Query 012995
Match_columns 452
No_of_seqs 140 out of 182
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 20:14:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.1 5.1E-11 1.7E-15 98.1 4.2 65 283-347 24-90 (114)
2 2ep4_A Ring finger protein 24; 99.1 3.8E-11 1.3E-15 91.9 3.1 55 283-355 14-68 (74)
3 2ecm_A Ring finger and CHY zin 99.0 8.3E-11 2.8E-15 84.9 1.8 49 283-348 4-52 (55)
4 1x4j_A Ring finger protein 38; 99.0 5.9E-11 2E-15 91.5 1.0 49 282-348 21-69 (75)
5 2ecl_A Ring-box protein 2; RNF 99.0 1.5E-10 5.2E-15 91.7 3.3 61 282-348 13-73 (81)
6 2ect_A Ring finger protein 126 99.0 1E-10 3.5E-15 90.4 2.1 50 282-349 13-62 (78)
7 1iym_A EL5; ring-H2 finger, ub 99.0 1.2E-10 4E-15 84.3 2.1 48 283-348 4-52 (55)
8 3ng2_A RNF4, snurf, ring finge 99.0 1.1E-10 3.8E-15 88.0 1.9 53 282-348 8-60 (71)
9 2kiz_A E3 ubiquitin-protein li 99.0 1.3E-10 4.4E-15 87.9 2.2 49 283-349 13-61 (69)
10 2ea6_A Ring finger protein 4; 99.0 2.4E-10 8.4E-15 85.2 3.5 54 282-349 13-66 (69)
11 2l0b_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 92.8 2.4 48 283-348 39-86 (91)
12 3dpl_R Ring-box protein 1; ubi 98.9 3.5E-10 1.2E-14 95.5 3.3 63 282-348 35-98 (106)
13 2xeu_A Ring finger protein 4; 98.9 1.4E-10 4.7E-15 85.5 0.7 52 283-348 2-53 (64)
14 2d8t_A Dactylidin, ring finger 98.9 8.4E-10 2.9E-14 84.4 3.4 49 280-349 11-59 (71)
15 1chc_A Equine herpes virus-1 r 98.8 3.9E-10 1.4E-14 84.8 0.6 49 283-351 4-52 (68)
16 1g25_A CDK-activating kinase a 98.8 2.3E-09 7.9E-14 80.5 2.9 52 282-349 1-53 (65)
17 2ct2_A Tripartite motif protei 98.8 3.1E-09 1.1E-13 82.9 3.0 54 282-349 13-66 (88)
18 2djb_A Polycomb group ring fin 98.7 4.3E-09 1.5E-13 80.6 3.4 47 283-349 14-60 (72)
19 2ysl_A Tripartite motif-contai 98.7 4.3E-09 1.5E-13 79.8 3.4 49 283-349 19-67 (73)
20 2ysj_A Tripartite motif-contai 98.7 4.1E-09 1.4E-13 78.5 2.9 46 282-345 18-63 (63)
21 2ecj_A Tripartite motif-contai 98.7 9.4E-09 3.2E-13 74.6 4.6 45 283-345 14-58 (58)
22 4a0k_B E3 ubiquitin-protein li 98.7 1.5E-09 5E-14 93.8 0.3 61 283-347 47-108 (117)
23 2ecn_A Ring finger protein 141 98.7 3E-09 1E-13 80.5 1.5 46 282-349 13-58 (70)
24 2yur_A Retinoblastoma-binding 98.7 6.2E-09 2.1E-13 80.5 3.0 49 282-349 13-62 (74)
25 2csy_A Zinc finger protein 183 98.7 7.2E-09 2.5E-13 80.8 3.3 48 282-350 13-60 (81)
26 2ecy_A TNF receptor-associated 98.7 8.2E-09 2.8E-13 77.7 3.3 48 282-349 13-60 (66)
27 2y43_A E3 ubiquitin-protein li 98.7 1.1E-08 3.7E-13 82.6 3.7 47 283-349 21-67 (99)
28 4ayc_A E3 ubiquitin-protein li 98.7 6E-09 2E-13 89.4 2.1 46 283-349 52-97 (138)
29 1t1h_A Gspef-atpub14, armadill 98.6 1.1E-08 3.8E-13 78.9 3.2 47 283-349 7-53 (78)
30 3ztg_A E3 ubiquitin-protein li 98.6 1.4E-08 4.9E-13 80.5 3.6 49 282-349 11-60 (92)
31 3lrq_A E3 ubiquitin-protein li 98.6 7.9E-09 2.7E-13 84.4 2.1 48 283-349 21-68 (100)
32 4ap4_A E3 ubiquitin ligase RNF 98.6 9.1E-09 3.1E-13 84.7 1.5 51 283-347 6-56 (133)
33 2d8s_A Cellular modulator of i 98.6 1.2E-08 4.1E-13 82.2 2.1 50 283-349 14-68 (80)
34 2ckl_A Polycomb group ring fin 98.6 1.5E-08 5E-13 83.2 2.6 47 283-349 14-60 (108)
35 2egp_A Tripartite motif-contai 98.6 1.7E-08 5.9E-13 77.4 2.6 51 282-349 10-63 (79)
36 3l11_A E3 ubiquitin-protein li 98.6 1.8E-08 6.2E-13 83.3 2.8 51 279-349 10-60 (115)
37 2ckl_B Ubiquitin ligase protei 98.6 2E-08 6.7E-13 88.0 2.7 48 283-349 53-100 (165)
38 4ap4_A E3 ubiquitin ligase RNF 98.6 1.1E-08 3.8E-13 84.2 0.9 52 283-348 71-122 (133)
39 2ecw_A Tripartite motif-contai 98.6 2.4E-08 8.1E-13 76.8 2.6 50 283-349 18-69 (85)
40 3fl2_A E3 ubiquitin-protein li 98.5 3.6E-08 1.2E-12 82.7 3.5 48 283-350 51-98 (124)
41 2ecv_A Tripartite motif-contai 98.5 1.8E-08 6.2E-13 77.4 1.3 50 283-349 18-69 (85)
42 1jm7_A BRCA1, breast cancer ty 98.5 4.6E-08 1.6E-12 79.6 2.0 49 283-349 20-68 (112)
43 3hct_A TNF receptor-associated 98.4 1.3E-07 4.5E-12 78.9 2.8 49 282-350 16-64 (118)
44 1z6u_A NP95-like ring finger p 98.3 1.4E-07 4.6E-12 83.1 2.1 47 283-349 77-123 (150)
45 1rmd_A RAG1; V(D)J recombinati 98.3 1.9E-07 6.5E-12 77.2 1.9 47 283-349 22-68 (116)
46 2ct0_A Non-SMC element 1 homol 98.2 8.2E-07 2.8E-11 71.3 4.3 47 283-347 14-60 (74)
47 1e4u_A Transcriptional repress 98.2 6.1E-07 2.1E-11 71.7 3.4 51 282-350 9-61 (78)
48 2kre_A Ubiquitin conjugation f 98.2 1.1E-06 3.7E-11 73.0 4.4 63 283-367 28-91 (100)
49 4ic3_A E3 ubiquitin-protein li 98.2 2.2E-07 7.7E-12 72.3 0.2 49 283-356 23-72 (74)
50 2kr4_A Ubiquitin conjugation f 98.2 8.2E-07 2.8E-11 71.2 3.4 62 283-366 13-75 (85)
51 2vje_A E3 ubiquitin-protein li 98.2 5.2E-07 1.8E-11 68.9 1.8 56 280-356 4-62 (64)
52 1wgm_A Ubiquitin conjugation f 98.1 3.7E-06 1.3E-10 69.5 6.6 63 283-367 21-85 (98)
53 1jm7_B BARD1, BRCA1-associated 98.1 2.9E-07 9.7E-12 76.8 -0.3 44 283-349 21-65 (117)
54 2ecg_A Baculoviral IAP repeat- 98.0 8.8E-07 3E-11 68.8 1.1 49 283-356 24-73 (75)
55 1bor_A Transcription factor PM 98.0 3.5E-07 1.2E-11 67.8 -1.1 44 282-349 4-47 (56)
56 2y1n_A E3 ubiquitin-protein li 98.0 1.2E-06 4.1E-11 89.0 2.0 47 284-350 332-378 (389)
57 2vje_B MDM4 protein; proto-onc 98.0 1.3E-06 4.4E-11 66.5 1.4 56 282-356 5-61 (63)
58 2yu4_A E3 SUMO-protein ligase 98.0 5.6E-06 1.9E-10 67.2 5.2 68 282-366 5-78 (94)
59 1wim_A KIAA0161 protein; ring 98.0 3.3E-06 1.1E-10 67.9 2.9 74 283-370 4-83 (94)
60 3knv_A TNF receptor-associated 97.9 1.3E-06 4.5E-11 76.2 0.3 47 282-348 29-75 (141)
61 2c2l_A CHIP, carboxy terminus 97.9 5.3E-06 1.8E-10 75.9 3.1 63 282-365 206-269 (281)
62 3hcs_A TNF receptor-associated 97.8 5.5E-06 1.9E-10 72.7 2.6 48 282-349 16-63 (170)
63 2ea5_A Cell growth regulator w 97.8 6.1E-06 2.1E-10 64.0 2.3 51 282-357 13-64 (68)
64 2yho_A E3 ubiquitin-protein li 97.6 9.8E-06 3.4E-10 64.4 0.4 50 283-357 17-67 (79)
65 1vyx_A ORF K3, K3RING; zinc-bi 97.5 3.3E-05 1.1E-09 59.1 2.0 46 283-347 5-55 (60)
66 3t6p_A Baculoviral IAP repeat- 97.4 1.3E-05 4.5E-10 79.8 -1.1 49 283-356 294-343 (345)
67 2f42_A STIP1 homology and U-bo 97.3 0.00011 3.9E-09 67.5 2.9 63 283-366 105-168 (179)
68 3htk_C E3 SUMO-protein ligase 97.2 0.00018 6E-09 70.3 4.0 48 282-347 179-228 (267)
69 3k1l_B Fancl; UBC, ring, RWD, 97.2 6.4E-05 2.2E-09 76.3 0.4 57 282-349 306-371 (381)
70 2bay_A PRE-mRNA splicing facto 96.6 0.0005 1.7E-08 52.5 0.8 42 285-347 4-46 (61)
71 3nw0_A Non-structural maintena 96.1 0.0021 7.1E-08 61.0 2.4 47 283-347 179-225 (238)
72 3vk6_A E3 ubiquitin-protein li 95.7 0.0039 1.3E-07 53.4 2.3 47 285-350 2-48 (101)
73 3lqh_A Histone-lysine N-methyl 88.2 0.064 2.2E-06 49.4 -1.1 69 284-365 2-77 (183)
74 2k16_A Transcription initiatio 80.2 0.42 1.4E-05 37.2 0.5 51 283-347 17-67 (75)
75 1f62_A Transcription factor WS 79.4 1.1 3.7E-05 32.4 2.5 30 318-347 20-49 (51)
76 2lri_C Autoimmune regulator; Z 77.5 0.69 2.4E-05 36.1 1.0 30 318-347 29-58 (66)
77 3o36_A Transcription intermedi 74.8 0.63 2.2E-05 41.6 0.1 31 318-348 21-51 (184)
78 1we9_A PHD finger family prote 74.5 0.25 8.7E-06 37.3 -2.2 53 282-347 4-57 (64)
79 1wil_A KIAA1045 protein; ring 73.7 2.6 9E-05 35.4 3.5 51 282-347 13-75 (89)
80 2ysm_A Myeloid/lymphoid or mix 72.3 0.91 3.1E-05 37.6 0.5 49 283-346 6-55 (111)
81 3u5n_A E3 ubiquitin-protein li 70.1 0.71 2.4E-05 42.1 -0.7 31 318-348 24-54 (207)
82 2l5u_A Chromodomain-helicase-D 69.5 2.1 7.2E-05 32.5 1.9 49 282-347 9-57 (61)
83 1wep_A PHF8; structural genomi 69.0 1.7 5.9E-05 34.2 1.4 55 280-348 8-63 (79)
84 2lbm_A Transcriptional regulat 68.8 6.5 0.00022 35.1 5.2 30 318-347 80-116 (142)
85 2yql_A PHD finger protein 21A; 61.5 0.73 2.5E-05 34.2 -2.0 49 282-347 7-55 (56)
86 3v43_A Histone acetyltransfera 61.5 4 0.00014 34.1 2.3 55 284-346 5-62 (112)
87 2jun_A Midline-1; B-BOX, TRIM, 60.6 3.3 0.00011 33.0 1.5 35 283-331 2-36 (101)
88 1fp0_A KAP-1 corepressor; PHD 58.6 2 7E-05 35.6 0.0 48 283-347 24-71 (88)
89 1mm2_A MI2-beta; PHD, zinc fin 57.4 1.8 6E-05 32.9 -0.6 49 282-347 7-55 (61)
90 1weo_A Cellulose synthase, cat 56.8 11 0.00038 31.9 4.1 55 283-350 15-69 (93)
91 1weu_A Inhibitor of growth fam 55.1 3.5 0.00012 34.2 0.9 29 319-349 57-86 (91)
92 2ysm_A Myeloid/lymphoid or mix 55.0 1.2 4.2E-05 36.8 -1.9 31 317-347 73-103 (111)
93 2e6r_A Jumonji/ARID domain-con 53.4 1.8 6.3E-05 35.4 -1.1 54 280-347 12-65 (92)
94 2yt5_A Metal-response element- 52.1 0.9 3.1E-05 34.3 -2.9 55 282-348 4-61 (66)
95 3v43_A Histone acetyltransfera 50.7 3.4 0.00012 34.5 0.1 30 318-347 82-111 (112)
96 2ri7_A Nucleosome-remodeling f 50.6 2.1 7E-05 37.7 -1.3 52 283-348 7-59 (174)
97 2puy_A PHD finger protein 21A; 49.6 1.8 6.1E-05 32.5 -1.6 49 282-347 3-51 (60)
98 2e6s_A E3 ubiquitin-protein li 48.4 3 0.0001 33.3 -0.5 30 318-347 46-76 (77)
99 1wev_A Riken cDNA 1110020M19; 46.7 0.71 2.4E-05 37.6 -4.5 33 318-350 38-74 (88)
100 1wee_A PHD finger family prote 46.5 2.6 8.7E-05 32.7 -1.2 52 282-347 14-65 (72)
101 3shb_A E3 ubiquitin-protein li 46.1 3.5 0.00012 33.1 -0.5 30 318-347 46-76 (77)
102 2ro1_A Transcription intermedi 45.9 4.2 0.00014 37.0 -0.1 30 318-347 19-48 (189)
103 1xwh_A Autoimmune regulator; P 44.0 2 6.9E-05 32.9 -2.1 50 282-348 6-55 (66)
104 2lv9_A Histone-lysine N-methyl 43.2 5.9 0.0002 32.6 0.4 29 318-347 47-75 (98)
105 3ask_A E3 ubiquitin-protein li 39.4 5 0.00017 38.4 -0.7 30 318-347 194-224 (226)
106 2kgg_A Histone demethylase jar 38.6 1.9 6.4E-05 31.7 -3.0 48 286-346 4-52 (52)
107 1e8j_A Rubredoxin; iron-sulfur 38.2 28 0.00096 26.1 3.4 18 282-299 1-18 (52)
108 2kn9_A Rubredoxin; metalloprot 37.4 24 0.00083 28.9 3.2 20 282-301 25-44 (81)
