
Q 012994 217 NVLATTASDRSITLYDLRMSS---P-ARKVIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK---------C 283 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---------~ 283 (452)
.++++.+.+|.|+--.+.... . ...+........+ +.......++..++.|.++.+......... .
T Consensus 6 ~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~-~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~ 84 (323)
T 1wp5_A 6 DVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAM-LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIAN 84 (323)
T ss_dssp EEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEE-EEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGG
T ss_pred cEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEE-EEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhh
Confidence 577888999999887654221 1 0111111111122 222233345566667777666543321111 1
Q ss_pred ee-eCcccceEEE-EEcC--CCCEEEEEeCCCeEEEEECCCC------ceeeeeccCCcCcEEEEEEcCCCCEEEEeeCC
Q 012994 284 VH-MGHESAVMDI-DYSP--TGREFVTGSYDRTIRIFQYNGG------RSREIYHTKRMQRVFCVKFSCDASYVISGSDD 353 (452)
Q Consensus 284 ~~-~~~~~~v~~~-~~s~--~g~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 353 (452)
.+ ......|.++ ...+ ++.+++..+.+|.++-..+..- .-...+.....+.+..+........|+..+.+
T Consensus 85 ~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~ 164 (323)
T 1wp5_A 85 IIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHN 164 (323)
T ss_dssp TSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEETT
T ss_pred ccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCC
Confidence 11 1122345554 3332 2568899999999999877421 11112211222455555555555677788889
Q ss_pred CcEEEeeccc
Q 012994 354 TNLRLWKAKA 363 (452)
Q Consensus 354 g~i~iw~~~~ 363 (452)
|.+..+....
T Consensus 165 G~~irf~~~e 174 (323)
T 1wp5_A 165 GYALWFDESE 174 (323)
T ss_dssp SEEEEEEGGG
T ss_pred CcEEEEEHHH
Confidence 9988887764
No 386
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=37.69 E-value=1.7e+02 Score=24.14 Aligned_cols=108 Identities=6% Similarity=0.001 Sum_probs=66.7
Q ss_pred CCceEEeecCCCeEEEEeCCCcc----ccceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-------ee
Q 012994 257 EPMNFTAANEDCNCYSYDSRKLD----EAKCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGRS-------RE 325 (452)
Q Consensus 257 ~~~~~~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~-------~~ 325 (452)
....++..+.+|.+......... ..........+.+..+........|+..+..|.+..++...-.. ..
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~ 158 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ 158 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE
Confidence 34568888999999988876543 00001011234555555555556788888999988887542111 11
Q ss_pred eeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecccc
Q 012994 326 IYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAKAS 364 (452)
Q Consensus 326 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 364 (452)
.+.......|.++...+++.+++..+..|.++...+...
T Consensus 159 ~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 159 GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 111222355766666666778888999999998877543
No 387
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=34.31 E-value=2.1e+02 Score=24.09 Aligned_cols=146 Identities=8% Similarity=0.033 Sum_probs=77.7
Q ss_pred cEEEEEecCCeEEEEEccCCCCce-----EEEe--ecccceEEEccCCCceEEeecCCCeEEEEeCCCccccce------
Q 012994 217 NVLATTASDRSITLYDLRMSSPAR-----KVIM--RTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAKC------ 283 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~------ 283 (452)
..++..+.+|.++-..+....... .+.. ......+... ++...++..+..|.+..+........-.
T Consensus 110 ~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~ 188 (307)
T 1zi0_A 110 VKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLT-SGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVR 188 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE
T ss_pred cEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEe-CCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeE
Confidence 467788999999999875322211 1111 1222222222 2333466777788887777654322110
Q ss_pred -eeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-------eeeeec-cCCcCcEEEEEEcCCCCEEEEeeCCC
Q 012994 284 -VHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNGGR-------SREIYH-TKRMQRVFCVKFSCDASYVISGSDDT 354 (452)
Q Consensus 284 -~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~-------~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg 354 (452)
+.......|.++...+++..|++.+..|.++-.++..-. -..... ....+.+-.+....+..-|+..+.+|
T Consensus 189 ~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 189 GIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp CCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred eEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 111233456666655556678888999998888763211 111111 11113454444433444455667777
Q ss_pred cEEEeeccc
Q 012994 355 NLRLWKAKA 363 (452)
Q Consensus 355 ~i~iw~~~~ 363 (452)
.+.-+.+..
