Query 012995
Match_columns 452
No_of_seqs 140 out of 182
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.0 6.9E-11 1.5E-15 85.5 0.9 43 286-346 2-44 (44)
2 PF12678 zf-rbx1: RING-H2 zinc 99.0 2.6E-10 5.7E-15 91.7 2.5 56 283-346 18-73 (73)
3 KOG4628 Predicted E3 ubiquitin 98.6 8.5E-09 1.8E-13 104.9 1.8 45 286-347 231-275 (348)
4 COG5243 HRD1 HRD ubiquitin lig 98.5 3.5E-08 7.7E-13 101.6 2.9 58 283-348 286-343 (491)
5 PHA02929 N1R/p28-like protein; 98.5 8.1E-08 1.8E-12 93.5 3.6 53 283-348 173-225 (238)
6 cd00162 RING RING-finger (Real 98.5 1.1E-07 2.5E-12 65.3 2.9 43 286-347 1-43 (45)
7 PF12861 zf-Apc11: Anaphase-pr 98.4 2.2E-07 4.7E-12 78.5 4.7 60 283-347 20-79 (85)
8 PF13923 zf-C3HC4_2: Zinc fing 98.4 9.8E-08 2.1E-12 67.8 1.6 39 287-345 1-39 (39)
9 smart00184 RING Ring finger. E 98.3 6.1E-07 1.3E-11 59.5 3.2 30 313-345 10-39 (39)
10 KOG0802 E3 ubiquitin ligase [P 98.2 5.3E-07 1.1E-11 95.4 2.1 49 283-347 290-338 (543)
11 PF00097 zf-C3HC4: Zinc finger 98.2 6.1E-07 1.3E-11 63.5 1.6 41 287-345 1-41 (41)
12 PLN03208 E3 ubiquitin-protein 98.2 1.1E-06 2.3E-11 83.8 3.6 57 283-356 17-87 (193)
13 PF15227 zf-C3HC4_4: zinc fing 98.1 1.4E-06 3.1E-11 63.8 2.5 42 287-345 1-42 (42)
14 COG5540 RING-finger-containing 98.1 1E-06 2.2E-11 89.2 2.2 49 283-348 322-370 (374)
15 PF14634 zf-RING_5: zinc-RING 98.1 3.1E-06 6.8E-11 61.8 3.6 43 287-347 2-44 (44)
16 KOG0320 Predicted E3 ubiquitin 98.0 2.6E-06 5.7E-11 80.6 2.9 55 283-356 130-186 (187)
17 PF13920 zf-C3HC4_3: Zinc fing 98.0 2E-06 4.3E-11 63.9 1.4 46 284-350 2-48 (50)
18 smart00504 Ubox Modified RING 98.0 6.8E-06 1.5E-10 62.2 3.7 42 285-347 2-43 (63)
19 TIGR00599 rad18 DNA repair pro 97.9 1.5E-05 3.2E-10 82.9 4.8 46 283-349 25-70 (397)
20 KOG1734 Predicted RING-contain 97.8 7.5E-06 1.6E-10 82.0 1.1 57 282-347 222-278 (328)
21 KOG0827 Predicted E3 ubiquitin 97.7 1.7E-05 3.7E-10 82.5 3.0 50 284-347 4-53 (465)
22 KOG0317 Predicted E3 ubiquitin 97.7 3.4E-05 7.3E-10 77.5 4.4 44 283-347 238-281 (293)
23 PF13445 zf-RING_UBOX: RING-ty 97.7 1.7E-05 3.7E-10 59.1 1.3 43 287-343 1-43 (43)
24 PHA02926 zinc finger-like prot 97.7 4.5E-05 9.8E-10 74.7 4.4 58 283-348 169-228 (242)
25 smart00744 RINGv The RING-vari 97.6 6.1E-05 1.3E-09 57.1 3.3 29 316-346 16-49 (49)
26 COG5194 APC11 Component of SCF 97.5 9.1E-05 2E-09 62.8 3.9 58 285-347 21-78 (88)
27 KOG1493 Anaphase-promoting com 97.4 8.9E-05 1.9E-09 62.4 2.5 59 284-347 20-78 (84)
28 PF04564 U-box: U-box domain; 97.4 0.00022 4.7E-09 57.2 4.5 63 283-366 3-66 (73)
29 KOG0823 Predicted E3 ubiquitin 97.4 6.6E-05 1.4E-09 73.3 1.6 57 282-356 45-103 (230)
30 TIGR00570 cdk7 CDK-activating 97.3 0.0003 6.5E-09 71.3 5.7 73 282-369 1-77 (309)
31 KOG0804 Cytoplasmic Zn-finger 97.3 7.5E-05 1.6E-09 78.8 1.4 47 282-347 173-219 (493)
32 KOG2177 Predicted E3 ubiquitin 97.3 0.00015 3.3E-09 64.2 2.5 45 282-347 11-55 (386)
33 KOG0828 Predicted E3 ubiquitin 97.1 0.00022 4.8E-09 76.2 2.3 54 283-347 570-631 (636)
34 KOG1941 Acetylcholine receptor 97.1 0.00022 4.7E-09 74.7 1.9 51 282-347 363-413 (518)
35 KOG1645 RING-finger-containing 97.1 0.0004 8.7E-09 72.8 3.5 51 283-347 3-53 (463)
36 KOG1940 Zn-finger protein [Gen 97.1 0.00035 7.6E-09 69.9 3.0 55 286-358 160-214 (276)
37 PF10367 Vps39_2: Vacuolar sor 97.0 0.00013 2.9E-09 59.8 -0.4 32 283-329 77-108 (109)
38 PF11793 FANCL_C: FANCL C-term 97.0 9.9E-05 2.1E-09 59.5 -1.7 54 284-348 2-64 (70)
39 KOG2164 Predicted E3 ubiquitin 96.7 0.00069 1.5E-08 72.5 2.1 47 284-347 186-233 (513)
40 COG5574 PEX10 RING-finger-cont 96.7 0.00097 2.1E-08 66.6 2.8 51 276-347 208-259 (271)
41 KOG2930 SCF ubiquitin ligase, 96.7 0.00095 2.1E-08 59.1 2.0 63 281-347 43-105 (114)
42 KOG0287 Postreplication repair 96.6 0.00097 2.1E-08 69.0 1.8 46 283-349 22-67 (442)
43 KOG2114 Vacuolar assembly/sort 96.4 0.0028 6E-08 71.4 4.1 86 275-384 832-922 (933)
44 KOG0825 PHD Zn-finger protein 96.1 0.0014 3.1E-08 73.2 0.2 47 283-347 122-168 (1134)
45 KOG0978 E3 ubiquitin ligase in 95.9 0.0037 8E-08 69.3 1.9 45 283-347 642-686 (698)
46 PF11789 zf-Nse: Zinc-finger o 95.8 0.0044 9.6E-08 48.6 1.6 45 282-344 9-53 (57)
47 KOG3970 Predicted E3 ubiquitin 95.8 0.011 2.5E-07 58.6 4.5 50 285-349 51-104 (299)
48 PF04641 Rtf2: Rtf2 RING-finge 95.5 0.012 2.6E-07 57.5 3.7 57 282-356 111-169 (260)
49 KOG3039 Uncharacterized conser 95.4 0.0073 1.6E-07 60.5 1.7 60 283-359 220-281 (303)
50 COG5222 Uncharacterized conser 95.3 0.019 4E-07 59.1 4.2 47 283-348 273-319 (427)
51 COG5432 RAD18 RING-finger-cont 95.2 0.017 3.7E-07 59.1 3.8 44 283-347 24-67 (391)
52 COG5219 Uncharacterized conser 94.7 0.015 3.2E-07 66.7 1.8 53 283-347 1468-1520(1525)
53 COG5152 Uncharacterized conser 94.7 0.023 4.9E-07 55.7 2.7 45 285-350 197-241 (259)
54 KOG4172 Predicted E3 ubiquitin 94.5 0.016 3.5E-07 46.6 1.2 50 285-356 8-60 (62)
55 KOG1039 Predicted E3 ubiquitin 94.3 0.026 5.6E-07 58.3 2.4 59 282-350 159-221 (344)
56 KOG0824 Predicted E3 ubiquitin 93.9 0.034 7.4E-07 56.9 2.3 62 282-364 5-66 (324)
57 KOG0827 Predicted E3 ubiquitin 93.8 0.0079 1.7E-07 63.3 -2.5 48 283-347 195-242 (465)
58 KOG1785 Tyrosine kinase negati 93.6 0.034 7.3E-07 59.0 1.7 54 283-355 368-421 (563)
59 KOG0311 Predicted E3 ubiquitin 93.5 0.022 4.8E-07 59.3 0.1 46 283-347 42-87 (381)
60 KOG2034 Vacuolar sorting prote 93.4 0.037 8E-07 62.9 1.7 35 283-332 816-850 (911)
61 KOG1428 Inhibitor of type V ad 93.2 0.074 1.6E-06 63.5 3.7 37 313-349 3501-3543(3738)
62 KOG4265 Predicted E3 ubiquitin 92.8 0.069 1.5E-06 55.5 2.4 52 283-355 289-341 (349)
63 PF12906 RINGv: RING-variant d 92.6 0.028 6E-07 42.4 -0.5 28 316-345 15-47 (47)
64 KOG4159 Predicted E3 ubiquitin 92.2 0.075 1.6E-06 55.9 1.8 46 283-349 83-128 (398)
65 PF05883 Baculo_RING: Baculovi 91.9 0.12 2.5E-06 47.5 2.6 35 284-332 26-66 (134)
66 KOG1813 Predicted E3 ubiquitin 91.7 0.084 1.8E-06 54.0 1.6 67 283-376 240-306 (313)
67 KOG2879 Predicted E3 ubiquitin 91.6 0.12 2.6E-06 52.5 2.6 50 282-349 237-286 (298)
68 KOG4185 Predicted E3 ubiquitin 91.6 0.22 4.8E-06 48.6 4.2 53 283-349 2-54 (296)
69 KOG4445 Uncharacterized conser 91.3 0.076 1.7E-06 54.7 0.7 36 283-332 114-149 (368)
70 KOG0297 TNF receptor-associate 90.6 0.16 3.6E-06 52.7 2.4 47 283-349 20-66 (391)
71 PHA02862 5L protein; Provision 88.9 0.42 9.1E-06 44.9 3.4 44 285-348 3-51 (156)
72 COG5236 Uncharacterized conser 88.7 0.28 6E-06 51.7 2.4 48 281-347 58-105 (493)
73 KOG3800 Predicted E3 ubiquitin 88.5 0.65 1.4E-05 47.6 4.7 41 316-359 20-63 (300)
74 PHA02825 LAP/PHD finger-like p 88.0 0.56 1.2E-05 44.4 3.6 48 281-348 5-57 (162)
75 KOG4739 Uncharacterized protei 87.3 0.29 6.3E-06 48.5 1.4 46 282-348 1-46 (233)
76 PF14835 zf-RING_6: zf-RING of 85.2 0.23 5E-06 40.8 -0.4 45 283-349 6-50 (65)
77 KOG1829 Uncharacterized conser 85.0 0.46 1E-05 52.4 1.7 49 283-347 510-558 (580)
78 KOG1002 Nucleotide excision re 84.7 0.9 2E-05 50.2 3.6 50 283-349 535-585 (791)
79 KOG1571 Predicted E3 ubiquitin 82.7 0.65 1.4E-05 48.6 1.6 44 283-350 304-347 (355)
80 KOG2066 Vacuolar assembly/sort 82.5 0.48 1E-05 53.8 0.6 49 284-347 784-832 (846)
81 KOG1814 Predicted E3 ubiquitin 82.4 1.9 4.2E-05 46.1 4.9 69 283-365 183-255 (445)
82 COG5175 MOT2 Transcriptional r 81.0 2.5 5.5E-05 44.7 5.1 86 283-384 13-102 (480)
83 PF14447 Prok-RING_4: Prokaryo 80.8 0.51 1.1E-05 37.7 0.0 30 313-348 19-48 (55)
84 PF04710 Pellino: Pellino; In 77.8 0.71 1.5E-05 49.0 0.0 73 284-356 328-410 (416)
85 smart00249 PHD PHD zinc finger 77.1 1.3 2.9E-05 30.5 1.2 28 318-345 19-47 (47)
86 KOG4275 Predicted E3 ubiquitin 74.9 0.51 1.1E-05 48.7 -1.9 48 283-356 299-348 (350)
87 KOG3113 Uncharacterized conser 74.5 3.4 7.4E-05 42.1 3.7 46 283-347 110-155 (293)
88 PF14570 zf-RING_4: RING/Ubox 74.4 3.1 6.7E-05 32.4 2.7 44 287-348 1-46 (48)
89 PF05290 Baculo_IE-1: Baculovi 74.3 3.2 6.9E-05 38.6 3.2 57 283-353 79-135 (140)
90 PF08746 zf-RING-like: RING-li 73.5 2.1 4.6E-05 31.9 1.6 26 318-345 18-43 (43)
91 KOG3842 Adaptor protein Pellin 73.4 2.5 5.4E-05 44.3 2.5 73 283-356 340-423 (429)
92 PHA03096 p28-like protein; Pro 72.8 2.7 5.8E-05 42.7 2.6 52 285-347 179-231 (284)
93 KOG0309 Conserved WD40 repeat- 71.7 2.1 4.6E-05 49.0 1.7 25 316-344 1045-1069(1081)
94 KOG4692 Predicted E3 ubiquitin 71.1 2.6 5.7E-05 44.8 2.1 50 280-351 418-468 (489)
95 KOG3268 Predicted E3 ubiquitin 70.7 4 8.8E-05 39.9 3.1 35 315-349 186-227 (234)
96 KOG2660 Locus-specific chromos 69.5 2.9 6.2E-05 43.6 2.0 45 283-347 14-58 (331)
97 PF07800 DUF1644: Protein of u 69.2 4.2 9.1E-05 38.7 2.8 17 339-355 80-96 (162)
98 PF13901 DUF4206: Domain of un 68.7 2.6 5.6E-05 40.2 1.4 47 283-347 151-197 (202)
99 KOG3161 Predicted E3 ubiquitin 68.3 2.6 5.7E-05 47.5 1.5 55 282-356 9-64 (861)
100 KOG1812 Predicted E3 ubiquitin 68.1 5.6 0.00012 41.7 3.8 73 283-368 145-223 (384)
101 KOG2932 E3 ubiquitin ligase in 66.3 2.4 5.1E-05 44.3 0.6 45 283-349 89-133 (389)
102 cd00350 rubredoxin_like Rubred 64.8 1.6 3.4E-05 30.7 -0.6 11 340-350 18-28 (33)
103 KOG1001 Helicase-like transcri 63.0 4.9 0.00011 45.2 2.3 43 285-347 455-497 (674)
104 KOG0269 WD40 repeat-containing 61.9 4.4 9.5E-05 46.3 1.7 26 318-347 798-825 (839)
105 KOG0298 DEAD box-containing he 61.5 4.3 9.4E-05 48.7 1.7 45 283-347 1152-1196(1394)
106 COG5220 TFB3 Cdk activating ki 59.6 7.2 0.00015 39.8 2.6 51 282-347 8-61 (314)
107 KOG1952 Transcription factor N 58.8 6.3 0.00014 45.7 2.3 56 282-350 189-247 (950)
108 PF14446 Prok-RING_1: Prokaryo 57.4 7 0.00015 31.2 1.7 37 283-332 4-40 (54)
109 KOG2817 Predicted E3 ubiquitin 57.2 6.9 0.00015 41.7 2.1 34 313-347 349-382 (394)
110 PF05605 zf-Di19: Drought indu 54.8 12 0.00026 28.5 2.5 14 283-296 1-14 (54)
111 KOG1609 Protein involved in mR 52.8 11 0.00024 36.4 2.6 49 284-347 78-131 (323)
112 KOG3053 Uncharacterized conser 51.3 20 0.00043 36.9 4.2 66 280-358 16-91 (293)
113 KOG1100 Predicted E3 ubiquitin 49.9 4.6 0.0001 39.1 -0.5 28 313-348 170-198 (207)
114 KOG2068 MOT2 transcription fac 47.6 14 0.0003 38.6 2.5 48 285-349 250-297 (327)
115 KOG4367 Predicted Zn-finger pr 46.6 12 0.00027 40.9 2.0 34 283-333 3-36 (699)
116 KOG0801 Predicted E3 ubiquitin 46.3 6.4 0.00014 38.1 -0.1 29 283-325 176-204 (205)
117 PF14569 zf-UDP: Zinc-binding 40.2 32 0.00069 29.6 3.1 56 282-350 7-62 (80)
118 PF04710 Pellino: Pellino; In 37.3 11 0.00024 40.4 0.0 32 313-347 303-336 (416)
119 PF00628 PHD: PHD-finger; Int 35.9 2.2 4.8E-05 31.3 -3.9 29 318-346 19-49 (51)
120 KOG4185 Predicted E3 ubiquitin 35.8 9.9 0.00021 37.3 -0.6 51 283-347 206-264 (296)
