BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012995
(452 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P12868|PEP5_YEAST Vacuolar membrane protein PEP5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEP5 PE=1 SV=2
Length = 1029
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 319 CGHVYHAECL--EIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKAEAELRAK 369
CGH+YH CL E T+++++ CP C+V + S K F+A+ E+ K
Sbjct: 944 CGHIYHQHCLNEEEDTLESERKLFKCPKCLVD----LETSNKLFEAQHEVVEK 992
>sp|Q4R5T4|RNF32_MACFA RING finger protein 32 OS=Macaca fascicularis GN=RNF32 PE=2 SV=1
Length = 362
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 290 CSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAEC---LEIMTVDTDKYDPACPIC 345
CS L S QR+GA A+L C HV+H C LE +V ACP+C
Sbjct: 293 CSICLAPLSPAGGQRVGAGQRSRETALLSCSHVFHHACLLALEEFSVGDRPPFHACPLC 351
>sp|Q9H0A6|RNF32_HUMAN RING finger protein 32 OS=Homo sapiens GN=RNF32 PE=1 SV=1
Length = 362
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 290 CSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAEC---LEIMTVDTDKYDPACPIC 345
CS L S+ QR+GA A+L C HV+H C LE +V ACP+C
Sbjct: 293 CSICLAPLSAAGGQRVGAGRRSREMALLSCSHVFHHACLLALEEFSVGDRPPFHACPLC 351
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 33.1 bits (74), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 10/64 (15%)
Query: 319 CGHVYHAECLEIMTVDTDKYDPACPIC------VVGEKQVSKMSRKAFKAEAELRAKYHK 372
CGH +H EC+++ CP+C V +++ K++ A + EAE+R +
Sbjct: 157 CGHGFHVECIDMWL----SSHSTCPLCRSPVLAAVSDEENLKLAVNAVEEEAEVRLQMSP 212
Query: 373 ISRN 376
N
Sbjct: 213 AGEN 216
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 319 CGHVYHAECLEIMTVDTDKYDPACPIC 345
CGHV+H CL+ VD +K CPIC
Sbjct: 104 CGHVFHHRCLDRWIVDCNKI--TCPIC 128
>sp|O14186|YDSB_SCHPO Uncharacterized WD repeat-containing protein C4F8.11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F8.11 PE=4 SV=1
Length = 846
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 310 ELSVAAVLV----CGHVYHAECLEIMTVD-TDKYDPACPICVVGEKQVSK 354
EL + VLV CGH+ H CL D TD P CP+ G K + K
Sbjct: 793 ELPLRGVLVYPPVCGHIGHESCLRSWYFDNTDDALPVCPVPGCGVKLLDK 842
>sp|Q0DGD7|BGAL8_ORYSJ Beta-galactosidase 8 OS=Oryza sativa subsp. japonica
GN=Os05g0539400 PE=2 SV=1
Length = 673
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 91 SLKSPVHEEMGASLMTMPSDLSMASNYSTEVKSMASNYSVEVKNLAESPNIADISTQKLS 150
+L+ +HE G L+ +PS + AS EV+ +AS + V + N++++ +A S Q LS
Sbjct: 359 ALRRVIHECTGIPLLQLPSKIERASYGLVEVQKVASLFDV-IHNISDALKVA-FSEQPLS 416
Query: 151 FSI 153
+
Sbjct: 417 MEL 419
>sp|B3QY21|EFG_CHLT3 Elongation factor G OS=Chloroherpeton thalassium (strain ATCC 35110
/ GB-78) GN=fusA PE=3 SV=1
Length = 705
Score = 32.0 bits (71), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 96 VHEEMGASLMTMPSDLSMASNYSTEVKSMA---SNYSVEVKNLAESP 139
+H+ GA ++ LS YSTE++SM +NYS+E + +E P
Sbjct: 642 MHQRAGAQVIKAKVPLSAMFGYSTELRSMTQGRANYSMEFHDYSEVP 688
>sp|Q95QN6|YQOE_CAEEL Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis
elegans GN=EEED8.16 PE=4 SV=1
Length = 590
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 275 RFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVD 334
R C+ S DL + S + C +R+ SV A+L C H +HA CLE
Sbjct: 237 RIECTTSNDLFSSDDTSLTELPTCAVCLERMDD----SVLAIL-CNHSFHARCLEQWA-- 289
Query: 335 TDKYDPACPIC 345
D CP+C
Sbjct: 290 ----DNTCPVC 296
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,801,044
Number of Sequences: 539616
Number of extensions: 6889749
Number of successful extensions: 18611
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 18567
Number of HSP's gapped (non-prelim): 60
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)