T Consensus 269 ~~ir~~~~~ 277 (307)
T 1zi0_A 269 TLVRTRVSE 277 (307)
T ss_dssp CEEEEEGGG
T ss_pred cEEEEeccc
Confidence 776666654
No 388
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=33.38 E-value=3.3e+02 Score=26.10 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=41.1
Q ss_pred eEEEEE----cCCCC--EEEEEeCCCeEE-EEECCCCc-------eeeee-ccCCcCcEEEEEEcCCCCEEEEeeCCCcE
Q 012994 292 VMDIDY----SPTGR--EFVTGSYDRTIR-IFQYNGGR-------SREIY-HTKRMQRVFCVKFSCDASYVISGSDDTNL 356 (452)
Q Consensus 292 v~~~~~----s~~g~--~l~s~~~dg~i~-iwd~~~~~-------~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 356 (452)
.+.|+. .++|+ .++.|+.+|.|. +.....+. .+... ......+|..|.++++..+|+.++.++.+
T Consensus 414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~ 493 (667)
T 4gz8_A 414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 493 (667)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence 445554 23454 477899999874 33222211 11111 12234679999999999999999988766
Q ss_pred EE
Q 012994 357 RL 358 (452)
Q Consensus 357 ~i 358 (452)
+|
T Consensus 494 kV 495 (667)
T 4gz8_A 494 QL 495 (667)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 389
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=31.39 E-value=1.3e+02 Score=20.91 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=13.3
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 337 CVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
.+.+..+|++++.. .++. .+|...
T Consensus 64 ~l~l~~dGNLVl~d-~~~~-~lW~S~ 87 (119)
T 1b2p_A 64 RAVLQPDGVLVVIT-NENV-TVWQSP 87 (119)
T ss_dssp EEEECTTSCEEEEC-TTCC-EEEECS
T ss_pred EEEEccCCEEEEEe-CCCc-EEEcCC
Confidence 45666677766653 2333 467654
No 390
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.17 E-value=3.9e+02 Score=25.93 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=52.0
Q ss_pred cceEEEccCCCceEEeecCCCeEEE-EeCCCccc--cceee---eCc-ccceEEEEEcCCCCEEEEEeCCC-eEEEEECC
Q 012994 248 SNSISWNPMEPMNFTAANEDCNCYS-YDSRKLDE--AKCVH---MGH-ESAVMDIDYSPTGREFVTGSYDR-TIRIFQYN 319 (452)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~-~d~~~~~~--~~~~~---~~~-~~~v~~~~~s~~g~~l~s~~~dg-~i~iwd~~ 319 (452)
...+.+.|..+..++.+.. +.++. .|..+... ..... .+. ...+..+...|.+..|+++..|. .++--|+.
T Consensus 385 ~~~l~idp~~~~~~~~g~~-~g~~~s~d~g~w~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~l~~~~~d~g~~~~~d~~ 463 (737)
T 2cn3_A 385 IGDIEIDPFNSDRMMYVTG-ATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSPPEGAPLVSAVGDLVGFVHDDLK 463 (737)
T ss_dssp CCCEEECTTCTTCEEEECS-SCEEEESCGGGGGGTCCEEEEECCTTCBCCBEEEEECCSSSCSEEEEETTTBCCEESSTT
T ss_pred cccEEECCCCCCcEEEeCC-CeEEeecCCCccccCCceeEEEcCCCceeeeeeeEEcCCCCCeeEEEEeccCCeEEcccc
Confidence 3468888888777777754 44433 23221110 00110 011 22345566677777777776554 33333443
Q ss_pred CCceeeeeccCCcCcEEEEEEcCC--CCEEEEeeCCCc
Q 012994 320 GGRSREIYHTKRMQRVFCVKFSCD--ASYVISGSDDTN 355 (452)
Q Consensus 320 ~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~dg~ 355 (452)
..... .+ .........+++..+ ..++++|..|+.