121 COG5183 SSM4 Protein involved 35.3 31 0.00068 40.4 3.0 48 283-347 11-63 (1175)
122 COG5109 Uncharacterized conser 31.4 27 0.00058 37.0 1.6 32 315-347 353-384 (396)
123 KOG0825 PHD Zn-finger protein 29.1 16 0.00034 42.5 -0.5 51 281-347 212-265 (1134)
124 PF10272 Tmpp129: Putative tra 29.0 44 0.00095 35.4 2.7 29 319-347 311-348 (358)
125 PF15353 HECA: Headcase protei 28.7 33 0.00072 30.9 1.5 16 318-333 39-54 (107)
126 PF04423 Rad50_zn_hook: Rad50 27.1 54 0.0012 25.0 2.3 22 326-347 7-28 (54)
127 PF12088 DUF3565: Protein of u 26.5 27 0.00058 28.7 0.5 19 310-328 8-26 (61)
128 TIGR01643 YD_repeat_2x YD repe 26.2 27 0.0006 24.5 0.5 16 32-47 17-32 (42)
129 KOG4718 Non-SMC (structural ma 25.4 40 0.00086 33.9 1.6 45 283-347 180-224 (235)
130 PF11571 Med27: Mediator compl 23.8 24 0.00052 29.8 -0.2 34 283-327 53-89 (90)
131 cd03019 DsbA_DsbA DsbA family, 23.1 35 0.00075 29.9 0.6 19 338-356 23-41 (178)
132 cd04718 BAH_plant_2 BAH, or Br 22.5 24 0.00052 33.2 -0.5 25 323-347 2-26 (148)
133 PF06676 DUF1178: Protein of u 22.5 18 0.00038 33.9 -1.4 26 318-348 9-41 (148)
134 PF10571 UPF0547: Uncharacteri 21.3 39 0.00086 23.1 0.5 9 286-294 2-10 (26)
135 KOG2079 Vacuolar assembly/sort 20.8 58 0.0013 39.2 1.9 42 279-333 1128-1169(1206)
136 PLN02189 cellulose synthase 20.6 66 0.0014 38.5 2.3 57 281-350 31-87 (1040)
137 KOG3899 Uncharacterized conser 20.5 68 0.0015 33.8 2.2 30 318-347 324-362 (381)
138 PLN02436 cellulose synthase A 20.2 67 0.0014 38.6 2.3 58 281-351 33-90 (1094)
139 cd00730 rubredoxin Rubredoxin; 20.1 84 0.0018 24.5 2.1 13 285-297 2-14 (50)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.02 E-value=6.9e-11 Score=85.47 Aligned_cols=43 Identities=28% Similarity=0.766 Sum_probs=34.6
Q ss_pred ccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995 286 ACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICV 346 (452)
Q Consensus 286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~ 346 (452)
.|+||.+.|... ..+.+|+|||+||.+||.+|+... ..||+|+
T Consensus 2 ~C~IC~~~~~~~--------------~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDG--------------EKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTT--------------SCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCC--------------CeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 699999998642 345688999999999999999753 5899996
No 2
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.96 E-value=2.6e-10 Score=91.75 Aligned_cols=56 Identities=21% Similarity=0.512 Sum_probs=37.9
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICV 346 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~ 346 (452)
....|+||...|....+- .-.+++--.++..+|||+||..||++|+... .+||+|+
T Consensus 18 ~~d~C~IC~~~l~~~~~~----~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPE----CQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCC----HHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cCCcccccChhhhChhhh----hcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 344599999999553221 1112233355777999999999999999633 4899996
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.5e-09 Score=104.94 Aligned_cols=45 Identities=24% Similarity=0.682 Sum_probs=38.3
Q ss_pred ccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 286 ACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+|.||.++|... +.+.+|||+|.||..|++.|+.+. .-.||+|+.
T Consensus 231 ~CaIClEdY~~G--------------dklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~ 275 (348)
T KOG4628|consen 231 TCAICLEDYEKG--------------DKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKR 275 (348)
T ss_pred eEEEeecccccC--------------CeeeEecCCCchhhccchhhHhhc---CccCCCCCC
Confidence 899999999752 367889999999999999999743 246999998
No 4
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.5e-08 Score=101.59 Aligned_cols=58 Identities=22% Similarity=0.529 Sum_probs=42.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
++..|.||.+.+-+.. -+..-++-|+ ....|||||.+|.+||..|+.++ -+||||+..
T Consensus 286 ~D~~C~ICmde~~h~~---~~~~~~~~~~-~pKrLpCGHilHl~CLknW~ERq----QTCPICr~p 343 (491)
T COG5243 286 SDRTCTICMDEMFHPD---HEPLPRGLDM-TPKRLPCGHILHLHCLKNWLERQ----QTCPICRRP 343 (491)
T ss_pred CCCeEEEecccccCCC---CccCcccccC-CcccccccceeeHHHHHHHHHhc----cCCCcccCc
Confidence 6778999998865431 1222233344 45678999999999999999754 489999985
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.49 E-value=8.1e-08 Score=93.48 Aligned_cols=53 Identities=21% Similarity=0.637 Sum_probs=37.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
....|+||.+.+.++.. .+...+.+++|||+||.+||.+|+.. .+.||+|+..
T Consensus 173 ~~~eC~ICle~~~~~~~---------~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEI---------KNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCcc---------ccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCCE
Confidence 35789999998754310 01112334579999999999999863 4689999973
No 6
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.47 E-value=1.1e-07 Score=65.28 Aligned_cols=43 Identities=28% Similarity=0.733 Sum_probs=33.3
Q ss_pred ccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 286 ACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|+||.+.+.. .+.+++|||.||.+||+.|+.. ....||+|+.
T Consensus 1 ~C~iC~~~~~~----------------~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 1 ECPICLEEFRE----------------PVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCCcCchhhhC----------------ceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 48999887621 3445679999999999999864 2367999986
No 7
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.44 E-value=2.2e-07 Score=78.52 Aligned_cols=60 Identities=17% Similarity=0.369 Sum_probs=42.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|+||...|..--| + -.-++|.-.+..-.|+|.||..||.+|+.... ....||+|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp---~-Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCP---D-CKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCC---C-ccCCCCCCceeeccCccHHHHHHHHHHHcccc-CCCCCCCcCC
Confidence 37789999999975322 1 11233433444557999999999999997643 3469999996
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.41 E-value=9.8e-08 Score=67.83 Aligned_cols=39 Identities=36% Similarity=0.918 Sum_probs=30.9
Q ss_pred cccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
|+||.+.+.+ ++.+++|||+|..+|+++|+.. + +.||+|
T Consensus 1 C~iC~~~~~~----------------~~~~~~CGH~fC~~C~~~~~~~-~---~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD----------------PVVVTPCGHSFCKECIEKYLEK-N---PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS----------------EEEECTTSEEEEHHHHHHHHHC-T---SB-TTT
T ss_pred CCCCCCcccC----------------cCEECCCCCchhHHHHHHHHHC-c---CCCcCC
Confidence 8999888742 4568899999999999999975 2 689998
No 9
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.29 E-value=6.1e-07 Score=59.52 Aligned_cols=30 Identities=33% Similarity=0.802 Sum_probs=24.3
Q ss_pred cceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 313 VAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 313 vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
...+++|||+||.+|++.|+.. ....||+|
T Consensus 10 ~~~~~~C~H~~c~~C~~~~~~~---~~~~CP~C 39 (39)
T smart00184 10 DPVVLPCGHTFCRSCIRKWLKS---GNNTCPIC 39 (39)
T ss_pred CcEEecCCChHHHHHHHHHHHh---CcCCCCCC
Confidence 3557899999999999999862 23579998
No 10
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5.3e-07 Score=95.40 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=40.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.||.+.|... +-.++..|+|||+||..||.+|+.. +..||+|+.
T Consensus 290 ~~~~C~IC~e~l~~~------------~~~~~~rL~C~Hifh~~CL~~W~er----~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSG------------HNITPKRLPCGHIFHDSCLRSWFER----QQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccc------------cccccceeecccchHHHHHHHHHHH----hCcCCcchh
Confidence 377899999998642 1135778999999999999999975 358999998
No 11
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.19 E-value=6.1e-07 Score=63.47 Aligned_cols=41 Identities=27% Similarity=0.767 Sum_probs=32.8
Q ss_pred cccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
|+||.+.+... +.+++|||.|+.+||.+|+... ....||+|
T Consensus 1 C~iC~~~~~~~----------------~~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP----------------VILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE----------------EEETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCccccCC----------------CEEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 88999887542 2578999999999999999742 33679998
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.19 E-value=1.1e-06 Score=83.75 Aligned_cols=57 Identities=21% Similarity=0.571 Sum_probs=40.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC------------CCCCCCCCCcccCc-
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT------------DKYDPACPICVVGE- 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~------------~~~dp~CPIC~~ge- 349 (452)
....|+||.+.++. ..+++|||+|+..||.+|+... .+..+.||+|+...
T Consensus 17 ~~~~CpICld~~~d-----------------PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVRD-----------------PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCCC-----------------cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 56789999987632 2357899999999999997421 12347899999844
Q ss_pred -chhhhhh
Q 012995 350 -KQVSKMS 356 (452)
Q Consensus 350 -K~~~kL~ 356 (452)
....+++
T Consensus 80 ~~~LvPiy 87 (193)
T PLN03208 80 EATLVPIY 87 (193)
T ss_pred hhcEEEee
Confidence 3344444
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.13 E-value=1.4e-06 Score=63.83 Aligned_cols=42 Identities=31% Similarity=0.751 Sum_probs=30.9
Q ss_pred cccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
|+||.+.|++. ..|+|||+|=..||++|..+.+..+..||+|
T Consensus 1 CpiC~~~~~~P-----------------v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP-----------------VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE-----------------EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc-----------------cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999998642 3589999999999999987765555789998
No 14
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1e-06 Score=89.16 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=39.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
-+.-|.||...+.. +| .+.||||-|+||.-|+++|+.. +...||+|+..
