BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012996
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
++ LP + + H Y+A G + G I + E+ + R+ H +AV + F+ D
Sbjct: 955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1014
Query: 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSAT 191
G LIS SED +++W+ Q +++L H T R+ +
Sbjct: 1015 GKTLISSSEDSVIQVWNW---------QTGDYVFLQAHQETVKDFRLLQ--------DSR 1057
Query: 192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250
++S S D T KVW+++ GR+ R+ + + A+ F + S D + I + +
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
SP + L H+ V C A+S G LL +G ++G +R+W+
Sbjct: 1118 SP---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP-------IAANSHGTYIAGGGQSG 102
++L+ + +G LY W + +K+L ++P + G IA G
Sbjct: 580 AKLQAKQEGDTGR-LYLEWINKKT-IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADK 637
Query: 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162
+ +++ +G L AH V C FS D S++ + S D V+IW
Sbjct: 638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-----------S 686
Query: 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSV 220
A+ +H++ H+ ++ + + S D K+W L + RN +F +
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNS 745
Query: 221 IDAIALDPAEHVFYAGSRDGSIYI----AALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
++ P + + + S DG++ + +A +S + + + D V C +
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805
Query: 277 YST-GDLLISGSEDGMV 292
+S GD +I +++ ++
Sbjct: 806 WSADGDKIIVAAKNKVL 822
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163
+ +W + S + H V ++FS DGS ++ S+D +R+W V C++
Sbjct: 864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV---CKN--- 917
Query: 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-ID 222
S + L +I + + +++ R + L+ G+ + P +
Sbjct: 918 SAIVLKQ---------EIDVVFQENETMVLAVDNIRGLQ---LIAGKTGQIDYLPEAQVS 965
Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281
L P G DG+I I L +S G H KAV + ++ G
Sbjct: 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG---------HKKAVRHIQFTADGK 1016
Query: 282 LLISGSEDGMVRVWDPITHNIVRM 305
LIS SED +++VW+ T + V +
Sbjct: 1017 TLISSSEDSVIQVWNWQTGDYVFL 1040
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
H AV FS+DG + S D L VF+ ++ L H +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGAD------KTLQVFKAETGEK-----LLDIKAHEDEV-- 660
Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYA-GS 237
+ + + I + S D+ K+W G+L+ S V + + H+ A GS
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWD 296
D + + LN + + +G H+ +V +S D LL S S DG +R+WD
Sbjct: 721 NDFFLKLWDLNQKECRNTMFG---------HTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 297 PITH------NIVRMFRLAKGPVNNILVVRR 321
+ N+ R F ++ P ++ V+ +
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVK 802
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
A +S T + +W L + H V C FS DG L +G ++G +
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 147 RIWSL 151
RIW++
Sbjct: 1152 RIWNV 1156
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 92 GTYIAGGGQSGDIYMWEVASGRLL---------KKWHAHYRAVTCLVFSEDGSFLISGSE 142
G +A G +G+I +W V+ G+LL + H VT + FS D L+S
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197
Query: 143 DGCVRIWSLLT 153
G ++ W++ T
Sbjct: 1198 -GYLKWWNVAT 1207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
++ LP + + H Y+A G + G I + E+ + R+ H +AV + F+ D
Sbjct: 962 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTAD 1021
Query: 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSAT 191
G LIS SED +++W+ Q +++L H T R+ +
Sbjct: 1022 GKTLISSSEDSVIQVWNW---------QTGDYVFLQAHQETVKDFRLLQ--------DSR 1064
Query: 192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250
++S S D T KVW+++ GR+ R+ + + A+ F + S D + I + +
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
SP + L H+ V C A+S G LL +G ++G +R+W+
Sbjct: 1125 SP---------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1162
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/257 (19%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP-------IAANSHGTYIAGGGQSG 102
++L+ + +G LY W + +K+L ++P + G IA G
Sbjct: 587 AKLQAKQEGDTGR-LYLEWINKKT-IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADK 644
Query: 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162
+ +++ +G L AH V C FS D S++ + S D V+IW
Sbjct: 645 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-----------S 693
Query: 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSV 220
A+ +H++ H+ ++ + + S D K+W L + RN +F +
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNS 752
Query: 221 IDAIALDPAEHVFYAGSRDGSIYI----AALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
++ P + + + S DG++ + +A +S + + + D V C +
Sbjct: 753 VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 812
Query: 277 YST-GDLLISGSEDGMV 292
+S GD +I +++ ++
Sbjct: 813 WSADGDKIIVAAKNKVL 829
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 29/204 (14%)
Query: 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163
+ +W + S + H V ++FS DGS ++ S+D +R+W V C++
Sbjct: 871 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV---CKN--- 924
Query: 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-ID 222
S + L +I + + +++ R + L+ G+ + P +
Sbjct: 925 SAIVLKQ---------EIDVVFQENETMVLAVDNIRGLQ---LIAGKTGQIDYLPEAQVS 972
Query: 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281
L P G DG+I I L +S G H KAV + ++ G
Sbjct: 973 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG---------HKKAVRHIQFTADGK 1023
Query: 282 LLISGSEDGMVRVWDPITHNIVRM 305
LIS SED +++VW+ T + V +
Sbjct: 1024 TLISSSEDSVIQVWNWQTGDYVFL 1047
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 84/211 (39%), Gaps = 32/211 (15%)
Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
H AV FS+DG + S D L VF+ ++ L H +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGAD------KTLQVFKAETGEK-----LLDIKAHEDEV-- 667
Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYA-GS 237
+ + + I + S D+ K+W G+L+ S V + + H+ A GS
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWD 296
D + + LN + + +G H+ +V +S D LL S S DG +R+WD
Sbjct: 728 NDFFLKLWDLNQKECRNTMFG---------HTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 297 PITH------NIVRMFRLAKGPVNNILVVRR 321
+ N+ R F ++ P ++ V+ +
Sbjct: 779 VRSANERKSINVKRFFLSSEDPPEDVEVIVK 809
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146
A +S T + +W L + H V C FS DG L +G ++G +
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 147 RIWSL 151
RIW++
Sbjct: 1159 RIWNV 1163
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 92 GTYIAGGGQSGDIYMWEVASGRLL---------KKWHAHYRAVTCLVFSEDGSFLISGSE 142
G +A G +G+I +W V+ G+LL + H VT + FS D L+S
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1204
Query: 143 DGCVRIWSLLT 153
G ++ W++ T
Sbjct: 1205 -GYLKWWNVAT 1214
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150
H + G + + +W++ +G+ L H AV C+ + DG ++SG+ D V++W
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210
T E C LH+ GHT R+ + + G+ +VS S D + +VW + G
Sbjct: 266 PET--ETC---------LHTLQGHTNRVYS--LQFDGIH--VVSGSLDTSIRVWDVETGN 310
Query: 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270
+ + + + ++ +++ +G+ D ++ I + + + + + H
Sbjct: 311 CIHTLTGHQSLTS-GMELKDNILVSGNADSTVKIWDIK------TGQCLQTLQGPNKHQS 363
Query: 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR 304
AVTCL ++ + +I+ S+DG V++WD T +R
Sbjct: 364 AVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIR 396
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 44/207 (21%)
Query: 108 EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
E+ S ++LK H +TCL F G+ ++SGS+D +++WS +T +C
Sbjct: 107 ELKSPKVLKGHDDH--VITCLQFC--GNRIVSGSDDNTLKVWSAVT--GKC--------- 151
Query: 168 LHSFTGHTLRITDIVIGYGGVSAT------IVSASEDRTCKVWSLLKGRLLRNIV-FPSV 220
L + GHT GGV ++ I+S S DRT KVW+ G + + S
Sbjct: 152 LRTLVGHT----------GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTST 201
Query: 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG 280
+ + L E +GSRD ++ + + + +H+ L H AV C+ Y G
Sbjct: 202 VRCMHLH--EKRVVSGSRDATLRVWDIE------TGQCLHV---LMGHVAAVRCVQYD-G 249
Query: 281 DLLISGSEDGMVRVWDPITHNIVRMFR 307
++SG+ D MV+VWDP T + +
Sbjct: 250 RRVVSGAYDFMVKVWDPETETCLHTLQ 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 26/159 (16%)
Query: 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
G ++ G I +W+V +G + H + + ++ L+SG+ D V+IW +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDI 346
Query: 152 LTVFEECESQRASHLYLHSFTG---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208
T +C L + G H +T + V +++S+D T K+W L
Sbjct: 347 KT--GQC---------LQTLQGPNKHQSAVTCLQFNKNFV----ITSSDDGTVKLWDLKT 391
Query: 209 GRLLRNIVF------PSVIDAIALDPAEHVFYAGSRDGS 241
G +RN+V V+ I + V GSR+G+
Sbjct: 392 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 28/219 (12%)
Query: 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
+ ++ +A + G IA + +W +G+LL+ H +V + FS DG + S
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 74
Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
S+D V++W+ R L L + TGH+ + + G TI SAS+D+
Sbjct: 75 ASDDKTVKLWN-----------RNGQL-LQTLTGHSSSVRGVAFSPDG--QTIASASDDK 120
Query: 200 TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258
T K+W+ G+LL+ + S + +A P + S D ++ + N +
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------- 171
Query: 259 MHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
++ +L+ HS +V +A+S G + S S+D V++W+
Sbjct: 172 --LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 28/219 (12%)
Query: 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
+ + +A G IA + +W +G+LL+ H +V + FS DG + S
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIAS 320
Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
S+D V++W+ + +L + TGH+ + + G TI SAS+D+
Sbjct: 321 ASDDKTVKLWN------------RNGQHLQTLTGHSSSVWGVAFSPDG--QTIASASDDK 366
Query: 200 TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258
T K+W+ G+LL+ + S + +A P + S D ++ + N +
Sbjct: 367 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ-------- 417
Query: 259 MHIIGSLSDHSKAVTCLAYSTGDLLI-SGSEDGMVRVWD 296
++ +L+ HS +V +A+S D I S S+D V++W+
Sbjct: 418 --LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
+A + G IA + +W +G+LL+ H +V + FS DG + S S+D
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 121
Query: 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205
V++W+ R L L + TGH+ + + G TI SAS+D+T K+W+
Sbjct: 122 VKLWN-----------RNGQL-LQTLTGHSSSVWGVAFSPDG--QTIASASDDKTVKLWN 167
Query: 206 LLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264
G+LL+ + S + +A P + S D ++ + N + ++ +
Sbjct: 168 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQT 216
Query: 265 LSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
L+ HS +V +A+S G + S S+D V++W+
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 249
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
+A + G IA + +W +G+LL+ H +V + FS DG + S S+D
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408
Query: 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205
V++W+ R L L + TGH+ + + + TI SAS+D+T K+W+
Sbjct: 409 VKLWN-----------RNGQL-LQTLTGHSSSVWGVA--FSPDDQTIASASDDKTVKLWN 454
Query: 206 LLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264
G+LL+ + S + +A P + S D ++ + N + ++ +
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----------LLQT 503
Query: 265 LSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
L+ HS +V +A+S G + S S+D V++W+
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
AH +V + FS DG + S S+D V++W+ R L L + TGH+ +
Sbjct: 14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------RNGQL-LQTLTGHSSSVW 61
Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238
+ G TI SAS+D+T K+W+ G+LL+ + S + +A P + S
Sbjct: 62 GVAFSPDG--QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWD 296
D ++ + N + ++ +L+ HS +V +A+S G + S S+D V++W+
Sbjct: 119 DKTVKLWNRNGQ----------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 15/126 (11%)
Query: 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
+ ++ +A + G IA + +W +G+LL+ H +V + FS DG + S