T Consensus 464 ~~~~~-~~-~~~~~~~~~i~~ag~~~~~~v~vG~~dg~ 499 (737)
T 2cn3_A 464 VGPKK-MH-VPSYSSGTGIDYAELVPNFMALVAKADLY 499 (737)
T ss_dssp SCCSS-CS-CTTCSEEEEEEEETTEEEEEEEEEECSSC
T ss_pred cCCcc-cc-CCccccccceeecccCCCeEEEEECcCCC
Confidence 32211 11 222245678888655 245667776664
No 391
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=29.24 E-value=2.7e+02 Score=23.71 Aligned_cols=159 Identities=6% Similarity=0.062 Sum_probs=82.0
Q ss_pred CceEEEEECCC--CCcEEEEEecCCeEEEEEccCCCCce------EEEee--cccceEEEccCCCceEEeecCCCeEEEE
Q 012994 204 DTVISVRFNPA--EPNVLATTASDRSITLYDLRMSSPAR------KVIMR--TKSNSISWNPMEPMNFTAANEDCNCYSY 273 (452)
Q Consensus 204 ~~i~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 273 (452)
..|.++...++ ....++..+.+|.++...+....... .+... .....+... ++...++..+.+|.+..+
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~-~~~~~i~l~T~~G~~irf 170 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLT-DGMNELFLVTHNGYALWF 170 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEE-CSCSEEEEEETTSEEEEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEE
Confidence 34555433332 23567888999999999875332211 11111 222222222 233456777888888888
Q ss_pred eCCCccccce-------eeeCcccceEEEEEcCCCC-EEEEEeCCCeEEEEECCCC-------ceeeeec-c-CCcCcEE
Q 012994 274 DSRKLDEAKC-------VHMGHESAVMDIDYSPTGR-EFVTGSYDRTIRIFQYNGG-------RSREIYH-T-KRMQRVF 336 (452)
Q Consensus 274 d~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~-~-~~~~~v~ 336 (452)
........-. ........|.++..-+++. .|++.+..|..+..++..- +-..... . .....+.
T Consensus 171 ~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~ 250 (323)
T 1wp5_A 171 DESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRIS 250 (323)
T ss_dssp EGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEE
T ss_pred EHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEE
Confidence 7654322111 1112234466665444444 7888888998888776531 1111111 1 1112454
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEeeccc
Q 012994 337 CVKFSCDASYVISGSDDTNLRLWKAKA 363 (452)
Q Consensus 337 ~~~~s~~~~~l~s~~~dg~i~iw~~~~ 363 (452)
.+....++..++..+.+|.+....+..
T Consensus 251 ~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 251 GFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp EEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred EEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 333333344566677778776666654
No 392
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=28.11 E-value=1.8e+02 Score=26.72 Aligned_cols=68 Identities=12% Similarity=0.084 Sum_probs=43.5
Q ss_pred cEEEEEeCCC----C-cceEEEeeCCCcEEEEeCC-CCc-------eEEEee--cCCCCeeEEEEccCCCeEEEEeCCCc
Q 012994 68 GISCMAKNPN----Y-LKGFFSGSMDGDIRLWDIA-NRR-------TVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCT 132 (452)
Q Consensus 68 ~V~~~~~~~~----~-~~~l~tg~~dg~i~iwd~~-~~~-------~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~ 132 (452)
..++|+...- + -..++.|+.+|.|.-.-+. .+. .+..+. ....+|..|.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4666665421 2 2457789999987554432 211 122232 24578999999999999999998876
Q ss_pred EEE
Q 012994 133 VKL 135 (452)
Q Consensus 133 v~i 135 (452)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 393
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=26.90 E-value=1.4e+02 Score=27.62 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=44.1
Q ss_pred ceEEEEEcC-CC-CEEEEEeCCCeEEEEECC-CC--ceeeeeccCCcCcEE-EEEEcCCCCEEEEeeCCCcEEEe
Q 012994 291 AVMDIDYSP-TG-REFVTGSYDRTIRIFQYN-GG--RSREIYHTKRMQRVF-CVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 291 ~v~~~~~s~-~g-~~l~s~~~dg~i~iwd~~-~~--~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
..++|+... +| ..+..|+.+|.|.-.-+. .+ .....+......+|. .|.++++..+|+.++.++.++|-
T Consensus 388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 356666554 22 346789999998654443 21 122222223346774 89999999999999988877763
No 394
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=26.34 E-value=3.4e+02 Score=23.94 Aligned_cols=239 Identities=7% Similarity=-0.013 Sum_probs=114.5
Q ss_pred cEEEEEeCCCCcceEEEeeCCCcEEEEeCCCC-c-----------e-EEEeecCCCCeeEEEEccCCCeEEEEeCCCcEE
Q 012994 68 GISCMAKNPNYLKGFFSGSMDGDIRLWDIANR-R-----------T-VCQYSGHQGAVRGLTVSTDGRILVSCGTDCTVK 134 (452)
Q Consensus 68 ~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~-~-----------~-~~~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~ 134 (452)
.|..|+... ...+.-..||.|+.|-.... + . ...+. ....|..|+... .+.+....||.|.