T Consensus 322 ~GveCaICms~fiK------------~d--~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCrt~ 370 (374)
T COG5540 322 KGVECAICMSNFIK------------ND--RLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCRTA 370 (374)
T ss_pred CCceEEEEhhhhcc------------cc--eEEEeccCceechhHHHHHHhh---hcccCCccCCC
Confidence 44679999988742 23 4789999999999999999862 45689999974
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.09 E-value=3.1e-06 Score=61.80 Aligned_cols=43 Identities=28% Similarity=0.711 Sum_probs=34.1
Q ss_pred cccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
|+||.+.|.. .....+|.|||+|..+|++++.. .+..||+|++
T Consensus 2 C~~C~~~~~~--------------~~~~~l~~CgH~~C~~C~~~~~~----~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSE--------------ERRPRLTSCGHIFCEKCLKKLKG----KSVKCPICRK 44 (44)
T ss_pred CcCcCccccC--------------CCCeEEcccCCHHHHHHHHhhcC----CCCCCcCCCC
Confidence 8999998832 12356889999999999999982 3468999984
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.6e-06 Score=80.55 Aligned_cols=55 Identities=25% Similarity=0.584 Sum_probs=42.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc--Ccchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV--GEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~--geK~~~kL~ 356 (452)
..+.|+||...++++.|. .-.|||||--+|++..+... ..||+|++ .+|+++.+|
T Consensus 130 ~~~~CPiCl~~~sek~~v---------------sTkCGHvFC~~Cik~alk~~----~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPV---------------STKCGHVFCSQCIKDALKNT----NKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhcccc---------------ccccchhHHHHHHHHHHHhC----CCCCCcccccchhhheecc
Confidence 447899999999987442 23899999999999998654 57999996 445555443
No 17
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.02 E-value=2e-06 Score=63.91 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=35.4
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
...|.||.+... .+.++||||. |..+|+++|+. ....||+|+...+
T Consensus 2 ~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPR-----------------DVVLLPCGHLCFCEECAERLLK----RKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBS-----------------SEEEETTCEEEEEHHHHHHHHH----TTSBBTTTTBB-S
T ss_pred cCCCccCCccCC-----------------ceEEeCCCChHHHHHHhHHhcc----cCCCCCcCChhhc
Confidence 457999988642 3567899999 99999999986 3468999998543
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.98 E-value=6.8e-06 Score=62.18 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=34.8
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..|+||.+.++. + .+++|||+|-.+|+++|+.+ +..||+|+.
T Consensus 2 ~~Cpi~~~~~~~---------------P--v~~~~G~v~~~~~i~~~~~~----~~~cP~~~~ 43 (63)
T smart00504 2 FLCPISLEVMKD---------------P--VILPSGQTYERRAIEKWLLS----HGTDPVTGQ 43 (63)
T ss_pred cCCcCCCCcCCC---------------C--EECCCCCEEeHHHHHHHHHH----CCCCCCCcC
Confidence 469999999753 2 35699999999999999964 468999997
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=1.5e-05 Score=82.90 Aligned_cols=46 Identities=22% Similarity=0.691 Sum_probs=37.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ++ +++|||.|+..|+..|+.. ...||+|+...
T Consensus 25 ~~l~C~IC~d~~~~---------------Pv--itpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~ 70 (397)
T TIGR00599 25 TSLRCHICKDFFDV---------------PV--LTSCSHTFCSLCIRRCLSN----QPKCPLCRAED 70 (397)
T ss_pred cccCCCcCchhhhC---------------cc--CCCCCCchhHHHHHHHHhC----CCCCCCCCCcc
Confidence 56789999998853 22 5799999999999999964 24799999844
No 20
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=7.5e-06 Score=81.96 Aligned_cols=57 Identities=21% Similarity=0.507 Sum_probs=41.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.++..|.+|.+.|...- ..+ +-++..-.|.|+||||+.|+.-|.-.+++ ++||.|+.
T Consensus 222 l~d~vCaVCg~~~~~s~--~ee-----gvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKe 278 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV--DEE-----GVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKE 278 (328)
T ss_pred CCcchhHhhcchheeec--chh-----hhhhhheeeecccchHHHhhhhheeecCC--CCCchHHH
Confidence 37788999988875421 011 12234567999999999999999766654 58999996
No 21
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.7e-05 Score=82.51 Aligned_cols=50 Identities=26% Similarity=0.686 Sum_probs=35.4
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
...|.||..... ++-.+.++=.|||+||..||.||+...... ..||+|+.
T Consensus 4 ~A~C~Ic~d~~p-------------~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~i 53 (465)
T KOG0827|consen 4 MAECHICIDGRP-------------NDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQI 53 (465)
T ss_pred cceeeEeccCCc-------------cccccccccchhhHHHHHHHHHHHccCCcc-CCCCceee
Confidence 457999955532 333344555699999999999999744321 36999994
No 22
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=3.4e-05 Score=77.46 Aligned_cols=44 Identities=20% Similarity=0.624 Sum_probs=35.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
...+|.||.+.-.. ....||||+|-..||..|+.+.+ .||+|+.
T Consensus 238 a~~kC~LCLe~~~~-----------------pSaTpCGHiFCWsCI~~w~~ek~----eCPlCR~ 281 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN-----------------PSATPCGHIFCWSCILEWCSEKA----ECPLCRE 281 (293)
T ss_pred CCCceEEEecCCCC-----------------CCcCcCcchHHHHHHHHHHcccc----CCCcccc
Confidence 45789999987532 23569999999999999998763 5999997
No 23
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.66 E-value=1.7e-05 Score=59.11 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=22.9
Q ss_pred cccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCC
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACP 343 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CP 343 (452)
|+||.+ +... .....+|+|||+|-.+||++++.........||
T Consensus 1 CpIc~e-~~~~-------------~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTE-------------ENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TT-------------SS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCC-------------CCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899998 6432 123457999999999999999975533346687
No 24
>PHA02926 zinc finger-like protein; Provisional
Probab=97.65 E-value=4.5e-05 Score=74.65 Aligned_cols=58 Identities=21% Similarity=0.554 Sum_probs=38.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC--CCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD--KYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~--~~dp~CPIC~~g 348 (452)
....|+||.+.+-++.. .+|---.-+.+|+|+|+..|+.+|....+ .....||+|+..
T Consensus 169 kE~eCgICmE~I~eK~~--------~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 169 KEKECGICYEVVYSKRL--------ENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCCCCccCccccccccc--------cccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 45789999988755411 01111122348999999999999985321 112469999973
No 25
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.58 E-value=6.1e-05 Score=57.11 Aligned_cols=29 Identities=34% Similarity=0.713 Sum_probs=24.1
Q ss_pred eccCc-----hHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995 316 VLVCG-----HVYHAECLEIMTVDTDKYDPACPICV 346 (452)
Q Consensus 316 VLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC~ 346 (452)
++||. |++|..||++|+.+.. ...||+|.
T Consensus 16 ~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 16 VSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred EeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 67985 9999999999997653 35899995
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.52 E-value=9.1e-05 Score=62.84 Aligned_cols=58 Identities=17% Similarity=0.359 Sum_probs=40.2
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..|+||...+-..=|-.. .-++++|-=+++-=.|.|+||..|+..||... ..||+|+.
T Consensus 21 d~CaICRnhim~~C~eCq-~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk----~~CPld~q 78 (88)
T COG5194 21 DVCAICRNHIMGTCPECQ-FGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK----GVCPLDRQ 78 (88)
T ss_pred chhhhhhccccCcCcccc-cCCCCCCcceEEEEecchHHHHHHHHHHHhhC----CCCCCCCc
Confidence 568888777654322211 12244554456666899999999999999753 58999995
No 27
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=8.9e-05 Score=62.45 Aligned_cols=59 Identities=19% Similarity=0.420 Sum_probs=39.6
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.++|+||...|..-=| +=-+-..|-|.|-- .|-|.||+.|+.+|+..... +-.||+|+.
T Consensus 20 ~e~CGiCRm~Fdg~Cp---~Ck~PgDdCPLv~G-~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq 78 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCP---DCKLPGDDCPLVWG-YCLHAFHAHCILKWLNTPTS-QGQCPMCRQ 78 (84)
T ss_pred CCccceEecccCCcCC---CCcCCCCCCccHHH-HHHHHHHHHHHHHHhcCccc-cccCCcchh
Confidence 3489999998875322 11122234443211 79999999999999865543 368999995
No 28
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.40 E-value=0.00022 Score=57.24 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=42.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAFK 361 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~lk 361 (452)
+...|+||.+.+.+ ..+++|||+|=-.|+++|+.+ .+..||+|+..... ..|.. .+||
T Consensus 3 ~~f~CpIt~~lM~d-----------------PVi~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~-~~l~pn~~Lk 61 (73)
T PF04564_consen 3 DEFLCPITGELMRD-----------------PVILPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSE-SDLIPNRALK 61 (73)
T ss_dssp GGGB-TTTSSB-SS-----------------EEEETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SG-GGSEE-HHHH
T ss_pred cccCCcCcCcHhhC-----------------ceeCCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCc-ccceECHHHH
Confidence 67899999999854 236799999999999999975 35789999763322 23333 4566
Q ss_pred HHHHH
Q 012995 362 AEAEL 366 (452)
Q Consensus 362 ~e~~l 366 (452)
+..+-
T Consensus 62 ~~I~~ 66 (73)
T PF04564_consen 62 SAIEE 66 (73)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 29
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=6.6e-05 Score=73.33 Aligned_cols=57 Identities=25% Similarity=0.547 Sum_probs=41.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc--Ccchhhhhh
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV--GEKQVSKMS 356 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~--geK~~~kL~ 356 (452)
-....|-||.+.-++ +| |-.|||.|-.-||-||+.... ....||+|+. +++....|+
T Consensus 45 ~~~FdCNICLd~akd---------------PV--vTlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD---------------PV--VTLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCC---------------CE--EeecccceehHHHHHHHhhcC-CCeeCCccccccccceEEeee
Confidence 367889999987432 22 448999999999999986443 2356999998 446666666
No 30
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.34 E-value=0.0003 Score=71.33 Aligned_cols=73 Identities=23% Similarity=0.524 Sum_probs=45.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchh---hhhh-H
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQV---SKMS-R 357 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~---~kL~-~ 357 (452)
|+.+.|+||....- -+.++..... +|||.|-..|++..+... ...||.|......- .++| .
T Consensus 1 md~~~CP~Ck~~~y-----------~np~~kl~i~-~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lrk~~fr~q~F~D 65 (309)
T TIGR00570 1 MDDQGCPRCKTTKY-----------RNPSLKLMVN-VCGHTLCESCVDLLFVRG---SGSCPECDTPLRKNNFRVQLFED 65 (309)
T ss_pred CCCCCCCcCCCCCc-----------cCcccccccC-CCCCcccHHHHHHHhcCC---CCCCCCCCCccchhhcccccccc
Confidence 57889999987521 1223322222 899999999999987543 25799998844211 1233 3
Q ss_pred HHHHHHHHHHHh
Q 012995 358 KAFKAEAELRAK 369 (452)
Q Consensus 358 ~~lk~e~~lk~r 369 (452)
.++..|+++.-|
T Consensus 66 ~~vekEV~iRkr 77 (309)
T TIGR00570 66 PTVEKEVDIRKR 77 (309)
T ss_pred HHHHHHHHHHHH
Confidence 555566665433
No 31
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.33 E-value=7.5e-05 Score=78.77 Aligned_cols=47 Identities=23% Similarity=0.660 Sum_probs=37.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.+.-+|++|.+.+.+ ++.-+....|.|.||..||.+|.- .+||+|+.
T Consensus 173 tELPTCpVCLERMD~-------------s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~ 219 (493)
T KOG0804|consen 173 TELPTCPVCLERMDS-------------STTGILTILCNHSFHCSCLMKWWD------SSCPVCRY 219 (493)
T ss_pred ccCCCcchhHhhcCc-------------cccceeeeecccccchHHHhhccc------CcChhhhh
Confidence 478899999999865 222334458999999999999973 57999997
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00015 Score=64.21 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=37.7
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.+...|.||.+.|.+ + .+|+|||.|-..||..+.. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~---------------p--~~l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE---------------P--VLLPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc---------------C--ccccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 377889999999964 1 5789999999999999986 2368999993
No 33
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00022 Score=76.23 Aligned_cols=54 Identities=26% Similarity=0.596 Sum_probs=36.0
Q ss_pred cccccccccccccccccccccccccCCcccc--------ceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSV--------AAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~v--------VAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|+||..++.-.+ ...|..+ --+-||.|+||..||++|... +...||+|+.
T Consensus 570 ~t~dC~ICMt~I~l~~--------~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---ykl~CPvCR~ 631 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRS--------TGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---YKLICPVCRC 631 (636)
T ss_pred ccccceEeccccceee--------ccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh---hcccCCccCC
Confidence 3467999987765321 1112111 123499999999999999853 2357999997
No 34
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.10 E-value=0.00022 Score=74.71 Aligned_cols=51 Identities=24% Similarity=0.585 Sum_probs=39.9
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..+..|++|.+.|-.+. .....|||.|+||+.||...+.+ .-+..||-|++
T Consensus 363 e~~L~Cg~CGe~~Glk~-------------e~LqALpCsHIfH~rCl~e~L~~--n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKN-------------ERLQALPCSHIFHLRCLQEILEN--NGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCc-------------ccccccchhHHHHHHHHHHHHHh--CCCCCCccHHH
Confidence 35678999999987651 24567999999999999999843 24467999994
No 35
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0004 Score=72.84 Aligned_cols=51 Identities=25% Similarity=0.543 Sum_probs=41.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
++.+|+||...+.-. +| +.+..|.|||.|..+|+|.|+. +++-.+||.|..
T Consensus 3 ~g~tcpiclds~~~~-----------g~-hr~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~ 53 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTA-----------GN-HRIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSG 53 (463)
T ss_pred ccccCceeeeeeeec-----------Cc-eEEeeecccccccHHHHHHHHh--hhhhhhCcccCC
Confidence 678999999887532 23 4566899999999999999995 456678999986
No 36
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=97.07 E-value=0.00035 Score=69.90 Aligned_cols=55 Identities=36% Similarity=0.707 Sum_probs=45.0
Q ss_pred ccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhHH
Q 012995 286 ACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRK 358 (452)
Q Consensus 286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~~ 358 (452)
.|+||.+.|.. -.+++.+|+|||..|..|++.++-+. .+||+|.+ ..++..++++
T Consensus 160 ncPic~e~l~~-------------s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~-~~d~~~~~~~ 214 (276)
T KOG1940|consen 160 NCPICKEYLFL-------------SFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK-PGDMSHYFRK 214 (276)
T ss_pred CCchhHHHhcc-------------ccccCCccCcccchHHHHHHHHhccC----CCCCcccc-hHHHHHHHHH
Confidence 38899877643 34577899999999999999998633 79999999 8888888876
No 37
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=97.02 E-value=0.00013 Score=59.79 Aligned_cols=32 Identities=41% Similarity=0.851 Sum_probs=27.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLE 329 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLe 329 (452)
+...|.+|.+.|.. .+.++.||||+||..|++
T Consensus 77 ~~~~C~vC~k~l~~---------------~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN---------------SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC---------------ceEEEeCCCeEEeccccc
Confidence 56779999999843 467899999999999985
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.96 E-value=9.9e-05 Score=59.46 Aligned_cols=54 Identities=24% Similarity=0.606 Sum_probs=21.8
Q ss_pred ccccccccccccccccccccccccCCcccccee--ccCchHhHHHHHHHHhccCC----CCCC---CCCCcccC
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAV--LVCGHVYHAECLEIMTVDTD----KYDP---ACPICVVG 348 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAV--LpCGHvFHaeCLeqwt~e~~----~~dp---~CPIC~~g 348 (452)
...|+||...+.+ .++.+++.= -.|+++||..||-+||.... ..++ .||.|+..