109 2ku3_A Bromodomain-containing 36.3 13 0.00044 29.2 1.4 52 282-347 14-65 (71)
110 1wen_A Inhibitor of growth fam 36.3 6.4 0.00022 30.9 -0.4 29 319-349 37-66 (71)
111 2v3b_B Rubredoxin 2, rubredoxi 35.6 28 0.00096 26.4 3.1 18 283-300 2-19 (55)
112 4rxn_A Rubredoxin; electron tr 35.4 25 0.00085 26.7 2.8 16 282-297 1-16 (54)
113 3mjh_B Early endosome antigen 35.0 9.7 0.00033 26.7 0.4 15 282-296 3-17 (34)
114 2ko5_A Ring finger protein Z; 34.4 8.6 0.0003 32.9 0.1 28 316-347 41-69 (99)
115 2l43_A N-teminal domain from h 33.9 14 0.00046 30.0 1.2 51 282-347 23-74 (88)
116 1dx8_A Rubredoxin; electron tr 30.8 33 0.0011 27.1 2.9 19 281-299 4-22 (70)
117 1wem_A Death associated transc 29.4 5.8 0.0002 30.8 -1.7 50 283-347 15-69 (76)
118 1s24_A Rubredoxin 2; electron 28.9 38 0.0013 28.1 3.1 21 280-300 31-51 (87)
119 3asl_A E3 ubiquitin-protein li 28.3 7.1 0.00024 30.4 -1.3 30 318-347 38-68 (70)
120 2l4z_A DNA endonuclease RBBP8, 27.0 22 0.00075 29.9 1.3 30 283-328 60-89 (123)
121 2vpb_A Hpygo1, pygopus homolog 27.0 22 0.00075 27.4 1.2 52 282-346 6-64 (65)
122 4gne_A Histone-lysine N-methyl 26.2 14 0.00047 31.4 -0.1 28 318-347 34-61 (107)
123 2vnf_A ING 4, P29ING4, inhibit 25.5 6.1 0.00021 29.9 -2.1 27 319-347 31-58 (60)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 24.4 45 0.0016 26.7 2.7 30 318-347 7-43 (140)
125 2jmi_A Protein YNG1, ING1 homo 24.2 6.1 0.00021 32.7 -2.5 26 319-346 47-74 (90)
126 1yuz_A Nigerythrin; rubrythrin 24.1 18 0.00061 33.3 0.3 10 341-350 188-197 (202)
127 2kwj_A Zinc finger protein DPF 23.8 7.3 0.00025 32.6 -2.2 30 318-347 78-107 (114)
128 2g6q_A Inhibitor of growth pro 23.5 7.7 0.00026 29.7 -1.9 28 319-348 32-60 (62)
129 3ql9_A Transcriptional regulat 23.3 47 0.0016 29.1 2.8 30 318-347 74-110 (129)
130 3o70_A PHD finger protein 13; 23.1 8.4 0.00029 29.9 -1.8 49 283-347 18-66 (68)
131 1zfo_A LAsp-1; LIM domain, zin 22.7 14 0.00049 24.5 -0.5 28 285-328 4-31 (31)
132 1x62_A C-terminal LIM domain p 22.6 20 0.0007 27.2 0.3 30 282-328 13-42 (79)
133 3pwf_A Rubrerythrin; non heme 22.3 21 0.0007 32.2 0.3 10 341-350 155-164 (170)
134 3m62_A Ubiquitin conjugation f 21.9 73 0.0025 36.3 4.6 62 283-366 890-953 (968)
135 2gmg_A Hypothetical protein PF 21.3 35 0.0012 29.3 1.5 25 315-348 69-93 (105)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.09 E-value=5.1e-11 Score=98.06 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=42.6
Q ss_pred ccccccccccccccccccccccccc-CCccccceeccCchHhHHHHHHHHhccCC-CCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGA-NNELSVAAVLVCGHVYHAECLEIMTVDTD-KYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~-~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~-~~dp~CPIC~~ 347 (452)
....|+||.+.|.....+....... .....++.+|+|||+||.+||++|+...+ .....||+|+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 3458999999997643221110000 11123455889999999999999995332 24578999997
No 2
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.8e-11 Score=91.90 Aligned_cols=55 Identities=22% Similarity=0.519 Sum_probs=42.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKM 355 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL 355 (452)
+...|+||.+.|... ..+.+|+|||+||.+||.+|+... ..||+|+.....+.++
T Consensus 14 ~~~~C~IC~~~~~~~--------------~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 14 LHELCAVCLEDFKPR--------------DELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CSCBCSSSCCBCCSS--------------SCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSSCCSC
T ss_pred CCCCCcCCCcccCCC--------------CcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccccccc
Confidence 567899999998542 245678999999999999999643 5899999865554443
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.00 E-value=8.3e-11 Score=84.93 Aligned_cols=49 Identities=33% Similarity=0.642 Sum_probs=39.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+...|+||.+.|... ...+.+|+|||+||.+||++|+... ..||+|+..
T Consensus 4 ~~~~C~IC~~~~~~~-------------~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTS-------------RVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTT-------------TSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCC-------------CcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 567899999988531 1356788999999999999999743 689999973
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=5.9e-11 Score=91.49 Aligned_cols=49 Identities=29% Similarity=0.668 Sum_probs=39.7
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.+...|+||.+.|... ..+.+|+|||+||.+||++|+.. ...||+|+..
T Consensus 21 ~~~~~C~IC~~~~~~~--------------~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESR--------------QLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBT--------------CEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCeECCcccCCC--------------CeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 3667899999988532 25678899999999999999964 3689999974
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.5e-10 Score=91.74 Aligned_cols=61 Identities=21% Similarity=0.556 Sum_probs=38.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
++...|+||...|.+.-+=-... +.. +..++..++|||+||.+||++|+... ..||+|+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~-~~~-~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~ 73 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAE-NKQ-EDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQD 73 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHH-TCT-TTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCB
T ss_pred CCCCCCcccChhhhccCcccccc-cCC-CceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCC
Confidence 46777999988885421100000 011 11233444599999999999999643 589999973
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.99 E-value=1e-10 Score=90.36 Aligned_cols=50 Identities=20% Similarity=0.480 Sum_probs=39.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|... ..+.+|+|||+||.+||.+|+.. ...||+|+...
T Consensus 13 ~~~~~C~IC~~~~~~~--------------~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKEDYALG--------------ESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSCCCTT--------------SCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCC
T ss_pred CCCCCCeeCCccccCC--------------CCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCcc
Confidence 3677899999988532 24567899999999999999953 36899999843
No 7
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.98 E-value=1.2e-10 Score=84.33 Aligned_cols=48 Identities=33% Similarity=0.763 Sum_probs=37.7
Q ss_pred cccccccccccccccccccccccccCCccccceecc-CchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV-CGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp-CGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+...|+||.+.|... ..+.+|+ |||+||.+||++|+.. ...||+|+..
T Consensus 4 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDG--------------EEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTT--------------SCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCC
T ss_pred CCCcCccCCccccCC--------------CceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCE
Confidence 567899999988542 2345676 9999999999999963 3689999963
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.98 E-value=1.1e-10 Score=87.99 Aligned_cols=53 Identities=23% Similarity=0.470 Sum_probs=40.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.+...|+||.+.|... +. +...+.+++|||+||.+||++|+... ..||+|+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 60 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKK 60 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------HT--TTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCB
T ss_pred CCCCCCcccChhhhcc--------cc--ccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCc
Confidence 4678899999998652 00 11345688999999999999999643 689999983
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=87.85 Aligned_cols=49 Identities=29% Similarity=0.657 Sum_probs=39.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|... ..+.+|+|||+||..||.+|+... ..||+|+...
T Consensus 13 ~~~~C~IC~~~~~~~--------------~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~ 61 (69)
T 2kiz_A 13 TEEKCTICLSILEEG--------------EDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDI 61 (69)
T ss_dssp CCCSBTTTTBCCCSS--------------SCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBS
T ss_pred CCCCCeeCCccccCC--------------CcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccc
Confidence 567899999987432 245678999999999999999643 5799999743
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=2.4e-10 Score=85.24 Aligned_cols=54 Identities=22% Similarity=0.459 Sum_probs=40.9
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|.... .....+.+++|||+||.+||++|+.. ...||+|+...
T Consensus 13 ~~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 66 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKI 66 (69)
T ss_dssp TCCCCCTTTCCCHHHHT----------TTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCCcccCccccccc----------cccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCcc
Confidence 47788999999986520 01124467899999999999999964 36899999743
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.96 E-value=1.7e-10 Score=92.83 Aligned_cols=48 Identities=27% Similarity=0.626 Sum_probs=38.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+...|+||.+.|... ..+.+|+|||+||..||++|+.. ...||+|+..