Sbjct: 467 SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525
Query: 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199
S+D V++W+ R L L + TGH+ + + G TI SAS D+
Sbjct: 526 ASDDKTVKLWN-----------RNGQL-LQTLTGHSSSVWGVAFSPDG--QTIASASSDK 571
Query: 200 TCKVWS 205
T K+W+
Sbjct: 572 TVKLWN 577
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T + L + H+ ++ + G + IVS+S D C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED MV +W+ T IV+ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 71
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 72 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 104
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 105 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNR 162
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 75 VKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFS 131
+K+LPA +P+ + N G+ I G +W+ ASG+ LK V+ + FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
+G ++++ + D +++W + L ++TGH I +
Sbjct: 205 PNGKYILAATLDNTLKLW-----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 192 -IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
IVS SED +W+L +++ + V+ + A P E++
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T + L + H+ ++ + G + IVS+S D C+
Sbjct: 131 DESVRIWDVKT-----------GMCLKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA Y
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED MV +W+ T IV+ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 71
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 72 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 104
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 105 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNR 162
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI D+ +W+ + G+ LK + H C+ FS G +++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 257 SGSEDNMVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 301
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 302 LENDKTIKLW 311
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 75 VKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFS 131
+K+LPA +P+ + N G+ I G +W+ ASG+ LK V+ + FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
+G ++++ + D +++W + L ++TGH I +
Sbjct: 205 PNGKYILAATLDNDLKLW-----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 192 -IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
IVS SED +W+L +++ + V+ + A P E++
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 297
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 150 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 196
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 197 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 66/202 (32%)
Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRIT 179
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGIS 91
Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD 239
D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 92 DV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK-------------------------- 123
Query: 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPI 298
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 124 ------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 299 THNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNR 181
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 198 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 257
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 258 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 316
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 276 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 320
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 321 LENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 152 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 198
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 199 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 92
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 93 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 125
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 126 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNR 183
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 200 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 259
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 260 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 318
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG--GVSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 278 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 322
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 323 LENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 74
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 75 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 107
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 108 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNR 165
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 260 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 304
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 305 LENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 145 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 191
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 192 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 85
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 86 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 118
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 119 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNR 176
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 34/178 (19%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 193 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 252
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 253 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 271 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 315
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 316 LENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 68
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 69 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 101
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 102 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNR 159
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 254 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 298
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 299 LENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 124 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 170
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 171 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 64
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 65 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 97
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 98 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNR 155
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 172 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 231
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 232 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 250 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 294
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 295 LENDKTIKLW 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 74
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 75 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 107
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 108 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNR 165
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 260 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 304
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 305 LENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 129 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 175
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 176 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 69
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 70 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 102
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 103 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNR 160
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 177 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 236
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 237 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 295
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 255 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 299
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 300 LENDKTIKLW 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 128 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 174
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 175 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 68
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 69 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 101
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 102 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNR 159
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 176 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 294
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 254 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 298
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 299 LENDKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 134 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 180
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 181 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 74
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 75 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 107
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 108 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNR 165
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 182 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 241
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 242 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 300
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 260 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 304
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 305 LENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 133 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 179
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 180 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 73
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 74 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 106
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 107 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNR 164
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 181 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 240
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 241 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 299
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 259 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 303
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 304 LENDKTIKLW 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 127 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 173
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 174 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 67
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 68 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 100
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 101 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNR 158
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148
N I G + +W+V +G+ LK AH V+ + F+ DGS ++S S DG RI
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 149 WS------LLTVFEE-------CESQRASHLYLHSFTGHTLRITDIVIG----------- 184