T Consensus 2 ~~~C~IC~~~~~~-----------~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 2 ELECGICYSYRLD-----------DGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp --S-SSS--SS-T-----------T-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCCcCCcEecC-----------CCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 3569999876431 123333222 37999999999999985321 1223 49999973
No 39
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00069 Score=72.46 Aligned_cols=47 Identities=28% Similarity=0.484 Sum_probs=33.8
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC-CCCCCCCCCccc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT-DKYDPACPICVV 347 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~-~~~dp~CPIC~~ 347 (452)
.+.|+||...- ++.....|||+|-..||-+++.-. .+.-..||+|..
T Consensus 186 ~~~CPICL~~~-----------------~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s 233 (513)
T KOG2164|consen 186 DMQCPICLEPP-----------------SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRS 233 (513)
T ss_pred CCcCCcccCCC-----------------CcccccccCceeeHHHHHHHHhhhcccCCccCCchhh
Confidence 78899998762 122233699999999998886544 223356999997
No 40
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.00097 Score=66.61 Aligned_cols=51 Identities=27% Similarity=0.569 Sum_probs=38.9
Q ss_pred cccCCcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHH-HhccCCCCCCCCCCccc
Q 012995 276 FSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEI-MTVDTDKYDPACPICVV 347 (452)
Q Consensus 276 ~s~sps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeq-wt~e~~~~dp~CPIC~~ 347 (452)
++..| .-...|.||.+.- .+..-++|||+|-..||-. |+.+.- --||+|+.
T Consensus 208 ~pfip-~~d~kC~lC~e~~-----------------~~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRa 259 (271)
T COG5574 208 LPFIP-LADYKCFLCLEEP-----------------EVPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRA 259 (271)
T ss_pred CCccc-ccccceeeeeccc-----------------CCcccccccchhhHHHHHHHHHhhcc---ccCchhhh
Confidence 44555 6788999999864 2345679999999999999 886441 23999997
No 41
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.00095 Score=59.09 Aligned_cols=63 Identities=21% Similarity=0.446 Sum_probs=38.0
Q ss_pred cccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
++.-..|.||..-+-+.=--.-.+..++.+-=+|+==.|.|+||..|+.+|+.. ..+||+|.+
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~ 105 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNK 105 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCc
Confidence 356677888865432100000000012223235566689999999999999963 358999986
No 42
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=96.58 E-value=0.00097 Score=69.00 Aligned_cols=46 Identities=30% Similarity=0.805 Sum_probs=38.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||-+.|.- .-+.||||.|..-|+...+. +.|.||.|...+
T Consensus 22 ~lLRC~IC~eyf~i-----------------p~itpCsHtfCSlCIR~~L~----~~p~CP~C~~~~ 67 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI-----------------PMITPCSHTFCSLCIRKFLS----YKPQCPTCCVTV 67 (442)
T ss_pred HHHHHhHHHHHhcC-----------------ceeccccchHHHHHHHHHhc----cCCCCCceeccc
Confidence 67889999999842 22458999999999999997 558999999844
No 43
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.0028 Score=71.36 Aligned_cols=86 Identities=27% Similarity=0.551 Sum_probs=52.6
Q ss_pred ccccCCcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhh
Q 012995 275 RFSCSPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSK 354 (452)
Q Consensus 275 r~s~sps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~k 354 (452)
+++..+ +...+|.+|.-.| |+|.|. ..|||.||..|++ + ....||-|..-.....+
T Consensus 832 r~sa~i-~q~skCs~C~~~L---------------dlP~Vh-F~CgHsyHqhC~e----~---~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 832 RTSAQI-FQVSKCSACEGTL---------------DLPFVH-FLCGHSYHQHCLE----D---KEDKCPKCLPELRGVMD 887 (933)
T ss_pred hcccce-eeeeeecccCCcc---------------ccceee-eecccHHHHHhhc----c---CcccCCccchhhhhhHH
Confidence 344444 5678999999888 565543 4899999999999 1 22469999982222333
Q ss_pred hh---HHHHHHHHHHHHhhccccc--ceeeccCCC
Q 012995 355 MS---RKAFKAEAELRAKYHKISR--NRVVDSYLD 384 (452)
Q Consensus 355 L~---~~~lk~e~~lk~rn~k~~r--n~v~d~~~~ 384 (452)
|. +...+.+.+..+.+.+-+| --|+..++|
T Consensus 888 l~~s~~q~~~~~~~~f~~~~e~s~D~fsvite~fg 922 (933)
T KOG2114|consen 888 LKRSQEQKKTDDFDEFFHQSEGSKDSFSVITEYFG 922 (933)
T ss_pred HHHHHHHhhhhHHHHHHHhhcccCCcceeehhhcc
Confidence 33 2224555555555533222 335555555
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.15 E-value=0.0014 Score=73.25 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=37.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|++|..-+.+ ..+.+-.+|+|.||++||+.|.-.. .+||+|+.
T Consensus 122 ~~~~CP~Ci~s~~D--------------qL~~~~k~c~H~FC~~Ci~sWsR~a----qTCPiDR~ 168 (1134)
T KOG0825|consen 122 VENQCPNCLKSCND--------------QLEESEKHTAHYFCEECVGSWSRCA----QTCPVDRG 168 (1134)
T ss_pred hhhhhhHHHHHHHH--------------HhhccccccccccHHHHhhhhhhhc----ccCchhhh
Confidence 66779999776543 2355567999999999999998644 48999998
No 45
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0037 Score=69.34 Aligned_cols=45 Identities=29% Similarity=0.697 Sum_probs=35.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
...+|+.|..... .+++..|||+|..+|++..+.. ++-.||.|..
T Consensus 642 ~~LkCs~Cn~R~K-----------------d~vI~kC~H~FC~~Cvq~r~et---RqRKCP~Cn~ 686 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-----------------DAVITKCGHVFCEECVQTRYET---RQRKCPKCNA 686 (698)
T ss_pred hceeCCCccCchh-----------------hHHHHhcchHHHHHHHHHHHHH---hcCCCCCCCC
Confidence 4568999985432 3456689999999999999864 4467999998
No 46
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.84 E-value=0.0044 Score=48.60 Aligned_cols=45 Identities=16% Similarity=0.317 Sum_probs=29.3
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPI 344 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPI 344 (452)
....+|+|..++|.+ +|....|||+|=.+.+.+++.. .....||+
T Consensus 9 ~~~~~CPiT~~~~~~----------------PV~s~~C~H~fek~aI~~~i~~--~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFED----------------PVKSKKCGHTFEKEAILQYIQR--NGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SS----------------EEEESSS--EEEHHHHHHHCTT--TS-EE-SC
T ss_pred EeccCCCCcCChhhC----------------CcCcCCCCCeecHHHHHHHHHh--cCCCCCCC
Confidence 456789999999864 4556699999999999999932 24467999
No 47
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.011 Score=58.63 Aligned_cols=50 Identities=26% Similarity=0.577 Sum_probs=37.3
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC----CCCCCCCCcccCc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD----KYDPACPICVVGE 349 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~----~~dp~CPIC~~ge 349 (452)
-.|.+|.-.|.+. | ..-|.|=|+||..||+.|-..-. -...+||.|...+
T Consensus 51 pNC~LC~t~La~g------------d---t~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASG------------D---TTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccC------------c---ceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4699999998763 4 34689999999999999953221 2346899999743
No 48
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.54 E-value=0.012 Score=57.52 Aligned_cols=57 Identities=18% Similarity=0.402 Sum_probs=42.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc--Ccchhhhhh
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV--GEKQVSKMS 356 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~--geK~~~kL~ 356 (452)
.....|+|+.+.|... ...|++.+|||||=..||++.- .+..||+|.. .+.++..|.
T Consensus 111 ~~~~~CPvt~~~~~~~-------------~~fv~l~~cG~V~s~~alke~k-----~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGK-------------HKFVYLRPCGCVFSEKALKELK-----KSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCc-------------eeEEEEcCCCCEeeHHHHHhhc-----ccccccccCCccccCCEEEec
Confidence 3677899999988543 3467888999999999999994 1246999998 344444444
No 49
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.0073 Score=60.52 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=47.9
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc--CcchhhhhhHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV--GEKQVSKMSRKA 359 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~--geK~~~kL~~~~ 359 (452)
..+.|++|...|+. -++.+.+.+||||+-.+|.|+.+. .|..||+|-. .++++.-|.|++
T Consensus 220 ~ryiCpvtrd~LtN-------------t~~ca~Lr~sg~Vv~~ecvEklir----~D~v~pv~d~plkdrdiI~LqrGG 281 (303)
T KOG3039|consen 220 KRYICPVTRDTLTN-------------TTPCAVLRPSGHVVTKECVEKLIR----KDMVDPVTDKPLKDRDIIGLQRGG 281 (303)
T ss_pred cceecccchhhhcC-------------ccceEEeccCCcEeeHHHHHHhcc----ccccccCCCCcCcccceEeeeccc
Confidence 56789999999975 345566669999999999999997 4578999988 556677777644
No 50
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.28 E-value=0.019 Score=59.12 Aligned_cols=47 Identities=30% Similarity=0.625 Sum_probs=37.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
-...|++|..+|++. +..--|||.|..|||+.-|.+. |..||.|...
T Consensus 273 i~LkCplc~~Llrnp----------------~kT~cC~~~fc~eci~~al~ds---Df~CpnC~rk 319 (427)
T COG5222 273 ISLKCPLCHCLLRNP----------------MKTPCCGHTFCDECIGTALLDS---DFKCPNCSRK 319 (427)
T ss_pred ccccCcchhhhhhCc----------------ccCccccchHHHHHHhhhhhhc---cccCCCcccc
Confidence 347899999999762 2334699999999999998754 5789999983
No 51
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=95.25 E-value=0.017 Score=59.13 Aligned_cols=44 Identities=23% Similarity=0.649 Sum_probs=35.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|-||-..|.- ...-+|||.|.--|+...+.+ +|-||+|+.
T Consensus 24 s~lrC~IC~~~i~i-----------------p~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~ 67 (391)
T COG5432 24 SMLRCRICDCRISI-----------------PCETTCGHTFCSLCIRRHLGT----QPFCPVCRE 67 (391)
T ss_pred hHHHhhhhhheeec-----------------ceecccccchhHHHHHHHhcC----CCCCccccc
Confidence 45679999998853 223489999999999999974 488999997
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.72 E-value=0.015 Score=66.71 Aligned_cols=53 Identities=21% Similarity=0.546 Sum_probs=36.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..+-|+||--.|.-- + .-+|--.--.|.|-||+.||-+|+.... ...||+|+.
T Consensus 1468 G~eECaICYsvL~~v-----d-----r~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRs 1520 (1525)
T COG5219 1468 GHEECAICYSVLDMV-----D-----RSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRS 1520 (1525)
T ss_pred CcchhhHHHHHHHHH-----h-----ccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCcccc
Confidence 345699998877510 0 0223333346999999999999997553 358999995
No 53
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.66 E-value=0.023 Score=55.69 Aligned_cols=45 Identities=27% Similarity=0.513 Sum_probs=35.3
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
..|+||.++|..+ + |-.|||.|...|.-.-..+. +.|-+|-+..+
T Consensus 197 F~C~iCKkdy~sp---------------v--vt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESP---------------V--VTECGHSFCSLCAIRKYQKG----DECGVCGKATY 241 (259)
T ss_pred eeehhchhhccch---------------h--hhhcchhHHHHHHHHHhccC----Ccceecchhhc
Confidence 5799999998642 2 34799999999998877643 78999998443
No 54
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.016 Score=46.58 Aligned_cols=50 Identities=34% Similarity=0.674 Sum_probs=34.5
Q ss_pred cccccccccccccccccccccccCCccccceec-cCchH-hHHHH-HHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHV-YHAEC-LEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHv-FHaeC-Leqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
.-|.||-+- ++..|| .|||. +--+| |++|... ...||+|+...++..|-+
T Consensus 8 dECTICye~------------------pvdsVlYtCGHMCmCy~Cg~rl~~~~----~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEH------------------PVDSVLYTCGHMCMCYACGLRLKKAL----HGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccC------------------cchHHHHHcchHHhHHHHHHHHHHcc----CCcCcchhhHHHHHHHhh
Confidence 559999653 345566 89996 44556 4666642 257999999888877655
No 55
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.026 Score=58.29 Aligned_cols=59 Identities=25% Similarity=0.590 Sum_probs=41.1
Q ss_pred ccccccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhccCC---CCCCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTVDTD---KYDPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~e~~---~~dp~CPIC~~geK 350 (452)
-....|+||.+.+.++. .+ +..-++| +|-|.|-..|+.+|-...+ +-...||+|+..-+
T Consensus 159 s~~k~CGICme~i~ek~--~~--------~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKA--AS--------ERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccc--hh--------hhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 46788999999987752 11 1123344 5999999999999974332 11367999998443
No 56
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.034 Score=56.89 Aligned_cols=62 Identities=15% Similarity=0.255 Sum_probs=42.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhHHHHH
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFK 361 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~~~lk 361 (452)
.-.-.|.||...-- ....|+|+|+|--.||+-...... ..|++|+.+....+ ++++.|+
T Consensus 5 ~~~~eC~IC~nt~n-----------------~Pv~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~i-~~~psl~ 63 (324)
T KOG0824|consen 5 TKKKECLICYNTGN-----------------CPVNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDSTI-DFEPSLK 63 (324)
T ss_pred ccCCcceeeeccCC-----------------cCccccccchhhhhhhcchhhcCC---CCCceecCCCCcch-hcchhhh
Confidence 34556999986532 124789999999999988765332 35999999775554 5555555
Q ss_pred HHH
Q 012995 362 AEA 364 (452)
Q Consensus 362 ~e~ 364 (452)
.++
T Consensus 64 ~~L 66 (324)
T KOG0824|consen 64 YRL 66 (324)
T ss_pred hhh
Confidence 333
No 57
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.0079 Score=63.27 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=38.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
-...|.||.+.|.+. ......+.|||.||++||++|+... -.||.|+.