T Consensus 39 ~~~~C~IC~~~~~~~--------------~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG--------------DVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTT--------------CEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCB
T ss_pred CCCCCcccChhhcCC--------------CcEEecCCCChHHHHHHHHHHHc----CCcCcCcCcc
Confidence 567899999988532 24667899999999999999963 3589999973
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.93 E-value=3.5e-10 Score=95.45 Aligned_cols=63 Identities=21% Similarity=0.458 Sum_probs=41.8
Q ss_pred ccccccccccccccccccccc-cccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCS-QRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss-~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
++...|+||...|...-+-.- ......++.-.+..|+|||+||.+||++|+.. ...||+|+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~ 98 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNRE 98 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSB
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCc
Confidence 466789999998875311000 00001233345778899999999999999963 3689999973
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.93 E-value=1.4e-10 Score=85.47 Aligned_cols=52 Identities=23% Similarity=0.518 Sum_probs=39.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+...|+||.+.|.... . ....+.+++|||+||.+|+++|+.. ...||+|+..
T Consensus 2 ~~~~C~IC~~~~~~~~--------~--~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 53 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIV--------Q--NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 53 (64)
T ss_dssp CCCBCTTTCCBHHHHH--------H--TTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCccChhhhCcc--------c--cCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCcc
Confidence 4568999999986520 0 1124567899999999999999964 3689999983
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8.4e-10 Score=84.38 Aligned_cols=49 Identities=22% Similarity=0.513 Sum_probs=39.2
Q ss_pred CcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+..+...|+||.+.|.. ..+|+|||+||.+||++|+.. ...||+|+...
T Consensus 11 ~~~~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 59 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVH-----------------PVSLPCKHVFCYLCVKGASWL----GKRCALCRQEI 59 (71)
T ss_dssp SSSSCCBCSSSSSBCSS-----------------EEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBC
T ss_pred cCCCCCCCccCCcccCC-----------------CEEccCCCHHHHHHHHHHHHC----CCcCcCcCchh
Confidence 44578899999988742 245799999999999999963 36899999844
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.85 E-value=3.9e-10 Score=84.76 Aligned_cols=49 Identities=22% Similarity=0.543 Sum_probs=38.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcch
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQ 351 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~ 351 (452)
+...|+||.+.+.. .+.+++|||+||.+|+.+|+.. ...||+|+.....
T Consensus 4 ~~~~C~IC~~~~~~----------------~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN----------------YSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS----------------CEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC----------------CcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 45679999988742 2357899999999999999963 3689999985543
No 16
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=2.3e-09 Score=80.46 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=39.1
Q ss_pred ccccccccccc-cccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSK-LLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k-~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
|+...|+||.+ .|... ...+.+++|||+||.+||++|+.+. ...||+|+...
T Consensus 1 m~~~~C~IC~~~~~~~~-------------~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~ 53 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRNP-------------SLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPL 53 (65)
T ss_dssp CCTTCCSTTTTHHHHCS-------------SCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCC
T ss_pred CCCCcCCcCCCCccCCC-------------ccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCcc
Confidence 46788999999 77542 1123467999999999999997543 35799999843
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.1e-09 Score=82.87 Aligned_cols=54 Identities=26% Similarity=0.554 Sum_probs=40.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|... + ....+|+|||+||.+||++|+.... ....||+|+...
T Consensus 13 ~~~~~C~IC~~~~~~~------------~-~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 13 REVLECPICMESFTEE------------Q-LRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKIT 66 (88)
T ss_dssp CSCCBCTTTCCBCCTT------------S-SCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCB
T ss_pred cCCCCCccCCcccccc------------C-CCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcc
Confidence 3677899999988542 1 1245789999999999999986431 246899999843
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.3e-09 Score=80.64 Aligned_cols=47 Identities=19% Similarity=0.480 Sum_probs=37.6
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. .+.+++|||+||.+||++|+.. ...||+|+...
T Consensus 14 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (72)
T 2djb_A 14 PYILCSICKGYLID----------------ATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVV 60 (72)
T ss_dssp GGGSCTTTSSCCSS----------------CEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCC
T ss_pred CCCCCCCCChHHHC----------------cCEECCCCCHHHHHHHHHHHHc----CCcCCCcCccc
Confidence 67889999988743 2334599999999999999964 36899999844
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.3e-09 Score=79.84 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=38.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ..+|+|||+||.+||.+|+... .....||+|+...
T Consensus 19 ~~~~C~IC~~~~~~-----------------~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSBCSS-----------------EEECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCC
T ss_pred cCCEeccCCcccCC-----------------eEEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcC
Confidence 67789999988742 2356999999999999999632 2347899999843
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=4.1e-09 Score=78.45 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=35.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
.+...|+||.+.|.+ ..+|+|||+||.+||++|+... .....||+|
T Consensus 18 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK-----------------PVTIDCGHNFCLKCITQIGETS-CGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS-----------------CEECTTSSEECHHHHHHHHHHC-SSCCCCSCC
T ss_pred ccCCCCCcCCchhCC-----------------eEEeCCCCcchHHHHHHHHHcC-CCCCcCcCC
Confidence 367789999988742 2356999999999999999642 234689998
No 21
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=9.4e-09 Score=74.60 Aligned_cols=45 Identities=29% Similarity=0.740 Sum_probs=35.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPIC 345 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC 345 (452)
+...|+||.+.+.+ + .+|+|||+||.+||++|+...+ ....||+|
T Consensus 14 ~~~~C~IC~~~~~~---------------p--~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---------------P--VIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---------------C--CCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred cCCCCccCCcccCc---------------c--EeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 67789999998753 1 2479999999999999975422 34789998
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.72 E-value=1.5e-09 Score=93.75 Aligned_cols=61 Identities=21% Similarity=0.456 Sum_probs=1.1
Q ss_pred ccccccccccccccccccccc-ccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQ-RIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~-~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|+||...|...-+-... .....+|.-.+..++|||+||.+||++|+.. ...||+|+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~ 108 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNR 108 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCC
Confidence 557899999998753110000 0001123335566799999999999999964 368999997
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=3e-09 Score=80.54 Aligned_cols=46 Identities=24% Similarity=0.629 Sum_probs=37.3
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.+. + .+|+|||+||.+|+.+|+. ....||+|+...
T Consensus 13 ~~~~~C~IC~~~~~--------------~----~~~~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 13 TDEEECCICMDGRA--------------D----LILPCAHSFCQKCIDKWSD----RHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCSSSCCSCC--------------S----EEETTTEEECHHHHHHSSC----CCSSCHHHHHCT
T ss_pred CCCCCCeeCCcCcc--------------C----cccCCCCcccHHHHHHHHH----CcCcCCCcCCcc
Confidence 36778999998763 1 4789999999999999986 346899999744
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.69 E-value=6.2e-09 Score=80.48 Aligned_cols=49 Identities=31% Similarity=0.790 Sum_probs=38.5
Q ss_pred ccccccccccccccccccccccccccCCccccceecc-CchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV-CGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp-CGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|.. ..+|+ |||+||.+||++|+.... ...||+|+...
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCCTT-----------------CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSS
T ss_pred CCCCCCcCCChHHhC-----------------CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcC
Confidence 377899999988753 12478 999999999999996432 35899999843
No 25
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=7.2e-09 Score=80.84 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=38.3
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
.+...|+||.+.|.. ..+++|||+||..||.+|+.. ...||+|+....
T Consensus 13 ~~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-----------------PVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-----------------EEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-----------------eeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 356789999998743 125899999999999999963 368999998543
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=8.2e-09 Score=77.67 Aligned_cols=48 Identities=23% Similarity=0.560 Sum_probs=37.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.+.. ++ +++|||+||.+||++|+.. ....||+|+...
T Consensus 13 ~~~~~C~IC~~~~~~---------------p~--~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCS---------------PK--QTECGHRFCESCMAALLSS---SSPKCTACQESI 60 (66)
T ss_dssp CCCEECTTTCCEESS---------------CC--CCSSSCCCCHHHHHHHHTT---SSCCCTTTCCCC
T ss_pred CcCCCCCCCChHhcC---------------ee--ECCCCCHHHHHHHHHHHHh---CcCCCCCCCcCC
Confidence 367889999998753 12 3799999999999999952 346899999843
No 27
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=82.58 Aligned_cols=47 Identities=28% Similarity=0.651 Sum_probs=37.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. .+.+++|||+||..|+.+|+.. ...||+|+...
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 67 (99)
T 2y43_A 21 DLLRCGICFEYFNI----------------AMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTV 67 (99)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBC
T ss_pred CCCCcccCChhhCC----------------cCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcC
Confidence 56789999998743 2233489999999999999963 36899999844
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.66 E-value=6e-09 Score=89.45 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=36.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ..+|+|||+||.+||.+|+.. ...||+|+...
T Consensus 52 ~~~~C~iC~~~~~~-----------------~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~ 97 (138)
T 4ayc_A 52 NELQCIICSEYFIE-----------------AVTLNCAHSFCSYCINEWMKR----KIECPICRKDI 97 (138)
T ss_dssp HHSBCTTTCSBCSS-----------------EEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBC
T ss_pred ccCCCcccCcccCC-----------------ceECCCCCCccHHHHHHHHHc----CCcCCCCCCcC
Confidence 34579999988742 236799999999999999863 36799999854
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.65 E-value=1.1e-08 Score=78.89 Aligned_cols=47 Identities=13% Similarity=0.306 Sum_probs=37.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.+ + .+++|||+|+..||++|+... ...||+|+...
T Consensus 7 ~~~~C~IC~~~~~~---------------P--v~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~ 53 (78)
T 1t1h_A 7 EYFRCPISLELMKD---------------P--VIVSTGQTYERSSIQKWLDAG---HKTCPKSQETL 53 (78)
T ss_dssp SSSSCTTTSCCCSS---------------E--EEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBC
T ss_pred ccCCCCCccccccC---------------C--EEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCC
Confidence 67889999998853 2 246999999999999999632 46899999843
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.64 E-value=1.4e-08 Score=80.50 Aligned_cols=49 Identities=29% Similarity=0.739 Sum_probs=38.7
Q ss_pred ccccccccccccccccccccccccccCCccccceecc-CchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV-CGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp-CGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|.. ..+|+ |||+|+..||++|+... ....||+|+...
T Consensus 11 ~~~~~C~IC~~~~~~-----------------p~~~~~CgH~fC~~Ci~~~~~~~--~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTD-----------------AVVIPCCGNSYCDECIRTALLES--DEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSS-----------------CEECTTTCCEECHHHHHHHHHHC--TTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcC-----------------ceECCCCCCHHHHHHHHHHHHhc--CCCcCcCCCCcC
Confidence 367899999998853 12578 99999999999998643 236899999854
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.63 E-value=7.9e-09 Score=84.45 Aligned_cols=48 Identities=17% Similarity=0.428 Sum_probs=38.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ++..++|||+||..||.+|+.... ..||+|+...
T Consensus 21 ~~~~C~IC~~~~~~----------------p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~ 68 (100)
T 3lrq_A 21 EVFRCFICMEKLRD----------------ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPL 68 (100)
T ss_dssp HHTBCTTTCSBCSS----------------EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBC
T ss_pred CCCCCccCCccccC----------------ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcC
Confidence 67889999999853 334489999999999999997442 5899999844
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.60 E-value=9.1e-09 Score=84.75 Aligned_cols=51 Identities=24% Similarity=0.502 Sum_probs=39.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|+||.+.|.+. +. +...+.+++|||+||.+||++|+... ..||+|+.
T Consensus 6 ~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~ 56 (133)
T 4ap4_A 6 GTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRK 56 (133)
T ss_dssp CSCBCTTTCCBHHHH--------HH--TTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCC
T ss_pred CCCCCcccChhhhCc--------cc--cccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCC
Confidence 667899999998642 00 11244688999999999999999633 58999998
No 33
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1.2e-08 Score=82.20 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=38.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCc-----hHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-----HVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-----HvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|.||...+.+. + .+ ++||+ |+||.+||++|+...+ ...||+|+...
