Query 012996
Match_columns 451
No_of_seqs 870 out of 3754
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 08:28:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012996.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012996hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.7E-54 1E-58 355.5 26.9 308 3-338 128-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 5E-52 1.1E-56 343.5 22.8 292 32-348 111-447 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.1E-50 1.3E-54 335.2 21.5 280 34-338 173-458 (459)
4 KOG0646 WD40 repeat protein [G 100.0 1.2E-45 2.7E-50 313.5 34.3 431 1-440 5-472 (476)
5 KOG0286 G-protein beta subunit 100.0 3.5E-45 7.6E-50 292.8 29.5 281 32-338 51-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 9.4E-46 2E-50 310.2 20.0 265 3-296 188-458 (459)
7 KOG0315 G-protein beta subunit 100.0 6.1E-43 1.3E-47 273.7 27.4 275 51-344 11-292 (311)
8 KOG0315 G-protein beta subunit 100.0 3.6E-42 7.7E-47 269.4 31.3 287 3-319 11-309 (311)
9 KOG0319 WD40-repeat-containing 100.0 2.1E-42 4.5E-47 309.3 29.6 327 3-353 118-590 (775)
10 KOG0279 G protein beta subunit 100.0 8.7E-42 1.9E-46 271.6 27.5 284 34-340 13-313 (315)
11 KOG0284 Polyadenylation factor 100.0 7.9E-44 1.7E-48 297.3 15.6 279 37-340 97-380 (464)
12 KOG0273 Beta-transducin family 100.0 1.9E-41 4.2E-46 288.1 26.3 310 3-340 192-523 (524)
13 KOG0273 Beta-transducin family 100.0 2.4E-41 5.2E-46 287.5 25.6 287 35-348 177-490 (524)
14 KOG0318 WD40 repeat stress pro 100.0 2.3E-40 5E-45 285.3 31.6 324 3-341 72-561 (603)
15 KOG0286 G-protein beta subunit 100.0 1.4E-40 2.9E-45 266.5 27.7 264 3-296 68-343 (343)
16 KOG0296 Angio-associated migra 100.0 1.2E-39 2.6E-44 268.8 27.7 308 3-340 77-398 (399)
17 KOG0291 WD40-repeat-containing 100.0 2.2E-39 4.8E-44 290.5 31.6 316 3-346 278-618 (893)
18 KOG0279 G protein beta subunit 100.0 2.8E-39 6E-44 257.4 28.0 272 4-298 30-313 (315)
19 KOG0263 Transcription initiati 100.0 8.8E-40 1.9E-44 295.3 27.0 268 36-328 378-703 (707)
20 KOG0285 Pleiotropic regulator 100.0 7.5E-40 1.6E-44 269.2 23.0 284 32-341 147-440 (460)
21 KOG0263 Transcription initiati 100.0 1.7E-40 3.8E-45 299.9 21.1 242 80-343 378-652 (707)
22 KOG0295 WD40 repeat-containing 100.0 6.8E-40 1.5E-44 270.0 21.8 281 34-339 106-405 (406)
23 KOG0645 WD40 repeat protein [G 100.0 1.4E-38 3E-43 252.3 27.9 284 30-340 8-311 (312)
24 KOG0291 WD40-repeat-containing 100.0 2.3E-38 4.9E-43 284.1 30.9 282 37-344 266-554 (893)
25 KOG0318 WD40 repeat stress pro 100.0 1.2E-37 2.5E-42 268.6 32.8 320 3-340 161-602 (603)
26 KOG0295 WD40 repeat-containing 100.0 5.7E-39 1.2E-43 264.6 22.9 269 2-297 120-405 (406)
27 KOG0319 WD40-repeat-containing 100.0 1E-38 2.2E-43 285.7 25.1 313 11-341 301-620 (775)
28 KOG0293 WD40 repeat-containing 100.0 5.1E-39 1.1E-43 269.0 21.7 286 30-341 218-514 (519)
29 KOG0266 WD40 repeat-containing 100.0 7.2E-38 1.6E-42 290.6 28.5 281 35-340 158-454 (456)
30 cd00200 WD40 WD40 domain, foun 100.0 6.9E-37 1.5E-41 271.5 32.6 280 34-338 7-289 (289)
31 KOG0265 U5 snRNP-specific prot 100.0 2.2E-37 4.8E-42 249.0 25.4 284 32-337 43-335 (338)
32 KOG0645 WD40 repeat protein [G 100.0 4.7E-37 1E-41 243.7 26.5 272 3-298 28-311 (312)
33 KOG0284 Polyadenylation factor 100.0 7.1E-39 1.5E-43 267.8 15.3 267 3-297 109-379 (464)
34 KOG0281 Beta-TrCP (transducin 100.0 2.2E-38 4.9E-43 259.7 17.0 283 27-344 188-481 (499)
35 PLN00181 protein SPA1-RELATED; 100.0 1.8E-36 3.9E-41 302.2 34.4 307 12-339 457-792 (793)
36 KOG0276 Vesicle coat complex C 100.0 1.8E-37 3.8E-42 272.8 22.7 279 35-336 12-295 (794)
37 KOG0285 Pleiotropic regulator 100.0 2.2E-37 4.8E-42 254.7 21.8 255 77-355 148-404 (460)
38 KOG0316 Conserved WD40 repeat- 100.0 8.7E-37 1.9E-41 237.3 23.4 279 33-338 14-297 (307)
39 KOG0282 mRNA splicing factor [ 100.0 6.5E-38 1.4E-42 267.7 18.2 284 32-338 210-503 (503)
40 KOG0313 Microtubule binding pr 100.0 7.4E-37 1.6E-41 253.5 23.0 291 35-340 104-418 (423)
41 KOG0275 Conserved WD40 repeat- 100.0 1.3E-37 2.8E-42 253.1 16.7 274 39-338 216-507 (508)
42 KOG0306 WD40-repeat-containing 100.0 3.8E-35 8.2E-40 263.4 33.1 330 3-352 78-634 (888)
43 KOG0306 WD40-repeat-containing 100.0 3.5E-35 7.5E-40 263.6 31.5 319 11-347 342-671 (888)
44 KOG0292 Vesicle coat complex C 100.0 3.8E-36 8.3E-41 274.2 23.1 283 35-341 8-322 (1202)
45 KOG0282 mRNA splicing factor [ 100.0 1.8E-36 3.8E-41 258.9 18.5 266 3-296 228-503 (503)
46 KOG0277 Peroxisomal targeting 100.0 8.8E-36 1.9E-40 234.3 20.5 258 61-339 38-308 (311)
47 KOG0265 U5 snRNP-specific prot 100.0 1.1E-35 2.5E-40 239.2 21.4 261 75-356 42-312 (338)
48 KOG0278 Serine/threonine kinas 100.0 2E-36 4.4E-41 237.4 15.8 288 31-345 9-302 (334)
49 KOG0281 Beta-TrCP (transducin 100.0 1.6E-36 3.4E-41 249.0 15.2 269 4-303 209-482 (499)
50 KOG0310 Conserved WD40 repeat- 100.0 3.8E-34 8.3E-39 245.0 27.3 282 35-342 25-311 (487)
51 KOG0266 WD40 repeat-containing 100.0 2.7E-34 5.9E-39 266.7 27.9 269 3-298 172-454 (456)
52 KOG0296 Angio-associated migra 100.0 2.2E-34 4.8E-39 237.8 24.0 298 32-348 60-364 (399)
53 KOG1408 WD40 repeat protein [F 100.0 4.2E-35 9.1E-40 261.7 20.6 314 11-342 344-715 (1080)
54 KOG0276 Vesicle coat complex C 100.0 1E-34 2.3E-39 255.4 20.7 246 79-346 12-263 (794)
55 cd00200 WD40 WD40 domain, foun 100.0 4.4E-33 9.5E-38 247.1 31.2 265 3-296 22-289 (289)
56 KOG0292 Vesicle coat complex C 100.0 2.9E-34 6.3E-39 262.0 21.7 256 80-348 9-288 (1202)
57 PTZ00421 coronin; Provisional 100.0 3.6E-32 7.8E-37 251.2 35.1 272 46-341 28-332 (493)
58 KOG0293 WD40 repeat-containing 100.0 7.5E-34 1.6E-38 238.2 21.2 269 3-299 237-514 (519)
59 KOG0283 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 260.5 20.2 251 78-343 265-579 (712)
60 KOG0305 Anaphase promoting com 100.0 5.4E-33 1.2E-37 247.2 26.3 270 46-342 185-463 (484)
61 KOG0316 Conserved WD40 repeat- 100.0 1.7E-33 3.7E-38 219.0 20.2 246 74-345 11-262 (307)
62 PLN00181 protein SPA1-RELATED; 100.0 1.1E-32 2.5E-37 275.0 31.6 260 61-342 458-740 (793)
63 KOG0288 WD40 repeat protein Ti 100.0 5.4E-34 1.2E-38 239.1 18.4 276 35-338 174-459 (459)
64 KOG0643 Translation initiation 100.0 3.8E-33 8.1E-38 221.1 19.5 289 33-341 7-318 (327)
65 KOG0313 Microtubule binding pr 100.0 1.8E-32 4E-37 227.5 24.4 268 3-298 116-418 (423)
66 KOG0275 Conserved WD40 repeat- 100.0 1.6E-33 3.5E-38 229.4 17.3 268 3-296 226-507 (508)
67 KOG0973 Histone transcription 100.0 8.8E-33 1.9E-37 258.7 23.9 284 38-346 15-361 (942)
68 KOG0268 Sof1-like rRNA process 100.0 1.7E-33 3.8E-38 232.2 16.2 281 33-342 63-347 (433)
69 KOG0305 Anaphase promoting com 100.0 3.6E-32 7.7E-37 242.0 25.5 267 3-300 189-463 (484)
70 KOG0299 U3 snoRNP-associated p 100.0 3.2E-32 6.9E-37 231.6 23.9 291 30-338 136-454 (479)
71 KOG0647 mRNA export protein (c 100.0 5.4E-32 1.2E-36 218.3 23.7 280 28-328 19-311 (347)
72 KOG0641 WD40 repeat protein [G 100.0 8.7E-31 1.9E-35 203.0 28.7 280 35-340 31-349 (350)
73 KOG1407 WD40 repeat protein [F 100.0 1.3E-31 2.7E-36 211.8 24.3 271 34-332 18-294 (313)
74 KOG0294 WD40 repeat-containing 100.0 6E-32 1.3E-36 219.3 23.0 239 78-342 41-283 (362)
75 KOG0643 Translation initiation 100.0 1.4E-31 3E-36 212.3 24.3 277 3-298 23-317 (327)
76 PTZ00420 coronin; Provisional 100.0 9.6E-31 2.1E-35 242.7 33.2 274 56-355 50-349 (568)
77 KOG0277 Peroxisomal targeting 100.0 2E-32 4.2E-37 215.6 18.2 264 11-297 36-308 (311)
78 KOG1539 WD repeat protein [Gen 100.0 1.8E-31 3.9E-36 242.6 26.9 318 4-340 174-648 (910)
79 KOG0274 Cdc4 and related F-box 100.0 1.2E-31 2.5E-36 248.0 26.0 279 36-348 208-490 (537)
80 KOG0278 Serine/threonine kinas 100.0 1.2E-32 2.6E-37 216.3 16.0 270 3-303 30-302 (334)
81 KOG1036 Mitotic spindle checkp 100.0 2.6E-31 5.6E-36 215.2 24.0 275 34-329 11-293 (323)
82 KOG0289 mRNA splicing factor [ 100.0 3E-31 6.5E-36 224.0 25.3 268 3-297 232-505 (506)
83 KOG0772 Uncharacterized conser 100.0 7.4E-32 1.6E-36 232.4 20.6 285 35-338 166-485 (641)
84 KOG0640 mRNA cleavage stimulat 100.0 6.9E-32 1.5E-36 218.5 18.3 285 34-340 110-426 (430)
85 KOG0274 Cdc4 and related F-box 100.0 9.2E-31 2E-35 242.1 26.5 270 3-309 219-493 (537)
86 KOG1407 WD40 repeat protein [F 100.0 4.5E-31 9.9E-36 208.7 20.6 245 77-344 17-265 (313)
87 KOG0289 mRNA splicing factor [ 100.0 2.4E-30 5.3E-35 218.5 24.8 281 36-339 219-505 (506)
88 KOG1446 Histone H3 (Lys4) meth 100.0 3E-29 6.5E-34 204.3 29.4 276 36-340 14-303 (311)
89 KOG0639 Transducin-like enhanc 100.0 2.6E-31 5.5E-36 228.5 18.2 277 35-339 418-703 (705)
90 KOG0264 Nucleosome remodeling 100.0 7.5E-31 1.6E-35 223.2 20.4 254 75-341 119-405 (422)
91 KOG0300 WD40 repeat-containing 100.0 1.3E-30 2.8E-35 211.9 19.4 273 3-300 161-478 (481)
92 KOG1332 Vesicle coat complex C 100.0 6.3E-31 1.4E-35 205.9 16.6 250 76-341 7-287 (299)
93 KOG1446 Histone H3 (Lys4) meth 100.0 4E-29 8.6E-34 203.6 27.1 254 79-350 13-272 (311)
94 PTZ00420 coronin; Provisional 100.0 2.4E-29 5.1E-34 233.5 29.3 232 98-342 50-295 (568)
95 KOG0308 Conserved WD40 repeat- 100.0 1.6E-30 3.5E-35 230.2 19.8 283 48-343 35-330 (735)
96 KOG0294 WD40 repeat-containing 100.0 4.6E-29 9.9E-34 202.6 26.3 267 3-300 2-283 (362)
97 PTZ00421 coronin; Provisional 100.0 2.3E-29 4.9E-34 232.7 27.7 250 81-344 21-294 (493)
98 KOG0301 Phospholipase A2-activ 100.0 1.7E-29 3.8E-34 225.3 24.8 280 24-343 5-291 (745)
99 KOG0647 mRNA export protein (c 100.0 2E-29 4.4E-34 203.5 22.6 248 74-342 21-283 (347)
100 KOG0288 WD40 repeat protein Ti 100.0 1E-30 2.2E-35 219.4 13.2 247 77-348 172-425 (459)
101 KOG2106 Uncharacterized conser 100.0 5.3E-28 1.2E-32 208.2 29.9 312 5-340 172-521 (626)
102 KOG2445 Nuclear pore complex c 100.0 1.3E-28 2.9E-33 199.3 24.4 259 75-341 8-319 (361)
103 KOG0283 WD40 repeat-containing 100.0 2.7E-29 5.8E-34 229.6 23.0 240 34-301 265-579 (712)
104 KOG0300 WD40 repeat-containing 100.0 1.4E-29 3.1E-34 205.9 18.6 259 77-346 145-434 (481)
105 KOG0299 U3 snoRNP-associated p 100.0 5.9E-29 1.3E-33 211.8 21.5 247 73-342 135-412 (479)
106 KOG1036 Mitotic spindle checkp 100.0 2.2E-28 4.7E-33 198.3 23.7 252 75-351 8-273 (323)
107 KOG0308 Conserved WD40 repeat- 100.0 1.1E-29 2.3E-34 225.0 17.4 232 90-341 35-286 (735)
108 KOG0640 mRNA cleavage stimulat 100.0 5.5E-29 1.2E-33 201.8 19.6 270 3-297 125-425 (430)
109 KOG0310 Conserved WD40 repeat- 100.0 6.3E-29 1.4E-33 213.2 20.0 242 79-343 25-271 (487)
110 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 6.5E-27 1.4E-31 209.2 34.0 286 2-320 1-300 (300)
111 KOG0268 Sof1-like rRNA process 100.0 1.3E-29 2.8E-34 209.4 14.4 268 4-305 81-352 (433)
112 KOG2055 WD40 repeat protein [G 100.0 5E-28 1.1E-32 206.2 23.0 286 35-340 212-512 (514)
113 KOG1539 WD repeat protein [Gen 100.0 5E-27 1.1E-31 213.9 30.4 314 4-345 126-611 (910)
114 KOG4378 Nuclear protein COP1 [ 100.0 6.4E-28 1.4E-32 207.4 22.2 295 1-322 2-305 (673)
115 KOG0772 Uncharacterized conser 100.0 2.8E-28 6E-33 210.5 19.6 269 3-296 180-485 (641)
116 KOG0301 Phospholipase A2-activ 100.0 2.6E-27 5.6E-32 211.6 24.7 259 3-298 26-288 (745)
117 KOG1408 WD40 repeat protein [F 100.0 8.9E-28 1.9E-32 215.2 21.6 276 3-299 393-714 (1080)
118 KOG0641 WD40 repeat protein [G 100.0 6.2E-26 1.3E-30 176.1 28.3 271 4-298 46-349 (350)
119 KOG0646 WD40 repeat protein [G 100.0 1.4E-26 2.9E-31 197.9 27.0 271 55-349 12-316 (476)
120 KOG0264 Nucleosome remodeling 100.0 1.4E-27 3.1E-32 203.4 20.8 252 35-298 123-404 (422)
121 KOG0267 Microtubule severing p 100.0 2.9E-29 6.3E-34 224.9 10.7 246 61-333 14-261 (825)
122 KOG0973 Histone transcription 100.0 1.8E-27 4E-32 223.3 22.7 263 77-350 10-322 (942)
123 KOG0321 WD40 repeat-containing 100.0 4.2E-27 9.1E-32 208.3 22.4 321 1-340 63-445 (720)
124 KOG0269 WD40 repeat-containing 100.0 5.5E-28 1.2E-32 218.4 16.6 275 46-342 47-342 (839)
125 KOG1063 RNA polymerase II elon 100.0 2.3E-26 4.9E-31 205.5 24.8 319 2-342 206-650 (764)
126 KOG4283 Transcription-coupled 100.0 6.4E-26 1.4E-30 182.8 24.5 291 3-339 57-364 (397)
127 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 1.7E-25 3.7E-30 200.0 30.1 270 52-347 3-286 (300)
128 KOG1445 Tumor-specific antigen 100.0 8.5E-27 1.9E-31 206.3 20.9 121 220-342 629-752 (1012)
129 KOG1274 WD40 repeat protein [G 100.0 3.7E-26 8E-31 210.5 25.2 276 34-338 11-298 (933)
130 KOG0639 Transducin-like enhanc 100.0 6.2E-27 1.3E-31 201.6 18.7 264 4-297 433-703 (705)
131 KOG2096 WD40 repeat protein [G 99.9 9.6E-26 2.1E-30 183.7 22.6 284 33-337 83-399 (420)
132 KOG1332 Vesicle coat complex C 99.9 2E-26 4.4E-31 180.8 17.8 232 3-250 24-288 (299)
133 KOG1273 WD40 repeat protein [G 99.9 7.9E-26 1.7E-30 183.9 21.7 287 39-341 26-323 (405)
134 KOG0269 WD40 repeat-containing 99.9 1.6E-26 3.4E-31 209.0 18.7 235 46-301 95-343 (839)
135 KOG2106 Uncharacterized conser 99.9 7.1E-25 1.5E-29 189.1 27.4 294 14-342 135-479 (626)
136 KOG0267 Microtubule severing p 99.9 3.9E-27 8.4E-32 211.4 13.3 245 12-290 13-260 (825)
137 KOG2048 WD40 repeat protein [G 99.9 5E-25 1.1E-29 196.6 26.2 280 34-340 23-319 (691)
138 KOG0307 Vesicle coat complex C 99.9 1E-25 2.2E-30 212.7 22.5 247 79-343 63-330 (1049)
139 KOG4283 Transcription-coupled 99.9 5.8E-26 1.3E-30 183.0 17.9 216 118-343 39-279 (397)
140 KOG1274 WD40 repeat protein [G 99.9 3.7E-25 8E-30 204.0 25.3 254 75-344 8-266 (933)
141 KOG0270 WD40 repeat-containing 99.9 1.1E-25 2.4E-30 191.2 19.7 277 46-342 133-451 (463)
142 KOG0302 Ribosome Assembly prot 99.9 1.3E-25 2.9E-30 186.8 19.6 241 79-335 150-434 (440)
143 KOG2048 WD40 repeat protein [G 99.9 2.5E-24 5.4E-29 192.2 28.4 278 3-299 38-320 (691)
144 KOG2445 Nuclear pore complex c 99.9 3E-24 6.6E-29 174.2 25.8 276 34-319 11-341 (361)
145 KOG0650 WD40 repeat nucleolar 99.9 2.6E-25 5.6E-30 195.7 20.7 279 34-338 398-733 (733)
146 KOG0321 WD40 repeat-containing 99.9 3.9E-25 8.5E-30 195.9 20.8 285 49-342 62-393 (720)
147 KOG1063 RNA polymerase II elon 99.9 2.3E-24 5.1E-29 192.8 23.9 328 4-340 281-699 (764)
148 KOG2919 Guanine nucleotide-bin 99.9 1.9E-24 4.1E-29 176.6 21.2 273 45-331 56-361 (406)
149 KOG4378 Nuclear protein COP1 [ 99.9 6.3E-25 1.4E-29 189.1 19.1 255 3-284 48-308 (673)
150 KOG2096 WD40 repeat protein [G 99.9 2.3E-24 4.9E-29 175.8 21.3 272 3-296 99-400 (420)
151 KOG4328 WD40 protein [Function 99.9 3.5E-24 7.7E-29 182.7 21.7 289 35-341 185-496 (498)
152 KOG1188 WD40 repeat protein [G 99.9 3.2E-24 6.9E-29 176.6 19.6 280 1-297 39-345 (376)
153 KOG2055 WD40 repeat protein [G 99.9 3.1E-24 6.7E-29 183.3 19.6 267 4-298 227-512 (514)
154 KOG1273 WD40 repeat protein [G 99.9 3.8E-24 8.3E-29 174.2 18.2 243 83-348 26-288 (405)
155 KOG0302 Ribosome Assembly prot 99.9 2.3E-24 5E-29 179.5 16.9 215 119-341 148-379 (440)
156 KOG0650 WD40 repeat nucleolar 99.9 8.7E-24 1.9E-28 186.1 21.4 272 3-295 413-732 (733)
157 KOG0270 WD40 repeat-containing 99.9 4.6E-24 9.9E-29 181.4 17.4 236 49-304 191-455 (463)
158 KOG1007 WD repeat protein TSSC 99.9 2.6E-23 5.7E-28 167.3 18.8 266 61-341 40-362 (370)
159 KOG4328 WD40 protein [Function 99.9 3.7E-23 8.1E-28 176.5 19.6 252 77-344 183-454 (498)
160 KOG1009 Chromatin assembly com 99.9 6.1E-23 1.3E-27 172.7 20.4 284 37-345 14-377 (434)
161 KOG0642 Cell-cycle nuclear pro 99.9 8.1E-24 1.8E-28 185.3 14.6 262 78-345 292-566 (577)
162 KOG1034 Transcriptional repres 99.9 1.4E-22 3E-27 166.1 18.6 281 3-298 56-383 (385)
163 KOG1538 Uncharacterized conser 99.9 4E-22 8.7E-27 178.0 20.6 263 2-298 26-293 (1081)
164 KOG1587 Cytoplasmic dynein int 99.9 9.7E-22 2.1E-26 180.8 23.8 272 61-341 222-517 (555)
165 KOG1034 Transcriptional repres 99.9 1.9E-22 4.2E-27 165.3 16.7 288 34-340 36-383 (385)
166 KOG1538 Uncharacterized conser 99.9 8.6E-22 1.9E-26 175.9 20.5 271 38-344 14-297 (1081)
167 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-19 3.5E-24 170.0 37.2 315 4-348 79-408 (466)
168 KOG0307 Vesicle coat complex C 99.9 2.8E-22 6.1E-27 189.7 15.5 234 3-251 81-330 (1049)
169 KOG1188 WD40 repeat protein [G 99.9 5.3E-22 1.2E-26 163.6 15.0 230 93-339 41-345 (376)
170 KOG4227 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 158.7 21.6 287 34-341 54-388 (609)
171 KOG2919 Guanine nucleotide-bin 99.9 1.8E-21 3.9E-26 159.3 15.8 222 3-239 124-361 (406)
172 COG2319 FOG: WD40 repeat [Gene 99.9 3.9E-19 8.4E-24 167.4 33.4 286 34-343 63-362 (466)
173 KOG1517 Guanine nucleotide bin 99.9 1.8E-20 3.8E-25 175.8 22.9 283 2-301 1076-1384(1387)
174 KOG1445 Tumor-specific antigen 99.9 4.4E-21 9.6E-26 170.5 17.8 154 178-341 630-799 (1012)
175 KOG0322 G-protein beta subunit 99.9 4.2E-21 9.1E-26 152.8 14.6 255 78-339 12-322 (323)
176 KOG1524 WD40 repeat-containing 99.9 1.6E-20 3.5E-25 163.7 17.7 261 35-336 13-282 (737)
177 KOG1963 WD40 repeat protein [G 99.9 3.5E-19 7.5E-24 164.5 27.4 318 12-341 180-539 (792)
178 KOG0303 Actin-binding protein 99.9 6.3E-20 1.4E-24 154.2 20.2 213 116-343 75-297 (472)
179 PRK11028 6-phosphogluconolacto 99.9 7.7E-19 1.7E-23 158.5 28.8 264 60-340 11-304 (330)
180 KOG0303 Actin-binding protein 99.9 2.3E-20 5E-25 156.8 16.9 258 75-356 76-352 (472)
181 KOG2314 Translation initiation 99.9 3.8E-19 8.1E-24 156.0 24.2 352 40-430 214-654 (698)
182 KOG0642 Cell-cycle nuclear pro 99.9 9.2E-21 2E-25 166.3 14.2 254 34-310 292-573 (577)
183 KOG1007 WD repeat protein TSSC 99.9 1.5E-19 3.3E-24 145.8 19.8 273 11-298 38-361 (370)
184 KOG0649 WD40 repeat protein [G 99.9 2.3E-19 5.1E-24 141.3 20.3 251 82-342 12-276 (325)
185 KOG0290 Conserved WD40 repeat- 99.9 1.2E-19 2.6E-24 146.6 18.6 273 35-329 43-355 (364)
186 PRK11028 6-phosphogluconolacto 99.8 3E-18 6.5E-23 154.6 29.4 273 5-298 5-304 (330)
187 KOG1587 Cytoplasmic dynein int 99.8 3.8E-19 8.2E-24 163.9 23.4 270 12-299 221-517 (555)
188 KOG1517 Guanine nucleotide bin 99.8 2E-19 4.4E-24 168.8 21.4 275 46-342 1072-1383(1387)
189 KOG0644 Uncharacterized conser 99.8 5.5E-21 1.2E-25 174.8 9.4 238 78-341 188-469 (1113)
190 KOG1310 WD40 repeat protein [G 99.8 3.8E-19 8.3E-24 155.7 18.0 213 33-250 47-305 (758)
191 KOG0649 WD40 repeat protein [G 99.8 1.1E-17 2.3E-22 132.0 24.1 264 3-295 23-313 (325)
192 KOG2110 Uncharacterized conser 99.8 4.7E-18 1E-22 142.0 23.4 234 81-343 6-251 (391)
193 KOG0290 Conserved WD40 repeat- 99.8 2.3E-18 5.1E-23 139.2 20.7 239 33-289 93-357 (364)
194 KOG1334 WD40 repeat protein [G 99.8 1.4E-19 3.1E-24 156.1 14.4 299 33-343 139-469 (559)
195 KOG4497 Uncharacterized conser 99.8 1.6E-18 3.4E-23 142.6 19.7 291 3-333 62-425 (447)
196 KOG1009 Chromatin assembly com 99.8 1.4E-18 3E-23 146.8 19.3 286 3-303 27-377 (434)
197 KOG1963 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 158.1 23.4 337 2-344 217-587 (792)
198 PF02239 Cytochrom_D1: Cytochr 99.8 2.6E-17 5.6E-22 147.9 27.4 322 2-345 6-352 (369)
199 KOG2110 Uncharacterized conser 99.8 2.1E-17 4.6E-22 138.1 24.3 300 4-341 19-331 (391)
200 KOG1240 Protein kinase contain 99.8 7.2E-18 1.6E-22 160.9 23.9 304 18-338 1034-1431(1431)
201 KOG1523 Actin-related protein 99.8 6E-18 1.3E-22 138.7 19.7 242 79-331 9-269 (361)
202 KOG0322 G-protein beta subunit 99.8 1.2E-18 2.6E-23 138.9 15.0 253 25-297 6-322 (323)
203 KOG4227 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 141.7 20.0 282 3-297 69-386 (609)
204 KOG1272 WD40-repeat-containing 99.8 2.5E-19 5.4E-24 153.7 11.2 260 46-333 137-402 (545)
205 PRK01742 tolB translocation pr 99.8 7.6E-18 1.7E-22 156.5 22.1 232 61-321 184-426 (429)
206 KOG1524 WD40 repeat-containing 99.8 3.3E-18 7.1E-23 149.5 17.6 207 51-295 76-283 (737)
207 KOG0771 Prolactin regulatory e 99.8 1.1E-18 2.4E-23 148.3 14.2 198 126-341 148-355 (398)
208 KOG1523 Actin-related protein 99.8 1.8E-17 4E-22 135.9 19.3 234 36-289 10-269 (361)
209 PRK01742 tolB translocation pr 99.8 1.2E-17 2.6E-22 155.2 20.0 237 12-279 183-425 (429)
210 KOG0771 Prolactin regulatory e 99.8 6.7E-18 1.5E-22 143.6 16.1 195 84-298 148-354 (398)
211 KOG2321 WD40 repeat protein [G 99.8 9.9E-17 2.1E-21 141.5 23.5 300 13-340 7-343 (703)
212 KOG2315 Predicted translation 99.8 1.1E-16 2.4E-21 141.0 23.4 308 4-345 4-395 (566)
213 KOG1272 WD40-repeat-containing 99.8 3.8E-18 8.3E-23 146.5 13.4 261 4-294 143-405 (545)
214 KOG1240 Protein kinase contain 99.8 1.7E-16 3.7E-21 151.7 23.8 265 66-342 1034-1336(1431)
215 KOG2111 Uncharacterized conser 99.8 2.5E-16 5.4E-21 129.3 21.5 235 82-343 7-259 (346)
216 KOG1310 WD40 repeat protein [G 99.8 9.1E-17 2E-21 141.0 19.5 222 114-346 42-309 (758)
217 KOG4497 Uncharacterized conser 99.8 4.7E-17 1E-21 134.0 16.6 282 46-344 16-395 (447)
218 KOG2139 WD40 repeat protein [G 99.7 1.9E-15 4.2E-20 126.2 23.4 269 4-297 112-430 (445)
219 KOG2394 WD40 protein DMR-N9 [G 99.7 6.2E-16 1.3E-20 135.5 21.4 246 83-346 126-458 (636)
220 KOG0644 Uncharacterized conser 99.7 1.4E-17 2.9E-22 153.0 11.0 255 33-303 187-473 (1113)
221 PRK03629 tolB translocation pr 99.7 3.3E-15 7.2E-20 138.6 26.1 233 61-320 179-427 (429)
222 KOG2139 WD40 repeat protein [G 99.7 1.6E-15 3.6E-20 126.6 20.8 246 39-331 101-366 (445)
223 PRK02889 tolB translocation pr 99.7 5E-15 1.1E-19 137.6 26.1 236 61-321 176-425 (427)
224 KOG1334 WD40 repeat protein [G 99.7 9.4E-17 2E-21 138.9 12.2 259 78-345 140-429 (559)
225 KOG2111 Uncharacterized conser 99.7 3.2E-14 7E-19 117.1 25.9 227 4-251 19-259 (346)
226 KOG2394 WD40 protein DMR-N9 [G 99.7 7.3E-16 1.6E-20 135.1 17.0 220 46-278 131-383 (636)
227 PRK03629 tolB translocation pr 99.7 9.8E-15 2.1E-19 135.5 25.2 235 13-279 179-427 (429)
228 KOG3881 Uncharacterized conser 99.7 3.6E-15 7.8E-20 125.9 19.7 228 80-321 105-342 (412)
229 KOG3881 Uncharacterized conser 99.7 2.1E-15 4.5E-20 127.3 17.9 246 80-344 55-324 (412)
230 PRK04922 tolB translocation pr 99.7 1E-14 2.2E-19 136.0 24.5 233 61-320 184-432 (433)
231 COG5354 Uncharacterized protei 99.7 2E-14 4.3E-19 125.5 23.8 279 37-345 33-400 (561)
232 PF02239 Cytochrom_D1: Cytochr 99.7 6.5E-15 1.4E-19 132.4 21.7 281 4-307 50-356 (369)
233 PRK02889 tolB translocation pr 99.7 1.4E-14 3E-19 134.6 23.1 238 12-279 175-424 (427)
234 PRK04922 tolB translocation pr 99.7 1.9E-14 4.1E-19 134.2 22.9 235 13-279 184-432 (433)
235 PRK05137 tolB translocation pr 99.7 5.8E-14 1.3E-18 131.2 25.9 232 61-320 182-432 (435)
236 PF08662 eIF2A: Eukaryotic tra 99.6 1.6E-14 3.5E-19 118.0 15.6 132 200-345 38-184 (194)
237 PRK05137 tolB translocation pr 99.6 1.6E-13 3.4E-18 128.3 23.9 204 102-331 182-397 (435)
238 KOG2321 WD40 repeat protein [G 99.6 1.8E-13 3.8E-18 121.4 21.4 275 3-299 65-344 (703)
239 TIGR03300 assembly_YfgL outer 99.6 1.5E-12 3.3E-17 119.8 27.8 303 4-337 67-376 (377)
240 COG5354 Uncharacterized protei 99.6 4.2E-12 9.1E-17 111.3 27.1 284 12-332 107-421 (561)
241 PF10282 Lactonase: Lactonase, 99.6 1.8E-11 3.8E-16 110.7 32.6 289 13-318 13-345 (345)
242 PF08662 eIF2A: Eukaryotic tra 99.6 2.3E-13 4.9E-18 111.3 18.3 150 84-250 9-181 (194)
243 COG2706 3-carboxymuconate cycl 99.6 4.7E-11 1E-15 100.9 31.2 301 1-319 1-345 (346)
244 KOG0280 Uncharacterized conser 99.6 4.3E-13 9.4E-18 109.3 18.4 270 12-300 45-335 (339)
245 TIGR02800 propeller_TolB tol-p 99.6 1.6E-12 3.4E-17 121.7 24.7 231 61-318 170-416 (417)
246 KOG0974 WD-repeat protein WDR6 99.6 2.7E-12 5.8E-17 121.8 25.8 187 3-208 100-289 (967)
247 KOG1354 Serine/threonine prote 99.6 2.5E-13 5.4E-18 113.0 16.4 258 79-340 24-359 (433)
248 TIGR02658 TTQ_MADH_Hv methylam 99.6 4.5E-11 9.7E-16 105.2 31.5 267 12-307 26-339 (352)
249 KOG0974 WD-repeat protein WDR6 99.5 2.3E-13 5.1E-18 128.8 17.3 194 81-299 88-289 (967)
250 KOG0280 Uncharacterized conser 99.5 1.8E-12 4E-17 105.7 19.6 258 61-338 46-331 (339)
251 PRK00178 tolB translocation pr 99.5 4E-12 8.8E-17 119.1 25.3 232 62-320 180-427 (430)
252 PRK04792 tolB translocation pr 99.5 5E-12 1.1E-16 118.0 25.1 233 61-320 198-446 (448)
253 KOG1409 Uncharacterized conser 99.5 8E-13 1.7E-17 110.1 16.9 229 2-250 36-272 (404)
254 KOG1064 RAVE (regulator of V-A 99.5 1.5E-13 3.2E-18 136.6 13.7 228 35-291 2207-2439(2439)
255 KOG2315 Predicted translation 99.5 1.5E-11 3.2E-16 109.2 24.1 274 13-322 105-412 (566)
256 PRK01029 tolB translocation pr 99.5 2E-11 4.3E-16 113.0 26.2 241 13-279 165-424 (428)
257 KOG4547 WD40 repeat-containing 99.5 3E-12 6.5E-17 114.3 19.4 191 3-208 6-221 (541)
258 TIGR02800 propeller_TolB tol-p 99.5 7.6E-12 1.7E-16 117.1 23.0 205 103-333 171-387 (417)
259 PF10282 Lactonase: Lactonase, 99.5 9.2E-11 2E-15 106.0 29.1 273 61-340 13-322 (345)
260 PRK00178 tolB translocation pr 99.5 1.5E-11 3.3E-16 115.2 24.8 234 14-279 180-427 (430)
261 KOG1409 Uncharacterized conser 99.5 2.7E-12 5.8E-17 107.0 16.4 248 78-343 22-273 (404)
262 KOG1064 RAVE (regulator of V-A 99.5 8.3E-13 1.8E-17 131.4 15.7 222 50-307 2180-2407(2439)
263 KOG4547 WD40 repeat-containing 99.5 6.5E-12 1.4E-16 112.2 19.3 192 132-342 3-222 (541)
264 PRK04792 tolB translocation pr 99.5 2.4E-11 5.2E-16 113.4 23.9 234 14-279 199-446 (448)
265 PRK01029 tolB translocation pr 99.5 6.8E-11 1.5E-15 109.5 26.7 240 61-322 165-426 (428)
266 KOG2041 WD40 repeat protein [G 99.5 3E-11 6.5E-16 110.3 23.0 276 2-294 26-333 (1189)
267 KOG2314 Translation initiation 99.5 1E-10 2.3E-15 103.7 25.5 267 13-307 282-573 (698)
268 TIGR02658 TTQ_MADH_Hv methylam 99.5 2.3E-10 5E-15 100.7 27.5 263 61-346 27-336 (352)
269 PF04762 IKI3: IKI3 family; I 99.4 7E-10 1.5E-14 111.0 32.9 281 35-342 74-458 (928)
270 COG2706 3-carboxymuconate cycl 99.4 6.2E-10 1.3E-14 94.3 27.2 269 61-341 16-322 (346)
271 KOG1354 Serine/threonine prote 99.4 1.1E-11 2.5E-16 103.3 16.3 243 3-251 38-362 (433)
272 KOG1912 WD40 repeat protein [G 99.4 2.2E-11 4.8E-16 112.1 18.9 309 2-325 79-482 (1062)
273 KOG2041 WD40 repeat protein [G 99.4 6.7E-11 1.4E-15 108.1 19.4 276 37-341 15-338 (1189)
274 KOG4532 WD40-like repeat conta 99.4 2.7E-10 6E-15 92.0 19.7 235 3-249 85-332 (344)
275 PRK11138 outer membrane biogen 99.3 2.2E-09 4.8E-14 99.3 27.2 308 4-338 71-392 (394)
276 KOG0309 Conserved WD40 repeat- 99.3 1.3E-11 2.8E-16 113.0 11.9 275 46-342 32-341 (1081)
277 TIGR03300 assembly_YfgL outer 99.3 3.6E-09 7.8E-14 97.5 26.1 266 49-344 64-342 (377)
278 PF04762 IKI3: IKI3 family; I 99.3 7E-09 1.5E-13 104.0 29.7 310 11-340 95-519 (928)
279 PLN02919 haloacid dehalogenase 99.3 6.9E-09 1.5E-13 106.1 29.1 252 46-302 575-892 (1057)
280 KOG3914 WD repeat protein WDR4 99.3 9.7E-11 2.1E-15 100.0 12.7 167 125-307 65-232 (390)
281 KOG4190 Uncharacterized conser 99.2 5.2E-11 1.1E-15 105.7 10.9 239 77-338 732-986 (1034)
282 COG4946 Uncharacterized protei 99.2 1.1E-08 2.3E-13 89.7 24.6 218 85-329 271-507 (668)
283 PLN02919 haloacid dehalogenase 99.2 5.2E-09 1.1E-13 106.9 26.7 241 4-251 582-891 (1057)
284 COG5170 CDC55 Serine/threonine 99.2 2.6E-10 5.7E-15 94.1 14.0 258 79-340 25-367 (460)
285 PF08450 SGL: SMP-30/Gluconola 99.2 3.2E-08 6.8E-13 85.3 27.9 223 85-327 4-242 (246)
286 COG4946 Uncharacterized protei 99.2 8E-09 1.7E-13 90.4 22.8 172 49-237 331-507 (668)
287 KOG4532 WD40-like repeat conta 99.2 7.4E-09 1.6E-13 83.9 20.0 246 61-329 52-321 (344)
288 KOG4714 Nucleoporin [Nuclear s 99.2 4E-10 8.6E-15 90.7 11.9 195 83-299 39-255 (319)
289 KOG4190 Uncharacterized conser 99.2 4E-11 8.6E-16 106.4 6.6 215 115-342 728-950 (1034)
290 PF15492 Nbas_N: Neuroblastoma 99.2 4.5E-08 9.7E-13 80.7 23.6 234 86-344 3-263 (282)
291 KOG1912 WD40 repeat protein [G 99.2 8.4E-09 1.8E-13 95.6 20.4 247 80-341 15-305 (1062)
292 KOG4714 Nucleoporin [Nuclear s 99.2 7.4E-10 1.6E-14 89.2 12.0 194 1-208 46-255 (319)
293 KOG3914 WD repeat protein WDR4 99.1 4.9E-10 1.1E-14 95.8 11.4 156 46-217 70-233 (390)
294 KOG0309 Conserved WD40 repeat- 99.1 5.1E-10 1.1E-14 102.8 12.1 224 79-322 23-257 (1081)
295 KOG2695 WD40 repeat protein [G 99.1 3.3E-10 7.2E-15 94.9 8.6 156 54-220 228-389 (425)
296 PF13360 PQQ_2: PQQ-like domai 99.1 1.4E-07 3.1E-12 81.0 24.5 222 60-305 2-237 (238)
297 PRK04043 tolB translocation pr 99.1 1.9E-07 4.2E-12 86.1 26.4 224 61-313 169-414 (419)
298 KOG0882 Cyclophilin-related pe 99.1 1.7E-09 3.7E-14 93.8 11.5 219 121-357 8-248 (558)
299 KOG0882 Cyclophilin-related pe 99.1 1.8E-09 3.9E-14 93.7 11.4 253 79-343 8-308 (558)
300 PRK04043 tolB translocation pr 99.0 3.2E-07 7E-12 84.7 25.7 214 12-250 168-402 (419)
301 COG5170 CDC55 Serine/threonine 99.0 2E-09 4.3E-14 89.1 9.6 207 122-342 26-311 (460)
302 KOG2114 Vacuolar assembly/sort 99.0 1.1E-07 2.4E-12 89.5 21.7 207 88-311 31-257 (933)
303 PF15492 Nbas_N: Neuroblastoma 99.0 2E-07 4.3E-12 77.0 20.4 233 46-310 5-271 (282)
304 KOG2695 WD40 repeat protein [G 99.0 1.7E-09 3.7E-14 90.7 8.4 152 138-310 228-388 (425)
305 PF13360 PQQ_2: PQQ-like domai 99.0 9E-08 2E-12 82.2 19.5 228 12-251 2-233 (238)
306 PRK11138 outer membrane biogen 99.0 3E-07 6.5E-12 85.2 24.0 256 4-297 122-393 (394)
307 PF07433 DUF1513: Protein of u 99.0 1.5E-06 3.2E-11 74.2 25.2 231 81-330 5-276 (305)
308 KOG3617 WD40 and TPR repeat-co 99.0 1.9E-08 4.1E-13 94.3 14.7 286 46-334 23-379 (1416)
309 KOG1275 PAB-dependent poly(A) 99.0 1.8E-08 4E-13 95.1 14.4 183 92-296 147-340 (1118)
310 PF08450 SGL: SMP-30/Gluconola 98.9 1.9E-06 4.2E-11 74.2 25.5 214 3-237 13-244 (246)
311 cd00216 PQQ_DH Dehydrogenases 98.9 2.8E-06 6.1E-11 80.6 28.0 293 4-308 63-434 (488)
312 KOG1832 HIV-1 Vpr-binding prot 98.9 1.3E-09 2.9E-14 102.3 5.1 212 79-328 1100-1319(1516)
313 KOG4649 PQQ (pyrrolo-quinoline 98.9 2.5E-06 5.5E-11 69.4 22.6 304 3-341 24-352 (354)
314 KOG1645 RING-finger-containing 98.8 2E-07 4.3E-12 80.2 15.6 243 75-340 188-461 (463)
315 KOG2066 Vacuolar assembly/sort 98.8 4.4E-08 9.6E-13 91.4 12.5 184 122-340 39-233 (846)
316 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.3E-12 90.1 14.9 179 50-246 147-340 (1118)
317 PF00400 WD40: WD domain, G-be 98.8 1.2E-08 2.6E-13 59.4 5.5 39 112-150 1-39 (39)
318 PF07433 DUF1513: Protein of u 98.8 6.2E-06 1.3E-10 70.5 23.0 229 4-246 19-283 (305)
319 PF00400 WD40: WD domain, G-be 98.8 6.7E-09 1.5E-13 60.5 3.4 39 300-338 1-39 (39)
320 PF00930 DPPIV_N: Dipeptidyl p 98.7 9.4E-06 2E-10 73.8 23.9 257 61-328 23-345 (353)
321 KOG1920 IkappaB kinase complex 98.7 2.7E-06 5.8E-11 83.6 21.1 233 37-296 69-363 (1265)
322 PRK02888 nitrous-oxide reducta 98.7 2.1E-05 4.6E-10 73.8 26.0 209 102-331 215-452 (635)
323 KOG1008 Uncharacterized conser 98.7 2.2E-08 4.7E-13 91.1 6.0 263 37-319 57-352 (783)
324 KOG4649 PQQ (pyrrolo-quinoline 98.7 3.7E-05 8.1E-10 62.8 22.5 104 48-153 20-124 (354)
325 KOG1920 IkappaB kinase complex 98.7 7.1E-06 1.5E-10 80.7 21.6 210 81-300 69-324 (1265)
326 KOG2066 Vacuolar assembly/sort 98.7 3.4E-06 7.4E-11 79.3 18.7 175 49-249 48-234 (846)
327 KOG1832 HIV-1 Vpr-binding prot 98.5 4.2E-08 9E-13 92.5 3.2 201 113-344 1092-1295(1516)
328 KOG1008 Uncharacterized conser 98.5 3.2E-08 6.9E-13 90.0 2.3 202 80-298 56-275 (783)
329 PF04841 Vps16_N: Vps16, N-ter 98.5 0.00035 7.5E-09 64.6 28.6 196 103-322 62-271 (410)
330 PRK02888 nitrous-oxide reducta 98.5 7.3E-06 1.6E-10 76.7 17.3 189 46-238 200-451 (635)
331 KOG3621 WD40 repeat-containing 98.5 3.1E-05 6.6E-10 72.1 20.9 123 3-131 46-179 (726)
332 KOG2114 Vacuolar assembly/sort 98.5 2.1E-05 4.7E-10 74.7 20.0 199 38-251 27-246 (933)
333 PF06433 Me-amine-dh_H: Methyl 98.5 0.00021 4.6E-09 62.1 24.3 269 12-308 16-330 (342)
334 PF06433 Me-amine-dh_H: Methyl 98.5 0.00027 5.9E-09 61.4 24.5 269 61-348 17-328 (342)
335 PF04053 Coatomer_WDAD: Coatom 98.5 7.1E-05 1.5E-09 69.1 21.9 228 80-340 32-262 (443)
336 PF11768 DUF3312: Protein of u 98.5 6.2E-06 1.3E-10 75.3 14.6 89 63-153 238-330 (545)
337 PF06977 SdiA-regulated: SdiA- 98.5 0.00011 2.3E-09 62.2 20.8 205 35-245 20-247 (248)
338 PF06977 SdiA-regulated: SdiA- 98.4 5.9E-05 1.3E-09 63.7 19.3 206 80-328 21-239 (248)
339 PF08596 Lgl_C: Lethal giant l 98.4 5.8E-05 1.3E-09 68.7 20.6 215 124-343 3-293 (395)
340 KOG3617 WD40 and TPR repeat-co 98.4 3.5E-06 7.7E-11 79.6 12.6 109 84-207 19-131 (1416)
341 PF04841 Vps16_N: Vps16, N-ter 98.4 0.00051 1.1E-08 63.5 26.3 180 62-250 62-248 (410)
342 PF11768 DUF3312: Protein of u 98.4 6E-06 1.3E-10 75.4 13.2 87 202-299 239-330 (545)
343 KOG1645 RING-finger-containing 98.4 1.3E-05 2.9E-10 69.3 14.2 222 104-346 175-425 (463)
344 PF08596 Lgl_C: Lethal giant l 98.4 0.00026 5.6E-09 64.6 23.3 237 82-331 3-327 (395)
345 KOG3621 WD40 repeat-containing 98.3 6.5E-05 1.4E-09 70.0 18.4 116 35-153 32-155 (726)
346 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.3 0.0036 7.8E-08 60.0 31.1 112 4-118 71-197 (527)
347 COG3391 Uncharacterized conser 98.3 0.003 6.5E-08 58.1 28.8 278 15-322 13-310 (381)
348 cd00216 PQQ_DH Dehydrogenases 98.3 0.00071 1.5E-08 64.5 24.8 226 4-251 112-427 (488)
349 PF00780 CNH: CNH domain; Int 98.3 0.00086 1.9E-08 58.9 23.4 243 90-346 5-261 (275)
350 PF03178 CPSF_A: CPSF A subuni 98.2 0.00031 6.8E-09 63.1 20.3 215 14-245 3-262 (321)
351 COG3386 Gluconolactonase [Carb 98.2 0.00089 1.9E-08 58.8 21.9 211 11-238 45-275 (307)
352 COG3391 Uncharacterized conser 98.2 0.0028 6E-08 58.3 25.9 196 46-251 81-286 (381)
353 COG0823 TolB Periplasmic compo 98.2 0.00013 2.8E-09 67.2 16.8 178 46-238 200-389 (425)
354 PF00780 CNH: CNH domain; Int 98.2 0.0021 4.5E-08 56.5 23.9 232 48-309 5-266 (275)
355 PF04053 Coatomer_WDAD: Coatom 98.2 0.00025 5.3E-09 65.6 18.1 211 46-299 40-263 (443)
356 PF03178 CPSF_A: CPSF A subuni 98.1 0.0017 3.7E-08 58.4 23.0 218 61-295 2-262 (321)
357 PF08553 VID27: VID27 cytoplas 98.1 0.00028 6E-09 69.0 17.8 139 4-152 496-647 (794)
358 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0014 3E-08 59.8 20.9 250 12-287 22-346 (353)
359 PF14583 Pectate_lyase22: Olig 98.0 0.0086 1.9E-07 53.4 23.2 296 19-339 16-380 (386)
360 COG3386 Gluconolactonase [Carb 98.0 0.0079 1.7E-07 52.9 22.9 226 87-329 31-274 (307)
361 PF08553 VID27: VID27 cytoplas 98.0 0.00014 2.9E-09 71.1 13.0 135 192-330 497-638 (794)
362 COG0823 TolB Periplasmic compo 98.0 0.00068 1.5E-08 62.6 16.9 201 104-330 175-389 (425)
363 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0016 3.5E-08 46.5 14.9 102 178-294 2-110 (111)
364 KOG2395 Protein involved in va 97.9 0.0003 6.5E-09 63.6 13.7 133 190-330 347-491 (644)
365 COG3490 Uncharacterized protei 97.9 0.0031 6.7E-08 52.8 18.1 253 70-340 57-348 (366)
366 PF02897 Peptidase_S9_N: Proly 97.9 0.0081 1.8E-07 56.3 23.9 238 46-303 131-409 (414)
367 PHA02713 hypothetical protein; 97.8 0.0024 5.2E-08 61.8 19.1 223 62-309 273-544 (557)
368 KOG4441 Proteins containing BT 97.8 0.0041 8.9E-08 60.1 20.3 225 89-337 282-538 (571)
369 KOG2444 WD40 repeat protein [G 97.8 4.6E-05 9.9E-10 61.3 5.7 142 190-342 31-179 (238)
370 KOG2079 Vacuolar assembly/sort 97.8 0.00077 1.7E-08 66.2 14.1 99 50-151 99-202 (1206)
371 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 66.8 8.9 95 35-132 19-115 (665)
372 KOG4640 Anaphase-promoting com 97.8 0.00016 3.5E-09 66.7 9.0 73 80-153 20-93 (665)
373 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0027 5.9E-08 45.4 13.2 100 125-243 2-109 (111)
374 KOG4441 Proteins containing BT 97.7 0.0051 1.1E-07 59.4 19.5 225 50-300 285-548 (571)
375 PF02897 Peptidase_S9_N: Proly 97.7 0.042 9.1E-07 51.5 27.5 223 83-324 126-384 (414)
376 smart00320 WD40 WD40 repeats. 97.7 0.0001 2.2E-09 42.0 5.0 38 113-150 3-40 (40)
377 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.0041 8.8E-08 56.7 17.1 83 262-344 300-402 (415)
378 PHA02713 hypothetical protein; 97.7 0.015 3.3E-07 56.3 21.6 215 103-343 273-536 (557)
379 smart00320 WD40 WD40 repeats. 97.7 8.3E-05 1.8E-09 42.4 4.0 39 300-338 2-40 (40)
380 KOG1897 Damage-specific DNA bi 97.6 0.084 1.8E-06 52.2 26.0 310 4-341 550-899 (1096)
381 KOG2444 WD40 repeat protein [G 97.6 0.00015 3.3E-09 58.4 5.2 61 190-250 71-134 (238)
382 KOG2280 Vacuolar assembly/sort 97.5 0.042 9.2E-07 52.6 20.5 183 102-307 64-255 (829)
383 COG5276 Uncharacterized conser 97.4 0.057 1.2E-06 45.8 24.6 265 50-340 96-369 (370)
384 COG3204 Uncharacterized protei 97.4 0.063 1.4E-06 45.7 18.8 189 120-323 83-296 (316)
385 PF14727 PHTB1_N: PTHB1 N-term 97.4 0.11 2.3E-06 47.9 23.5 235 3-248 38-318 (418)
386 PF05096 Glu_cyclase_2: Glutam 97.4 0.071 1.5E-06 45.2 22.1 183 124-328 46-249 (264)
387 KOG2079 Vacuolar assembly/sort 97.3 0.00086 1.9E-08 65.9 8.1 100 229-338 98-201 (1206)
388 PRK13616 lipoprotein LpqB; Pro 97.3 0.021 4.4E-07 55.4 17.1 190 38-244 351-564 (591)
389 KOG4499 Ca2+-binding protein R 97.3 0.047 1E-06 44.6 16.1 196 61-279 37-263 (310)
390 KOG2395 Protein involved in va 97.2 0.0059 1.3E-07 55.6 11.8 143 91-248 344-500 (644)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.23 5E-06 47.9 25.8 150 4-156 122-337 (527)
392 PRK13616 lipoprotein LpqB; Pro 97.1 0.049 1.1E-06 52.9 17.9 188 123-335 350-563 (591)
393 PF14583 Pectate_lyase22: Olig 97.1 0.18 3.9E-06 45.3 22.2 227 87-332 42-304 (386)
394 PF05096 Glu_cyclase_2: Glutam 97.1 0.14 3E-06 43.4 18.7 180 46-238 52-250 (264)
395 KOG4499 Ca2+-binding protein R 97.1 0.12 2.5E-06 42.4 18.2 99 219-321 158-264 (310)
396 KOG3630 Nuclear pore complex, 97.1 0.011 2.4E-07 58.9 12.6 155 124-286 102-261 (1405)
397 COG3490 Uncharacterized protei 97.0 0.073 1.6E-06 44.9 15.5 235 46-296 75-346 (366)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.14 3E-06 47.1 18.8 82 219-309 308-409 (415)
399 PF12894 Apc4_WD40: Anaphase-p 97.0 0.003 6.4E-08 37.7 5.3 35 79-114 10-44 (47)
400 TIGR03118 PEPCTERM_chp_1 conse 97.0 0.2 4.3E-06 43.0 24.4 223 82-320 24-307 (336)
401 COG3204 Uncharacterized protei 96.9 0.17 3.7E-06 43.1 16.5 168 80-250 85-265 (316)
402 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0054 1.2E-07 36.6 5.8 35 215-249 8-42 (47)
403 PHA02790 Kelch-like protein; P 96.8 0.16 3.5E-06 48.5 18.4 183 91-300 271-472 (480)
404 KOG2377 Uncharacterized conser 96.8 0.27 5.8E-06 44.6 17.6 151 46-209 29-187 (657)
405 PF10647 Gmad1: Lipoprotein Lp 96.7 0.33 7.1E-06 41.8 19.9 154 38-199 25-187 (253)
406 PHA03098 kelch-like protein; P 96.7 0.16 3.4E-06 49.5 18.0 187 90-300 293-513 (534)
407 PHA03098 kelch-like protein; P 96.6 0.26 5.7E-06 48.0 18.6 177 14-211 312-515 (534)
408 PF05694 SBP56: 56kDa selenium 96.6 0.56 1.2E-05 42.8 21.5 229 91-339 86-400 (461)
409 KOG2280 Vacuolar assembly/sort 96.6 0.51 1.1E-05 45.7 19.1 176 61-250 64-248 (829)
410 TIGR03074 PQQ_membr_DH membran 96.6 0.8 1.7E-05 46.1 21.5 207 92-308 194-487 (764)
411 PF07995 GSDH: Glucose / Sorbo 96.5 0.57 1.2E-05 42.3 26.0 244 82-334 3-329 (331)
412 PF08728 CRT10: CRT10; InterP 96.5 0.33 7.2E-06 47.5 17.7 156 134-297 49-245 (717)
413 PF05694 SBP56: 56kDa selenium 96.4 0.71 1.5E-05 42.2 19.3 193 48-251 85-345 (461)
414 KOG1916 Nuclear protein, conta 96.4 0.00089 1.9E-08 64.6 0.1 90 61-151 153-264 (1283)
415 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.86 1.9E-05 42.1 27.6 262 49-338 36-358 (418)
416 TIGR03074 PQQ_membr_DH membran 96.3 0.98 2.1E-05 45.5 20.1 115 3-119 195-353 (764)
417 KOG2377 Uncharacterized conser 96.2 0.9 1.9E-05 41.4 17.7 142 84-237 26-172 (657)
418 PF12234 Rav1p_C: RAVE protein 96.2 0.21 4.5E-06 48.3 14.8 120 81-206 30-155 (631)
419 KOG3630 Nuclear pore complex, 96.2 0.066 1.4E-06 53.8 11.7 142 177-328 102-261 (1405)
420 COG5276 Uncharacterized conser 96.2 0.67 1.5E-05 39.6 23.4 262 2-297 96-368 (370)
421 PF12234 Rav1p_C: RAVE protein 96.2 0.21 4.6E-06 48.2 14.5 107 190-297 42-155 (631)
422 PHA02790 Kelch-like protein; P 96.1 0.73 1.6E-05 44.1 18.1 139 4-153 274-424 (480)
423 TIGR02604 Piru_Ver_Nterm putat 96.1 1.1 2.4E-05 41.1 23.1 151 81-239 14-204 (367)
424 PF15390 DUF4613: Domain of un 96.1 0.96 2.1E-05 42.7 17.6 154 81-250 20-188 (671)
425 PF02333 Phytase: Phytase; In 96.0 1.1 2.4E-05 40.5 22.3 208 90-307 66-300 (381)
426 PRK10115 protease 2; Provision 96.0 2.1 4.5E-05 43.0 26.7 70 82-153 128-208 (686)
427 PRK10115 protease 2; Provision 95.9 2.2 4.9E-05 42.8 29.4 110 39-151 129-254 (686)
428 KOG1897 Damage-specific DNA bi 95.9 2.3 4.9E-05 42.8 29.5 269 50-344 370-663 (1096)
429 PF10168 Nup88: Nuclear pore c 95.8 2.3 5.1E-05 42.5 21.6 86 123-209 85-181 (717)
430 KOG1916 Nuclear protein, conta 95.6 0.017 3.8E-07 56.2 4.9 137 13-152 153-323 (1283)
431 COG3823 Glutamine cyclotransfe 95.6 0.98 2.1E-05 36.6 14.2 177 133-328 55-247 (262)
432 COG5167 VID27 Protein involved 95.5 0.21 4.7E-06 45.8 10.8 143 180-329 471-622 (776)
433 PF10168 Nup88: Nuclear pore c 95.5 0.66 1.4E-05 46.2 15.2 81 219-300 85-181 (717)
434 PF08728 CRT10: CRT10; InterP 95.5 0.89 1.9E-05 44.6 15.6 154 92-247 49-245 (717)
435 PF10647 Gmad1: Lipoprotein Lp 95.4 1.5 3.3E-05 37.7 21.8 151 124-290 25-187 (253)
436 PRK13684 Ycf48-like protein; P 95.1 2.5 5.3E-05 38.3 18.2 153 122-297 172-330 (334)
437 PF15390 DUF4613: Domain of un 94.9 1.1 2.3E-05 42.4 13.6 148 123-297 20-185 (671)
438 PF14870 PSII_BNR: Photosynthe 94.8 2.6 5.7E-05 37.2 26.3 188 83-295 106-301 (302)
439 KOG1900 Nuclear pore complex, 94.7 2.1 4.6E-05 44.5 16.2 139 11-153 97-273 (1311)
440 KOG2247 WD40 repeat-containing 94.7 0.0053 1.2E-07 55.4 -1.4 143 44-204 40-185 (615)
441 PF14781 BBS2_N: Ciliary BBSom 94.6 1.2 2.6E-05 33.4 10.7 119 127-250 3-127 (136)
442 PF10313 DUF2415: Uncharacteri 94.4 0.17 3.6E-06 29.2 4.8 31 81-111 1-34 (43)
443 PF14870 PSII_BNR: Photosynthe 94.2 3.7 8.1E-05 36.2 26.5 229 78-335 14-256 (302)
444 PRK14131 N-acetylneuraminic ac 94.1 4.8 0.0001 37.2 20.4 95 49-143 38-149 (376)
445 KOG2247 WD40 repeat-containing 94.1 0.0068 1.5E-07 54.8 -1.9 153 121-296 33-186 (615)
446 KOG1983 Tomosyn and related SN 94.0 1.1 2.3E-05 46.8 13.0 31 80-110 35-65 (993)
447 COG4590 ABC-type uncharacteriz 94.0 0.35 7.7E-06 43.8 8.3 163 80-252 220-390 (733)
448 PF14761 HPS3_N: Hermansky-Pud 93.9 3.1 6.8E-05 34.2 13.3 107 191-300 30-165 (215)
449 PF10313 DUF2415: Uncharacteri 93.5 0.36 7.8E-06 27.9 5.0 30 270-299 1-34 (43)
450 TIGR03547 muta_rot_YjhT mutatr 93.5 5.8 0.00013 36.2 21.6 40 199-238 168-209 (346)
451 COG5167 VID27 Protein involved 93.5 1.5 3.2E-05 40.7 11.4 139 3-152 481-632 (776)
452 COG1520 FOG: WD40-like repeat 93.5 6.1 0.00013 36.4 20.8 199 91-309 68-279 (370)
453 TIGR03547 muta_rot_YjhT mutatr 93.4 6 0.00013 36.0 19.7 95 49-143 17-128 (346)
454 TIGR02604 Piru_Ver_Nterm putat 93.2 4.4 9.6E-05 37.2 14.7 147 177-329 15-202 (367)
455 PF07569 Hira: TUP1-like enhan 93.0 0.99 2.1E-05 37.8 9.1 59 190-249 23-96 (219)
456 COG3823 Glutamine cyclotransfe 92.7 2.9 6.4E-05 34.0 10.6 108 3-117 58-165 (262)
457 PF11635 Med16: Mediator compl 92.5 14 0.0003 37.7 18.3 76 218-293 259-345 (753)
458 PF07569 Hira: TUP1-like enhan 92.2 0.89 1.9E-05 38.1 7.9 84 214-300 8-97 (219)
459 PF14761 HPS3_N: Hermansky-Pud 92.1 5.8 0.00013 32.6 17.0 179 84-297 21-213 (215)
460 TIGR03548 mutarot_permut cycli 92.0 8.9 0.00019 34.5 17.5 108 91-211 72-198 (323)
461 PLN02153 epithiospecifier prot 92.0 9.3 0.0002 34.7 22.1 65 49-113 85-170 (341)
462 PF14781 BBS2_N: Ciliary BBSom 91.9 4.3 9.2E-05 30.5 13.1 105 190-305 11-132 (136)
463 PF10395 Utp8: Utp8 family; I 91.9 14 0.0003 36.4 18.9 162 79-251 128-308 (670)
464 PRK14131 N-acetylneuraminic ac 91.8 11 0.00023 34.9 20.7 54 48-101 83-149 (376)
465 PF10433 MMS1_N: Mono-function 91.8 13 0.00028 36.0 19.7 226 81-320 44-309 (504)
466 TIGR03548 mutarot_permut cycli 91.3 11 0.00023 34.0 19.5 103 49-153 72-195 (323)
467 COG4257 Vgb Streptogramin lyas 91.3 8.7 0.00019 32.9 19.4 239 80-339 61-304 (353)
468 PLN02153 epithiospecifier prot 91.2 11 0.00025 34.2 21.5 21 133-153 85-110 (341)
469 TIGR01063 gyrA DNA gyrase, A s 91.1 20 0.00044 36.8 23.4 250 87-340 491-769 (800)