W L T+ ++ + L + +TL++ D G
Sbjct: 175 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 234
Query: 185 -----YGGVSAT----IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVF 233
+ S T IVS SED +W+L +++ + V+ + A P E++
Sbjct: 235 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 293
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 253 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 297
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 298 LENDKTIKLW 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L + S D ++IW FE+ + +GH L I
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK------------TISGHKLGI 71
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 72 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 104
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 105 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNR 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 75 VKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFS 131
+K+LPA +P+ + N G+ I G +W+ ASG+ LK V+ + FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
+G ++++ + D +++W + L ++TGH I +
Sbjct: 205 PNGKYILAATLDNTLKLW-----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 192 -IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232
IVS SED +W+L +++ + V+ + A P E++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FS-EDGSFLI 138
P+ + + +G YI + +W+ + G+ LK + H C+ FS G +++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSAS 196
SGSED V IW+L T + GH TD+VI I SA+
Sbjct: 257 SGSEDNLVYIWNLQT-----------KEIVQKLQGH----TDVVISTACHPTENIIASAA 301
Query: 197 --EDRTCKVW 204
D+T K+W
Sbjct: 302 LENDKTIKLW 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 71
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 72 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 104
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 105 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNR 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 75 VKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFS 131
+K+LPA +P+ + N G+ I G +W+ ASG+ LK V+ + FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
+G ++++ + D +++W + L ++TGH I +
Sbjct: 205 PNGKYILAATLDNTLKLW-----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 192 -IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249
IVS SED +W+L +++ + V+ + A P E++ + + + I +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Query: 250 E 250
+
Sbjct: 314 D 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 26/230 (11%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I +A +S + + +W+V+SG+ LK H V C F+ + ++SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D VRIW + T +C L + H+ ++ + G + IVS+S D C+
Sbjct: 131 DESVRIWDVKT--GKC---------LKTLPAHSDPVSAVHFNRDG--SLIVSSSYDGLCR 177
Query: 203 VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM-HI 261
+W G+ L+ + I D F S +G +AA + Y
Sbjct: 178 IWDTASGQCLKTL--------IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 262 IGSLSDHSKAVTCL----AYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307
+ + + H C+ + + G ++SGSED +V +W+ T IV+ +
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 66/203 (32%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEECESQRASHLYLHSFTGHTLRI 178
H +AV+ + FS +G +L S S D ++IW FE+ + +GH L I
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK------------TISGHKLGI 71
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238
+D+ + S +VSAS+D+T K+W + G+ L+
Sbjct: 72 SDV--AWSSDSNLLVSASDDKTLKIWDVSSGKCLK------------------------- 104
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDP 297
+L HS V C ++ +L++SGS D VR+WD
Sbjct: 105 -------------------------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 298 ITHNIVRMFRLAKGPVNNILVVR 320
T ++ PV+ + R
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNR 162
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 75 VKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFS 131
+K+LPA +P+ + N G+ I G +W+ ASG+ LK V+ + FS
Sbjct: 145 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 204
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
+G ++++ + D +++W + L ++TGH I +
Sbjct: 205 PNGKYILAATLDNTLKLW-----------DYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 192 -IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232
IVS SED +W+L +++ + V+ + A P E++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 103/227 (45%), Gaps = 19/227 (8%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
++ + +S G + G G++ +W++A+G +++ H + V + FS D ++S S
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D +++W+ L EC+ + GH ++ + + TIVSAS D+T K
Sbjct: 493 DRTIKLWNTLG---ECK-----YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
VW+L +L + + +A+ P + +G +DG + + L AE S
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL-AEGKKLYSL---- 599
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308
+ + + L +S + + + +++WD + +IV ++
Sbjct: 600 -----EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKV 641
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
H+H+ V +V S DG F +SGS DG +R+W L A+ + F GHT +
Sbjct: 429 HSHF--VEDVVLSSDGQFALSGSWDGELRLWDL-----------AAGVSTRRFVGHTKDV 475
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLL---------KGRLLRNIVFPSVIDAIALDPA 229
+ + + + IVSAS DRT K+W+ L G R+ V L P
Sbjct: 476 --LSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP- 532
Query: 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
+ S D ++ + L+ + +L+ H+ V+ +A S G L SG +
Sbjct: 533 --TIVSASWDKTVKVWNLS---------NCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK 581
Query: 289 DGMVRVWD 296
DG+V +WD
Sbjct: 582 DGVVLLWD 589
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 126 TCLVFSEDGSFLISGSEDGCVRIWSL 151
T L +S DGS L SG DG +R+W +
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 192 IVSASEDRTCKVWSLLK-----GRLLRNIVFPS-VIDAIALDPAEHVFYAGSRDGSIYIA 245
IVSAS D++ +W L K G R + S ++ + L +GS DG + +
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPI 298
L A + G H+K V +A+S + ++S S D +++W+ +
Sbjct: 458 DLAAGVSTRRFVG---------HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
+ + +S G + G G + +W++ +G +++ H + V + FS D ++SGS
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D +++W+ L V C+ Y H+ ++ + + IVS D+ K
Sbjct: 126 DKTIKLWNTLGV---CK-------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
VW+L +L N I ++ + + P + +G +DG + LN G H+
Sbjct: 176 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE--------GKHL 227
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
D + L +S + + +++WD
Sbjct: 228 Y--TLDGGDIINALCFSPNRYWLCAATGPSIKIWD 260
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 15/89 (16%)
Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
H+H+ V+ +V S DG F +SGS DG +R+W L T ++R F GHT +
Sbjct: 62 HSHF--VSDVVISSDGQFALSGSWDGTLRLWDLTT---GTTTRR--------FVGHTKDV 108
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLL 207
+ + + + IVS S D+T K+W+ L
Sbjct: 109 --LSVAFSSDNRQIVSGSRDKTIKLWNTL 135
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 221 IDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279
+ IA P + + SRD +I + L + ++YG+ +L HS V+ + S+
Sbjct: 18 VTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQ-RALRGHSHFVSDVVISS 73
Query: 280 -GDLLISGSEDGMVRVWDPITHNIVRMF 306
G +SGS DG +R+WD T R F
Sbjct: 74 DGQFALSGSWDGTLRLWDLTTGTTTRRF 101
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 192 IVSASEDRTCKVWSLLKG--------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243
I+SAS D+T +W L + R LR + + + +GS DG++
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPI 298
+ L +T + +G H+K V +A+S+ + ++SGS D +++W+ +
Sbjct: 89 LWDL-----TTGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 135
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
+ + +S G + G G + +W++ +G +++ H + V + FS D ++SGS
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D +++W+ L V C+ Y H+ ++ + + IVS D+ K
Sbjct: 149 DKTIKLWNTLGV---CK-------YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 203 VWSLLKGRLLRN-IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
VW+L +L N I ++ + + P + +G +DG + LN G H+
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE--------GKHL 250
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
D + L +S + + +++WD
Sbjct: 251 Y--TLDGGDIINALCFSPNRYWLCAATGPSIKIWD 283
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 15/89 (16%)
Query: 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178
H+H+ V+ +V S DG F +SGS DG +R+W L T ++R F GHT +
Sbjct: 85 HSHF--VSDVVISSDGQFALSGSWDGTLRLWDLTT---GTTTRR--------FVGHTKDV 131
Query: 179 TDIVIGYGGVSATIVSASEDRTCKVWSLL 207
+ + + + IVS S D+T K+W+ L
Sbjct: 132 --LSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 165 HLYLHSFTGHTLRITDIVIGYGG----VSAT------IVSASEDRTCKVWSLLKG----- 209
+LY S + + + G+ G ++ T I+SAS D+T +W L +
Sbjct: 17 NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG 76
Query: 210 ---RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266
R LR + + + +GS DG++ + L +T + +G
Sbjct: 77 IPQRALRG--HSHFVSDVVISSDGQFALSGSWDGTLRLWDL-----TTGTTTRRFVG--- 126
Query: 267 DHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPI 298
H+K V +A+S+ + ++SGS D +++W+ +
Sbjct: 127 -HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 221 IDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279
+ IA P + + SRD +I + L + ++YG+ +L HS V+ + S+
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDE---TNYGIPQ-RALRGHSHFVSDVVISS 96
Query: 280 -GDLLISGSEDGMVRVWDPITHNIVRMF 306
G +SGS DG +R+WD T R F
Sbjct: 97 DGQFALSGSWDGTLRLWDLTTGTTTRRF 124
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 130/306 (42%), Gaps = 33/306 (10%)
Query: 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSIL 64
+ S+ D I WD E+G + K ++ F S +L SA +I
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS-----FDHSGKLLASCSADM-TIK 175
Query: 65 YWSWSKPQVEVKSLPAEP--IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
W + + ++++ + ++ +G +I + I MWEV +G +K + H
Sbjct: 176 LWDFQGFEC-IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR 234
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---------HSFTG 173
V + ++DG+ + S S D VR+W + T +EC+++ H ++ S++
Sbjct: 235 EWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKAELREHRHVVECISWAPESSYSS 292
Query: 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232
+ G ++S S D+T K+W + G L +V + + + +
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV-------L 345
Query: 233 FYAGSRDGSIYIAALNAESPSTSSY-GMHIIGSLSDHSKAVTCLAY-STGDLLISGSEDG 290
F++G G ++ + ++ Y + +L+ H VT L + T +++GS D
Sbjct: 346 FHSG---GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 291 MVRVWD 296
V+VW+
Sbjct: 403 TVKVWE 408
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 95/234 (40%), Gaps = 38/234 (16%)
Query: 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141
P+ + + + + + I +W+ +G + H +V + F G L S S
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
D +++W F+ E R H GH ++ + I G IVSAS D+T
Sbjct: 170 ADMTIKLWD----FQGFECIRTMH-------GHDHNVSSVSIMPNG--DHIVSASRDKTI 216
Query: 202 KVWSLLKG-------------RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI------ 242
K+W + G R++R ++I + + D V+ +++
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
++ + +P +S S+S+ + + T + G L+SGS D +++WD
Sbjct: 277 HVVECISWAPESS------YSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 24/178 (13%)
Query: 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179
H VT ++F S ++S SED +++W +E + +R + GHT +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWD----YETGDFER-------TLKGHTDSVQ 154
Query: 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238
DI + G + S S D T K+W +R + + ++++ P + SR
Sbjct: 155 DISFDHSG--KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR 212
Query: 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYSTGDLLISGSEDGMVRVW 295
D +I + + + + + + H + V + G L+ S S D VRVW
Sbjct: 213 DKTIKMWEVQTG---------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 13/140 (9%)
Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD 227
++ +GH +T ++ + V + +VSASED T KVW G R + + I+ D
Sbjct: 102 YALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YSTGDLLISG 286
+ + + S D +I + G I ++ H V+ ++ GD ++S
Sbjct: 160 HSGKLLASCSADMTIKLWDFQ---------GFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210
Query: 287 SEDGMVRVWDPITHNIVRMF 306
S D +++W+ T V+ F
Sbjct: 211 SRDKTIKMWEVQTGYCVKTF 230
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 26/225 (11%)
Query: 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133
++ L + + H YIA G ++G I + E+ + R+ + H + V + F+ D
Sbjct: 961 QIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTAD 1020
Query: 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193
LIS S+D +++W+ ++C R GH + D + ++ ++
Sbjct: 1021 EKTLISSSDDAEIQVWNW--QLDKCIFLR----------GHQETVKDFRLLK---NSRLL 1065
Query: 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252
S S D T KVW+++ G ++ V + + + F + S D + I + + P
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP 1125
Query: 253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296
+ L H+ V C A+S LL +G ++G +R+W+
Sbjct: 1126 ---------LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 79/402 (19%), Positives = 154/402 (38%), Gaps = 64/402 (15%)
Query: 50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP-------IAANSHGTYIAGGGQSG 102
++L+ + +G +LY W + + +L ++P + G IA G
Sbjct: 586 AKLQAKQEVDNG-MLYLEWINKK-NITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADK 643
Query: 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162
+ +++ +G L + AH V C FS D F+ + S D V+IW+ +T
Sbjct: 644 TLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT--------- 694
Query: 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSV 220
+H++ H+ ++ + + S D K+W L + RN +F +
Sbjct: 695 --GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD-LNQKECRNTMFGHTNS 751
Query: 221 IDAIALDPAEHVFYAGSRDGSIYI----AALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
++ P + + + S DG++ + +A +S + + +++ D V C +
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCS 811
Query: 277 YSTGDLLISGSEDGMVRVWDPIT-----------HNIVRMFRLAKGPVNNILVVRRPLYL 325
+S I + + ++D T H+ ++ + P N++ VV Y
Sbjct: 812 WSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS--PQNHLAVVALSQYC 869
Query: 326 ----NLGSFSNPHTS----SRRHGSQLPPPLDKYVTSADEDVDKKGVIRLPSLYNAPRDA 377
N S S S HG P ++TS+D+ IRL
Sbjct: 870 VELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ-----TIRL---------- 914
Query: 378 SYISHRTIENHIKELQQQGSSAATEMEVERLKRECNRTLQMV 419
+ + + +N L+Q+ E EV L + R LQ++
Sbjct: 915 -WETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 93 TYIAGGGQSGDIYMWEVASGRLL--------KKWHAHYRAVTCLVFSEDGSFLISGSEDG 144
T +A G +G+I +W V++G LL + H VT L FS DG LIS G
Sbjct: 1146 TLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--G 1203
Query: 145 CVRIWSLLT 153
++ W+++T
Sbjct: 1204 YIKWWNVVT 1212
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
L + H V C FS D + L +G ++G +RIW++
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 21/239 (8%)
Query: 62 SILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH- 119
S+ W+ Q + K L + + +A + I GG+ + +W V G +
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSR 148
Query: 120 -AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176
AH V+C+ FS D ++SG D V++W L A+ + GHT
Sbjct: 149 GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL-----------ATGRLVTDLKGHTN 197
Query: 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236
+T + + G + S+ +D ++W L KG L + + I+ I P + A
Sbjct: 198 YVTSVTVSPDG--SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAA 255
Query: 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295
+ G I I L + H GS + V+ + G L SG D ++RVW
Sbjct: 256 TEKG-IRIFDLENKDIIVELAPEH-QGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
+ +A +++G + + +W + +G+ K+ H + V + FS D ++SG
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
D +R+W+ V EC ++ S HT ++ + + IVS D K
Sbjct: 130 DNALRVWN---VKGEC-------MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 203 VWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240
VW L GRL+ ++ + + ++ + P + + +DG
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDG 218
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 30/242 (12%)
Query: 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140
E + + S + G + D + E + G ++ H V+ + S +G+F +S
Sbjct: 26 ETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSA 85
Query: 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200
S D +R+W+L +C+ + F GHT + + + + + IVS D
Sbjct: 86 SWDHSLRLWNLQN--GQCQ---------YKFLGHTKDV--LSVAFSPDNRQIVSGGRDNA 132
Query: 201 CKVWSLLKGRLLRNI---VFPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTS 255
+VW+ +KG + + + + P+ V +G D + + L
Sbjct: 133 LRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATG----- 186
Query: 256 SYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314
++ L H+ VT + S G L S +DG+ R+WD +T A P+N
Sbjct: 187 ----RLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD-LTKGEALSEMAAGAPIN 241
Query: 315 NI 316
I
Sbjct: 242 QI 243
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
L A+ SP + ++ G+ + + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
LA+S G L +G D ++RVW +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 66 WSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
W+ ++ Q+E + I + A+ GT IA G+ G+I +W +A+ + + A
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSL 151
V L FS + +L + + G ++++SL
Sbjct: 240 VFSLAFSPNRYWLAAATATG-IKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 51 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 110
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 111 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 158
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
L A+ SP + ++ G+ + + +SKA
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
LA+S G L +G D ++RVW +T N
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 66 WSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
W+ ++ Q+E + I + A+ GT IA G+ G+I +W +A+ + + A
Sbjct: 175 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 233
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSL 151
V L FS + +L + + G ++++SL
Sbjct: 234 VFSLAFSPNRYWLAAATATG-IKVFSL 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 67/275 (24%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
L A+ SP + ++ G+ + + +SKA
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
LA+S G L +G D ++RVW +T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 66 WSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
W+ ++ Q+E + I + A+ GT IA G+ G+I +W +A+ + + A
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSL 151
V L FS + +L + + G ++++SL
Sbjct: 240 VFSLAFSPNRYWLAAATATG-IKVFSL 265
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
+TCL F ++ ++I+G++D +R++ + + +L +GH + +
Sbjct: 124 VITCLQFEDN--YVITGADDKXIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
+GG+ +VS S DRT +VW + KG VF S + + + +++ Y GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
D ++++ L ES T + +G L H +V ++ G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
SGS D + VWD
Sbjct: 285 SGSYDNTLIVWD 296
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 85/230 (36%), Gaps = 45/230 (19%)
Query: 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVR 147
+HG + G + +W++ G + H V CL E + ++++GS D +
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 148 IWSLLTVFEECESQRASH-------LYLHS----------FTGHTLRITDIVIGYGGVSA 190
+W L ES H L H+ GH + V G+G +
Sbjct: 231 VWKL-----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR-TVSGHGNI-- 282
Query: 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI---ALDPAEHVFYAGSRDGSIYIAAL 247
+VS S D T VW + + + L + D I D + S D +I I L
Sbjct: 283 -VVSGSYDNTLIVWDVAQXKCL--YILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 248 -NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
N E T L H+ V L S L+S + DG +R WD
Sbjct: 340 ENGELXYT----------LQGHTALVGLLRLS-DKFLVSAAADGSIRGWD 378
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60 SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
SG + W++ + QVEV+S+ P++ + +I G I ++ +G +
Sbjct: 34 SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
+ AH + + +++SGS+D V++W+ E+ A +F GH
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
+ + S T S DRT KVWSL G+ N + +D L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
S D +I I +S + +L H V+ + T ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
G +++W+ T+ + + +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60 SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
SG + W++ + QVEV+S+ P++ + +I G I ++ +G +
Sbjct: 34 SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
+ AH + + +++SGS+D V++W+ E+ A +F GH
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW-------ENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
+ + S T S DRT KVWSL G+ N + +D L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
S D +I I +S + +L H V+ + T ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
G +++W+ T+ + + +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183
+TCL F ++ ++I+G++D +R++ + + +L +GH + +
Sbjct: 124 VITCLQFEDN--YVITGADDKMIRVYDSI-----------NKKFLLQLSGHDGGVWALKY 170
Query: 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY--AGSR 238
+GG+ +VS S DRT +VW + KG VF S + + + +++ Y GSR
Sbjct: 171 AHGGI---LVSGSTDRTVRVWDIKKGCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 239 DGSIYIAALNAESP--------------STSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284
D ++++ L ES T + +G L H +V ++ G++++
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIVV 284
Query: 285 SGSEDGMVRVWD 296
SGS D + VWD
Sbjct: 285 SGSYDNTLIVWD 296
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 87/230 (37%), Gaps = 45/230 (19%)
Query: 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVR 147
+HG + G + +W++ G + H V CL E + ++++GS D +
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 148 IWSLLTVFEECESQRASH-------LYLHS----------FTGHTLRITDIVIGYGGVSA 190
+W L ES H L H+ GH + V G+G +
Sbjct: 231 VWKL-----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR-TVSGHGNI-- 282
Query: 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI---ALDPAEHVFYAGSRDGSIYIAAL 247
+VS S D T VW + + + L + D I D + S D +I I L
Sbjct: 283 -VVSGSYDNTLIVWDVAQMKCL--YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 248 -NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
N E ++ +L H+ V L S L+S + DG +R WD
Sbjct: 340 ENGE----------LMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWD 378
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 106/255 (41%), Gaps = 39/255 (15%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I+ + + G ++A G + I +W++ + +++ H + + L + G L+SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG---GVSATIVSASEDR 199
D VRIW L T +C TL I D V G I + S DR
Sbjct: 186 DRTVRIWDLRT--GQCS--------------LTLSIEDGVTTVAVSPGDGKYIAAGSLDR 229
Query: 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY--------AGSRDGSIYIAAL---- 247
+VW G L+ + + D V + +GS D S+ + L
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 248 ---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD-LLISGSEDGMVRVWDPITHNIV 303
++++P++ + + IG H V +A + D ++SGS+D V WD + N +
Sbjct: 290 NKSDSKTPNSGTCEVTYIG----HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 304 RMFRLAKGPVNNILV 318
M + + V ++ V
Sbjct: 346 LMLQGHRNSVISVAV 360
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 23/199 (11%)
Query: 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGC----VRIWSLLTVF--EECESQRASHLYL 168
L K H V C+ FS DG +L +G V SL+ + ++ +L
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALD- 227
S L I + G + + +EDR ++W ++ R + I+ D +LD
Sbjct: 117 SSSPSSDLYIRSVCFSPDG--KFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLDY 173
Query: 228 -PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLI 284
P+ +GS D ++ I L S + S+ D VT +A S GD +