T Consensus 14 ~~~~C~IC~~~~~~~------------~--~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~ 68 (80)
T 2d8s_A 14 SQDICRICHCEGDDE------------S--PL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEF 68 (80)
T ss_dssp TSCCCSSSCCCCCSS------------S--CE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBC
T ss_pred CCCCCeEcCccccCC------------C--ee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCee
Confidence 667899999887431 1 12 68996 9999999999997542 36899999843
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.59 E-value=1.5e-08 Score=83.16 Aligned_cols=47 Identities=21% Similarity=0.527 Sum_probs=37.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. .+.+++|||+||..||.+|+.. ...||+|+...
T Consensus 14 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (108)
T 2ckl_A 14 PHLMCVLCGGYFID----------------ATTIIECLHSFCKTCIVRYLET----SKYCPICDVQV 60 (108)
T ss_dssp GGTBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBS
T ss_pred CcCCCccCChHHhC----------------cCEeCCCCChhhHHHHHHHHHh----CCcCcCCCccc
Confidence 67889999998743 2334599999999999999964 36899999843
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=77.40 Aligned_cols=51 Identities=27% Similarity=0.621 Sum_probs=38.8
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC---CCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD---KYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~---~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|.. + .+|+|||+||.+||.+|+.... .....||+|+...
T Consensus 10 ~~~~~C~IC~~~~~~---------------p--~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 10 QEEVTCPICLELLTE---------------P--LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCCCEETTTTEECSS---------------C--CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred ccCCCCcCCCcccCC---------------e--eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 367889999998743 1 2479999999999999986521 1247899999844
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.58 E-value=1.8e-08 Score=83.29 Aligned_cols=51 Identities=27% Similarity=0.638 Sum_probs=40.1
Q ss_pred CCcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 279 SPSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 279 sps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+..+...|+||.+.|.. ..+|+|||+|+..||.+|+... ...||+|+...
T Consensus 10 ~~~~~~~~C~iC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~ 60 (115)
T 3l11_A 10 IPSLSECQCGICMEILVE-----------------PVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRV 60 (115)
T ss_dssp CCCHHHHBCTTTCSBCSS-----------------CEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBC
T ss_pred cCCCCCCCCccCCcccCc-----------------eeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCccc
Confidence 344578899999998743 2356999999999999999642 36899999854
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.56 E-value=2e-08 Score=88.03 Aligned_cols=48 Identities=21% Similarity=0.477 Sum_probs=38.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ++.+++|||+||.+||++|+... ...||+|+...
T Consensus 53 ~~~~C~IC~~~~~~----------------p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~ 100 (165)
T 2ckl_B 53 SELMCPICLDMLKN----------------TMTTKECLHRFCADCIITALRSG---NKECPTCRKKL 100 (165)
T ss_dssp HHHBCTTTSSBCSS----------------EEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBC
T ss_pred CCCCCcccChHhhC----------------cCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcC
Confidence 66789999998753 34446999999999999999742 46799999854
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.55 E-value=1.1e-08 Score=84.25 Aligned_cols=52 Identities=23% Similarity=0.480 Sum_probs=39.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
+...|+||.+.|.+. +. ....+..++|||+||..||++|+.. ...||+|+..
T Consensus 71 ~~~~C~iC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 122 (133)
T 4ap4_A 71 GTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKK 122 (133)
T ss_dssp SSCBCTTTCCBHHHH--------HH--TTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCCCCCccccc--------cc--cCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCc
Confidence 677899999988642 00 1123457899999999999999964 3589999983
No 39
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.55 E-value=2.4e-08 Score=76.78 Aligned_cols=50 Identities=24% Similarity=0.557 Sum_probs=38.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC--CCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD--KYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~--~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. + .+|+|||+||.+||.+|+.... .....||+|+...
T Consensus 18 ~~~~C~IC~~~~~~---------------p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecw_A 18 EEVTCPICLELLKE---------------P--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69 (85)
T ss_dssp TTTSCTTTCSCCSS---------------C--EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCC
T ss_pred cCCCCcCCChhhCc---------------c--eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcC
Confidence 56789999988743 1 2689999999999999986531 1247899999743
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.54 E-value=3.6e-08 Score=82.67 Aligned_cols=48 Identities=23% Similarity=0.447 Sum_probs=37.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
+...|+||.+.|.. ..+|+|||+||..||..|+.. ....||+|+....
T Consensus 51 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 51 ETFQCICCQELVFR-----------------PITTVCQHNVCKDCLDRSFRA---QVFSCPACRYDLG 98 (124)
T ss_dssp HHTBCTTTSSBCSS-----------------EEECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCC
T ss_pred cCCCCCcCChHHcC-----------------cEEeeCCCcccHHHHHHHHhH---CcCCCCCCCccCC
Confidence 56789999998753 124699999999999999962 2358999998543
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.8e-08 Score=77.44 Aligned_cols=50 Identities=32% Similarity=0.732 Sum_probs=38.1
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC--CCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT--DKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~--~~~dp~CPIC~~ge 349 (452)
+...|+||.+.+.. ..+|+|||+||.+||.+|+... ......||+|+...
T Consensus 18 ~~~~C~IC~~~~~~-----------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-----------------PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCCTTTCSCCSS-----------------CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCCcccCC-----------------ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 67789999998743 1246999999999999998641 11247899999743
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=4.6e-08 Score=79.57 Aligned_cols=49 Identities=20% Similarity=0.553 Sum_probs=37.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.+.. + .+++|||+||.+||.+|+.... ....||+|+...
T Consensus 20 ~~~~C~IC~~~~~~---------------p--~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~ 68 (112)
T 1jm7_A 20 KILECPICLELIKE---------------P--VSTKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDI 68 (112)
T ss_dssp HHTSCSSSCCCCSS---------------C--CBCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCC
T ss_pred CCCCCcccChhhcC---------------e--EECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcC
Confidence 45689999988743 1 2379999999999999996432 236899999843
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.37 E-value=1.3e-07 Score=78.95 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=38.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
.+...|+||.+.|.. + .+++|||+|+..||.+|+.... ..||+|+....
T Consensus 16 ~~~~~C~IC~~~~~~---------------p--~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~ 64 (118)
T 3hct_A 16 ESKYECPICLMALRE---------------A--VQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILL 64 (118)
T ss_dssp CGGGBCTTTCSBCSS---------------E--EECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCC
T ss_pred CCCCCCCcCChhhcC---------------e--EECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcC
Confidence 367899999998743 1 2469999999999999986432 37999998543
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.33 E-value=1.4e-07 Score=83.10 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=37.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. ++ +|+|||+|+..||.+|+.. ....||+|+...
T Consensus 77 ~~~~C~IC~~~~~~---------------pv--~~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~ 123 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---------------PV--TTECFHNVCKDCLQRSFKA---QVFSCPACRHDL 123 (150)
T ss_dssp HHTBCTTTSSBCSS---------------EE--ECTTSCEEEHHHHHHHHHT---TCCBCTTTCCBC
T ss_pred cCCEeecCChhhcC---------------CE--EcCCCCchhHHHHHHHHHh---CCCcCCCCCccC
Confidence 56789999998753 12 4799999999999999964 235799999844
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.28 E-value=1.9e-07 Score=77.24 Aligned_cols=47 Identities=21% Similarity=0.491 Sum_probs=37.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.+.. ++ +++|||+||.+||++|+... ...||+|+...
T Consensus 22 ~~~~C~IC~~~~~~---------------p~--~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~ 68 (116)
T 1rmd_A 22 KSISCQICEHILAD---------------PV--ETSCKHLFCRICILRCLKVM---GSYCPSCRYPC 68 (116)
T ss_dssp HHTBCTTTCSBCSS---------------EE--ECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBC
T ss_pred CCCCCCCCCcHhcC---------------cE--EcCCCCcccHHHHHHHHhHC---cCcCCCCCCCC
Confidence 56789999988743 12 37999999999999999743 36799999843
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=8.2e-07 Score=71.32 Aligned_cols=47 Identities=26% Similarity=0.624 Sum_probs=36.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.||...|... +.-..|+|.||..||.+||... ....||+|+.
T Consensus 14 ~i~~C~IC~~~i~~g----------------~~C~~C~h~fH~~Ci~kWl~~~--~~~~CP~Cr~ 60 (74)
T 2ct0_A 14 AVKICNICHSLLIQG----------------QSCETCGIRMHLPCVAKYFQSN--AEPRCPHCND 60 (74)
T ss_dssp SSCBCSSSCCBCSSS----------------EECSSSCCEECHHHHHHHSTTC--SSCCCTTTCS
T ss_pred CCCcCcchhhHcccC----------------CccCCCCchhhHHHHHHHHHhc--CCCCCCCCcC
Confidence 567799999988521 1122899999999999999543 2368999997
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.22 E-value=6.1e-07 Score=71.68 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=37.9
Q ss_pred ccccccccccccccccccccccccccCCccccceec--cCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVL--VCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL--pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
.+...|+||.++++. ..++++ +|||.|+..||.++..+ ....||+|+....
T Consensus 9 ~~~~~CpICle~~~~---------------~d~~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 9 EDPVECPLCMEPLEI---------------DDINFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYP 61 (78)
T ss_dssp CCCCBCTTTCCBCCT---------------TTTTCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCS
T ss_pred ccCCcCCccCccCcc---------------ccccccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccC
Confidence 367889999997742 122334 59999999999999753 2468999998543
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.19 E-value=1.1e-06 Score=72.98 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=45.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAFK 361 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~lk 361 (452)
+...|+||.+.+.. || +++|||+|-..||++|+.. +..||+|+..... ..|.+ .+|+
T Consensus 28 ~~~~CpI~~~~m~d---------------PV--~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~-~~L~pn~~Lk 85 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---------------PV--RLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE-SMLEPVPELK 85 (100)
T ss_dssp TTTBCTTTCSBCSS---------------EE--EETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT-TSSEECHHHH
T ss_pred HhhCCcCccCcccC---------------Ce--ECCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh-hhceECHHHH
Confidence 78999999999854 23 4689999999999999963 4789999984432 23332 4566
Q ss_pred HHHHHH
Q 012995 362 AEAELR 367 (452)
Q Consensus 362 ~e~~lk 367 (452)
..++.-
T Consensus 86 ~~I~~~ 91 (100)
T 2kre_A 86 EQIQAW 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.18 E-value=2.2e-07 Score=72.33 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=37.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
+...|.||.+.+.. +..|+|||+ |..+|+.+| ..||+|+.......++|
T Consensus 23 ~~~~C~iC~~~~~~-----------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIA-----------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCC-----------------EEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSEEEECB
T ss_pred cCCCCCCCCCCCCC-----------------EEEcCCCChhHHHHhhhcC--------ccCCCcCcCccCcEEEe
Confidence 56789999987632 346799999 999999999 36999998665554443
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.18 E-value=8.2e-07 Score=71.21 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAFK 361 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~lk 361 (452)
+...|+||.+.++. +| +++|||+|-..||++|+.. +..||+|+...... .|.+ .+|+
T Consensus 13 ~~~~CpI~~~~m~d---------------PV--~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~-~l~pn~~L~ 70 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---------------PV--RLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTES-MLEPVPELK 70 (85)
T ss_dssp TTTBCTTTCSBCSS---------------EE--ECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGG-GCEECHHHH
T ss_pred hheECcccCchhcC---------------Ce--ECCCCCEECHHHHHHHHhc----CCCCCCCcCCCChH-hcchHHHHH
Confidence 78899999999854 22 5689999999999999963 36899999843321 3332 4555
Q ss_pred HHHHH
Q 012995 362 AEAEL 366 (452)
Q Consensus 362 ~e~~l 366 (452)
..++.