470 PF07995 GSDH: Glucose / Sorbo 91.1 12 0.00025 33.9 23.3 71 218-293 252-330 (331)
471 KOG1983 Tomosyn and related SN 90.9 10 0.00022 39.9 15.2 25 227-251 243-267 (993)
472 KOG1900 Nuclear pore complex, 90.8 3.6 7.8E-05 42.9 11.6 157 84-250 82-274 (1311)
473 PLN02193 nitrile-specifier pro 90.8 16 0.00034 35.0 19.2 61 190-251 280-354 (470)
474 smart00036 CNH Domain found in 90.8 12 0.00025 33.4 26.0 238 50-309 13-281 (302)
475 PF12768 Rax2: Cortical protei 90.7 9.5 0.00021 33.3 12.7 117 198-321 15-147 (281)
476 smart00036 CNH Domain found in 90.4 12 0.00027 33.2 23.9 243 92-348 13-278 (302)
477 PF08801 Nucleoporin_N: Nup133 90.2 11 0.00024 35.5 14.0 185 81-306 26-227 (422)
478 PF13449 Phytase-like: Esteras 90.2 14 0.0003 33.4 15.9 159 122-285 19-231 (326)
479 PRK05560 DNA gyrase subunit A; 90.1 25 0.00054 36.2 23.3 249 89-340 495-772 (805)
480 PF11635 Med16: Mediator compl 90.0 25 0.00054 36.0 17.9 67 269-335 259-345 (753)
481 COG5308 NUP170 Nuclear pore co 89.0 3.6 7.9E-05 41.0 9.6 140 11-153 100-276 (1263)
482 KOG3522 Predicted guanine nucl 88.8 5.4 0.00012 39.6 10.6 137 5-153 550-698 (925)
483 PF10214 Rrn6: RNA polymerase 88.6 32 0.00069 35.4 24.8 167 78-250 77-278 (765)
484 PF03022 MRJP: Major royal jel 88.4 17 0.00037 32.0 17.3 172 61-235 34-252 (287)
485 TIGR02276 beta_rpt_yvtn 40-res 88.3 1 2.2E-05 25.8 3.8 41 48-88 1-41 (42)
486 TIGR01063 gyrA DNA gyrase, A s 88.2 34 0.00074 35.2 25.6 245 46-298 492-769 (800)
487 PF12768 Rax2: Cortical protei 87.9 10 0.00022 33.2 10.9 100 102-210 16-126 (281)
488 PF13449 Phytase-like: Esteras 87.8 13 0.00029 33.4 12.2 111 218-329 19-165 (326)
489 COG1520 FOG: WD40-like repeat 87.4 24 0.00051 32.6 20.7 197 5-218 71-279 (370)
490 KOG3616 Selective LIM binding 87.3 19 0.00041 35.6 13.0 70 79-151 13-82 (1636)
491 KOG4460 Nuclear pore complex, 87.2 17 0.00036 34.3 12.1 26 177-204 105-130 (741)
492 PRK13684 Ycf48-like protein; P 87.1 23 0.0005 32.1 27.7 150 175-338 172-329 (334)
493 COG5290 IkappaB kinase complex 87.0 22 0.00048 35.4 13.3 94 221-322 249-348 (1243)
494 TIGR03606 non_repeat_PQQ dehyd 86.8 28 0.00062 32.9 13.9 117 115-240 22-167 (454)
495 PF11715 Nup160: Nucleoporin N 86.7 3.6 7.8E-05 40.3 8.6 80 228-307 156-257 (547)
496 PLN02193 nitrile-specifier pro 86.2 32 0.0007 32.9 23.4 102 49-153 228-352 (470)
497 TIGR02276 beta_rpt_yvtn 40-res 86.0 4.3 9.3E-05 23.1 5.6 36 191-226 6-41 (42)
498 PF07250 Glyoxal_oxid_N: Glyox 86.0 15 0.00033 31.2 10.7 148 64-216 49-206 (243)
499 PF12657 TFIIIC_delta: Transcr 85.3 5.4 0.00012 32.0 7.5 30 123-152 86-121 (173)
500 PF12657 TFIIIC_delta: Transcr 85.0 9.9 0.00021 30.5 9.0 33 176-208 86-122 (173)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-54 Score=355.51 Aligned_cols=308 Identities=21% Similarity=0.353 Sum_probs=277.9
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~ 80 (451)
..||+|+ .|.++++||+.+..+..+.++ |.+.|.|++ |+|||+.||+|+.+ |+|++||..+++...+ ..|.
T Consensus 128 ~~l~tGs-GD~TvR~WD~~TeTp~~t~Kg---H~~WVlcva--wsPDgk~iASG~~d-g~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 128 SRLVTGS-GDTTVRLWDLDTETPLFTCKG---HKNWVLCVA--WSPDGKKIASGSKD-GSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred ceEEecC-CCceEEeeccCCCCcceeecC---CccEEEEEE--ECCCcchhhccccC-CeEEEecCCCCCcccccccCcc
Confidence 3689999 999999999999999988775 558999999 99999999999999 9999999998887644 5589
Q ss_pred CCeeEEEECC-----CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 81 EPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 81 ~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
..|++++|.| ..++||+++.||.|+|||+..+.++..+.+|..+|+|++|-.+| ++++|+.|++|++|+.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a---- 275 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRA---- 275 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEc----
Confidence 9999999965 57799999999999999999999999999999999999998654 8999999999999998
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeec-----------C-----------------------CeeEEEEeeCCCcE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYG-----------G-----------------------VSATIVSASEDRTC 201 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-----------~-----------------------~~~~l~s~~~d~~i 201 (451)
....+.+.+.+|...|+.++.+.+ + .+..+++|+.|.++
T Consensus 276 -------~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tl 348 (480)
T KOG0271|consen 276 -------LDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTL 348 (480)
T ss_pred -------cchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceE
Confidence 446678899999999999988621 1 11469999999999
Q ss_pred EEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.+|+.... +++..+. |...|+.+.|+|+++++++++.|..|++||.+++ +.+.++++|-.+|+.++|+.
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---------k~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---------KFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---------chhhhhhhccceeEEEEecc
Confidence 99997654 3555544 8889999999999999999999999999999998 56889999999999999999
Q ss_pred -CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 280 -GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 280 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.++|++|+.|.++++||+++.++...+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 89999999999999999999999999999999999999999999999999999999996
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-52 Score=343.50 Aligned_cols=292 Identities=24% Similarity=0.341 Sum_probs=264.4
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
..+|...|.|+. |+|+|..|++|+.| .++++||..+...... ..|...|.|++|+|||+.||+|+.||.|++||.+
T Consensus 111 ~~GH~e~Vl~~~--fsp~g~~l~tGsGD-~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 111 IAGHGEAVLSVQ--FSPTGSRLVTGSGD-TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cCCCCCcEEEEE--ecCCCceEEecCCC-ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 346778899999 99999999999999 9999999998776544 5689999999999999999999999999999999
Q ss_pred CCcce-eeeccccCCeeEEEEcc-----CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 111 SGRLL-KKWHAHYRAVTCLVFSE-----DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 111 ~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
+|+++ ..+.+|...|++++|.| ..++|++++.||.++|||+ ....++..+.+|+.+|+|++|.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~-----------~~~~~~~~lsgHT~~VTCvrwG 256 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT-----------KLGTCVRTLSGHTASVTCVRWG 256 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc-----------cCceEEEEeccCccceEEEEEc
Confidence 99775 57899999999999976 5678999999999999999 4567888999999999999996
Q ss_pred ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEEC-----------CCCC---------------------
Q 012996 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD-----------PAEH--------------------- 231 (451)
Q Consensus 185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~-----------~~~~--------------------- 231 (451)
-. .+|++|+.|++|++|+...|.+.+.+. |...|+.++.+ |.++
T Consensus 257 G~---gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 257 GE---GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred CC---ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 55 599999999999999999999998887 77888888766 3333
Q ss_pred ----EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe
Q 012996 232 ----VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF 306 (451)
Q Consensus 232 ----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~ 306 (451)
.|++|++|.++.+|+..... +++..+.+|..-|+.+.||| +.++|+++.|..|++||-++|+.+.+|
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~k--------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf 405 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSK--------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF 405 (480)
T ss_pred cCcceeEEecCCceEEEecccccc--------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh
Confidence 49999999999999987764 67889999999999999999 999999999999999999999999999
Q ss_pred ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996 307 RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
++|-++|..++|+.|.++|++||.|.++++|+++..++..-+
T Consensus 406 RGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDL 447 (480)
T ss_pred hhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccC
Confidence 999999999999999999999999999999999988775544
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.1e-50 Score=335.25 Aligned_cols=280 Identities=21% Similarity=0.298 Sum_probs=260.8
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEEcC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~ 110 (451)
+...++..+. |+++++.+|+++.+ |.++||+..+.... ....|.+.|.++.|+|. +..+|+|+.||++++|++.
T Consensus 173 gd~rPis~~~--fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCS--FSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeE--eecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 3445677777 99999999999999 99999999877554 44679999999999996 6689999999999999999
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
+..++..+.+|...|..++|+|+|++|+|++.|.+-++||+++ ...+....+|...|.+++|.++| .
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-----------k~ElL~QEGHs~~v~~iaf~~DG--S 316 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-----------KSELLLQEGHSKGVFSIAFQPDG--S 316 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-----------chhhHhhcccccccceeEecCCC--c
Confidence 9999999999999999999999999999999999999999965 44556678999999999999999 8
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
+++||+.|..-+|||+++++++..+. |..+|.+++|+|+|..|++|+.|++++|||++.. ..+.++.+|.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---------~~ly~ipAH~ 387 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---------SELYTIPAHS 387 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---------ccceeccccc
Confidence 99999999999999999999998887 8899999999999999999999999999999987 4478899999
Q ss_pred cceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 270 KAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 270 ~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.-|+.+.|+| |.+|+|++.|++++||...++.+++++.+|.+.|.++..+||++++++++.|.++++|.
T Consensus 388 nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 388 NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999998 99999999999999999999999999999999999999999999999999999999996
No 4
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=313.47 Aligned_cols=431 Identities=34% Similarity=0.497 Sum_probs=322.3
Q ss_pred CeEEEeecCCCCCC-eEEEECccCceeeeeecC-CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-ee
Q 012996 1 MELLIASSSVADTG-IGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS 77 (451)
Q Consensus 1 ~e~~l~s~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~ 77 (451)
||..+++.++.|.. +.+||+.||....+|++. .....+...+. +.+++++...-..|.+|.+....... ..
T Consensus 5 le~~~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q~~ 78 (476)
T KOG0646|consen 5 LEGTVCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQYI 78 (476)
T ss_pred eeEEEEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhhhc
Confidence 67777776656655 999999999999999887 33444444433 46666665554799999998766554 45
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
..+++|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+.+|...|+|+.|+.||.+|+|||.||.|.+|.+......
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSA 158 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccc
Confidence 56789999999999999999989999999999999999999999999999999999999999999999999998664333
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
... ....+.+.+..|+.+|+++...+.+.+.+++|++.|.++++||+..+..+.++..+..+.+++++|.+..+++|+
T Consensus 159 ~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 159 DND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred ccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC
Confidence 222 256678899999999999999998777899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCC-------CCCceeeeeeccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 238 RDGSIYIAALNAESPSTS-------SYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.+|.|.+.++........ ......+..+.+|.+ +|+|++++- |.+|++|+.||+|+|||+.+.++++++.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999998876542111 122344667889988 999999999 9999999999999999999999999998
Q ss_pred cCCCCeeEEEEEecCceeeecc-CCCCccccccCCCCCCC---ccccccccccccccceeEEecCCCCCCCCCCcccchh
Q 012996 308 LAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQLPP---PLDKYVTSADEDVDKKGVIRLPSLYNAPRDASYISHR 383 (451)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (451)
...++|+.+.+.|-.+-...+. ....+..|.... .+++ ...++-+.............+++........+..-..
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr-~i~~~~~~d~~~~~~v~~~~~~~~q~~pps~sd~~l~l~a~~~s 395 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKR-MIPNLERVDEKYKNGVHLHDIGYQQLEPPSESDPILQLSANDFS 395 (476)
T ss_pred hhccccceeEeeccccceecccccCccCCchHhhc-cCCccccccccccCCceecccCEEeccCCcccCcceeecccccc
Confidence 7789999999987544444432 223344444332 2222 1111111111111111122222222222222222222
Q ss_pred hHHHHHHHhhhcC--------------------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 012996 384 TIENHIKELQQQG--------------------SSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDG 440 (451)
Q Consensus 384 ~~~~~~~~l~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 440 (451)
..++...+.+++. ...+.+.+.+++++++++..++..++.+...++++.+.++..+.
T Consensus 396 ~~~e~v~~~~ae~~~~~~~~s~v~e~d~~~~~~~s~~~e~e~~rl~~e~k~~~q~~~~~~k~~~~~~~~i~ee~~~~ 472 (476)
T KOG0646|consen 396 AYEEQVKEQEAETSHIGKVSSNVKEIDNKIDATRSLELEAEVDRLKTELKRSLQALTHAYKELRNMLEEIYEEHQQM 472 (476)
T ss_pred chhhhhhhhhhhhhccccccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 2334444433331 12345677788999999999999999999999998877776544
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.5e-45 Score=292.76 Aligned_cols=281 Identities=21% Similarity=0.373 Sum_probs=252.9
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-CceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
..+|.+.|.++. |+++++++++++.| |.+.|||.-+ .+......+...|..++|+|.|+++|+|+-|+...||++.
T Consensus 51 LkGH~~Ki~~~~--ws~Dsr~ivSaSqD-GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 51 LKGHLNKIYAMD--WSTDSRRIVSASQD-GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred ecccccceeeeE--ecCCcCeEEeeccC-CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 345778899988 99999999999999 9999999764 4555566678899999999999999999999999999998
Q ss_pred CC------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 111 SG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 111 ~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
+. ...+.+.+|.+.+.|+.|.+| .+|+|++.|.+..+||+++ .+.+..|.+|.+.|.++.++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~-----------g~~~~~f~GH~gDV~slsl~ 195 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET-----------GQQTQVFHGHTGDVMSLSLS 195 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc-----------ceEEEEecCCcccEEEEecC
Confidence 55 345678999999999999875 5699999999999999954 66788899999999999999
Q ss_pred e-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 185 Y-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 185 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
| ++ +.+++|+.|+..++||++.+...+.|. |.+.|+++.|.|+|.-|++|+.|+..++||++... .+
T Consensus 196 p~~~--ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---------~~ 264 (343)
T KOG0286|consen 196 PSDG--NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---------EL 264 (343)
T ss_pred CCCC--CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc---------EE
Confidence 9 55 899999999999999999999999998 89999999999999999999999999999999863 23
Q ss_pred eeec--cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 263 GSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 263 ~~~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
..+. ....+|++++||. |++|++|..|.++.+||.-.++.+..+.+|.+.|++|..+|||.-|++||.|..++||.
T Consensus 265 a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 265 AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 3332 3346899999999 99999999999999999999999999999999999999999999999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.4e-46 Score=310.17 Aligned_cols=265 Identities=20% Similarity=0.319 Sum_probs=243.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeec--cCcccCCCCCCccEEEEECCCCcee-eeecC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVE-VKSLP 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~ 79 (451)
..||||+ .+|.++||+..++..+.+|.+|.+. +.++. |+|. +..+|+++.| |++++|++++.... ....|
T Consensus 188 ~~laT~s-wsG~~kvW~~~~~~~~~~l~gH~~~---v~~~~--fhP~~~~~~lat~s~D-gtvklw~~~~e~~l~~l~gH 260 (459)
T KOG0272|consen 188 KHLATGS-WSGLVKVWSVPQCNLLQTLRGHTSR---VGAAV--FHPVDSDLNLATASAD-GTVKLWKLSQETPLQDLEGH 260 (459)
T ss_pred CeEEEee-cCCceeEeecCCcceeEEEeccccc---eeeEE--EccCCCccceeeeccC-CceeeeccCCCcchhhhhcc
Confidence 4689999 9999999999999999999876654 55555 9997 5688999998 99999999985544 44568
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||.+++|||.|..-+|||+++
T Consensus 261 ~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt------ 334 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT------ 334 (459)
T ss_pred hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc------
Confidence 89999999999999999999999999999999999989999999999999999999999999999999999976
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEe
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGS 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~ 237 (451)
..++..+.+|..+|.++.|+|+| ..++||+.|++++|||++..+.+..+. |.+-|+.+.|+| .|.+|++++
T Consensus 335 -----gr~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 335 -----GRCIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred -----CcEEEEecccccceeeEeECCCc--eEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 45677889999999999999999 899999999999999999999988887 889999999999 889999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
.|+++++|...+. .++..+.||.+.|.++.+++ +.++++++.|.++++|.
T Consensus 408 yD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCc---------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999998885 67889999999999999999 99999999999999996
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.1e-43 Score=273.68 Aligned_cols=275 Identities=16% Similarity=0.259 Sum_probs=242.3
Q ss_pred CcccCCCCCCccEEEEECCCCceeeeecC-CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeE
Q 012996 51 QLREQPSASSGSILYWSWSKPQVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTC 127 (451)
Q Consensus 51 ~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~ 127 (451)
-+|+++|.| .+|++|...++.+.....| ...|+.+.+.|+++.||+++. ..|++||+++++ ++.++.+|...|++
T Consensus 11 viLvsA~YD-hTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYD-HTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCc-ceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 467788888 9999999999999877766 568999999999999999876 479999999875 58899999999999
Q ss_pred EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
+.|..+|+++++|++||+++|||++. . .......|..+|+++..+|+. ..|++|..+|.|++||+.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~-----------~-~~qR~~~~~spVn~vvlhpnQ--teLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRS-----------L-SCQRNYQHNSPVNTVVLHPNQ--TELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccC-----------c-ccchhccCCCCcceEEecCCc--ceEEeecCCCcEEEEEcc
Confidence 99999999999999999999999965 1 223344578999999999998 799999999999999999
Q ss_pred CCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEE
Q 012996 208 KGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI 284 (451)
Q Consensus 208 ~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 284 (451)
...+...+. ....|.++.+.|+|.+++.+...|..++|++-... ......++..++.|.+.+..+.+|| +++|+
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~---~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ---TASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC---ccccceEhhheecccceEEEEEECCCCcEEE
Confidence 887666554 45789999999999999999999999999998742 2223467788999999999999999 99999
Q ss_pred EEcCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 285 SGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 285 s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
++|.|.+++||+.++. +.-..+.+|...+++.+||.||+||++|+.|+.+++|+...++.
T Consensus 232 t~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred eecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 9999999999999988 66667889999999999999999999999999999999886653
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.6e-42 Score=269.38 Aligned_cols=287 Identities=18% Similarity=0.305 Sum_probs=247.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLP 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~ 79 (451)
++||+++ .|.+|++|...+|.+.++++...++++.+. ..|+++.||+++. ..|++||+++... .....|
T Consensus 11 viLvsA~-YDhTIRfWqa~tG~C~rTiqh~dsqVNrLe-----iTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAG-YDHTIRFWQALTGICSRTIQHPDSQVNRLE-----ITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEecc-CcceeeeeehhcCeEEEEEecCccceeeEE-----EcCCcchhhhccC--CeeEEEEccCCCCCceeEEecc
Confidence 7899999 999999999999999999987666655544 8999999999998 6999999987654 233457
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|+++.|..+|+++++|+.||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.+
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~------ 155 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE------ 155 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccC------
Confidence 8999999999999999999999999999999977666665 779999999999999999999999999999965
Q ss_pred hhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc------eeeeee-cccceeEEEECCCCC
Q 012996 160 SQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------LLRNIV-FPSVIDAIALDPAEH 231 (451)
Q Consensus 160 ~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------~~~~~~-~~~~i~~~~~~~~~~ 231 (451)
..+... ...-..+|.++.+.++| .+++.+...|.+++|++-+.. ++..++ |.+.+..+.+||+++
T Consensus 156 -----~~c~~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 156 -----NSCTHELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred -----CccccccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence 212222 23345689999999999 899999999999999987653 334444 788999999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
+|++++.|.+++||+..+.- +.-..+.+|...+...+||. +.||++|+.|+.+++||+..++.++...+|.
T Consensus 229 ~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred EEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 99999999999999998752 55667889999999999999 9999999999999999999999999999998
Q ss_pred CCeeEEEEE
Q 012996 311 GPVNNILVV 319 (451)
Q Consensus 311 ~~v~~l~~s 319 (451)
.+..+++..
T Consensus 301 K~~vc~~ln 309 (311)
T KOG0315|consen 301 KAAVCVALN 309 (311)
T ss_pred cccEEEEee
Confidence 877777654
No 9
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-42 Score=309.28 Aligned_cols=327 Identities=22% Similarity=0.323 Sum_probs=269.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc--ccCCCCCCccEEEEECCCCce--eeeec
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL--REQPSASSGSILYWSWSKPQV--EVKSL 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--l~~~~~d~g~i~vw~~~~~~~--~~~~~ 78 (451)
.+||+|+ .||.++|||+..+.+...|++|. +.|..+. |.|+-.+ |++++.| +.+++||+..... .....
T Consensus 118 ~LlAtgg-aD~~v~VWdi~~~~~th~fkG~g---GvVssl~--F~~~~~~~lL~sg~~D-~~v~vwnl~~~~tcl~~~~~ 190 (775)
T KOG0319|consen 118 TLLATGG-ADGRVKVWDIKNGYCTHSFKGHG---GVVSSLL--FHPHWNRWLLASGATD-GTVRVWNLNDKRTCLHTMIL 190 (775)
T ss_pred ceEEecc-ccceEEEEEeeCCEEEEEecCCC---ceEEEEE--eCCccchhheeecCCC-ceEEEEEcccCchHHHHHHh
Confidence 5789999 99999999999999999998755 5566666 8887655 5555555 9999999985544 23345
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-----------------------------------------
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----------------------------------------- 117 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------- 117 (451)
|...|++++|++|+..+++++.|..+.|||+.+.+.+.+
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 888999999999988888888888888888632110000
Q ss_pred --------------------------------------------------------------------------------
Q 012996 118 -------------------------------------------------------------------------------- 117 (451)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (451)
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~ 350 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRL 350 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEE
Confidence
Q ss_pred ----------eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 118 ----------WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 118 ----------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
+.+|...|.++....+|-+|+||+.|.++++|.+.+. .....++....+|...|.+++++..+
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~-------~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN-------CSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC-------cchhhhhhhhcccccccceeeecccC
Confidence 0157777777775556778899999999999987331 12334566778999999999997766
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCcee---ee-------eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLL---RN-------IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~---~~-------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
. .+|+++|.|+++++|++...+.. .. ..|...|++++++|+.+++++|+.|.+.++|++...
T Consensus 424 a-sffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~------- 495 (775)
T KOG0319|consen 424 A-SFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL------- 495 (775)
T ss_pred c-cEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------
Confidence 5 89999999999999999762211 11 127889999999999999999999999999999954
Q ss_pred CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
....++.+|...|.++.|+| ...++|+|.|++|+||.+.++.++++|.+|...|..+.|-.+|..|++++.||.+++
T Consensus 496 --~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 496 --RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred --eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 77899999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccccccc
Q 012996 337 SRRHGSQLPPPLDKYVT 353 (451)
Q Consensus 337 w~~~~~~~~~~~~~~~~ 353 (451)
|++++..+...++.+-.
T Consensus 574 Wnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHND 590 (775)
T ss_pred Eeccchhhhhhhhhccc
Confidence 99999999888876643
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.7e-42 Score=271.64 Aligned_cols=284 Identities=18% Similarity=0.313 Sum_probs=239.1
Q ss_pred CCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
+|...|..++ ..+.+ ..+.+++.| .++.+|++..... .....|...|..+..++||++.++++.|+.+++
T Consensus 13 gh~d~Vt~la--~~~~~~~~l~sasrD-k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 13 GHTDWVTALA--IKIKNSDILVSASRD-KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred CCCceEEEEE--eecCCCceEEEcccc-eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 4667788777 66664 455566666 9999999875432 233458899999999999999999999999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++.. .......-..+...|.+++|+|+
T Consensus 90 WDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g----------~ck~t~~~~~~~~WVscvrfsP~ 159 (315)
T KOG0279|consen 90 WDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----------VCKYTIHEDSHREWVSCVRFSPN 159 (315)
T ss_pred EEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc----------cEEEEEecCCCcCcEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999843 12222222234789999999999
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
..+.+|++++.|++|++||+++.+....+. |.+.++.++++|||...++|+.||.+.+||++..+ .+. .
T Consensus 160 ~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k---------~ly-s 229 (315)
T KOG0279|consen 160 ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK---------NLY-S 229 (315)
T ss_pred CCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc---------eeE-e
Confidence 766899999999999999999998888777 88999999999999999999999999999999874 233 3
Q ss_pred ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC---------CCCeeEEEEEecCceeeeccCCCCccc
Q 012996 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA---------KGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
.+|...|.+++|+|.++.+++..+..|+|||+.++.++.+++.. .-....++|++||..|++|-.|+.|++
T Consensus 230 l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv 309 (315)
T KOG0279|consen 230 LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV 309 (315)
T ss_pred ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence 46889999999999777667777777999999999988876521 123567899999999999999999999
Q ss_pred cccC
Q 012996 337 SRRH 340 (451)
Q Consensus 337 w~~~ 340 (451)
|.+.
T Consensus 310 ~qv~ 313 (315)
T KOG0279|consen 310 WQVA 313 (315)
T ss_pred EEee
Confidence 9864
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.9e-44 Score=297.33 Aligned_cols=279 Identities=20% Similarity=0.299 Sum_probs=246.9
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
..|..+. |.|+|+.|++|+.. |.+.+|+...-... +...|..+|+++.|++++.++++|..+|.|++|+..-....
T Consensus 97 c~V~~v~--WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVR--WTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEE--EcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 3456666 99999999999998 99999997543332 44568999999999999999999999999999997554443
Q ss_pred eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (451)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~ 195 (451)
.....|...|++++|+|++..|++++.||+|+|||... ......+.+|.-.|.+++|+|.. .+++++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----------~kee~vL~GHgwdVksvdWHP~k--gLiasg 240 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----------PKEERVLRGHGWDVKSVDWHPTK--GLIASG 240 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----------CchhheeccCCCCcceeccCCcc--ceeEEc
Confidence 33344559999999999999999999999999999954 33445679999999999999988 899999
Q ss_pred eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996 196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (451)
Q Consensus 196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (451)
+.|..|++||.++++++.++. |...|..+.|+|++++|++++.|..+++||+++. +.+..+++|...|++
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTS 311 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhhee
Confidence 999999999999999999887 8899999999999999999999999999999964 567889999999999
Q ss_pred EEEec--CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 275 LAYST--GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 275 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+.|+| .++|.+|+.||.|..|.+...+++..+. +|.+.|++++|+|-|..|++|+.|.++++|...
T Consensus 312 ~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999 8999999999999999998777777665 789999999999999999999999999999865
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-41 Score=288.09 Aligned_cols=310 Identities=22% Similarity=0.373 Sum_probs=274.1
Q ss_pred EEEeecCCCCCCeEEEECcc----CceeeeeecC------C-CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996 3 LLIASSSVADTGIGCWDLES----GAEQLRYKSC------A-SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~----~~~~~~~~~~------~-~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~ 71 (451)
-++|+++ .|-+.++|++.. +.....++.. . .....|++++ |+.+|..||+|..+ |.+++|+....
T Consensus 192 ~llasg~-~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~--Wn~~G~~LatG~~~-G~~riw~~~G~ 267 (524)
T KOG0273|consen 192 GLLASGS-GDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLD--WNNDGTLLATGSED-GEARIWNKDGN 267 (524)
T ss_pred hhhhccC-CccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEE--ecCCCCeEEEeecC-cEEEEEecCch
Confidence 3678888 999999999874 1111112111 1 1236799999 99999999999999 99999999988
Q ss_pred ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 72 QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 72 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
.......|.++|.++.|+.+|+||++++.|+++.+||..+++....+.-|..+-.++.|-.+ ..|++++.||.|+|+.+
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv 346 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKV 346 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEe
Confidence 88888889999999999999999999999999999999999999999999988788999765 45899999999999999
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE 230 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~ 230 (451)
....++.++.+|.+.|.++.|.|.+ .+|++++.|++++||..........+. |...|..+.|+|.+
T Consensus 347 -----------~~~~P~~t~~GH~g~V~alk~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 347 -----------GEDRPVKTFIGHHGEVNALKWNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred -----------cCCCcceeeecccCceEEEEECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 5567888999999999999999998 899999999999999998888887777 88899999999854
Q ss_pred ---------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 231 ---------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 231 ---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
..+++++.|+.|++||+..+ .++..+..|..+|++++|+| +.++|+|+.||.|.+|++.++
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~g---------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESG---------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCC---------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch
Confidence 57899999999999999987 66888999999999999999 999999999999999999999
Q ss_pred ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+.++...+ .+.|..|+|+.+|.+|..+-.||.+++-+++
T Consensus 485 ~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 485 KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999987 5679999999999999999999999887753
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-41 Score=287.50 Aligned_cols=287 Identities=19% Similarity=0.332 Sum_probs=252.0
Q ss_pred CCCceEEecceEeeccC-cccCCCCCCccEEEEECCC------Cceeee---------ecCCCCeeEEEECCCCcEEEEe
Q 012996 35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSK------PQVEVK---------SLPAEPIKPIAANSHGTYIAGG 98 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~------~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~ 98 (451)
|...|.+.+ |.|... .+++++.+ -+.++|++.. .+..++ ......|++++|+.+|..||+|
T Consensus 177 ~~~~V~~~~--WnP~~~~llasg~~~-s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 177 HESEVFICA--WNPLRDGLLASGSGD-STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred CCCceEEEe--cCchhhhhhhccCCc-cceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 667789999 999888 77777777 9999999864 111111 1124689999999999999999
Q ss_pred ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
+.||.+++|+ .+|.++.++..|.++|.++.|+..|.+|++++.|+++.+||..+ ......+.-|..+-
T Consensus 254 ~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~-----------g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 254 SEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-----------GTVKQQFEFHSAPA 321 (524)
T ss_pred ecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC-----------ceEEEeeeeccCCc
Confidence 9999999999 57889999999999999999999999999999999999999944 44566677788886
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
.++.|-.+ ..+++++.|+.|+++.+....++.++. |.+.|.++.|+|.+.+|++++.|++++||.....
T Consensus 322 lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~------- 391 (524)
T KOG0273|consen 322 LDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS------- 391 (524)
T ss_pred cceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC-------
Confidence 77888766 589999999999999999989988887 8999999999999999999999999999998775
Q ss_pred CceeeeeeccCCcceeEEEEec-C---------CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-G---------DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 327 (451)
.....+.+|...|+.+.|+| + ..+++++.|++|++||+..+.++.+|..|..||.+++|+|+|+|+|+
T Consensus 392 --~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAs 469 (524)
T KOG0273|consen 392 --NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLAS 469 (524)
T ss_pred --cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEe
Confidence 45668889999999999988 4 37999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccccccCCCCCCCcc
Q 012996 328 GSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 328 ~s~d~~i~iw~~~~~~~~~~~ 348 (451)
|+.||.|.+|+.+...+....
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred cCCCCeeEeccccchheeEee
Confidence 999999999999977665543
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-40 Score=285.26 Aligned_cols=324 Identities=19% Similarity=0.297 Sum_probs=252.0
Q ss_pred EEEeecCCCCCCeEEEECccCcee--eeeecCCCCCCceEEecceEeeccCcccCCCCCC---ccEEEEECCC-------
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQ--LRYKSCASPPHGLACVGQRFLASSQLREQPSASS---GSILYWSWSK------- 70 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~---g~i~vw~~~~------- 70 (451)
.++|+|. ..|.|||||....+.+ .+++...++ |..++ |+.+++.+++.|..- |.+.+||..+
T Consensus 72 ~yiASGD-~sG~vRIWdtt~~~hiLKnef~v~aG~---I~Di~--Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~G 145 (603)
T KOG0318|consen 72 FYIASGD-VSGKVRIWDTTQKEHILKNEFQVLAGP---IKDIS--WDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITG 145 (603)
T ss_pred eEEeecC-CcCcEEEEeccCcceeeeeeeeecccc---cccce--eCCCCcEEEEEecCccceeEEEEecCCCccceeec
Confidence 4899999 9999999997653332 234433333 33444 666666666655421 3455555321
Q ss_pred ----------------------------------Cceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 71 ----------------------------------PQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 71 ----------------------------------~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
-+... ...|..-|.|+.|+|||.++|+++.||.|.+||-.+|+.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 11111 1126678999999999999999999999999999999999
Q ss_pred eeec---cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh--------------------------------
Q 012996 116 KKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES-------------------------------- 160 (451)
Q Consensus 116 ~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-------------------------------- 160 (451)
..+. +|.+.|.+++|+||++.|+|++.|.+++|||+.+.......
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 9997 89999999999999999999999999999999764321110
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-----------ee-cc----------
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-----------IV-FP---------- 218 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-----------~~-~~---------- 218 (451)
.......+..+.+|...|+++..++++ .+|++|+.||.|.-||..++..-+. +. ..
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~--~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D 383 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDG--KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD 383 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCC--CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC
Confidence 012223567788999999999999998 8999999999999999865432211 00 00
Q ss_pred ------------------------------------------------------------cceeEEEECCCCCEEEEEeC
Q 012996 219 ------------------------------------------------------------SVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 219 ------------------------------------------------------------~~i~~~~~~~~~~~l~~~~~ 238 (451)
....+++++|++..+++|+.
T Consensus 384 d~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~ 463 (603)
T KOG0318|consen 384 DTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ 463 (603)
T ss_pred CeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc
Confidence 03567899999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-EeecCCCCeeEE
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNI 316 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l 316 (451)
||.+++|.+..... ........|.++|+++++|| +.+||+|...+.+.+||+.+.+... .+..|.+.|.++
T Consensus 464 Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~ 536 (603)
T KOG0318|consen 464 DGKVHVYSLSGDEL-------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV 536 (603)
T ss_pred cceEEEEEecCCcc-------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE
Confidence 99999999988642 23345667999999999999 9999999999999999999887633 345699999999
Q ss_pred EEEecCceeeeccCCCCccccccCC
Q 012996 317 LVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 317 ~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+|+|+..++|+||.|..|.||++..
T Consensus 537 aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 537 AWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred EeCCCceEEEeccccceEEEEEccC
Confidence 9999999999999999999999874
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=266.52 Aligned_cols=264 Identities=20% Similarity=0.323 Sum_probs=238.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--c-----eee
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-----VEV 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~-----~~~ 75 (451)
..|++++ .||.+.|||.-|...+..+.. +...|..++ |+|.|+++|+||.| +...||++.+. + ...
T Consensus 68 r~ivSaS-qDGklIvWDs~TtnK~haipl---~s~WVMtCA--~sPSg~~VAcGGLd-N~Csiy~ls~~d~~g~~~v~r~ 140 (343)
T KOG0286|consen 68 RRIVSAS-QDGKLIVWDSFTTNKVHAIPL---PSSWVMTCA--YSPSGNFVACGGLD-NKCSIYPLSTRDAEGNVRVSRE 140 (343)
T ss_pred CeEEeec-cCCeEEEEEcccccceeEEec---CceeEEEEE--ECCCCCeEEecCcC-ceeEEEecccccccccceeeee
Confidence 4688999 999999999998888877754 446677777 99999999999999 99999999854 2 123
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcch
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
...|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++.
T Consensus 141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~- 218 (343)
T KOG0286|consen 141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS- 218 (343)
T ss_pred ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-
Confidence 456899999999988 45688999999999999999999999999999999999999 999999999999999999954
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH 231 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~ 231 (451)
..+.++|.+|...|++++|.|+| .-+++|+.|+++++||++..+.+..+.+ ..+|++++|+..|+
T Consensus 219 ----------~~c~qtF~ghesDINsv~ffP~G--~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 219 ----------GQCVQTFEGHESDINSVRFFPSG--DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred ----------cceeEeecccccccceEEEccCC--CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 56889999999999999999999 8999999999999999999999888875 45799999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
+|++|..|..+.+||.-.+ +.+..+.+|...|+++..+| |.-+++|+.|.+++||.