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCS-------LTLSIED---GVTTVAVSPGDGKYIA 223
Query: 285 SGSEDGMVRVWDPITHNIV 303
+GS D VRVWD T +V
Sbjct: 224 AGSLDRAVRVWDSETGFLV 242
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/275 (21%), Positives = 107/275 (38%), Gaps = 67/275 (24%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 117 KKASXIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Query: 247 LNAE-----------------SP------STSSYGMHIIG------------SLSDHSKA 271
L A+ SP + ++ G+ + + +SKA
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 272 ----VTCLAYST-GDLLISGSEDGMVRVWDPITHN 301
LA+S G L +G D ++RVW T N
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGS 62
L IA+SS D I WDLE+G + KS + P + F SQ +
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQ---IKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKV 146
Query: 63 ILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122
++ S + + I IA + G Y+A G G I ++++A+G+LL H
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSL 151
+ L FS D L++ S+DG ++I+ +
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 15/140 (10%)
Query: 74 EVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
++KS+ A P+ +A + Y+A G G + ++ V SG+ + + + +S
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
DG +L SG+ DG + I+ + A+ LH+ GH + I + + S
Sbjct: 174 PDGKYLASGAIDGIINIFDI-----------ATGKLLHTLEGHAMPIRSLT--FSPDSQL 220
Query: 192 IVSASEDRTCKVWSLLKGRL 211
+V+AS+D K++ + L
Sbjct: 221 LVTASDDGYIKIYDVQHANL 240
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 28/212 (13%)
Query: 112 GRLLKKWHAHYRAVTCLVF----SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
G L K+ AH A+ + + E+ +++GS D V++W R L
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----------RDERLD 71
Query: 168 LH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIA 225
L S GH L + + I + S+S D ++W L G+ +++I P +A
Sbjct: 72 LQWSLEGHQLGVVSVDISH--TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLI 284
P G+ G + I + + S L K + +AYS G L
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYS---------LDTRGKFILSIAYSPDGKYLA 180
Query: 285 SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
SG+ DG++ ++D T ++ P+ ++
Sbjct: 181 SGAIDGIINIFDIATGKLLHTLEGHAMPIRSL 212
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 45/212 (21%)
Query: 95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS---- 150
I G + I +W+ + + H +V CL + E +I+GS D VR+W
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDVNTG 203
Query: 151 --LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208
L T+ CE+ LH LR + +V+ S+DR+ VW +
Sbjct: 204 EMLNTLIHHCEA------VLH------LRFNN---------GMMVTCSKDRSIAVWDMAS 242
Query: 209 GR--LLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264
LR ++ + ++ + D V +G R ++ + ST + + +
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW-------NTSTCEF----VRT 291
Query: 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
L+ H + + CL Y L++SGS D +R+WD
Sbjct: 292 LNGHKRGIACLQYR-DRLVVSGSSDNTIRLWD 322
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154
+ G I +W++ G L+ H V C+ F D ++SG+ DG +++W L+
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA 366
Query: 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207
+ A L L + H+ R+ + IVS+S D T +W L
Sbjct: 367 LD--PRAPAGTLCLRTLVEHSGRVFRLQFD----EFQIVSSSHDDTILIWDFL 413
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 32/201 (15%)
Query: 104 IYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160
I +W++AS L + H AV + F D +++S S D +++W+ T CE
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----CE- 287
Query: 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS 219
++ + GH I + Y +VS S D T ++W + G LR +
Sbjct: 288 ------FVRTLNGHKRGIA--CLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 220 VIDAIALDPAEHVFYAGSRDGSI----YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275
++ I D V +G+ DG I +AAL+ +P+ G + +L +HS V L
Sbjct: 338 LVRCIRFDNKRIV--SGAYDGKIKVWDLVAALDPRAPA----GTLCLRTLVEHSGRVFRL 391
Query: 276 AYSTGDLLISGSEDGMVRVWD 296
+ ++S S D + +WD
Sbjct: 392 QFDEFQ-IVSSSHDDTILIWD 411
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 25/184 (13%)
Query: 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182
+ V CL + D ++SG D ++IW T+ EC+ TGHT + +
Sbjct: 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECK---------RILTGHTGSV--LC 178
Query: 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSI 242
+ Y I++ S D T +VW + G +L N + + L + S+D S
Sbjct: 179 LQYD--ERVIITGSSDSTVRVWDVNTGEML-NTLIHHCEAVLHLRFNNGMMVTCSKDRS- 234
Query: 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI 302
IA + SP+ + ++G H AV + + ++S S D ++VW+ T
Sbjct: 235 -IAVWDMASPTDITLRRVLVG----HRAAVNVVDFD-DKYIVSASGDRTIKVWNTSTCEF 288
Query: 303 VRMF 306
VR
Sbjct: 289 VRTL 292
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
+ + I S+ SK V CL Y + +SG D +++WD N + R+ G ++
Sbjct: 121 HSLQRIHCRSETSKGVYCLQYDDQKI-VSGLRDNTIKIWDK---NTLECKRILTGHTGSV 176
Query: 317 LVVR 320
L ++
Sbjct: 177 LCLQ 180
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
L A+
Sbjct: 225 LAAK 228
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF 171
G ++ + H V + DG++ +S S D +R+W + T Y F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------GETY-QRF 103
Query: 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE 230
GH + + I ++ I+S S D+T KVW++ KG+ L ++ + + + P E
Sbjct: 104 VGHKSDVMSVDIDKK--ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNE 160
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYG-MHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
D I+A N + + I H+ + L S G L+ S +
Sbjct: 161 K----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 289 DGMVRVWD 296
DG + +W+
Sbjct: 217 DGEIMLWN 224
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 66 WSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
W+ ++ Q+E + I + A+ GT IA G+ G+I +W +A+ + + A
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSL 151
V L FS + +L + + G ++++SL
Sbjct: 240 VFSLAFSPNRYWLAAATATG-IKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 27/184 (14%)
Query: 82 PIKPIAANSH----------GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
P++ +SH G Y + +W+VA+G +++ H V +
Sbjct: 57 PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDID 116
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI----GYGG 187
+ S +ISGS D +++W T+ +C L + GH ++ + +
Sbjct: 117 KKASMIISGSRDKTIKVW---TIKGQC---------LATLLGHNDWVSQVRVVPNEKADD 164
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
S TI+SA D+ K W+L + ++ + + S I+ + P + + +DG I +
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 247 LNAE 250
L A+
Sbjct: 225 LAAK 228
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 21/188 (11%)
Query: 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF 171
G ++ + H V + DG++ +S S D +R+W + T Y F
Sbjct: 55 GVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVAT----------GETY-QRF 103
Query: 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE 230
GH + + I ++ I+S S D+T KVW++ KG+ L ++ + + + P E
Sbjct: 104 VGHKSDVMSVDIDKK--ASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNE 160
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYG-MHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
D I+A N + + I H+ + L S G L+ S +
Sbjct: 161 K----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 289 DGMVRVWD 296
DG + +W+
Sbjct: 217 DGEIMLWN 224
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 66 WSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA 124
W+ ++ Q+E + I + A+ GT IA G+ G+I +W +A+ + + A
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE 239
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSL 151
V L FS + +L + + G ++++SL
Sbjct: 240 VFSLAFSPNRYWLAAATATG-IKVFSL 265
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60 SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
SG + W++ + QVEV+S+ P++ + +I G I ++ +G +
Sbjct: 34 SGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
+ AH + + +++SGS+D V++W+ E+ A +F GH
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
+ + S T S DRT KVWSL G+ N + +D L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
S D +I I +S + +L H V+ + T ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
G +++W+ T+ + + +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 108/260 (41%), Gaps = 34/260 (13%)
Query: 60 SGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117
SG + W++ + QVEV+S+ P++ + +I G I ++ +G +
Sbjct: 34 SGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92
Query: 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177
+ AH + + +++SGS+D V++W+ E+ A +F GH
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALE---QTFEGHEHF 142
Query: 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------VIDAIALDPAE 230
+ + S T S DRT KVWSL G+ N + +D L P +
Sbjct: 143 VMCVAFNPKDPS-TFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPL-PDK 198
Query: 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-STGDLLISGSED 289
S D +I I +S + +L H V+ + T ++ISGSED
Sbjct: 199 PYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 290 GMVRVWDPITHNIVRMFRLA 309
G +++W+ T+ + + +
Sbjct: 250 GTLKIWNSSTYKVEKTLNVG 269
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190
+ED LISGS D V IW L +EE E + + TGH ++D+ + A
Sbjct: 36 NEDSPVLISGSRDKTVMIWKL---YEE-EQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91
Query: 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249
+S+S D+T ++W L G + V S + ++A P + + I + +
Sbjct: 92 --ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
Query: 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----------GDLLISGSEDGMVRVWDPI 298
E +S+ +HS V+C+ YS S DG ++VW+
Sbjct: 150 ECKFSSA-------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-T 201
Query: 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLG 328
I F+ + VN++ + Y+ G
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATG 231
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139
A ++P A Y A G G + +W + ++ + AH V L S +G ++ +
Sbjct: 177 ANKVQPFAP-----YFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT 230
Query: 140 GSEDGCVRIWSLLTV 154
G +D + IW +L +
Sbjct: 231 GGKDKKLLIWDILNL 245
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 28/200 (14%)
Query: 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECE 159
G +W+V SG+LL+ +H H V CL SE G+ +SG D +W + + +C
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC- 232
Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
+ +F H + + Y S S+D TC+++ L R + S
Sbjct: 233 --------VQAFETHESDVNSVR--YYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282
Query: 220 VI---DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276
+I ++ + + +AG D +I + + S + +G H V+ L
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG---------HENRVSTLR 333
Query: 277 YS-TGDLLISGSEDGMVRVW 295
S G SGS D +RVW
Sbjct: 334 VSPDGTAFCSGSWDHTLRVW 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145
+A + G GG +W++ SG+ ++ + H V + + G SGS+D
Sbjct: 204 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT 263
Query: 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205
R++ L E + S ++ S +L + GY D T VW
Sbjct: 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGY-----------NDYTINVWD 312
Query: 206 LLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAA 246
+LKG + +I+F + + + + P F +GS D ++ + A
Sbjct: 313 VLKGSRV-SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172
R LK H V C+ + +D ++S S+DG V +W T +E H+ T
Sbjct: 58 RTLK---GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-----------HAVT 103
Query: 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL-------LKGRLLRNIVFPSVIDAIA 225
+ + Y I D C V+ L + + + + + A +
Sbjct: 104 MPCTWV--MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACS 161
Query: 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS---TGDL 282
++ S DG+ A + ES ++ S H V CL + TG+
Sbjct: 162 FTNSDMQILTASGDGT--CALWDVESG-------QLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316
+SG D VWD + V+ F + VN++
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV 246