T Consensus 71 ~~i~~ 75 (85)
T 2kr4_A 71 EQIQA 75 (85)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.16 E-value=5.2e-07 Score=68.87 Aligned_cols=56 Identities=16% Similarity=0.421 Sum_probs=41.8
Q ss_pred CcccccccccccccccccccccccccccCCccccceec--cCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVL--VCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL--pCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
|..+...|.||.+.... +.++ ||||+ |-.+|+++|... ...||+|+.......++|
T Consensus 4 ~~~~~~~C~IC~~~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKN-----------------GCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp -CGGGSCCTTTSSSCSC-----------------EEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCEEEEEE
T ss_pred CCCCcCCCCcCCCCCCC-----------------EEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhceEeee
Confidence 44578889999976431 2334 99999 679999999853 357999999877766665
No 52
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.14 E-value=3.7e-06 Score=69.51 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=46.3
Q ss_pred cccccccccccccccccccccccccCCccccceeccCc-hHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-HVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAF 360 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-HvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~l 360 (452)
+...|+||.+.++. || +++|| |+|-..||++|+.+ +..||+|+...... .|.+ .+|
T Consensus 21 ~~~~CpI~~~~m~d---------------PV--~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~-~L~pn~~L 78 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---------------PV--VLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMD-QIRPNTEL 78 (98)
T ss_dssp TTTBCTTTCSBCSS---------------EE--ECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTT-TSEECHHH
T ss_pred HhcCCcCccccccC---------------Ce--ECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChh-hceEcHHH
Confidence 78899999999854 23 47999 99999999999963 46899999844322 3432 456
Q ss_pred HHHHHHH
Q 012995 361 KAEAELR 367 (452)
Q Consensus 361 k~e~~lk 367 (452)
+..++.-
T Consensus 79 k~~I~~~ 85 (98)
T 1wgm_A 79 KEKIQRW 85 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=2.9e-07 Score=76.80 Aligned_cols=44 Identities=27% Similarity=0.748 Sum_probs=35.9
Q ss_pred cccccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
+...|+||.+.|.. + .+| +|||+|+..||.+|+. ..||+|+...
T Consensus 21 ~~~~C~IC~~~~~~----------------p-v~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~ 65 (117)
T 1jm7_B 21 KLLRCSRCTNILRE----------------P-VCLGGCEHIFCSNCVSDCIG------TGCPVCYTPA 65 (117)
T ss_dssp HTTSCSSSCSCCSS----------------C-BCCCSSSCCBCTTTGGGGTT------TBCSSSCCBC
T ss_pred hCCCCCCCChHhhC----------------c-cEeCCCCCHHHHHHHHHHhc------CCCcCCCCcC
Confidence 56789999998753 1 245 9999999999999985 5799999844
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=8.8e-07 Score=68.83 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=36.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
+...|.||.+.+.. +..|+|||+ |..+|+++. ..||+|+.......++|
T Consensus 24 ~~~~C~IC~~~~~~-----------------~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 24 EEKLCKICMDRNIA-----------------IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHSCSSSCSSCCC-----------------BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCCCCBCC
T ss_pred CCCCCCcCCCCCCC-----------------EEEecCCCHHHHHHHhhCC--------CCCccCCceecCcEEEe
Confidence 45679999887632 345799999 999999754 36999998665555544
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=3.5e-07 Score=67.76 Aligned_cols=44 Identities=27% Similarity=0.546 Sum_probs=34.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||.+.|.. ..+|+|||+|+..||.+|. ..||+|+...
T Consensus 4 ~~~~~C~IC~~~~~~-----------------p~~l~CgH~fC~~Ci~~~~-------~~CP~Cr~~~ 47 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-----------------PKLLPCLHTLCSGCLEASG-------MQCPICQAPW 47 (56)
T ss_dssp CCCSSCSSSCSSCBC-----------------CSCSTTSCCSBTTTCSSSS-------SSCSSCCSSS
T ss_pred ccCCCceEeCCccCC-----------------eEEcCCCCcccHHHHccCC-------CCCCcCCcEe
Confidence 366789999988742 2368999999999998842 4799999743
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.03 E-value=1.2e-06 Score=89.00 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=36.6
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
...|+||.+.+. .+.+++|||+||..|+.+|+.. ....||+|+....
T Consensus 332 ~~~C~ICle~~~-----------------~pv~lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 332 FQLCKICAENDK-----------------DVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIK 378 (389)
T ss_dssp SSBCTTTSSSBC-----------------CEEEETTCCEECHHHHHHHHHH---TCSBCTTTCCBCC
T ss_pred CCCCCccCcCCC-----------------CeEEeCCCChhhHHHHHHHHhc---CCCCCCCCCCccC
Confidence 368999987763 2356899999999999999863 2357999998543
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.01 E-value=1.3e-06 Score=66.52 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=41.2
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
.....|.||.+.... .++..+||||+ |-.+|+.+|... ...||+|+.......++|
T Consensus 5 ~~~~~C~IC~~~~~~---------------~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---------------GNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGGSBCTTTSSSBSC---------------EEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCEEEEEE
T ss_pred CcCCCCcccCCcCCC---------------eEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhceEEEe
Confidence 466789999876431 12222399998 999999999853 357999999777766665
No 58
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=5.6e-06 Score=67.24 Aligned_cols=68 Identities=21% Similarity=0.368 Sum_probs=44.8
Q ss_pred ccccccccccccccccccccccccccCCccccceecc-CchHhHHHHHHHHhccC--CCCCCCCCC--cccCcchhhhhh
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLV-CGHVYHAECLEIMTVDT--DKYDPACPI--CVVGEKQVSKMS 356 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLp-CGHvFHaeCLeqwt~e~--~~~dp~CPI--C~~geK~~~kL~ 356 (452)
.+...|+||.+.|.. || +++ |||+|-..||++|+.+. ....+.||+ |....-....|.
T Consensus 5 ~~~~~CPI~~~~~~d---------------PV--~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~ 67 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---------------PV--KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67 (94)
T ss_dssp SSCCBCTTTCSBCSS---------------EE--EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEE
T ss_pred CcEeECcCcCchhcC---------------CE--EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCc
Confidence 477889999999853 22 454 99999999999999653 123468999 985311222344
Q ss_pred H-HHHHHHHHH
Q 012995 357 R-KAFKAEAEL 366 (452)
Q Consensus 357 ~-~~lk~e~~l 366 (452)
+ .+|+..++.
T Consensus 68 pn~~L~~~I~~ 78 (94)
T 2yu4_A 68 QDEALRRAIEN 78 (94)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 2 345555444
No 59
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.96 E-value=3.3e-06 Score=67.88 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=45.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC----CCCCCCCCC--cccCcchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT----DKYDPACPI--CVVGEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~----~~~dp~CPI--C~~geK~~~kL~ 356 (452)
+...|+||.+.+... ..+.+++|||.|..+||.+++... ......||. |+..........
T Consensus 4 ~~~~C~IC~~~~~~~--------------~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 4 GSSGCKLCLGEYPVE--------------QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp SBCCCSSSCCCCBGG--------------GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCcCCcccCcccccc--------------cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 567899999887431 123345799999999999997531 123468999 997521122233
Q ss_pred HHHHHHHHHHHHhh
Q 012995 357 RKAFKAEAELRAKY 370 (452)
Q Consensus 357 ~~~lk~e~~lk~rn 370 (452)
++.|..++.-+.+.
T Consensus 70 ~~ll~~~~~~ky~~ 83 (94)
T 1wim_A 70 ECMVAAEIMQRYKK 83 (94)
T ss_dssp HHHSCHHHHHHHHH
T ss_pred HHHCCHHHHHHHHH
Confidence 44444444444333
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.94 E-value=1.3e-06 Score=76.21 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=37.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.+...|+||...|.+ + ..++|||+|+..||.+|+... ...||+|+..
T Consensus 29 ~~~~~C~IC~~~~~~---------------p--v~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~ 75 (141)
T 3knv_A 29 EAKYLCSACRNVLRR---------------P--FQAQCGHRYCSFCLASILSSG---PQNCAACVHE 75 (141)
T ss_dssp CGGGBCTTTCSBCSS---------------E--EECTTSCEEEHHHHHHHGGGS---CEECHHHHHT
T ss_pred CcCcCCCCCChhhcC---------------c--EECCCCCccCHHHHHHHHhcC---CCCCCCCCCc
Confidence 367889999999853 1 236999999999999999633 2579999973
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.87 E-value=5.3e-06 Score=75.86 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=44.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHH
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAF 360 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~l 360 (452)
.+...|+||.+.+.. || +++|||+|-..||+.|+... ...||+|+...... .|.+ .+|
T Consensus 206 ~~~~~c~i~~~~~~d---------------Pv--~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~-~l~~n~~l 264 (281)
T 2c2l_A 206 PDYLCGKISFELMRE---------------PC--ITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQE-QLIPNLAM 264 (281)
T ss_dssp CSTTBCTTTCSBCSS---------------EE--ECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGG-GCEECHHH
T ss_pred CcccCCcCcCCHhcC---------------Ce--ECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchh-cCcccHHH
Confidence 478899999999854 23 57899999999999999643 24599999855322 3442 345
Q ss_pred HHHHH
Q 012995 361 KAEAE 365 (452)
Q Consensus 361 k~e~~ 365 (452)
+..++
T Consensus 265 ~~~i~ 269 (281)
T 2c2l_A 265 KEVID 269 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.85 E-value=5.5e-06 Score=72.69 Aligned_cols=48 Identities=25% Similarity=0.421 Sum_probs=38.0
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
.+...|+||...|.. ++ .++|||+|...||.+|+.... ..||+|+...
T Consensus 16 ~~~~~C~IC~~~~~~---------------pv--~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~ 63 (170)
T 3hcs_A 16 ESKYECPICLMALRE---------------AV--QTPCGHRFCKACIIKSIRDAG---HKCPVDNEIL 63 (170)
T ss_dssp CGGGBCTTTCSBCSS---------------EE--ECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBC
T ss_pred CCCCCCCCCChhhcC---------------cE--ECCCCCHHHHHHHHHHHHhCC---CCCCCCccCc
Confidence 477899999998853 22 369999999999999986432 4799999844
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=6.1e-06 Score=63.97 Aligned_cols=51 Identities=20% Similarity=0.442 Sum_probs=40.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR 357 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~ 357 (452)
.+...|.||.+... .+..|||||+ |..+|+... ..||+|+.......++|.
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhceEEeec
Confidence 36778999987642 3567899999 999999952 369999998888877773
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.60 E-value=9.8e-06 Score=64.36 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=39.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR 357 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~ 357 (452)
+...|.||.+.+. .+..|||||+ |-.+|+..|. .||+|+.......++|.
T Consensus 17 ~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhCeEEEEe
Confidence 4567999987653 2456899999 9999999874 69999997776666663
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.50 E-value=3.3e-05 Score=59.15 Aligned_cols=46 Identities=35% Similarity=0.649 Sum_probs=33.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCc--h---HhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG--H---VYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG--H---vFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|.||..... ++ . ++||. | .||.+||++|+... ....||+|+.