T Consensus 287 lLfagy~d~~c~vWDtlk~---------e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKG---------ERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeecccc---------ceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999999999998776 55778999999999999999 99999999999999994
No 16
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=268.80 Aligned_cols=308 Identities=21% Similarity=0.307 Sum_probs=265.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~ 81 (451)
.++|||+ .|..-.||++.+|.....+. +|...|+++. |+.+|.+||+|+.+ |.|+||...++....... .-+
T Consensus 77 ~l~aTGG-gDD~AflW~~~~ge~~~elt---gHKDSVt~~~--FshdgtlLATGdms-G~v~v~~~stg~~~~~~~~e~~ 149 (399)
T KOG0296|consen 77 NLVATGG-GDDLAFLWDISTGEFAGELT---GHKDSVTCCS--FSHDGTLLATGDMS-GKVLVFKVSTGGEQWKLDQEVE 149 (399)
T ss_pred ceEEecC-CCceEEEEEccCCcceeEec---CCCCceEEEE--EccCceEEEecCCC-ccEEEEEcccCceEEEeecccC
Confidence 4789999 99999999999999877665 4668899999 99999999999999 999999999888776654 567
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.+.-+.|+|.+..|+.|+.||.+.+|.+.+....+.+.+|..++++-.|.|+|+.++++..||+|++|++.++
T Consensus 150 dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg------- 222 (399)
T KOG0296|consen 150 DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTG------- 222 (399)
T ss_pred ceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCC-------
Confidence 8889999999999999999999999999998888999999999999999999999999999999999999663
Q ss_pred cccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---------cccc---eeEEEECC
Q 012996 162 RASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSV---IDAIALDP 228 (451)
Q Consensus 162 ~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~---i~~~~~~~ 228 (451)
.+++.... ......++.++..+ ..++.|+.++.+++-+..+++.+...+ +... |.++.++.
T Consensus 223 ----~p~~~~~~~e~~~~~~~~~~~~~--~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 223 ----QPLHKITQAEGLELPCISLNLAG--STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred ----ceeEEecccccCcCCcccccccc--ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 33333331 23445677777776 789999999999999988888776654 2233 44444555
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 308 (451)
.=.+.|+|+-||+|.|||+.... ++....|..+|+.+.|-+..+|++++.||.|+.||.++|+++.++.+
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~----------~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAAST----------LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred ccchhhcccccceEEEEecccch----------hheeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEec
Confidence 66788999999999999998854 44556788999999999878999999999999999999999999999
Q ss_pred CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|..+|.+++.+|+.++++|+|.|++.+++++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999998754
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=290.53 Aligned_cols=316 Identities=20% Similarity=0.319 Sum_probs=270.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||+|- ..|...+|.+..-..++.+.... ..|..+. |+..|.++|.++..=|.+.||++.......+ ..|..
T Consensus 278 ~~lvvgF-ssG~f~LyelP~f~lih~LSis~---~~I~t~~--~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~ 351 (893)
T KOG0291|consen 278 NLLVVGF-SSGEFGLYELPDFNLIHSLSISD---QKILTVS--FNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD 351 (893)
T ss_pred eEEEEEe-cCCeeEEEecCCceEEEEeeccc---ceeeEEE--ecccCCEEEEcCCccceEEEEEeeccceeeecccccc
Confidence 5789999 99999999999999998886543 5566666 9999999999988668999999998887665 45889
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.+++++++|||+++|+|+.||.|+|||..++-|..+|..|...|+.+.|+..++.+++++.||+|+.||+..
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-------- 423 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-------- 423 (893)
T ss_pred ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999943
Q ss_pred cccccceecccCC-cCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996 162 RASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 162 ~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
....+++... +....+++..|.| .+++.|+.|. .|.+|++.+|+.+..+. |.++|.+++|+|.+..|++++.
T Consensus 424 ---YrNfRTft~P~p~QfscvavD~sG--elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 424 ---YRNFRTFTSPEPIQFSCVAVDPSG--ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred ---cceeeeecCCCceeeeEEEEcCCC--CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 4445555432 3345666776766 7888888876 59999999999999988 9999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---------
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------- 308 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------- 308 (451)
|.+|++||+-... ..+.++ .+...+..++|+| |.-|+++..||.|.+||+..+..+..+.+
T Consensus 499 DkTVRiW~if~s~--------~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 499 DKTVRIWDIFSSS--------GTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred cceEEEEEeeccC--------ceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 9999999997753 122233 4678899999999 99999999999999999987766544431
Q ss_pred -----------CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 309 -----------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 309 -----------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
...+.+.+++|+||.++++|+..+.|++|++..+.+.+
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 22479999999999999999999999999998776543
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-39 Score=257.41 Aligned_cols=272 Identities=22% Similarity=0.370 Sum_probs=226.1
Q ss_pred EEeecCCCCCCeEEEECc-----cCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-ee
Q 012996 4 LIASSSVADTGIGCWDLE-----SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~ 77 (451)
++.+++ .|.++.+|++. .|..++.+.+ |.+.|..+. .+++|++.++++.| +++++||+.+++... ..
T Consensus 30 ~l~sas-rDk~ii~W~L~~dd~~~G~~~r~~~G---HsH~v~dv~--~s~dg~~alS~swD-~~lrlWDl~~g~~t~~f~ 102 (315)
T KOG0279|consen 30 ILVSAS-RDKTIIVWKLTSDDIKYGVPVRRLTG---HSHFVSDVV--LSSDGNFALSASWD-GTLRLWDLATGESTRRFV 102 (315)
T ss_pred eEEEcc-cceEEEEEEeccCccccCceeeeeec---cceEecceE--EccCCceEEecccc-ceEEEEEecCCcEEEEEE
Confidence 577888 99999999875 5666777766 556677777 99999999999999 999999999876554 45
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc--cCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSED--GSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~ 153 (451)
.|...|.+++|+||.+.+++|+.|.+|++|++. +.+..++..+ .+.|+|+.|+|+ ..+|++++.|++|++||++
T Consensus 103 GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~- 180 (315)
T KOG0279|consen 103 GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR- 180 (315)
T ss_pred ecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC-
Confidence 699999999999999999999999999999975 4555555433 789999999997 7899999999999999994
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (451)
..+....+.+|++.++.++++|+| .++++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|
T Consensus 181 ----------~~~l~~~~~gh~~~v~t~~vSpDG--slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL 248 (315)
T KOG0279|consen 181 ----------NCQLRTTFIGHSGYVNTVTVSPDG--SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWL 248 (315)
T ss_pred ----------CcchhhccccccccEEEEEECCCC--CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeE
Confidence 466778899999999999999999 89999999999999999999999999999999999999998888
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeee-eeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
+.+... .|+|||+.+........ ..... ..........+++|++ |..|++|..|+.|++|.+.
T Consensus 249 ~~at~~-sIkIwdl~~~~~v~~l~-~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 249 CAATAT-SIKIWDLESKAVVEELK-LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeccCC-ceEEEeccchhhhhhcc-ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 777654 49999998865322110 01111 1222234556789999 9999999999999999875
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.8e-40 Score=295.34 Aligned_cols=268 Identities=22% Similarity=0.417 Sum_probs=238.5
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------------------------------eeeeecCCCCe
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------------------------------VEVKSLPAEPI 83 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------------------------------~~~~~~~~~~v 83 (451)
...+.|.. |++++..+|.|-.| ..|++|.+...+ ......|.++|
T Consensus 378 ~~~v~ca~--fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 378 YQGVTCAE--FSDDSSMLACGFVD-SSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred CCcceeEe--ecCCcchhhccccc-cEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 36688888 99999988887777 999999887311 11234589999
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
..+.|+|+.++|++++.|+++++|.+.+..++..+++|..+|+++.|+|.|-+|+|++.|++.++|.. .
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~-----------d 523 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST-----------D 523 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec-----------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (451)
...+++.+.+|-..|.|+.|+|+. +++++||.|.+|++||+.+|..++.|. |.++|.+++|+|+|++|++|+.||.|
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred cCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 567888999999999999999999 899999999999999999999999998 99999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc--------------------
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-------------------- 301 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-------------------- 301 (451)
.+||+.++ ..+..+.+|.+.|+++.|+. |..||+|+.|.+|++||+..-.
T Consensus 602 ~iWDl~~~---------~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 602 KIWDLANG---------SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred EEEEcCCC---------cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 99999997 55778999999999999999 9999999999999999975422
Q ss_pred ----eEEEeecCCCCeeEEEEEecCceeeec
Q 012996 302 ----IVRMFRLAKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 302 ----~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (451)
++..+.....+|.+|.|...+..|+.|
T Consensus 673 ~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 344555556688888888877666655
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.5e-40 Score=269.22 Aligned_cols=284 Identities=19% Similarity=0.366 Sum_probs=256.0
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
..+|-+.|.|++ +-|...++++++.| ++++|||+.++++.... .|-+.|..+++|+-..|+++++.|+.|+.||+.
T Consensus 147 i~gHlgWVr~va--vdP~n~wf~tgs~D-rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 147 ISGHLGWVRSVA--VDPGNEWFATGSAD-RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhccceEEEEe--eCCCceeEEecCCC-ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 346778999999 99999999999999 99999999999987664 488999999999999999999999999999999
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
..+.++.+.+|-..|.|++.+|.-..|++|+.|.+++|||+++ ...+..+.+|..+|.++.+.+.. .
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-----------r~~V~~l~GH~~~V~~V~~~~~d--p 290 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-----------RASVHVLSGHTNPVASVMCQPTD--P 290 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-----------cceEEEecCCCCcceeEEeecCC--C
Confidence 9999999999999999999999989999999999999999966 55688999999999999998766 6
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
.+++|+.|++|++||++.|+....+. |...+.+++.+|....|++++.| .|+.|++..+ ..+..+.+|.
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~ 360 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHN 360 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCcc---------chhhcccccc
Confidence 89999999999999999998887776 78899999999999999998876 4899999887 4456688999
Q ss_pred cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec--------CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 270 KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 270 ~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
..|++++.+...++++|+.+|.+.+||.++|...+.+.. ....|.+.+|...|..|++|..|.+|++|+-..
T Consensus 361 ~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 361 AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 999999998889999999999999999999876665421 234689999999999999999999999998653
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-40 Score=299.88 Aligned_cols=242 Identities=25% Similarity=0.386 Sum_probs=223.9
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-------------------------------cceeeeccccCCeeEE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------------------------------RLLKKWHAHYRAVTCL 128 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------------------------------~~~~~~~~~~~~v~~~ 128 (451)
...++|..|++|+++||.|..|..|++|.+... ....++.+|.++|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 568999999999999999999999999988631 1123466899999999
Q ss_pred EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
.|+|+.++|++++.|+++++|.+.+ ..++..+.+|..+|+.+.|+|.| -+++|++.|++.++|....
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t-----------~s~~V~y~GH~~PVwdV~F~P~G--yYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDT-----------WSCLVIYKGHLAPVWDVQFAPRG--YYFATASHDQTARLWSTDH 524 (707)
T ss_pred eecccccceeeccCCcceeeeeccc-----------ceeEEEecCCCcceeeEEecCCc--eEEEecCCCceeeeeeccc
Confidence 9999999999999999999999954 66777888999999999999988 8999999999999999999
Q ss_pred Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996 209 GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (451)
Q Consensus 209 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~ 286 (451)
..+.+.+. |-+.+.|+.|+|+..|+++|+.|.++++||..++ ..+..+.||.++|++++||| |.+|++|
T Consensus 525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---------~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG---------NSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC---------cEEEEecCCCCceEEEEEcCCCceEeec
Confidence 99988887 8899999999999999999999999999999998 45888999999999999999 9999999
Q ss_pred cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 287 SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 287 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+.||.|.+||+.++.++..+.+|.+.|.++.||.||..||+|+.|+.|++||+....
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999999999999999999999999999999999999999999987543
No 22
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-40 Score=270.04 Aligned_cols=281 Identities=21% Similarity=0.326 Sum_probs=256.4
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS- 111 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 111 (451)
++...|+.+- |+|+-...++++.| ++|++||..++++.. ...|.+.|..|+|+..|+++++++.|=.+++||..+
T Consensus 106 g~r~~vt~v~--~hp~~~~v~~as~d-~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 106 GHRSSVTRVI--FHPSEALVVSASED-ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred ccccceeeee--eccCceEEEEecCC-ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 3556677777 99999999988888 999999999998743 356888899999999999999999998899999876
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
.++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+ .-++.++.+|...|..++.+.+| .+
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-----------g~cv~t~~~h~ewvr~v~v~~DG--ti 249 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-----------GYCVKTFPGHSEWVRMVRVNQDG--TI 249 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-----------ceeEEeccCchHhEEEEEecCCe--eE
Confidence 577888899999999999999999999999999999999955 56789999999999999988888 89
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC---------------CCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA---------------EHVFYAGSRDGSIYIAALNAESPSTS 255 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (451)
+++++.|.++++|-+.++++...+. |..+|.+++|.|. +.++.+++.|++|++||+.++
T Consensus 250 ~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----- 324 (406)
T KOG0295|consen 250 IASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----- 324 (406)
T ss_pred EEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----
Confidence 9999999999999999998877776 8889999999763 258999999999999999997
Q ss_pred CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996 256 SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPH 334 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i 334 (451)
.++.++.+|...|..++|+| |+||+++..|+++++||++++++++++..|..-|+++.|+.+..++++|+-|.++
T Consensus 325 ----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~ 400 (406)
T KOG0295|consen 325 ----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTV 400 (406)
T ss_pred ----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccccee
Confidence 77889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 012996 335 TSSRR 339 (451)
Q Consensus 335 ~iw~~ 339 (451)
++|..
T Consensus 401 KvwEc 405 (406)
T KOG0295|consen 401 KVWEC 405 (406)
T ss_pred eeeec
Confidence 99963
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-38 Score=252.35 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=240.3
Q ss_pred ecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCC-Cceeee----ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 30 KSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK-PQVEVK----SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~-~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
+.+.+|...+..++ |+|. |..||++|.| ..|++|+... .....+ ..|...|++++|+|.|++||+|+.|++
T Consensus 8 ~~~~gh~~r~W~~a--whp~~g~ilAscg~D-k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVA--WHPGKGVILASCGTD-KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred EeecCCCCcEEEEE--eccCCceEEEeecCC-ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 34445667899999 9999 8899999998 9999999884 333322 348899999999999999999999999
Q ss_pred EEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 104 IYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 104 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
+.||.-..+ +++.++.+|...|.|++|+++|++||+++.|..|-||.+.. .....+...+.+|+..|..+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de--------ddEfec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE--------DDEFECIAVLQEHTQDVKHV 156 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC--------CCcEEEEeeeccccccccEE
Confidence 999987654 67888999999999999999999999999999999999864 24566788899999999999
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcCC---Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLLK---GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
.|+|.. .+|++++.|.+|++|+-.. -.+..++. +...|.+++|+|.|..|++++.|+.++||.....-
T Consensus 157 ~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------ 228 (312)
T KOG0645|consen 157 IWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------ 228 (312)
T ss_pred EEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc------
Confidence 999988 7999999999999998662 35677776 67799999999999999999999999999866431
Q ss_pred CceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCC------ceEE-EeecCCCCeeEEEEEec-Cceeeecc
Q 012996 258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITH------NIVR-MFRLAKGPVNNILVVRR-PLYLNLGS 329 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~-~~~~~~~~v~~l~~s~~-~~~l~~~s 329 (451)
-..|..+++.+.|. ...|++++.|+.|++|.-... +.+. .-..|...|++++|.|. ..+|++++
T Consensus 229 -------~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 229 -------SGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -------chhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 12377899999998 789999999999999976542 1122 33467889999999994 78999999
Q ss_pred CCCCccccccC
Q 012996 330 FSNPHTSSRRH 340 (451)
Q Consensus 330 ~d~~i~iw~~~ 340 (451)
.||.+++|.+.
T Consensus 301 DDG~v~~W~l~ 311 (312)
T KOG0645|consen 301 DDGIVNFWELE 311 (312)
T ss_pred CCceEEEEEec
Confidence 99999999864
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=284.05 Aligned_cols=282 Identities=26% Similarity=0.428 Sum_probs=251.3
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccC-CCEEEEEcCCCcc
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVASGRL 114 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 114 (451)
..+++.+ |++....||++-.. |...+|.+..-.+... .....+|..++|+..|.+||.|+.. |.+.||+..+...
T Consensus 266 ~kvtaa~--fH~~t~~lvvgFss-G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY 342 (893)
T KOG0291|consen 266 SKVTAAA--FHKGTNLLVVGFSS-GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY 342 (893)
T ss_pred cceeeee--ccCCceEEEEEecC-CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce
Confidence 5677777 99999999988887 9999999987766544 3456899999999999999998765 8899999999999
Q ss_pred eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
+...++|...+++++++|||+++++|+.||.|+|||. ...-+..+|..|+..|+.+.|+..+ +.+++
T Consensus 343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-----------~SgfC~vTFteHts~Vt~v~f~~~g--~~lls 409 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNT-----------QSGFCFVTFTEHTSGVTAVQFTARG--NVLLS 409 (893)
T ss_pred eeeccccccceeeEEECCCCcEEEeccCCCcEEEEec-----------cCceEEEEeccCCCceEEEEEEecC--CEEEE
Confidence 9999999999999999999999999999999999999 4566899999999999999999998 89999
Q ss_pred eeCCCcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
++.||+|+.||+...+..+++..+. ...|++.+|.|..+++|+.|. .|++|++.++ +.+-.+.||.++
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---------qllDiLsGHEgP 480 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---------QLLDILSGHEGP 480 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---------eeeehhcCCCCc
Confidence 9999999999999999999998554 467888999999999999887 6999999998 678899999999
Q ss_pred eeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
|.+++|+| +..|++||.|.+|++||+-... .+.++. +...+..++|+|+|+.||+++.||.|.+||......
T Consensus 481 Vs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 481 VSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 99999999 9999999999999999986553 444454 467899999999999999999999999999875543
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-37 Score=268.61 Aligned_cols=320 Identities=15% Similarity=0.216 Sum_probs=254.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee----c
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----L 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~ 78 (451)
..++||+ .|++|.+|+=..-+...+++ .|..-|.|+. |+|||..+|+++.| |+|.+||-.+++..... .
T Consensus 161 fRi~T~s-dDn~v~ffeGPPFKFk~s~r---~HskFV~~VR--ysPDG~~Fat~gsD-gki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 161 FRIATGS-DDNTVAFFEGPPFKFKSSFR---EHSKFVNCVR--YSPDGSRFATAGSD-GKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred eEEEecc-CCCeEEEeeCCCeeeeeccc---ccccceeeEE--ECCCCCeEEEecCC-ccEEEEcCCCccEEEEecCCCC
Confidence 4689999 99999999855444444444 4557788888 99999999999999 99999999888765433 5
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-----------------------------------------
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----------------------------------------- 117 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------- 117 (451)
|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.+
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChh
Confidence 899999999999999999999999999999976544433
Q ss_pred --eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc---------------------------------
Q 012996 118 --WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR--------------------------------- 162 (451)
Q Consensus 118 --~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------------------------- 162 (451)
+.+|...|+++..+|++++|++|+.||.|.-|+..++........
T Consensus 314 ~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 314 KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 337999999999999999999999999999999866533211000
Q ss_pred ----------ccccc-------------------eecccCC--------cCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996 163 ----------ASHLY-------------------LHSFTGH--------TLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (451)
Q Consensus 163 ----------~~~~~-------------------~~~~~~~--------~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd 205 (451)
-..++ +..+..+ .-...+++++|++ ..++.|+.|+.|++|.
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--SEVAVGGQDGKVHVYS 471 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--CEEEEecccceEEEEE
Confidence 00000 0000111 1123567788888 8999999999999999
Q ss_pred cCCCcee---eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996 206 LLKGRLL---RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (451)
Q Consensus 206 ~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 281 (451)
+...... ....|.++|++++++|++.+|++|...+.+.+||..+... ......-|...|.+++|+| ..
T Consensus 472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--------~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--------KTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--------ecceeeeeeeeEEEEEeCCCce
Confidence 9875543 3445899999999999999999999999999999998752 2334555999999999999 99
Q ss_pred EEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 282 LLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 282 ~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
++|+|+-|-.|.||++.... .+.....|...|+.+.|-.+ ..+++++.|-.|++|++.
T Consensus 544 ~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEeccccceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcceeEEeccc
Confidence 99999999999999998754 34445578888999999865 578999999999999864
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-39 Score=264.61 Aligned_cols=269 Identities=22% Similarity=0.330 Sum_probs=242.1
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--eeeecC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLP 79 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~~~~~ 79 (451)
+.++++++ .|++|++||..+|+....+++|. .++..+. |+..|+++|+++.| -.+.+||.++... .....|
T Consensus 120 ~~~v~~as-~d~tikv~D~~tg~~e~~LrGHt---~sv~di~--~~a~Gk~l~tcSsD-l~~~LWd~~~~~~c~ks~~gh 192 (406)
T KOG0295|consen 120 EALVVSAS-EDATIKVFDTETGELERSLRGHT---DSVFDIS--FDASGKYLATCSSD-LSAKLWDFDTFFRCIKSLIGH 192 (406)
T ss_pred ceEEEEec-CCceEEEEEccchhhhhhhhccc---cceeEEE--EecCccEEEecCCc-cchhheeHHHHHHHHHHhcCc
Confidence 35788898 99999999999999998888766 4577777 99999999999998 6699999986433 234568
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|.++.|-|.|.++++++.|.+|+.|++.+|.++.++.+|...|..++.+.||.++++++.|.+|++|-+.+
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t------ 266 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT------ 266 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc------
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999944
Q ss_pred hhcccccceecccCCcCceeEEEEeecC-------------CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGG-------------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~-------------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (451)
..+...+..|..+|.+++|.|.. .+.++.+++.|++|++||+.++.++.++. |...|..++
T Consensus 267 -----~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~a 341 (406)
T KOG0295|consen 267 -----KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVA 341 (406)
T ss_pred -----chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeE
Confidence 55667788999999999996632 12589999999999999999999999988 899999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
|+|.|+||+++.+|+++++||+++. ++...+..|..-|+++.|+. ..++++|+-|.++++|..
T Consensus 342 f~p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 342 FSPGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EcCCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999997 56778889999999999998 889999999999999974
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=285.72 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=270.7
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANS 90 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~ 90 (451)
.|..+.++|.++.+..+.+-+... .|..+. .+-|..+++|+++.. +.+++|+..+..+.+...|.+.|.+++...
T Consensus 301 aeQnl~l~d~~~l~i~k~ivG~nd---EI~Dm~-~lG~e~~~laVATNs-~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 301 AEQNLFLYDEDELTIVKQIVGYND---EILDMK-FLGPEESHLAVATNS-PELRLYTLPTSYCQIIPGHTEAVLSLDVWS 375 (775)
T ss_pred ccceEEEEEccccEEehhhcCCch---hheeee-ecCCccceEEEEeCC-CceEEEecCCCceEEEeCchhheeeeeecc
Confidence 468899999999999888876553 444444 133788999999988 999999999999999999999999999767
Q ss_pred CCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 91 HGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
+|-+|++|+.|.++++|.++++ .++....+|...|.+++++.. ..+|+++|.|+++++|++....+... ....
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~ 453 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVL 453 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--ccee
Confidence 7889999999999999988544 344566899999999999763 46899999999999999965211111 1111
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
....+-..|...|++++++|+. .+++|||.|++.+||++........+. |...+.++.|+|..+.+++++.|++|+|
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~nd--kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPND--KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred hhhHHHHhhcccccceEecCCC--ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 1222446799999999999998 899999999999999999888888888 8999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc
Q 012996 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL 323 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~ 323 (451)
|.+.+. .++.++.||...|..+.|-. +..|++++.||-|++|++.+++|+.++..|.+.|++++.+|.+.
T Consensus 532 W~is~f---------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 532 WSISTF---------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred EEeccc---------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccc
Confidence 999986 77899999999999999998 99999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCccccccCC
Q 012996 324 YLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~~~~ 341 (451)
+++||+.||.+.+|.-.+
T Consensus 603 ~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 603 MFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeEecCCCeEEEEeecCc
Confidence 999999999999998543
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-39 Score=269.00 Aligned_cols=286 Identities=15% Similarity=0.238 Sum_probs=243.3
Q ss_pred ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996 30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (451)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 105 (451)
+....|.+.|..+. ||++|++||+++.| .+..+|.+..... .....|..+|..+.||||.++|++++.+..+.
T Consensus 218 qil~~htdEVWfl~--FS~nGkyLAsaSkD-~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQ--FSHNGKYLASASKD-STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS 294 (519)
T ss_pred hhHhhCCCcEEEEE--EcCCCeeEeeccCC-ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence 34446778999999 99999999999999 9999999764332 12345889999999999999999999999999
Q ss_pred EEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC-cCceeEEEE
Q 012996 106 MWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVI 183 (451)
Q Consensus 106 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~ 183 (451)
+||+.+|.+...+. +|...+.+++|.|||..+++|+.|+.+..||+... ......+- ...|.++++
T Consensus 295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn------------~~~~W~gvr~~~v~dlai 362 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN------------ILGNWEGVRDPKVHDLAI 362 (519)
T ss_pred eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc------------hhhcccccccceeEEEEE
Confidence 99999999887774 45688999999999999999999999999999431 12223322 256899999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (451)
.++| .++++.+.|..|++++..+......+....+|++++++.+++++++.-.+..+++||+... ..+.
T Consensus 363 t~Dg--k~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---------~lv~ 431 (519)
T KOG0293|consen 363 TYDG--KYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---------KLVR 431 (519)
T ss_pred cCCC--cEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---------hHHH
Confidence 9999 8999999999999999988777767778899999999999999999999999999999964 5566
Q ss_pred eeccCCcc--eeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccc
Q 012996 264 SLSDHSKA--VTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 264 ~~~~~~~~--v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~ 338 (451)
.+.||... +-.-+|.- ..++++||.|+.|+||+..+++++.++.+|...|++++|+| +..++|+||+||+|+||.
T Consensus 432 kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 432 KYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred HhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 77788653 33345544 57999999999999999999999999999999999999999 567889999999999998
Q ss_pred cCC
Q 012996 339 RHG 341 (451)
Q Consensus 339 ~~~ 341 (451)
...
T Consensus 512 ~~~ 514 (519)
T KOG0293|consen 512 PSD 514 (519)
T ss_pred CCc
Confidence 663
No 29
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.2e-38 Score=290.58 Aligned_cols=281 Identities=27% Similarity=0.441 Sum_probs=247.7
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc-C
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-A 110 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~ 110 (451)
+...+.++. |+++|+.+++++.+ +.+++|+..... .... ..|...|.+++|+|++.++++++.|++|+|||+ .
T Consensus 158 ~~~sv~~~~--fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVD--FSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEE--EcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC
Confidence 357788888 99999999999888 999999996555 2222 468899999999999999999999999999999 5
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
.+..++++.+|...|++++|+|+++++++|+.|++|++||+++ ..+...+.+|...|++++|++++ .
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-----------~~~~~~l~~hs~~is~~~f~~d~--~ 301 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-----------GECVRKLKGHSDGISGLAFSPDG--N 301 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-----------CeEEEeeeccCCceEEEEECCCC--C
Confidence 5688999999999999999999999999999999999999954 66788999999999999999999 8
Q ss_pred EEEEeeCCCcEEEEEcCCCc--eeeeee-ccc--ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 191 TIVSASEDRTCKVWSLLKGR--LLRNIV-FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
+|++++.|+.|++||+.++. +...+. +.. .+++++|+|++.++++++.|+.+++||+... .....+
T Consensus 302 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---------~~~~~~ 372 (456)
T KOG0266|consen 302 LLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---------KSVGTY 372 (456)
T ss_pred EEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---------cceeee
Confidence 99999999999999999998 445554 222 6899999999999999999999999999986 445566
Q ss_pred ccCCcce---eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecCceeeecc--CCCCccccc
Q 012996 266 SDHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGS--FSNPHTSSR 338 (451)
Q Consensus 266 ~~~~~~v---~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~s--~d~~i~iw~ 338 (451)
.+|...+ .+...++ +.++++|+.|+.|.+||+.++..+..+.+| ...+..+.++|..+++++++ .|+.+++|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 373 TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6776643 3344456 999999999999999999999999999999 89999999999999999998 789999998
Q ss_pred cC
Q 012996 339 RH 340 (451)
Q Consensus 339 ~~ 340 (451)
..
T Consensus 453 ~~ 454 (456)
T KOG0266|consen 453 YD 454 (456)
T ss_pred CC
Confidence 65
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-37 Score=271.48 Aligned_cols=280 Identities=28% Similarity=0.493 Sum_probs=248.6
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
+|...|.++. |+|+++++++++.+ |.|.+|++.+.... ....|...+..+.|+|+++++++++.+|.|++|++.++
T Consensus 7 ~h~~~i~~~~--~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 7 GHTGGVTCVA--FSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred ccCCCEEEEE--EcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 4567899999 99999999999987 99999999876543 33457788899999999999999999999999999998
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+.+..+..|...|.++.|+++++++++++.||.|.+||+.+ ......+..|...+.++.|++++ .++
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l 150 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-----------GKCLTTLRGHTDWVNSVAFSPDG--TFV 150 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-----------cEEEEEeccCCCcEEEEEEcCcC--CEE
Confidence 88888999999999999999988888888899999999953 33455666889999999999986 788
Q ss_pred EEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
++++.++.|++||+++++....+. +...+.+++|+|+++.+++++.++.|++||++.. ..+..+..|...
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---------~~~~~~~~~~~~ 221 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---------KCLGTLRGHENG 221 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---------ceecchhhcCCc
Confidence 888889999999999888887776 5668999999999999999999999999999875 345566678889
Q ss_pred eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
+.++.|+| +.++++++.||.|++||+.+++.+..+..|...|.+++|+|++.+|++++.||.+++|+
T Consensus 222 i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999 88888888899999999999999999999999999999999999999999999999996
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=249.04 Aligned_cols=284 Identities=18% Similarity=0.288 Sum_probs=245.7
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV 109 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 109 (451)
..+|...|..+. |+|+|.++|++|.| ..|.+|++.... ......|.++|..+.|.+|++.+++++.|.+|+.||+
T Consensus 43 l~gh~geI~~~~--F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 43 LPGHKGEIYTIK--FHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred cCCCcceEEEEE--ECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 345777888888 99999999999999 999999965432 3344579999999999999999999999999999999
Q ss_pred CCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 110 ASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
++|+.++.+++|...|+.+.-+.-| .++.+++.||++++||+++ ...++++. ....++++.|...+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-----------k~~~~t~~-~kyqltAv~f~d~s- 186 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-----------KEAIKTFE-NKYQLTAVGFKDTS- 186 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-----------cchhhccc-cceeEEEEEecccc-
Confidence 9999999999999999999854433 5677899999999999965 22333332 45678899998887
Q ss_pred eeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996 189 SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (451)
..+++|+-|+.|++||++.+.....+. |...|+.+..+|+|.++.+-+.|.++++||++...+.. +++..+.+
T Consensus 187 -~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~-----R~v~if~g 260 (338)
T KOG0265|consen 187 -DQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQ-----RCVKIFQG 260 (338)
T ss_pred -cceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCC-----ceEEEeec
Confidence 799999999999999999999988888 88999999999999999999999999999998765432 44666666
Q ss_pred CCc----ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccc
Q 012996 268 HSK----AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (451)
Q Consensus 268 ~~~----~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw 337 (451)
|.. ....++|+| +..+.+|+.|..+++||..+...+..+.+|.+.|.+++|+|...+|.+++.|.+|++=
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 643 456689999 9999999999999999999999999999999999999999999999999999998763
No 32
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-37 Score=243.69 Aligned_cols=272 Identities=17% Similarity=0.346 Sum_probs=227.2
Q ss_pred EEEeecCCCCCCeEEEECccC---ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---ee
Q 012996 3 LLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---VK 76 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~~ 76 (451)
.+||||+ .|+.|++|++..+ .+...+ ..+|.+.|..++ |+|.|++||+++.| .++.||.-..+... ..
T Consensus 28 ~ilAscg-~Dk~vriw~~~~~~s~~ck~vl--d~~hkrsVRsvA--wsp~g~~La~aSFD-~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 28 VILASCG-TDKAVRIWSTSSGDSWTCKTVL--DDGHKRSVRSVA--WSPHGRYLASASFD-ATVVIWKKEDGEFECVATL 101 (312)
T ss_pred eEEEeec-CCceEEEEecCCCCcEEEEEec--cccchheeeeee--ecCCCcEEEEeecc-ceEEEeecCCCceeEEeee
Confidence 5799999 9999999998843 233333 237889999999 99999999999999 99999997766544 33
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
..|...|.|++|+++|++||+++.|..|.||.+..+ ++...++.|...|..+.|+|...+|++++.|.+|++|+-..
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC
Confidence 568999999999999999999999999999998754 56778899999999999999999999999999999998752
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (451)
.....+..++.+|...|.+++|.+.| ..|++++.|++++||-..+. ....|...++.+.|. ...|
T Consensus 182 --------dddW~c~~tl~g~~~TVW~~~F~~~G--~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~I 246 (312)
T KOG0645|consen 182 --------DDDWECVQTLDGHENTVWSLAFDNIG--SRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVI 246 (312)
T ss_pred --------CCCeeEEEEecCccceEEEEEecCCC--ceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccce
Confidence 25677899999999999999999988 89999999999999987622 112266789999998 7789
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceee-eeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~ 298 (451)
++++.|+.|++|.-.... .. ..+..+ ..-..|...|+++.|+| .+.|++|+.||.|++|.+.
T Consensus 247 aS~ggD~~i~lf~~s~~~-d~--p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 247 ASGGGDDAIRLFKESDSP-DE--PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EeccCCCEEEEEEecCCC-CC--chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999999999876421 11 112222 24456889999999999 8899999999999999864
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.1e-39 Score=267.80 Aligned_cols=267 Identities=20% Similarity=0.342 Sum_probs=234.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~ 81 (451)
..|++|+ ..|.+.+|+..+-.....++ .|...|.++. |+++|.+++++..+ |.|++|+.+-..+..... |.+
T Consensus 109 RRLltgs-~SGEFtLWNg~~fnFEtilQ---aHDs~Vr~m~--ws~~g~wmiSgD~g-G~iKyWqpnmnnVk~~~ahh~e 181 (464)
T KOG0284|consen 109 RRLLTGS-QSGEFTLWNGTSFNFETILQ---AHDSPVRTMK--WSHNGTWMISGDKG-GMIKYWQPNMNNVKIIQAHHAE 181 (464)
T ss_pred ceeEeec-ccccEEEecCceeeHHHHhh---hhcccceeEE--EccCCCEEEEcCCC-ceEEecccchhhhHHhhHhhhh
Confidence 4688899 99999999974433332334 4557777888 99999999999998 999999988666655544 559
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|...++++||.|..|++||.++
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-------- 253 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-------- 253 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC--------
Confidence 999999999999999999999999999999988889999999999999999999999999999999999955
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEeCC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRD 239 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~d 239 (451)
..++.++.+|+..|..+.|.+++ ++|+++|.|..++++|+++.+.+..+. |...+.++.|+| ...+|.+|+.|
T Consensus 254 ---g~cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 254 ---GSCLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred ---cchhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 56788899999999999999999 899999999999999999888888887 999999999999 67889999999
Q ss_pred CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
|.|..|.+....+ ....-.+|...|++++|+| |.+|++|+.|.++++|.-
T Consensus 329 gsvvh~~v~~~~p--------~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 329 GSVVHWVVGLEEP--------LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CceEEEecccccc--------ccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999985432 2233457999999999999 999999999999999974
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=259.73 Aligned_cols=283 Identities=19% Similarity=0.332 Sum_probs=243.6
Q ss_pred eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996 27 LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (451)
Q Consensus 27 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 105 (451)
.++........+|.|+. | |...+++|..| ++|+|||.++..+. ...+|.+.|.|+.|. .+.+++|+.|.+|+
T Consensus 188 ~rinc~Se~skgVYClQ--Y--DD~kiVSGlrD-nTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvr 260 (499)
T KOG0281|consen 188 QRINCRSENSKGVYCLQ--Y--DDEKIVSGLRD-NTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVR 260 (499)
T ss_pred eeecCCcccCCceEEEE--e--cchhhhccccc-CceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEE
Confidence 34444445567888877 4 66778888888 99999998877655 446799999999996 56999999999999
Q ss_pred EEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
|||+++++++.++-.|...|..+.|+ ..++++++.|.++.+||+... ....+.+.+.+|...|+.+.|+.
T Consensus 261 vWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sp--------s~it~rrVLvGHrAaVNvVdfd~ 330 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDFDD 330 (499)
T ss_pred EEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCc--------hHHHHHHHHhhhhhheeeecccc
Confidence 99999999999999999999999998 568999999999999999652 22345667889999999998854
Q ss_pred cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 186 GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 186 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
+++++++.|.+|++|++.+++.++.+. |...|.|+.+ .++++++|+.|.+|++||+..+ .++..
T Consensus 331 ----kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---------~cLRv 395 (499)
T KOG0281|consen 331 ----KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRV 395 (499)
T ss_pred ----ceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---------HHHHH
Confidence 699999999999999999999999998 8888888876 7899999999999999999987 66888
Q ss_pred eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 265 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
+.||..-|.++.|. ...+++|+.||+|++||+..+. ++.++..|.+.|..+.|. ...+++++.|.+|.
T Consensus 396 LeGHEeLvRciRFd-~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtIL 472 (499)
T KOG0281|consen 396 LEGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTIL 472 (499)
T ss_pred HhchHHhhhheeec-CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEE
Confidence 99999999999998 6889999999999999987654 455666789999999997 46799999999999
Q ss_pred ccccCCCCC
Q 012996 336 SSRRHGSQL 344 (451)
Q Consensus 336 iw~~~~~~~ 344 (451)
|||+....+
T Consensus 473 iWdFl~~~~ 481 (499)
T KOG0281|consen 473 IWDFLNGPP 481 (499)
T ss_pred EEEcCCCCc
Confidence 999876543
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.8e-36 Score=302.22 Aligned_cols=307 Identities=15% Similarity=0.197 Sum_probs=247.6
Q ss_pred CCCeEEEECccCceeeeeec--CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------eeeeecCCC
Q 012996 12 DTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAE 81 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------~~~~~~~~~ 81 (451)
+|.+++|+..+......++. ...|...|.+++ |+|+|+++|+++.| +.|+||+..... ......+..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~--fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIG--FDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEE--ECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEecccC
Confidence 56788898876665544432 234678899999 99999999999998 999999975321 111223456
Q ss_pred CeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.|.+++|+| ++.+|++++.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||.|++||+++
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~------ 607 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ------ 607 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC------
Confidence 899999987 578999999999999999999999999999999999999997 789999999999999999954
Q ss_pred hhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECCCCCEEEEE
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (451)
...+..+..+ ..+.++.|.+ ++ .++++|+.||.|++||+++.. .+..+. |...|.++.|. ++.+|+++
T Consensus 608 -----~~~~~~~~~~-~~v~~v~~~~~~g--~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 608 -----GVSIGTIKTK-ANICCVQFPSESG--RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred -----CcEEEEEecC-CCeEEEEEeCCCC--CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence 2234444433 5788898864 44 899999999999999998765 344443 78899999997 67899999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe---------
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--------- 306 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~--------- 306 (451)
+.|+.|++||++.... .....++..+.+|...+.+++|+| +.+|++|+.||.|++|+.....++..+
T Consensus 679 s~D~~ikiWd~~~~~~---~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 679 STDNTLKLWDLSMSIS---GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred ECCCEEEEEeCCCCcc---ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 9999999999975321 111245678889999999999999 999999999999999998766544322
Q ss_pred ----ecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 307 ----RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 307 ----~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
..|...|.+++|+|++..|++|+.||.|++|+.
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 234457999999999999999999999999984
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-37 Score=272.78 Aligned_cols=279 Identities=18% Similarity=0.311 Sum_probs=256.2
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 113 (451)
+...|.++. |+|....++++-.+ |.|.|||.++...... .....+|.+..|-+..+++++|+.|..|+||+..+++
T Consensus 12 rSdRVKsVd--~HPtePw~la~Lyn-G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e 88 (794)
T KOG0276|consen 12 RSDRVKSVD--FHPTEPWILAALYN-GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE 88 (794)
T ss_pred cCCceeeee--cCCCCceEEEeeec-CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce
Confidence 557788888 99999999999888 9999999988765433 3357799999999999999999999999999999999
Q ss_pred ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
.+..|.+|.+.|.+++.+|...+++|++.|-.|++||... ...+.+++.+|+..|.+++|.|... +.++
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----------~wa~~qtfeGH~HyVMqv~fnPkD~-ntFa 157 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----------EWACEQTFEGHEHYVMQVAFNPKDP-NTFA 157 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----------ceeeeeEEcCcceEEEEEEecCCCc-ccee
Confidence 9999999999999999999999999999999999999954 6778899999999999999999866 8999
Q ss_pred EeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
+++.|++|++|.+.+..+..++. |...|+|+++-+ +..+|++|++|..|++||..+. .++.++.||..
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~ 228 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTN 228 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------HHHHHhhcccc
Confidence 99999999999999998888888 899999999988 4579999999999999999986 67889999999
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
.|..+.|+| -..+++|+.||+++||+..+-+...++......|++++-.+.+..++.|.+.|.+.+
T Consensus 229 Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 229 NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999 999999999999999999999999999888889999999999989999988887755
No 37
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=254.70 Aligned_cols=255 Identities=18% Similarity=0.288 Sum_probs=234.6
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 156 (451)
..|.+.|.|+++.|.+.+|++|+.|++|+|||+.+|++..++.+|-..|..+++++-..|+++++.|+.|+.||+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL----- 222 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL----- 222 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec-----
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEE
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (451)
.....++.+.+|-..|.+++.+|.- ..|++|+.|.++++||+++...+..+. |..+|.++.+.|-...+++
T Consensus 223 ------e~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 223 ------EYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred ------hhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE
Confidence 4567889999999999999999987 899999999999999999999999998 9999999999999999999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (451)
|+.|++|++||++.+ +...++..|...|.+++.+| ...|++++.| .|+-|++..|..+..+.+|.+-|.
T Consensus 295 ~S~D~tvrlWDl~ag---------kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAG---------KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred ecCCceEEEeeeccC---------ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence 999999999999997 45668888999999999999 8888888877 499999999999999999999999
Q ss_pred EEEEEecCceeeeccCCCCccccccCCCCCCCccccccccc
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSA 355 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~ 355 (451)
+++...|+ ++++|++.|.+.+||.+.+..++.....+...
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCC
Confidence 99999887 88899999999999999887766654444433
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.7e-37 Score=237.35 Aligned_cols=279 Identities=18% Similarity=0.257 Sum_probs=244.2
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
..+..+|..+. |..+|+|.+++|.| .+|++|+...+.+... ..|...|..++.+.|+..+++|+.|..+.+||+.+
T Consensus 14 ~~~qgaV~avr--yN~dGnY~ltcGsd-rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 14 DCAQGAVRAVR--YNVDGNYCLTCGSD-RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred cccccceEEEE--EccCCCEEEEcCCC-ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45556777777 99999999999999 9999999888776544 56888999999999999999999999999999999
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||-++ ....+++.+......|.++.+.. ..
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS---------~s~ePiQildea~D~V~Si~v~~----he 157 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS---------RSFEPIQILDEAKDGVSSIDVAE----HE 157 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEccc---------CCCCccchhhhhcCceeEEEecc----cE
Confidence 999999999999999999999999999999999999999987 56778888888899999998865 57
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
|++|+.||+++.||++.|+..... ...+|++++|+++++..++++-|+.+++.|-.++ +.+..+.+|...
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy-~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~ 227 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNM 227 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhh-cCCcceeEEecCCCCEEEEeeccceeeecccchh---------HHHHHhcccccc
Confidence 999999999999999998765433 6789999999999999999999999999999987 567788888765
Q ss_pred eeE--EEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecCceeeeccCCCCccccc
Q 012996 272 VTC--LAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 272 v~~--~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
=+. .+++. ...+++|++||.|.+||+.....+..+..+... |+++.++|.-..|+++...+ +.+|.
T Consensus 228 eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 228 EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc-eecee
Confidence 443 45566 889999999999999999999999999999887 99999999887777765433 34443
No 39
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.5e-38 Score=267.66 Aligned_cols=284 Identities=19% Similarity=0.318 Sum_probs=246.7
Q ss_pred CCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996 32 CASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 108 (451)
..+|..+|.++. |.| .+.++++++.| +.|+||++...... ....|..+|..++|+++|..+++++.|+.|++||
T Consensus 210 ~~gH~kgvsai~--~fp~~~hLlLS~gmD-~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 210 LSGHTKGVSAIQ--WFPKKGHLLLSGGMD-GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred ccCCccccchhh--hccceeeEEEecCCC-ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 345778888888 999 88888999998 99999998763332 3356899999999999999999999999999999
Q ss_pred cCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 109 VASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
+++|+++..+. ....++|+.|+|++ +.|++|+.|+.|+.||+++ ...++.+..|-+.|..+.|-+++
T Consensus 287 tETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------~kvvqeYd~hLg~i~~i~F~~~g 354 (503)
T KOG0282|consen 287 TETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------GKVVQEYDRHLGAILDITFVDEG 354 (503)
T ss_pred cccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------hHHHHHHHhhhhheeeeEEccCC
Confidence 99999999885 34678999999988 8899999999999999966 44678888999999999999998
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
..+++++.|+.++||+.+.+..+..+. ......++..+|++.++++-+.|+.|.+|.+...-. ...-..+
T Consensus 355 --~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r------~nkkK~f 426 (503)
T KOG0282|consen 355 --RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR------LNKKKRF 426 (503)
T ss_pred --ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccc------cCHhhhh
Confidence 899999999999999999888777665 345677899999999999999999999999765432 2334567
Q ss_pred ccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-CceeeeccCCCCccccc
Q 012996 266 SDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-PLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 266 ~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~s~d~~i~iw~ 338 (451)
.+|.. .-..+.||| |.+|++|+.||.+.+||.++-+++..++.|.+++..+.|+|. ...+|+++.||.|++|+
T Consensus 427 eGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 427 EGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 77754 456689999 999999999999999999999999999999999999999994 46889999999999996
No 40
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.4e-37 Score=253.53 Aligned_cols=291 Identities=22% Similarity=0.256 Sum_probs=249.0
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 111 (451)
|...|.++. .. ++.+++++.| |.+++||...........|.++|.+++|.-. ...|++++.|.++++|..+.
T Consensus 104 hdDWVSsv~--~~--~~~IltgsYD-g~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVK--GA--SKWILTGSYD-GTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhc--cc--CceEEEeecC-CeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 445555554 32 7899999999 9999999988888888899999998888432 33699999999999999987
Q ss_pred Ccce----eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh--------------hhhhhcccccceecccC
Q 012996 112 GRLL----KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE--------------ECESQRASHLYLHSFTG 173 (451)
Q Consensus 112 ~~~~----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~~~~~~~ 173 (451)
++.. ....+|...|-++...++|..+++|+.|.+|.+|+..+... ..........++.++.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 7543 33469999999999999999999999999999999432110 01112234567788999
Q ss_pred CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 174 ~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
|..+|.++.|++. ..+++++.|.+|+.||+.++.....+..+..+.++.++|..++|++|+.|..|++||.+++..
T Consensus 259 Ht~~Vs~V~w~d~---~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g- 334 (423)
T KOG0313|consen 259 HTEPVSSVVWSDA---TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG- 334 (423)
T ss_pred cccceeeEEEcCC---CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCC-
Confidence 9999999999884 699999999999999999999999999999999999999999999999999999999998753
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
.....++.+|.+.|.++.|+| ...|++|+.|+++++||+++.. ++..+.+|...|.++.|+. +.++++|+.
T Consensus 335 -----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGa 408 (423)
T KOG0313|consen 335 -----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGA 408 (423)
T ss_pred -----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccC
Confidence 245678999999999999999 7789999999999999999887 9999999999999999985 568999999
Q ss_pred CCCccccccC
Q 012996 331 SNPHTSSRRH 340 (451)
Q Consensus 331 d~~i~iw~~~ 340 (451)
|+.++|+.-.
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999998744
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=253.14 Aligned_cols=274 Identities=24% Similarity=0.381 Sum_probs=244.2
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCceee---------eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV 109 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 109 (451)
+.|.. |+|||++|++++-| |.|.|||+.+++... ...+..+|.|+.|+.|...+|+|+.||.|++|.+
T Consensus 216 ~EcA~--FSPDgqyLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 216 VECAR--FSPDGQYLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRI 292 (508)
T ss_pred hhhee--eCCCCceEeecccc-ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEE
Confidence 44444 99999999999999 999999998876532 1235789999999999999999999999999999
Q ss_pred CCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 110 ASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 110 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
.+|.+++.|. +|...|+|+.|+.|+..+++++.|.++++.-+ .+..++..+.+|+..|+...|.++|
T Consensus 293 ~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl-----------KSGK~LKEfrGHsSyvn~a~ft~dG- 360 (508)
T KOG0275|consen 293 ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL-----------KSGKCLKEFRGHSSYVNEATFTDDG- 360 (508)
T ss_pred ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc-----------ccchhHHHhcCccccccceEEcCCC-
Confidence 9999999995 89999999999999999999999999999999 4567889999999999999999999
Q ss_pred eeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 189 SATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
..+++++.||+|++|+..+.+++.++. ...+|+++..-| +...++++...+++++.++... .+..
T Consensus 361 -~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrs 429 (508)
T KOG0275|consen 361 -HHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRS 429 (508)
T ss_pred -CeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEee
Confidence 899999999999999999999998887 356788888888 5678899999999999998774 3333
Q ss_pred ec---cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 265 LS---DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 265 ~~---~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
+. ...+...+.+.+| |.++.+.+.|+.++.|.+.+|++-+++..|...|-.++-+|..+.||+-+.||.+++|+
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 32 2345667778899 99999999999999999999999999999999999999999999999999999999996
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-35 Score=263.35 Aligned_cols=330 Identities=17% Similarity=0.244 Sum_probs=277.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||.|- .||.|+||+..++....++.+ |..+|+++. |...|..+++|+.| +.|.+||+-...-..+ ..|.+
T Consensus 78 l~lAVGY-aDGsVqif~~~s~~~~~tfng---HK~AVt~l~--fd~~G~rlaSGskD-t~IIvwDlV~E~Gl~rL~GHkd 150 (888)
T KOG0306|consen 78 LLLAVGY-ADGSVQIFSLESEEILITFNG---HKAAVTTLK--FDKIGTRLASGSKD-TDIIVWDLVGEEGLFRLRGHKD 150 (888)
T ss_pred ceEEEEe-cCceEEeeccCCCceeeeecc---cccceEEEE--EcccCceEeecCCC-ccEEEEEeccceeeEEeecchH
Confidence 4578888 999999999998888777765 558899998 99999999999999 9999999876665544 56899
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh---
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC--- 158 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--- 158 (451)
.|+..-|..+.+++++.+.|+.|++||+.+..+..+.-.|.+.|+.+++.+ +.+++++.|+.+++|++.......