T Consensus 76 ~v~~va~G~---~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~--~hs~al~~~G~v~ 149 (423)
T 3mvd_K 76 DAVDISAGG---MHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGD--SHSACLLEDGRVF 149 (423)
T ss_dssp SEEEEEECS---SEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECS--SEEEEEETTSCEE
T ss_pred CceEEeeCC---CeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCc--CeEEEEeCCCeEE
Confidence 466666543 44566677999999965321 1 0 11111 234566666543 3555567899999
Q ss_pred EEeC--CC-CCCCCCCCCCCCCCCCeeEE-EecCCeeeeeecCCCCeEEEeCCeEEEEeCCCCCcc--------------
Q 012994 135 LWNV--PV-ATLTDSDDSTDNSSEPLAVY-VWKNSFWAVDHQWEGDLFATAGAQVDIWNHNRSQPI-------------- 196 (452)
Q Consensus 135 iwd~--~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~-------------- 196 (452)
.|-. .. +++-..... ....... .....+..++......++++.+|.|..|-....-.+
T Consensus 150 ~wG~~~n~~GqlG~~~~~----~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 225 (423)
T 3mvd_K 150 AWGSFRDSHGNMGLTIDG----NKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 225 (423)
T ss_dssp EEECEECSSSEEESBTTB----CEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT
T ss_pred EEeCCCCCCCCcCcCCCC----CCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc
Confidence 9975 22 221111000 0000000 112345555555555566666678888865432111
Q ss_pred ---------eecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccCCCCc--------eE-EEeecccceEEEccCCC
Q 012994 197 ---------NSFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRMSSPA--------RK-VIMRTKSNSISWNPMEP 258 (452)
Q Consensus 197 ---------~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------~~-~~~~~~~~~~~~~~~~~ 258 (452)
.........|..++.... ..++.-..+|.|..|-......+ .. .........+.....+.
T Consensus 226 ~~~~~~~p~~v~~~~~~~v~~i~~g~~--~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~ 303 (423)
T 3mvd_K 226 GKRDLLRPTQLIITRAKPFEAIWATNY--CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ 303 (423)
T ss_dssp TTTTTSSCEEECCTTCCCEEEEEEETT--EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS
T ss_pred ccccccCCeEEeecCCccEEEEEECCc--EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc
Confidence 111111234555554421 23333367899999975432111 00 11110011122222233
Q ss_pred ceEEeecCCCeEEEEeCCCcccc-----------ceeeeCcccceEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 259 MNFTAANEDCNCYSYDSRKLDEA-----------KCVHMGHESAVMDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 259 ~~~~~~~~~~~i~~~d~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
...++-..++.++.|-.....+. ......-...|..++.... ..+.-..||.|+.|=...