T Consensus 5 ~~~~CrIC~~~~~-------------~~--l--~~PC~C~gs~~~~H~~Cl~~W~~~~--~~~~C~~C~~ 55 (60)
T 1vyx_A 5 DVPVCWICNEELG-------------NE--R--FRACGCTGELENVHRSCLSTWLTIS--RNTACQICGV 55 (60)
T ss_dssp SCCEETTTTEECS-------------CC--C--CCSCCCSSGGGSCCHHHHHHHHHHH--TCSBCTTTCC
T ss_pred CCCEeEEeecCCC-------------Cc--e--ecCcCCCCchhhhHHHHHHHHHHhC--CCCccCCCCC
Confidence 5678999986521 11 1 57865 4 99999999999643 2368999996
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.45 E-value=1.3e-05 Score=79.77 Aligned_cols=49 Identities=24% Similarity=0.536 Sum_probs=38.8
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchH-hHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHV-YHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHv-FHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~ 356 (452)
+...|.||...+.. +..|||||. |...|+..| ..||+|+.......++|
T Consensus 294 ~~~~C~IC~~~~~~-----------------~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVS-----------------VVFIPCGHLVVCQECAPSL--------RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCC-----------------EEEETTCCEEECTTTGGGC--------SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCc-----------------eEEcCCCChhHhHHHHhcC--------CcCCCCCCCccCeEEee
Confidence 45789999987642 346799999 999999988 25999999776666555
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.26 E-value=0.00011 Score=67.46 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=44.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhhH-HHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMSR-KAFK 361 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~~-~~lk 361 (452)
+...|+||...+.. || +++|||+|--.||+.|+... +..||+|+...... .|.+ .+|+
T Consensus 105 ~~f~CPI~~elm~D---------------PV--~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~-~L~pN~~Lk 163 (179)
T 2f42_A 105 DYLCGKISFELMRE---------------PC--ITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQD-QLIPNLAMK 163 (179)
T ss_dssp GGGBCTTTCSBCSS---------------EE--ECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG-GCEECHHHH
T ss_pred HhhcccCccccCCC---------------Ce--ECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChh-hCcchHHHH
Confidence 88999999999853 23 45999999999999999643 23699999844221 3332 3455
Q ss_pred HHHHH
Q 012995 362 AEAEL 366 (452)
Q Consensus 362 ~e~~l 366 (452)
.-++.
T Consensus 164 ~~Ie~ 168 (179)
T 2f42_A 164 EVIDA 168 (179)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.00018 Score=70.34 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=38.5
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCC--ccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPI--CVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPI--C~~ 347 (452)
....+|+||.+.|.. +|....|||+|-..||.+|+... ....||+ |+.
T Consensus 179 ~~el~CPIcl~~f~D----------------PVts~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~ 228 (267)
T 3htk_C 179 KIELTCPITCKPYEA----------------PLISRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQ 228 (267)
T ss_dssp BCCSBCTTTSSBCSS----------------EEEESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSC
T ss_pred ceeeECcCccCcccC----------------CeeeCCCCCcccHHHHHHHHHhC--CCCCCCcccccC
Confidence 467789999999864 34456999999999999998642 2357999 998
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.17 E-value=6.4e-05 Score=76.33 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=38.1
Q ss_pred ccccccccccccccccccccccccccCCccccc--eeccCchHhHHHHHHHHhccCC----CCC---CCCCCcccCc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVA--AVLVCGHVYHAECLEIMTVDTD----KYD---PACPICVVGE 349 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vV--AVLpCGHvFHaeCLeqwt~e~~----~~d---p~CPIC~~ge 349 (452)
.....|+||...+.. ++.++.. .-+.|||.||..||.+|+.... ..+ ..||.|+...
T Consensus 306 e~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pI 371 (381)
T 3k1l_B 306 NEELRCNICFAYRLD-----------GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371 (381)
T ss_dssp CSCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEE
T ss_pred cCCccCcccceeecC-----------CCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcC
Confidence 356679999877542 2344433 2358999999999999984321 111 4699999833
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.58 E-value=0.0005 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=33.7
Q ss_pred cccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..|+||.+.++. + .++ +|||+|=.+|+++|+.+. ..||+++.
T Consensus 4 ~~CpIs~~~m~d---------------P--V~~~~sG~~yer~~I~~~l~~~----~~cP~t~~ 46 (61)
T 2bay_A 4 MLCAISGKVPRR---------------P--VLSPKSRTIFEKSLLEQYVKDT----GNDPITNE 46 (61)
T ss_dssp CCCTTTCSCCSS---------------E--EEETTTTEEEEHHHHHHHHHHH----SBCTTTCC
T ss_pred EEecCCCCCCCC---------------C--EEeCCCCcEEcHHHHHHHHHhC----CCCcCCcC
Confidence 579999998753 2 244 899999999999999642 46999997
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.10 E-value=0.0021 Score=60.97 Aligned_cols=47 Identities=28% Similarity=0.622 Sum_probs=34.7
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.||.+.+... ... -.|+|.||..|++.|+... ..+.||.|..
T Consensus 179 ~i~~C~iC~~iv~~g-------------~~C---~~C~~~~H~~C~~~~~~~~--~~~~CP~C~~ 225 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-------------QSC---ETCGIRMHLPCVAKYFQSN--AEPRCPHCND 225 (238)
T ss_dssp TCCBCTTTCSBCSSC-------------EEC---SSSCCEECHHHHHHHTTTC--SSCBCTTTCC
T ss_pred CCCcCcchhhHHhCC-------------ccc---CccChHHHHHHHHHHHHhC--CCCCCCCCCC
Confidence 366799999987531 101 1399999999999998532 3468999997
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.74 E-value=0.0039 Score=53.39 Aligned_cols=47 Identities=21% Similarity=0.528 Sum_probs=37.2
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
..|.+|.-++.- ....+||.|||-.+|...|..+. +..||+|+..+.
T Consensus 2 hfC~~C~~Pi~i----------------ygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 2 HFCDKCGLPIKV----------------YGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQ 48 (101)
T ss_dssp CBCTTTCSBCSE----------------EEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCS
T ss_pred eecCccCCCeEE----------------EeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeee
Confidence 358999988753 35678999999999999997543 457999998553
No 73
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=88.18 E-value=0.064 Score=49.42 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=39.6
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhc---cC----CCCCCCCCCcccCcchhhhhh
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTV---DT----DKYDPACPICVVGEKQVSKMS 356 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~---e~----~~~dp~CPIC~~geK~~~kL~ 356 (452)
+..|+||.+.+..... +..-|.=-.|..-||..|..---. .. +.....||.|+.... .+.
T Consensus 2 G~~CpiC~k~Y~~~~~----------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~---~~~ 68 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDY----------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP---AEW 68 (183)
T ss_dssp CCBCTTTCCBCTTCCT----------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS---CHH
T ss_pred cCcCCCCcCccCCccc----------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC---HHH
Confidence 5679999998864200 112333347999999999843110 00 012478999998432 234
Q ss_pred HHHHHHHHH
Q 012995 357 RKAFKAEAE 365 (452)
Q Consensus 357 ~~~lk~e~~ 365 (452)
+.+|..|+.
T Consensus 69 ~~~~~~el~ 77 (183)
T 3lqh_A 69 RLALEKELQ 77 (183)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 74
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=80.24 E-value=0.42 Score=37.17 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=33.9
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...|.||.+.... + ..+.-=.|.-.||..||.--.......+..||.|..
T Consensus 17 ~~~~C~~C~~~~~~-------------~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDG-------------S-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSS-------------C-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCC-------------C-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 55679999876321 1 112222699999999998665443334578999985
No 75
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.40 E-value=1.1 Score=32.39 Aligned_cols=30 Identities=23% Similarity=0.550 Sum_probs=23.1
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|.-.||..||+-=+.+..+.+-.||.|..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 688999999997555444445677999975
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=77.52 E-value=0.69 Score=36.07 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=25.3
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|..+||..||+-.+.+....+-.||.|+.
T Consensus 29 ~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 29 HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCceecccCCCccCcCCCCCEECccccC
Confidence 689999999999887766666678999986
No 77
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=74.83 E-value=0.63 Score=41.59 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=24.1
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.|.-+||..||.--+......+-.||.|+..
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 4889999999987665554455779999974
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.47 E-value=0.25 Score=37.28 Aligned_cols=53 Identities=21% Similarity=0.469 Sum_probs=35.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCC-CCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTD-KYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~-~~dp~CPIC~~ 347 (452)
.+...|+||.+.+... ..-|+--.|..-||..|+.--....+ .....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~-------------~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAAD-------------EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSS-------------SCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCC-------------CCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3667899999886421 12344447999999999965433221 24578999986
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=73.68 E-value=2.6 Score=35.42 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=32.0
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHh-ccC-----------CCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMT-VDT-----------DKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt-~e~-----------~~~dp~CPIC~~ 347 (452)
.....|.||...=. +++ .-=..|+-|||..||+++- ... ....-.||-|..
T Consensus 13 ~~D~~C~VC~~~t~-------------~~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 13 VNDEMCDVCEVWTA-------------ESL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCSCCCTTTCCCCS-------------SCC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCcccCccccccc-------------cce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 46778999975321 121 1124699999999999981 100 112357999965
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.28 E-value=0.91 Score=37.55 Aligned_cols=49 Identities=27% Similarity=0.555 Sum_probs=31.0
Q ss_pred cccccccccccccccccccccccccCCccc-cceeccCchHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELS-VAAVLVCGHVYHAECLEIMTVDTDKYDPACPICV 346 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~-vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~ 346 (452)
....|.||.+.- |+. .+.=-.|+..||..||+..+.......-.||-|.
T Consensus 6 ~~~~C~~C~~~g---------------~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPG---------------DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCC---------------CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCC---------------CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 677899998752 211 1222379999999999987643333344566554
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=70.14 E-value=0.71 Score=42.14 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=24.3
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.|..+||..||..-+......+-.||.|...
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 4889999999987665555555789999983
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=69.50 E-value=2.1 Score=32.46 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=33.9
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.....|.+|.+. +++ +.=-.|--+||..||.--+.+..+.+-.||.|..
T Consensus 9 ~~~~~C~vC~~~---------------g~l--l~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG---------------GEI--ILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC---------------SSE--EECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC---------------CcE--EECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456779999863 111 1111688999999999765555555678999986
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=69.04 E-value=1.7 Score=34.24 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=34.3
Q ss_pred CcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC-CCCCCCCCCcccC
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT-DKYDPACPICVVG 348 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~-~~~dp~CPIC~~g 348 (452)
+......| ||.+.... +..-|+--.|.--||..|+.--.... ......||.|...
T Consensus 8 ~~~~~~~C-~C~~~~d~-------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 8 MALVPVYC-LCRQPYNV-------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp CCCCCCCS-TTSCSCCS-------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred ccCCccEE-EcCCccCC-------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 44466667 99987632 11224444699999999996432211 1234789999973
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=68.83 E-value=6.5 Score=35.07 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred cCchHhHHHHHHHHhcc-------CCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVD-------TDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e-------~~~~dp~CPIC~~ 347 (452)
.|--+||..||+.-+.. .+..+-.||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68899999999965531 1234578999985
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.55 E-value=0.73 Score=34.24 Aligned_cols=49 Identities=29% Similarity=0.489 Sum_probs=33.4
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.....|.+|.+. +++ +.=-.|.-+||..||..-+.+..+.+-.||.|..
T Consensus 7 ~~~~~C~vC~~~---------------g~l--l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---------------GQL--LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---------------SCC--EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---------------CeE--EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 366779999863 121 1122789999999999655544445577999964
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=61.48 E-value=4 Score=34.05 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=29.4
Q ss_pred ccccccccccccccccccccccccCCccccceeccCchHhHHHHHHH---HhccCCCCCCCCCCcc
Q 012995 284 LQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEI---MTVDTDKYDPACPICV 346 (452)
Q Consensus 284 ~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeq---wt~e~~~~dp~CPIC~ 346 (452)
..+|.+|.+.=... + ....-..+.=-.|+..||..||+. ........+-.||-|+
T Consensus 5 ~~~C~~C~~~~~~~------~--~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQN------R--EKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCC------T--TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhC------c--CCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 45799997652111 0 000112233346999999999963 2211222345677775
No 87
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=60.64 E-value=3.3 Score=32.98 Aligned_cols=35 Identities=23% Similarity=0.521 Sum_probs=24.9
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIM 331 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqw 331 (452)
+...|.||.+.+..+ ++..=|.|+|.|=..||+.+
T Consensus 2 ee~~C~~C~~~~~~~--------------av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQD--------------AVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCB--------------CCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCC--------------ceEECCcCChHHhHHHCHHH
Confidence 456899999753211 12223899999999999983
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=58.63 E-value=2 Score=35.58 Aligned_cols=48 Identities=23% Similarity=0.516 Sum_probs=33.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
....|.+|.+. +++ +-=-.|--+||..||.-=+.+....+-.||.|..