T Consensus 151 ~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~ 228 (888)
T KOG0306|consen 151 SITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETN 228 (888)
T ss_pred HHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccccccccc
Confidence 999999998899999999999999999999999999999999999999986 789999999999999981100000
Q ss_pred ---------------------------------h-------------------------------hh------c------
Q 012996 159 ---------------------------------E-------------------------------SQ------R------ 162 (451)
Q Consensus 159 ---------------------------------~-------------------------------~~------~------ 162 (451)
. .. .
T Consensus 229 ~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~ 308 (888)
T KOG0306|consen 229 RYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS 308 (888)
T ss_pred ccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence 0 00 0
Q ss_pred --------------------------------------------------------------------------------
Q 012996 163 -------------------------------------------------------------------------------- 162 (451)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (451)
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~ 388 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILL 388 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceee
Confidence
Q ss_pred -----------------------------------------------------ccccceecccCCcCceeEEEEeecCCe
Q 012996 163 -----------------------------------------------------ASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 163 -----------------------------------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
.....+.+...|.+.|++++.+|++
T Consensus 389 ~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-- 466 (888)
T KOG0306|consen 389 ASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-- 466 (888)
T ss_pred eecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC--
Confidence 0000112335788888888888988
Q ss_pred eEEEEeeCCCcEEEEEcCC-----Cc--------eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996 190 ATIVSASEDRTCKVWSLLK-----GR--------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~-----~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (451)
..+++|+.|.+|++||+.- +. ..+.+..+..|.|+.+||++++|+++--|.++++|-+++.
T Consensus 467 ~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl------ 540 (888)
T KOG0306|consen 467 KGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL------ 540 (888)
T ss_pred CceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce------
Confidence 8899999999999999742 11 1134456789999999999999999999999999999986
Q ss_pred CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
+..-.+.||.-||.||..|| +..++|||.|.+|+||-+.-|.|-+.+-+|...|.++.|-|+..++.++|.|+.++
T Consensus 541 ---KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvK 617 (888)
T KOG0306|consen 541 ---KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVK 617 (888)
T ss_pred ---eeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEE
Confidence 55678899999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcccccc
Q 012996 336 SSRRHGSQLPPPLDKYV 352 (451)
Q Consensus 336 iw~~~~~~~~~~~~~~~ 352 (451)
-||-..-...+.++.+.
T Consensus 618 qWDg~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLDGHH 634 (888)
T ss_pred eechhhhhhheeeccch
Confidence 99977655555554443
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-35 Score=263.59 Aligned_cols=319 Identities=18% Similarity=0.221 Sum_probs=268.0
Q ss_pred CCCCeEEEECcc-Cce------eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 11 ADTGIGCWDLES-GAE------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 11 ~dg~i~vwd~~~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.+.+|.+|.++. +.. ...+ ...+|...|..++ ++.+...+++++. +.+++|+..+.++...... +.+
T Consensus 342 ~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~--vS~d~~~~~Sga~--~SikiWn~~t~kciRTi~~-~y~ 415 (888)
T KOG0306|consen 342 ANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLC--VSSDSILLASGAG--ESIKIWNRDTLKCIRTITC-GYI 415 (888)
T ss_pred ecCceEEEEeccCCCCCcccccccee-eeccchhheeEEE--eecCceeeeecCC--CcEEEEEccCcceeEEecc-ccE
Confidence 467888888764 222 1112 2235778888888 9999888888877 7999999999888666544 589
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
.+..|.|.++++++|...|.+.+||+.+...+.+.++|.+.|++++.+||+..+++||.|.+|++||..-.... +....
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-~gt~~ 494 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-PGTQK 494 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-Ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998542220 00000
Q ss_pred cccce--ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996 164 SHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 164 ~~~~~--~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
....+ ...-.-...|.|+.++|++ .+|+.+=.|.+|++|-+.+.+..-++. |.-+|.|+.++|+++.+++|+.|.
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Spdg--k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSPDG--KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcCCC--cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 00000 0111235678999999999 899999999999999999988777666 889999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
.|++|-++-+ .+...+.+|...|.++.|-| ...++++|.|+.|+-||-...+.++.+.+|...|++++.+
T Consensus 573 nVKiWGLdFG---------DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~ 643 (888)
T KOG0306|consen 573 NVKIWGLDFG---------DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVS 643 (888)
T ss_pred ceEEeccccc---------hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEc
Confidence 9999999887 45667889999999999999 8999999999999999999999999999999999999999
Q ss_pred ecCceeeeccCCCCccccccCCCCCCCc
Q 012996 320 RRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 320 ~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
|+|.+++++|.|.+|++|......+...
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCcceeee
Confidence 9999999999999999999876544433
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=274.24 Aligned_cols=283 Identities=20% Similarity=0.311 Sum_probs=249.1
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 113 (451)
....+..++ |+|....++++-.+ |.|++||..-+.+..+ ..|.++|..++|+|++.++++|+.|-.|+||+..+.+
T Consensus 8 kSsRvKgls--FHP~rPwILtslHs-G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr 84 (1202)
T KOG0292|consen 8 KSSRVKGLS--FHPKRPWILTSLHS-GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR 84 (1202)
T ss_pred cccccccee--cCCCCCEEEEeecC-ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence 334556666 99999999999888 9999999987776654 4589999999999999999999999999999999999
Q ss_pred ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
++.++.+|.+.|..+.|++.-.+++++|.|.+|+||+. .+..++..+.+|...|.|..|+|.. ..++
T Consensus 85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw-----------qsr~~iavltGHnHYVMcAqFhptE--DlIV 151 (1202)
T KOG0292|consen 85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW-----------QSRKCIAVLTGHNHYVMCAQFHPTE--DLIV 151 (1202)
T ss_pred ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec-----------cCCceEEEEecCceEEEeeccCCcc--ceEE
Confidence 99999999999999999999999999999999999999 5677899999999999999999987 7999
Q ss_pred EeeCCCcEEEEEcCCCc---------------------------e-ee-eee-cccceeEEEECCCCCEEEEEeCCCcEE
Q 012996 194 SASEDRTCKVWSLLKGR---------------------------L-LR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~---------------------------~-~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (451)
++|.|.+|++||+..-+ . +. .+. |...|+-++|+|.-..+++|++|..|+
T Consensus 152 SaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVK 231 (1202)
T KOG0292|consen 152 SASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVK 231 (1202)
T ss_pred EecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceee
Confidence 99999999999985211 0 01 111 677899999999999999999999999
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
+|.+...+ ...+-+..+|.+.|+++-|+| .+++++.|.|++|+|||+...+.+++++.-.+..+.++.+|..
T Consensus 232 lWrmnetK-------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 232 LWRMNETK-------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred EEEecccc-------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence 99998754 244667889999999999999 9999999999999999999999999999888999999999999
Q ss_pred ceeeeccCCCCccccccCC
Q 012996 323 LYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 323 ~~l~~~s~d~~i~iw~~~~ 341 (451)
+++|.| .|+-+.++.+..
T Consensus 305 NLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 305 NLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred ceeeee-cCCceEEEEEcc
Confidence 887776 566666676653
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.8e-36 Score=258.93 Aligned_cols=266 Identities=16% Similarity=0.275 Sum_probs=227.6
Q ss_pred EEEeecCCCCCCeEEEECcc-CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996 3 LLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~ 81 (451)
-+|++++ .|+.|+||++-. +.++++|.+|. .+|..+. |+.+|..+++++.| +.|++||++++++..+.....
T Consensus 228 hLlLS~g-mD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~--~s~~g~~fLS~sfD-~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 228 HLLLSGG-MDGLVKLWNVYDDRRCLRTFKGHR---KPVRDAS--FNNCGTSFLSASFD-RFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred eEEEecC-CCceEEEEEEecCcceehhhhcch---hhhhhhh--ccccCCeeeeeecc-eeeeeeccccceEEEEEecCC
Confidence 3788999 999999999875 88998888766 4555555 99999999999999 999999999999999888889
Q ss_pred CeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
.++|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.+++.+.|+.++||+.+..
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~------ 374 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP------ 374 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC------
Confidence 99999999988 88999999999999999999999999999999999999999999999999999999998552
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee---cccceeEEEECCCCCEEE
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV---FPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~---~~~~i~~~~~~~~~~~l~ 234 (451)
.....+ ...+.....++..+|++ .+++.-+.|+.|.++.+...-.. ..+. ..+.-..+.|||+|.+|+
T Consensus 375 --v~ik~i--~~~~~hsmP~~~~~P~~--~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 375 --VPIKNI--ADPEMHTMPCLTLHPNG--KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred --ccchhh--cchhhccCcceecCCCC--CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 111111 22233445578888888 89999999999999986543221 1122 345667889999999999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd 296 (451)
+|..||.+.+||.++. +.+..+..|..++..+.|+| ...+|+|+.||.|++||
T Consensus 449 SGdsdG~v~~wdwkt~---------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKTT---------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eecCCccEEEeechhh---------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999986 56788999999999999999 88999999999999997
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-36 Score=234.33 Aligned_cols=258 Identities=17% Similarity=0.252 Sum_probs=222.1
Q ss_pred ccEEEEECCCCc-ee--eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEcc-CC
Q 012996 61 GSILYWSWSKPQ-VE--VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DG 134 (451)
Q Consensus 61 g~i~vw~~~~~~-~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~ 134 (451)
|.+.|.+...+. +. ....-.+.+..++|+++ .+.+++++.||++++||+... .++..++.|...|.++.|++ ++
T Consensus 38 G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r 117 (311)
T KOG0277|consen 38 GRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRR 117 (311)
T ss_pred ceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccc
Confidence 899999986333 22 22234789999999985 567888899999999996433 57888999999999999998 66
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLR 213 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~ 213 (451)
..+++++.|++|++|+. .....+.++.+|...|...+|+|... +.+++++.|+++++||++.. +.+.
T Consensus 118 ~~~ltsSWD~TiKLW~~-----------~r~~Sv~Tf~gh~~~Iy~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDP-----------NRPNSVQTFNGHNSCIYQAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred eeEEeeccCCceEeecC-----------CCCcceEeecCCccEEEEEecCCCCC-CeEEEccCCceEEEEEecCCCceeE
Confidence 77889999999999998 44667888999999999999999765 89999999999999999864 4444
Q ss_pred eee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCC
Q 012996 214 NIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSED 289 (451)
Q Consensus 214 ~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d 289 (451)
+. |...+.++.|+. +...+++|+.|+.|+.||+++-. .++..+.+|.-.|..+.||| ..+|++++.|
T Consensus 186 -i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 186 -IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred -EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecCcchhhHhhhcccc
Confidence 55 778999999998 67889999999999999999876 66888999999999999999 8899999999
Q ss_pred CcEEEEeCCCC-ceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCcccccc
Q 012996 290 GMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 290 g~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~ 339 (451)
-+++|||...+ ..+.+...|..-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 257 mT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 257 MTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99999998854 45667888999999999997 7789999999999999984
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=239.24 Aligned_cols=261 Identities=23% Similarity=0.274 Sum_probs=228.9
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
....|.+.|..+.|+|+|.+||+|+.|..|.+|++.. -+-...+++|.++|..+.|.+|++.+++++.|.+++.||+++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 4456899999999999999999999999999999643 345677889999999999999999999999999999999955
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (451)
....+.+.+|...|+++.-+.-+. .++.+++.|+++++||+++...++.+....+++++.|...+..+
T Consensus 122 -----------G~~~rk~k~h~~~vNs~~p~rrg~-~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 122 -----------GKRIRKHKGHTSFVNSLDPSRRGP-QLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred -----------ceeeehhccccceeeecCccccCC-eEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 567788899999999998555543 67889999999999999999999999889999999999999999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----CceEEEeec
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRL 308 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~ 308 (451)
.+|+-|+.|++||++.. .....+.+|..+|+.+..+| |.++.+-+.|.++++||++- .+++..+.+
T Consensus 190 ~sggIdn~ikvWd~r~~---------d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKN---------DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred eeccccCceeeeccccC---------cceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 99999999999999886 55789999999999999999 99999999999999999874 345777777
Q ss_pred CCC----CeeEEEEEecCceeeeccCCCCccccccCCCCCCCcccccccccc
Q 012996 309 AKG----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD 356 (451)
Q Consensus 309 ~~~----~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~ 356 (451)
|.. ....++|+|++.++..|+.|..+++|+.....+...+..+..+..
T Consensus 261 ~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 261 HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 643 456789999999999999999999999988776666655554443
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-36 Score=237.36 Aligned_cols=288 Identities=16% Similarity=0.232 Sum_probs=251.5
Q ss_pred cCCCCCCceEEecceEe---eccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 31 SCASPPHGLACVGQRFL---ASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 31 ~~~~~~~~v~~~~~~~~---~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
.+.+|.+.|..++ |+ |+|-+|++++.| |.-.+-+-+++... ....|.+.|.+...+.+....|+++.|=+-+|
T Consensus 9 ~c~ghtrpvvdl~--~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 9 TCHGHTRPVVDLA--FSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred EEcCCCcceeEEe--ccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 3446777777777 66 688899999998 88888887877765 44568999999999998888999999999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
||.-+|..+.+|. |..-|..++|+.|.++|++|+.+..++|||+.. ...+...+.+|++.|..+.|+..
T Consensus 86 w~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~----------p~App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 86 WDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNR----------PKAPPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred hhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccC----------CCCCchhhcCCCCcceeEEEecc
Confidence 9999999999985 888999999999999999999999999999954 34456778999999999999988
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
. +.+++++.|++||+||.+++..++++..+.+|+++.++++|++|.++. .+.|.+||..+.. ++..+
T Consensus 155 D--~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~---------~lKs~- 221 (334)
T KOG0278|consen 155 D--KCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFG---------LLKSY- 221 (334)
T ss_pred C--ceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-CceeEEecccccc---------ceeec-
Confidence 7 788888999999999999999999999999999999999999887654 5679999998853 23333
Q ss_pred cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.-...|.+...+| ...+++|+.|+.++.||..+++.+..+ ++|.++|.++.|+|+|...|+||.||+|++|.....+.
T Consensus 222 k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 222 KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 2356788999999 899999999999999999999999986 89999999999999999999999999999999876554
Q ss_pred C
Q 012996 345 P 345 (451)
Q Consensus 345 ~ 345 (451)
.
T Consensus 302 ~ 302 (334)
T KOG0278|consen 302 Y 302 (334)
T ss_pred h
Confidence 4
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-36 Score=248.96 Aligned_cols=269 Identities=21% Similarity=0.343 Sum_probs=229.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~ 82 (451)
.+++|. .|++|+|||..+..+++.+.+ |.+.|.|+. | +.+.+++|++| .+|+|||+++++..-. ..|.+.
T Consensus 209 kiVSGl-rDnTikiWD~n~~~c~~~L~G---HtGSVLCLq--y--d~rviisGSSD-sTvrvWDv~tge~l~tlihHcea 279 (499)
T KOG0281|consen 209 KIVSGL-RDNTIKIWDKNSLECLKILTG---HTGSVLCLQ--Y--DERVIVSGSSD-STVRVWDVNTGEPLNTLIHHCEA 279 (499)
T ss_pred hhhccc-ccCceEEeccccHHHHHhhhc---CCCcEEeee--c--cceEEEecCCC-ceEEEEeccCCchhhHHhhhcce
Confidence 478899 999999999999888877765 557788877 5 55688888887 9999999999987644 567899
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
|..+.|+ ..++++++.|.++.+||+.+.. +.+.+.+|...|+.+.|+ .+++++++.|.+|++|++.+
T Consensus 280 VLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st------ 349 (499)
T KOG0281|consen 280 VLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST------ 349 (499)
T ss_pred eEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc------
Confidence 9999997 6799999999999999998764 345678999999999997 66999999999999999944
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
..+++++.+|...|.|+.+. + +++++|+.|.+|++||+..|.+++.+. |+.-|.++.| +.+.+++|+.
T Consensus 350 -----~efvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY 418 (499)
T KOG0281|consen 350 -----CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 418 (499)
T ss_pred -----eeeehhhhcccccceehhcc--C--eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence 66889999999999988763 3 899999999999999999999999988 8888999999 6788999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
||+|++||+............-++..+..|++.|..+.|. ...+++++.|.+|.|||..++-+-
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999998875433333334567788899999999998 577899999999999998776543
No 50
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-34 Score=245.04 Aligned_cols=282 Identities=22% Similarity=0.326 Sum_probs=244.0
Q ss_pred CCCceEEecceEeeccCc-ccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 35 PPHGLACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~-l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
..+.|..++ |+|...+ +|++++ -.+.+|+..+....- .......|.+++|..||++||+|...|.|+|||..+.
T Consensus 25 e~~~vssl~--fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLC--FSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEe--cCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 447788888 9997776 444444 689999987766543 3345788999999999999999999999999998887
Q ss_pred cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 113 RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
..++.+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+ ......+.+|+..|.+.+|+|..+ .+
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-----------a~v~~~l~~htDYVR~g~~~~~~~-hi 168 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-----------AYVQAELSGHTDYVRCGDISPAND-HI 168 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-----------cEEEEEecCCcceeEeeccccCCC-eE
Confidence 78899999999999999999 566788999999999999965 223557899999999999998764 78
Q ss_pred EEEeeCCCcEEEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 192 IVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
++||+.||.|++||++.. ..+.++.|..+|..+.+-|.|..+++++. ..+++||+-++. +.+..+..|..
T Consensus 169 vvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~--------qll~~~~~H~K 239 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG--------QLLTSMFNHNK 239 (487)
T ss_pred EEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc--------eehhhhhcccc
Confidence 999999999999999987 88889999999999999999999998764 579999999765 55666667999
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.|+|+.+.. +..|++|+-|+.|++||+.+.+.+..+.. .+||-+++.+|+++.++.|..+|.+.+=+....
T Consensus 240 tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 240 TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred eEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 999999998 99999999999999999999999999876 789999999999999999999999877654443
No 51
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.7e-34 Score=266.72 Aligned_cols=269 Identities=27% Similarity=0.464 Sum_probs=230.9
Q ss_pred EEEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-ce-eeeec
Q 012996 3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QV-EVKSL 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-~~-~~~~~ 78 (451)
.+|++++ .|+.+++|+..+++ ....+ .+|...|..++ |+|+++++++++.| ++|++||+... .. .....
T Consensus 172 ~~l~~~~-~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~--fs~d~~~l~s~s~D-~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 172 RALAAAS-SDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVA--FSPDGSYLLSGSDD-KTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred CeEEEcc-CCCcEEEeecccccchhhccc---cccccceeeeE--ECCCCcEEEEecCC-ceEEEeeccCCCeEEEEecC
Confidence 3588888 99999999997777 44444 56778899999 99999999999998 99999999443 33 34457
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++..
T Consensus 245 H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~-- 322 (456)
T KOG0266|consen 245 HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK-- 322 (456)
T ss_pred CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999966321
Q ss_pred hhhcccccceecccCCcCc--eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc---ceeEEEECCCCCE
Q 012996 159 ESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS---VIDAIALDPAEHV 232 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~i~~~~~~~~~~~ 232 (451)
.+...+.++... +++++|++++ .++++++.|+.+++||+..+.....+. |.. .+.+...++.+.+
T Consensus 323 -------~~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 323 -------LCLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred -------eeeecccCCCCCCceeEEEECCCC--cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 034455555544 9999999999 899999999999999999998887776 433 4455566789999
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEEc--CCCcEEEEeCC
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS--EDGMVRVWDPI 298 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~ 298 (451)
+++|+.|+.|++||+.+. ..+..+.+| ...+..+.++| ..++++++ .|+.+++|...
T Consensus 394 i~sg~~d~~v~~~~~~s~---------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSG---------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCcc---------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999985 456788899 89999999999 99999988 78999999754
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=237.77 Aligned_cols=298 Identities=17% Similarity=0.224 Sum_probs=247.8
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
...|...+.+++ .+|+.+++++||.| ....+|+..++.... ...|.+.|+++.|+.+|.+||+|+.+|.|+||+..
T Consensus 60 F~~H~~svFavs--l~P~~~l~aTGGgD-D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 60 FDKHTDSVFAVS--LHPNNNLVATGGGD-DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred hhhcCCceEEEE--eCCCCceEEecCCC-ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 345668899999 99999999999998 999999999888654 45699999999999999999999999999999999
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
++.....+...-..+.=+.|+|-+..|+.|+.||.+-+|.+ ++....+.+.+|..++++=.|.|+| +
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i-----------p~~~~~kv~~Gh~~~ct~G~f~pdG--K 203 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI-----------PSQALCKVMSGHNSPCTCGEFIPDG--K 203 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC-----------CCcceeeEecCCCCCcccccccCCC--c
Confidence 99988888766778888999999999999999999999999 3446778899999999999999998 8
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
.++++..||+|++||+.+++++..+. ......++.++..+..++.|..++.+++.+..+++....... ........+
T Consensus 204 r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-~~~~l~~~~ 282 (399)
T KOG0296|consen 204 RILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-TVPELKPSQ 282 (399)
T ss_pred eEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCC-CCccccccc
Confidence 99999999999999999999998887 344577888888999999999999999888777643221111 001112234
Q ss_pred CcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 269 SKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 269 ~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
...+.++.+.| -.+.|+|+-||+|.|||+...++.+.+ .|..+|+.+.|-+ ..+|++++.+|.|+.||.+++++
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccce
Confidence 45555555554 568899999999999999877655544 5688899999999 78999999999999999998887
Q ss_pred CCcc
Q 012996 345 PPPL 348 (451)
Q Consensus 345 ~~~~ 348 (451)
...+
T Consensus 361 ~~~y 364 (399)
T KOG0296|consen 361 KFTY 364 (399)
T ss_pred EEEE
Confidence 5544
No 53
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-35 Score=261.70 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=251.3
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecc----------eEeeccCcccCCCCCCccEEEEECCCC---ceeeee
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQ----------RFLASSQLREQPSASSGSILYWSWSKP---QVEVKS 77 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----------~~~~~~~~l~~~~~d~g~i~vw~~~~~---~~~~~~ 77 (451)
.|..+.|||+..-..+......-.|..+|+.+.. .-.|.+ .+.+++.| ++|++|++... +...+.
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD-~TIRlW~l~~ctnn~vyrRN 421 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSD-GTIRLWDLAFCTNNQVYRRN 421 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCC-CcEEEeecccccccceeecc
Confidence 7899999999876555443333345566665540 011222 25566666 99999998741 110000
Q ss_pred -----------------------------------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996 78 -----------------------------------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (451)
Q Consensus 78 -----------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 122 (451)
.....+.+++.+|+|++||+|..-|+++||++...+....+.+|.
T Consensus 422 ils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe 501 (1080)
T KOG1408|consen 422 ILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE 501 (1080)
T ss_pred cchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc
Confidence 013468999999999999999999999999999999999999999
Q ss_pred CCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996 123 RAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (451)
Q Consensus 123 ~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~ 199 (451)
..|.|+.|+. ..++|++++.|..|.|||+.. ...++.++.+|...|+++.|...+.+..+++++.|+
T Consensus 502 sEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r----------ny~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 502 SEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR----------NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred ceeEEEeecCchhhhHhhhhccCCceEEEEeccc----------ccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 9999999985 457899999999999999953 566788999999999999999988778999999999
Q ss_pred cEEEEEcCC---Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996 200 TCKVWSLLK---GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (451)
Q Consensus 200 ~i~iwd~~~---~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 273 (451)
.|.+--.+. +.....-. ....++.++..|..+++++++.|..|+||++.+++.. +....-.+|.+...
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLI 645 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee------eeecccccCCCceE
Confidence 876544432 22211111 3467899999999999999999999999999998532 22233445778888
Q ss_pred EEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 274 CLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.+...| |.|+++.+.|.++.++|..+++++.+..+|...|+.+.|.+|-+.|++.+.||.|.+|.+...
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 899999 999999999999999999999999999999999999999999999999999999999997653
No 54
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=255.41 Aligned_cols=246 Identities=21% Similarity=0.337 Sum_probs=227.4
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
+.+.|.++.|+|...+++++-.+|.|.|||.++...++.+....-+|.+..|-+..+++++|+.|..|+||+..+
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt----- 86 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT----- 86 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc-----
Confidence 678999999999999999999999999999999999999999999999999999899999999999999999954
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYA 235 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~ 235 (451)
...++.|..|+..|.+++.+|.. .+++++|.|-+|++||.... .+.+.+. |...|.+++|.| |.+.+++
T Consensus 87 ------~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS 158 (794)
T KOG0276|consen 87 ------GEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS 158 (794)
T ss_pred ------ceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee
Confidence 56788999999999999999998 79999999999999999865 5566666 888999999999 7889999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC---CEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG---DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (451)
++-|++|++|.+... .+..++.+|...|+|+.+-++ .+|++|+.|.+|+|||..+..|++++.+|...
T Consensus 159 ~sLDrTVKVWslgs~---------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N 229 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSP---------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN 229 (794)
T ss_pred eeccccEEEEEcCCC---------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc
Confidence 999999999999886 456789999999999999983 49999999999999999999999999999999
Q ss_pred eeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 313 v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
|+.++|+|.-..+++||.||+++||...+.++..
T Consensus 230 vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~ 263 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEK 263 (794)
T ss_pred ceEEEecCCCcEEEEecCCccEEEecCcceehhh
Confidence 9999999999999999999999999988766543
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.4e-33 Score=247.05 Aligned_cols=265 Identities=29% Similarity=0.514 Sum_probs=229.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~ 81 (451)
.+|++++ .||.|.+||+.+++....+..+. ..+..+. |+|+++.+++++.+ |.|.+|++.++... ....|..
T Consensus 22 ~~l~~~~-~~g~i~i~~~~~~~~~~~~~~~~---~~i~~~~--~~~~~~~l~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 94 (289)
T cd00200 22 KLLATGS-GDGTIKVWDLETGELLRTLKGHT---GPVRDVA--ASADGTYLASGSSD-KTIRLWDLETGECVRTLTGHTS 94 (289)
T ss_pred CEEEEee-cCcEEEEEEeeCCCcEEEEecCC---cceeEEE--ECCCCCEEEEEcCC-CeEEEEEcCcccceEEEeccCC
Confidence 4688888 89999999999888776666543 5566667 99999999999887 99999999875443 3345667
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.+.++.|+|++.++++++.+|.|.+||+.+++....+..|...|.++.|+|++.++++++.||.|++||+++
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------- 166 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-------- 166 (289)
T ss_pred cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc--------
Confidence 899999999999999988899999999998988888889999999999999999888888899999999953
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-ecccceeEEEECCCCCEEEEEeCCC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
......+..|...+.++.|++++ ..+++++.++.+++||++.++.+..+ .+...+.+++|+|++.++++++.+|
T Consensus 167 ---~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 167 ---GKCVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred ---cccceeEecCccccceEEECCCc--CEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 33455666888899999999987 78888989999999999998888888 5778999999999988888888899
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
.|++||+... .....+..|...|.+++|+| +.+|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTG---------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCc---------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999875 44566778999999999999 89999999999999996
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-34 Score=262.04 Aligned_cols=256 Identities=17% Similarity=0.288 Sum_probs=229.6
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|..++|+|...+++++-.+|.|.+||.+-+.++..|..|.++|..++|+|.+.+|++||.|-.|+||+.
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY-------- 80 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY-------- 80 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec--------
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
....++.++.+|-..|..+.|++.- .+++++|.|.+|+||+..+++++..+. |...|.|..|+|....+++++-
T Consensus 81 ---k~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 81 ---KTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred ---ccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc
Confidence 4577889999999999999999987 799999999999999999999999988 8999999999999999999999
Q ss_pred CCcEEEEEccCCCCCCCCC--------------------CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 239 DGSIYIAALNAESPSTSSY--------------------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
|.+|++||+.......... ..-....+.||...|+-++|+| -.++++|+.|..|++|..
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEe
Confidence 9999999986543221111 1223356789999999999999 899999999999999998
Q ss_pred CCCc--eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996 298 ITHN--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 298 ~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
..-+ .+.+.++|.++|+++.|+|....+++.|.|+++++||.......+.+
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 7544 45578899999999999999999999999999999999877665555
No 57
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.6e-32 Score=251.25 Aligned_cols=272 Identities=13% Similarity=0.143 Sum_probs=204.3
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCce--------------eeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQV--------------EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~--------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 110 (451)
.++++..+++++.+ ..+..|+...+.. .....|.+.|.+++|+| ++++|++|+.||.|++||+.
T Consensus 28 ~~~d~~~~~~~n~~-~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 28 ALWDCSNTIACNDR-FIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred ccCCCCCcEeECCc-eEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 55565555555554 5555665433221 12445889999999999 88999999999999999997
Q ss_pred CC-------cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 111 SG-------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 111 ~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
++ ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+ ......+.+|...|.+++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-----------g~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----------GKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------CeEEEEEcCCCCceEEEE
Confidence 65 3467789999999999999975 6899999999999999954 345667788999999999
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc-ceeEEEECCCCCEEEEEe----CCCcEEEEEccCCCCCCCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS-VIDAIALDPAEHVFYAGS----RDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~-~i~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~ 256 (451)
|++++ .+|++++.|+.|++||+++++.+..+. |.+ ....+.|.+++..+++++ .|+.|++||++...
T Consensus 176 ~spdG--~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~----- 248 (493)
T PTZ00421 176 WNLDG--SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA----- 248 (493)
T ss_pred EECCC--CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-----
Confidence 99988 899999999999999999999887776 443 345678899887777654 47899999998753
Q ss_pred CCceeeeeecc-CCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCC
Q 012996 257 YGMHIIGSLSD-HSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 257 ~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
.++..... +...+....|++ +.+|++|+ .||.|++||+.+++++..... +..++..++|.|.-. +-...--
T Consensus 249 ---~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~E 323 (493)
T PTZ00421 249 ---SPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCE 323 (493)
T ss_pred ---CceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--cccccee
Confidence 22333322 234556667888 88888887 599999999999988876654 345788999998432 2222223
Q ss_pred CccccccCC
Q 012996 333 PHTSSRRHG 341 (451)
Q Consensus 333 ~i~iw~~~~ 341 (451)
..+++++..
T Consensus 324 i~r~~~l~~ 332 (493)
T PTZ00421 324 IARFYALTY 332 (493)
T ss_pred eeEEEEecC
Confidence 345566543
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-34 Score=238.17 Aligned_cols=269 Identities=19% Similarity=0.341 Sum_probs=226.0
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC--C
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--A 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--~ 80 (451)
.+||+++ .|.+..+|++.....+.-.+...+|..+|..+. ||||.+++++++.+ ..+.+||+.++.......+ .
T Consensus 237 kyLAsaS-kD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~--wSPDdryLlaCg~~-e~~~lwDv~tgd~~~~y~~~~~ 312 (519)
T KOG0293|consen 237 KYLASAS-KDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIM--WSPDDRYLLACGFD-EVLSLWDVDTGDLRHLYPSGLG 312 (519)
T ss_pred eeEeecc-CCceEEEEEEecCcceeeeeeeecccCceEEEE--ECCCCCeEEecCch-HheeeccCCcchhhhhcccCcC
Confidence 5899999 999999999876666555566667888999999 99999999999998 8899999999987766554 4
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
..+.+++|.|||..+++|+.|+.+..||+ +|+.+..+++-. ..|.+++.++||+++++.+.|..|++++.++...
T Consensus 313 ~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d--- 388 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD--- 388 (519)
T ss_pred CCcceeEEccCCceeEecCCCCcEEEecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh---
Confidence 78999999999999999999999999997 566666665543 5689999999999999999999999999865211
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c--ccceeEEEECC-CCCEEEE
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F--PSVIDAIALDP-AEHVFYA 235 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~--~~~i~~~~~~~-~~~~l~~ 235 (451)
..+.....+|+++.++.++ .++++.-.+..+++||+.....++.+. | ..-+-.-||-. +..++++
T Consensus 389 ---------r~lise~~~its~~iS~d~--k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 389 ---------RGLISEEQPITSFSISKDG--KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred ---------hccccccCceeEEEEcCCC--cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 1133345689999999988 899999999999999999877777665 2 22344445554 5689999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~ 299 (451)
|+.|+.|+||+..++ .++..+.||...|++++|+| ..++|+||.||+|+||....
T Consensus 458 GSED~kvyIWhr~sg---------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISG---------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCC---------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999987 67889999999999999999 78999999999999998754
No 59
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=260.46 Aligned_cols=251 Identities=18% Similarity=0.220 Sum_probs=206.9
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--------------------------------C-------------
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------------------------------G------------- 112 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------------- 112 (451)
.|.+.|.++.||+||+|||+||.||.|+||.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 5889999999999999999999999999998754 0
Q ss_pred ---------------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996 113 ---------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 113 ---------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (451)
++++.+.+|.+.|.++.|+.+ ++|++++.|.+|++|++ ....++..|. |...
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~-----------~~~~CL~~F~-Hndf 411 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHP-----------GRKECLKVFS-HNDF 411 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecC-----------CCcceeeEEe-cCCe
Confidence 122345689999999999975 58999999999999999 4456666665 9999
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
|+|++|+|..+ +++++|+.||.|+||++...+.+.......-|++++|.|+|++.++|+.+|.+++|+....+......
T Consensus 412 VTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 412 VTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 99999999876 89999999999999999998888877788999999999999999999999999999998764321100
Q ss_pred CceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC--CeeEEEEEecCceeeeccCCCC
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
....-..-..|. .|+++.|.| .+.+++.+.|..|+|||.++..++..|+++.. .-....|+.||++|++++.|..
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW 569 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence 000000011133 899999999 44577788999999999999999999987643 4456789999999999999999
Q ss_pred ccccccCCCC
Q 012996 334 HTSSRRHGSQ 343 (451)
Q Consensus 334 i~iw~~~~~~ 343 (451)
|++|+.....
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999985443
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-33 Score=247.17 Aligned_cols=270 Identities=19% Similarity=0.257 Sum_probs=231.1
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc-ccC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-HYR 123 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~ 123 (451)
|+ ..+.+|++.. ..|.+|+..++.+... ..+.+.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |..
T Consensus 185 Ws-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 185 WS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred cc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc
Confidence 66 4556666655 5899999998885543 33488999999999999999999999999999999999999988 999
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
.|-+++|. +..+.+|+.|+.|..+|++.. ......+.+|...|..+.|++++ .++++|+.|+.+.|
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~----------~~~~~~~~~H~qeVCgLkws~d~--~~lASGgnDN~~~I 327 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRIS----------QHVVSTLQGHRQEVCGLKWSPDG--NQLASGGNDNVVFI 327 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecc----------hhhhhhhhcccceeeeeEECCCC--CeeccCCCccceEe
Confidence 99999998 678999999999999999762 12222488999999999999999 89999999999999
Q ss_pred EEcCCCceeeeee-cccceeEEEECC-CCCEEEEE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 204 WSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
||.....++..+. |...|.+++|+| ....||+| +.|+.|++||..++. .+... .-...|++|.|++
T Consensus 328 wd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~v-dtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 328 WDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSV-DTGSQVCSLIWSK 397 (484)
T ss_pred ccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eeccc-ccCCceeeEEEcC
Confidence 9997777777665 999999999999 67788886 468999999999864 23333 3467999999999
Q ss_pred -CCEEEEE--cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 280 -GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 280 -~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.+-|+++ ..++.|.||++.+.+++..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 5445543 45778999999999999999999999999999999999999999999999998765
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=219.03 Aligned_cols=246 Identities=18% Similarity=0.268 Sum_probs=215.4
Q ss_pred eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.....+.++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee-cccceeEEEECCCC
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAE 230 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~ 230 (451)
.+..+.+.+|.+.|+.++|+.+. ..+++|+.|..+++||.++. ++++.+. ....|.++.. .+
T Consensus 91 -----------Gkv~Rr~rgH~aqVNtV~fNees--SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~ 155 (307)
T KOG0316|consen 91 -----------GKVDRRFRGHLAQVNTVRFNEES--SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AE 155 (307)
T ss_pred -----------CeeeeecccccceeeEEEecCcc--eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cc
Confidence 66788999999999999999887 89999999999999999865 5566665 5667877777 56
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
..+++|+.||+++.||++.+.. ... .-..+|+++.|++ ++..++++.|+++++.|-.+|++++.+++|
T Consensus 156 heIvaGS~DGtvRtydiR~G~l---------~sD--y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 156 HEIVAGSVDGTVRTYDIRKGTL---------SSD--YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred cEEEeeccCCcEEEEEeeccee---------ehh--hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 7899999999999999998742 222 2356999999999 999999999999999999999999999999
Q ss_pred CCCe--eEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996 310 KGPV--NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 310 ~~~v--~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
...- ...+++.....+++||.||.+++|++......
T Consensus 225 kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 225 KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 8753 44567777889999999999999998765443
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-32 Score=275.03 Aligned_cols=260 Identities=20% Similarity=0.281 Sum_probs=220.2
Q ss_pred ccEEEEECCCCceeee------ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----c----ceeeeccccCCee
Q 012996 61 GSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----R----LLKKWHAHYRAVT 126 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~----~~~~~~~~~~~v~ 126 (451)
|.+++|+......... ..|...|.+++|+|+|++||+|+.|+.|+||++... . ....+. +...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 7788888775544322 226789999999999999999999999999997532 1 122233 356789
Q ss_pred EEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEE
Q 012996 127 CLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVW 204 (451)
Q Consensus 127 ~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iw 204 (451)
+++|++ ++.+|++++.||.|++||+.+ ...+..+.+|...|++++|++ ++ .+|++|+.||.|++|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~-----------~~~~~~~~~H~~~V~~l~~~p~~~--~~L~Sgs~Dg~v~iW 603 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVAR-----------SQLVTEMKEHEKRVWSIDYSSADP--TLLASGSDDGSVKLW 603 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCC-----------CeEEEEecCCCCCEEEEEEcCCCC--CEEEEEcCCCEEEEE
Confidence 999987 578999999999999999954 445677889999999999996 45 799999999999999
Q ss_pred EcCCCceeeeeecccceeEEEEC-CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996 205 SLLKGRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (451)
Q Consensus 205 d~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 283 (451)
|++++..+..+.....+.++.|+ +++.+|++|+.||.|++||++... .++..+.+|...|+++.|.++.+|
T Consensus 604 d~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~--------~~~~~~~~h~~~V~~v~f~~~~~l 675 (793)
T PLN00181 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK--------LPLCTMIGHSKTVSYVRFVDSSTL 675 (793)
T ss_pred ECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC--------ccceEecCCCCCEEEEEEeCCCEE
Confidence 99999988888877789999995 579999999999999999998753 245567789999999999878899
Q ss_pred EEEcCCCcEEEEeCCC------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 284 ISGSEDGMVRVWDPIT------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 284 ~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
++++.|++|++||+.. ..++.++.+|...+..++|+|++.+|++|+.|+.+++|+....
T Consensus 676 vs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 676 VSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 9999999999999874 3678899999999999999999999999999999999997643
No 63
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=5.4e-34 Score=239.05 Aligned_cols=276 Identities=19% Similarity=0.273 Sum_probs=233.2
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
|...+..+. |.++...|+++|.| ..|++|+......... ....++|+.+.|.++++++++++.|+.+++|++.+
T Consensus 174 h~gev~~v~--~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~ 250 (459)
T KOG0288|consen 174 HEGEVHDVE--FLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS 250 (459)
T ss_pred cccccceeE--EccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc
Confidence 334445555 99999999999999 9999999987663322 33467899999999999999999999999999999
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
.+...++.+|.+.|+++.|......+++|+.|.+|+.||+.. ..+..++. ....+.+|+.+ + ..
T Consensus 251 ~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-----------~~C~kt~l-~~S~cnDI~~~--~--~~ 314 (459)
T KOG0288|consen 251 LRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-----------AYCSKTVL-PGSQCNDIVCS--I--SD 314 (459)
T ss_pred hhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-----------hheecccc-ccccccceEec--c--ee
Confidence 999999999999999999988766699999999999999954 33333322 23455566655 2 67
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc----
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD---- 267 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---- 267 (451)
+++|..|+.|++||+++..+...+...+.|+++..++++..+.+++.|..+.+.|+++... ...+..
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI---------~~~~sA~g~k 385 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI---------RQTFSAEGFK 385 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccE---------EEEeeccccc
Confidence 8999999999999999999999999889999999999999999999999999999998642 222221
Q ss_pred CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC--eeEEEEEecCceeeeccCCCCccccc
Q 012996 268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP--VNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 268 ~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.....+.+.||| +.|+++||.||.|+||++.++++...+.....+ |++++|+|.|.+|++++.++.+.+|.
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 123488999999 999999999999999999999999988866554 99999999999999999999999994
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-33 Score=221.14 Aligned_cols=289 Identities=15% Similarity=0.212 Sum_probs=237.9
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
.+|.++++.+. |..+|.+|.+++.| .++.||-..+++.. ....|.+.|.|++.+.+.+++++|+.|.++++||+.+
T Consensus 7 ~GHERplTqiK--yN~eGDLlFscaKD-~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 7 QGHERPLTQIK--YNREGDLLFSCAKD-STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccCccccceEE--ecCCCcEEEEecCC-CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 35778888888 99999999999999 99999987555544 5577999999999999999999999999999999999
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeC-----CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
|+.+..++ ...+|..+.|+++|++++.+.. .+.|.++|++.... ......+...+..+...++.+.|.+.
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~----~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS----DIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh----hhcccCceEEecCCccceeeeeeccc
Confidence 99999987 5678999999999998876654 46799999975322 12234456667778899999999998
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeee-e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
+ ..|++|..||.|.+||++++.....- . |...|+.++++|+..++++++.|.+-++||..+. ..+.+
T Consensus 159 ~--~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---------~v~Kt 227 (327)
T KOG0643|consen 159 G--ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---------EVLKT 227 (327)
T ss_pred C--CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---------eeEEE
Confidence 8 89999999999999999998655443 3 8889999999999999999999999999999985 44555
Q ss_pred eccCCcceeEEEEec-CCEEEEEc-CCCc-------------EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 265 LSDHSKAVTCLAYST-GDLLISGS-EDGM-------------VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 265 ~~~~~~~v~~~~~~~-~~~l~s~~-~dg~-------------i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+. ...||++.+++| .+.++.|+ .+.. -++|++...+.+..+++|-+||++++|+|+|+..++|+
T Consensus 228 y~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGG 306 (327)
T KOG0643|consen 228 YT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGG 306 (327)
T ss_pred ee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCC
Confidence 54 467999999999 66555554 3321 23333334456778889999999999999999999999
Q ss_pred CCCCccccccCC
Q 012996 330 FSNPHTSSRRHG 341 (451)
Q Consensus 330 ~d~~i~iw~~~~ 341 (451)
.||.|++.-+..
T Consensus 307 EDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 307 EDGYVRLHHFDS 318 (327)
T ss_pred CCceEEEEEecc
Confidence 999999886553
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.8e-32 Score=227.53 Aligned_cols=268 Identities=21% Similarity=0.333 Sum_probs=219.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eee
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS 77 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~ 77 (451)
-.+.||+ .||.+++||. .|+....+.+|.++...+..+. -.+....+++++.| .++++|.++.+... ...
T Consensus 116 ~~Iltgs-YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~--~n~~~~~fvsas~D-qtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 116 KWILTGS-YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVI--KNSSSCLFVSASMD-QTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred ceEEEee-cCCeeEEEec-CCceEEEEecCCcceeeeEEEe--cCCccceEEEecCC-ceEEEEEecCchhhhhHHhHhc
Confidence 3578999 9999999995 5999999998887766555433 23333458888888 99999999876643 223
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-------------------------CcceeeeccccCCeeEEEEcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-------------------------GRLLKKWHAHYRAVTCLVFSE 132 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~ 132 (451)
+|...|.+++..++|..+++|+.|..|.||+..+ +.++.++.+|.++|.++.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 7899999999999999999999999999999321 234566789999999999997
Q ss_pred CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-
Q 012996 133 DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL- 211 (451)
Q Consensus 133 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 211 (451)
...+++++.|.+|+.||+.++ ....++. ....+.++..++.. .+|++|+.|..+++||.+++.-
T Consensus 271 -~~v~yS~SwDHTIk~WDletg-----------~~~~~~~-~~ksl~~i~~~~~~--~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETG-----------GLKSTLT-TNKSLNCISYSPLS--KLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred -CCceEeecccceEEEEEeecc-----------cceeeee-cCcceeEeeccccc--ceeeecCCCCceeecCCCCCCCc
Confidence 667999999999999999663 2222333 34577888888876 8999999999999999998632
Q ss_pred --eeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996 212 --LRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287 (451)
Q Consensus 212 --~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~ 287 (451)
.+.+. |.+-|.++.|+| +...|++|+.|+++++||++... .++..+.+|...|.++.|+.+.++++||
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------~plydI~~h~DKvl~vdW~~~~~IvSGG 407 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------APLYDIAGHNDKVLSVDWNEGGLIVSGG 407 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------CcceeeccCCceEEEEeccCCceEEecc
Confidence 22333 888999999999 45668889999999999999975 5788999999999999999888999999
Q ss_pred CCCcEEEEeCC
Q 012996 288 EDGMVRVWDPI 298 (451)
Q Consensus 288 ~dg~i~iwd~~ 298 (451)
.|.+|+|+...
T Consensus 408 aD~~l~i~~~~ 418 (423)
T KOG0313|consen 408 ADNKLRIFKGS 418 (423)
T ss_pred CcceEEEeccc
Confidence 99999999753
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=229.37 Aligned_cols=268 Identities=22% Similarity=0.364 Sum_probs=233.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecC-----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC-----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK- 76 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~- 76 (451)
.+|++|+ .||.|.|||..+|+..+.++-. .-+...|.|+. |+.|...+|+|+.| |.|+||.+.++++..+
T Consensus 226 qyLvsgS-vDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~--FSRDsEMlAsGsqD-GkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 226 QYLVSGS-VDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCIS--FSRDSEMLASGSQD-GKIKVWRIETGQCLRRF 301 (508)
T ss_pred ceEeecc-ccceeeeehhccchhhhhhhhhhhcceeecccceEEEe--ecccHHHhhccCcC-CcEEEEEEecchHHHHh
Confidence 5899999 9999999999999987655422 23567899999 99999999999999 9999999999998755
Q ss_pred -ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 77 -SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 77 -~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
..|...|+|+.|+.|+..+++++.|.+++|.-+.+|+++..+++|...|+...|++||.++++++.||+|++|+..+.
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt- 380 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT- 380 (508)
T ss_pred hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch-
Confidence 358899999999999999999999999999999999999999999999999999999999999999999999999663
Q ss_pred hhhhhhcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECCC
Q 012996 156 EECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPA 229 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~ 229 (451)
.++.++. +...+|.++...|... ..++++...++++|.++ .|+.++.+. ..+...+.+.+|.
T Consensus 381 ----------eC~~Tfk~~~~d~~vnsv~~~PKnp-eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 381 ----------ECLSTFKPLGTDYPVNSVILLPKNP-EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ----------hhhhhccCCCCcccceeEEEcCCCC-ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence 3333333 3456778887777654 78889999999999998 578888876 3456778889999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
|.++++.+.|+.++.|...++ ..-.++.-|...|..++-+| .+.|++-+.||.+++|.
T Consensus 449 GewiYcigED~vlYCF~~~sG---------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSG---------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecC---------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999999999999887 44567778999999999999 99999999999999995
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=8.8e-33 Score=258.73 Aligned_cols=284 Identities=19% Similarity=0.265 Sum_probs=237.0
Q ss_pred ceEEecceEeeccCcccCCC--CCCccEEEEECCCCc-------------eeeeecCCCCeeEEEECCCCcEEEEeccCC
Q 012996 38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQ-------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSG 102 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~--~d~g~i~vw~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 102 (451)
.|..++ .+|+|..+|++| .| |.+++|+.+.-. ......|.+.|.|+.|+|||.+||+|+.|+
T Consensus 15 ~IfSId--v~pdg~~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 15 SIFSID--VHPDGVKFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred eEEEEE--ecCCceeEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 378888 999999999999 77 888899875211 112334789999999999999999999999
Q ss_pred CEEEEEcCC------------------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccc
Q 012996 103 DIYMWEVAS------------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 103 ~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 164 (451)
.|.||+... .+....+.+|...|..++|+|++.+|++++.|++|.+|+..+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t----------- 160 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT----------- 160 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-----------
Confidence 999999762 135667889999999999999999999999999999999965
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-------cccceeEEEECCCCCEEEEEe
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-------FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~ 237 (451)
...+..+.+|.+.|.++.|.|-| ++|++-+.|++|++|+..+....+.+. .......+.|+|||.+|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~G--ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIG--KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEECCcc--CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 46788899999999999999998 999999999999999987766665554 234578899999999999874
Q ss_pred C----CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec------CC------------EEEEEcCCCcEEEE
Q 012996 238 R----DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST------GD------------LLISGSEDGMVRVW 295 (451)
Q Consensus 238 ~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~------------~l~s~~~dg~i~iw 295 (451)
. -..+.|.+-.+ +..-..+.||.+++.++.|+| .. .+|+|+.|++|.||
T Consensus 239 A~n~~~~~~~IieR~t---------Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGT---------WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred hccCCcceeEEEecCC---------ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 3 22566666544 355668889999999999987 12 68899999999999
Q ss_pred eCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 296 DPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 296 d~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
.....+++..+. ....+|.+++|+|||..|..+|.||+|.+..+....+..
T Consensus 310 ~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 310 NTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred ecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 998888877654 345699999999999999999999999999988665533
No 68
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=232.25 Aligned_cols=281 Identities=16% Similarity=0.230 Sum_probs=237.0
Q ss_pred CCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
.+|..+|.|++ =+|.. ..+++|+.| |.|++||+....+... ..|.+.|..|++.. ..+++++.|.+|+.|.+.
T Consensus 63 ~gHrdGV~~la--khp~~ls~~aSGs~D-G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 63 DGHRDGVSCLA--KHPNKLSTVASGSCD-GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred cccccccchhh--cCcchhhhhhccccC-ceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 57889999999 88877 778888888 9999999987665544 55888999999986 667888999999999975
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
- .++.++.+ ...+..+.-+..+..++|+|. .|.|||. ....++..+.-....|.++.|+|... .