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALD--PAE--HVFYAGSRDGSIYIAAL 247
I++AS D TC +W + G+LL++ D + LD P+E + F +G D + +
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296
+ G + + S + Y +GD SGS+D R++D
Sbjct: 228 RS--------GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 100 QSGDIYMWEVASGR--LLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155
SG + +WE+ L+ K+ + H V L DG+ +SG +D V++W L
Sbjct: 113 DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL---- 168
Query: 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215
SQ+A L S+ H+ + + V G +S ED +W K + I
Sbjct: 169 ----SQKA---VLKSYNAHSSEV-NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220
Query: 216 VF---PSVIDAIALDP-AEHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHSK 270
F ++ ++ P + F G G++ + + N +S TS+ HS+
Sbjct: 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV----------HSQ 270
Query: 271 AVTCLAYS--TGDLLISGSEDGMVRVWDPITHNIVR 304
+T LAYS + L S SED V V D + R
Sbjct: 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFR 306
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISG 140
+K ++ S GT GG+ + +W+++ +LK ++AH V C+ +D FL G
Sbjct: 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG 201
Query: 141 SEDGCVRIW 149
EDG + +W
Sbjct: 202 -EDGRILLW 209
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 82/187 (43%), Gaps = 39/187 (20%)
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
VTCL +S DG+ +++G E+G +R+W+ + L+ H I +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN------------KTGALLNVLNFHRAPIVSVKWN 158
Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----SVIDA--------IALDPA--- 229
G I+S + +W+++ G ++++ S I+A + +D
Sbjct: 159 KDGTH--IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD 216
Query: 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSE 288
+ F G+I++ + ++P+ G L H ++ L ++ T LL+S S+
Sbjct: 217 DDKFVIPGPKGAIFVYQITEKTPT---------GKLIGHHGPISVLEFNDTNKLLLSASD 267
Query: 289 DGMVRVW 295
DG +R+W
Sbjct: 268 DGTLRIW 274
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 39/157 (24%)
Query: 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
G G I+++++ K H+ ++ L F++ L+S S+DG +RIW
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW--------- 274
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT------IVSASEDRTCKVWSLLKGRLL 212
+ + F GH+ I VSA+ ++S S D + ++WSL + LL
Sbjct: 275 --HGGNGNSQNCFYGHSQSI---------VSASWVGDDKVISCSMDGSVRLWSLKQNTLL 323
Query: 213 RNIVFPSVIDAIALDPAEHVFYAG--SRDGSIYIAAL 247
S++D + + +AG S+DG Y A
Sbjct: 324 A----LSIVDGVPI-------FAGRISQDGQKYAVAF 349
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 269 SKAVTCLAYS-TGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313
+ VTCLA+S G+ +++G E+G +R+W+ T ++ + + P+
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFHRAPI 152
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 79/207 (38%), Gaps = 26/207 (12%)
Query: 92 GTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149
G + GG++ + +W++A + R+ + + A L S D S DG + +W
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
L + + F GHT + I I G + + D T + W L +G
Sbjct: 169 DL-----------HNQTLVRQFQGHTDGASCIDISNDGTK--LWTGGLDNTVRSWDLREG 215
Query: 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269
R L+ F S I ++ P G ++ + +N Y +H+ H
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP----DKYQLHL------HE 265
Query: 270 KAVTCLAYS-TGDLLISGSEDGMVRVW 295
V L ++ G +S +D ++ W
Sbjct: 266 SCVLSLKFAYCGKWFVSTGKDNLLNAW 292
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 101 SGD--IYMWEVASGRLLKKWHAHY------RAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
SGD +W+V +G+ + + + + ++ + S + + ISGS D VR+W L
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL- 235
Query: 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212
R + + ++ GH I + G + S+D TC+++ + G L
Sbjct: 236 ---------RITSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQL 284
Query: 213 --------RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIG 263
RN ++ ++A + + +AG +G Y+ L AE + +G
Sbjct: 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM-------VLNLG 337
Query: 264 SLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVW 295
+L + H ++CL S+ G L +GS D +++W
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 70 KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAV 125
+P LP + +A + G + G +GD Y+W+ ++ ++H +
Sbjct: 290 EPDRNDNELPI--VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347
Query: 126 TCLVFSEDGSFLISGSEDGCVRIWSL 151
+CL S DGS L +GS D ++IW+
Sbjct: 348 SCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/230 (18%), Positives = 94/230 (40%), Gaps = 39/230 (16%)
Query: 94 YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153
+I Q G + +W + + H V F+ +G + G D I++L +
Sbjct: 80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139
Query: 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT----------IVSASEDRTCKV 203
++ R + + ++ ++ G+ G +++ +++ S D+TC +
Sbjct: 140 -----QADRDGN----------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL 184
Query: 204 WSLLKGRLLRNI--VFPS--VIDAIALDPAE---HVFYAGSRDGSIYIAALNAESPSTSS 256
W + G+ + FPS D ++L ++F +GS D ++ + L S + +
Sbjct: 185 WDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT 244
Query: 257 YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF 306
Y H + + G +GS+DG R++D T + ++++
Sbjct: 245 YHGH-------EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 266 SDHSKAVTCLAYST--GDLLISGSEDGMVRVWD-PITHNIVRMFRLAKGPVNNI 316
S H+ V L+ ++ ++ ISGS D VR+WD IT VR + +G +N++
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV 255
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 74 EVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL---KKWHAHYRAVTCL 128
EVK++ PAE I +A +++G ++ QS + + VA+ L W H V C+
Sbjct: 484 EVKTIVHPAE-ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 542
Query: 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188
+S D L +GS D V +W++ ++ + H + H + + VI
Sbjct: 543 SWSPDNVRLATGSLDNSVIVWNM--------NKPSDHPIIIK-GAHAMSSVNSVIWLN-- 591
Query: 189 SATIVSASEDRTCKVWSL 206
TIVSA +D K W++
Sbjct: 592 ETTIVSAGQDSNIKFWNV 609
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 28/220 (12%)
Query: 95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT- 153
I G + ++E + + H + V + ++ DGS S DG + +++ +
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 154 ----VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209
VFE+ + +H +G +T + I SAS D+T K+W++
Sbjct: 223 TKTGVFEDDSLKNVAH------SGSVFGLT-----WSPDGTKIASASADKTIKIWNVATL 271
Query: 210 RLLRNIVFPSVID--AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267
++ + I + I+ + + + + S +G I S YG
Sbjct: 272 KVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG--------- 322
Query: 268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF 306
H+KA+T L+ S G L S +G + WD T R+F
Sbjct: 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 71 PQVEVKSLPAEPIKPIAA---NSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------A 120
P + KS E K + + N G+ A G G I ++ G + A
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157
H +V L +S DG+ + S S D ++IW++ T+ E
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 48/259 (18%)
Query: 98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157
G GDI + + + AH +T L F G LIS S+D ++IWS+ ++
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV----KD 167
Query: 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217
+ R + GH +TDI I G ++SAS D T ++W G +
Sbjct: 168 GSNPR-------TLIGHRATVTDIAIIDRG--RNVLSASLDGTIRLWECGTGTTIHTFNR 218
Query: 218 PSV----IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-----GSLSDH 268
+++IAL + G+ I+ + +YG ++I G ++ H
Sbjct: 219 KENPHDGVNSIAL-------FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 271
Query: 269 S-----------KAVTCLAYS------TGDLLISGSEDGMVRVWDPITHNI-VRMFRLAK 310
+ TC S + + +G E+GM+ WD + V F + +
Sbjct: 272 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 331
Query: 311 G-PVNNILVVRRPLYLNLG 328
G P+NN+ L+++ G
Sbjct: 332 GTPINNVYFAAGALFVSSG 350
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 72 QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
Q E+ I + G + Q + +W V G + H VT +
Sbjct: 128 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 187
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
+ G ++S S DG +R+W EC + H +
Sbjct: 188 DRGRNVLSASLDGTIRLW-------ECGTGTTIHTF 216
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 104/259 (40%), Gaps = 48/259 (18%)
Query: 98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157
G GDI + + + AH +T L F G LIS S+D ++IWS+ ++
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSV----KD 170
Query: 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217
+ R + GH +TDI I G ++SAS D T ++W G +
Sbjct: 171 GSNPR-------TLIGHRATVTDIAIIDRG--RNVLSASLDGTIRLWECGTGTTIHTFNR 221
Query: 218 PSV----IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-----GSLSDH 268
+++IAL + G+ I+ + +YG ++I G ++ H
Sbjct: 222 KENPHDGVNSIAL-------FVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274
Query: 269 S-----------KAVTCLAYS------TGDLLISGSEDGMVRVWDPITHNI-VRMFRLAK 310
+ TC S + + +G E+GM+ WD + V F + +
Sbjct: 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334
Query: 311 G-PVNNILVVRRPLYLNLG 328
G P+NN+ L+++ G
Sbjct: 335 GTPINNVYFAAGALFVSSG 353
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 72 QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131
Q E+ I + G + Q + +W V G + H VT +
Sbjct: 131 QREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167
+ G ++S S DG +R+W EC + H +
Sbjct: 191 DRGRNVLSASLDGTIRLW-------ECGTGTTIHTF 219
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 74/198 (37%), Gaps = 70/198 (35%)
Query: 103 DIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159
++Y+W SG L + + Y V + +S DGSFL G +G V I+ + E
Sbjct: 114 NVYVWNADSGSVSALAETDESTY--VASVKWSHDGSFLSVGLGNGLVDIY-------DVE 164
Query: 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219
SQ L + GH R+ C W+
Sbjct: 165 SQTK----LRTMAGHQARVG---------------------CLSWN-------------- 185
Query: 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-S 278
HV +GSR G+I+ + + H IG+L HS V LA+ S
Sbjct: 186 ----------RHVLSSGSRSGAIHHHDVRIAN--------HQIGTLQGHSSEVCGLAWRS 227
Query: 279 TGDLLISGSEDGMVRVWD 296
G L SG D +V++WD
Sbjct: 228 DGLQLASGGNDNVVQIWD 245
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 101 SGDIY--MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
SGD +W++ +G+ + H V L + D +SG+ D ++W +
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV------- 224
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218
+ +FTGH I I G + + S+D TC+++ L + L
Sbjct: 225 ----REGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHD 278
Query: 219 SV---IDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSDHSKAVTC 274
++ I +++ + + AG D + + AL A+ G L+ H V+C
Sbjct: 279 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA----------GVLAGHDNRVSC 328
Query: 275 LAYSTGDLLI-SGSEDGMVRVWD 296
L + + + +GS D +++W+
Sbjct: 329 LGVTDDGMAVATGSWDSFLKIWN 351
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I ++ + G + G + +W+ H V+CL ++DG + +GS
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 143 DGCVRIWS 150
D ++IW+
Sbjct: 344 DSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 101 SGDIY--MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
SGD +W++ +G+ + H V L + D +SG+ D ++W +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV------- 213
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218
+ +FTGH I I G + + S+D TC+++ L + L
Sbjct: 214 ----REGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHD 267
Query: 219 SV---IDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSDHSKAVTC 274
++ I +++ + + AG D + + AL A+ G L+ H V+C
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA----------GVLAGHDNRVSC 317
Query: 275 LAYSTGDLLI-SGSEDGMVRVWD 296
L + + + +GS D +++W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I ++ + G + G + +W+ H V+CL ++DG + +GS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 143 DGCVRIWS 150