T Consensus 195 lv~sl~I~~~slK~~-------------y~k~~~~~~g~~~~~~kL~k~L~~~----~kl~~~~r 242 (465)
T KOG0827|consen 195 LVGSLSICFESLKQN-------------YDKISAIVCGHIYHHGKLSKWLATK----RKLPSCRR 242 (465)
T ss_pred HHhhhHhhHHHHHHH-------------HHHHHHHhhcccchhhHHHHHHHHH----HHhHHHHh
Confidence 345699999999862 2345568999999999999998754 25999998
No 58
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=93.60 E-value=0.034 Score=59.03 Aligned_cols=54 Identities=20% Similarity=0.559 Sum_probs=39.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKM 355 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL 355 (452)
..+.|-||-+. | ..|.+=||||.+..-||..|-.... ...||.|+.-.|.+-.+
T Consensus 368 TFeLCKICaen----------------d-KdvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 368 TFELCKICAEN----------------D-KDVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKGTEPV 421 (563)
T ss_pred hHHHHHHhhcc----------------C-CCcccccccchHHHHHHHhhcccCC--CCCCCceeeEeccccce
Confidence 56789999764 2 2466779999999999999974332 35899999855444333
No 59
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=0.022 Score=59.27 Aligned_cols=46 Identities=22% Similarity=0.451 Sum_probs=37.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.+..|+||+..|+.. ..+--|+|-|-.+|+..-+-..+ ..||.|++
T Consensus 42 ~~v~c~icl~llk~t----------------mttkeClhrfc~~ci~~a~r~gn---~ecptcRk 87 (381)
T KOG0311|consen 42 IQVICPICLSLLKKT----------------MTTKECLHRFCFDCIWKALRSGN---NECPTCRK 87 (381)
T ss_pred hhhccHHHHHHHHhh----------------cccHHHHHHHHHHHHHHHHHhcC---CCCchHHh
Confidence 567899999999642 23457999999999999987654 57999998
No 60
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=0.037 Score=62.88 Aligned_cols=35 Identities=29% Similarity=0.659 Sum_probs=28.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT 332 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt 332 (452)
-+..|.+|.+.|--+ .--+.+|||.||++||++-.
T Consensus 816 p~d~C~~C~~~ll~~---------------pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK---------------PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC---------------cceeeeccchHHHHHHHHHH
Confidence 467899999988543 22367999999999999875
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.23 E-value=0.074 Score=63.51 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=26.3
Q ss_pred cceeccCchHhHHHHHHHHhccC------CCCCCCCCCcccCc
Q 012995 313 VAAVLVCGHVYHAECLEIMTVDT------DKYDPACPICVVGE 349 (452)
Q Consensus 313 vVAVLpCGHvFHaeCLeqwt~e~------~~~dp~CPIC~~ge 349 (452)
+...|.|||.||..|....+... --.-..||+|+...
T Consensus 3501 P~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3501 PAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred cceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence 45578999999999997766321 11125799999844
No 62
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.069 Score=55.45 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=38.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKM 355 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL 355 (452)
.+..|.||+...+ .+.||||-|. +-..|.+...- +...||||+.+......+
T Consensus 289 ~gkeCVIClse~r-----------------dt~vLPCRHLCLCs~Ca~~Lr~----q~n~CPICRqpi~~ll~i 341 (349)
T KOG4265|consen 289 SGKECVICLSESR-----------------DTVVLPCRHLCLCSGCAKSLRY----QTNNCPICRQPIEELLEI 341 (349)
T ss_pred CCCeeEEEecCCc-----------------ceEEecchhhehhHhHHHHHHH----hhcCCCccccchHhhhee
Confidence 4678999987642 4679999996 67888888752 235699999977665443
No 63
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.57 E-value=0.028 Score=42.41 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=19.1
Q ss_pred eccCc-----hHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 316 VLVCG-----HVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 316 VLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
+.||+ -..|.+||++|+... ....|++|
T Consensus 15 i~pC~C~Gs~~~vH~~CL~~W~~~~--~~~~C~~C 47 (47)
T PF12906_consen 15 ISPCRCKGSMKYVHRSCLERWIRES--GNRKCEIC 47 (47)
T ss_dssp E-SSS-SSCCGSEECCHHHHHHHHH--T-SB-TTT
T ss_pred ecccccCCCcchhHHHHHHHHHHhc--CCCcCCCC
Confidence 45665 478999999998753 33569998
No 64
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.075 Score=55.90 Aligned_cols=46 Identities=30% Similarity=0.636 Sum_probs=36.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
....|.||.+.|-. ..++||||.|-..||++-+. +...||+|+.+-
T Consensus 83 sef~c~vc~~~l~~-----------------pv~tpcghs~c~~Cl~r~ld----~~~~cp~Cr~~l 128 (398)
T KOG4159|consen 83 SEFECCVCSRALYP-----------------PVVTPCGHSFCLECLDRSLD----QETECPLCRDEL 128 (398)
T ss_pred chhhhhhhHhhcCC-----------------CccccccccccHHHHHHHhc----cCCCCccccccc
Confidence 67889999887732 23569999999999999775 447899999844
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.94 E-value=0.12 Score=47.54 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=24.8
Q ss_pred ccccccccccccccccccccccccCCccccceeccCc------hHhHHHHHHHHh
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG------HVYHAECLEIMT 332 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG------HvFHaeCLeqwt 332 (452)
..-|.||...+.. ++ -+|+ ++|| |.||++|+++|.
T Consensus 26 ~~EC~IC~~~I~~------------~~-GvV~-vt~~g~lnLEkmfc~~C~~rw~ 66 (134)
T PF05883_consen 26 TVECQICFDRIDN------------ND-GVVY-VTDGGTLNLEKMFCADCDKRWR 66 (134)
T ss_pred Ceeehhhhhhhhc------------CC-CEEE-EecCCeehHHHHHHHHHHHHHH
Confidence 3459999988643 11 1333 4666 999999999995
No 66
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.72 E-value=0.084 Score=53.98 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=45.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhHHHHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSRKAFKA 362 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~~~lk~ 362 (452)
....|.||.+.|... | |-.|||.|-..|.-+-+.+. +.|+||.......+... -
T Consensus 240 ~Pf~c~icr~~f~~p---------------V--vt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~g~~~~a-----k 293 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRP---------------V--VTKCGHYFCEVCALKPYQKG----EKCYVCSQQTHGSFNVA-----K 293 (313)
T ss_pred CCccccccccccccc---------------h--hhcCCceeehhhhccccccC----CcceecccccccccchH-----H
Confidence 456799999998531 2 44899999999998887643 68999998443333222 2
Q ss_pred HHHHHHhhcccccc
Q 012995 363 EAELRAKYHKISRN 376 (452)
Q Consensus 363 e~~lk~rn~k~~rn 376 (452)
|+...+++ |+++|
T Consensus 294 eL~~~L~~-kks~~ 306 (313)
T KOG1813|consen 294 ELLVSLKL-KKSDS 306 (313)
T ss_pred HHHHHHHh-hhhhc
Confidence 35555665 55655
No 67
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.12 Score=52.48 Aligned_cols=50 Identities=22% Similarity=0.471 Sum_probs=36.7
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|++|+++=+- +-...+|||+|---|+..-+.-.- ..+||.|....
T Consensus 237 t~~~~C~~Cg~~Pti----------------P~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTI----------------PHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCC----------------Ceeeccccceeehhhhhhhhcchh--hcccCccCCCC
Confidence 477889999987321 233568999999999999875221 26899999743
No 68
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=0.22 Score=48.64 Aligned_cols=53 Identities=21% Similarity=0.536 Sum_probs=41.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
....|.||.++|+.. .+....++|.|||.+-..|+...+... ...||.|+..+
T Consensus 2 ~~~~c~~c~~~~s~~-----------~~~~~p~~l~c~h~~c~~c~~~l~~~~---~i~cpfcR~~~ 54 (296)
T KOG4185|consen 2 SFPECEICNEDYSSE-----------DGDHIPRVLKCGHTICQNCASKLLGNS---RILCPFCRETT 54 (296)
T ss_pred CCCceeecCcccccc-----------CcccCCcccccCceehHhHHHHHhcCc---eeeccCCCCcc
Confidence 345799999998642 234567899999999999999987532 35799999965
No 69
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.25 E-value=0.076 Score=54.67 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=27.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT 332 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt 332 (452)
-...|.||.--|... +...+-+|=|.||..||...+
T Consensus 114 p~gqCvICLygfa~~--------------~~ft~T~C~Hy~H~~ClaRyl 149 (368)
T KOG4445|consen 114 PNGQCVICLYGFASS--------------PAFTVTACDHYMHFACLARYL 149 (368)
T ss_pred CCCceEEEEEeecCC--------------CceeeehhHHHHHHHHHHHHH
Confidence 445699998877543 345577999999999997654
No 70
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=90.56 E-value=0.16 Score=52.71 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=37.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
....|.||...|... +....|||.|-+.|+..|+.. .+.||.|....
T Consensus 20 ~~l~C~~C~~vl~~p----------------~~~~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~ 66 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDP----------------VQTTTCGHRFCAGCLLESLSN----HQKCPVCRQEL 66 (391)
T ss_pred ccccCccccccccCC----------------CCCCCCCCcccccccchhhcc----CcCCccccccc
Confidence 568899999998642 122589999999999999974 46899998744
No 71
>PHA02862 5L protein; Provisional
Probab=88.88 E-value=0.42 Score=44.89 Aligned_cols=44 Identities=23% Similarity=0.606 Sum_probs=31.9
Q ss_pred cccccccccccccccccccccccCCccccceeccCc-----hHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-----HVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
..|=||...-.+ + +-||. -.-|.+||.+|+... +...|++|+..
T Consensus 3 diCWIC~~~~~e-------------~-----~~PC~C~GS~K~VHq~CL~~WIn~S--~k~~CeLCkte 51 (156)
T PHA02862 3 DICWICNDVCDE-------------R-----NNFCGCNEEYKVVHIKCMQLWINYS--KKKECNLCKTK 51 (156)
T ss_pred CEEEEecCcCCC-------------C-----cccccccCcchhHHHHHHHHHHhcC--CCcCccCCCCe
Confidence 569999875221 1 24765 688999999999654 34579999983
No 72
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.69 E-value=0.28 Score=51.65 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=35.3
Q ss_pred cccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+.+.+.|.||-+-++. ++++||||-+--.|.-.....- ....||+|+.
T Consensus 58 DEen~~C~ICA~~~TY-----------------s~~~PC~H~~CH~Ca~RlRALY--~~K~C~~CrT 105 (493)
T COG5236 58 DEENMNCQICAGSTTY-----------------SARYPCGHQICHACAVRLRALY--MQKGCPLCRT 105 (493)
T ss_pred ccccceeEEecCCceE-----------------EEeccCCchHHHHHHHHHHHHH--hccCCCcccc
Confidence 3588999999988754 6789999998888865442211 1246999998
No 73
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=0.65 Score=47.55 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=30.5
Q ss_pred eccCchHhHHHHHHHHhccCCCCCCCCCCcccC---cchhhhhhHHH
Q 012995 316 VLVCGHVYHAECLEIMTVDTDKYDPACPICVVG---EKQVSKMSRKA 359 (452)
Q Consensus 316 VLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g---eK~~~kL~~~~ 359 (452)
+-+|||..-..|.+..+...+ ..||-|+.- .+-..++|+..
T Consensus 20 in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~nfr~q~fED~ 63 (300)
T KOG3800|consen 20 INECGHRLCESCVDRIFSLGP---AQCPECMVILRKNNFRVQTFEDP 63 (300)
T ss_pred eccccchHHHHHHHHHHhcCC---CCCCcccchhhhcccchhhcchh
Confidence 339999999999999997553 579999982 24445566544
No 74
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=87.96 E-value=0.56 Score=44.43 Aligned_cols=48 Identities=25% Similarity=0.456 Sum_probs=33.5
Q ss_pred cccccccccccccccccccccccccccCCccccceeccCc--h---HhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG--H---VYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG--H---vFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+..+-.|=||.+.-. +| .-||. . .-|.+||++|+... +...|++|...
T Consensus 5 s~~~~~CRIC~~~~~---~~---------------~~PC~CkGs~k~VH~sCL~rWi~~s--~~~~CeiC~~~ 57 (162)
T PHA02825 5 SLMDKCCWICKDEYD---VV---------------TNYCNCKNENKIVHKECLEEWINTS--KNKSCKICNGP 57 (162)
T ss_pred CCCCCeeEecCCCCC---Cc---------------cCCcccCCCchHHHHHHHHHHHhcC--CCCcccccCCe
Confidence 346667999965521 11 13554 4 67999999999765 45789999983
No 75
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.31 E-value=0.29 Score=48.53 Aligned_cols=46 Identities=24% Similarity=0.655 Sum_probs=33.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
|+...|.-|...=. ...--+..|+|||-..|+..-.+ ..||+|++.