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~-----------~R~~Pv~smswG~Dti~svkfNpvET-s 201 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDE-----------QRDNPVSSMSWGADSISSVKFNPVET-S 201 (433)
T ss_pred C-Ccceeeec-cccccccccccccccccccCc--eeeeccc-----------ccCCccceeecCCCceeEEecCCCcc-h
Confidence 4 46666643 355677777767778999987 4999998 34556777777788899999999875 7
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
+|++++.|+.|.+||++.+.++..+.....-+.++|+|.+-.|++|+.|..++.||++... .++....+|.+
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--------~p~~v~~dhvs 273 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--------RPLNVHKDHVS 273 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhc--------ccchhhcccce
Confidence 8888989999999999999999999988889999999988889999999999999999876 77889999999
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.|.++.||| |.-|++||.|.+|+||.++.+..-.... --...|.++.||.|.+|+++||+|+.|++|+....
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 999999999 9999999999999999998765433221 11247999999999999999999999999997643
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-32 Score=241.99 Aligned_cols=267 Identities=19% Similarity=0.290 Sum_probs=231.5
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ec-CC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SL-PA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~-~~ 80 (451)
+.||+|. ...|.+|+..++....-...+ ...|+++. |+++|.+||+|..+ |.|.|||......... .. |.
T Consensus 189 n~laVal--g~~vylW~~~s~~v~~l~~~~---~~~vtSv~--ws~~G~~LavG~~~-g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 189 NVLAVAL--GQSVYLWSASSGSVTELCSFG---EELVTSVK--WSPDGSHLAVGTSD-GTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred CeEEEEe--cceEEEEecCCCceEEeEecC---CCceEEEE--ECCCCCEEEEeecC-CeEEEEehhhccccccccCCcC
Confidence 3566665 458999999998865444332 68899999 99999999999999 9999999876554432 33 78
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
..|-+++|. +..+.+|+.++.|..+|++..+.... +.+|...|..++|++|+.+|++|+.|+.+.|||..
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~------- 331 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL------- 331 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-------
Confidence 999999998 77899999999999999998876655 88999999999999999999999999999999993
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG- 236 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 236 (451)
...+...+..|...|..++|+|-.. .+||+|+ .|++|++||..++..+..+...+.|.++.|++..+-|+++
T Consensus 332 ----~~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 332 ----SPEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ----CccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec
Confidence 4556788899999999999999865 6888865 6999999999999999999999999999999988777664
Q ss_pred -eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 237 -SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 237 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
..++.|.+|+..+. ..+..+.+|...|..++++| +..+++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEecccc---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 56779999999884 66788999999999999999 999999999999999998764
No 70
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.2e-32 Score=231.63 Aligned_cols=291 Identities=24% Similarity=0.321 Sum_probs=234.2
Q ss_pred ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---e-e---------------ecCCCCeeEEEECC
Q 012996 30 KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---V-K---------------SLPAEPIKPIAANS 90 (451)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---~-~---------------~~~~~~v~~~~~~~ 90 (451)
..+..|...+.+++ ++|++++.++++.+ |+|.=|++.++... . . ..|...+.+++.++
T Consensus 136 ~~~~~H~~s~~~va--ls~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVA--LSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eeeccccCcceEEE--eeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 34456778899999 99999999999999 99999998765521 0 0 14667899999999
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|+.|++|++ .....+.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~-----------~~~s~vet 281 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI-----------DQLSYVET 281 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEeh-----------hHhHHHHH
Confidence 9999999999999999999999999999999999999999988888999999999999999 44567888
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+.+|...|.+|....-. +.+.+|+.|+++++|++.....+....+.+.+.|++|- +...|++|+.+|.|.+|++...
T Consensus 282 lyGHqd~v~~IdaL~re--R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRE--RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HhCCccceeeechhccc--ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeeccc
Confidence 99999999999877665 66667779999999999665555545577789999986 4567899999999999999887
Q ss_pred CCCCCCCCceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----ceEEEeecCCCCeeEEEEEecC
Q 012996 251 SPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
++.......+.+... ..+..+|++++..| .+++++|+.+|.|++|-+..+ +++..+. -.+-|+.|+|+++|
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSG 437 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCC
Confidence 654332211111111 22335899999999 999999999999999998876 4556665 47889999999999
Q ss_pred ceeeec-cCCCCccccc
Q 012996 323 LYLNLG-SFSNPHTSSR 338 (451)
Q Consensus 323 ~~l~~~-s~d~~i~iw~ 338 (451)
+++++| +....+-=|.
T Consensus 438 k~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CEEEEecccccccceee
Confidence 966554 4444444443
No 71
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=218.28 Aligned_cols=280 Identities=18% Similarity=0.283 Sum_probs=220.4
Q ss_pred eeecCCCCCCceEEecceEeeccCccc-CCCCCCccEEEEECCCC-cee--eeecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 28 RYKSCASPPHGLACVGQRFLASSQLRE-QPSASSGSILYWSWSKP-QVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d~g~i~vw~~~~~-~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
.+.....+...|.+++ |||....++ +++.| |+|++|+++.. ... ....|.++|.+++|+.||..+++|+.|+.
T Consensus 19 d~ev~~pP~DsIS~l~--FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALA--FSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred ceecCCCcccchheeE--eccccCceEEecccC-CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 3444456778899999 999655555 56666 99999999863 332 22347899999999999999999999999
Q ss_pred EEEEEcCCCcceeeeccccCCeeEEEEccCCc--EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
+++||+.++ .+..+..|.++|.++.|-+... .|+||+.|.+|+.||.+. ..++.++. -...++++
T Consensus 96 ~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~-----------~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 96 AKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS-----------SNPVATLQ-LPERVYAA 162 (347)
T ss_pred eEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCC-----------CCeeeeee-ccceeeeh
Confidence 999999999 4567778999999999987554 899999999999999965 33333333 34456665
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (451)
..-. .+++.+..++.|.+|+++.+..... +. ..-.+.|++..++....+.|+-+|++.+..++.+.+ ...+.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFt 237 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFT 237 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCcee
Confidence 5433 5788999999999999977643322 22 566799999999999899999999999999988654 33333
Q ss_pred ceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996 259 MHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 259 ~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (451)
+++.+.- .+.-..|++|+|+| ...|+|+|.||++.+||-.....+++.+.|..+|++..|+.+|.++|.+
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 3332221 11124688999999 9999999999999999999999999999999999999999999999765
No 72
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.7e-31 Score=202.96 Aligned_cols=280 Identities=20% Similarity=0.262 Sum_probs=230.0
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCC--------------Ccee--eeecCCCCeeEEEECCCCcEEEEe
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--------------PQVE--VKSLPAEPIKPIAANSHGTYIAGG 98 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~--------------~~~~--~~~~~~~~v~~~~~~~~~~~l~~~ 98 (451)
....|..++ |+|.|.+.++++.. .+++|..... +.+. ....|.+.|.|.+|+|+|.++++|
T Consensus 31 dsqairav~--fhp~g~lyavgsns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 31 DSQAIRAVA--FHPAGGLYAVGSNS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred chhheeeEE--ecCCCceEEeccCC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 446677888 99999999999988 9999875421 1111 223478899999999999999999
Q ss_pred ccCCCEEEEEcCCCcc-----eeeeccccCCeeEEEEccC----CcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccce
Q 012996 99 GQSGDIYMWEVASGRL-----LKKWHAHYRAVTCLVFSED----GSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYL 168 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~ 168 (451)
+.|..|++..++...+ -..+.-|.+.|..++|..+ +..|++++. |..|.+-|. ......
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc-----------~~g~~~ 176 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDC-----------GRGQGF 176 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeec-----------CCCCcc
Confidence 9999999987654432 2356779999999999653 456666554 555666565 456678
Q ss_pred ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---c-----ccceeEEEECCCCCEEEEEeCCC
Q 012996 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---F-----PSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
+.+.+|++.|.++ +++++ ..+++|+.|.+|++||++-..++..+. + .+.|.+++..|.|++|++|..|.
T Consensus 177 ~a~sghtghilal-yswn~--~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 177 HALSGHTGHILAL-YSWNG--AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred eeecCCcccEEEE-EEecC--cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 8899999999887 45666 799999999999999999988887765 2 35799999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----CceEEEeecCCCCeeE
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----HNIVRMFRLAKGPVNN 315 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~ 315 (451)
...+||++.+ +.++.+..|...|.++.|+| ..|+++|+.|..|++-|+.. .-++.....|...+..
T Consensus 254 sc~lydirg~---------r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~ 324 (350)
T KOG0641|consen 254 SCMLYDIRGG---------RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQ 324 (350)
T ss_pred ceEEEEeeCC---------ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEE
Confidence 9999999987 66889999999999999999 89999999999999999753 2234456678999999
Q ss_pred EEEEecCceeeeccCCCCccccccC
Q 012996 316 ILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 316 l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+.|+|..-.+++.+.|.++.+|...
T Consensus 325 ~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 325 CRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999865
No 73
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=211.84 Aligned_cols=271 Identities=15% Similarity=0.227 Sum_probs=231.2
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEc
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEV 109 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 109 (451)
+|...+..++ |..+|..|++++.| +++.+|+++...... ...|.+.|-.++|+| ....+++++.|..|++||+
T Consensus 18 ~~~~~v~Sv~--wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 18 GHVQKVHSVA--WNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhcceEEE--EcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 4556667777 99999999999999 999999998765432 245778899999988 5678999999999999999
Q ss_pred CCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 110 ASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
+++++........+.+ -+.|+|+|.+++.++.|..|.+.|.++. ..... ......+..++|+.++
T Consensus 95 r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-----------~~~~~-~~~~~e~ne~~w~~~n-- 159 (313)
T KOG1407|consen 95 RSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-----------KIVNE-EQFKFEVNEISWNNSN-- 159 (313)
T ss_pred ccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-----------ceeeh-hcccceeeeeeecCCC--
Confidence 9999998886555554 5789999999999999999999999652 22222 2234566778888555
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
.+++.....|+|.|......+++..+. |+....|+.|+|+|++|++|+.|..+.+||+... -+...+..+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---------iC~R~isRl 230 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---------ICERCISRL 230 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---------hhheeeccc
Confidence 677777778999999999999999998 9999999999999999999999999999999875 556778889
Q ss_pred CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
.-+|..+.||. |++||+||.|..|-|=++.+|..+..++. .++...++|+|...+||.+..|.
T Consensus 231 dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~-~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 231 DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC-EGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec-cCCceeEEecCCCceeeEEecCC
Confidence 99999999999 99999999999999999999999999974 88999999999999999887653
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-32 Score=219.27 Aligned_cols=239 Identities=23% Similarity=0.365 Sum_probs=210.4
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc--EEEEeeCCCcEEEeeCcchh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS--FLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~ 155 (451)
.|..+|++++.+ +.++|+|+.|-+|+|||+.....+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+.
T Consensus 41 aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~---- 114 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV---- 114 (362)
T ss_pred ccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc----
Confidence 478899999996 89999999999999999999999999999999999999998664 8999999999999999
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (451)
.....+.++.+|.+.|+.++++|.+ .+.++.+.|+.++.||+-+|+.-...+.......+.|+|.|.+|++
T Consensus 115 -------~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 115 -------GSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred -------CCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 5678899999999999999999998 8999999999999999999998887777777777999999999998
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (451)
+..+ .|-+|.+.+... ...+ .....+.++.|-.+..|++|+.|+.|.+||..+..++..+.+|...|-+
T Consensus 186 ~~~~-~i~i~q~d~A~v---------~~~i-~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 186 SGRN-KIDIYQLDNASV---------FREI-ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKD 254 (362)
T ss_pred Eecc-EEEEEecccHhH---------hhhh-hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheee
Confidence 8765 588888877531 1111 1224577777766899999999999999999999999999999999999
Q ss_pred EEEE--ecCceeeeccCCCCccccccCCC
Q 012996 316 ILVV--RRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 316 l~~s--~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
+.+- |++.+|+++|.||.|++||++..
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9854 67899999999999999998854
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-31 Score=212.33 Aligned_cols=277 Identities=19% Similarity=0.239 Sum_probs=233.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
-+|.+++ .|.++.||-...|+.+.++.+|. ..|.|++ ..-+.+++++++.| .++++||+.++++........+
T Consensus 23 DLlFsca-KD~~~~vw~s~nGerlGty~GHt---GavW~~D--id~~s~~liTGSAD-~t~kLWDv~tGk~la~~k~~~~ 95 (327)
T KOG0643|consen 23 DLLFSCA-KDSTPTVWYSLNGERLGTYDGHT---GAVWCCD--IDWDSKHLITGSAD-QTAKLWDVETGKQLATWKTNSP 95 (327)
T ss_pred cEEEEec-CCCCceEEEecCCceeeeecCCC---ceEEEEE--ecCCcceeeecccc-ceeEEEEcCCCcEEEEeecCCe
Confidence 4788999 99999999988999999998654 7799999 88899999999999 9999999999999998888999
Q ss_pred eeEEEECCCCcEEEEecc-----CCCEEEEEcC-------CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 83 IKPIAANSHGTYIAGGGQ-----SGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
|..+.|+++|++++.... .+.|.++|++ +.++...+..+...++..-|.|-+++|++|..||.|.+||
T Consensus 96 Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~d 175 (327)
T KOG0643|consen 96 VKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYD 175 (327)
T ss_pred eEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEE
Confidence 999999999998877643 4679999998 3456777888889999999999999999999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
++++ ...+.....|...|++++++++. .++++++.|.+-++||.++.+.+.++....++++.+++|..
T Consensus 176 a~~g----------~~~v~s~~~h~~~Ind~q~s~d~--T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 176 ARTG----------KELVDSDEEHSSKINDLQFSRDR--TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred cccC----------ceeeechhhhccccccccccCCc--ceEEecccCccceeeeccceeeEEEeeecccccceeccccc
Confidence 9663 34566677899999999999998 89999999999999999999999999999999999999988
Q ss_pred CEEEEEeCCCcEEEEEc--cCCCCCCCCC---CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 231 HVFYAGSRDGSIYIAAL--NAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~--~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
..++.|+.....-+--. +.++.....+ -.+.+..+++|-++|++++|+| |...++|+.||.|++.-..
T Consensus 244 d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 87777764433222222 2221111110 0134677899999999999999 9999999999999998554
No 76
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=9.6e-31 Score=242.69 Aligned_cols=274 Identities=11% Similarity=0.131 Sum_probs=198.7
Q ss_pred CCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc--------ceeeeccccCCe
Q 012996 56 PSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR--------LLKKWHAHYRAV 125 (451)
Q Consensus 56 ~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v 125 (451)
||.. +.|++|+....... ....|.+.|.+++|+|+ +++|++|+.||.|+|||+.++. .+..+.+|...|
T Consensus 50 GG~~-gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLI-GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCce-eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4444 89999998665433 33568899999999996 7899999999999999997642 344678899999
Q ss_pred eEEEEccCCcE-EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996 126 TCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW 204 (451)
Q Consensus 126 ~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iw 204 (451)
.+++|+|++.. |++++.|+.|++||++++ .....+. |...|.+++|++++ .+|++++.|+.|+||
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-----------~~~~~i~-~~~~V~SlswspdG--~lLat~s~D~~IrIw 194 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENE-----------KRAFQIN-MPKKLSSLKWNIKG--NLLSGTCVGKHMHII 194 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------cEEEEEe-cCCcEEEEEECCCC--CEEEEEecCCEEEEE
Confidence 99999998875 578999999999999652 2233333 56789999999998 899999999999999
Q ss_pred EcCCCceeeeee-cccceeE-----EEECCCCCEEEEEeCCC----cEEEEEccCCCCCCCCCCceeeee--eccCCcce
Q 012996 205 SLLKGRLLRNIV-FPSVIDA-----IALDPAEHVFYAGSRDG----SIYIAALNAESPSTSSYGMHIIGS--LSDHSKAV 272 (451)
Q Consensus 205 d~~~~~~~~~~~-~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v 272 (451)
|+++++.+..+. |.+.+.+ ..|++++.+|++++.++ .|++||++... .++.. +..+.+.+
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPL 266 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccce
Confidence 999999888776 5544332 34568989999988774 79999998643 22333 33333444
Q ss_pred eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCccc
Q 012996 273 TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD 349 (451)
Q Consensus 273 ~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 349 (451)
......+ +.++++|+.|++|++|++..+. +..+. .+..++.+++|.|+.. +-...--..|++.+.......|+.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~--~dv~~cEi~R~~kl~~~~~i~pis 343 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI--CDVYKCEIGRVYKNENNSSIRPIS 343 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc--cCchhhhHhHHhhhcCCCeEEEEE
Confidence 4444445 8899999999999999998764 33333 2457899999999643 222222345667665433344444
Q ss_pred cccccc
Q 012996 350 KYVTSA 355 (451)
Q Consensus 350 ~~~~~~ 355 (451)
-.++..
T Consensus 344 f~vPRk 349 (568)
T PTZ00420 344 FYVPRK 349 (568)
T ss_pred EEeccC
Confidence 444444
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-32 Score=215.55 Aligned_cols=264 Identities=15% Similarity=0.254 Sum_probs=217.8
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEE
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAA 88 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~ 88 (451)
..|.+.|-++..++-+..+.... -..++..++ |++.....+.++..||.+++||...+..++. ..|...|.++.|
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d-~~D~LfdV~--Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdw 112 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD-TEDGLFDVA--WSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDW 112 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee-cccceeEee--ecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEecc
Confidence 36889999987666555554332 457788888 9987665544444349999999765554433 448899999999
Q ss_pred CC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccc
Q 012996 89 NS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHL 166 (451)
Q Consensus 89 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 166 (451)
++ ++..+++++.|++|++|+...++.+.++.+|...|....|+| .++.+++++.||.+++||++. ..+
T Consensus 113 n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~----------~gk 182 (311)
T KOG0277|consen 113 NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS----------PGK 182 (311)
T ss_pred ccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC----------CCc
Confidence 98 566778889999999999999999999999999999999999 788999999999999999965 233
Q ss_pred ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEE
Q 012996 167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIY 243 (451)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~ 243 (451)
.+. +..|...|.++.|+.-.. +.++||+.|+.|++||+++-+ ++..+. |.-.|..+.|+| ....|++++.|-+++
T Consensus 183 ~~~-i~ah~~Eil~cdw~ky~~-~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 183 FMS-IEAHNSEILCCDWSKYNH-NVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred eeE-EEeccceeEeecccccCC-cEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 333 788999999999987654 899999999999999998754 455555 788999999999 467889999999999
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeC
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~ 297 (451)
+||...+. ..+.+...|+.-|..+.|++ +.++|+++.|+.+.||+.
T Consensus 261 iw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQD--------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccch--------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99998664 44667778999999999999 899999999999999984
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=242.57 Aligned_cols=318 Identities=18% Similarity=0.301 Sum_probs=267.4
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EP 82 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~ 82 (451)
-++.|+ .+|.+.|||+.+++.+.+++.+. ..|+++. -+|.-..+|.|..+ |+|.++++..++......+. ++
T Consensus 174 KIvvGs-~~G~lql~Nvrt~K~v~~f~~~~---s~IT~ie--qsPaLDVVaiG~~~-G~ViifNlK~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 174 KIVVGS-SQGRLQLWNVRTGKVVYTFQEFF---SRITAIE--QSPALDVVAIGLEN-GTVIIFNLKFDKILMSFKQDWGR 246 (910)
T ss_pred eEEEee-cCCcEEEEEeccCcEEEEecccc---cceeEec--cCCcceEEEEeccC-ceEEEEEcccCcEEEEEEccccc
Confidence 467788 89999999999999999998765 7788888 88888999999988 99999999999998888775 99
Q ss_pred eeEEEECCCCcE-EEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh---
Q 012996 83 IKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE--- 157 (451)
Q Consensus 83 v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--- 157 (451)
|++++|..||+. +|+|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++...
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchh
Confidence 999999999875 5667777999999999888776664 88899999999998888999999988888744311000
Q ss_pred ---------hh------------------------------------hh---------c---------------------
Q 012996 158 ---------CE------------------------------------SQ---------R--------------------- 162 (451)
Q Consensus 158 ---------~~------------------------------------~~---------~--------------------- 162 (451)
.+ .. .
T Consensus 327 LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~ 406 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENA 406 (910)
T ss_pred eeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccc
Confidence 00 00 0
Q ss_pred -----------------------------------------------------------------------ccccceecc
Q 012996 163 -----------------------------------------------------------------------ASHLYLHSF 171 (451)
Q Consensus 163 -----------------------------------------------------------------------~~~~~~~~~ 171 (451)
.+......+
T Consensus 407 RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf 486 (910)
T KOG1539|consen 407 REKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF 486 (910)
T ss_pred hhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccc
Confidence 000011222
Q ss_pred ---cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 172 ---TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 172 ---~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
..|..+|++++...-+ +.+++++.+|.+.+||+.+...+..+.....+.++..+.....++++..|-.|+++|..
T Consensus 487 ~~~~ah~~~V~gla~D~~n--~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTN--RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCccccCceeEEEecCCC--ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 3577788888775554 88999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 327 (451)
+. +.+..+.+|...|++++||| |++|++++.|++|++||+.++.++..+.. ..+.+.+.|||+|.+|||
T Consensus 565 t~---------kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-d~~~~sls~SPngD~LAT 634 (910)
T KOG1539|consen 565 TR---------KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-DSPCTSLSFSPNGDFLAT 634 (910)
T ss_pred hh---------hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-CCcceeeEECCCCCEEEE
Confidence 86 56778999999999999999 99999999999999999999999988865 789999999999999999
Q ss_pred ccCC-CCccccccC
Q 012996 328 GSFS-NPHTSSRRH 340 (451)
Q Consensus 328 ~s~d-~~i~iw~~~ 340 (451)
+..| .-|++|.-.
T Consensus 635 ~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 635 VHVDQNGIYLWSNK 648 (910)
T ss_pred EEecCceEEEEEch
Confidence 9988 669999744
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=248.00 Aligned_cols=279 Identities=21% Similarity=0.350 Sum_probs=243.8
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 113 (451)
...+.+.. |. ..+++++..+ ++|++|+..++..... ..|.+.|.++++...+.+|++|+.|.++++||+.+|.
T Consensus 208 ~~~~~~~q--~~--~~~~~~~s~~-~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 208 DHVVLCLQ--LH--DGFFKSGSDD-STLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred cchhhhhe--ee--cCeEEecCCC-ceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 34555555 55 5667777777 9999999988876654 5689999999998888999999999999999999999
Q ss_pred ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
+..++.+|.+.|.++... +..+++|+.|.+|++|++. ....+..+.+|.++|.++... + .+++
T Consensus 283 C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~-----------n~~~l~l~~~h~~~V~~v~~~--~--~~lv 345 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVT-----------NGACLNLLRGHTGPVNCVQLD--E--PLLV 345 (537)
T ss_pred EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEecc-----------CcceEEEeccccccEEEEEec--C--CEEE
Confidence 999999999999999876 4578889999999999994 466788888899999999987 3 7999
Q ss_pred EeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 194 SASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
+|+.|++|++||+.+++++..+. |...|.++.+.+. ..+++|+.|+.|++||+.+.. +++.++.+|..-+
T Consensus 346 sgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 346 SGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLV 416 (537)
T ss_pred EEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCcccc
Confidence 99999999999999999999998 8999999988776 899999999999999999863 5678899999999
Q ss_pred eEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996 273 TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 273 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
..+.+. +++|++++.||+|++||..++++++++.+ |.+.|+.+++. ...+++++.||.+.+|++....+...+
T Consensus 417 ~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 417 SSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccccc-cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 777665 79999999999999999999999999998 67888888887 568899999999999999877655443
No 80
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=216.27 Aligned_cols=270 Identities=20% Similarity=0.332 Sum_probs=233.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.+|++++ .||.-.+-+-+||..+.+|.+|. ..|.... ...+....|+++.| -+.+|||.-++.......|..-
T Consensus 30 ~flisa~-kd~~pmlr~g~tgdwigtfeghk---gavw~~~--l~~na~~aasaaad-ftakvw~a~tgdelhsf~hkhi 102 (334)
T KOG0278|consen 30 YFLISAS-KDGKPMLRNGDTGDWIGTFEGHK---GAVWSAT--LNKNATRAASAAAD-FTAKVWDAVTGDELHSFEHKHI 102 (334)
T ss_pred eEEEEec-cCCCchhccCCCCCcEEeeeccC---cceeeee--cCchhhhhhhhccc-chhhhhhhhhhhhhhhhhhhhe
Confidence 5788999 99999999999999999998765 5566555 66666777777777 9999999999988888889999
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
|.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++
T Consensus 103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg------- 175 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG------- 175 (334)
T ss_pred eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC-------
Confidence 9999999999999999999999999998764 56778999999999999998899999999999999999763
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCc
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
..++++. ...+|+++.+++++ .+++....+.|.+||..+...+..+..+..|.+..++|+...+++|+.|..
T Consensus 176 ----t~v~sL~-~~s~VtSlEvs~dG---~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~ 247 (334)
T KOG0278|consen 176 ----TEVQSLE-FNSPVTSLEVSQDG---RILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK 247 (334)
T ss_pred ----cEEEEEe-cCCCCcceeeccCC---CEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceE
Confidence 3344443 45688999999997 456666678899999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 242 IYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
++.||..++. .+.. .++|.++|.|+.|+| |...++||.||+|++|....++..
T Consensus 248 ~~kfDy~Tge---------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 248 VYKFDYNTGE---------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEeccCCc---------eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999984 2333 489999999999999 999999999999999998765543
No 81
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-31 Score=215.17 Aligned_cols=275 Identities=17% Similarity=0.302 Sum_probs=223.1
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 113 (451)
.+...|..+. |+|.++.|++++.| |++++|++..........|..++.+++|.+ ...+++|+.||.|+.+|+.++.
T Consensus 11 pP~d~IS~v~--f~~~~~~LLvssWD-gslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVK--FSPSSSDLLVSSWD-GSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEE--EcCcCCcEEEEecc-CcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 4567888888 99999999999998 999999999988888888999999999987 5568899999999999998876
Q ss_pred ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
.. .+..|..+|.||.+++....+++||.|++|++||.+. ......+. ....|.++... + +.|+
T Consensus 87 ~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-----------~~~~~~~d-~~kkVy~~~v~--g--~~Lv 149 (323)
T KOG1036|consen 87 ED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-----------KVVVGTFD-QGKKVYCMDVS--G--NRLV 149 (323)
T ss_pred ce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-----------cccccccc-cCceEEEEecc--C--CEEE
Confidence 55 4557999999999999888899999999999999964 11222222 23377776653 3 6899
Q ss_pred EeeCCCcEEEEEcCCCceeeee---ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC-CCCCCCceeeeeecc--
Q 012996 194 SASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP-STSSYGMHIIGSLSD-- 267 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~-- 267 (451)
+|+.+..+.+||+++....... .....+.++++-|++.-+++++-||+|.+=.++.... ....+.+++......
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCc
Confidence 9999999999999987655533 2677899999999999999999999998876665421 111222222211111
Q ss_pred -CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 268 -HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 268 -~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
--.+|++|+|+| ...|+||+.||.|.+||+.+.+.+..+......|..++|+.+|..||+++
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 125899999999 99999999999999999999999999988888999999999999999985
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=3e-31 Score=223.98 Aligned_cols=268 Identities=22% Similarity=0.333 Sum_probs=233.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-eeeeecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~~~ 81 (451)
..+.+|+ .|..+.++|..+++.+..+++|. ..|+.+. |+|+...+++++.| ..|+||...... ......|.+
T Consensus 232 ~~ilTGG-~d~~av~~d~~s~q~l~~~~Gh~---kki~~v~--~~~~~~~v~~aSad-~~i~vws~~~~s~~~~~~~h~~ 304 (506)
T KOG0289|consen 232 SKILTGG-EDKTAVLFDKPSNQILATLKGHT---KKITSVK--FHKDLDTVITASAD-EIIRVWSVPLSSEPTSSRPHEE 304 (506)
T ss_pred CcceecC-CCCceEEEecchhhhhhhccCcc---eEEEEEE--eccchhheeecCCc-ceEEeeccccccCccccccccc
Confidence 3578899 99999999999999998887654 6666666 99999999999998 999999987544 334566899
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc--ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+|+.+..+|.|.||++++.||...+.|++++..+..... ..-.+++.+|+|||..|.+|..||.|+|||+..
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks------ 378 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS------ 378 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC------
Confidence 999999999999999999999999999999998876643 234589999999999999999999999999954
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEe
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~ 237 (451)
...+..|.+|+++|..+.|+.+| .+|++++.|+.|++||+|..+...++..+. .+.+++|++.|.+|+.++
T Consensus 379 -----~~~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 379 -----QTNVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred -----ccccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 44678899999999999999999 899999999999999999999888887544 599999999999999998
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
.+=.|++++-.+.. |..+..+..|.+..+++.|.. ..+++++|.|..++++.+
T Consensus 452 ~~l~Vy~~~k~~k~-------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 452 SDLQVYICKKKTKS-------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEEEeccccc-------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 88888888755543 677888889999999999998 999999999999988764
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.4e-32 Score=232.43 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=225.4
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee------ecCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 108 (451)
+...|.+++ +.|.|..+++|+.| .+|++||+.......+ ......|.++.|++.|..|++.+.....+|+|
T Consensus 166 gtk~Vsal~--~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 166 GTKIVSALA--VDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred CceEEEEee--ecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 456788888 99999999999999 9999999986543322 12356899999999999998888888999999
Q ss_pred cCCCcceee-------------eccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 109 VASGRLLKK-------------WHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 109 ~~~~~~~~~-------------~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
- .|..+.. -++|...++|.+|+|+ ...|+|++.||++++||+......... .....-.+.
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-----ik~k~~~g~ 316 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-----IKTKPAGGK 316 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-----EeeccCCCc
Confidence 4 4433322 2689999999999994 467999999999999999763321110 001112345
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce--eeeee--ccc--ceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNIV--FPS--VIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~--~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
..+++.++|++++ .+|++|+.||.|.+|+..+... ...+. |.. .|+|+.|+++|++|++-+.|+.+++||++
T Consensus 317 Rv~~tsC~~nrdg--~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 317 RVPVTSCAWNRDG--KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccCceeeecCCCc--chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 5678899999999 8999999999999999865422 22222 544 89999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeeeccC--CcceeEEEEec-CCEEEEEcC------CCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 249 AESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLISGSE------DGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
..+ +++....+- ..+-+.++||| ..+|++|.. .|++.+||..+.+.++++......|..+.|+
T Consensus 395 q~k--------kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh 466 (641)
T KOG0772|consen 395 QFK--------KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH 466 (641)
T ss_pred ccc--------cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec
Confidence 876 444444332 34667899999 889998853 5789999999999999999888999999999
Q ss_pred ecCceeeeccCCCCccccc
Q 012996 320 RRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 320 ~~~~~l~~~s~d~~i~iw~ 338 (451)
|.-+.|..|+.||.+.++=
T Consensus 467 pkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 467 PKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred chhhheeeecCCCceEEEE
Confidence 9999999999999987663
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-32 Score=218.50 Aligned_cols=285 Identities=16% Similarity=0.226 Sum_probs=230.4
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------Cc-------------eeeeecCCCCeeEEEECCCCcE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQ-------------VEVKSLPAEPIKPIAANSHGTY 94 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------~~-------------~~~~~~~~~~v~~~~~~~~~~~ 94 (451)
.|.....+.+ |++||.++|+|+.| ..|++.|++. .. +.....|.++|+++.|+|....
T Consensus 110 ~HK~~cR~aa--fs~DG~lvATGsaD-~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 110 SHKSPCRAAA--FSPDGSLVATGSAD-ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred ecccceeeee--eCCCCcEEEccCCc-ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4556666667 99999999999999 9999999861 11 1122337899999999999999
Q ss_pred EEEeccCCCEEEEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996 95 IAGGGQSGDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172 (451)
Q Consensus 95 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 172 (451)
|++|+.|++|++||+......+.++ ....+|.++.|+|.|.+|+.|.....+++||+.+... ......-.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qc--------fvsanPd~ 258 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQC--------FVSANPDD 258 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeE--------eeecCccc
Confidence 9999999999999987654443332 2456899999999999999999999999999976311 11112345
Q ss_pred CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--c-ccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
.|++.|+++.+++.+ ++.++++.||.|++||--+++++.++. | ...|.+..|..+++++++.+.|..+++|.+.+
T Consensus 259 qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 799999999999998 899999999999999999999999887 3 56799999999999999999999999999999
Q ss_pred CCCCCCCCCceeeeeeccC-----CcceeEEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEee-cCCCCeeEEEEEec
Q 012996 250 ESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRR 321 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~ 321 (451)
+. .+..+.|- ..--+...|+. .+|++.-.. .+.++-||.++...+..+. +|.+++..+.-||.
T Consensus 337 ~R---------~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 337 GR---------MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred Cc---------eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 74 34444332 11223445666 777776654 5779999999988776654 79999999999999
Q ss_pred CceeeeccCCCCccccccC
Q 012996 322 PLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 322 ~~~l~~~s~d~~i~iw~~~ 340 (451)
+.-+.++|.|-..++|-.+
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 9999999999999999755
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.2e-31 Score=242.06 Aligned_cols=270 Identities=23% Similarity=0.400 Sum_probs=230.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeee-eecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLR-YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~ 80 (451)
..+++++ .|++|++||..++..+.. +.+ |..+|.+++ |...+..+++|+.| .+++|||..++++.... .|.
T Consensus 219 ~~~~~~s-~~~tl~~~~~~~~~~i~~~l~G---H~g~V~~l~--~~~~~~~lvsgS~D-~t~rvWd~~sg~C~~~l~gh~ 291 (537)
T KOG0274|consen 219 GFFKSGS-DDSTLHLWDLNNGYLILTRLVG---HFGGVWGLA--FPSGGDKLVSGSTD-KTERVWDCSTGECTHSLQGHT 291 (537)
T ss_pred CeEEecC-CCceeEEeecccceEEEeeccC---CCCCceeEE--EecCCCEEEEEecC-CcEEeEecCCCcEEEEecCCC
Confidence 4678888 999999999999998876 665 556677776 77667888888888 99999999999987654 488
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
+.|.++... +.++++|+.|.+|++|++.++..+..+.+|.++|.++..+ +.++++|+.||+|++||+.
T Consensus 292 stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-------- 359 (537)
T KOG0274|consen 292 SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-------- 359 (537)
T ss_pred ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh--------
Confidence 999998885 5678889999999999999999999999999999999998 7899999999999999994
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeeec-ccceeEEEECCCCCEEEEEeC
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIVF-PSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~ 238 (451)
...+++.+.+|...|+++.+... ..+++|+.|++|++||+++. +++..+.+ ...+.. +...+++|++++.
T Consensus 360 ---~~~cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~a 431 (537)
T KOG0274|consen 360 ---TGKCLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSA 431 (537)
T ss_pred ---hceeeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccc
Confidence 47789999999999999987664 58999999999999999999 88888874 444433 3447889999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
|+.|++||.... ..+..+.+ |...|+.+++. ...+++++.||++++||++++.+.+.+-.+
T Consensus 432 D~~Ik~WD~~~~---------~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 432 DGTIKLWDAEEG---------ECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred cccEEEeecccC---------ceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 999999999987 45667777 67888888775 578999999999999999999998877433
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-31 Score=208.69 Aligned_cols=245 Identities=17% Similarity=0.286 Sum_probs=216.3
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee--eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~ 153 (451)
..|...|.+++|+.+|..|++|+.|+++.+|++...+.... ..+|.+.|-.++|+| +...|++++.|.+|++||++.
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 34678999999999999999999999999999988765543 478999999999998 677899999999999999965
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (451)
.++........+.+ -+.|+|++ .+++.++.|..|.+.|.++.+.....+....+.-++|+.++.+|
T Consensus 97 -----------~k~~~~i~~~~eni-~i~wsp~g--~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 97 -----------GKCTARIETKGENI-NITWSPDG--EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLF 162 (313)
T ss_pred -----------CcEEEEeeccCcce-EEEEcCCC--CEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEE
Confidence 34455444444444 46788888 89999999999999999999999998888899999999989999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (451)
+.....|.|.|...... +++..+..|.....||.|+| |++||+|+.|..+.+||+...-+++.+..+.-|
T Consensus 163 flt~GlG~v~ILsypsL---------kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSL---------KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred EEecCCceEEEEecccc---------ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence 98888899999988764 67889999999999999999 999999999999999999999999999999999
Q ss_pred eeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 313 VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 313 v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
|..|.||.||++||+||.|..|-|-+++++..
T Consensus 234 VRTlSFS~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 234 VRTLSFSHDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred eEEEEeccCcceeeccCccceEEeEecccCCe
Confidence 99999999999999999999998877776543
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=2.4e-30 Score=218.53 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=237.8
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 114 (451)
..++..+. ..|....+++||.| ..+.++|...++.. ...+|...|+.+.|+|+...+++++.|..|+||.......
T Consensus 219 ~pgi~ald--~~~s~~~ilTGG~d-~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 219 TPGITALD--IIPSSSKILTGGED-KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCCeeEEe--ecCCCCcceecCCC-CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 34566666 77777888899988 99999999888765 4466889999999999999999999999999999988888
Q ss_pred eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
......|.++|+.+..+|.|.||++++.||+..+.|++++ .......-....-.+++.+|+|+| .++.+
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---------~~lt~vs~~~s~v~~ts~~fHpDg--Lifgt 364 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---------SQLTVVSDETSDVEYTSAAFHPDG--LIFGT 364 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC---------cEEEEEeeccccceeEEeeEcCCc--eEEec
Confidence 8888999999999999999999999999999999999763 222222222234568999999999 89999
Q ss_pred eeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcce
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV 272 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v 272 (451)
|..||.|+|||+.++..+..|. |.++|..++|+.+|-+|++++.|+.|++||++.... ..++. .....+
T Consensus 365 gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---------~kt~~l~~~~~v 435 (506)
T KOG0289|consen 365 GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---------FKTIQLDEKKEV 435 (506)
T ss_pred cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---------cceeeccccccc
Confidence 9999999999999999888888 899999999999999999999999999999998641 22222 223479
Q ss_pred eEEEEec-CCEEEEEcCCCcEEEEeC--CCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 273 TCLAYST-GDLLISGSEDGMVRVWDP--ITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 273 ~~~~~~~-~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
.++.|.+ |.+|+.++.|=.|++++- .+..++..+..|.+..+++.|....++++++|.|..++++.+
T Consensus 436 ~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 9999999 999999988866766663 367788889999999999999999999999999999887653
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3e-29 Score=204.27 Aligned_cols=276 Identities=15% Similarity=0.168 Sum_probs=222.5
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCC
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASG 112 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~ 112 (451)
...|.++. |+++|.++++++.| ..+++||..++....... +.-.|..++|....+.++.++. |.+|+..++.+.
T Consensus 14 ~~~i~sl~--fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 14 NGKINSLD--FSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN 90 (311)
T ss_pred CCceeEEE--ecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecC
Confidence 35677788 99999999997777 899999998887765544 3457888889776677776666 789999999999
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+.++.|.+|...|++++.+|-+..+++++.|++|++||++. ..+...+... .-..++|.|.| -++
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-----------~~cqg~l~~~--~~pi~AfDp~G--Lif 155 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-----------KKCQGLLNLS--GRPIAAFDPEG--LIF 155 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-----------CCCceEEecC--CCcceeECCCC--cEE
Confidence 99999999999999999999889999999999999999964 1122222212 22346788887 788
Q ss_pred EEeeCCCcEEEEEcCCC--ceeeeee----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 193 VSASEDRTCKVWSLLKG--RLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~--~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
|++.....|++||++.- .+...+. .....+.+.|+|+|++++.++..+.+++.|.-.+. ...++.
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs 226 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFS 226 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEe
Confidence 88888879999999863 3444444 24678899999999999999999999999998874 344555
Q ss_pred cCCcce---eEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 267 DHSKAV---TCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 267 ~~~~~v---~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.+...- -..+|+| ++++++|+.||+|.+|+++++..+..+++ +.++++++.|+|.-..++++ +..+.+|-..
T Consensus 227 ~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 227 GYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred eccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 554322 5678899 99999999999999999999999999998 68899999999988777776 4667777654
No 89
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.98 E-value=2.6e-31 Score=228.45 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=238.9
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEE
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 108 (451)
|..-|.++. ++...+++.++|. |.|+|||+....-. ... .....|.++...|||+.|++|+.-.++.|||
T Consensus 418 HGEvVcAvt--IS~~trhVyTgGk--gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 418 HGEVVCAVT--ISNPTRHVYTGGK--GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred cCcEEEEEE--ecCCcceeEecCC--CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 445566666 8889999999998 89999999754321 111 1356799999999999999999999999999
Q ss_pred cCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 109 VASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 109 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
+..... ...+....-.+.+++.+||.+..+++..||.|.|||+. ....++.|.+|+..+.||.++++
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-----------nq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-----------NQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----------cceeeecccCCCCCceeEEecCC
Confidence 976644 33444444567789999999999999999999999994 46788999999999999999999
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
| ..|.+|+.|.+|+.||++.++.+....+.+.|.++.++|.+.++++|-.++.+.+....... ...+.
T Consensus 563 G--tklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlh 630 (705)
T KOG0639|consen 563 G--TKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLH 630 (705)
T ss_pred C--ceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeec
Confidence 9 89999999999999999999999998899999999999999999999999999988776643 44667
Q ss_pred cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
-|...|.++.|.+ |+++++.+.|+.+..|...-|..+...+. .++|.++.+|.|.+|++|||.|....+|.+
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 7999999999999 99999999999999999999988888765 678999999999999999999988777653
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=7.5e-31 Score=223.24 Aligned_cols=254 Identities=16% Similarity=0.203 Sum_probs=209.6
Q ss_pred eeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCc----------ceeeeccccCCeeEEEEcc-CCcEEEEeeC
Q 012996 75 VKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGR----------LLKKWHAHYRAVTCLVFSE-DGSFLISGSE 142 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~ 142 (451)
.+..|.+.|+.+.+.|.. ..+|+++..+.|+|||..... +-..+.+|.+.-.+++|++ ..-.|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 445689999999999965 556777888999999986432 1236789998888999998 4457999999
Q ss_pred CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--Cceeeeee-ccc
Q 012996 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIV-FPS 219 (451)
Q Consensus 143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~-~~~ 219 (451)
|+.|++||+...... .....+...+.+|...|..++|++-.. .++++++.|+.+.|||+|+ .++..... |..
T Consensus 199 d~~i~lwdi~~~~~~----~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 199 DHTICLWDINAESKE----DKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred CCcEEEEeccccccC----CccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 999999999764322 122345667899999999999998765 7899999999999999995 34434443 889
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996 220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd 296 (451)
.+.|++|+| ++..||+|+.|++|.+||+++.. .++.++.+|...|.++.|+| ...|++++.|+.+.|||
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLN--------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 999999999 67788999999999999999976 67889999999999999999 88999999999999999
Q ss_pred CCC--------------CceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCC
Q 012996 297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~ 341 (451)
+.. .+++..-.+|.+.|..+.|+|... .+++++.|+.+.||+...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 864 134566778999999999999664 568899999999999764
No 91
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-30 Score=211.91 Aligned_cols=273 Identities=22% Similarity=0.296 Sum_probs=233.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEEC------CCCc----
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW------SKPQ---- 72 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~------~~~~---- 72 (451)
.++.+++ .|.+.+||.+++|+++.+|.+|. +.|.++. |++.+.++++++.| ++.+||.. ..+.
T Consensus 161 pi~gtAS-ADhTA~iWs~Esg~CL~~Y~GH~---GSVNsik--fh~s~~L~lTaSGD-~taHIW~~av~~~vP~~~a~~~ 233 (481)
T KOG0300|consen 161 PICGTAS-ADHTARIWSLESGACLATYTGHT---GSVNSIK--FHNSGLLLLTASGD-ETAHIWKAAVNWEVPSNNAPSD 233 (481)
T ss_pred cceeecc-cccceeEEeeccccceeeecccc---cceeeEE--eccccceEEEccCC-cchHHHHHhhcCcCCCCCCCCC
Confidence 3578899 99999999999999999998765 5566666 99999999999999 99999962 1100
Q ss_pred -------------------------------eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc
Q 012996 73 -------------------------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH 121 (451)
Q Consensus 73 -------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 121 (451)
+.....|...|.+..|-..|..+++++.|.+..+||+++|+.+..+.+|
T Consensus 234 hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH 313 (481)
T KOG0300|consen 234 HSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH 313 (481)
T ss_pred CCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc
Confidence 0112236778889999999999999999999999999999999999999
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
....+.++-+|..+++++++.|.+.++||++. ....+..|.+|...|++..|..+ ..+++|+.|.+|
T Consensus 314 d~ELtHcstHptQrLVvTsSrDtTFRLWDFRe----------aI~sV~VFQGHtdtVTS~vF~~d---d~vVSgSDDrTv 380 (481)
T KOG0300|consen 314 DSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE----------AIQSVAVFQGHTDTVTSVVFNTD---DRVVSGSDDRTV 380 (481)
T ss_pred chhccccccCCcceEEEEeccCceeEeccchh----------hcceeeeecccccceeEEEEecC---CceeecCCCceE
Confidence 99999999999999999999999999999953 45567889999999999999887 589999999999
Q ss_pred EEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996 202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (451)
Q Consensus 202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 279 (451)
++||+++. .++.++...++++.++++..+..++.-..+..|++||++...... .+-..-++|...|+|++|..
T Consensus 381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeecccc
Confidence 99999975 567888899999999999999999999999999999998764321 12234568999999999986
Q ss_pred --CCEEEEEcCCCcEEEEeCCCC
Q 012996 280 --GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 280 --~~~l~s~~~dg~i~iwd~~~~ 300 (451)
-.-|++++.|..+.=|.+...
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CcccccccccccceeeeeEeccc
Confidence 456889999999999998754
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.3e-31 Score=205.92 Aligned_cols=250 Identities=18% Similarity=0.206 Sum_probs=208.5
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEee
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd 150 (451)
...|.+.|..+...-.|+.||+++.|+.|+|+.++.+ .++.++.+|.++|..++|.. .|.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3457788888888778999999999999999999765 45788999999999999975 899999999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c-eeeee--ecccceeEEEE
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R-LLRNI--VFPSVIDAIAL 226 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~-~~~~~--~~~~~i~~~~~ 226 (451)
-.+ ...........|...|++++|.|.+.+-.|++++.||.|.+.+++.. . ....+ .|+-.+++++|
T Consensus 87 e~~---------g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 87 EEN---------GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred cCC---------CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 865 34555677788999999999999998899999999999999998764 1 22222 28889999999
Q ss_pred CCC---C-----------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-----CCEEEEEc
Q 012996 227 DPA---E-----------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-----GDLLISGS 287 (451)
Q Consensus 227 ~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~s~~ 287 (451)
.|. | +.|++|+.|..|++|+..... +..-.++.+|...|+.++|.| ..+|++++
T Consensus 158 apa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhccccCCCceeeEEec
Confidence 995 4 569999999999999998863 344556999999999999999 35899999
Q ss_pred CCCcEEEEeCCCC-c--eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 288 EDGMVRVWDPITH-N--IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 288 ~dg~i~iwd~~~~-~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.||+|.||-.... + ....+......+..+.||+.|+.|+.++.|+.+.+|.-..
T Consensus 231 qDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 231 QDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 9999999976521 1 1122333467899999999999999999999999998553
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4e-29 Score=203.55 Aligned_cols=254 Identities=16% Similarity=0.231 Sum_probs=214.2
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFE 156 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~ 156 (451)
....|.++.|+++|.++++++.|..+++||..+++.+.++..+.-.|..++|......++.++. |.+|+..++
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl----- 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL----- 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence 3578999999999999999999999999999999999999888888999999887777777766 889999999
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (451)
.....++.|.||...|.+++.+|.+ ..+++++.|++|++||++..++...+... .-..++|+|.|-++|++
T Consensus 88 ------~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 88 ------HDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GRPIAAFDPEGLIFALA 158 (311)
T ss_pred ------ecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC-CCcceeECCCCcEEEEe
Confidence 4577899999999999999999998 89999999999999999988777666533 33457899999999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe--
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-- 313 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 313 (451)
...+.|++||++.-.... +.......+-....+.|.||| |++|+.+...+.+.+.|.-+|..+.++..+...-
T Consensus 159 ~~~~~IkLyD~Rs~dkgP----F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~ 234 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGP----FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL 234 (311)
T ss_pred cCCCeEEEEEecccCCCC----ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc
Confidence 988899999998753210 111111124467889999999 9999999999999999999999999998775532
Q ss_pred -eEEEEEecCceeeeccCCCCccccccCCCCCCCcccc
Q 012996 314 -NNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDK 350 (451)
Q Consensus 314 -~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~ 350 (451)
-..+|+||++++.+|+.||++.+|+.+.+.....++.
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 5678999999999999999999999987665444433
No 94
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.4e-29 Score=233.49 Aligned_cols=232 Identities=16% Similarity=0.181 Sum_probs=185.3
Q ss_pred eccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996 98 GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (451)
Q Consensus 98 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (451)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.||.|++||+.+...... ....++..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~---~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK---EIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc---ccccceEEeecCCC
Confidence 567889999998877788889999999999999996 78999999999999999965211000 00123446788999
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (451)
.|.+++|+|++. .++++++.|++|++||+++++....+.+...|.+++|+|+|.+|++++.|+.|++||++++
T Consensus 127 ~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg------ 199 (568)
T PTZ00420 127 KISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ------ 199 (568)
T ss_pred cEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC------
Confidence 999999999873 4568999999999999999988887778888999999999999999999999999999986
Q ss_pred CCceeeeeeccCCcceeEE-----EEec-CCEEEEEcCCC----cEEEEeCCC-CceEEEeecC--CCCeeEEEEEecCc
Q 012996 257 YGMHIIGSLSDHSKAVTCL-----AYST-GDLLISGSEDG----MVRVWDPIT-HNIVRMFRLA--KGPVNNILVVRRPL 323 (451)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~-----~~~~-~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~--~~~v~~l~~s~~~~ 323 (451)
..+..+.+|.+.+.+. .|++ +.+|++++.|+ .|+|||+++ ..++..+..+ .+.+......++|.
T Consensus 200 ---~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~ 276 (568)
T PTZ00420 200 ---EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL 276 (568)
T ss_pred ---cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC
Confidence 4456788888765433 3446 78888887764 799999985 5666665433 33344444455688
Q ss_pred eeeeccCCCCccccccCCC
Q 012996 324 YLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~~~~~ 342 (451)
++++|+.|+.|++|++...