T Consensus 24 n~~~C~vC~~~---------------g~L--L~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 24 SATICRVCQKP---------------GDL--VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SSSCCSSSCSS---------------SCC--EECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCCcCcCcCCC---------------CCE--EECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 55679999864 111 1111588899999997766555556678999986
No 89
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=57.36 E-value=1.8 Score=32.90 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=33.2
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.....|.+|.+. +++ +.=-.|.-+||..||.--+.+....+-.||.|..
T Consensus 7 ~~~~~C~vC~~~---------------g~l--l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 7 HHMEFCRVCKDG---------------GEL--LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCSSCTTTCCC---------------SSC--BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCCCcCCCCCCC---------------CCE--EEcCCCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 356779999852 111 1111588999999999655554445677999986
No 90
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=56.78 E-value=11 Score=31.91 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=41.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccCcc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVGEK 350 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~geK 350 (452)
..++|-||.+.+--. .++|+ -||---|+--.---|++.-..+.+ ..||-|+...|
T Consensus 15 ~~qiCqiCGD~VG~~---------~~Ge~-FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLT---------VEGDL-FVACNECGFPACRPCYEYERREGT---QNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBC---------SSSSB-CCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCC
T ss_pred CCCccccccCccccC---------CCCCE-EEeeeccCChhhHHHHHHHHhccC---ccccccCCccc
Confidence 668999999987432 33443 567778997778899999988764 57999998554
No 91
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.11 E-value=3.5 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=21.1
Q ss_pred Cc-hHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 319 CG-HVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 319 CG-HvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
|. ..||..|+. +.+.......||.|....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 66 689999998 444434457899998743
No 92
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=55.04 E-value=1.2 Score=36.75 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=23.6
Q ss_pred ccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 317 LVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 317 LpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
-.|...||..||+.-+....+.+-.||.|..
T Consensus 73 d~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 73 DTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp SSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred CCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 3789999999998655544445678999976
No 93
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.43 E-value=1.8 Score=35.43 Aligned_cols=54 Identities=22% Similarity=0.377 Sum_probs=34.7
Q ss_pred CcccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 280 PSVDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
..++...|.||.+.-... + .+.-=.|...||..||.-=+.+..+.+-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~------------~--ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDD------------K--LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGG------------G--CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCC------------C--EEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 335777899998753210 1 11111689999999998544444445577999974
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=52.06 E-value=0.9 Score=34.34 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=33.7
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhcc--C-CCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVD--T-DKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e--~-~~~dp~CPIC~~g 348 (452)
.....|.||.+...+. +...+-=-.|.-.||..||.--+.. . ...+-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~------------~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEA------------PNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBT------------TBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCC------------CCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3667899999764321 1111222278999999999853321 0 2234679999863
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.72 E-value=3.4 Score=34.52 Aligned_cols=30 Identities=27% Similarity=0.446 Sum_probs=23.6
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|...||..||+--+.+..+.+-.||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 588999999998666555555678999974
No 96
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=50.60 E-value=2.1 Score=37.67 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=32.5
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhcc-CCCCCCCCCCcccC
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVD-TDKYDPACPICVVG 348 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e-~~~~dp~CPIC~~g 348 (452)
+...| +|.+..... ...+.-=.|.-.||..|+.--... .......||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~-------------~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDES-------------KFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTT-------------SCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCC-------------CCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 55678 999875321 112333379999999999533221 11234789999973
No 97
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=49.63 E-value=1.8 Score=32.46 Aligned_cols=49 Identities=29% Similarity=0.533 Sum_probs=33.2
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.....|.+|.+. +++ +.=-.|.-+||..||..-+......+-.||.|..
T Consensus 3 ~~~~~C~vC~~~---------------g~l--l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 3 IHEDFCSVCRKS---------------GQL--LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCSSCTTTCCC---------------SSC--EECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCcCCCCC---------------CcE--EEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 356789999863 111 1122699999999999655444445577999975
No 98
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.38 E-value=3 Score=33.31 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=22.3
Q ss_pred cCchHhHHHHHHHHhccCCCC-CCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKY-DPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~-dp~CPIC~~ 347 (452)
.|...||..||+--+.+..+. +-.||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999998554444443 567999974
No 99
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.75 E-value=0.71 Score=37.56 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=24.0
Q ss_pred cCchHhHHHHHHHHhcc----CCCCCCCCCCcccCcc
Q 012995 318 VCGHVYHAECLEIMTVD----TDKYDPACPICVVGEK 350 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e----~~~~dp~CPIC~~geK 350 (452)
.|..+||..||.--+.+ ....+-.|+.|....+
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 58999999999865542 3345578999987443
No 100
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=46.54 E-value=2.6 Score=32.70 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=33.0
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.....| ||.+.... ++ .-|+--.|.--||..|+.--..+.......||.|+.
T Consensus 14 ~~~~~C-~C~~~~~~------------g~-~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 14 NWKVDC-KCGTKDDD------------GE-RMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp SSEECC-TTCCCSCC------------SS-CEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred CcceEe-eCCCccCC------------CC-cEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 356679 79886421 11 123334699999999997653222234578999975
No 101
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=46.07 E-value=3.5 Score=33.09 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=22.2
Q ss_pred cCchHhHHHHHHHHhccCCCCC-CCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYD-PACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~d-p~CPIC~~ 347 (452)
.|..+||..||.--+.+....+ -.||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 5889999999996655544444 67999974
No 102
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=45.91 E-value=4.2 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.545 Sum_probs=23.0
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|--+||..||.-=+......+-.||.|..
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 588999999997655444445577999987
No 103
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=43.98 E-value=2 Score=32.89 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=33.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.....|.||.+. +++ +.=-.|.-+||..||.--+......+-.||.|..+
T Consensus 6 ~~~~~C~vC~~~---------------g~l--l~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---------------GEL--ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---------------SSC--EECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---------------CCE--EEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356789999853 121 11116889999999986554444455779999863
No 104
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=43.17 E-value=5.9 Score=32.60 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=20.9
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|.-.||..|+.--..... ....||.|+.
T Consensus 47 ~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHIP-DTYLCERCQP 75 (98)
T ss_dssp TTCBEEETTTTTCCTTSCC-SSBCCTTTSS
T ss_pred CCCCcCcCcCCCCCccCCC-CCEECCCCcC
Confidence 6999999999975332222 2468999985
No 105
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=39.39 E-value=5 Score=38.36 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=20.4
Q ss_pred cCchHhHHHHHHHHhccCCCC-CCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKY-DPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~-dp~CPIC~~ 347 (452)
-|...||..||+-=+...... +-.||.|..
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 688999999999655444444 567999974
No 106
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=38.55 E-value=1.9 Score=31.69 Aligned_cols=48 Identities=17% Similarity=0.391 Sum_probs=29.4
Q ss_pred ccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhccCCCCCCCCCCcc
Q 012995 286 ACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTVDTDKYDPACPICV 346 (452)
Q Consensus 286 ~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~e~~~~dp~CPIC~ 346 (452)
.|.||.+++.. +..-|+-- .|.-=||..|+.--..........||.|+
T Consensus 4 ~cc~C~~p~~~-------------~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-------------KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-------------TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-------------CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48899888642 11234444 68889999998644321111346899985
No 107
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=38.19 E-value=28 Score=26.07 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=12.3
Q ss_pred cccccccccccccccccc
Q 012995 282 VDLQACGACSKLLTERSS 299 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~ 299 (452)
|....|.+|.-.+.....
T Consensus 1 m~~y~C~~CGyvYd~~~G 18 (52)
T 1e8j_A 1 MDIYVCTVCGYEYDPAKG 18 (52)
T ss_dssp CCCEECSSSCCCCCTTTC
T ss_pred CCcEEeCCCCeEEcCCcC
Confidence 345779999877765433
No 108
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=37.36 E-value=24 Score=28.92 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=15.3
Q ss_pred cccccccccccccccccccc
Q 012995 282 VDLQACGACSKLLTERSSWC 301 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~ws 301 (452)
+....|.+|.-.|.......
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp 44 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWP 44 (81)
T ss_dssp CCEEEETTTCCEEETTTCBT
T ss_pred cceEEeCCCCEEEcCCcCCc
Confidence 67899999998887654443
No 109
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=36.35 E-value=13 Score=29.21 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=32.0
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.+...|.||.+.-... .+++ +.==.|.-.||..||.--. ....+-.||.|..
T Consensus 14 ~~~~~C~vC~~~~s~~----------~~~l--l~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQN----------SNVI--LFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCS----------SSCE--EECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCC----------CCCE--EECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 4677899998753111 0111 1111688999999997431 2234567999975
No 110
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=36.31 E-value=6.4 Score=30.91 Aligned_cols=29 Identities=21% Similarity=0.531 Sum_probs=21.4
Q ss_pred Cc-hHhHHHHHHHHhccCCCCCCCCCCcccCc
Q 012995 319 CG-HVYHAECLEIMTVDTDKYDPACPICVVGE 349 (452)
Q Consensus 319 CG-HvFHaeCLeqwt~e~~~~dp~CPIC~~ge 349 (452)
|. ..||..|+. +.+.......||.|....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 66 689999998 444444557899998743
No 111
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=35.59 E-value=28 Score=26.35 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=12.5
Q ss_pred cccccccccccccccccc
Q 012995 283 DLQACGACSKLLTERSSW 300 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~w 300 (452)
....|.+|.-.+......
T Consensus 2 ~~y~C~~CGyvYd~~~Gd 19 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGL 19 (55)
T ss_dssp CEEEETTTCCEEETTTCB
T ss_pred CcEEeCCCCeEECCCcCC
Confidence 456799998887765433
No 112
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=35.40 E-value=25 Score=26.75 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=11.9
Q ss_pred cccccccccccccccc
Q 012995 282 VDLQACGACSKLLTER 297 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ek 297 (452)
|....|.+|.-.|...
T Consensus 1 m~~y~C~vCGyvYd~~ 16 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDPE 16 (54)
T ss_dssp CCCEEETTTCCEECTT
T ss_pred CCceECCCCCeEECCC
Confidence 3567899999887654
No 113
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=35.05 E-value=9.7 Score=26.70 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.5
Q ss_pred ccccccccccccccc
Q 012995 282 VDLQACGACSKLLTE 296 (452)
Q Consensus 282 ~d~~~C~IC~k~L~e 296 (452)
.++.+|+||.+.|..
T Consensus 3 ~EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 3 SEGFICPQCMKSLGS 17 (34)
T ss_dssp SEEEECTTTCCEESS
T ss_pred CcccCCcHHHHHcCC
Confidence 468999999999863
No 114
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=34.42 E-value=8.6 Score=32.88 Aligned_cols=28 Identities=29% Similarity=0.800 Sum_probs=23.2
Q ss_pred eccCc-hHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 316 VLVCG-HVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 316 VLpCG-HvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
++.|. |.+-..||..++... ..||||.+
T Consensus 41 LV~C~dHYLCl~CLtlmL~~S----drCpIC~~ 69 (99)
T 2ko5_A 41 LVECNNHYLCLNCLTLLLSVS----NRCPICKM 69 (99)
T ss_dssp EEECSSCEEEHHHHHHTCSSS----SEETTTTE
T ss_pred eeeecchhhHHHHHHHHHhhc----cCCcccCC
Confidence 34565 999999999999755 47999998
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=33.85 E-value=14 Score=30.04 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=31.9
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHH-hccCCCCCCCCCCccc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIM-TVDTDKYDPACPICVV 347 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqw-t~e~~~~dp~CPIC~~ 347 (452)
.+...|.||.+.-... .. + .+.=-.|.-.||..||.-- +++ -+-.||.|..