T Consensus 1 m~~VhCn~C~~~~~---------------~~~f~LTaC~HvfC~~C~k~~~~------~~C~lCkk~ 46 (233)
T KOG4739|consen 1 MDFVHCNKCFRFPS---------------QDPFFLTACRHVFCEPCLKASSP------DVCPLCKKS 46 (233)
T ss_pred CceEEeccccccCC---------------CCceeeeechhhhhhhhcccCCc------cccccccce
Confidence 35567888865422 12344679999999999988876 379999984
No 76
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=85.16 E-value=0.23 Score=40.77 Aligned_cols=45 Identities=24% Similarity=0.665 Sum_probs=23.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
....|.+|...|++ +|-+-.|.|+|-..|+..-+. ..||+|....
T Consensus 6 ~lLrCs~C~~~l~~----------------pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Pa 50 (65)
T PF14835_consen 6 ELLRCSICFDILKE----------------PVCLGGCEHIFCSSCIRDCIG------SECPVCHTPA 50 (65)
T ss_dssp HTTS-SSS-S--SS-----------------B---SSS--B-TTTGGGGTT------TB-SSS--B-
T ss_pred HhcCCcHHHHHhcC----------------CceeccCccHHHHHHhHHhcC------CCCCCcCChH
Confidence 45679999999865 344458999999999988664 2499999843
No 77
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=84.97 E-value=0.46 Score=52.37 Aligned_cols=49 Identities=24% Similarity=0.510 Sum_probs=31.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.||+. .+.|+-...-.+..=+.||++||.+|++.-- +-||.|..
T Consensus 510 ~gfiCe~Cq~---------~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQH---------NDIIYPFETRNTRRCSTCLAVFHKKCLRRKS-------PCCPRCER 558 (580)
T ss_pred CeeeeeeccC---------CCcccccccccceeHHHHHHHHHHHHHhccC-------CCCCchHH
Confidence 4556777732 1223333233355667899999999987543 35999986
No 78
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=84.66 E-value=0.9 Score=50.15 Aligned_cols=50 Identities=20% Similarity=0.552 Sum_probs=34.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhcc-CCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVD-TDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e-~~~~dp~CPIC~~ge 349 (452)
....|+||-++-.. .-+-.|.|+|.-.|+...... .+..+-.||+|..+.
T Consensus 535 ~~~~C~lc~d~aed-----------------~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAED-----------------YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhh-----------------hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 56789999887422 224489999999999766421 122347899999843
No 79
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=0.65 Score=48.55 Aligned_cols=44 Identities=30% Similarity=0.559 Sum_probs=28.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
....|.||...- | ...-+||||+-- |..-. ++-+.||+|+....
T Consensus 304 ~p~lcVVcl~e~-----~------------~~~fvpcGh~cc--ct~cs-----~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEP-----K------------SAVFVPCGHVCC--CTLCS-----KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCc-----c------------ceeeecCCcEEE--chHHH-----hhCCCCchhHHHHH
Confidence 556799998652 2 134679999933 33222 24477999996443
No 80
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=0.48 Score=53.82 Aligned_cols=49 Identities=29% Similarity=0.607 Sum_probs=32.3
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.+.|..|-.+.- +++..+..+.|+.|||+||.+|+-.-..+. .|-+|..
T Consensus 784 e~rc~~c~~~~l----------~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~-----~~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNL----------PSGAAFDSVVVFHCGHMYHKECLMMESLRN-----ACNIESG 832 (846)
T ss_pred hhhhhhhccccc----------ccCcccceeeEEEccchhhhcccccHHHhc-----ccChhhc
Confidence 347888877642 233346678899999999999986553322 2666654
No 81
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.38 E-value=1.9 Score=46.14 Aligned_cols=69 Identities=19% Similarity=0.243 Sum_probs=46.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHh----ccCCCCCCCCCCcccCcchhhhhhHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT----VDTDKYDPACPICVVGEKQVSKMSRK 358 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt----~e~~~~dp~CPIC~~geK~~~kL~~~ 358 (452)
....|-||-.... .......|||+|||-..|+...+ .+...+...||-|.-+..-.--..+.
T Consensus 183 slf~C~ICf~e~~--------------G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKe 248 (445)
T KOG1814|consen 183 SLFDCCICFEEQM--------------GQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKE 248 (445)
T ss_pred hcccceeeehhhc--------------CcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHH
Confidence 5677999976532 12356689999999999998775 33444447799998866444334555
Q ss_pred HHHHHHH
Q 012995 359 AFKAEAE 365 (452)
Q Consensus 359 ~lk~e~~ 365 (452)
++-+|+.
T Consensus 249 lvg~EL~ 255 (445)
T KOG1814|consen 249 LVGDELF 255 (445)
T ss_pred HHHHHHH
Confidence 5655544
No 82
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.00 E-value=2.5 Score=44.69 Aligned_cols=86 Identities=15% Similarity=0.289 Sum_probs=50.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc--Cc--chhhhhhHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV--GE--KQVSKMSRK 358 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~--ge--K~~~kL~~~ 358 (452)
+..-|++|.+++.- +++ +=. --+||-....-|.......- +.+||.|+. .+ -+...|+..
T Consensus 13 eed~cplcie~mdi-----tdk----nf~----pc~cgy~ic~fc~~~irq~l---ngrcpacrr~y~denv~~~~~s~e 76 (480)
T COG5175 13 EEDYCPLCIEPMDI-----TDK----NFF----PCPCGYQICQFCYNNIRQNL---NGRCPACRRKYDDENVRYVTLSPE 76 (480)
T ss_pred ccccCccccccccc-----ccC----Ccc----cCCcccHHHHHHHHHHHhhc---cCCChHhhhhccccceeEEecCHH
Confidence 33449999988642 111 111 13788888888887775432 368999998 22 345566766
Q ss_pred HHHHHHHHHHhhcccccceeeccCCC
Q 012995 359 AFKAEAELRAKYHKISRNRVVDSYLD 384 (452)
Q Consensus 359 ~lk~e~~lk~rn~k~~rn~v~d~~~~ 384 (452)
-||-||.-|.-.+++-|-+-...+..
T Consensus 77 e~kmel~rk~erk~rekerke~e~~n 102 (480)
T COG5175 77 ELKMELARKEERKMREKERKEAEGQN 102 (480)
T ss_pred HHHHHHHhhhhhhccHHHHhhhhccc
Confidence 67655554443334444454445444
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=80.80 E-value=0.51 Score=37.69 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=23.2
Q ss_pred cceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 313 VAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 313 vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+-.+|+|||+.-..|.+-+-- ..||+|-+.
T Consensus 19 ~~~~~pCgH~I~~~~f~~~rY------ngCPfC~~~ 48 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGERY------NGCPFCGTP 48 (55)
T ss_pred ccccccccceeeccccChhhc------cCCCCCCCc
Confidence 456899999998888776532 479999874
No 84
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=77.78 E-value=0.71 Score=49.03 Aligned_cols=73 Identities=19% Similarity=0.449 Sum_probs=0.0
Q ss_pred cccccccccccccccccc-ccc-cccCCccccceeccCchHhHHHHHHHHh----ccC-CCCCCCCCCccc---Ccchhh
Q 012995 284 LQACGACSKLLTERSSWC-SQR-IGANNELSVAAVLVCGHVYHAECLEIMT----VDT-DKYDPACPICVV---GEKQVS 353 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~ws-s~~-i~~~~Dl~vVAVLpCGHvFHaeCLeqwt----~e~-~~~dp~CPIC~~---geK~~~ 353 (452)
...|+||...=..-..|- .+. +.-....+.-+--||||+.-+....-|- |.. +.....||+|.. ++....
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~v 407 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYV 407 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCce
Confidence 668999976533323331 111 1111233455667999999999999993 322 234579999998 455555
Q ss_pred hhh
Q 012995 354 KMS 356 (452)
Q Consensus 354 kL~ 356 (452)
||.
T Consensus 408 rLi 410 (416)
T PF04710_consen 408 RLI 410 (416)
T ss_dssp ---
T ss_pred EEE
Confidence 554
No 85
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.89 E-value=0.51 Score=48.69 Aligned_cols=48 Identities=27% Similarity=0.578 Sum_probs=31.1
Q ss_pred cccccccccccccccccccccccccCCccccc-eeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVA-AVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vV-AVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
....|.||.+- +.. -.|.|||. --.+|-..+- -||||+.-.+...++|
T Consensus 299 ~~~LC~ICmDa------------------P~DCvfLeCGHmVtCt~CGkrm~--------eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDA------------------PRDCVFLECGHMVTCTKCGKRMN--------ECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcC------------------CcceEEeecCcEEeehhhccccc--------cCchHHHHHHHHHhhh
Confidence 47889999754 233 35799995 3455554443 5999998555555554
No 87
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.49 E-value=3.4 Score=42.09 Aligned_cols=46 Identities=17% Similarity=0.435 Sum_probs=33.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
...+|+|=.-.+. +-..-+++..|||||-+..|.+.-. -.|++|..
T Consensus 110 a~fiCPvtgleMn-------------g~~~F~~l~~CGcV~SerAlKeika------s~C~~C~a 155 (293)
T KOG3113|consen 110 ARFICPVTGLEMN-------------GKYRFCALRCCGCVFSERALKEIKA------SVCHVCGA 155 (293)
T ss_pred ceeecccccceec-------------ceEEEEEEeccceeccHHHHHHhhh------ccccccCC
Confidence 4567877665543 2333466779999999999999864 36999998
No 88
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=74.42 E-value=3.1 Score=32.39 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=21.4
Q ss_pred cccccccccccccccccccccCCccccceec--cCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 287 CGACSKLLTERSSWCSQRIGANNELSVAAVL--VCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 287 C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL--pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
|++|-+.|... ....+ +||+-+-..|....+... +..||-|+..
T Consensus 1 cp~C~e~~d~~---------------d~~~~PC~Cgf~IC~~C~~~i~~~~---~g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDET---------------DKDFYPCECGFQICRFCYHDILENE---GGRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CC---------------CTT--SSTTS----HHHHHHHTTSS----SB-TTT--B
T ss_pred CCCcccccccC---------------CCccccCcCCCcHHHHHHHHHHhcc---CCCCCCCCCC
Confidence 78898887432 22234 689999999999988632 4689999963
No 89
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=74.27 E-value=3.2 Score=38.65 Aligned_cols=57 Identities=28% Similarity=0.531 Sum_probs=39.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVS 353 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~ 353 (452)
....|.||.+.-.+ ++.+-++| =||-..-..|-.+.-.-.. -.|.||+|+..-|.-.
T Consensus 79 ~lYeCnIC~etS~e------e~FLKPne-------CCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAE------ERFLKPNE-------CCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccch------hhcCCccc-------ccchHHHHHHHHHHHHHcc-cCCCCCcccccccccc
Confidence 67889999987654 35676766 5998877777654422222 3499999998665443
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=73.54 E-value=2.1 Score=31.90 Aligned_cols=26 Identities=27% Similarity=0.732 Sum_probs=15.6
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
.|+=.+|..|++..+... .++.||.|
T Consensus 18 ~C~~r~H~~C~~~y~r~~--~~~~CP~C 43 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHR--SNPKCPNC 43 (43)
T ss_dssp -S--EE-HHHHHHHTTT---SS-B-TTT
T ss_pred ccCchHHHHHHHHHHhcC--CCCCCcCC
Confidence 477789999999998644 33579988
No 91
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.39 E-value=2.5 Score=44.35 Aligned_cols=73 Identities=21% Similarity=0.406 Sum_probs=45.0
Q ss_pred cccccccccccccccccccccc---cccCCccccceeccCchHhHHHHHHHHh----ccC-CCCCCCCCCccc---Ccch
Q 012995 283 DLQACGACSKLLTERSSWCSQR---IGANNELSVAAVLVCGHVYHAECLEIMT----VDT-DKYDPACPICVV---GEKQ 351 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~---i~~~~Dl~vVAVLpCGHvFHaeCLeqwt----~e~-~~~dp~CPIC~~---geK~ 351 (452)
..-.|++|...=..-..|-... -+. ...+.-|--||||+.-..-..-|- |.. ..++++||+|.. ||..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD-~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~ 418 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVD-AGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQG 418 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEec-CCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCc
Confidence 3567999976533333442111 111 122345667999999988888884 222 346799999998 6666
Q ss_pred hhhhh
Q 012995 352 VSKMS 356 (452)
Q Consensus 352 ~~kL~ 356 (452)
..||.
T Consensus 419 ~ikli 423 (429)
T KOG3842|consen 419 YIKLI 423 (429)
T ss_pred eEEEE
Confidence 55543
No 92
>PHA03096 p28-like protein; Provisional
Probab=72.79 E-value=2.7 Score=42.67 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=34.3
Q ss_pred cccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
-.|+||.+...++.+ ..+ .-+.| .|-|+|-..|+..|..+.. ..-.||.|+.
T Consensus 179 k~c~ic~e~~~~k~~--~~~--------~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYI--IKK--------YYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhcc--ccc--------cccccccCCcHHHHHHHHHHHHhhh-hcccCccccc
Confidence 679999888776531 111 12344 6999999999999976553 2344555553
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.66 E-value=2.1 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.684 Sum_probs=20.6
Q ss_pred eccCchHhHHHHHHHHhccCCCCCCCCCC
Q 012995 316 VLVCGHVYHAECLEIMTVDTDKYDPACPI 344 (452)
Q Consensus 316 VLpCGHvFHaeCLeqwt~e~~~~dp~CPI 344 (452)
-+.||||.|..|...|+..++ .||.
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd----~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGD----VCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCC----cCCC
Confidence 358999999999999997553 6874
No 94
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.07 E-value=2.6 Score=44.76 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=37.2
Q ss_pred CcccccccccccccccccccccccccccCCcccccee-ccCchHhHHHHHHHHhccCCCCCCCCCCcccCcch
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAV-LVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQ 351 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAV-LpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~ 351 (452)
|..+...|+||-.- +..|| -||+|--.-.|+.|-+-.. ..|-.|+..+..