T Consensus 277 l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 277 IYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred EEEEEECCCeEEEEEccCC
Confidence 9999999999999998654
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=230.24 Aligned_cols=283 Identities=14% Similarity=0.217 Sum_probs=238.5
Q ss_pred eccCcccCCCCCCccEEEEECCCCce-------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeee
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQV-------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW 118 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 118 (451)
|.+++|.+||.| |.|++|+.....- .....|.+.|..+....+++.|++++.|-+|++|+...+ -+..++
T Consensus 35 ~~~ryLfTgGRD-g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRD-GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCC-ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 567789999999 9999999864332 122347889999999999999999999999999999877 577888
Q ss_pred ccccCCeeEEEE-ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEee
Q 012996 119 HAHYRAVTCLVF-SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 119 ~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
..|.+.|.|+++ .++...+++||.|+.|.+||+.++....... ........+. ++..+|++++..+.+ ..+++|+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~siYSLA~N~t~--t~ivsGg 190 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDSIYSLAMNQTG--TIIVSGG 190 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccceeeeecCCcc--eEEEecC
Confidence 999999999999 7788899999999999999998764311111 1122233333 899999999999888 8999999
Q ss_pred CCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996 197 EDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 197 ~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 275 (451)
..+.+++||.++++.+..+. |...|.++..+++|..+++++.||+|++||+..+ +++.++..|...|+++
T Consensus 191 tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 191 TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---------RCLATYIVHKEGVWAL 261 (735)
T ss_pred cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---------ceeeeEEeccCceEEE
Confidence 99999999999998887777 8899999999999999999999999999999987 6788899999999999
Q ss_pred EEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 276 AYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 276 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
..+| -..+.+|+.||.|..=|+++......+.....||..+..+.+.+-+-+++.|+.|+-|......
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999 8999999999999999999865544555557789998888766666888899999999876543
No 96
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=202.63 Aligned_cols=267 Identities=18% Similarity=0.266 Sum_probs=212.1
Q ss_pred EEEeecCCCCCCeEEEECccCc------e---eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce
Q 012996 3 LLIASSSVADTGIGCWDLESGA------E---QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV 73 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~ 73 (451)
.-|++|+ ....|.-+++.-.. + +..+-.+..|...+++++ .++.++|+|+.| .+|+|||+.+...
T Consensus 2 m~iIvGt-YE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavA----Vs~~~~aSGssD-etI~IYDm~k~~q 75 (362)
T KOG0294|consen 2 MEIIVGT-YEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALA----VSGPYVASGSSD-ETIHIYDMRKRKQ 75 (362)
T ss_pred eeEEEee-eeeEEEEEEeccCccccccccceeeeccccccccccceeEEE----ecceeEeccCCC-CcEEEEeccchhh
Confidence 3567777 67777777654221 1 111234556778888877 678999999999 9999999986554
Q ss_pred e-eeecCCCCeeEEEECCCCc--EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 74 E-VKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 74 ~-~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
. ....|.+.|+++.|.++-. .|++|+.||.|.+|+..+..++.++++|.+.|+.++.+|.+++-++.+.|+.++.||
T Consensus 76 lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 76 LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 3 4556899999999998765 899999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+-++ ....+..+. + .-+.+.|++.| .+++.+..+ .|-+|.+.+......+..+..+.++.|. ++
T Consensus 156 LV~G---------r~a~v~~L~-~--~at~v~w~~~G--d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~ 219 (362)
T KOG0294|consen 156 LVRG---------RVAFVLNLK-N--KATLVSWSPQG--DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFL-DG 219 (362)
T ss_pred hhcC---------ccceeeccC-C--cceeeEEcCCC--CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeec-CC
Confidence 9552 222333332 1 12337898887 677777665 4999999988888777777667777664 67
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe--c-CCEEEEEcCCCcEEEEeCCCC
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS--T-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
..|++|+.|+.|.+||.+.. .+...+.+|...|-++.+- | +.+|+++|+||.|+|||++..
T Consensus 220 ~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 220 SELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceEEEecCCceEEEeccCCC---------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 78999999999999999875 5577889999999999843 3 789999999999999998765
No 97
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.3e-29 Score=232.73 Aligned_cols=250 Identities=16% Similarity=0.209 Sum_probs=190.7
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCC----------Ccce---eeeccccCCeeEEEEcc-CCcEEEEeeCCCcE
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----------GRLL---KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV 146 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~---~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i 146 (451)
..|.....++++..+++++.+.....|+... |+.. ..+.+|.+.|.+++|+| ++++|++|+.||+|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 3455555566655555555555555555432 2221 24678999999999999 88999999999999
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (451)
++||+.+.... .....++..+.+|...|.+++|+|.+. ++|++++.|++|++||+.+++.+..+. |...|.+++
T Consensus 101 kIWdi~~~~~~----~~~~~~l~~L~gH~~~V~~l~f~P~~~-~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 101 MGWGIPEEGLT----QNISDPIVHLQGHTKKVGIVSFHPSAM-NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred EEEecCCCccc----cccCcceEEecCCCCcEEEEEeCcCCC-CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999652110 011234667889999999999999753 689999999999999999998888876 788999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc-eeEEEEec-CCEEEEEc----CCCcEEEEeCCC
Q 012996 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA-VTCLAYST-GDLLISGS----EDGMVRVWDPIT 299 (451)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~l~s~~----~dg~i~iwd~~~ 299 (451)
|+|++.+|++++.|+.|++||++++ ..+..+.+|.+. +..+.|.+ +..+++++ .|+.|++||+++
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg---------~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDG---------TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCC---------cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 9999999999999999999999886 446677788765 44677888 66776654 479999999987
Q ss_pred Cc-eEEEeecCC-CCeeEEEEEecCceeeecc-CCCCccccccCCCCC
Q 012996 300 HN-IVRMFRLAK-GPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGSQL 344 (451)
Q Consensus 300 ~~-~~~~~~~~~-~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~~~ 344 (451)
.. ++.....+. ..+....|++++.+|++++ .|+.|++|++....+
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 54 444444333 4566678899999999887 599999999986654
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.7e-29 Score=225.34 Aligned_cols=280 Identities=22% Similarity=0.310 Sum_probs=231.5
Q ss_pred ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee---eecCCCCeeE-EEECC-CCcEEEEe
Q 012996 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKP-IAANS-HGTYIAGG 98 (451)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~-~~~~~-~~~~l~~~ 98 (451)
+..+.+.+|...+..+. . .++-.+++++.| |++++|+-..++... ...|.+-|.+ +++-+ ++-.+++|
T Consensus 5 ~ls~~l~gH~~DVr~v~-----~-~~~~~i~s~sRd-~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVA-----V-TDGVCIISGSRD-GTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG 77 (745)
T ss_pred eeEEEeccCccchheeE-----e-cCCeEEeecCCC-CceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence 44556666665544433 2 234567788887 999999976655443 2235555555 77765 45569999
Q ss_pred ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
+.|+.|.+|......++.++++|...|.|+....++. +++||.|.++++|.... +...+.+|+..|
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~-------------l~~~l~gH~asV 143 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE-------------LVYSLQGHTASV 143 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh-------------hhcccCCcchhe
Confidence 9999999999999999999999999999999887777 99999999999998843 455689999999
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
++++.-|. ..++||+.|.+|++|.- ++.++++. |...|+.+++-|++. |++++.||.|++|++..
T Consensus 144 WAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~g-------- 209 (745)
T KOG0301|consen 144 WAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDG-------- 209 (745)
T ss_pred eeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccC--------
Confidence 99998887 48999999999999984 77788887 899999999987754 67889999999999955
Q ss_pred CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
..+.++.+|+..|+++.... +..++++++|++++||+.. ++.+.+..+...|+++.+-++| -+++|+.||.|+|
T Consensus 210 --e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~VrV 284 (745)
T KOG0301|consen 210 --EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVRV 284 (745)
T ss_pred --ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccCceEEE
Confidence 55888999999999999766 9999999999999999976 8899999888899999999988 4788889999999
Q ss_pred cccCCCC
Q 012996 337 SRRHGSQ 343 (451)
Q Consensus 337 w~~~~~~ 343 (451)
|.....+
T Consensus 285 fT~~k~R 291 (745)
T KOG0301|consen 285 FTVDKDR 291 (745)
T ss_pred EEecccc
Confidence 9987443
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=203.48 Aligned_cols=248 Identities=20% Similarity=0.245 Sum_probs=203.9
Q ss_pred eeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC-Ccce-eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 74 EVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-GRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 74 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
.+...+.+.|.+|+||| ...++++|+.||+|++|+++. |... +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 34455678999999999 666777999999999999987 3333 34567999999999999999999999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+.+ . .+..+..|.++|..+.|-+......|+||+.|++|+.||.+...++.++..+..++++.. ..
T Consensus 101 L~S-----------~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~ 166 (347)
T KOG0647|consen 101 LAS-----------G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LY 166 (347)
T ss_pred ccC-----------C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cC
Confidence 955 2 355677899999999998877556899999999999999999999999999999888765 45
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC--ceEEEee
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRMFR 307 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~~~ 307 (451)
.+++++..+..|.+|+++++.... -.........++|++..+ .+..+.|+-+|.+.|..++.+ +.-.+|+
T Consensus 167 pm~vVata~r~i~vynL~n~~te~-------k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFk 239 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEF-------KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFK 239 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchh-------hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEE
Confidence 688999999999999998764211 111112345688998888 677799999999999998876 4445677
Q ss_pred cCCC---------CeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 308 LAKG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 308 ~~~~---------~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.|.. +|++|+|+|.-..|+|++.||+..+||-...
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 7752 5889999999999999999999999997643
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1e-30 Score=219.44 Aligned_cols=247 Identities=22% Similarity=0.299 Sum_probs=216.9
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
..|.+.|..+.|-++...|++|+.|..|++|++..++ .+.++.+..++|+++.|.++++++++++.|+.+++|++
T Consensus 172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv--- 248 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV--- 248 (459)
T ss_pred hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec---
Confidence 3478899999999998999999999999999987766 67788888999999999999999999999999999999
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (451)
......+++.+|+..|+++.|.... ..+++|+.|.+|++||+....+..++...+.+..++.+ ...++
T Consensus 249 --------d~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~ 316 (459)
T KOG0288|consen 249 --------DSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVI 316 (459)
T ss_pred --------cchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEec--ceeee
Confidence 4566788999999999999998876 45999999999999999999998888877888888876 66789
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC----
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA---- 309 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---- 309 (451)
+|..|+.|++||.+... +......+ +.|+++..++ +..|.+++.|.++.+.|+++.+....+...
T Consensus 317 SgH~DkkvRfwD~Rs~~---------~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSAD---------KTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred ecccccceEEEeccCCc---------eeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 99999999999999874 34455554 4999999999 999999999999999999999888877642
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
....+.+.|||++.|+++||.||.++||++.++++...+
T Consensus 387 asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe
Confidence 235899999999999999999999999999988765443
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=5.3e-28 Score=208.23 Aligned_cols=312 Identities=15% Similarity=0.282 Sum_probs=244.7
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-----cC
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LP 79 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-----~~ 79 (451)
++.-.+.+..+.|||...+......+. ....+.... |+|.+..+++.... |.+.+|+..++....+. ..
T Consensus 172 ~~vD~s~~h~lSVWdWqk~~~~~~vk~---sne~v~~a~--FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~e 245 (626)
T KOG2106|consen 172 CAVDDSNPHMLSVWDWQKKAKLGPVKT---SNEVVFLAT--FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKRE 245 (626)
T ss_pred EEecCCCccccchhhchhhhccCccee---ccceEEEEE--eccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccccc
Confidence 333333678899999998877755553 235566666 99988887777777 99999999877655332 23
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|. |++|+.|..|..||- .......
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~-~y~k~r~ 322 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDD-NYRKLRE 322 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEeccc-ccccccc
Confidence 47899999999987 77899999999999987777777779999999999999987 555999999999992 2111100
Q ss_pred hh--c----------------------------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC
Q 012996 160 SQ--R----------------------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG 209 (451)
Q Consensus 160 ~~--~----------------------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 209 (451)
.. . -.........+|......++.+|+. +.+++++.|+.+++|+ ..
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcceEEEcc--CC
Confidence 00 0 0011122345788888899999988 8999999999999999 67
Q ss_pred ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC
Q 012996 210 RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE 288 (451)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~ 288 (451)
++..+.....++.|+.|+|.| .+++|+..|...+.|..+.. .+. +.....+++++.|+| |.+||.|+.
T Consensus 399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~---------lv~-~~~d~~~ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD---------LVT-IHTDNEQLSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce---------eEE-EEecCCceEEEEEcCCCCEEEEecC
Confidence 777777788999999999999 99999999999999998852 233 333388999999999 999999999
Q ss_pred CCcEEEEeCCC-CceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 289 DGMVRVWDPIT-HNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 289 dg~i~iwd~~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|+.|+||-+.. +....... .+..+|+.|.||+|+++|.+-|.|-.+..|...
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred CCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence 99999998864 34333333 344799999999999999999999999999543
No 102
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.3e-28 Score=199.33 Aligned_cols=259 Identities=17% Similarity=0.221 Sum_probs=206.6
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEE
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI 148 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v 148 (451)
+...|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+-...+.|.+.|..+.|.+ -|+.+++++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 44557788999999999999999999999999997544 45566789999999999965 6899999999999999
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee------eeee------
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL------RNIV------ 216 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~------ 216 (451)
|.=.... ............++....+.|+++.|.|...|-.+++++.||.++||+....-.+ ..+.
T Consensus 88 WEE~~~~--~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 88 WEEQEKS--EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeecccc--cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9753111 1111123445667778889999999999887789999999999999987654322 2222
Q ss_pred --cccceeEEEECC---CCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--C---C
Q 012996 217 --FPSVIDAIALDP---AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G---D 281 (451)
Q Consensus 217 --~~~~i~~~~~~~---~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~---~ 281 (451)
+..+..|+.|+| ...+|++|+.+ +.++||....... .+..+.++.+|..+|+.++|.| | .
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceeeeeccccCCcee
Confidence 345678999998 45788888876 4788887765432 1356778889999999999999 4 3
Q ss_pred EEEEEcCCCcEEEEeCCCC--------------------ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 282 LLISGSEDGMVRVWDPITH--------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 282 ~l~s~~~dg~i~iwd~~~~--------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+||+++.|| |+||.+... +.+..+..|.++|+.+.|+-.|..|++.|.||.+++|+..-
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 899999999 999998731 23556779999999999999999999999999999999653
No 103
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.7e-29 Score=229.64 Aligned_cols=240 Identities=19% Similarity=0.315 Sum_probs=194.4
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----------------------------ce------------
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----------------------------QV------------ 73 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----------------------------~~------------ 73 (451)
.|.++|.++. |++||+|||+||.| |.|+||.+... ..
T Consensus 265 ah~gaIw~mK--FS~DGKyLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMK--FSHDGKYLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEE--eCCCCceeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 6778999999 99999999999999 99999986540 00
Q ss_pred ---------------------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc
Q 012996 74 ---------------------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE 132 (451)
Q Consensus 74 ---------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 132 (451)
.....|.+.|..|.||.+ ++|++++.|.+|++|++...++++.|. |...|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 001136778999999975 578899999999999999999999996 999999999999
Q ss_pred -CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce
Q 012996 133 -DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL 211 (451)
Q Consensus 133 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 211 (451)
|.+||++|+-||.|+||++.. .. +.....-..-|+++++.|+| +..+.|+.+|.+++|+....+.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d-----------~~-Vv~W~Dl~~lITAvcy~PdG--k~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISD-----------KK-VVDWNDLRDLITAVCYSPDG--KGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred cCCCcEeecccccceEEeecCc-----------Ce-eEeehhhhhhheeEEeccCC--ceEEEEEeccEEEEEEccCCeE
Confidence 899999999999999999933 22 33344455889999999998 8999999999999999988776
Q ss_pred eeeee---c------ccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEec
Q 012996 212 LRNIV---F------PSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST 279 (451)
Q Consensus 212 ~~~~~---~------~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~ 279 (451)
...+. + ...|+.+.|.| +...+++.+.|..|+|||.+.. .++..++++.. .-....|+.
T Consensus 486 ~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~ 556 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS 556 (712)
T ss_pred EEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc
Confidence 65543 1 23699999998 4456888899999999999775 33455555432 234456777
Q ss_pred -CCEEEEEcCCCcEEEEeCCCCc
Q 012996 280 -GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 280 -~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
|.+|++++.|..|++|+.....
T Consensus 557 Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 557 DGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999985443
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=205.88 Aligned_cols=259 Identities=22% Similarity=0.360 Sum_probs=225.7
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC-----
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL----- 151 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~----- 151 (451)
..|.+.|..++.......+.+++.|.+.+||.++++.++.++.+|.+.|++++|++.+.++++++.|++..||..
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 458899999999888889999999999999999999999999999999999999999999999999999999973
Q ss_pred -cch--------hhhh-hh------------h--cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 152 -LTV--------FEEC-ES------------Q--RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 152 -~~~--------~~~~-~~------------~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
... .++. .. . ..-..++..+.+|.+.|.+..|...+ ..+++++.|.+..+||+.
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg--~Q~vTaSWDRTAnlwDVE 302 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGG--QQMVTASWDRTANLWDVE 302 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCc--ceeeeeeccccceeeeec
Confidence 110 0000 00 0 01123566788999999999999888 899999999999999999
Q ss_pred CCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEE
Q 012996 208 KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISG 286 (451)
Q Consensus 208 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 286 (451)
+++++..+. |....+.++-+|..+++++.+.|-+.++||++... ..+..+++|...|+++.|..+..+++|
T Consensus 303 tge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI--------~sV~VFQGHtdtVTS~vF~~dd~vVSg 374 (481)
T KOG0300|consen 303 TGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI--------QSVAVFQGHTDTVTSVVFNTDDRVVSG 374 (481)
T ss_pred cCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhc--------ceeeeecccccceeEEEEecCCceeec
Confidence 999999887 88899999999999999999999999999999653 668899999999999999888899999
Q ss_pred cCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 287 SEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 287 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
+.|.+|++||+++. .++.+++. .++++.++.+..++.+|.--.+..|++||+.|..+..
T Consensus 375 SDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred CCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 99999999999875 57888876 6899999999988899988888889999999987644
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.9e-29 Score=211.82 Aligned_cols=247 Identities=21% Similarity=0.359 Sum_probs=215.6
Q ss_pred eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce----ee-------------e-ccccCCeeEEEEccCC
Q 012996 73 VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL----KK-------------W-HAHYRAVTCLVFSEDG 134 (451)
Q Consensus 73 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~ 134 (451)
......|.-+|.+++++|++.+.++++.+|+|.-|++.++... .. - +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3444568889999999999999999999999999999887532 01 1 2788899999999999
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 214 (451)
++|++|+.|..|.||+..+ ...++.+.+|.+.|.+++|-... ..+++++.|+.|++|++.....+.+
T Consensus 215 kylatgg~d~~v~Iw~~~t-----------~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-----------LEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred cEEEecCCCceEEEecCcc-----------cchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHH
Confidence 9999999999999999955 55677799999999999998877 7899999999999999998877776
Q ss_pred ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEE
Q 012996 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR 293 (451)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~ 293 (451)
+. |+..|.++....-++.+-+|+.|+++++|++.... ...+.+|.+.+-|++|-....|++|+.||.|.
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------qlifrg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEeccccc----------eeeeeCCCCCeeeEEEecccceeeccCCceEE
Confidence 65 89999999999999999999999999999996543 33577888999999998888999999999999
Q ss_pred EEeCCCCceEEEeec-C-----------CCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 294 VWDPITHNIVRMFRL-A-----------KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 294 iwd~~~~~~~~~~~~-~-----------~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
+|++...+++.+.+. | ...|++|+..|...++|+||.+|.+++|.+..+
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999999887652 1 127899999999999999999999999999876
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.2e-28 Score=198.30 Aligned_cols=252 Identities=19% Similarity=0.201 Sum_probs=207.0
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
+...+.+.|.++.|+|.++.|+++++||.+++||+....+...++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 444567899999999999999999999999999998886666664 899999999986 557999999999999999652
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (451)
....+..|..+|.++..++.. ..+++|++|++|++||.+.......+..+..|.++.. .++.|+
T Consensus 86 ------------~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~Lv 149 (323)
T KOG1036|consen 86 ------------NEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLV 149 (323)
T ss_pred ------------cceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEE
Confidence 233456799999999999776 7899999999999999998777777776777877765 678999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----ceEEEeecC
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----NIVRMFRLA 309 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~ 309 (451)
+|+.+..+.+||+++..... ...-..-...+.++++-| +.-+++++-||.|.+=.++.. ..-..|+.|
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~-------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH 222 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPF-------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH 222 (323)
T ss_pred EeecCceEEEEEcccccchh-------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee
Confidence 99999999999999865211 112223456889999999 777888899999888666655 444567766
Q ss_pred CC---------CeeEEEEEecCceeeeccCCCCccccccCCCCCCCccccc
Q 012996 310 KG---------PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKY 351 (451)
Q Consensus 310 ~~---------~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~ 351 (451)
.. ||++|+|+|-...||||+.||.|.+||....+....+.++
T Consensus 223 r~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 223 RLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred ecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 43 8999999999999999999999999999988777766666
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=225.03 Aligned_cols=232 Identities=19% Similarity=0.327 Sum_probs=205.0
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCc------ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
|.++||++|+.||.|++|++.... .+..+..|...|+++....+++.|++++.|-+|++|+... .
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~---------~ 105 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHK---------D 105 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeeccc---------C
Confidence 467889999999999999985432 3677889999999999999999999999999999999955 2
Q ss_pred cccceecccCCcCceeEEEE-eecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee----------cccceeEEEECCCC
Q 012996 164 SHLYLHSFTGHTLRITDIVI-GYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV----------FPSVIDAIALDPAE 230 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~-~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~----------~~~~i~~~~~~~~~ 230 (451)
..-+..++..|...|.|+++ .++. ..+++|+.|+.|.+||+.++ +.+..+. +..+|++++..+.+
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~--~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~ 183 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNN--ELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG 183 (735)
T ss_pred cchhHhhhhcccchheeeeecccCc--eeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc
Confidence 23567888999999999998 5554 89999999999999999987 2333222 34679999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
..++.|+.++.+++||.++. ..+..+++|+..|.++..++ |..++++|+||+|++||+...+++.++..|
T Consensus 184 t~ivsGgtek~lr~wDprt~---------~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTC---------KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred eEEEecCcccceEEeccccc---------cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 99999999999999999997 44667889999999999999 999999999999999999999999999999
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
...|+++..+|+-.++.+|+.||.|..=++..
T Consensus 255 ~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 255 KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred cCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999999999999998877765
No 108
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=5.5e-29 Score=201.76 Aligned_cols=270 Identities=20% Similarity=0.318 Sum_probs=215.3
Q ss_pred EEEeecCCCCCCeEEEECcc------------Ccee---eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEE
Q 012996 3 LLIASSSVADTGIGCWDLES------------GAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWS 67 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~------------~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~ 67 (451)
.++|||+ .|.+|+|.|++. |... ..++....|...|.++. |+|....|++++.| ++|+++|
T Consensus 125 ~lvATGs-aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~--FHPre~ILiS~srD-~tvKlFD 200 (430)
T KOG0640|consen 125 SLVATGS-ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD--FHPRETILISGSRD-NTVKLFD 200 (430)
T ss_pred cEEEccC-CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee--ecchhheEEeccCC-CeEEEEe
Confidence 4789999 999999999871 1110 12334446778899999 99999999999999 9999999
Q ss_pred CCCCcee--ee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEee
Q 012996 68 WSKPQVE--VK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGS 141 (451)
Q Consensus 68 ~~~~~~~--~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~ 141 (451)
+.+.... .+ .....+|.++.|+|.|.+|++|.....+++||+++.++.... .+|.+.|+++.+++.+++.++|+
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS 280 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS 280 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEec
Confidence 9865533 11 224679999999999999999999999999999998876554 56999999999999999999999
Q ss_pred CCCcEEEeeCcchhhhhhhhcccccceeccc-CCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc
Q 012996 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219 (451)
Q Consensus 142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 219 (451)
.||.|++||- .+..++.++. .|. ..|.+..|..++ +++++.+.|..+++|.+.+++++..+...+
T Consensus 281 kDG~IklwDG-----------VS~rCv~t~~~AH~gsevcSa~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg 347 (430)
T KOG0640|consen 281 KDGAIKLWDG-----------VSNRCVRTIGNAHGGSEVCSAVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAG 347 (430)
T ss_pred cCCcEEeecc-----------ccHHHHHHHHhhcCCceeeeEEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCC
Confidence 9999999997 3455555554 343 468888999988 999999999999999999999998876321
Q ss_pred ------ceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996 220 ------VIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM 291 (451)
Q Consensus 220 ------~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~ 291 (451)
.-+...|+....+++.-. ..+.+.-||.++.. +....-.+|.+.+..+.-|| +..+++|+.|-.
T Consensus 348 ~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtad--------r~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 348 TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTAD--------RVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred cccchhhhhhhhhcCccceEEccccccCceeeccccchh--------hhhhcccCCCCCceEEEeCCCCCceeeecccce
Confidence 123344555666655443 45678999999875 22333458999999999999 999999999999
Q ss_pred EEEEeC
Q 012996 292 VRVWDP 297 (451)
Q Consensus 292 i~iwd~ 297 (451)
+++|--
T Consensus 420 aRFWyr 425 (430)
T KOG0640|consen 420 ARFWYR 425 (430)
T ss_pred eeeeee
Confidence 999964
No 109
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.3e-29 Score=213.23 Aligned_cols=242 Identities=19% Similarity=0.298 Sum_probs=204.0
Q ss_pred CCCCeeEEEECCCCcE-EEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 79 PAEPIKPIAANSHGTY-IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
....|.+++|+|...+ +|+.+ .-.+.||+..+.....++......|.++.|-.||++|++|...|.|+|||+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k----- 98 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK----- 98 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-----
Confidence 3578999999996654 44433 4579999998888888887788899999999999999999999999999973
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC-CCEEEE
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA-EHVFYA 235 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~-~~~l~~ 235 (451)
....+..+..|+.++..+.|+|.+. ..+++|+.|+.+++||+.+......+. |...|.|.+|+|. +..+++
T Consensus 99 ------~r~iLR~~~ah~apv~~~~f~~~d~-t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 99 ------SRVILRQLYAHQAPVHVTKFSPQDN-TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred ------cHHHHHHHhhccCceeEEEecccCC-eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 3556788999999999999999875 788999999999999999888644554 8899999999995 558999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-ceEEEeecCCCCe
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-NIVRMFRLAKGPV 313 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v 313 (451)
|+.||.|++||++... ..+.++ .|..+|..+.+-| |..+++++. ..|+|||+.+| +.+..+..|...|
T Consensus 172 GsYDg~vrl~DtR~~~--------~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLT--------SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred cCCCceEEEEEeccCC--------ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceE
Confidence 9999999999999863 233344 5899999999999 888888874 46999999955 5555565699999
Q ss_pred eEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+|+.+..++..|+++|-|+.+++|++...+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYK 271 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceE
Confidence 999999999999999999999999965443
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.97 E-value=6.5e-27 Score=209.23 Aligned_cols=286 Identities=13% Similarity=0.109 Sum_probs=211.2
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~ 81 (451)
|.++++++ .|+.|.+||+.+++.+..+..+.. +..+. |+|+++.+++++.+++.|++||..+++.........
T Consensus 1 ~~~~~s~~-~d~~v~~~d~~t~~~~~~~~~~~~----~~~l~--~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 1 EKAYVSNE-KDNTISVIDTATLEVTRTFPVGQR----PRGIT--LSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred CcEEEEec-CCCEEEEEECCCCceEEEEECCCC----CCceE--ECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 45788998 999999999999998888865432 34456 999999875544444999999998877654433334
Q ss_pred CeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC-cEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-CVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~ 159 (451)
.+..++|+|+++.++++ +.++.|++||+.+++.+..+.. ...+.+++|+|++.++++++.++ .+.+||..+.
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~----- 147 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY----- 147 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC-----
Confidence 56789999999977654 5689999999998887777653 34468899999999999888775 4667788542
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCceeeeeecc--------cceeEEEECCCC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFP--------SVIDAIALDPAE 230 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~i~~~~~~~~~ 230 (451)
....... ....+.++.|++++ ..+ +++..++.|++||+.+++.+..+... .....++|+|++
T Consensus 148 ------~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 218 (300)
T TIGR03866 148 ------EIVDNVL-VDQRPRFAEFTADG--KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG 218 (300)
T ss_pred ------eEEEEEE-cCCCccEEEECCCC--CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence 1122111 12244678898887 566 45557999999999998877665421 123468899999
Q ss_pred CEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-cCCCcEEEEeCCCCceEEEee
Q 012996 231 HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 231 ~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~~~~~~~ 307 (451)
++++++ +.++.+.+||..+.. ..... .+...+.+++|+| +.+|+++ +.+|.|.+||+.+++++.+++
T Consensus 219 ~~~~~~~~~~~~i~v~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 219 KTAFVALGPANRVAVVDAKTYE---------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCc---------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 986654 456789999997653 22222 2445789999999 8888876 568999999999999999998
Q ss_pred cCCCCeeEEEEEe
Q 012996 308 LAKGPVNNILVVR 320 (451)
Q Consensus 308 ~~~~~v~~l~~s~ 320 (451)
.. ...+.++++|
T Consensus 289 ~~-~~~~~~~~~~ 300 (300)
T TIGR03866 289 VG-RLPWGVVVRP 300 (300)
T ss_pred cc-cccceeEeCC
Confidence 75 4458888875
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=209.44 Aligned_cols=268 Identities=21% Similarity=0.289 Sum_probs=212.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.+|+|+ .||.|+|||+.+..+..+++.|.+.+.++. +.. ..++++|.| .+|+.|.++.+ ..........+
T Consensus 81 ~~aSGs-~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~-----v~~--~~~~tvgdD-KtvK~wk~~~~-p~~tilg~s~~ 150 (433)
T KOG0268|consen 81 TVASGS-CDGEVKIWNLSQRECIRTFKAHEGLVRGIC-----VTQ--TSFFTVGDD-KTVKQWKIDGP-PLHTILGKSVY 150 (433)
T ss_pred hhhccc-cCceEEEEehhhhhhhheeecccCceeeEE-----ecc--cceEEecCC-cceeeeeccCC-cceeeeccccc
Confidence 478999 999999999999999999999887777665 333 667777777 99999998875 22333446678
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
..+.-+..++.++++|. .|.|||.....++..+.-....|.++.|+| ....|++|+.|+.|.+||+++.
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-------- 220 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-------- 220 (433)
T ss_pred cccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC--------
Confidence 88888888888999876 499999999999999988888999999999 4567788889999999999762
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
.+++... -...-+.|+|+|.. ..+++++.|..++.||++.... +.... |.+.|.++.|+|.|+-|++|+.|.
T Consensus 221 ---~Pl~KVi-~~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 221 ---SPLKKVI-LTMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred ---Cccceee-eeccccceecCccc--cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 2222221 23344678999965 7889999999999999987543 33333 888999999999999999999999
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM 305 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~ 305 (451)
+|+||..+.+.. ..+ ....-...|.|+.||. ..++++||.|++|++|.....+.+..
T Consensus 295 sIRIf~~~~~~S-------Rdi-YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 295 SIRIFPVNHGHS-------RDI-YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred eEEEeecCCCcc-------hhh-hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCC
Confidence 999999987642 111 1111235799999999 99999999999999999776555443
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5e-28 Score=206.22 Aligned_cols=286 Identities=16% Similarity=0.246 Sum_probs=234.5
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 110 (451)
...+|+++. |+|..+.++++|.| |++++|.++... +........+|.+..|.|+|. .+++++....++.||+.
T Consensus 212 s~~~I~sv~--FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 212 SHGGITSVQ--FHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred CcCCceEEE--ecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecc
Confidence 447789999 99999999999999 999999987543 223334577999999999999 88999999999999998
Q ss_pred CCccee--eecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 111 SGRLLK--KWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 111 ~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
+.+... .+.++. ..+.....+|++++|+..|..|.|.+....+ ...+.++. -.+.|.+++|+.++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-----------~eli~s~K-ieG~v~~~~fsSds 356 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-----------KELITSFK-IEGVVSDFTFSSDS 356 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-----------hhhhheee-eccEEeeEEEecCC
Confidence 886543 334443 4567788999999999999999999998744 33444444 46789999999887
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceeeeeecccce--eEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
..|++++.+|.|.+||++...+++.+...+.+ +++|.++++.+||+|+..|.|.|||..+..... .++++..+
T Consensus 357 --k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~ 431 (514)
T KOG2055|consen 357 --KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTV 431 (514)
T ss_pred --cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhh
Confidence 88888899999999999999999999866655 567778999999999999999999976643221 23667777
Q ss_pred ccCCcceeEEEEec-CCEEEEEcC--CCcEEEEeCCCCceEEEeecC---CCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 266 SDHSKAVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLA---KGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 266 ~~~~~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
..-...|++|.|++ ..+|+.+|. +..+++-.+.+......+... -+.|+|++|||.+.+||.|..+|.+.+|++
T Consensus 432 dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 77889999999999 888888775 678999999888777766643 346999999999999999999999999986
Q ss_pred C
Q 012996 340 H 340 (451)
Q Consensus 340 ~ 340 (451)
+
T Consensus 512 ~ 512 (514)
T KOG2055|consen 512 H 512 (514)
T ss_pred c
Confidence 5
No 113
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=5e-27 Score=213.91 Aligned_cols=314 Identities=20% Similarity=0.262 Sum_probs=230.1
Q ss_pred EEeecCCCCCCeEEEECccCcee----eeeecCCCCCCceEEecceEeecc--CcccCCCCCCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQ----LRYKSCASPPHGLACVGQRFLASS--QLREQPSASSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~d~g~i~vw~~~~~~~~~~~ 77 (451)
.++++. .++.+.||+..+++.. ..+... ....|+++ ++|.- +.++.|+.. |.+.+|++++++.....
T Consensus 126 ~lia~d-~~~~l~vw~~s~~~~e~~l~~~~~~~--~~~~Ital---~HP~TYLNKIvvGs~~-G~lql~Nvrt~K~v~~f 198 (910)
T KOG1539|consen 126 HLIAVD-ISNILFVWKTSSIQEELYLQSTFLKV--EGDFITAL---LHPSTYLNKIVVGSSQ-GRLQLWNVRTGKVVYTF 198 (910)
T ss_pred eEEEEE-ccCcEEEEEeccccccccccceeeec--cCCceeeE---ecchhheeeEEEeecC-CcEEEEEeccCcEEEEe
Confidence 355666 7999999998874211 111111 11225544 44542 446677777 99999999999987664
Q ss_pred c-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchh
Q 012996 78 L-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 78 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~ 155 (451)
. +...|+++.-+|--..+|.|..+|.|.+++++.++.+.+++...+.|+.++|..||.. +++|+..|.+.+||++..
T Consensus 199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k- 277 (910)
T KOG1539|consen 199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK- 277 (910)
T ss_pred cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCC-
Confidence 4 5689999999999999999999999999999999999999866799999999998865 556667799999999542
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc----eeee-----------------
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR----LLRN----------------- 214 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~----------------- 214 (451)
.........|.+.|....|.+.. ..+++++.|+.+++|=..++. .++.
T Consensus 278 ---------kl~~v~~nah~~sv~~~~fl~~e--pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 278 ---------KLINVTRNAHYGSVTGATFLPGE--PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ---------eeeeeeeccccCCcccceecCCC--ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 11111222455555555555544 455555555554444222100 0000
Q ss_pred --------------------------------------------------------------------------------
Q 012996 215 -------------------------------------------------------------------------------- 214 (451)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (451)
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence
Q ss_pred ------------eec------ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee---ccCCccee
Q 012996 215 ------------IVF------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVT 273 (451)
Q Consensus 215 ------------~~~------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~ 273 (451)
+.+ ...+.+++.++.|++.+.|+..|.|-+|++.++.. ...+ ..|..+|+
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------r~sf~~~~ah~~~V~ 497 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------RKSFGDSPAHKGEVT 497 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------ecccccCccccCcee
Confidence 000 01578899999999999999999999999998742 2233 57999999
Q ss_pred EEEEec-CCEEEEEcCCCcEEEEeCCCCceE-----------------------------------------EEeecCCC
Q 012996 274 CLAYST-GDLLISGSEDGMVRVWDPITHNIV-----------------------------------------RMFRLAKG 311 (451)
Q Consensus 274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~-----------------------------------------~~~~~~~~ 311 (451)
+++... ++.+++++.+|.+++||.....++ +.|.+|.+
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n 577 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN 577 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc
Confidence 999999 999999999999999998765532 23348999
Q ss_pred CeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996 312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
.|++++|||||++|++++.|++|++||+.++.+.
T Consensus 578 ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred ceeeeEeCCCCcEEEEeecCCcEEEEeccCccee
Confidence 9999999999999999999999999999887653
No 114
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.4e-28 Score=207.39 Aligned_cols=295 Identities=17% Similarity=0.204 Sum_probs=228.6
Q ss_pred CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--ceee-ee
Q 012996 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVEV-KS 77 (451)
Q Consensus 1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~~~~-~~ 77 (451)
||++.++.+ ...+++||.........+..+.. ..++..+. |.....+++.....|..+++|.-... .++. ..
T Consensus 2 qeNl~~aS~--gd~~kl~D~s~~~~~~~~~~~t~-~pg~~s~~--w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k 76 (673)
T KOG4378|consen 2 QENLHVAST--GDKTKLSDFSDLETKSEYVHQTA-EPGDFSFN--WQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK 76 (673)
T ss_pred Ccceeeecc--CCceEEeecccccCccccccCCC-CCcceeee--ccccceEEEeecCCceeEEEecccCCCCccceeec
Confidence 566655555 34799999987777766655554 44588777 87776543333333489999986544 2322 22
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
...+.-.|++......|+++|+..+.|+|||++...+.+.+++|...|+++.+...+.+|++++..|.|.|..+.+.
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~--- 153 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK--- 153 (673)
T ss_pred cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---
Confidence 33445566666666699999999999999999977778888999999999999999999999999999999999652
Q ss_pred hhhhcccccceecccCC-cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC-CCCEE
Q 012996 158 CESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP-AEHVF 233 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~-~~~~l 233 (451)
.....|... ...|.-+.+++... .+|.+++.+|.|.+||+....++..+. |..+...+||+| +..+|
T Consensus 154 --------~~tt~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~ 224 (673)
T KOG4378|consen 154 --------QKTTTFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL 224 (673)
T ss_pred --------ccccceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence 222233322 33456788888764 678889999999999998888887765 889999999999 56678
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG 311 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~ 311 (451)
++.+.|..|.+||.+.... ...+ ....+.+.++|++ |.+|+.|...|.|..||++. ..++..+..|..
T Consensus 225 vsVG~Dkki~~yD~~s~~s---------~~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~ 294 (673)
T KOG4378|consen 225 VSVGYDKKINIYDIRSQAS---------TDRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA 294 (673)
T ss_pred EEecccceEEEeecccccc---------ccee-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc
Confidence 8889999999999987532 2222 2457899999999 99999999999999999985 568999999999
Q ss_pred CeeEEEEEecC
Q 012996 312 PVNNILVVRRP 322 (451)
Q Consensus 312 ~v~~l~~s~~~ 322 (451)
.|++++|-|..
T Consensus 295 sVt~vafq~s~ 305 (673)
T KOG4378|consen 295 SVTRVAFQPSP 305 (673)
T ss_pred ceeEEEeeecc
Confidence 99999998864
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=210.50 Aligned_cols=269 Identities=17% Similarity=0.261 Sum_probs=207.0
Q ss_pred EEEeecCCCCCCeEEEECccC----ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----
Q 012996 3 LLIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE---- 74 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~---- 74 (451)
..|++|+ .|-+|++||+... ...+.+..+.+ +.|.++. |++.|..+++.+.. ...+|+|-+..+..
T Consensus 180 aR~~sGs-~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~--ys~Tg~~iLvvsg~-aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 180 ARFVSGS-LDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQ--YSVTGDQILVVSGS-AQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred ceeeecc-ccceEEEEecccccccchhhhccCcccc--cccceee--ecCCCCeEEEEecC-cceeEEccCCceeeeeec
Confidence 4689999 9999999998632 33344444433 4577777 99999888887776 89999997654432
Q ss_pred ---------eeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcc-eeee-----ccccCCeeEEEEccCCcEEE
Q 012996 75 ---------VKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSEDGSFLI 138 (451)
Q Consensus 75 ---------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~~~~~l~ 138 (451)
....|...++|.+|+|.. ..+++++.||+++|||+...+. +..+ .+..-+++.++|++|++.|+
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iA 333 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIA 333 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhh
Confidence 223477789999999954 5788999999999999976643 3333 23445789999999999999
Q ss_pred EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC--ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeee
Q 012996 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI 215 (451)
Q Consensus 139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~ 215 (451)
+|..||.|.+|+.... ........-..|.. .|+++.|+++| ++|++-+.|+++++||++..+ ++...
T Consensus 334 agc~DGSIQ~W~~~~~--------~v~p~~~vk~AH~~g~~Itsi~FS~dg--~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 334 AGCLDGSIQIWDKGSR--------TVRPVMKVKDAHLPGQDITSISFSYDG--NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred hcccCCceeeeecCCc--------ccccceEeeeccCCCCceeEEEecccc--chhhhccCCCceeeeeccccccchhhh
Confidence 9999999999998542 12223334456776 99999999999 899999999999999999754 33333
Q ss_pred e---cccceeEEEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996 216 V---FPSVIDAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 216 ~---~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s 285 (451)
. ...+-+.++|+|+.+++++|+. .|.+++||..+. ..+..+.-....|..+.|+| -+.|++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------DTVYKIDISTASVVRCLWHPKLNQIFA 474 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------eeEEEecCCCceEEEEeecchhhheee
Confidence 2 3456788999999999999864 568999998875 44556666678899999999 777888
Q ss_pred EcCCCcEEEEe
Q 012996 286 GSEDGMVRVWD 296 (451)
Q Consensus 286 ~~~dg~i~iwd 296 (451)
|+.||++++|=
T Consensus 475 gsgdG~~~vyY 485 (641)
T KOG0772|consen 475 GSGDGTAHVYY 485 (641)
T ss_pred ecCCCceEEEE
Confidence 88899998863
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.6e-27 Score=211.58 Aligned_cols=259 Identities=16% Similarity=0.278 Sum_probs=211.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEE-ecceEee-ccCcccCCCCCCccEEEEECCCCcee-eeecC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC-VGQRFLA-SSQLREQPSASSGSILYWSWSKPQVE-VKSLP 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~ 79 (451)
..+++++ .||++++|+-...+.+.+ ....+|.+.+.+ ++ |.+ ++-.+++|+.| .+|.+|...+.... ....|
T Consensus 26 ~~i~s~s-Rd~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~--y~e~~~~~l~~g~~D-~~i~v~~~~~~~P~~~LkgH 100 (745)
T KOG0301|consen 26 VCIISGS-RDGTVKVWAKKGKQYLET-HAFEGPKGFIANSIC--YAESDKGRLVVGGMD-TTIIVFKLSQAEPLYTLKGH 100 (745)
T ss_pred eEEeecC-CCCceeeeeccCcccccc-eecccCcceeeccce--eccccCcceEeeccc-ceEEEEecCCCCchhhhhcc
Confidence 4678888 999999999654444332 223345555655 55 665 34457888888 99999999877765 44679
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|.|++...++. +++|+.|.++++|. .+++...+.+|...|+++...|++ .++||+.|.+|++|.-
T Consensus 101 ~snVC~ls~~~~~~-~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~-------- 168 (745)
T KOG0301|consen 101 KSNVCSLSIGEDGT-LISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG-------- 168 (745)
T ss_pred ccceeeeecCCcCc-eEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--------
Confidence 99999999888887 99999999999996 467778899999999999999987 7999999999999986
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
...++++.+|...|+++++-++. .+++++.||.|++|++ +++.+..+. |..-++++...+++..+++++.
T Consensus 169 -----~~~l~tf~gHtD~VRgL~vl~~~---~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 169 -----GTLLKTFSGHTDCVRGLAVLDDS---HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred -----CchhhhhccchhheeeeEEecCC---CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 34788999999999999999884 7999999999999999 566655554 8999999999899999999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 298 (451)
|+++++|+... +.+.+.-....|+++.+-+..-+++|++||.|+||...
T Consensus 240 DrtlriW~~~e-----------~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 240 DRTLRIWKKDE-----------CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred CceEEEeecCc-----------eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence 99999999863 23444444558888888775557889999999999765
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.9e-28 Score=215.17 Aligned_cols=276 Identities=17% Similarity=0.257 Sum_probs=222.0
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeec----------------------------------CCCCCCceEEecceEee
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKS----------------------------------CASPPHGLACVGQRFLA 48 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~~~~ 48 (451)
..++|++ .|++|++||+..+..-..++. ...+..++.+++ .+|
T Consensus 393 ~cF~TCS-sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~--vSp 469 (1080)
T KOG1408|consen 393 GCFTTCS-SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA--VSP 469 (1080)
T ss_pred cceeEec-CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE--ECC
Confidence 3578999 999999999986332211110 012445788888 999
Q ss_pred ccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECC---CCcEEEEeccCCCEEEEEcCCC-cceeeeccccC
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYR 123 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~ 123 (451)
+|++||+|..- |+++||++....... ...|...|.|+.|+. ..++||+++.|..|.|||+... .++.++.+|..
T Consensus 470 ~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSs 548 (1080)
T KOG1408|consen 470 DGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSS 548 (1080)
T ss_pred CcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccc
Confidence 99999999988 999999998766553 356899999999985 3578999999999999999654 66788999999
Q ss_pred CeeEEEEccCC--cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 124 AVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 124 ~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
.|+++.|..+| ..+++++.|..|.+--...... ...-+..+-......++++++.|.. .++++++.|..|
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~------g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v~t~cQDrni 620 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------GRLFPRHTQTLSKTTLYDMAVDPTS--KLVVTVCQDRNI 620 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccC------ceeccccccccccceEEEeeeCCCc--ceEEEEecccce
Confidence 99999998876 6789999997765433221000 0000111122234578899998887 899999999999
Q ss_pred EEEEcCCCceeeeee----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996 202 KVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (451)
Q Consensus 202 ~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 277 (451)
+|||+.+++..+.|. +.+..-.+..+|.|.|+++.+.|.++.++|+.++ +++.++.+|...|+.+.|
T Consensus 621 rif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG~kF 691 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTGVKF 691 (1080)
T ss_pred EEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheeeeee
Confidence 999999999999987 5577888999999999999999999999999987 678899999999999999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
.+ -+.|++.+.||.|.||.+..
T Consensus 692 ~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 692 LNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cccchhheeecCCceEEEEECch
Confidence 99 89999999999999999764
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.2e-26 Score=176.13 Aligned_cols=271 Identities=17% Similarity=0.301 Sum_probs=214.9
Q ss_pred EEeecCCCCCCeEEEECccCce------------eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996 4 LIASSSVADTGIGCWDLESGAE------------QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~ 71 (451)
+.|+|+ ...+++|--...-.. ...++...-|...|.|.+ |+|+|+++++++.| .+|++..++..
T Consensus 46 lyavgs-nskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~--ws~~geliatgsnd-k~ik~l~fn~d 121 (350)
T KOG0641|consen 46 LYAVGS-NSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA--WSPCGELIATGSND-KTIKVLPFNAD 121 (350)
T ss_pred eEEecc-CCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE--ecCccCeEEecCCC-ceEEEEecccc
Confidence 567788 888888875431111 112233345778899999 99999999999998 99999887644
Q ss_pred cee------eeecCCCCeeEEEECC----CCcEEEEec-cCCCEEEEEcCCCcceeeeccccCCeeEE-EEccCCcEEEE
Q 012996 72 QVE------VKSLPAEPIKPIAANS----HGTYIAGGG-QSGDIYMWEVASGRLLKKWHAHYRAVTCL-VFSEDGSFLIS 139 (451)
Q Consensus 72 ~~~------~~~~~~~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s 139 (451)
... ....|.+.|..++|-. .+.+|++++ .|..|++-|...|+....+.+|.+.|.++ .| ++-.+++
T Consensus 122 t~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw--n~~m~~s 199 (350)
T KOG0641|consen 122 TCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW--NGAMFAS 199 (350)
T ss_pred cccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe--cCcEEEc
Confidence 322 3345889999999954 356777654 46778888999999999999999999887 34 4789999
Q ss_pred eeCCCcEEEeeCcchhhhhhhhcccccceeccc----C---CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT----G---HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~---~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 212 (451)
|+.|.+|++||++- ..++.++. + .+..|.++++.|.+ ++|++|-.|....+||++.++++
T Consensus 200 gsqdktirfwdlrv-----------~~~v~~l~~~~~~~glessavaav~vdpsg--rll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 200 GSQDKTIRFWDLRV-----------NSCVNTLDNDFHDGGLESSAVAAVAVDPSG--RLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred cCCCceEEEEeeec-----------cceeeeccCcccCCCcccceeEEEEECCCc--ceeeeccCCCceEEEEeeCCcee
Confidence 99999999999954 22222221 1 23678899998988 89999999999999999999999
Q ss_pred eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996 213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
+.+. |...|.++.|+|...++++++.|..|++-|+...... .-++.....|...+..+.|+| .--+++.+.|.
T Consensus 267 q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~-----el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 267 QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAH-----ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred eeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhh-----cCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 9887 8899999999999999999999999999999764311 123556677999999999999 88899999999
Q ss_pred cEEEEeCC
Q 012996 291 MVRVWDPI 298 (451)
Q Consensus 291 ~i~iwd~~ 298 (451)
++.+|-++
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999764
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=197.90 Aligned_cols=271 Identities=15% Similarity=0.224 Sum_probs=211.8
Q ss_pred CCCCCCccEEEEECCCCceeeeecCCCC--eeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEc
Q 012996 55 QPSASSGSILYWSWSKPQVEVKSLPAEP--IKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFS 131 (451)
Q Consensus 55 ~~~~d~g~i~vw~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 131 (451)
+++.|...+.+||+.++........... -.++..- .+.|++++.. ...|.+|.+...........-.++|.+++-+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 3344547799999999887665543211 1111111 2356666543 3469999987665554444456889999999
Q ss_pred cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC----
Q 012996 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---- 207 (451)
Q Consensus 132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~---- 207 (451)
|+|.+|+.|+..|.|++|.+.+ ...+..+..|-..|+++.|+.++ .+|+||+.||.|.+|++.