T Consensus 23 ~~~~~C~vC~~~~s~~----~~------~--ll~CD~C~~~fH~~Cl~p~~vP~---g~W~C~~C~~ 74 (88)
T 2l43_A 23 DEDAVCSICMDGESQN----SN------V--ILFCDMCNLAVHQECYGVPYIPE---GQWLCRHCLQ 74 (88)
T ss_dssp CCCCCCSSCCSSSSCS----EE------E--EEECSSSCCCCCHHHHTCSSCCS---SCCCCHHHHH
T ss_pred CCCCcCCcCCCCCCCC----CC------C--EEECCCCCchhhcccCCCCccCC---CceECccccC
Confidence 3667899998753110 00 1 1111168889999999743 333 3567999986
No 116
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=30.84 E-value=33 Score=27.14 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=13.9
Q ss_pred ccccccccccccccccccc
Q 012995 281 SVDLQACGACSKLLTERSS 299 (452)
Q Consensus 281 s~d~~~C~IC~k~L~ekS~ 299 (452)
.|....|.+|.-.+.....
T Consensus 4 ~m~~y~C~vCGyiYd~~~G 22 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEKG 22 (70)
T ss_dssp CSSCEEETTTCCEECTTTC
T ss_pred CCceEEeCCCCEEEcCCCC
Confidence 3677889999988776533
No 117
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=29.39 E-value=5.8 Score=30.83 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=30.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccC-----CCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDT-----DKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~-----~~~dp~CPIC~~ 347 (452)
+...| ||.+.... + ..|+--.|.--||..|+.--.... ......||.|+.
T Consensus 15 ~~~~C-~C~~~~~~-------------~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 15 NALYC-ICRQPHNN-------------R-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TCCCS-TTCCCCCS-------------S-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCEE-ECCCccCC-------------C-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 45667 89887531 1 123334699999999995322110 113478999985
No 118
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.92 E-value=38 Score=28.10 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=15.3
Q ss_pred Ccccccccccccccccccccc
Q 012995 280 PSVDLQACGACSKLLTERSSW 300 (452)
Q Consensus 280 ps~d~~~C~IC~k~L~ekS~w 300 (452)
..|....|.+|.-.|......
T Consensus 31 ~~m~~y~C~vCGyvYD~~~Gd 51 (87)
T 1s24_A 31 KAYLKWICITCGHIYDEALGD 51 (87)
T ss_dssp -CCCEEEETTTTEEEETTSCC
T ss_pred cCCceEECCCCCeEecCCcCC
Confidence 346889999999888765433
No 119
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=28.29 E-value=7.1 Score=30.44 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=22.4
Q ss_pred cCchHhHHHHHHHHhccCCCC-CCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKY-DPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~-dp~CPIC~~ 347 (452)
.|..+||..||+-=+.+..+. +-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 588999999998554444444 678999975
No 120
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=26.98 E-value=22 Score=29.88 Aligned_cols=30 Identities=20% Similarity=0.618 Sum_probs=20.4
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECL 328 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCL 328 (452)
....|.-|.+.+..+ . .+..-|..||.+|+
T Consensus 60 ~~~~C~~C~~~I~~~--------------~--~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 60 SWKRCAGCGGKIADR--------------F--LLYAMDSYWHSRCL 89 (123)
T ss_dssp SCSBBSSSSSBCCSS--------------S--EEEETTEEEETTTS
T ss_pred cCCcCcCCCCCcCCc--------------E--EEEeCCcEEccccc
Confidence 456899999987421 1 13346889998884
No 121
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=26.96 E-value=22 Score=27.44 Aligned_cols=52 Identities=15% Similarity=0.409 Sum_probs=30.9
Q ss_pred ccccccccccccccccccccccccccCCccccceec-cCchHhHHHHHHHHhc------cCCCCCCCCCCcc
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVL-VCGHVYHAECLEIMTV------DTDKYDPACPICV 346 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVL-pCGHvFHaeCLeqwt~------e~~~~dp~CPIC~ 346 (452)
.....|++|.+++... ...|.-- .|.--||..|..---. +.......||.|.
T Consensus 6 ~~~~~C~~C~~p~~~~-------------~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDD-------------QDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp ---CBCTTTCSBCCTT-------------SCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCcCcCccCCCccCCC-------------CCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 3567899999997532 2233344 7999999999843211 0111246799885
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=26.20 E-value=14 Score=31.41 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=19.5
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|--+||..||. +.+..+.+-.||-|.-
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C 61 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQC 61 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCC
Confidence 477899999998 5444444556886654
No 123
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=25.49 E-value=6.1 Score=29.91 Aligned_cols=27 Identities=22% Similarity=0.577 Sum_probs=20.1
Q ss_pred Cc-hHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 319 CG-HVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 319 CG-HvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
|. ..||..|+. +.+.......||.|..
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 66 689999998 4444445678999974
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=24.36 E-value=45 Score=26.75 Aligned_cols=30 Identities=17% Similarity=0.444 Sum_probs=19.5
Q ss_pred cCchHhHHHHHH------HHhcc-CCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLE------IMTVD-TDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLe------qwt~e-~~~~dp~CPIC~~ 347 (452)
.|+.-||..|+. ..+.+ .+...+.||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 588899999952 12222 1234578999974
No 125
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=24.17 E-value=6.1 Score=32.70 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=18.5
Q ss_pred Cc-hHhHHHHHHHHhccCCCCCCCCCC-cc
Q 012995 319 CG-HVYHAECLEIMTVDTDKYDPACPI-CV 346 (452)
Q Consensus 319 CG-HvFHaeCLeqwt~e~~~~dp~CPI-C~ 346 (452)
|. --||..|+. +.........||. |.
T Consensus 47 C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 47 CPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp CSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CccccCcCccCC--CCcCCCCCccCChhhc
Confidence 44 689999997 3333334578999 97
No 126
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.10 E-value=18 Score=33.30 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=7.7
Q ss_pred CCCCcccCcc
Q 012995 341 ACPICVVGEK 350 (452)
Q Consensus 341 ~CPIC~~geK 350 (452)
.||+|..+-.
T Consensus 188 ~CP~C~~~k~ 197 (202)
T 1yuz_A 188 KCPICFRPKD 197 (202)
T ss_dssp BCTTTCCBGG
T ss_pred CCCCCCCChH
Confidence 6999998543
No 127
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.79 E-value=7.3 Score=32.61 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=23.2
Q ss_pred cCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
.|...||..||.-=+.+....+-.||.|..
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccc
Confidence 688999999999655554455677999974
No 128
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=23.49 E-value=7.7 Score=29.70 Aligned_cols=28 Identities=25% Similarity=0.492 Sum_probs=20.3
Q ss_pred Cc-hHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 319 CG-HVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 319 CG-HvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
|. ..||..|+. +.+.......||.|...
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 65 899999998 33333445789999763
No 129
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=23.29 E-value=47 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=21.0
Q ss_pred cCchHhHHHHHHHHh-----ccC--CCCCCCCCCccc
Q 012995 318 VCGHVYHAECLEIMT-----VDT--DKYDPACPICVV 347 (452)
Q Consensus 318 pCGHvFHaeCLeqwt-----~e~--~~~dp~CPIC~~ 347 (452)
.|-.+||.+||..-+ .+. +..+-.|++|..
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 577999999999652 121 233467999975
No 130
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=23.11 E-value=8.4 Score=29.95 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=32.0
Q ss_pred cccccccccccccccccccccccccCCccccceeccCchHhHHHHHHHHhccCCCCCCCCCCccc
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECLEIMTVDTDKYDPACPICVV 347 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~ 347 (452)
+...| ||.+.... + .-|+=-.|.--||..|+.--.... .....||.|..
T Consensus 18 ~~~~C-iC~~~~~~-------------~-~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAG-------------R-PMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTT-------------C-CEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHT
T ss_pred CceEe-ECCCcCCC-------------C-CEEECCCCCccccccccCcCcccC-CCcEECCCCCC
Confidence 66778 99886421 1 123344699999999997543222 23478999975
No 131
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.69 E-value=14 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.679 Sum_probs=17.8
Q ss_pred cccccccccccccccccccccccCCccccceeccCchHhHHHHH
Q 012995 285 QACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECL 328 (452)
Q Consensus 285 ~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCL 328 (452)
..|+.|.+..-. .++ +..=|.+||..|+
T Consensus 4 ~~C~~C~k~Vy~-----~Ek-----------~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYP-----TEK-----------VNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCG-----GGC-----------CCSSSSCCCGGGC
T ss_pred CcCCccCCEEec-----cee-----------EEECCeEecccCC
Confidence 479999988631 122 2234778898874
No 132
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.57 E-value=20 Score=27.17 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=20.6
Q ss_pred ccccccccccccccccccccccccccCCccccceeccCchHhHHHHH
Q 012995 282 VDLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCGHVYHAECL 328 (452)
Q Consensus 282 ~d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCGHvFHaeCL 328 (452)
.....|..|.+.+.. + . +..-|.+||.+|+
T Consensus 13 ~~~~~C~~C~~~I~~-------------~--~--~~a~~~~~H~~CF 42 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-------------V--F--VKLRDRHRHPECY 42 (79)
T ss_dssp CCCCCCSSSCCCCCS-------------S--C--EECSSCEECTTTT
T ss_pred CCCCccccCCCCccC-------------c--E--EEECcceeCcCcC
Confidence 356789999998642 1 1 3345789998885
No 133
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=22.32 E-value=21 Score=32.16 Aligned_cols=10 Identities=30% Similarity=0.969 Sum_probs=7.6
Q ss_pred CCCCcccCcc
Q 012995 341 ACPICVVGEK 350 (452)
Q Consensus 341 ~CPIC~~geK 350 (452)
.||+|..+-.
T Consensus 155 ~CP~Cg~~~~ 164 (170)
T 3pwf_A 155 YCPVCGAPKE 164 (170)
T ss_dssp BCTTTCCBGG
T ss_pred CCCCCCCCHH
Confidence 6999997443
No 134
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=21.91 E-value=73 Score=36.25 Aligned_cols=62 Identities=8% Similarity=0.069 Sum_probs=42.2
Q ss_pred cccccccccccccccccccccccccCCccccceeccCc-hHhHHHHHHHHhccCCCCCCCCCCcccCcchhhhhh-HHHH
Q 012995 283 DLQACGACSKLLTERSSWCSQRIGANNELSVAAVLVCG-HVYHAECLEIMTVDTDKYDPACPICVVGEKQVSKMS-RKAF 360 (452)
Q Consensus 283 d~~~C~IC~k~L~ekS~wss~~i~~~~Dl~vVAVLpCG-HvFHaeCLeqwt~e~~~~dp~CPIC~~geK~~~kL~-~~~l 360 (452)
+...|+|-.+.+.. ..+|+.| ++|=-.++++|+.. +++||+=+..-... .|. -.+|
T Consensus 890 ~~F~cPIs~~lM~D-----------------PVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~-~liPN~~L 947 (968)
T 3m62_A 890 DEFLDPLMYTIMKD-----------------PVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE-DVTPNEEL 947 (968)
T ss_dssp GGGBCTTTCSBCSS-----------------EEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG-GCEECHHH
T ss_pred HHhCCcchhhHHhC-----------------CeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc-cccccHHH
Confidence 88899998887643 2357888 68999999999963 47899877633221 232 2456
Q ss_pred HHHHHH
Q 012995 361 KAEAEL 366 (452)
Q Consensus 361 k~e~~l 366 (452)
|+-.+-
T Consensus 948 k~~I~~ 953 (968)
T 3m62_A 948 RQKILC 953 (968)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655444
No 135
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.27 E-value=35 Score=29.30 Aligned_cols=25 Identities=24% Similarity=0.622 Sum_probs=15.6
Q ss_pred eeccCchHhHHHHHHHHhccCCCCCCCCCCcccC
Q 012995 315 AVLVCGHVYHAECLEIMTVDTDKYDPACPICVVG 348 (452)
Q Consensus 315 AVLpCGHvFHaeCLeqwt~e~~~~dp~CPIC~~g 348 (452)
.=..||++| .+ .. ..-..||.|+..
T Consensus 69 ~C~~CG~~F----~~----~~-~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVF----KA----EI-NIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBC----CC----CS-SCCSSCSSSCCC
T ss_pred ChhhCcCee----cc----cC-CCCCCCcCCCCC
Confidence 345799999 11 11 122579999983
Done!