T Consensus 304 ~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 304 HHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp SEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred CeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 44555567888999865432111 0011111125666665432 333346799999997654
No 395
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.60 E-value=2.3e+02 Score=26.65 Aligned_cols=57 Identities=9% Similarity=-0.006 Sum_probs=37.4
Q ss_pred EEEEEeCCCeEEEEECCCCc----e--eeeecc-CCcCcEEEEEEcCCCCEEEEeeCCCcEEEe
Q 012994 303 EFVTGSYDRTIRIFQYNGGR----S--REIYHT-KRMQRVFCVKFSCDASYVISGSDDTNLRLW 359 (452)
Q Consensus 303 ~l~s~~~dg~i~iwd~~~~~----~--~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 359 (452)
.+..|+.+|.|.-.-+.... . +..+.. ....+|..|.++++...|+.++.++.++|-
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 57789999987644332211 1 111211 233678999999999999999988776663
No 396
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.07 E-value=2.6e+02 Score=26.27 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=38.3
Q ss_pred ceEEEeeCCCcEEEEeCCC-C----c-eEEEee--cCCCCeeEEEEccCCCeEEEEeCCCcEEEE
Q 012994 80 KGFFSGSMDGDIRLWDIAN-R----R-TVCQYS--GHQGAVRGLTVSTDGRILVSCGTDCTVKLW 136 (452)
Q Consensus 80 ~~l~tg~~dg~i~iwd~~~-~----~-~~~~~~--~h~~~v~~l~~~~~~~~l~s~~~dg~v~iw 136 (452)
..++.|+.+|.|.-.-+.. + . .+..+. ....+|..|.++++...|+.++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 4677899999886443322 2 1 122232 245789999999998999999887666653
No 397
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=21.58 E-value=2e+02 Score=19.58 Aligned_cols=56 Identities=11% Similarity=0.145 Sum_probs=27.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCceeeeeccCCcCcEEEEEEcCCCCEEEEeeCCCcEEEeecc
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNGGRSREIYHTKRMQRVFCVKFSCDASYVISGSDDTNLRLWKAK 362 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~ 362 (452)
..+.+..||++++.- .+ -.+|...+... ..-..+.+..+|++++... ++. .+|...
T Consensus 22 ~~l~~~~dGnlvl~~--~~-~~vW~sn~~~~---------~~~~~l~l~~dGNLVl~~~-~~~-~~W~S~ 77 (110)
T 3a0c_A 22 YRLIMQGDCNFVLYD--SG-KPVWASNTGGL---------GSGCRLTLHNNGNLVIYDQ-SNR-VIWQTK 77 (110)
T ss_dssp EEEEECTTSCEEEEE--TT-EEEEECCCTTS---------CSSCEEEECTTSCEEEECT-TCC-EEEECC
T ss_pred EEEEEcCCCcEEEEE--CC-EEEEECCCCCC---------CCcEEEEEeCCCCEEEECC-CCc-EEEecC
Confidence 345556666655543 22 34565543211 1112456667777766543 333 467654
No 398
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=21.47 E-value=4.5e+02 Score=23.67 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=59.9
Q ss_pred CCeeEEEEccCCCeEEEEeCCCcEEEEeCC---CCCCCCCCCCCCCCCCCeeEEEe-cCCeeeeeecCCCCeEEEeCCeE
Q 012994 110 GAVRGLTVSTDGRILVSCGTDCTVKLWNVP---VATLTDSDDSTDNSSEPLAVYVW-KNSFWAVDHQWEGDLFATAGAQV 185 (452)
Q Consensus 110 ~~v~~l~~~~~~~~l~s~~~dg~v~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 185 (452)
..|..|+... ...+....||.|..|-.. .+++-...........+...... ...+..++....-.++++.+|.|
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 4566666543 345555778999999752 22211100000000011111011 12355666655555666667788
Q ss_pred EEEeCCCCCcce-------------ecccCCCceEEEEECCCCCcEEEEEecCCeEEEEEccC
Q 012994 186 DIWNHNRSQPIN-------------SFQWGTDTVISVRFNPAEPNVLATTASDRSITLYDLRM 235 (452)
Q Consensus 186 ~i~d~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 235 (452)
..|-......+. ........|..++... ...++-..+|.|..|-...
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~---~hs~alt~~G~v~~wG~n~ 285 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGE---NHCFALTKDNKLVSWGLNQ 285 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECS---SEEEEEETTSCEEEEEECT
T ss_pred EEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCC---CeEEEEecCCCEEEeCCCC
Confidence 888654421110 0000113566666543 4555666799999997543
No 399
>1ukf_A Avirulence protein AVRPPH3; AVRPPHB, hypersensitive response, hydrolase; 1.35A {Pseudomonas syringae PV} SCOP: d.3.1.10
Probab=21.46 E-value=1.1e+02 Score=23.52 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=30.4
Q ss_pred cccccEEEEEeCCCCcceEEEeeCCCcEEEEeCCCCceE
Q 012994 64 GHRDGISCMAKNPNYLKGFFSGSMDGDIRLWDIANRRTV 102 (452)
Q Consensus 64 ~h~~~V~~~~~~~~~~~~l~tg~~dg~i~iwd~~~~~~~ 102 (452)
.+.+-+.++.|...+...+++.+.+|++.++|.+-|+..