T Consensus 91 n~G~~l~ag~i~g~lYlWelss-----------G~LL~v~~aHYQ~ITcL~fs~dg--s~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSS-----------GILLNVLSAHYQSITCLKFSDDG--SHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred CCceEEEeecccCcEEEEEecc-----------ccHHHHHHhhccceeEEEEeCCC--cEEEecCCCccEEEEEEEeecc
Confidence 9999999998999999999954 56777889999999999999998 899999999999999874
Q ss_pred -----CCceeeeee-cccceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 208 -----KGRLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 208 -----~~~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
+-++...+. |.-+|+.+...+. ..++++++.|.++++||+..+. .+.++ .....+.+++.+|
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~---------LLlti-~fp~si~av~lDp 227 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV---------LLLTI-TFPSSIKAVALDP 227 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce---------eeEEE-ecCCcceeEEEcc
Confidence 234555665 7778999888764 5789999999999999999873 33333 2467899999999
Q ss_pred -CCEEEEEcCCCcEEEEeCCC----------------CceEEEeecCCC--CeeEEEEEecCceeeeccCCCCccccccC
Q 012996 280 -GDLLISGSEDGMVRVWDPIT----------------HNIVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 280 -~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+..++.|+.+|.|.+.++.. +..+..+.+|.+ +|+|++.+-||..|++|+.||.+++||+.
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecc
Confidence 99999999999999887643 234556778888 99999999999999999999999999999
Q ss_pred CCCCCCccc
Q 012996 341 GSQLPPPLD 349 (451)
Q Consensus 341 ~~~~~~~~~ 349 (451)
..++...+.
T Consensus 308 S~Q~iRtl~ 316 (476)
T KOG0646|consen 308 SKQCIRTLQ 316 (476)
T ss_pred hHHHHHHHh
Confidence 887765544
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.4e-27 Score=203.36 Aligned_cols=252 Identities=14% Similarity=0.216 Sum_probs=200.7
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----------eeecCCCCeeEEEECCC-CcEEEEeccCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSH-GTYIAGGGQSG 102 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 102 (451)
|.+.|.-+. +.|....++++..+++.|.|||..+..-. ....|...-+.++|++. .-.|++|+.|+
T Consensus 123 h~gEVnRaR--ymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 123 HDGEVNRAR--YMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred CCccchhhh--hCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 444444444 88988888887777799999998632211 33446666788999884 45788999999
Q ss_pred CEEEEEcCCCc-------ceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 103 DIYMWEVASGR-------LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 103 ~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
.|.+||+.... ....+.+|...|..++|++ +...|++++.|+.+.|||+++ ....+.+...+|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~---------~~~~~~~~~~ah 271 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS---------NTSKPSHSVKAH 271 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC---------CCCCCccccccc
Confidence 99999996543 3456789999999999999 667899999999999999975 234456677889
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCC
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.+.|.|++|+|.+. ..||+|+.|++|++||+|+.. ++..+. |...|.++.|+| ....|++++.|+.+.+||+..-.
T Consensus 272 ~~~vn~~~fnp~~~-~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNE-FILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCceeEEEeCCCCC-ceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 99999999999874 899999999999999999753 455555 889999999999 56788999999999999997643
Q ss_pred CCCC-----CCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996 252 PSTS-----SYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 252 ~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~ 298 (451)
.... .....++....||...|..+.|+| .-.+++.+.|+.+.||...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2221 123455677889999999999999 5678888999999999975
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.9e-29 Score=224.89 Aligned_cols=246 Identities=20% Similarity=0.350 Sum_probs=220.3
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
-.+++|+.... ..|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++..+|++|
T Consensus 14 t~Lr~~~~~~~-----~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag 88 (825)
T KOG0267|consen 14 TKLRVWDTREF-----VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG 88 (825)
T ss_pred eccccccchhh-----hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc
Confidence 56677775432 3367788888887788999999999999999998888888899999999999999999999999
Q ss_pred eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-ccc
Q 012996 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPS 219 (451)
Q Consensus 141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~ 219 (451)
+.+|+|++||+.. ...++++.+|...+.++.|+|-+ .+.++|+.|+.+++||++..-+...+. |..
T Consensus 89 sasgtiK~wDlee-----------Ak~vrtLtgh~~~~~sv~f~P~~--~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 89 SASGTIKVWDLEE-----------AKIVRTLTGHLLNITSVDFHPYG--EFFASGSTDTDLKIWDIRKKGCSHTYKSHTR 155 (825)
T ss_pred ccCCceeeeehhh-----------hhhhhhhhccccCcceeeeccce--EEeccccccccceehhhhccCceeeecCCcc
Confidence 9999999999954 55678999999999999999998 899999999999999999888888777 788
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
.+..+.|+|+|++++.|+.|..+++||+..+ .....+..|...+.++.|+| .-++++|+.|++|++||++
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 8999999999999999999999999999887 55778899999999999999 8899999999999999999
Q ss_pred CCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
+.+.+.........|.++.|+|++..+++|.....
T Consensus 227 tfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 227 TFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 99999988888889999999999999998865543
No 122
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=1.8e-27 Score=223.30 Aligned_cols=263 Identities=21% Similarity=0.281 Sum_probs=215.5
Q ss_pred ecCCCCeeEEEECCCCcEEEEec--cCCCEEEEEcCC------------CcceeeeccccCCeeEEEEccCCcEEEEeeC
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEVAS------------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE 142 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 142 (451)
.++...|.+++.+|+|..+|+|+ .||.+.||+... .+.+.++..|.+.|+|+.|+|||++||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 33466799999999999999999 899999998642 2455677889999999999999999999999
Q ss_pred CCcEEEeeCcchh--h-----hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996 143 DGCVRIWSLLTVF--E-----ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (451)
Q Consensus 143 dg~i~vwd~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 215 (451)
|+.|.||+..... . ..............+.+|...|.+++|+|++ .++++++.|++|.+|+.++.+.+..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~--~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD--SLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc--cEEEEecccceEEEEccccceeeeee
Confidence 9999999987310 0 1112234556778899999999999999988 89999999999999999999888888
Q ss_pred e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEEEec-CCEEEEEc
Q 012996 216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~l~s~~ 287 (451)
. |.+.|..+.|+|-|++|++-+.|++|++|++.... ....+.+ .......+.||| |.+|++..
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~---------i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG---------IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccce---------eeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 7 89999999999999999999999999999976632 2222222 234678899999 99999974
Q ss_pred C----CCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-----Cc------------eeeeccCCCCccccccCCCCCCC
Q 012996 288 E----DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PL------------YLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 288 ~----dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~------------~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
. -.++.|.+-.+.+.-..+-+|.+++.++.|+|. .. .+|+||.|+++-||.....++.-
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 3 346899998888888899999999999999971 11 57999999999999987655544
Q ss_pred cccc
Q 012996 347 PLDK 350 (451)
Q Consensus 347 ~~~~ 350 (451)
....
T Consensus 319 vi~~ 322 (942)
T KOG0973|consen 319 VIHN 322 (942)
T ss_pred hhhh
Confidence 4333
No 123
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=4.2e-27 Score=208.30 Aligned_cols=321 Identities=17% Similarity=0.257 Sum_probs=227.5
Q ss_pred CeEEEeecCCCCCCeEEEECccCcee---eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--
Q 012996 1 MELLIASSSVADTGIGCWDLESGAEQ---LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-- 75 (451)
Q Consensus 1 ~e~~l~s~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-- 75 (451)
||-+||.+. .||.|.++|...-... +.|+....|-+.|..+. |.|....|++++.| .++++||+++..+.-
T Consensus 63 ~eHiLavad-E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~--wapge~~lVsasGD-sT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 63 KEHILAVAD-EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLK--WAPGESLLVSASGD-STIRPWDVKTSRLVGGR 138 (720)
T ss_pred ccceEEEec-CCCceeeecchhhhcchhhhhhcccccccceeEeec--cCCCceeEEEccCC-ceeeeeeeccceeecce
Confidence 577899999 9999999997643322 33556667889999999 99977777888887 999999999877653
Q ss_pred -eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc--------------------c-------eeeeccccCCee
Q 012996 76 -KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR--------------------L-------LKKWHAHYRAVT 126 (451)
Q Consensus 76 -~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------------------~-------~~~~~~~~~~v~ 126 (451)
...|...|.+++|.|. ...|++|+.||.|.|||++-.. . +.....+...|.
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ 218 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIF 218 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCcee
Confidence 4668999999999995 5678999999999999985321 0 111223444555
Q ss_pred E---EEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCC---cCceeEEEEeecCCeeEEEEeeCCC
Q 012996 127 C---LVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGH---TLRITDIVIGYGGVSATIVSASEDR 199 (451)
Q Consensus 127 ~---~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~~l~s~~~d~ 199 (451)
+ +.+..|...|++++. |+.|+|||+++......... .....+..| ...+.++.....| .++++.+.|+
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep---~~~~~~~t~skrs~G~~nL~lDssG--t~L~AsCtD~ 293 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP---RGSDKYPTHSKRSVGQVNLILDSSG--TYLFASCTDN 293 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC---CcccCccCcccceeeeEEEEecCCC--CeEEEEecCC
Confidence 4 555568888999888 99999999987544332221 112222333 3455666665555 7888888899
Q ss_pred cEEEEEcCCCce--eeeeec---ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996 200 TCKVWSLLKGRL--LRNIVF---PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (451)
Q Consensus 200 ~i~iwd~~~~~~--~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (451)
.|++|++.+-.. +..+.+ ...-..-..+|++.++++|+.|...++|.+.... .....+.+|...|++
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~ 365 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------APPALLLGHTREVTT 365 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------CChhhhhCcceEEEE
Confidence 999999986432 222221 1112234568999999999999999999999875 556678899999999
Q ss_pred EEEec--CCEEEEEcCCCcEEEEeCCCCc--------------eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 275 LAYST--GDLLISGSEDGMVRVWDPITHN--------------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 275 ~~~~~--~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
++|.| -.-+++++.|..++||++..+- ....+++|.-.+..+.++-.+.+..-. .+..++|.
T Consensus 366 V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 366 VRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred EeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhcccccc
Confidence 99999 5567778999999999986542 233455666666666666544433332 44555555
Q ss_pred cC
Q 012996 339 RH 340 (451)
Q Consensus 339 ~~ 340 (451)
..
T Consensus 444 sP 445 (720)
T KOG0321|consen 444 SP 445 (720)
T ss_pred Cc
Confidence 44
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=218.37 Aligned_cols=275 Identities=17% Similarity=0.202 Sum_probs=219.0
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeee----cC----CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC---Cc
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS----LP----AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR 113 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~~----~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~ 113 (451)
..++-..++.+|. ..+.||.++........ .. .-.+..+.|.. +.++||+++.+|.|.+||+.. .+
T Consensus 47 ~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk 124 (839)
T KOG0269|consen 47 VNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK 124 (839)
T ss_pred ecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccccch
Confidence 5567777888887 58899987654332111 11 12345667764 578999999999999999987 56
Q ss_pred ceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 114 LLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
++..|..|...++++.|++ ...+|++|+.||.|++||++. .....++.+....|.++.|+|... ..+
T Consensus 125 ~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------~~S~~t~~~nSESiRDV~fsp~~~-~~F 192 (839)
T KOG0269|consen 125 LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------KKSKSTFRSNSESIRDVKFSPGYG-NKF 192 (839)
T ss_pred hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------ccccccccccchhhhceeeccCCC-ceE
Confidence 7788999999999999998 667899999999999999965 334566777889999999999864 899
Q ss_pred EEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 193 VSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
+++...|.+++||++.... ...+. |.++|.++.|+|++.+||+|+.|+.|+|||+.+... .+..++. ...
T Consensus 193 ~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tIn-Tia 264 (839)
T KOG0269|consen 193 ASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTIN-TIA 264 (839)
T ss_pred EEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEEe-ecc
Confidence 9999999999999987543 33343 999999999999999999999999999999987542 2232332 357
Q ss_pred ceeEEEEec--CCEEEEEcC--CCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCCC
Q 012996 271 AVTCLAYST--GDLLISGSE--DGMVRVWDPITH-NIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 271 ~v~~~~~~~--~~~l~s~~~--dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
+|.++.|-| ...|++++. |-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||++..-.++..
T Consensus 265 pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 265 PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 999999999 667777764 778999999754 46678999999999999976 6678899999999877665543
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-26 Score=205.53 Aligned_cols=319 Identities=18% Similarity=0.169 Sum_probs=249.0
Q ss_pred eEEEeecCCCCCCeEEEECccCce---------------------eeeee-------cCCCCCCceEEecceEeeccCcc
Q 012996 2 ELLIASSSVADTGIGCWDLESGAE---------------------QLRYK-------SCASPPHGLACVGQRFLASSQLR 53 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~---------------------~~~~~-------~~~~~~~~v~~~~~~~~~~~~~l 53 (451)
+++||+++ +|..||||.+.-+.. ..++. ...+|.+.|.++- |+|.+..|
T Consensus 206 ~~~laS~S-QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~--W~p~~~~L 282 (764)
T KOG1063|consen 206 DLLLASSS-QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW--WHPEGLDL 282 (764)
T ss_pred cEEEEecC-CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE--Eccchhhh
Confidence 57899999 999999998764331 11111 1236888898888 99999999
Q ss_pred cCCCCCCccEEEEECCCCcee----eee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC---cceeeecccc
Q 012996 54 EQPSASSGSILYWSWSKPQVE----VKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG---RLLKKWHAHY 122 (451)
Q Consensus 54 ~~~~~d~g~i~vw~~~~~~~~----~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~ 122 (451)
++++.| .++.+|.-....-. .+. .........-|+|+++.+++-+..|..++|...+. .......+|.
T Consensus 283 LSASaD-ksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSASAD-KSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecccC-cceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 999998 99999987755311 111 12456889999999999999999999999984332 2344568999
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~ 202 (451)
+.|.++.|+|.|.+|++.|.|-+-+++-.-.. ......+...+.|...++|+++-+.. ..+++|.....+|
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-------q~~wHEiaRPQiHGyDl~c~~~vn~~--~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-------QQEWHEIARPQIHGYDLTCLSFVNED--LQFVSGADEKVLR 432 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeeccccc-------ccceeeecccccccccceeeehccCC--ceeeecccceeee
Confidence 99999999999999999999999999876310 01233445556788899999998854 7899999999999
Q ss_pred EEEcCC----------C----------------------ceee-------------------------------------
Q 012996 203 VWSLLK----------G----------------------RLLR------------------------------------- 213 (451)
Q Consensus 203 iwd~~~----------~----------------------~~~~------------------------------------- 213 (451)
+|+... + +...
T Consensus 433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~ 512 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN 512 (764)
T ss_pred eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence 998731 0 0000
Q ss_pred --------eeecccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996 214 --------NIVFPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (451)
Q Consensus 214 --------~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 279 (451)
.+.|...|.+++.+|+++++++++... .|++|+..+. .....+.+|+-.|+.|+|||
T Consensus 513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---------~~~~~L~~HsLTVT~l~FSpd 583 (764)
T KOG1063|consen 513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---------LQVQELEGHSLTVTRLAFSPD 583 (764)
T ss_pred ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---------hhhheecccceEEEEEEECCC
Confidence 001233799999999999999998654 6999998875 44567899999999999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 280 GDLLISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 280 ~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
+++|++.|.|.++.+|...... .....+.|.--|++..|+|++.+|+|+|.|..|++|.....
T Consensus 584 g~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 584 GRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999874322 23346789899999999999999999999999999998765
No 126
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=6.4e-26 Score=182.80 Aligned_cols=291 Identities=15% Similarity=0.175 Sum_probs=217.1
Q ss_pred EEEeecCCCCCCeEEEECccCc------------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC
Q 012996 3 LLIASSSVADTGIGCWDLESGA------------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK 70 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~ 70 (451)
-++++|+ .||.|.|||++... ++-.-+...+|..+|..+- |.|-..-+++.++-|.+++|||.++
T Consensus 57 rymlSGg-adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~--WyP~DtGmFtssSFDhtlKVWDtnT 133 (397)
T KOG4283|consen 57 RYMLSGG-ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAI--WYPIDTGMFTSSSFDHTLKVWDTNT 133 (397)
T ss_pred eEEeecC-CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeE--EeeecCceeecccccceEEEeeccc
Confidence 5789999 99999999987443 1111122345667777777 8886666555555559999999999
Q ss_pred CceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcE
Q 012996 71 PQVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCV 146 (451)
Q Consensus 71 ~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i 146 (451)
.+.......++.|.+-+++|- ..++|+|..+-.|++-|+.+|..-.++.+|.+.|.++.|+|...+ |++|+.||.|
T Consensus 134 lQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 134 LQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred ceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 998888888899999999983 457888899999999999999999999999999999999996655 7799999999
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~ 226 (451)
++||++.. ..+...+..|.. . +.........|.+.+..++|
T Consensus 214 rlWDiRra----------sgcf~~lD~hn~------------------------k-----~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 214 RLWDIRRA----------SGCFRVLDQHNT------------------------K-----RPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred EEEEeecc----------cceeEEeecccC------------------------c-----cCccccccccccceeeeeee
Confidence 99999541 011111222211 0 00111123347889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996 227 DPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM 305 (451)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~ 305 (451)
..++.++++++.|.++++|+...+......++...-. ...|. .+. +. +- ...++---.++.+.++++-++..++.
T Consensus 255 tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n-~~~~~-~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 255 TSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHN-QTTSF-AVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred cccchhhhhccCccceEEeecccCccccccccccccc-ccccc-eEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEe
Confidence 9999999999999999999998876443333221111 11111 111 22 22 34455455669999999999999999
Q ss_pred eecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 306 FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 306 ~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
+..|...|.+.++-|+-+...++..|+.+..|..
T Consensus 331 l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 331 LSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eecccceeeEEeecCchhhhhccccCCccccccc
Confidence 9999889999999999999999999999999986
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=1.7e-25 Score=200.04 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=199.7
Q ss_pred cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996 52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF 130 (451)
Q Consensus 52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 130 (451)
.+++++.+ +.|.+||..+++..........+.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+.|
T Consensus 3 ~~~s~~~d-~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKD-NTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEEecCC-CEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 45566666 99999999887765554444567889999999876 5667889999999999888777765544 567899
Q ss_pred ccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCC
Q 012996 131 SEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLK 208 (451)
Q Consensus 131 ~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~ 208 (451)
+|+++.++++ +.++.+.+||+.+ ...+..+. +...+.+++|++++ .++++++.++ .+.+||..+
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~-----------~~~~~~~~-~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET-----------RKVLAEIP-VGVEPEGMAVSPDG--KIVVNTSETTNMAHFIDTKT 146 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC-----------CeEEeEee-CCCCcceEEECCCC--CEEEEEecCCCeEEEEeCCC
Confidence 9999877654 5689999999954 22233332 22345788999988 7888877765 567789988
Q ss_pred CceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccC-------CcceeEEEEec-
Q 012996 209 GRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH-------SKAVTCLAYST- 279 (451)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~- 279 (451)
++..........+.+++|+|++.+|++++ .++.|++||+.+... +..+..+ ......++|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 147 YEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred CeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECCC
Confidence 87776665556678899999999886554 689999999987632 2222111 11235688999
Q ss_pred CCEEEE-EcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec-cCCCCccccccCCCCCCCc
Q 012996 280 GDLLIS-GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 280 ~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s~d~~i~iw~~~~~~~~~~ 347 (451)
++++++ .+.++.|.+||..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|.+|+..+..+...
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 777544 4557789999999988877654 34579999999999999876 5689999999987654433
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=8.5e-27 Score=206.33 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=108.1
Q ss_pred ceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEe
Q 012996 220 VIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 220 ~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd 296 (451)
.|+.+.|+| |...|++++.||.|++|.+..+.... ..+.+-..+..|...|+++.|+| .+.|++++.|.+|++||
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCc--ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 577889999 77899999999999999998765322 22355667889999999999999 89999999999999999
Q ss_pred CCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 297 PITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 297 ~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
+.+++....+.+|.+.|.+++|||||+.+|+.+.||++++|+....
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 9999999999999999999999999999999999999999997644
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=210.53 Aligned_cols=276 Identities=16% Similarity=0.198 Sum_probs=224.0
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-ceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-QVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
.|..+.+.++ |.|+|.++.+++.| |.|++|+.... ..+.... +...|.+++.. +++|++|+.++.|.+|.+.+
T Consensus 11 aht~G~t~i~--~d~~gefi~tcgsd-g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLIC--YDPDGEFICTCGSD-GDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEE--EcCCCCEEEEecCC-CceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 3556678888 99999999999998 99999998765 3322222 67788888775 55899999999999999998
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
++.-..+....-++++++|+.+|++++.||.|-.|++-++.+ ......+.+|.++|.++.++|.+ ++
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-----------~s~~~~lrgh~apVl~l~~~p~~--~f 152 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-----------SSQEKVLRGHDAPVLQLSYDPKG--NF 152 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-----------cchheeecccCCceeeeeEcCCC--CE
Confidence 877666666778899999999999999999999999999844 44567789999999999999998 89
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
|++.+.||.|++||+.++.+...+. ....+..++|+|++..|++.+.|+.|.+|+..+.... ..
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~-------f~ 225 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ-------FK 225 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh-------ee
Confidence 9999999999999999987766554 1345678999999999999999999999999886421 11
Q ss_pred eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 263 ~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.....+...+.++.|+| |.|||+++.||.|.|||+.+... ......|++++|.|+..-+.....-|...+|-
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~~ 298 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVSP 298 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccCh
Confidence 22233455699999999 99999999999999999998322 22345899999999998776665556555553
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=6.2e-27 Score=201.65 Aligned_cols=264 Identities=16% Similarity=0.250 Sum_probs=215.5
Q ss_pred EEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-
Q 012996 4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP- 79 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~- 79 (451)
.+.||+ .|.|+|||+.... .+..+ .+....+.|..+. .+|+|+.|++||.- .++.|||+..+...++...
T Consensus 433 hVyTgG--kgcVKVWdis~pg~k~PvsqL-dcl~rdnyiRSck--L~pdgrtLivGGea-stlsiWDLAapTprikaelt 506 (705)
T KOG0639|consen 433 HVYTGG--KGCVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCK--LLPDGRTLIVGGEA-STLSIWDLAAPTPRIKAELT 506 (705)
T ss_pred eeEecC--CCeEEEeeccCCCCCCccccc-cccCcccceeeeE--ecCCCceEEecccc-ceeeeeeccCCCcchhhhcC
Confidence 356666 7899999987432 22222 2223556677777 99999999999997 9999999987776555332
Q ss_pred --CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 80 --AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 80 --~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
.-.+.+++.+||.+..++++.||.|.|||+.+...++.|++|.+.+.||..++||..|.||+.|.+|+.||++++..
T Consensus 507 ssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq- 585 (705)
T KOG0639|consen 507 SSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ- 585 (705)
T ss_pred CcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999976321
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
... ......|.++-.+|.+ .+++.|-.++.+.+......+....-.|.+.|.++.|.+.|+++++.+
T Consensus 586 --------lqq---hdF~SQIfSLg~cP~~--dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 586 --------LQQ---HDFSSQIFSLGYCPTG--DWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred --------hhh---hhhhhhheecccCCCc--cceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence 111 1235678889899988 899999999999999887666555556899999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
.|+.+..|.+..+.. +... .....|.++.+|. .++++||+.|..-.||.+
T Consensus 653 kDnlLnawrtPyGas---------iFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGAS---------IFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred chhhhhhccCccccc---------eeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999887642 2222 2467899999998 999999999998888865
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.6e-26 Score=183.70 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=209.7
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-----eeecCCCCeeEEEECCCCcEEEEecc-CCCEEE
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYM 106 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 106 (451)
.+|...|++++ |+.+|++||+++.| +.|++|+++.-... ......+..+.+.|+||.+-+++... ...+++
T Consensus 83 KgH~~~vt~~~--FsSdGK~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 83 KGHKKEVTDVA--FSSDGKKLATISGD-RSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hccCCceeeeE--EcCCCceeEEEeCC-ceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 46778899999 99999999999999 99999998753321 22224457899999999876655544 456999
Q ss_pred EEcCC---Cccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 107 WEVAS---GRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 107 wd~~~---~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
|.+.. |.... .-+.|.-.|..+-...++.+|++++.|..|.+|+++ .+.+..+...
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk------------Gq~L~~idtn 227 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK------------GQLLQSIDTN 227 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC------------Cceeeeeccc
Confidence 97642 22111 113466677777777789999999999999999993 4456666666
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC---CCc-----eeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KGR-----LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~---~~~-----~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (451)
...-+..+++|+| +++++++..--|++|.+- .|. .+..+. |.+.|..++|+|+...+++.+.||.+++|
T Consensus 228 q~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 228 QSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred cccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEe
Confidence 6667778899999 899999999999999863 221 122333 78899999999999999999999999999
Q ss_pred EccCCCCCCCCCCceeeee----eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEE
Q 012996 246 ALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVV 319 (451)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s 319 (451)
|++-.-.... .+..+.+ +..-.+....+.++| ++.|+.+ ....+.+|..++++...+++ .|.+.|++++|+
T Consensus 306 dtdVrY~~~q--Dpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~ 382 (420)
T KOG2096|consen 306 DTDVRYEAGQ--DPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYS 382 (420)
T ss_pred eccceEecCC--CchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEec
Confidence 9865321110 0111111 222234445899999 7777765 45679999999998887765 688999999999
Q ss_pred ecCceeeeccCCCCcccc
Q 012996 320 RRPLYLNLGSFSNPHTSS 337 (451)
Q Consensus 320 ~~~~~l~~~s~d~~i~iw 337 (451)
++|+++++++. ..+++.
T Consensus 383 ~~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 383 SDGKYIATCGD-RYVRVI 399 (420)
T ss_pred CCCcEEeeecc-eeeeee
Confidence 99999999874 444443
No 132
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-26 Score=180.76 Aligned_cols=232 Identities=18% Similarity=0.277 Sum_probs=185.2
Q ss_pred EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEee--ccCcccCCCCCCccEEEEECCCCcee---
Q 012996 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKPQVE--- 74 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~~~~--- 74 (451)
..|||++ .|++|+|+..+... .+.++.+|.++ +.-++ |.. -|.+||+++.| |.|.||.-.+++..
T Consensus 24 krlATcs-SD~tVkIf~v~~n~~s~ll~~L~Gh~GP---Vwqv~--wahPk~G~iLAScsYD-gkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 24 KRLATCS-SDGTVKIFEVRNNGQSKLLAELTGHSGP---VWKVA--WAHPKFGTILASCSYD-GKVIIWKEENGRWTKAY 96 (299)
T ss_pred ceeeeec-CCccEEEEEEcCCCCceeeeEecCCCCC---eeEEe--ecccccCcEeeEeecC-ceEEEEecCCCchhhhh
Confidence 5799999 99999999988654 45666666555 55555 654 79999999999 99999998887543
Q ss_pred eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCC---cceeeeccccCCeeEEEEccC---C-----------c
Q 012996 75 VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKKWHAHYRAVTCLVFSED---G-----------S 135 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~ 135 (451)
....|...|++++|.|. |-.|++++.||.|.|.+.++. ........|.-.|++++|.|. | +
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 23447889999999885 678999999999999998755 223445789999999999985 4 5
Q ss_pred EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC--CeeEEEEeeCCCcEEEEEcCCCcee-
Q 012996 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLLKGRLL- 212 (451)
Q Consensus 136 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~- 212 (451)
.|++|+.|..|+||+... ........+.+|...|+.++|.|.- ....|++++.||+|.||-.+.....
T Consensus 177 rlvSgGcDn~VkiW~~~~---------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDS---------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred eeeccCCccceeeeecCC---------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 699999999999999966 3455566799999999999999864 2368999999999999987632111
Q ss_pred -eee--ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 213 -RNI--VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 213 -~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.++ .++..+..+.|++.|+.|++++.|+.+.+|.-+..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 111 15778999999999999999999999999976543
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=7.9e-26 Score=183.91 Aligned_cols=287 Identities=12% Similarity=0.123 Sum_probs=214.8
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 117 (451)
..|+. |++.|.+||+|+.+ |.|.+||+.+..+. ....|-.+|.+++||+||+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~--Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQ--FSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEE--eccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 45566 99999999999999 99999999887654 3356889999999999999999999999999999999999888
Q ss_pred eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC--cCceeEEEEeecCCeeEEEE
Q 012996 118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~~l~s 194 (451)
+. ...+|+...|+| +.+.+++.-.+..-.+-++... ....+..-... ...-.+..|.+.| +++++
T Consensus 103 ir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---------~h~~Lp~d~d~dln~sas~~~fdr~g--~yIit 170 (405)
T KOG1273|consen 103 IR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---------KHSVLPKDDDGDLNSSASHGVFDRRG--KYIIT 170 (405)
T ss_pred EE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC---------ceeeccCCCccccccccccccccCCC--CEEEE
Confidence 86 678999999999 3344444444444555555321 11111110100 1111122455666 89999
Q ss_pred eeCCCcEEEEEcCCCceeeeeec--ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCc
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSK 270 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~ 270 (451)
|...|.+.++|..+.+++..+.. ...|..+.++..|+.|+.-+.|..|+.|++..-..........+...++. ...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 99999999999999999988873 36899999999999999999999999999874321111111122222221 123
Q ss_pred ceeEEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 271 AVTCLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+-.+++|+. |.|+++|+. -..++||....|.+++.+.+.. ....++.|+|-...+++. ..|.+++|....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 446788888 888888875 3469999999999999999887 467889999998888887 789999999663
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=209.05 Aligned_cols=235 Identities=18% Similarity=0.252 Sum_probs=197.8
Q ss_pred Eee-ccCcccCCCCCCccEEEEECCCC---c-eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996 46 FLA-SSQLREQPSASSGSILYWSWSKP---Q-VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (451)
Q Consensus 46 ~~~-~~~~l~~~~~d~g~i~vw~~~~~---~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 119 (451)
|.. +.++||+++.. |.|.+||+... . ......|...+.+++|++ ..++|++|+.||.|++||++..+...++.
T Consensus 95 W~~~~~NlIAT~s~n-G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 95 WGQLYSNLIATCSTN-GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred cccchhhhheeecCC-CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 553 46778888887 99999999862 2 223345889999999988 56788999999999999999999999999
Q ss_pred cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996 120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 120 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
+....|.+++|+| .+..|+++...|.+++||++. ...+...+..|.++|.++.|+|+. .+|+||+.|
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq----------p~r~~~k~~AH~GpV~c~nwhPnr--~~lATGGRD 241 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ----------PDRCEKKLTAHNGPVLCLNWHPNR--EWLATGGRD 241 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccC----------chhHHHHhhcccCceEEEeecCCC--ceeeecCCC
Confidence 9999999999999 778899999999999999975 455777889999999999999977 899999999
Q ss_pred CcEEEEEcCCCc--eeeeeecccceeEEEECCCCCE-EEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996 199 RTCKVWSLLKGR--LLRNIVFPSVIDAIALDPAEHV-FYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (451)
Q Consensus 199 ~~i~iwd~~~~~--~~~~~~~~~~i~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 273 (451)
+.|+|||..+++ .+.++....++.++.|-|...+ |++++ .|-.|++||++..- -+..++..|...++
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVT 313 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc--------ccceeeeccCcccc
Confidence 999999998654 4566667889999999997655 55543 46789999999864 56778899999999
Q ss_pred EEEEec--CCEEEEEcCCCcEEEEeCCCCc
Q 012996 274 CLAYST--GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 274 ~~~~~~--~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
.++|.. ...|.+++.||+|..-.+++..
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 999987 6789999999998776665543
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.1e-25 Score=189.13 Aligned_cols=294 Identities=19% Similarity=0.301 Sum_probs=224.4
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeec--cCcccCCC-CCCccEEEEECCCCceeee-ecCCCCeeEEEEC
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS--SQLREQPS-ASSGSILYWSWSKPQVEVK-SLPAEPIKPIAAN 89 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~-~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~ 89 (451)
.+++||..+...+..+- ....+|.|++ |++. |.+++... +.+..+.|||+..+..... ...++.|....|+
T Consensus 135 hvriWdsv~L~TL~V~g---~f~~GV~~va--Fsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FH 209 (626)
T KOG2106|consen 135 HVRIWDSVTLSTLHVIG---FFDRGVTCVA--FSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFH 209 (626)
T ss_pred eeeecccccceeeeeec---cccccceeee--ecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEec
Confidence 49999988777776664 4557899999 8863 44544432 2237899999987665433 3356788999999
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCcceee---eccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|.+..+++....|.+.+|+.+.+.+... +..+ ...|.|++|.++|. +++|..+|.|.||+..+ .
T Consensus 210 Ptd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~-----------~ 277 (626)
T KOG2106|consen 210 PTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT-----------N 277 (626)
T ss_pred cCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC-----------c
Confidence 9766665556678999999988866543 3322 36799999999987 78999999999999843 3
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--------------------------------
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-------------------------------- 213 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-------------------------------- 213 (451)
...+....|.+.|.+++...+| .|++|+.|+.|..||- .-+.++
T Consensus 278 ~~~k~~~aH~ggv~~L~~lr~G---tllSGgKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 278 RISKQVHAHDGGVFSLCMLRDG---TLLSGGKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred eEEeEeeecCCceEEEEEecCc---cEeecCccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 3344444899999999999887 6777999999999983 111111
Q ss_pred ----------eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCE
Q 012996 214 ----------NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDL 282 (451)
Q Consensus 214 ----------~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 282 (451)
.+.|......++.+|+...+++++.|+.+++|+ .. ++.-+ ..-..++.|+.|+| | .
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~---------k~~wt-~~~~d~~~~~~fhpsg-~ 420 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH---------KLEWT-KIIEDPAECADFHPSG-V 420 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CC---------ceeEE-EEecCceeEeeccCcc-e
Confidence 111334567788999999999999999999999 22 11111 12357889999999 7 9
Q ss_pred EEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 283 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
++.|...|...+.|.++...+..-.. ..+++.+.|+|+|.+||.|+.|+.|.+|.+...
T Consensus 421 va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 421 VAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 99999999999999999766655555 889999999999999999999999999998744
No 136
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.9e-27 Score=211.36 Aligned_cols=245 Identities=22% Similarity=0.445 Sum_probs=212.5
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS 90 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~ 90 (451)
+-.+++||.... ..|...+.++. .-..++.+++||.+ ..+-+|.......... ..|..+|.++.|++
T Consensus 13 ~t~Lr~~~~~~~---------~~hsaav~~lk--~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 13 ATKLRVWDTREF---------VAHSAAVGCLK--IRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred eeccccccchhh---------hhhhhhhceee--eeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeecCc
Confidence 556778875421 12444555555 55677888888888 8888999887665544 77999999999999
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
+..+|++|+.+|+|++||+..++.++++.+|...+..+.|+|-+.++++|+.|+.+++||.+ ...+.+.
T Consensus 81 ~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R-----------k~Gc~~~ 149 (825)
T KOG0267|consen 81 SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR-----------KKGCSHT 149 (825)
T ss_pred chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh-----------ccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999994 3557888
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
+.+|...+..+.|+|+| .++++++.|.++++||...|+....|. |...+.++.|+|..-.++.|+.|+.+++||+.+
T Consensus 150 ~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred ecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 89999999999999999 899999999999999999999999998 899999999999999999999999999999997
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
. ..+.........|.+.+|+| +..+++|....
T Consensus 228 f---------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 228 F---------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred e---------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 4 55666666678999999999 88888876554
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5e-25 Score=196.62 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=230.8
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
-.+..|.+++ |+...+.||++-.+ |.|.+|++...-..... .....|.+++|++. ..|++.+.+|.|.-||+.
T Consensus 23 ~~Ps~I~slA--~s~kS~~lAvsRt~-g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 23 YKPSEIVSLA--YSHKSNQLAVSRTD-GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eeccceEEEE--EeccCCceeeeccC-CcEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecc
Confidence 4568899999 99999999988888 99999999876554333 34678999999954 457777889999999999
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
+++.+..+....+.|++++.+|.+..++.|+.||.+..++... .....-..+...++.|.++.|.+++ .
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p---------~~I~~~r~l~rq~sRvLslsw~~~~--~ 167 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGP---------DKITYKRSLMRQKSRVLSLSWNPTG--T 167 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCC---------ceEEEEeecccccceEEEEEecCCc--c
Confidence 9999999999999999999999999999999999777777744 2333445556667999999999998 7
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (451)
.+++|+.||.|++||..++..+.... .+.-|.++.+- ....+++|..-|.|.+||...+ ..
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~g---------TL 237 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFG---------TL 237 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCc---------ch
Confidence 89999999999999999988776222 12346677766 4567899999999999999887 55
Q ss_pred eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce----EEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
+..+..|...|.+++..+ ++++++++.|+.|.-|...+... ......|...|.+++..++ .|++|+.|.++.+
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 777888999999999999 89999999999999998766533 2234578889999999987 8999999998877
Q ss_pred cccC
Q 012996 337 SRRH 340 (451)
Q Consensus 337 w~~~ 340 (451)
-...
T Consensus 316 ~~s~ 319 (691)
T KOG2048|consen 316 CSSR 319 (691)
T ss_pred cccc
Confidence 6544
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1e-25 Score=212.69 Aligned_cols=247 Identities=21% Similarity=0.288 Sum_probs=204.5
Q ss_pred CCCCeeEEEECCCCcE----EEEeccCCCEEEEEcCCC------cceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEE
Q 012996 79 PAEPIKPIAANSHGTY----IAGGGQSGDIYMWEVASG------RLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVR 147 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~ 147 (451)
.....+.++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|++. +++|++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3568899999987765 888999999999998652 346677889999999999994 55999999999999
Q ss_pred EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEE
Q 012996 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAI 224 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~ 224 (451)
|||+.+.... ....-......|.+++|+..-. .+|++++.+|++.|||++..+.+-.+... ..+..+
T Consensus 143 iWDlnn~~tP---------~~~~~~~~~~eI~~lsWNrkvq-hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 143 IWDLNKPETP---------FTPGSQAPPSEIKCLSWNRKVS-HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred EeccCCcCCC---------CCCCCCCCcccceEeccchhhh-HHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 9999662211 1111223567899999987543 78999999999999999999888777633 348899
Q ss_pred EECCCC-CEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996 225 ALDPAE-HVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 225 ~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~ 298 (451)
+|+|+. ..+++++.|. .|.+||++... .++..+.+|...|.+|.|++ ..+|++++.|+.|.+|+.+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~as--------sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccC--------CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 999965 4566666554 69999999875 66778899999999999999 4899999999999999999
Q ss_pred CCceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCCCC
Q 012996 299 THNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~~~ 343 (451)
+++.+..+......+..+.|.|... .++.++.||.|-|+.+.+..
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999998888999999999665 88999999999999988765
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=5.8e-26 Score=183.04 Aligned_cols=216 Identities=22% Similarity=0.301 Sum_probs=177.5
Q ss_pred eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhc-cccc---ceecccCCcCceeEEEEeecCCeeEE
Q 012996 118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQR-ASHL---YLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~---~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
...|.+.|+++...+ .|+++++|+.||.|.+||+........... .... ....-.+|.-.|.++.|-|-.. ..+
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt-GmF 117 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT-GMF 117 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-cee
Confidence 356889999999988 789999999999999999976432111110 0111 1223457889999999998765 588
Q ss_pred EEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC---CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 193 VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
.+++.|.++++||..+.+....|..++.|++-+++|- .-++++|..+-.|++.|+..+ ....++.+|.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG---------s~sH~LsGHr 188 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG---------SFSHTLSGHR 188 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC---------cceeeecccc
Confidence 8999999999999999999999999999999999993 457888889999999999998 4567899999
Q ss_pred cceeEEEEec--CCEEEEEcCCCcEEEEeCCCC-ceEEEee--------------cCCCCeeEEEEEecCceeeeccCCC
Q 012996 270 KAVTCLAYST--GDLLISGSEDGMVRVWDPITH-NIVRMFR--------------LAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 270 ~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
..|.++.|+| .-.|++|+.||.|++||++.. .+...+. .|.+.|..++|+.++.++++++.|.
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 9999999999 667899999999999999754 3444333 5667899999999999999999999
Q ss_pred CccccccCCCC
Q 012996 333 PHTSSRRHGSQ 343 (451)
Q Consensus 333 ~i~iw~~~~~~ 343 (451)
.+++|+...+.
T Consensus 269 r~r~wn~~~G~ 279 (397)
T KOG4283|consen 269 RIRVWNMESGR 279 (397)
T ss_pred ceEEeecccCc
Confidence 99999976543
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=204.01 Aligned_cols=254 Identities=17% Similarity=0.218 Sum_probs=207.0
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.+..|....+.|+|.|+|.+|++++.||.|++|+..+. +...++..+...|.+++.. +.+|++|+.+++|.+|.+..
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC
Confidence 44568888999999999999999999999999998766 4445555578888888776 55899999999999999844
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCE
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHV 232 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~ 232 (451)
...-..+...+.++++++++.+| .+++.|+.|-.|++.+.........+. |..+|.++.|+|.+.+
T Consensus 86 -----------~~~~~iL~Rftlp~r~~~v~g~g--~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f 152 (933)
T KOG1274|consen 86 -----------GEEDTILARFTLPIRDLAVSGSG--KMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF 152 (933)
T ss_pred -----------CCccceeeeeeccceEEEEecCC--cEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCE
Confidence 22222344456789999999888 899999999999999999887777776 9999999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--C
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--A 309 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~ 309 (451)
||+.+-||.|++||+.++..........+...+. ....+..++|+| +..|+..+.|+.|++|+..++.....++. +
T Consensus 153 LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ 231 (933)
T KOG1274|consen 153 LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS 231 (933)
T ss_pred EEEEecCceEEEEEcccchhhhhcccCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc
Confidence 9999999999999999875432211111111111 145677899999 88899999999999999999998887763 3
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
...++.+.|+|.|+|||+++.||.|.|||+++...
T Consensus 232 ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 232 SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 44599999999999999999999999999996433
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=191.17 Aligned_cols=277 Identities=18% Similarity=0.219 Sum_probs=208.3
Q ss_pred EeeccCcccCCCCCC--ccEEEEECCCCceeeeecC----CCCeeEEEECC-------CCcEEEEeccCCCEEEEEcCCC
Q 012996 46 FLASSQLREQPSASS--GSILYWSWSKPQVEVKSLP----AEPIKPIAANS-------HGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~----~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
.-|+.++++++-..+ ..+.+|=.+.........| .....|+.|.. -|+|+|.|+.|..|.|||+.--
T Consensus 133 V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~ 212 (463)
T KOG0270|consen 133 VKPSDNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV 212 (463)
T ss_pred eccCCcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc
Confidence 446566666654432 3455554443332222222 45557888743 3689999999999999998421
Q ss_pred cc---ee------------------eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 113 RL---LK------------------KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 113 ~~---~~------------------~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
.. .. ...+|...|..+.|.. ..+.|++||.|.+|++||+.+ ..+..+
T Consensus 213 d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-----------g~p~~s 281 (463)
T KOG0270|consen 213 DAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-----------GKPKSS 281 (463)
T ss_pred cccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC-----------CCccee
Confidence 10 00 1236888999999987 456799999999999999954 556777
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-CceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 248 (451)
+..|...|.++.|++... .+|++|+.|++|.+.|.+. ...-..+...+.|..++|.| ....+++++.||.++-+|++
T Consensus 282 ~~~~~k~Vq~l~wh~~~p-~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R 360 (463)
T KOG0270|consen 282 ITHHGKKVQTLEWHPYEP-SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR 360 (463)
T ss_pred hhhcCCceeEEEecCCCc-eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecC
Confidence 788999999999998765 8999999999999999994 34445566889999999999 45678888999999999999
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce--EEEeecCCCCeeEEEEEecCc-
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPL- 323 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~- 323 (451)
... +++.+++.|..+|.++++++ ..++++++.|+.|++|++....+ +..-...-+...|.++.|+-.
T Consensus 361 ~~~--------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~ 432 (463)
T KOG0270|consen 361 NPG--------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAF 432 (463)
T ss_pred CCC--------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcce
Confidence 975 77889999999999999999 88999999999999999864333 322222234567777777654
Q ss_pred eeeeccCCCCccccccCCC
Q 012996 324 YLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~~~~~ 342 (451)
.+|.|+..+.+++|++...
T Consensus 433 ~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 433 TLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred EEEecCccceEEEeecccC
Confidence 5577888888999998754
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=186.81 Aligned_cols=241 Identities=19% Similarity=0.300 Sum_probs=190.8
Q ss_pred CCCCeeEEEECCCC--cEEEEeccCCCEEEEEcCC----------------CcceeeeccccCCeeEEEEcc-CCcEEEE
Q 012996 79 PAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVAS----------------GRLLKKWHAHYRAVTCLVFSE-DGSFLIS 139 (451)
Q Consensus 79 ~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~s 139 (451)
|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+++.++.+|.+.=..++||| ....|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 55667777776644 5566668899999999842 256778889999999999999 2234888
Q ss_pred eeCCCcEEEeeCcchhhhhhhhccccc-ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---ceeeee
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHL-YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNI 215 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~ 215 (451)
|..-+.|++|...++ ... -...+.+|+..|..++|+|... ..|++|+.||+|+|||++.+ ..+..-
T Consensus 230 GDc~~~I~lw~~~~g---------~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTG---------SWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred CccccceEeeeeccC---------ceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEee
Confidence 888889999998662 111 2344677999999999999876 79999999999999999998 455555
Q ss_pred ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEE
Q 012996 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVR 293 (451)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~ 293 (451)
.|++.|+.+.|+....+|++|+.||.++|||++..+.. .++..+..|..+|+++.|+| ...|++++.|.+|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 59999999999998889999999999999999987643 67889999999999999999 78999999999999
Q ss_pred EEeCCCCc----------------eEEEeecCC--CCeeEEEEEec-CceeeeccCCCCcc
Q 012996 294 VWDPITHN----------------IVRMFRLAK--GPVNNILVVRR-PLYLNLGSFSNPHT 335 (451)
Q Consensus 294 iwd~~~~~----------------~~~~~~~~~--~~v~~l~~s~~-~~~l~~~s~d~~i~ 335 (451)
+||+..-. +-+.+..|. ..+..+.|++. ..+|++.+.||.-.
T Consensus 374 iWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 374 IWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred EEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 99975311 111223443 36888999984 35778888887543
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-24 Score=192.21 Aligned_cols=278 Identities=19% Similarity=0.241 Sum_probs=219.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~ 81 (451)
..||.+. .||.|.+|++..+=.... ..+.+..+.|..++ |++ +..|++.+.+ |.|.-||+.+.+...... ..+
T Consensus 38 ~~lAvsR-t~g~IEiwN~~~~w~~~~-vi~g~~drsIE~L~--W~e-~~RLFS~g~s-g~i~EwDl~~lk~~~~~d~~gg 111 (691)
T KOG2048|consen 38 NQLAVSR-TDGNIEIWNLSNNWFLEP-VIHGPEDRSIESLA--WAE-GGRLFSSGLS-GSITEWDLHTLKQKYNIDSNGG 111 (691)
T ss_pred Cceeeec-cCCcEEEEccCCCceeeE-EEecCCCCceeeEE--Ecc-CCeEEeecCC-ceEEEEecccCceeEEecCCCc
Confidence 3588999 999999999986543322 23445668888898 984 5556677777 999999999888776644 578
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.|.+++.+|.+..++.|+.||.++.++...+.... .+....+.|.++.|+|++..+++|+.||.|++||+..+...-.
T Consensus 112 ~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~ 191 (691)
T KOG2048|consen 112 AIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHI 191 (691)
T ss_pred ceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEE
Confidence 99999999999999999999988888877775543 3455568999999999999999999999999999966321110
Q ss_pred hhcccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996 160 SQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (451)
... .+..+.. ...-|+++.+-.+ ..|++|...|+|.+||...+..++.+. |...|.+++..++++++++++
T Consensus 192 ---~~~-~~d~l~k~~~~iVWSv~~Lrd---~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG 264 (691)
T KOG2048|consen 192 ---ITM-QLDRLSKREPTIVWSVLFLRD---STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG 264 (691)
T ss_pred ---eee-cccccccCCceEEEEEEEeec---CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc
Confidence 000 0111222 4456788888766 589999999999999999999999888 899999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~ 299 (451)
.|+.|..|...+.... +........|...|.+++..+ ..+++|+.|..+.+-....
