BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012995
(452 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FV2|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
pdb|1FV3|B Chain B, The Hc Fragment Of Tetanus Toxin Complexed With An
Analogue Of Its Ganglioside Receptor Gt1b
Length = 472
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 91 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 150
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 151 SLKGNNLIW 159
>pdb|1D0H|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With N-Acetyl-
Galactosamine
Length = 469
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 88 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 147
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 148 SLKGNNLIW 156
>pdb|1DLL|A Chain A, The Hc Fragement Of Tetanus Toxin Complexed With Lactose
pdb|1YXW|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
pdb|1YYN|A Chain A, A Common Binding Site For Disialyllactose And A
Tri-Peptide In The C-Fragment Of Tetanus Neurotoxin
Length = 441
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 60 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 119
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 120 SLKGNNLIW 128
>pdb|1DIW|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Galactose
Length = 441
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 60 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 119
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 120 SLKGNNLIW 128
>pdb|1A8D|A Chain A, Tetanus Toxin C Fragment
pdb|1AF9|A Chain A, Tetanus Neurotoxin C Fragment
Length = 452
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 71 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 130
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 131 SLKGNNLIW 139
>pdb|1DFQ|A Chain A, The Hc Fragment Of Tetanus Toxin Complexed With Sialic
Acid
Length = 444
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 63 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 122
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 123 SLKGNNLIW 131
>pdb|3HMY|A Chain A, Crystal Structure Of Hcr/t Complexed With Gt2
pdb|3HN1|A Chain A, Crystal Structure Of HcrT COMPLEXED WITH GT2 AND LACTOSE
Length = 450
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 378 VVDSYLDGDCEDFYNPKDAKQDGKTPKIEASS----STRSSSVKPFLRRH-FSLGSKWSR 432
+V +D + D +N + PK+ AS T S+ +++H S+GS WS
Sbjct: 69 IVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSV 128
Query: 433 SVTDNDSVW 441
S+ N+ +W
Sbjct: 129 SLKGNNLIW 137
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 313 VAAVLVCGHVYHAECLEIMTVDTDKYDPACPICV 346
VA VL CGH+ H C E M K CP+C+
Sbjct: 21 VAHVLPCGHLLHRTCYEEML----KEGYRCPLCM 50
>pdb|3JVD|A Chain A, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
pdb|3JVD|B Chain B, Crystal Structure Of Putative Transcription Regulation
Repressor (Laci Family) From Corynebacterium Glutamicum
Length = 333
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 57 GVNRNFSR-EIKGPFDSERGNHSDGGSLEIVGTPSSLKSPVHEEMGASLMTMPSDL 111
GV R F+R ++ P D G + D VG + P HEEMG + + DL
Sbjct: 245 GVMRAFTRLNVRVPHDVVIGGYDDPEWYSFVGAGITTFVPPHEEMGKEAVRLLVDL 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,735,819
Number of Sequences: 62578
Number of extensions: 472724
Number of successful extensions: 865
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 11
length of query: 452
length of database: 14,973,337
effective HSP length: 102
effective length of query: 350
effective length of database: 8,590,381
effective search space: 3006633350
effective search space used: 3006633350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)