T Consensus 418 p~sEd~lCpICyA~------------------pi~Avf~PC~H~SC~~CI~qHlmN~----k~CFfCktTv~~ 468 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG------------------PINAVFAPCSHRSCYGCITQHLMNC----KRCFFCKTTVID 468 (489)
T ss_pred CCcccccCcceecc------------------cchhhccCCCCchHHHHHHHHHhcC----CeeeEecceeee
Confidence 55688899999642 12233 3999999999999998633 579999986543
No 95
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=70.70 E-value=4 Score=39.93 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=26.0
Q ss_pred eeccCchHhHHHHHHHHhcc----CCCCC---CCCCCcccCc
Q 012995 315 AVLVCGHVYHAECLEIMTVD----TDKYD---PACPICVVGE 349 (452)
Q Consensus 315 AVLpCGHvFHaeCLeqwt~e----~~~~d---p~CPIC~~ge 349 (452)
.-..||.-||.-||-.|+.. .|..| .-||.|....
T Consensus 186 dN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 186 DNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred cccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 34689999999999999732 23334 4699999744
No 96
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=69.54 E-value=2.9 Score=43.59 Aligned_cols=45 Identities=20% Similarity=0.583 Sum_probs=36.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
...+|.+|.+.|.. ...+--|=|.|---||-..|.+. ..||+|..
T Consensus 14 ~~itC~LC~GYliD----------------ATTI~eCLHTFCkSCivk~l~~~----~~CP~C~i 58 (331)
T KOG2660|consen 14 PHITCRLCGGYLID----------------ATTITECLHTFCKSCIVKYLEES----KYCPTCDI 58 (331)
T ss_pred cceehhhccceeec----------------chhHHHHHHHHHHHHHHHHHHHh----ccCCccce
Confidence 56789999999853 23355799999999999998763 47999998
No 97
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=69.22 E-value=4.2 Score=38.71 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.2
Q ss_pred CCCCCCcccCcchhhhh
Q 012995 339 DPACPICVVGEKQVSKM 355 (452)
Q Consensus 339 dp~CPIC~~geK~~~kL 355 (452)
...||+|+..++.....
T Consensus 80 ~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccCccccCceeceEEc
Confidence 47899999988777544
No 98
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=68.72 E-value=2.6 Score=40.24 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=31.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
-+..|-||... +.|.......++.=..|+-+||.+|..+ ..||-|..
T Consensus 151 kGfiCe~C~~~---------~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSD---------DIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCC---------CCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 46778888643 1122222224556668999999999984 14999986
No 99
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.26 E-value=2.6 Score=47.54 Aligned_cols=55 Identities=24% Similarity=0.542 Sum_probs=37.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc-chhhhhh
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE-KQVSKMS 356 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge-K~~~kL~ 356 (452)
++...|.||..++-.. .- .-..|.|||+.-..|++.-.. -.|| |...+ +.+.++.
T Consensus 9 ~~~l~c~ic~n~f~~~-----------~~--~Pvsl~cghtic~~c~~~lyn------~scp-~~~De~~~~~~~~ 64 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQ-----------RL--EPVSLQCGHTICGHCVQLLYN------ASCP-TKRDEDSSLMQLK 64 (861)
T ss_pred HHHhhchHHHHHHHHH-----------hc--CcccccccchHHHHHHHhHhh------ccCC-CCccccchhcChh
Confidence 3667899996665321 01 223689999999999998865 4699 88743 5555544
No 100
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.06 E-value=5.6 Score=41.66 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=45.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC--CCCCCCC--Cccc--Ccchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD--KYDPACP--ICVV--GEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~--~~dp~CP--IC~~--geK~~~kL~ 356 (452)
..+.|.||...+.. .|...- ++.|+|.|-.+|..+-+.... ...+.|| -|.. ......+|+
T Consensus 145 ~~~~C~iC~~e~~~------------~~~~f~-~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~ll 211 (384)
T KOG1812|consen 145 PKEECGICFVEDPE------------AEDMFS-VLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLL 211 (384)
T ss_pred ccccCccCcccccc------------HhhhHH-HhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhc
Confidence 57889999844322 122233 789999999999999875432 2347786 4555 445555666
Q ss_pred HHHHHHHHHHHH
Q 012995 357 RKAFKAEAELRA 368 (452)
Q Consensus 357 ~~~lk~e~~lk~ 368 (452)
.+-|++-|+.++
T Consensus 212 t~kl~e~~e~~~ 223 (384)
T KOG1812|consen 212 TPKLREMWEQRL 223 (384)
T ss_pred CHHHHHHHHHHH
Confidence 554444444433
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=66.28 E-value=2.4 Score=44.34 Aligned_cols=45 Identities=24% Similarity=0.603 Sum_probs=31.9
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
--..|.-|..++.- -...+||-|||-.+|...-- |..||.|.-.+
T Consensus 89 ~VHfCd~Cd~PI~I----------------YGRmIPCkHvFCl~CAr~~~------dK~Cp~C~d~V 133 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAI----------------YGRMIPCKHVFCLECARSDS------DKICPLCDDRV 133 (389)
T ss_pred ceEeecccCCccee----------------eecccccchhhhhhhhhcCc------cccCcCcccHH
Confidence 34679999887631 13457999999999975421 45799998744
No 102
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=64.82 E-value=1.6 Score=30.68 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=8.2
Q ss_pred CCCCCcccCcc
Q 012995 340 PACPICVVGEK 350 (452)
Q Consensus 340 p~CPIC~~geK 350 (452)
..||+|..+..
T Consensus 18 ~~CP~Cg~~~~ 28 (33)
T cd00350 18 WVCPVCGAPKD 28 (33)
T ss_pred CcCcCCCCcHH
Confidence 57999987444
No 103
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=63.03 E-value=4.9 Score=45.23 Aligned_cols=43 Identities=28% Similarity=0.699 Sum_probs=33.3
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..|.||.+ ++ ..-+-+|||.|-.+|+.+-+...+.. .||+|+.
T Consensus 455 ~~c~ic~~-~~-----------------~~~it~c~h~~c~~c~~~~i~~~~~~--~~~~cr~ 497 (674)
T KOG1001|consen 455 HWCHICCD-LD-----------------SFFITRCGHDFCVECLKKSIQQSENA--PCPLCRN 497 (674)
T ss_pred cccccccc-cc-----------------cceeecccchHHHHHHHhccccccCC--CCcHHHH
Confidence 78999998 31 12244899999999999998765433 7999997
No 104
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.89 E-value=4.4 Score=46.34 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=20.4
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCC--ccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPI--CVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPI--C~~ 347 (452)
.|||.-|.+||.+|+.+. -.||. |-+
T Consensus 798 ~C~H~gH~sh~~sw~~~~----s~ca~~~C~~ 825 (839)
T KOG0269|consen 798 VCGHGGHDSHLKSWFFKA----SPCAKSICPH 825 (839)
T ss_pred cccccccHHHHHHHHhcC----CCCccccCCc
Confidence 699999999999999644 34665 655
No 105
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=61.54 E-value=4.3 Score=48.66 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=36.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|.||.+.+... -++..|||.|-..|++.|+. +.-.||+|+.
T Consensus 1152 ~~~~c~ic~dil~~~----------------~~I~~cgh~~c~~c~~~~l~----~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQ----------------GGIAGCGHEPCCRCDELWLY----ASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhc----------------CCeeeechhHhhhHHHHHHH----HhccCcchhh
Confidence 444899999998631 23568999999999999996 3468999997
No 106
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=59.55 E-value=7.2 Score=39.77 Aligned_cols=51 Identities=18% Similarity=0.410 Sum_probs=33.6
Q ss_pred ccccccccccccccccccccccccccCCccccceecc-CchHhHHHHHHHHhccCCCCCCCCC--Cccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV-CGHVYHAECLEIMTVDTDKYDPACP--ICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp-CGHvFHaeCLeqwt~e~~~~dp~CP--IC~~ 347 (452)
+....|+||.-+- -+ +-|+.. -+-| |=|-+...|.+..+..++ -+|| -|.+
T Consensus 8 ~~d~~CPvCksDr----------YL-nPdik~-linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~k 61 (314)
T COG5220 8 MEDRRCPVCKSDR----------YL-NPDIKI-LINPECYHRMCESCVDRIFSRGP---AQCPYKGCGK 61 (314)
T ss_pred hhcccCCcccccc----------cc-CCCeEE-EECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHH
Confidence 4566899997552 11 123321 1225 999999999999998664 3499 6764
No 107
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=58.80 E-value=6.3 Score=45.67 Aligned_cols=56 Identities=23% Similarity=0.481 Sum_probs=37.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCC---CCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKY---DPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~---dp~CPIC~~geK 350 (452)
-+.+-|.||.+.+... + ++-.=-.|=||||.-|+..|-...++. .-.||.|..--+
T Consensus 189 ~~~yeCmIC~e~I~~t-----~--------~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRT-----A--------PVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeecccc-----C--------CceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 3677899999988642 1 111122477999999999996433322 357999996333
No 108
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=57.42 E-value=7 Score=31.21 Aligned_cols=37 Identities=24% Similarity=0.600 Sum_probs=27.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT 332 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt 332 (452)
....|.+|.+.|+.+ | ++|.=-.||=.||.+|-+.--
T Consensus 4 ~~~~C~~Cg~~~~~~------------d-DiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDG------------D-DIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred cCccChhhCCcccCC------------C-CEEECCCCCCcccHHHHhhCC
Confidence 456799999998642 2 244445799999999987654
No 109
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.18 E-value=6.9 Score=41.70 Aligned_cols=34 Identities=29% Similarity=0.674 Sum_probs=26.8
Q ss_pred cceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 313 VAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 313 vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+.-.|.||||.--+.|++....+. +..-||.|=.
T Consensus 349 PPm~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~ 382 (394)
T KOG2817|consen 349 PPMMLICGHVISKDALNRLSKNGS-QSFKCPYCPV 382 (394)
T ss_pred CCeeeeccceecHHHHHHHhhCCC-eeeeCCCCCc
Confidence 344689999999999999986553 3467999965
No 110
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=54.83 E-value=12 Score=28.51 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=10.7
Q ss_pred cccccccccccccc
Q 012995 283 DLQACGACSKLLTE 296 (452)
Q Consensus 283 d~~~C~IC~k~L~e 296 (452)
+...|+.|.+.|+.
T Consensus 1 ~~f~CP~C~~~~~~ 14 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE 14 (54)
T ss_pred CCcCCCCCCCccCH
Confidence 35689999997754
No 111
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=52.84 E-value=11 Score=36.42 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=33.5
Q ss_pred ccccccccccccccccccccccccCCccccceeccCc-----hHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-----HVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+..|-||....... ..+ .-+.||- +..|..|+++|+... .+..|.+|..
T Consensus 78 ~~~cRIc~~~~~~~----------~~~---~l~~pC~C~g~l~~vH~~cl~~W~~~~--~~~~CeiC~~ 131 (323)
T KOG1609|consen 78 GPICRICHEEDEES----------NGL---LLISPCSCKGSLAYVHRSCLEKWFSIK--GNITCEICKS 131 (323)
T ss_pred CCcEEEEecccccc----------ccc---ccccCccccCcHHHHHHHHHHhhhccc--cCeeeecccc
Confidence 67899998865432 011 1133553 777999999999743 4578999998
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.35 E-value=20 Score=36.86 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=42.1
Q ss_pred CcccccccccccccccccccccccccccCCccccceeccCc-----hHhHHHHHHHHhccCCCCC----CCCCCcccCc-
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-----HVYHAECLEIMTVDTDKYD----PACPICVVGE- 349 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-----HvFHaeCLeqwt~e~~~~d----p~CPIC~~ge- 349 (452)
..+.+-.|-||-..=++ +-...=|-||. |--|..||..|+.|++.-+ -.||.|..-.
T Consensus 16 ~~e~eR~CWiCF~TdeD-------------n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 16 NQELERCCWICFATDED-------------NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccccceeEEEEeccCcc-------------cchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 34567779999654211 11112256775 8999999999998876533 4599999833
Q ss_pred chhhhhhHH
Q 012995 350 KQVSKMSRK 358 (452)
Q Consensus 350 K~~~kL~~~ 358 (452)
+.+-+|.+.
T Consensus 83 iv~P~l~~~ 91 (293)
T KOG3053|consen 83 IVFPQLGPF 91 (293)
T ss_pred eeccccChH
Confidence 444444443
No 113
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.87 E-value=4.6 Score=39.14 Aligned_cols=28 Identities=32% Similarity=0.630 Sum_probs=19.9
Q ss_pred cceeccCchHhH-HHHHHHHhccCCCCCCCCCCcccC
Q 012995 313 VAAVLVCGHVYH-AECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 313 vVAVLpCGHvFH-aeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.|.+|||.|.-| ..|-+. + ..||+|+..
T Consensus 170 ~VlllPCrHl~lC~~C~~~-~-------~~CPiC~~~ 198 (207)
T KOG1100|consen 170 TVLLLPCRHLCLCGICDES-L-------RICPICRSP 198 (207)
T ss_pred eEEeecccceEeccccccc-C-------ccCCCCcCh
Confidence 477899998754 556555 3 359999973
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=47.63 E-value=14 Score=38.64 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=33.8
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
-.|+||..++... |...+ --+|||..+.+|+..... .+.+||+|++..
T Consensus 250 ~s~p~~~~~~~~~------------d~~~l-P~~~~~~~~l~~~~t~~~----~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 250 PSCPICYEDLDLT------------DSNFL-PCPCGFRLCLFCHKTISD----GDGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCccccc------------ccccc-cccccccchhhhhhcccc----cCCCCCccCCcc
Confidence 4699999987331 22111 127999999999988864 557899999643
No 115
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=46.58 E-value=12 Score=40.89 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=28.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTV 333 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~ 333 (452)
+..+|+||...|++. .+|+|||-.-..|....+.