D ++IW+
Sbjct: 333 DSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 101 SGDIY--MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
SGD +W++ +G+ + H V L + D +SG+ D ++W +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV------- 213
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218
+ +FTGH I I G + + S+D TC+++ L + L
Sbjct: 214 ----REGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHD 267
Query: 219 SV---IDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSDHSKAVTC 274
++ I +++ + + AG D + + AL A+ G L+ H V+C
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA----------GVLAGHDNRVSC 317
Query: 275 LAYSTGDLLI-SGSEDGMVRVWD 296
L + + + +GS D +++W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I ++ + G + G + +W+ H V+CL ++DG + +GS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 143 DGCVRIWS 150
D ++IW+
Sbjct: 333 DSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 101 SGDIY--MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
SGD +W++ +G+ + H V L + D +SG+ D ++W +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV------- 213
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218
+ +FTGH I I G + + S+D TC+++ L + L
Sbjct: 214 ----REGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHD 267
Query: 219 SV---IDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSDHSKAVTC 274
++ I +++ + + AG D + + AL A+ G L+ H V+C
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA----------GVLAGHDNRVSC 317
Query: 275 LAYSTGDLLI-SGSEDGMVRVWD 296
L + + + +GS D +++W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I ++ + G + G + +W+ H V+CL ++DG + +GS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 143 DGCVRIWS 150
D ++IW+
Sbjct: 333 DSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 30/203 (14%)
Query: 101 SGDIY--MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158
SGD +W++ +G+ + H V L + D +SG+ D ++W +
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV------- 213
Query: 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218
+ +FTGH I I G + + S+D TC+++ L + L
Sbjct: 214 ----REGMCRQTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYSHD 267
Query: 219 SV---IDAIALDPAEHVFYAGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSDHSKAVTC 274
++ I +++ + + AG D + + AL A+ G L+ H V+C
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA----------GVLAGHDNRVSC 317
Query: 275 LAYSTGDLLI-SGSEDGMVRVWD 296
L + + + +GS D +++W+
Sbjct: 318 LGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142
I ++ + G + G + +W+ H V+CL ++DG + +GS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 143 DGCVRIWS 150
D ++IW+
Sbjct: 333 DSFLKIWN 340
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 94/217 (43%), Gaps = 34/217 (15%)
Query: 101 SGDIYMWEVASGRLL--KKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156
SG + +WE+ L K+ + H V+ + G+ +SGS+D C+++W L
Sbjct: 102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL----- 156
Query: 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216
A + L S+ H ++T V + +S SED +W + I
Sbjct: 157 ------AQQVVLSSYRAHAAQVT-CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG 209
Query: 217 FPS---VIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272
+ + ++A P + VF G +G++ + ++ STS + S + HS+ V
Sbjct: 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL----VDTKSTS-----CVLSSAVHSQCV 260
Query: 273 TCLAYS--TGDLLISGSEDGMVRVWDPITHNIVRMFR 307
T L +S + L S SED + V D ++ +FR
Sbjct: 261 TGLVFSPHSVPFLASLSEDCSLAVLD---SSLSELFR 294
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGS 141
+ ++ S GT G + I +W++A +L + AH VTC+ S S +S S
Sbjct: 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCS 189
Query: 142 EDGCVRIW 149
ED + +W
Sbjct: 190 EDNRILLW 197
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 99/289 (34%), Gaps = 78/289 (26%)
Query: 57 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116
SASSG IL Q+ P E I +A G Y+A G S ++ +W+V + L+
Sbjct: 142 SASSGDIL-------QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 117 K------------WHA-----------------------------HYRAVTCLVFSEDGS 135
W++ H + V L ++ DG
Sbjct: 195 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI--------VIGYGG 187
L SG D V +W + L +FT H + + V+ GG
Sbjct: 255 HLASGGNDNLVNVW-------PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 307
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
+ DR ++W++ G L + S + +I P +G G +
Sbjct: 308 -------GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG--HGFAQNQLV 358
Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVW 295
+ P+ M + L H+ V L S G + S + D +R+W
Sbjct: 359 IWKYPT-----MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 99/289 (34%), Gaps = 78/289 (26%)
Query: 57 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116
SASSG IL Q+ P E I +A G Y+A G S ++ +W+V + L+
Sbjct: 131 SASSGDIL-------QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 117 K------------WHA-----------------------------HYRAVTCLVFSEDGS 135
W++ H + V L ++ DG
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI--------VIGYGG 187
L SG D V +W + L +FT H + + V+ GG
Sbjct: 244 HLASGGNDNLVNVW-------PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 296
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
+ DR ++W++ G L + S + +I P +G G +
Sbjct: 297 -------GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG--HGFAQNQLV 347
Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVW 295
+ P+ M + L H+ V L S G + S + D +R+W
Sbjct: 348 IWKYPT-----MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 35/232 (15%)
Query: 78 LPAEPIKP---IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFS 131
+PA P +A N GT +A G I +W + K H R V + +S
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191
G++L S S D IW EC + + GH + + G
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFEC---------VTTLEGHENEVKSVAWAPSG--NL 119
Query: 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALD-------PAEHVFYAGSRDGSIYI 244
+ + S D++ VW + + + SV+++ D P++ + + S D ++ +
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECV---SVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Query: 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVW 295
+ +L H V LA+ +G L S S+D VR+W
Sbjct: 177 YREEEDD-------WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 24/226 (10%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSED 143
+A S +I D WE++ W AH ++ + ++ E G + S S D
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAIDWASPEYGRIIASASYD 80
Query: 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203
V++W EEC +R + L + + +L + G+ + D ++
Sbjct: 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LACLGNDGILRL 138
Query: 204 WSLLKGRLLRNIVFPSVIDAIALDPAEH------VFYAGSRDGSIYIAALNAESPSTSSY 257
+ L+ LR+ S + +++ PA H + + SR +A E
Sbjct: 139 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR 198
Query: 258 G----MHIIGSLSDHSKAVTCLAYSTG-----DLLISGSEDGMVRV 294
G +H+ L H + ++++ L+ +G +DG +R+
Sbjct: 199 GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 99/289 (34%), Gaps = 78/289 (26%)
Query: 57 SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116
SASSG IL Q+ P E I +A G Y+A G S ++ +W+V + L+
Sbjct: 51 SASSGDIL-------QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 117 K------------WHA-----------------------------HYRAVTCLVFSEDGS 135
W++ H + V L ++ DG
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI--------VIGYGG 187
L SG D V +W + L +FT H + + V+ GG
Sbjct: 164 HLASGGNDNLVNVW-------PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG 216
Query: 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247
+ DR ++W++ G L + S + +I P +G G +
Sbjct: 217 -------GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG--HGFAQNQLV 267
Query: 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-TGDLLISGSEDGMVRVW 295
+ P+ M + L H+ V L S G + S + D +R+W
Sbjct: 268 IWKYPT-----MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 88/226 (38%), Gaps = 24/226 (10%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSED 143
+A S +I D WE++ W AH ++ + ++ E G + S S D
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAIDWASPEYGRIIASASYD 78
Query: 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203
V++W EEC +R + L + + +L + G+ + D ++
Sbjct: 79 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LACLGNDGILRL 136
Query: 204 WSLLKGRLLRNIVFPSVIDAIALDPAEH------VFYAGSRDGSIYIAALNAESPSTSSY 257
+ L+ LR+ S + +++ PA H + + SR +A E
Sbjct: 137 YDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR 196
Query: 258 G----MHIIGSLSDHSKAVTCLAYSTG-----DLLISGSEDGMVRV 294
G +H+ L H + ++++ L+ +G +DG +R+
Sbjct: 197 GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 242
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 149 WSLLTVFEECESQRASHLYLHS-----FTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202
W ++ F + Q+ + +++ F T ITD+ I YGG+ AT++SA D++C+
Sbjct: 422 WEFVSAFRQAPRQQNAFATVNAGMKVVFKEDTNTITDLGILYGGIGATVISA--DKSCR 478
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 184 GYG-----GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI----DAIALDPAEHVFY 234
GYG +S ++SAS+D T +W + G IV I A+ D A H+ +
Sbjct: 182 GYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLH 241
Query: 235 A---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS--TGDLLISGSED 289
GS + + S +T+S H++ + H+ V CL+++ + +L +GS D
Sbjct: 242 ESLFGSVADDQKLXIWDTRS-NTTSKPSHLVDA---HTAEVNCLSFNPYSEFILATGSAD 297
Query: 290 GMVRVWD 296
V +WD
Sbjct: 298 KTVALWD 304
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 24/226 (10%)
Query: 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSED 143
+A S +I D WE++ W AH ++ + ++ E G + S S D
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDS-----WRAHDSSIVAIDWASPEYGRIIASASYD 80
Query: 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203
V++W EEC +R + L + + +L + G+ + D ++
Sbjct: 81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLK--LACLGNDGILRL 138
Query: 204 WSLLKGRLLRNIVFPSVIDAIALDPAEH------VFYAGSRDGSIYIAALNAESPSTSSY 257
+ L+ LR+ S +++ PA H + + SR +A E
Sbjct: 139 YDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQR 198
Query: 258 G----MHIIGSLSDHSKAVTCLAYSTG-----DLLISGSEDGMVRV 294
G +H+ L H + ++++ L+ +G +DG +R+
Sbjct: 199 GKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 18/127 (14%)
Query: 184 GYG-----GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI----DAIALDPAEHVFY 234
GYG +S ++SAS+D T +W + G IV I A+ D A H+ +
Sbjct: 182 GYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLH 241
Query: 235 A---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS--TGDLLISGSED 289
GS + + S +T+S H++ + H+ V CL+++ + +L +GS D
Sbjct: 242 ESLFGSVADDQKLMIWDTRS-NTTSKPSHLVDA---HTAEVNCLSFNPYSEFILATGSAD 297
Query: 290 GMVRVWD 296
V +WD
Sbjct: 298 KTVALWD 304
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 73 VEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVA-SGRLLKK-WHAHYRAVTC 127
+EV S P + I ++ + G ++ G + D+ WEV SG+ + K H V
Sbjct: 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLD 91
Query: 128 LVFSEDGSFLISGSEDGCVRIWSL 151
+ +S+DGS + + S D ++W L
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDL 115
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 124 AVTCLVFSED---GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITD 180
++ CL FS G+FLI+GS VR W E Q + + HT + D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCW---------EVQDSGQTIPKAQQMHTGPVLD 91
Query: 181 IVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR 213
+ G + + +AS D+T K+W L + ++
Sbjct: 92 VCWSDDG--SKVFTASCDKTAKMWDLSSNQAIQ 122
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF-SEDGSFLISGSEDGCV 146
+N+ +A G G I + + + +K + H A+ L F D + L+S S+D +
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 147 RIW-----SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
R+W +L+ +F E R L Y + I+S D +
Sbjct: 177 RLWNIQTDTLVAIFGGVEGHRDEVL---------------SADYDLLGEKIMSCGMDHSL 221
Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