T Consensus 116 ~g~~hllsl~f~~g~aHaia~S~~g~~~tlFDPN~GEF~ 154 (188)
T 1ukf_A 116 SGRKHLLSLRFANVQGHAIACSCEGSQFKLFDPNLGEFQ 154 (188)
T ss_dssp TTCEEEEEEEETTTEEEEEEEEEETTEEEEEETTTEEEE
T ss_pred CCCceEEEEEecCCCceeEEeccCCCeEEEeCCCCceee
Confidence 346667888888766567888888999999999877653
No 400
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=20.51 E-value=3.8e+02 Score=22.51 Aligned_cols=61 Identities=7% Similarity=-0.020 Sum_probs=37.3
Q ss_pred CCCcceEEEeeCCCcEEEEeCCCCce-------EE--EeecCCCCeeEEEEccCCCeEEEEeCCCcEEEEeC
Q 012994 76 PNYLKGFFSGSMDGDIRLWDIANRRT-------VC--QYSGHQGAVRGLTVSTDGRILVSCGTDCTVKLWNV 138 (452)
Q Consensus 76 ~~~~~~l~tg~~dg~i~iwd~~~~~~-------~~--~~~~h~~~v~~l~~~~~~~~l~s~~~dg~v~iwd~ 138 (452)
++. .++++.+.+|.|+--.+...+. +. .+.. ...+..+........++..+..|.+.-...
T Consensus 6 ~~e-~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~ 75 (312)
T 1suu_A 6 QKE-NIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINA 75 (312)
T ss_dssp --C-EEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEG
T ss_pred CCC-CEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEH
Confidence 344 7788999999999887654321 11 1222 234555555555567777888888766554
No 401
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=20.40 E-value=3.8e+02 Score=22.45 Aligned_cols=146 Identities=11% Similarity=0.084 Sum_probs=75.0
Q ss_pred cEEEEEecCCeEEEEEccCCCCceE---------EEeecccceEEEccCCCceEEeecCCCeEEEEeCCCccccc-----
Q 012994 217 NVLATTASDRSITLYDLRMSSPARK---------VIMRTKSNSISWNPMEPMNFTAANEDCNCYSYDSRKLDEAK----- 282 (452)
Q Consensus 217 ~~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~----- 282 (452)
..+++.+.+|.|+--.+........ +........+. ..+....++..++.|.++.+.........
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~-~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLL-VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC--------------------CCEEEEE-EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEE-EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 5677888999998777654322111 11111111222 22233345666667777666543321111
Q ss_pred ----eee-eCcccceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCc-----eeeeeccCCcCcEEEEEEcCCCCEEEE
Q 012994 283 ----CVH-MGHESAVMDIDYS---PTGREFVTGSYDRTIRIFQYNGGR-----SREIYHTKRMQRVFCVKFSCDASYVIS 349 (452)
Q Consensus 283 ----~~~-~~~~~~v~~~~~s---~~g~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~s~~~~~l~s 349 (452)
..+ ......|.++..- .++.+++..+.+|.++--.+..-. -...+.....+.+..+....+...|+.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~i~l 162 (307)
T 1zi0_A 83 RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVML 162 (307)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCEEEE
T ss_pred eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCEEEE
Confidence 011 1223345555432 355678899999999988764211 111111112245555555555556777
Q ss_pred eeCCCcEEEeeccc
Q 012994 350 GSDDTNLRLWKAKA 363 (452)
Q Consensus 350 ~~~dg~i~iw~~~~ 363 (452)
.+.+|.+..++...
T Consensus 163 ~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 163 FSAEGKVVRFKESS 176 (307)
T ss_dssp EETTSEEEEEEGGG
T ss_pred ECCCCcEEEEEHHH
Confidence 88889888887654
No 402
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.35 E-value=2.1e+02 Score=19.53 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=15.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 012994 293 MDIDYSPTGREFVTGSYDRTIRIFQYNG 320 (452)
Q Consensus 293 ~~~~~s~~g~~l~s~~~dg~i~iwd~~~ 320 (452)
..+.+..+|++++... ++.+ +|...+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3466777887766543 4443 676554
Done!