T Consensus 3 eelkc~vc~~f~~ep-----------------iil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFYREP-----------------IILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhccCc-----------------eEeecccHHHHHHHHhhcc
Confidence 567899999999753 3689999999999998864
No 116
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.28 E-value=6.4 Score=38.07 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHA 325 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHa 325 (452)
+..-|.||.++|.. + +.+|-|||==+||.
T Consensus 176 dkGECvICLEdL~~------------G--dtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEA------------G--DTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccC------------C--CceeccceEEEeec
Confidence 67779999999864 2 36899999988884
No 117
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=40.25 E-value=32 Score=29.62 Aligned_cols=56 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
+..++|-||.+.+--. .++| .-||.--|+--.---|.+.=..+.. ..||-|+...+
T Consensus 7 ~~~qiCqiCGD~VGl~---------~~Ge-~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGLT---------ENGE-VFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B----------SSSS-B--S-SSS-----HHHHHHHHHTS----SB-TTT--B--
T ss_pred cCCcccccccCccccC---------CCCC-EEEEEcccCCccchhHHHHHhhcCc---ccccccCCCcc
Confidence 5789999999987532 3344 3567778888888899998877654 47999996443
No 118
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=37.27 E-value=11 Score=40.41 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=0.0
Q ss_pred cceeccCchHhHHHHHHHHhccCCC--CCCCCCCccc
Q 012995 313 VAAVLVCGHVYHAECLEIMTVDTDK--YDPACPICVV 347 (452)
Q Consensus 313 vVAVLpCGHvFHaeCLeqwt~e~~~--~dp~CPIC~~ 347 (452)
+-.-|.||||+.. ..|..+.+. ....||+|+.
T Consensus 303 P~VYl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~ 336 (416)
T PF04710_consen 303 PWVYLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQ 336 (416)
T ss_dssp -------------------------------------
T ss_pred ceeeccccceeee---cccccccccccccccCCCccc
Confidence 4456899999764 367543332 3578999997
No 119
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=35.89 E-value=2.2 Score=31.33 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=20.2
Q ss_pred cCchHhHHHHHHHHhccC--CCCCCCCCCcc
Q 012995 318 VCGHVYHAECLEIMTVDT--DKYDPACPICV 346 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~--~~~dp~CPIC~ 346 (452)
.|+-.||..|+.--.... ....-.||.|+
T Consensus 19 ~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 19 SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 799999999997654311 11246799886
No 120
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=9.9 Score=37.28 Aligned_cols=51 Identities=25% Similarity=0.601 Sum_probs=38.3
Q ss_pred cccccccccccccccccccccccccCCccccceecc--------CchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV--------CGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp--------CGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.||...+... .+..+-.+|. |||.+-.+|.+..+.... ..||.|+.
T Consensus 206 ~~~~c~ic~~~~~~n-----------~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~ 264 (296)
T KOG4185|consen 206 IEKLCEICERIYSEN-----------DEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHHhhcc-----------ccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccc
Confidence 346699999988631 2333456777 999999999999986443 68999987
No 121
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=35.26 E-value=31 Score=40.39 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=32.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCc-----hHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-----HVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
|..+|-||...=.+.+|. -=||. -..|.|||-.|+.-. .+.-|-+|.-
T Consensus 11 d~~~CRICr~e~~~d~pL---------------fhPCKC~GSIkYiH~eCL~eW~~~s--~~~kCdiChy 63 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL---------------FHPCKCSGSIKYIHRECLMEWMECS--GTKKCDICHY 63 (1175)
T ss_pred cchhceeecCCCCCCCcC---------------cccccccchhHHHHHHHHHHHHhcC--CCcceeeecc
Confidence 678899996543332211 11554 578999999998633 3457999987
No 122
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.35 E-value=27 Score=36.98 Aligned_cols=32 Identities=31% Similarity=0.676 Sum_probs=25.3
Q ss_pred eeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 315 AVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 315 AVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
-.|.||||.-.+.|++.-.++- ....||.|-.
T Consensus 353 ~ml~CgHVIskeal~~LS~nG~-~~FKCPYCP~ 384 (396)
T COG5109 353 VMLECGHVISKEALSVLSQNGV-LSFKCPYCPE 384 (396)
T ss_pred eeeeccceeeHHHHHHHhhcCc-EEeeCCCCCc
Confidence 4689999999999999865543 3467999974
No 123
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.12 E-value=16 Score=42.54 Aligned_cols=51 Identities=24% Similarity=0.461 Sum_probs=34.2
Q ss_pred cccccccccccccccccccccccccccCCccccceec--cCchH-hHHHHHHHHhccCCCCCCCCCCccc
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVL--VCGHV-YHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL--pCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..+...|.||...=. ..|-+| .|.-+ ||..||+.=+-+.....-.|+-|.-
T Consensus 212 ~~E~~~C~IC~~~Dp----------------EdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 212 SQEEVKCDICTVHDP----------------EDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred ccccccceeeccCCh----------------HHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 346678999976521 222233 57788 9999999866444444457999987
No 124
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=28.97 E-value=44 Score=35.36 Aligned_cols=29 Identities=21% Similarity=0.583 Sum_probs=20.7
Q ss_pred CchHhHHHHHHHHhccCCCCC---------CCCCCccc
Q 012995 319 CGHVYHAECLEIMTVDTDKYD---------PACPICVV 347 (452)
Q Consensus 319 CGHvFHaeCLeqwt~e~~~~d---------p~CPIC~~ 347 (452)
|-...-.+|+-+|+.-.|.+. -+||+|++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 445568999999986554221 57999997
No 125
>PF15353 HECA: Headcase protein family homologue
Probab=28.68 E-value=33 Score=30.88 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=14.1
Q ss_pred cCchHhHHHHHHHHhc
Q 012995 318 VCGHVYHAECLEIMTV 333 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~ 333 (452)
|.|+.+|.+|+++|-.
T Consensus 39 p~~~~MH~~CF~~wE~ 54 (107)
T PF15353_consen 39 PFGQYMHRECFEKWED 54 (107)
T ss_pred CCCCchHHHHHHHHHH
Confidence 6799999999999953
No 126
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=27.14 E-value=54 Score=24.97 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=10.5
Q ss_pred HHHHHHhccCCCCCCCCCCccc
Q 012995 326 ECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 326 eCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+-+++.+.+....+..||+|..
T Consensus 7 ~~~~k~i~~l~~~~~~CPlC~r 28 (54)
T PF04423_consen 7 EELKKYIEELKEAKGCCPLCGR 28 (54)
T ss_dssp HHHHHHHHHHTT-SEE-TTT--
T ss_pred HHHHHHHHHHhcCCCcCCCCCC
Confidence 3455555444434458999998
No 127
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=26.48 E-value=27 Score=28.72 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=14.9
Q ss_pred ccccceeccCchHhHHHHH
Q 012995 310 ELSVAAVLVCGHVYHAECL 328 (452)
Q Consensus 310 Dl~vVAVLpCGHvFHaeCL 328 (452)
+.+-||.|.|||.=|..=-
T Consensus 8 e~hWVA~L~CGH~QHvRH~ 26 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVRHD 26 (61)
T ss_pred cCCEEEEecccccccccCC
Confidence 4567999999999886543
No 128
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=26.16 E-value=27 Score=24.48 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=14.4
Q ss_pred CcceeecCcccccccc
Q 012995 32 SWSFRRDNQRRVAGEV 47 (452)
Q Consensus 32 swSFrwDnr~rva~e~ 47 (452)
.|.|.||..||+..+.
T Consensus 17 ~~~~~YD~~Grl~~~t 32 (42)
T TIGR01643 17 TTRYTYDAAGRLVEIT 32 (42)
T ss_pred EEEEEECCCCCEEEEE
Confidence 7999999999998775
No 129
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=25.39 E-value=40 Score=33.87 Aligned_cols=45 Identities=24% Similarity=0.567 Sum_probs=33.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.+|-+++-+ .+.-=.||=.||.-|.+..|.+ .+.||-|.-
T Consensus 180 nlk~Cn~Ch~LvIq----------------g~rCg~c~i~~h~~c~qty~q~----~~~cphc~d 224 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQ----------------GIRCGSCNIQYHRGCIQTYLQR----RDICPHCGD 224 (235)
T ss_pred HHHHHhHhHHHhhe----------------eeccCcccchhhhHHHHHHhcc----cCcCCchhc
Confidence 56789999998643 1222357778999999999975 378999953
No 130
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=23.80 E-value=24 Score=29.82 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=22.1
Q ss_pred cccccccccccccccccccccccccCCcccccee---ccCchHhHHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAV---LVCGHVYHAEC 327 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAV---LpCGHvFHaeC 327 (452)
-...|..|.+.|... +.+|++.. ..-.+.||..|
T Consensus 53 fs~pC~~C~klL~~~-----------~~LPP~~r~~~~~~~~ayH~~C 89 (90)
T PF11571_consen 53 FSTPCKKCGKLLSSK-----------AFLPPVRRPKDFRSWEAYHEGC 89 (90)
T ss_pred ccchhhHHHhHhhhc-----------ccCCCeeecccCCCCcccCccc
Confidence 455699999999322 23444333 23468999998
No 131
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=23.13 E-value=35 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=14.1
Q ss_pred CCCCCCCcccCcchhhhhh
Q 012995 338 YDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 338 ~dp~CPIC~~geK~~~kL~ 356 (452)
.|+.||.|+.-++.+.++.
T Consensus 23 ~D~~Cp~C~~~~~~~~~~~ 41 (178)
T cd03019 23 FSYGCPHCYNFEPILEAWV 41 (178)
T ss_pred ECCCCcchhhhhHHHHHHH
Confidence 4789999998776665544
No 132
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=22.49 E-value=24 Score=33.20 Aligned_cols=25 Identities=32% Similarity=0.614 Sum_probs=22.0
Q ss_pred hHHHHHHHHhccCCCCCCCCCCccc
Q 012995 323 YHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 323 FHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
||..||+-=|.+....+=.||.|..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcC
Confidence 8999999988777777788999997
No 133
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=22.48 E-value=18 Score=33.94 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=16.7
Q ss_pred cCchHhHHHHHHHHhccCCC-------CCCCCCCcccC
Q 012995 318 VCGHVYHAECLEIMTVDTDK-------YDPACPICVVG 348 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~-------~dp~CPIC~~g 348 (452)
.|||.| |.||..... .-..||+|...
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 367776 677754322 22789999873
No 134
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.32 E-value=39 Score=23.10 Aligned_cols=9 Identities=22% Similarity=0.778 Sum_probs=6.2
Q ss_pred ccccccccc
Q 012995 286 ACGACSKLL 294 (452)
Q Consensus 286 ~C~IC~k~L 294 (452)
.|+-|.+.+
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 477777765
No 135
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.83 E-value=58 Score=39.18 Aligned_cols=42 Identities=24% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhc
Q 012995 279 SPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTV 333 (452)
Q Consensus 279 sps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~ 333 (452)
.+.+....|-||.+.+.. +.++.--|.|||+-|.+|-.....
T Consensus 1128 ~~~iht~~c~~c~q~~~~-------------h~~~~~Fl~wgh~qh~qc~~~~d~ 1169 (1206)
T KOG2079|consen 1128 GWSIHTDDCEICGQKIWA-------------HLDPLLFLAWGHVQHHQCMISVDL 1169 (1206)
T ss_pred CceecCcchHhhhhhhhc-------------cCcchheeeccchhhHHHHHHHhh
Confidence 466788889999888731 445556678999999999887763
No 136
>PLN02189 cellulose synthase
Probab=20.64 E-value=66 Score=38.47 Aligned_cols=57 Identities=23% Similarity=0.443 Sum_probs=41.3
Q ss_pred cccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
....++|-||.+.+.-. ..+| .-||.--||--.---|.|-=..+++ ..||-|+...|
T Consensus 31 ~~~~~~C~iCgd~vg~~---------~~g~-~fvaC~~C~fpvCr~Cyeyer~eg~---q~CpqCkt~Y~ 87 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLT---------VDGD-LFVACNECGFPVCRPCYEYERREGT---QNCPQCKTRYK 87 (1040)
T ss_pred cccCccccccccccCcC---------CCCC-EEEeeccCCCccccchhhhhhhcCC---ccCcccCCchh
Confidence 35778999999998532 2334 3466667888888899987666553 57999998555
No 137
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.46 E-value=68 Score=33.80 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=21.9
Q ss_pred cCchHhHHHHHHHHhccCCC---------CCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDK---------YDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~---------~dp~CPIC~~ 347 (452)
-|....-.+||.+|+...|. ..-+||+|++
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~ 362 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRK 362 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhh
Confidence 46678889999999854431 1257999997
No 138
>PLN02436 cellulose synthase A
Probab=20.16 E-value=67 Score=38.57 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=41.5
Q ss_pred cccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcch
Q 012995 281 SVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQ 351 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~ 351 (452)
....++|-||.+.+.-. ..+|+ -||-=-||--.---|.|-=..+++ ..||-|+...|+
T Consensus 33 ~~~~~iCqICGD~Vg~t---------~dGe~-FVACn~C~fpvCr~Cyeyer~eg~---~~Cpqckt~Y~r 90 (1094)
T PLN02436 33 ELSGQTCQICGDEIELT---------VDGEP-FVACNECAFPVCRPCYEYERREGN---QACPQCKTRYKR 90 (1094)
T ss_pred ccCCccccccccccCcC---------CCCCE-EEeeccCCCccccchhhhhhhcCC---ccCcccCCchhh
Confidence 45788999999998532 23443 466667888888899987666553 579999985553
No 139
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.15 E-value=84 Score=24.48 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=9.0
Q ss_pred ccccccccccccc
Q 012995 285 QACGACSKLLTER 297 (452)
Q Consensus 285 ~~C~IC~k~L~ek 297 (452)
..|.+|.-.|..+
T Consensus 2 y~C~~CgyiYd~~ 14 (50)
T cd00730 2 YECRICGYIYDPA 14 (50)
T ss_pred cCCCCCCeEECCC
Confidence 4688888777653
Done!