K+W + R++ I E Y ++ +I+ P S+ +
Sbjct: 222 KLWRINSKRMMNAI-------------KESYDYNPNKTNRPFISQ-KIHFPDFSTRDI-- 265
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
H V C+ + GDL++S S + + W P
Sbjct: 266 ------HRNYVDCVRW-LGDLILSKSCENAIVCWKP 294
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMV 292
AGSR G I I +P T H +G H A+ L + D LL+S S+D +
Sbjct: 127 AGSR-GIIRII-----NPITMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 293 RVWDPITHNIVRMFRLAKGPVNNIL 317
R+W+ T +V +F +G + +L
Sbjct: 177 RLWNIQTDTLVAIFGGVEGHRDEVL 201
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCV 146
+N+ +A G G I + + + +K + H A+ L F D + L+S S+D +
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 147 RIW-----SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
R+W +L+ +F E R L Y + I+S D +
Sbjct: 136 RLWNIQTDTLVAIFGGVEGHRDEVL---------------SADYDLLGEKIMSCGMDHSL 180
Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
K+W + R++ I E Y ++ +I+ P S+ +
Sbjct: 181 KLWRINSKRMMNAI-------------KESYDYNPNKTNRPFISQ-KIHFPDFSTRDI-- 224
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
H V C+ + GDL++S S + + W P
Sbjct: 225 ------HRNYVDCVRW-LGDLILSKSCENAIVCWKP 253
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMV 292
AGSR G I I +P T H +G H A+ L + D LL+S S+D +
Sbjct: 86 AGSR-GIIRII-----NPITMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 293 RVWDPITHNIVRMFRLAKGPVNNIL 317
R+W+ T +V +F +G + +L
Sbjct: 136 RLWNIQTDTLVAIFGGVEGHRDEVL 160
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 104 IYMWEVASGRLLKKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162
I +W+ + +++K + H V L +DG F IS S DG +++
Sbjct: 167 IKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHF-ISCSNDGLIKL-----------VDX 212
Query: 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV 220
+ L ++ GH + I + G IVS EDRT ++WS G L + I P++
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLLPNG---DIVSCGEDRTVRIWSKENGSLKQVITLPAI 267
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCV 146
+N+ +A G G I + + + +K + H A+ L F D + L+S S+D +
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 147 RIW-----SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
R+W +L+ +F E R L Y + I+S D +
Sbjct: 141 RLWNIQTDTLVAIFGGVEGHRDEVL---------------SADYDLLGEKIMSCGMDHSL 185
Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
K+W + R++ I E Y ++ +I+ P S+ +
Sbjct: 186 KLWRINSKRMMNAI-------------KESYDYNPNKTNRPFISQ-KIHFPDFSTRDI-- 229
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
H V C+ + GDL++S S + + W P
Sbjct: 230 ------HRNYVDCVRW-LGDLILSKSCENAIVCWKP 258
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMV 292
AGSR G I I +P T H +G H A+ L + D LL+S S+D +
Sbjct: 91 AGSR-GIIRII-----NPITMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 293 RVWDPITHNIVRMFRLAKGPVNNIL 317
R+W+ T +V +F +G + +L
Sbjct: 141 RLWNIQTDTLVAIFGGVEGHRDEVL 165
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCV 146
+N+ +A G G I + + + +K + H A+ L F D + L+S S+D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 147 RIW-----SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
R+W +L+ +F E R L Y + I+S D +
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVL---------------SADYDLLGEKIMSCGMDHSL 184
Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
K+W + R++ I E Y ++ +I+ P S+ +
Sbjct: 185 KLWRINSKRMMNAI-------------KESYDYNPNKTNRPFISQ-KIHFPDFSTRDI-- 228
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
H V C+ + GDL++S S + + W P
Sbjct: 229 ------HRNYVDCVRW-LGDLILSKSCENAIVCWKP 257
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMV 292
AGSR G I I +P T H +G H A+ L + D LL+S S+D +
Sbjct: 90 AGSR-GIIRII-----NPITMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 293 RVWDPITHNIVRMFRLAKGPVNNIL 317
R+W+ T +V +F +G + +L
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVL 164
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 44/216 (20%)
Query: 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCV 146
+N+ +A G G I + + + +K + H A+ L F D + L+S S+D +
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 147 RIW-----SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201
R+W +L+ +F E R L Y + I+S D +
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVL---------------SADYDLLGEKIMSCGMDHSL 184
Query: 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261
K+W + R++ I E Y ++ +I+ P S+ +
Sbjct: 185 KLWRINSKRMMNAI-------------KESYDYNPNKTNRPFISQ-KIHFPDFSTRDI-- 228
Query: 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297
H V C+ + GDL++S S + + W P
Sbjct: 229 ------HRNYVDCVRW-LGDLILSKSCENAIVCWKP 257
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGD--LLISGSEDGMV 292
AGSR G I I +P T H +G H A+ L + D LL+S S+D +
Sbjct: 90 AGSR-GIIRII-----NPITMQCIKHYVG----HGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 293 RVWDPITHNIVRMFRLAKGPVNNIL 317
R+W+ T +V +F +G + +L
Sbjct: 140 RLWNIQTDTLVAIFGGVEGHRDEVL 164
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149
I ++ V SG + HY+ V C VF + L SGS D + W
Sbjct: 316 IAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 29/177 (16%)
Query: 133 DGSFLISGSEDGCVRIWSL--------LTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184
+G +++SG DG + ++ L T C R H +H ++ T++
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGR-DHPDVHRYSVETVQW------ 107
Query: 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP--AEHVFYA-GSRDGS 241
Y + S+S D+T KVW + F + + + P +H A G+R
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167
Query: 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296
+ + L + S S HI L H + + +++S +L + S D V++WD
Sbjct: 168 VQLCDLKSGSCS------HI---LQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 35/207 (16%)
Query: 11 ADTGIGCWDLESGAEQLRYKSCASPP--HGLACVG----QRFL---ASSQLREQPSASSG 61
+D I C+D +SG E L+Y P G+ + Q+F A + +R +S
Sbjct: 227 SDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 285
Query: 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
+ W+ K Q+ + + + A +G I+ G + +E+ +LK H
Sbjct: 286 CVQKWTLDKQQLGNQQVG------VVATGNGRIISLS-LDGTLNFYELGHDEVLKTISGH 338
Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWS----------LLTVFEECESQRASHLYLHSF 171
+ +T L + LISGS DG + WS L+ + ++Q S +
Sbjct: 339 NKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD- 393
Query: 172 TGHTLRITDIVIGYGGVSATIVSASED 198
TL++ I G + SA+ D
Sbjct: 394 ---TLKVNGITKHEFGSQPKVASANND 417
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 95 IAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
+A G +I+++ V +++K +AH V L++ E S L+S D C++ W+++
Sbjct: 556 VATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNVV 613
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSA 195
++G D V+IW + S +++ + GH+ + D+ + + + S
Sbjct: 173 FVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 196 SEDRTCKVWSL------LKGRLLRNIVFPSVI 221
S+DRTC +W+ K LL+ FP V+
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSA 195
++G D V+IW S +++ + GH+ + D+ + + + S
Sbjct: 173 FVTGGADNLVKIWKY-------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV 225
Query: 196 SEDRTCKVWSL------LKGRLLRNIVFPSVI 221
S+DRTC +W+ K LL+ FP V+
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSA 195
++G D V+IW + S +++ + GH+ + D+ + + + S
Sbjct: 173 FVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 225
Query: 196 SEDRTCKVWSL------LKGRLLRNIVFPSVI 221
S+DRTC +W+ K LL+ FP V+
Sbjct: 226 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSA 195
++G D V+IW S +++ + GH+ + D+ + + + S
Sbjct: 175 FVTGGADNLVKIWKY-------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV 227
Query: 196 SEDRTCKVWSL------LKGRLLRNIVFPSVI 221
S+DRTC +W+ K LL+ FP V+
Sbjct: 228 SQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 24/97 (24%)
Query: 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV--- 193
++G D V+IW S +++ + GH+ + D+ S T++
Sbjct: 173 FVTGGADNLVKIWKY-------NSDAQTYVLESTLEGHSDWVRDVAW-----SPTVLLRS 220
Query: 194 ---SASEDRTCKVWSL------LKGRLLRNIVFPSVI 221
S S+DRTC +W+ K LL+ FP V+
Sbjct: 221 YXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 257
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 83/207 (40%), Gaps = 35/207 (16%)
Query: 11 ADTGIGCWDLESGAEQLRYKSCASPP--HGLACVG----QRFL---ASSQLREQPSASSG 61
+D I C+D +SG E L+Y P G+ + Q+F A + +R +S
Sbjct: 227 SDRKISCFDGKSG-EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK 285
Query: 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121
+ W+ K Q+ + + + A +G I+ G + +E+ +LK H
Sbjct: 286 CVQKWTLDKQQLGNQQVG------VVATGNGRIISLS-LDGTLNFYELGHDEVLKTISGH 338
Query: 122 YRAVTCLVFSEDGSFLISGSEDGCVRIW----------SLLTVFEECESQRASHLYLHSF 171
+ +T L + LISGS DG + W +L+ + ++Q S +
Sbjct: 339 NKGITALTVNP----LISGSYDGRIXEWSSSSXHQDHSNLIVSLDNSKAQEYSSISWDD- 393
Query: 172 TGHTLRITDIVIGYGGVSATIVSASED 198
TL++ I G + SA+ D
Sbjct: 394 ---TLKVNGITKHEFGSQPKVASANND 417
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 95 IAGGGQSGDIYMWEVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152
+A G +I+++ V +++K +AH V L++ E S L+S D C++ W+++
Sbjct: 556 VATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNVV 613
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 22/129 (17%)
Query: 184 GYG-----GVSATIVSASEDRTCKVWSL----LKGRLLRNIVFPSVIDAIALDPAEH--- 231
GYG +S ++SAS+D T +W + +G+++ + A+ D + H
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLH 239
Query: 232 --VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS--TGDLLISGS 287
+F + + D + I + + S S+ S+ H+ V CL+++ + +L +GS
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSH------SVDAHTAEVNCLSFNPYSEFILATGS 293
Query: 288 EDGMVRVWD 296
D V +WD
Sbjct: 294 ADKTVALWD 302
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 93/247 (37%), Gaps = 55/247 (22%)
Query: 81 EPIKPIAANSHGTYIAGGGQSGDIYMW--EVASGR-----LLKKWHAHYRAVTCLVFSED 133
+ I+ +A H + +A G + +W E ++ R LL H V + +S D
Sbjct: 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND 118
Query: 134 GSFLISGSEDGCVRIWSLLTVFEECE--------SQRASHLYLHSFTGHTLRITDIVIGY 185
G +L + S D V IW EE E SQ H+ H
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP--------------- 163
Query: 186 GGVSATIVSASEDRTCKVW----------SLLKGRLLRNIVFPSVIDAIALDPAEHVFY- 234
A + S+S D T ++W ++L G V+ S D E VF
Sbjct: 164 --SEALLASSSYDDTVRIWKDYDDDWECVAVLNGH--EGTVWSS-----DFDKTEGVFRL 214
Query: 235 -AGSRDGSIYI-AALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGM 291
+GS D ++ + + + + I L D H + V +A+ L+ S DG+
Sbjct: 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAI--LPDVHKRQVYNVAWGFNGLIASVGADGV 272
Query: 292 VRVWDPI 298
+ V++ +
Sbjct: 273 LAVYEEV 279
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIV- 182
V +V + + S L G DGC+ + + +EC + ++ T G+ L ++
Sbjct: 76 VDAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQSCKTGKAKITGGYRLPAKYVIH 135
Query: 183 ----IGYGGVSATIVSASEDRTCKVWS--LLKGRLLRNIVFPSVIDAIALDPAE 230
I YG SA+ A+E R+C + S LL LR++ FP + + P E
Sbjct: 136 TVGPIAYGEPSAS--QAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCE 187
>pdb|4DOI|A Chain A, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
pdb|4DOI|B Chain B, Crystal Structure Of Arabidopsis Thaliana Chalcone
Isomerase At3g55120 (Atchi)
Length = 246
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTC 201
+ CV IW L ++ +CE+ +A +L F T + I+ + V+ S+D +
Sbjct: 123 ENCVAIWKQLGLYTDCEA-KAVEKFLEIFKEETFPPGSSILFALSPTGSLTVAFSKDDSI 181
Query: 202 KVW--SLLKGRLLRNIVFPSVIDAIALDP 228
++++ +LL V S+I + P
Sbjct: 182 PETGIAVIENKLLAEAVLESIIGKNGVSP 210
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 380 ISHRTIENHIKELQQQGSSAATEMEVERLKRE------CNRTLQMVQQWKKMYENLHEFC 433
+ H+ ++ I ELQ Q +EV + R +R + + + +NL +
Sbjct: 657 VIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPL 716
Query: 434 VNELLDGDQVDGSKRNV 450
NELL G VDG + V
Sbjct: 717 ANELLFGSLVDGGQVTV 733
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,990,884
Number of Sequences: 62578
Number of extensions: 583651
Number of successful extensions: 2294
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 412
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)