T Consensus 265 vd~~ii~~~~~~~~~~-----wv~~~~r~~h~hdvrs~av~~-~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 265 VDPKIIQYSLTTNKSE-----WVINSRRDLHAHDVRSMAVIE-NALISGGRDFTLAICSSRE 320 (691)
T ss_pred CCCceEEEEecCCccc-----eeeeccccCCcccceeeeeec-ceEEecceeeEEEEccccc
Confidence 9999999988776431 334455667999999999984 6999999999998876554
No 144
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3e-24 Score=174.19 Aligned_cols=276 Identities=16% Similarity=0.206 Sum_probs=200.0
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-----ecCCCCeeEEEECC--CCcEEEEeccCCCEEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAANS--HGTYIAGGGQSGDIYM 106 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 106 (451)
+|..-|.++. |.+.|+.+|+++.| ++|+|||.+...-... ..|.+.|..+.|.+ -|+.+|+++.|+++.|
T Consensus 11 ~h~DlihdVs--~D~~GRRmAtCSsD-q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVS--FDFYGRRMATCSSD-QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeee--ecccCceeeeccCC-CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 4667788888 99999999999999 9999999764442221 34889999999954 5899999999999999
Q ss_pred EEcCCC---------cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee------
Q 012996 107 WEVASG---------RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH------ 169 (451)
Q Consensus 107 wd~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------ 169 (451)
|.-... ....++....+.|++++|.| -|-.|++++.||.++||+.-..... ......+
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL-----s~W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL-----SQWTLQHEIQNVI 162 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc-----ccchhhhhhhhcc
Confidence 985211 22345666788999999999 5778999999999999998542211 1122222
Q ss_pred -cccCCcCceeEEEEeecCC-eeEEEEeeCC-----CcEEEEEcCCCc-e---eeeee-cccceeEEEECCC----CCEE
Q 012996 170 -SFTGHTLRITDIVIGYGGV-SATIVSASED-----RTCKVWSLLKGR-L---LRNIV-FPSVIDAIALDPA----EHVF 233 (451)
Q Consensus 170 -~~~~~~~~i~~i~~~~~~~-~~~l~s~~~d-----~~i~iwd~~~~~-~---~~~~~-~~~~i~~~~~~~~----~~~l 233 (451)
....+..+..|+.|++..- ..+|+.|+.+ +.++||....+. . +.++. +..+|+.++|.|+ -..|
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeE
Confidence 2235667778888886432 2567777665 479999876543 2 22333 7899999999995 3579
Q ss_pred EEEeCCCcEEEEEccCCC-----------CCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--
Q 012996 234 YAGSRDGSIYIAALNAES-----------PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-- 299 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-- 299 (451)
++++.|| |+||.+.... ........+.+..+.+|.+.|..+.|+- |..|++.|.||.|++|...-
T Consensus 243 AvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 243 AVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhh
Confidence 9999999 9999998421 1112234466778899999999999999 99999999999999998542
Q ss_pred -CceEEEeecCCCCeeEEEEE
Q 012996 300 -HNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 300 -~~~~~~~~~~~~~v~~l~~s 319 (451)
.+++..++. .+.++...|+
T Consensus 322 ~~kC~sv~~~-e~~~~~~~~~ 341 (361)
T KOG2445|consen 322 LWKCTSVLKA-EGSVTKPDFS 341 (361)
T ss_pred hheeeeEEec-cCCCCCcccc
Confidence 345555544 2334444443
No 145
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.6e-25 Score=195.68 Aligned_cols=279 Identities=17% Similarity=0.187 Sum_probs=222.1
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCc--EEEEeccCCCEEEEEcCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT--YIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~ 111 (451)
+|.+.|.++. ..|.|.+|++|+.| |+|+||.+.++.+.......+.|.||+|+|.+. .||++-.. .+.|.+..-
T Consensus 398 GHtg~Vr~iS--vdp~G~wlasGsdD-GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~ 473 (733)
T KOG0650|consen 398 GHTGLVRSIS--VDPSGEWLASGSDD-GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIF 473 (733)
T ss_pred ccCCeEEEEE--ecCCcceeeecCCC-CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecC-ceEEeCccc
Confidence 4556777887 88999999999998 999999999999998888889999999999765 34443332 344443321
Q ss_pred C-------------------------------------cceeeeccccCCeeEEEEccCCcEEEEeeCC---CcEEEeeC
Q 012996 112 G-------------------------------------RLLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSL 151 (451)
Q Consensus 112 ~-------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~ 151 (451)
| .-++..-.|...|..+.|+..|.||++...+ ..|.|+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0012233578899999999999999987664 46899998
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAE 230 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~ 230 (451)
.. ......|....+.|.++.|+|.. .+|++++. ..|+|||+..+..+..+. ....|..++++|.|
T Consensus 554 SK-----------~~sQ~PF~kskG~vq~v~FHPs~--p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 554 SK-----------RKSQSPFRKSKGLVQRVKFHPSK--PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cc-----------ccccCchhhcCCceeEEEecCCC--ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 54 22234455567788999999987 56666654 579999998877776665 45678999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC------C---C
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI------T---H 300 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~------~---~ 300 (451)
..|++|+.|+.+..||+.-.. ++..++..|...+++++|++ -.+|++|+.||++.|+.-. . -
T Consensus 620 Dnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpli 691 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLI 691 (733)
T ss_pred CeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCce
Confidence 999999999999999998865 67788999999999999999 8999999999999998532 1 1
Q ss_pred ceEEEeecCCCC----eeEEEEEecCceeeeccCCCCccccc
Q 012996 301 NIVRMFRLAKGP----VNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 301 ~~~~~~~~~~~~----v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
-+++.+++|... |.++.|+|....|++++.||+|++|.
T Consensus 692 VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 692 VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 356778888654 88999999999999999999999984
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=195.92 Aligned_cols=285 Identities=16% Similarity=0.166 Sum_probs=208.2
Q ss_pred ccCcccCCCCCCccEEEEECCCCcee-------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee--ec
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK--WH 119 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~ 119 (451)
....++..+.++|.|.++|....... .-..|...|..+.|.|....|++++.|.++++||++.+++... +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 33444444444599999998754433 2234889999999999778899999999999999999998876 88
Q ss_pred cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh----------------hhcccccceecccCCcCceeE--
Q 012996 120 AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE----------------SQRASHLYLHSFTGHTLRITD-- 180 (451)
Q Consensus 120 ~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~-- 180 (451)
+|.+.|.+++|.| +...|++|+.||.|.|||++-...... ........+.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 9999999999999 566789999999999999975331100 000011112333445555555
Q ss_pred -EEEeecCCeeEEEEeeC-CCcEEEEEcCCCceeeeee---------c---ccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996 181 -IVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIV---------F---PSVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (451)
Q Consensus 181 -i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~---------~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (451)
+.+..+. ..|++++. |+.|++||+++........ + ...+.++..+..|.+|++.+.|+.|++|+
T Consensus 222 Tvv~fkDe--~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 222 TVVLFKDE--STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred EEEEEecc--ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 4444555 68888887 9999999998764332221 1 24578888999999999999999999999
Q ss_pred ccCCCCCCCCCCceeeeeeccCCcce--eEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCeeEEEEEecC
Q 012996 247 LNAESPSTSSYGMHIIGSLSDHSKAV--TCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~l~~s~~~ 322 (451)
+..... .++..+.++...- ..-..+| +.++++|+.|....+|.+.+.+ ....+.+|.-.|++++|.|..
T Consensus 300 m~s~s~-------sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 300 MRSLSI-------SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred ccccCc-------CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 988653 3344444443211 1123467 9999999999999999998754 455677999999999999833
Q ss_pred -ceeeeccCCCCccccccCCC
Q 012996 323 -LYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 323 -~~l~~~s~d~~i~iw~~~~~ 342 (451)
.-+++++.|..+++|++..+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CCCceeeccCcceEEEeccCc
Confidence 45677799999999998644
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.3e-24 Score=192.77 Aligned_cols=328 Identities=15% Similarity=0.217 Sum_probs=245.6
Q ss_pred EEeecCCCCCCeEEEECcc--CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeee
Q 012996 4 LIASSSVADTGIGCWDLES--GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~ 77 (451)
.|.+++ .|.++.+|...+ |--+...+...-.....-+.+..|+|++..+++-+.. |..++|...... .....
T Consensus 281 ~LLSAS-aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~-Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSAS-ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT-GGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecc-cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc-CcEEEEeccCccceeeccccc
Confidence 577888 999999998654 3344333332222122223333499999999888888 999999943322 23445
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.|.+.|+.++|+|.|.+|++.+.|.+-+++-.-.. ..+..-+-|.-.++|++|-+....|++|.....+++|+...
T Consensus 359 GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 359 GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 68899999999999999999999999999864311 22334467888999999998667799999999999998743
Q ss_pred hhhhh-------------h-----------------h--h---------------------------------cccccce
Q 012996 154 VFEEC-------------E-----------------S--Q---------------------------------RASHLYL 168 (451)
Q Consensus 154 ~~~~~-------------~-----------------~--~---------------------------------~~~~~~~ 168 (451)
..... . . . ..-.+.+
T Consensus 439 ~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv 518 (764)
T KOG1063|consen 439 SFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEV 518 (764)
T ss_pred HHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhh
Confidence 21000 0 0 0 0011223
Q ss_pred ecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996 169 HSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (451)
Q Consensus 169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (451)
+.+.+|...|++++.+|++ +++++++... .|++|+..+-.....+. |.-.|+.++|+|++++|++.+.|.++
T Consensus 519 ~KLYGHGyEv~~l~~s~~g--nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~ 596 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG--NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV 596 (764)
T ss_pred HHhccCceeEEEEEecCCC--CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence 5678999999999999998 8999988754 58999998887777666 88899999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC--ceEEE--eecCCCCeeEEE
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH--NIVRM--FRLAKGPVNNIL 317 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~--~~~~~--~~~~~~~v~~l~ 317 (451)
.+|......... ......+.|+.-|.+..|+| +.+|+|+|.|.+|++|..... +.+.. ...+..+|+.++
T Consensus 597 sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~ 671 (764)
T KOG1063|consen 597 SLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVA 671 (764)
T ss_pred Eeeeeecccchh-----hhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEE
Confidence 999985543111 11233778999999999999 889999999999999998877 44443 224678999999
Q ss_pred EEe-c----CceeeeccCCCCccccccC
Q 012996 318 VVR-R----PLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 318 ~s~-~----~~~l~~~s~d~~i~iw~~~ 340 (451)
|.| + +..++.|-..|.|.+|+..
T Consensus 672 ~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 672 YLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eeccccccccceEEEEecccEEEEEecc
Confidence 987 2 2267888899999999966
No 148
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1.9e-24 Score=176.56 Aligned_cols=273 Identities=18% Similarity=0.238 Sum_probs=213.1
Q ss_pred eEeeccCcccCCCCCCccEEEEECCCCc--------------eeeeecCCCCeeEEEEC-------CCCcEEEEeccCCC
Q 012996 45 RFLASSQLREQPSASSGSILYWSWSKPQ--------------VEVKSLPAEPIKPIAAN-------SHGTYIAGGGQSGD 103 (451)
Q Consensus 45 ~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------------~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~ 103 (451)
+|+|||..+++-+.| ..+++|++.... ...+....+.|...+|- |+.+++|+.+.+.-
T Consensus 56 kWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 56 KWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred eeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 499999999999998 999999974211 12333346677777773 67889999999999
Q ss_pred EEEEEcCCCcceeeecc--ccC---CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 104 IYMWEVASGRLLKKWHA--HYR---AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
|.+||..+|++...+.+ |.. ...+++|+|||.+|++|. ...|+++|+......+. ......+.-.+..+-|
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~---vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCP---VYTTVTKGKFGQKGII 210 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCc---chhhhhccccccccee
Confidence 99999999998877753 333 346899999999998875 46999999943211110 0001111123447788
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCC
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSS 256 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~ 256 (451)
.+++|+|... ..++.++...++-||.-..+.++..+. |.+.|+.++|.++|+.|++|.. +..|..||++...
T Consensus 211 sc~a~sP~~~-~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----- 284 (406)
T KOG2919|consen 211 SCFAFSPMDS-KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----- 284 (406)
T ss_pred eeeeccCCCC-cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-----
Confidence 9999999764 689999999999999888888887776 8899999999999999999975 6689999999865
Q ss_pred CCceeeeeeccCCc-ceeEEEE--ec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996 257 YGMHIIGSLSDHSK-AVTCLAY--ST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 257 ~~~~~~~~~~~~~~-~v~~~~~--~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d 331 (451)
.++..+..|.. .-..|.| .| +++|++|+.||.|++||+.+ +..+..+..|...++.++++|--..+|+++..
T Consensus 285 ---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 285 ---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 55667777766 3334444 46 99999999999999999998 77788888999999999999998888888643
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=6.3e-25 Score=189.11 Aligned_cols=255 Identities=17% Similarity=0.272 Sum_probs=203.7
Q ss_pred EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeec
Q 012996 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSL 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~ 78 (451)
+.+|+.+ .|..|++|.- .|+ ....-+... ..-.|++ ......+++++|.. +.|+|||+....+. ....
T Consensus 48 lvvas~~-gdk~~~~~~K-~g~~~~Vp~~~k~~g---d~~~Cv~--~~s~S~y~~sgG~~-~~Vkiwdl~~kl~hr~lkd 119 (673)
T KOG4378|consen 48 LVVASMA-GDKVMRIKEK-DGKTPEVPRVRKLTG---DNAFCVA--CASQSLYEISGGQS-GCVKIWDLRAKLIHRFLKD 119 (673)
T ss_pred EEEeecC-CceeEEEecc-cCCCCccceeecccc---chHHHHh--hhhcceeeeccCcC-ceeeehhhHHHHHhhhccC
Confidence 4556666 8999999973 333 222212111 1333444 33445889999998 99999999854443 2345
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~ 156 (451)
|...|+++.++-...|||+++..|.|.|..+.++..-..|... ...|.-+.|+|..++ |.+++.+|.|.+||+..
T Consensus 120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g--- 196 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG--- 196 (673)
T ss_pred CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC---
Confidence 8899999999999999999999999999999998877777644 455668999996554 66889999999999943
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (451)
..+...-...|..+..+|+|+|... .+|++.+.|..|.+||++..+....+....+...++|.++|.+|++|
T Consensus 197 -------~sp~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 197 -------MSPIFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAG 268 (673)
T ss_pred -------CCcccchhhhccCCcCcceecCCcc-ceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEee
Confidence 2334445678999999999999875 78999999999999999999988888889999999999999999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEE
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 284 (451)
+..|.|+.||++..+ .++.....|...|++++|-|...++
T Consensus 269 ~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred cCCceEEEEecccCC--------CCceEeeecccceeEEEeeecceee
Confidence 999999999999876 7788999999999999998733433
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=175.76 Aligned_cols=272 Identities=17% Similarity=0.232 Sum_probs=201.5
Q ss_pred EEEeecCCCCCCeEEEECccCcee--eeee--cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---ee-
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQ--LRYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VE- 74 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~- 74 (451)
-.|||++ .|++|+||++..-... +.++ ....|+..| . |.||.+.+++....+.++++|...+.. ..
T Consensus 99 K~lat~~-~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V---~--FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~ 172 (420)
T KOG2096|consen 99 KKLATIS-GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRV---V--FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH 172 (420)
T ss_pred ceeEEEe-CCceEEEEecchhhhhhhhHhhccccCCCceEE---E--ECCCcceEEEEEccCCEEEEEEeeecccCCCCc
Confidence 4689999 9999999998753221 1111 111244444 4 999999988887776899999875322 11
Q ss_pred ---------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc
Q 012996 75 ---------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145 (451)
Q Consensus 75 ---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 145 (451)
+...|.-.+..+-...++.+|++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++..-.
T Consensus 173 ~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD 251 (420)
T KOG2096|consen 173 HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD 251 (420)
T ss_pred ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCC
Confidence 122245567777788889999999999999999998 9999988877777788899999999999999999
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------Cceeeeee--
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIV-- 216 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~-- 216 (451)
|++|.+--.... .......+..+.+|...|..++|+++. ..+++.+.||++++||..- .+.+....
T Consensus 252 VkVwE~~f~kdG---~fqev~rvf~LkGH~saV~~~aFsn~S--~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 252 VKVWEPIFTKDG---TFQEVKRVFSLKGHQSAVLAAAFSNSS--TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred ceEEEEEeccCc---chhhhhhhheeccchhheeeeeeCCCc--ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 999987321110 012233466789999999999999998 8999999999999999752 12222221
Q ss_pred ---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996 217 ---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (451)
Q Consensus 217 ---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i 292 (451)
..+....+.++|+|+.|+++. ...+.+|..+.++. .-..-..|...|.+++|++ |+++++++ |..+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~--------~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~v 396 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD--------YPELEDIHSTTISSISYSSDGKYIATCG-DRYV 396 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc--------chhHHHhhcCceeeEEecCCCcEEeeec-ceee
Confidence 123455899999999998765 45788998887642 1222345899999999999 99999987 6677
Q ss_pred EEEe
Q 012996 293 RVWD 296 (451)
Q Consensus 293 ~iwd 296 (451)
+++.
T Consensus 397 rv~~ 400 (420)
T KOG2096|consen 397 RVIR 400 (420)
T ss_pred eeec
Confidence 7775
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=182.74 Aligned_cols=289 Identities=14% Similarity=0.166 Sum_probs=214.8
Q ss_pred CCCceEEecceEeeccC-cccCCCCCCccEEEEECCCC-----ceeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEE
Q 012996 35 PPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKP-----QVEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMW 107 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 107 (451)
+.+.|++++ |+|... .++++|...|.|-+||+.+. .......|..+|.+|.|+| +...+++.+.||+|++-
T Consensus 185 ~~~Rit~l~--fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 185 TDRRITSLA--FHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred cccceEEEE--ecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 457899999 999876 44444444499999999522 2334456889999999999 45678888999999999
Q ss_pred EcCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 108 EVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 108 d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
|++.+.. +..+......+.++.|+.+...++.+..=|...+||+++. ......+.-|...|.+++++|
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~----------~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTD----------GSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecC----------CccchhhhhhhcccceeecCC
Confidence 9987743 3344435566778889888888888888889999999762 223445566888999999999
Q ss_pred cCCeeEEEEeeCCCcEEEEEcCCCc-----eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996 186 GGVSATIVSASEDRTCKVWSLLKGR-----LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH 260 (451)
Q Consensus 186 ~~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 260 (451)
-.. .+|+|++.|++++|||++.-. .+..+.|...|.+..|+|.+..|++.+.|..|++||..--... ..
T Consensus 333 ~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-----~~ 406 (498)
T KOG4328|consen 333 VCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-----DE 406 (498)
T ss_pred CCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc-----CC
Confidence 765 799999999999999998632 2556668999999999998888999999999999998411000 01
Q ss_pred eeeeec---cCC--cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeE-EEEEecCceeee-ccCC
Q 012996 261 IIGSLS---DHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNN-ILVVRRPLYLNL-GSFS 331 (451)
Q Consensus 261 ~~~~~~---~~~--~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~-l~~s~~~~~l~~-~s~d 331 (451)
+..++. .+. -......|.| ..++++|-.-..|-|+|-..++.+..+..... .|.+ ..|+|-+..+++ ++..
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 111221 111 1234568999 89999999999999999998888887654433 4555 479998874555 5566
Q ss_pred CCccccccCC
Q 012996 332 NPHTSSRRHG 341 (451)
Q Consensus 332 ~~i~iw~~~~ 341 (451)
|.|.+|.-++
T Consensus 487 Gki~vft~k~ 496 (498)
T KOG4328|consen 487 GKIYVFTNKK 496 (498)
T ss_pred ceEEEEecCC
Confidence 7888887553
No 152
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=176.57 Aligned_cols=280 Identities=20% Similarity=0.274 Sum_probs=203.0
Q ss_pred CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee----
Q 012996 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---- 76 (451)
Q Consensus 1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---- 76 (451)
+|..+|++- ..|+|++||..+|+.+..++++..+.+.+..+... ....+.+++.| |+|++||++......+
T Consensus 39 ~e~~vav~l-Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~d---s~h~v~s~ssD-G~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 39 FETAVAVSL-SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCD---SPHGVISCSSD-GTVRLWDIRSQAESARISWT 113 (376)
T ss_pred cceeEEEEe-cCCeEEEEeccchhhhheecCCCCcccceEEecCC---CCCeeEEeccC-CeEEEEEeecchhhhheecc
Confidence 467888988 89999999999999999999888887777754411 44556677777 9999999986543322
Q ss_pred ecCCCCeeEEEECCCCcEEEEecc----CCCEEEEEcCCCcc-eeee-ccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASGRL-LKKW-HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW 149 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw 149 (451)
..+..+..|++....++.+++|.. +..|.+||++..+. +..+ ..|...|++++|+| +.++|++|+.||.|.+|
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlf 193 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLF 193 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEee
Confidence 223457788888878888998853 56799999998866 5544 68999999999999 77899999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc----------
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS---------- 219 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------- 219 (451)
|+... .....+...-.|...|..+.|...+. ..|.+-+..++..+|++..+.....+..+.
T Consensus 194 D~~~d--------~EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~ 264 (376)
T KOG1188|consen 194 DTKKD--------NEEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKED 264 (376)
T ss_pred ecCCC--------cchhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhh
Confidence 99653 12223344455888899999988765 568999999999999999887655544221
Q ss_pred -ceeEE-EECC-CCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996 220 -VIDAI-ALDP-AEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVR 293 (451)
Q Consensus 220 -~i~~~-~~~~-~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~ 293 (451)
.-+-+ +.+| +...+++++. -|...++-+....... ....+..+.+ |..-|+++.|.. +.++.|||.||.+.
T Consensus 265 ~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~---~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~ 341 (376)
T KOG1188|consen 265 NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS---LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ 341 (376)
T ss_pred hhhheeecccCCCcceEEEeccccCceeEEEeeeccccc---ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence 00111 1223 4455555544 5666666554321110 1133445555 777888999988 99999999999999
Q ss_pred EEeC
Q 012996 294 VWDP 297 (451)
Q Consensus 294 iwd~ 297 (451)
+|..
T Consensus 342 ~Wk~ 345 (376)
T KOG1188|consen 342 AWKV 345 (376)
T ss_pred EEec
Confidence 9986
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-24 Score=183.28 Aligned_cols=267 Identities=15% Similarity=0.287 Sum_probs=205.3
Q ss_pred EEeecCCCCCCeEEEECcc--CceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeeec--
Q 012996 4 LIASSSVADTGIGCWDLES--GAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSL-- 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~-- 78 (451)
+|.+++ .||+++||.+.. ...+..+.. ...+|.+.. |.|+|. .+++++.. ..++.||+.+.+......
T Consensus 227 lllvaG-~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~a~--f~p~G~~~i~~s~rr-ky~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 227 LLLVAG-LDGTLRIFQVDGKVNPKLQSIHL---EKFPIQKAE--FAPNGHSVIFTSGRR-KYLYSYDLETAKVTKLKPPY 299 (514)
T ss_pred eEEEec-CCCcEEEEEecCccChhheeeee---ccCccceee--ecCCCceEEEecccc-eEEEEeeccccccccccCCC
Confidence 567788 899999999762 223333332 335566777 999999 78888887 999999998877653332
Q ss_pred --CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996 79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 79 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 156 (451)
....+.....+|++++|+..+..|.|.+....+++.+.+++ -.+.|..++|+.|++.|++++.+|.|.+||+++
T Consensus 300 g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~--- 375 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ--- 375 (514)
T ss_pred CcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC---
Confidence 23467788889999999999999999999999999999886 567899999999999999999999999999965
Q ss_pred hhhhhcccccceecccCCcCce--eEEEEeecCCeeEEEEeeCCCcEEEEEcCC------Cceeeeee-cccceeEEEEC
Q 012996 157 ECESQRASHLYLHSFTGHTLRI--TDIVIGYGGVSATIVSASEDRTCKVWSLLK------GRLLRNIV-FPSVIDAIALD 227 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i--~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~-~~~~i~~~~~~ 227 (451)
..+++.+.. .+.| ++++.+.++ .++++|+..|.|.|||..+ .+++..+. ....|+++.|+
T Consensus 376 --------~~~~~rf~D-~G~v~gts~~~S~ng--~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 376 --------NSCLHRFVD-DGSVHGTSLCISLNG--SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred --------cceEEEEee-cCccceeeeeecCCC--ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 345555543 2333 456666777 8999999999999999653 34444444 67789999999
Q ss_pred CCCCEEEEEeC--CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 228 PAEHVFYAGSR--DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 228 ~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|+..+|+.++. +..+++..+.+...... +. .....-+.|+||+||| +.+|+.|..+|.+.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsN---fP---~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSN---FP---TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeecc---CC---CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99999998875 55788887766431111 11 1122346799999999 9999999999999999864
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.8e-24 Score=174.19 Aligned_cols=243 Identities=17% Similarity=0.222 Sum_probs=185.2
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++||+||+.|+|++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~--------- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK--------- 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC---------
Confidence 78999999999999999999999999999998899999999999999999999999999999999999955
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------cccceeEEEECCCCCEEEEE
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~ 236 (451)
..+++.+. ...+|+...|+|...+..+++ -.+..-.+.++..+.. ..+. .+....+..|++.|+++++|
T Consensus 97 --gs~l~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitG 171 (405)
T KOG1273|consen 97 --GSPLKRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITG 171 (405)
T ss_pred --CCceeEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEe
Confidence 33444444 567899999999876444444 3444455555554221 1111 12233345689999999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------ce--EEE
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------NI--VRM 305 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~~--~~~ 305 (451)
...|.+.+||..+. +++..++-.. ..|..+.++. |++|+.-+.|..||.|++..- ++ .+.
T Consensus 172 tsKGkllv~~a~t~---------e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K 242 (405)
T KOG1273|consen 172 TSKGKLLVYDAETL---------ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHK 242 (405)
T ss_pred cCcceEEEEecchh---------eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHH
Confidence 99999999999886 4455554444 7889999999 999999999999999997621 11 111
Q ss_pred ee--cCCCCeeEEEEEecCceeeeccCC-CCccccccCCCCCCCcc
Q 012996 306 FR--LAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 306 ~~--~~~~~v~~l~~s~~~~~l~~~s~d-~~i~iw~~~~~~~~~~~ 348 (451)
+. ....+-.+++||.+|.|++.++.. ..++||....+.+...+
T Consensus 243 ~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKIL 288 (405)
T KOG1273|consen 243 LQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKIL 288 (405)
T ss_pred HHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeee
Confidence 11 123356788999999999877744 56999998877665443
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=179.51 Aligned_cols=215 Identities=21% Similarity=0.286 Sum_probs=174.4
Q ss_pred ccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhh-----hhhcccccceecccCCcCceeEEEEeecCCeeE
Q 012996 119 HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEEC-----ESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT 191 (451)
Q Consensus 119 ~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 191 (451)
..|.+.++.+..++ +..+.++-+..|.|.||++....... ........++.++.+|...=++++|+|... ..
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~-g~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT-GR 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-cc
Confidence 46788888888776 44566777889999999996543221 122245667889999999999999999543 46
Q ss_pred EEEeeCCCcEEEEEcCCCceeee----eecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRN----IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
+++|..-+.|++|...++.-... ..|...|..++|+| ....|++|+-||.|+|||++.... ......+
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~-------~~~~~~k 299 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK-------KAAVSTK 299 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc-------cceeEee
Confidence 88999999999999988754321 22888999999999 457889999999999999998742 2233348
Q ss_pred cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC---CceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCC
Q 012996 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT---HNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.|.+.|+.|.|+. ..+||+|+.||+++|||++. ++++.+|+.|.++|++|.|+| +...|++++.|..|.+||+.-
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 8999999999999 66999999999999999875 678999999999999999998 456789999999999999764
No 156
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=8.7e-24 Score=186.13 Aligned_cols=272 Identities=16% Similarity=0.243 Sum_probs=209.5
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCccc--CCCCC---------------------
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE--QPSAS--------------------- 59 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~~~~d--------------------- 59 (451)
..||+|+ .||+|+||.+.||.+++++... ..|.|++ |.|.+..-+ ++...
T Consensus 413 ~wlasGs-dDGtvriWEi~TgRcvr~~~~d----~~I~~va--w~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~el 485 (733)
T KOG0650|consen 413 EWLASGS-DDGTVRIWEIATGRCVRTVQFD----SEIRSVA--WNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKEL 485 (733)
T ss_pred ceeeecC-CCCcEEEEEeecceEEEEEeec----ceeEEEE--ecCCCCceeEEEEecCceEEeCccccchhhhcchhhh
Confidence 4689999 9999999999999999988633 4677777 877665422 22221
Q ss_pred ----------CccEEEEECCC---C--ceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccc
Q 012996 60 ----------SGSILYWSWSK---P--QVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAH 121 (451)
Q Consensus 60 ----------~g~i~vw~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~ 121 (451)
++.+..|.-.. . .+.....|...|..+.|+..|.||++...+ ..|.|+++.......-|+..
T Consensus 486 l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks 565 (733)
T KOG0650|consen 486 LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS 565 (733)
T ss_pred hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc
Confidence 12333443221 1 122445578899999999999999987654 45999999888777777777
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
.+.|.++.|+|...+|++++.. .|++||+. ....+..+......|..+++++.| ..|+.|+.|+.+
T Consensus 566 kG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~-----------kqelvKkL~tg~kwiS~msihp~G--Dnli~gs~d~k~ 631 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVATQR-SVRIYDLS-----------KQELVKKLLTGSKWISSMSIHPNG--DNLILGSYDKKM 631 (733)
T ss_pred CCceeEEEecCCCceEEEEecc-ceEEEehh-----------HHHHHHHHhcCCeeeeeeeecCCC--CeEEEecCCCee
Confidence 7889999999998899988875 89999993 355566666677789999999998 789999999999
Q ss_pred EEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc----eeEE
Q 012996 202 KVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA----VTCL 275 (451)
Q Consensus 202 ~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~ 275 (451)
..+|+.-. ++.+.+. |...+++++|++.-.+|++|+.||.+.+|--.--.-.....-.-++..+.+|... |..+
T Consensus 632 ~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 632 CWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 99999754 4555555 8889999999999999999999999998853321111111223567788898766 8899
Q ss_pred EEec-CCEEEEEcCCCcEEEE
Q 012996 276 AYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 276 ~~~~-~~~l~s~~~dg~i~iw 295 (451)
.|+| ..+|++++.||+|++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 9999 9999999999999998
No 157
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.6e-24 Score=181.45 Aligned_cols=236 Identities=17% Similarity=0.262 Sum_probs=185.4
Q ss_pred ccCcccCCCCCCccEEEEECCCCc-----eee-----------------eecCCCCeeEEEECCC-CcEEEEeccCCCEE
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQ-----VEV-----------------KSLPAEPIKPIAANSH-GTYIAGGGQSGDIY 105 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~-----~~~-----------------~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 105 (451)
.|+++|.|..+ ..|.|||+.-.. ..+ ...|.+.|.+++|+.+ .+.||+|+.|.+|+
T Consensus 191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 47899999998 899999986211 110 1136778889999874 56789999999999
Q ss_pred EEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 106 MWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
+||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+... . ....-...+.|-.++|.
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------~---s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------N---SGKEWKFDGEVEKVAWD 338 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------c---cCceEEeccceEEEEec
Confidence 999999999999999999999999999 67889999999999999997411 0 11111245678889999
Q ss_pred ecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996 185 YGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (451)
Q Consensus 185 ~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (451)
+... ..+++++.||+|+-+|+|.. +++.++. |...|.++++++ ...++++++.|+.+.+|++....+..
T Consensus 339 ~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~------- 410 (463)
T KOG0270|consen 339 PHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS------- 410 (463)
T ss_pred CCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-------
Confidence 8765 67888899999999999986 7888887 999999999998 45678899999999999998765321
Q ss_pred eeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEE
Q 012996 262 IGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR 304 (451)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~ 304 (451)
+....---+...|.++.| ..+++.|+..+.++|||+.+...+.
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 111111123366777778 6788999999999999998776554
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=167.33 Aligned_cols=266 Identities=14% Similarity=0.167 Sum_probs=202.1
Q ss_pred ccEEEEECCCCcee----eeecCCCCeeEEEECCC-CcEEEEeccC-------CCEEEEEcCCC---------cceeeec
Q 012996 61 GSILYWSWSKPQVE----VKSLPAEPIKPIAANSH-GTYIAGGGQS-------GDIYMWEVASG---------RLLKKWH 119 (451)
Q Consensus 61 g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~ 119 (451)
+.|.+.+++...-. ....+.+.|..++-+|- .+.|+++..+ -.+.||.+... +++..+.
T Consensus 40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld 119 (370)
T KOG1007|consen 40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD 119 (370)
T ss_pred ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence 78888877654432 22346889999999994 5556665432 23789988532 3344443
Q ss_pred -cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996 120 -AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 120 -~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
.+-+.|.|+.|.|++..+++-. |..|.+|++........ ......-.++....++-+|+|..+++.+++. .|
T Consensus 120 teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~va-----ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d 192 (370)
T KOG1007|consen 120 TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVA-----EVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SD 192 (370)
T ss_pred HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhe-----eecccccccccceecccccCCCCccceEEEe-CC
Confidence 4567999999999999988876 77999999976332100 0111112235667788899996665676665 58
Q ss_pred CcEEEEEcCCCceeeeee--cccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996 199 RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 275 (451)
+++..||+++.+....+. |...+..+.|+|+.. +|++|+.||.|++||.+..+ .++..+.+|...|+++
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--------~pv~el~~HsHWvW~V 264 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--------FPVQELPGHSHWVWAV 264 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--------ccccccCCCceEEEEE
Confidence 899999999988888877 778899999999754 67889999999999999876 7788999999999999
Q ss_pred EEec--CCEEEEEcCCCcEEEEeCCCC-----------------------------ceEEEeecCCCCeeEEEEEe-cCc
Q 012996 276 AYST--GDLLISGSEDGMVRVWDPITH-----------------------------NIVRMFRLAKGPVNNILVVR-RPL 323 (451)
Q Consensus 276 ~~~~--~~~l~s~~~dg~i~iwd~~~~-----------------------------~~~~~~~~~~~~v~~l~~s~-~~~ 323 (451)
.|+| ..++++||.|..|.+|...+- ..+.++..|...|.+++||. |.-
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 9999 889999999999999964321 12456778999999999997 666
Q ss_pred eeeeccCCCCccccccCC
Q 012996 324 YLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~~~~ 341 (451)
.||+-|+||.+.|-++..
T Consensus 345 iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 345 IFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccCceEEeecCCh
Confidence 779999999999887653
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.91 E-value=3.7e-23 Score=176.54 Aligned_cols=252 Identities=17% Similarity=0.222 Sum_probs=196.0
Q ss_pred ecCCCCeeEEEECCCC--cEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996 77 SLPAEPIKPIAANSHG--TYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW 149 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw 149 (451)
..+.++|++++|+|.. +++|+|...|.|-+||+.+. .-+..+..|.++|.++.|+| +...+++.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 3467899999999954 58899999999999999532 34567789999999999999 66789999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEEC
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALD 227 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~ 227 (451)
|++.. ....+.....-.....++.|+.+. ..++.+..=|...+||.+++.. ...+. |...|.+++++
T Consensus 263 D~~~~---------i~e~v~s~~~d~~~fs~~d~~~e~--~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 263 DFEGN---------ISEEVLSLDTDNIWFSSLDFSAES--RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eecch---------hhHHHhhcCccceeeeeccccCCC--ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 99662 122233333344566677777766 5677777777999999998754 44444 67799999999
Q ss_pred C-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC----CCCc
Q 012996 228 P-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP----ITHN 301 (451)
Q Consensus 228 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~----~~~~ 301 (451)
| ...+|++++.|++.+|||++....... ++-....|...|.+..||| +..|+|.+.|..|+|||. ....
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC
Confidence 9 556789999999999999998653322 2344557999999999999 666999999999999998 3445
Q ss_pred eEEEeecCCC-----CeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 302 IVRMFRLAKG-----PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 302 ~~~~~~~~~~-----~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
++.++.+... ......|.|+-.++++|-.-..|-|++-.+++.
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 5666653222 345568999999999999999999999888763
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=6.1e-23 Score=172.75 Aligned_cols=284 Identities=18% Similarity=0.260 Sum_probs=210.6
Q ss_pred CceEEecceEeeccC-cccCCCCCCccEEEEECCCCc-------ee---eeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996 37 HGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQ-------VE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~-------~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 105 (451)
..+..+. |.+++. .+|++|.| ..|++|-++... +. ....|...|+++.|+|+|..||+|+.+|.|.
T Consensus 14 ~pv~s~d--fq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVD--FQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CceEEEE--eccCcccceecccCc-cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 4455666 777766 89999999 999999876332 11 2245889999999999999999999999999
Q ss_pred EEEcC--------C--------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996 106 MWEVA--------S--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 106 iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
+|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+. ......
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-----------~G~l~~ 159 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-----------AGQLLA 159 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-----------cceeEe
Confidence 99765 2 12234567899999999999999999999999999999994 466788
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------------------c----ccceeEEE
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------------------F----PSVIDAIA 225 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~----~~~i~~~~ 225 (451)
.+..|...+..++|.|-+ .++++-+.|...+.+.+...+.+.... | +.-...++
T Consensus 160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecchhh--hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 889999999999999987 899999999877777765443332221 1 12245678
Q ss_pred ECCCCCEEEEEeC----CC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-----------------
Q 012996 226 LDPAEHVFYAGSR----DG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST----------------- 279 (451)
Q Consensus 226 ~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------------- 279 (451)
|+|+|..+++... .+ ..++|+-.... ++...+.....++..+.++|
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~--------rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~l 309 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK--------RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVL 309 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeecccccc--------CceeecCCCCcceEEEEeeeeEEEecccccccccccc
Confidence 9999999987542 22 23444433221 33334444444444444433
Q ss_pred --CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996 280 --GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 280 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
+..++.++ ...|.|||..+..++.... .|-.+|++++|++||.+|+..|.||..-+-.+.+..+.
T Consensus 310 pyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 310 PYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 23455554 4579999999988887654 67889999999999999999999999877777665554
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.1e-24 Score=185.26 Aligned_cols=262 Identities=16% Similarity=0.208 Sum_probs=193.3
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
.|.+.|+.+.|.|....|++++.||.|.+|+++. -+.+.+|++|.++|.|+++.+++.++++|+-||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 3677899999999999999999999999999932 15678899999999999999999999999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEE
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL 226 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~ 226 (451)
++... ...............+.||...|+.++++... ..|++++.||++++|+.....+ ..+. ..+...++.+
T Consensus 372 ~~p~n-~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 372 NLPPN-QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred ccCCC-CCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 87521 11111112234566789999999999999988 7899999999999999876665 3332 2334455555
Q ss_pred CCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE
Q 012996 227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR 304 (451)
Q Consensus 227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~ 304 (451)
-... ...++...-+.-.++++.......... .. ..........+..+.++| ..+.+++..|+.|+++|..++.++.
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~-s~-~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFE-SS-ASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeecc-cc-CCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 4332 222222222322333333221100000 00 000011124577788889 9999999999999999999999999
Q ss_pred EeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996 305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 305 ~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
....|...++++++.|+|.+|++++.|+.+++|+.....+.
T Consensus 526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred heeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 99999999999999999999999999999999998765443
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.4e-22 Score=166.06 Aligned_cols=281 Identities=15% Similarity=0.202 Sum_probs=202.1
Q ss_pred EEEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceee
Q 012996 3 LLIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~ 75 (451)
..+|+.+ ...+.+|...... .+..+... .+......++ |+-+ ..++|++|.- |.|+|.|+.+++..-
T Consensus 56 ~vfatvG--~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcs--w~yd~~~~~p~la~~G~~-GvIrVid~~~~~~~~ 129 (385)
T KOG1034|consen 56 QVFATVG--GNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCS--WSYDSNTGNPFLAAGGYL-GVIRVIDVVSGQCSK 129 (385)
T ss_pred ceEEEeC--CcEEEEEEECCccceeeeeeccCC-CCCcceEEEE--EEecCCCCCeeEEeecce-eEEEEEecchhhhcc
Confidence 3566666 5688899876433 33333322 3555555555 6543 4578888887 999999999888764
Q ss_pred e-ecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 76 K-SLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 76 ~-~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
. ..|...|+.|.+.|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|+++|.+|+++|.|..|++|+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 3 5689999999999965 68899999999999999999999887 67999999999999999999999999999999
Q ss_pred Ccchhhhhhhhc---------------c--cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCce-
Q 012996 151 LLTVFEECESQR---------------A--SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL- 211 (451)
Q Consensus 151 ~~~~~~~~~~~~---------------~--~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~- 211 (451)
+....-...... . ..+...+-..|...|.|+.|-- +++++-+.++.|..|... -.+.
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~ 285 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESI 285 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhh
Confidence 973211110000 0 0000113345777888877743 689999999999999872 1111
Q ss_pred ------------eeeeec-cccee--EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996 212 ------------LRNIVF-PSVID--AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (451)
Q Consensus 212 ------------~~~~~~-~~~i~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 276 (451)
+..+.. ...|. ..+|+|-++.|+.|...|.|++||++...+.. ............|...+
T Consensus 286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~-----~ttl~~s~~~~tVRQ~s 360 (385)
T KOG1034|consen 286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK-----CTTLTHSKSGSTVRQTS 360 (385)
T ss_pred hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc-----CceEEeccccceeeeee
Confidence 112221 12333 34667889999999999999999999876421 11111122346889999
Q ss_pred Eec-CCEEEEEcCCCcEEEEeCC
Q 012996 277 YST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 277 ~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|+. +.+|+..+.|++|.-||..
T Consensus 361 fS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 361 FSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ecccCcEEEEEeCCCcEEEEEee
Confidence 999 9999999999999999854
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=4e-22 Score=178.00 Aligned_cols=263 Identities=16% Similarity=0.244 Sum_probs=211.2
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~ 81 (451)
|++||+|+ .+.+||...|..+.++++ |...|.|++ |+.+|+.+|+|+.| ..|.+|+-. -+-..+..|.+
T Consensus 26 qL~lAAg~----rlliyD~ndG~llqtLKg---HKDtVycVA--ys~dGkrFASG~aD-K~VI~W~~k-lEG~LkYSH~D 94 (1081)
T KOG1538|consen 26 QLILAAGS----RLLVYDTSDGTLLQPLKG---HKDTVYCVA--YAKDGKRFASGSAD-KSVIIWTSK-LEGILKYSHND 94 (1081)
T ss_pred eEEEecCC----EEEEEeCCCccccccccc---ccceEEEEE--EccCCceeccCCCc-eeEEEeccc-ccceeeeccCC
Confidence 45666666 799999999999988886 558899999 99999999999999 999999843 33446777999
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.|.|+.|+|-...|++++-+ ..-+|........+ . .....|.+.+|..||++|+.|-.||+|.+-+-..
T Consensus 95 ~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-------- 163 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-------- 163 (1081)
T ss_pred eeeEeecCchHHHhhhcchh-hccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC--------
Confidence 99999999999999997764 57788765433222 1 2345788999999999999999999999986532
Q ss_pred cccccceecccCCcCceeEEEEeecC---CeeEEEEeeCCCcEEEEEcCCCceee-eeecccceeEEEECCCCCEEEEEe
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGG---VSATIVSASEDRTCKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~---~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
.....+....+...+|.+++|+|.. ....+++.....++.+|.+. |+.+. .-...-...|+.+.|+|.++..|+
T Consensus 164 -Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGG 241 (1081)
T KOG1538|consen 164 -EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGG 241 (1081)
T ss_pred -CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEcc
Confidence 2233444556678899999999853 34688999999999999985 44444 444666778999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
.|+.+.+|.-.. -.+.++.....+|+.++..| +.+++.|+.||+|..|++.
T Consensus 242 sdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 242 SDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCceEEEeecC----------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999997654 34566666788999999999 9999999999999999864
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=9.7e-22 Score=180.84 Aligned_cols=272 Identities=15% Similarity=0.181 Sum_probs=202.7
Q ss_pred ccEEEEECCCCc-eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcc--eee----eccccCCeeEEEEcc
Q 012996 61 GSILYWSWSKPQ-VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRL--LKK----WHAHYRAVTCLVFSE 132 (451)
Q Consensus 61 g~i~vw~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~~~~~~ 132 (451)
+.+.||++..+. ..........|.|+.|+| +.++++.|+.+|.|.+||++.+.. ... ...|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 579999998773 334455678999999999 667888999999999999987755 222 246889999999977
Q ss_pred CC--cEEEEeeCCCcEEEeeCcchhhhhhhhcccc-cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE---c
Q 012996 133 DG--SFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS---L 206 (451)
Q Consensus 133 ~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd---~ 206 (451)
+. .-|++++.||.|+.|+++............. .....-......++++.|.+... ..++.|+.+|.|.--+ .
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p-~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP-NHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC-ceEEEEcCCcEEEEEeccCC
Confidence 44 4499999999999999876433221111111 00111112345678889987655 7899999999887733 2
Q ss_pred CCCc-----ee-eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-
Q 012996 207 LKGR-----LL-RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST- 279 (451)
Q Consensus 207 ~~~~-----~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 279 (451)
+... .. ....|.++|+++.++|-+..++..+.|..+++|...... .++..+..+...|++++|||
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--------~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--------SPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC--------CcchhhhhccceeeeeEEcCc
Confidence 2222 11 222378999999999977666655559999999987332 45666777888899999999
Q ss_pred -CCEEEEEcCCCcEEEEeCCC--CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 280 -GDLLISGSEDGMVRVWDPIT--HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 280 -~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
...|+++..||.|.+||+.. ..++.+...+....+.+.|++.|+.|++|...|.+.+|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 77999999999999999864 456666666667788889999999999999999999999763
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.9e-22 Score=165.25 Aligned_cols=288 Identities=17% Similarity=0.243 Sum_probs=209.6
Q ss_pred CCCCceEEecceEe---e--ccCcccCCCCCCccEEEEECCCCc--eeee----ecCCCCeeEEEECCC----CcEEEEe
Q 012996 34 SPPHGLACVGQRFL---A--SSQLREQPSASSGSILYWSWSKPQ--VEVK----SLPAEPIKPIAANSH----GTYIAGG 98 (451)
Q Consensus 34 ~~~~~v~~~~~~~~---~--~~~~l~~~~~d~g~i~vw~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~l~~~ 98 (451)
.|...|..++ |. . .-+.+|++|. ..+.+|.....- .... ..+.+....++|+-+ ..++|+|
T Consensus 36 d~~~~I~gv~--fN~~~~~~e~~vfatvG~--~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 36 DHNKPIFGVA--FNSFLGCDEPQVFATVGG--NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred cCCCccceee--eehhcCCCCCceEEEeCC--cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3445566555 44 2 2345566666 689999876433 1111 125677888888653 5688999
Q ss_pred ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee---cccCC
Q 012996 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH---SFTGH 174 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~ 174 (451)
+.-|.|+|.|+.++++...+.+|...|+.+.++|+ .+++++++.|..|++|++++ ..++. ...+|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-----------~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-----------DVCVAVFGGVEGH 180 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-----------CeEEEEecccccc
Confidence 99999999999999999999999999999999994 57899999999999999965 33333 45689
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------------cccceeEEE
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIA 225 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~ 225 (451)
...|.++.|+.++ .++++++.|..+++|++...+....+. |...|.|+.
T Consensus 181 rdeVLSvD~~~~g--d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvr 258 (385)
T KOG1034|consen 181 RDEVLSVDFSLDG--DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVR 258 (385)
T ss_pred cCcEEEEEEcCCC--CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHH
Confidence 9999999999999 799999999999999997433221111 222333333
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCCC-----CCCCCceeeeeeccCCcceeEEEE--ec-CCEEEEEcCCCcEEEEeC
Q 012996 226 LDPAEHVFYAGSRDGSIYIAALNAESPS-----TSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~l~s~~~dg~i~iwd~ 297 (451)
| -|+++++-+-++.|..|....-... ........+..+.-....|+-+.| .| ++.||.|...|.|.+||+
T Consensus 259 w--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL 336 (385)
T KOG1034|consen 259 W--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDL 336 (385)
T ss_pred H--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEEC
Confidence 3 2578888888999999987321111 111112334455555566666655 45 899999999999999999
Q ss_pred CCCceEE--EeecC--CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 298 ITHNIVR--MFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 298 ~~~~~~~--~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+..++.. ++..+ ...|...+|+.||..|+....|++|.-||.-
T Consensus 337 ~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 337 DNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 8876632 23222 3479999999999999999999999999853
No 166
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.89 E-value=8.6e-22 Score=175.93 Aligned_cols=271 Identities=16% Similarity=0.184 Sum_probs=214.9
Q ss_pred ceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 116 (451)
+|..++ |-|||..|+.+.. ..+.+||.+.+... ....|.+.|.|++|+.||..+|+|+.|..|.+|.-+-.-.+
T Consensus 14 ci~d~a--fkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIA--FKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeE--ECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 677778 9999999988877 58999999876654 45679999999999999999999999999999985322222
Q ss_pred eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEE
Q 012996 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s 194 (451)
. ..|.+.|.|+.|+|-...|++++.. ..-+|.... .....|. ..+.+.+|..+| .+++.
T Consensus 89 k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~q---------------K~V~K~kss~R~~~CsWtnDG--qylal 149 (1081)
T KOG1538|consen 89 K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQ---------------KSVSKHKSSSRIICCSWTNDG--QYLAL 149 (1081)
T ss_pred e-eccCCeeeEeecCchHHHhhhcchh-hccccChhh---------------hhHHhhhhheeEEEeeecCCC--cEEEE
Confidence 2 3699999999999988899998875 678898743 1122233 455566666666 99999
Q ss_pred eeCCCcEEEEEcCCCceeeeee----cccceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
|-.+|+|.+-+- +++....+. .+++|.+++|+|.. ..+++.....++.+|.+... .+..-
T Consensus 150 G~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~----------~Igk~ 218 (1081)
T KOG1538|consen 150 GMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK----------QIGKD 218 (1081)
T ss_pred eccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----------eeccc
Confidence 999999999874 455444444 46789999999953 57888888888888888763 23333
Q ss_pred ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 266 ~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
+.-.-...|+.+.+ |.+++.|+.|+.+.+|- +.|-.+.++......|+.++..|++++++.|+.||++.-|++-....
T Consensus 219 r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTV 297 (1081)
T KOG1538|consen 219 RALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTV 297 (1081)
T ss_pred ccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHh
Confidence 33445667888889 99999999999999997 67888888888888999999999999999999999999888654433
No 167
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.6e-19 Score=170.03 Aligned_cols=315 Identities=26% Similarity=0.446 Sum_probs=238.4
Q ss_pred EEeecCCCCCCeEEEECccCc-eeeeeecCCCCCCceEEecceE-eeccC-cccCCCCCCccEEEEECCC--Cceeeeec
Q 012996 4 LIASSSVADTGIGCWDLESGA-EQLRYKSCASPPHGLACVGQRF-LASSQ-LREQPSASSGSILYWSWSK--PQVEVKSL 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~-~l~~~~~d~g~i~vw~~~~--~~~~~~~~ 78 (451)
.++.++ .|+.+.+|+...+. ....+..... ..+..+. + .+++. .++..+..++.+.+|+... ........
T Consensus 79 ~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 153 (466)
T COG2319 79 LLLSGS-SDGTIKLWDLDNGEKLIKSLEGLHD--SSVSKLA--LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153 (466)
T ss_pred EEEEec-CCCcEEEEEcCCCceeEEEEeccCC--CceeeEE--EECCCcceEEeccCCCCccEEEEEecCCCeEEEEEec
Confidence 456666 79999999998876 6666655332 3555555 4 67777 4555455349999999987 44455667
Q ss_pred CCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~ 156 (451)
|...|..+.|+|++.++++++. ++.+++|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...
T Consensus 154 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~--- 230 (466)
T COG2319 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST--- 230 (466)
T ss_pred CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC---
Confidence 8899999999999998888885 99999999999888999999999999999999987 555669999999998742
Q ss_pred hhhhhccccccee-cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeee-ecccceeEEEECCCCCEE
Q 012996 157 ECESQRASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-VFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-~~~~~i~~~~~~~~~~~l 233 (451)
..... .+.+|.... ...|++++ ..+++++.|+.+++|++..... ...+ .+...+.++.|.|++..+
T Consensus 231 --------~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 231 --------GKLLRSTLSGHSDSV-VSSFSPDG--SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred --------CcEEeeecCCCCcce-eEeECCCC--CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 33334 577777775 33788887 7888999999999999987664 3333 367889999999988888
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEecC-CEEEEE-cCCCcEEEEeCCCCceEEEeecC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYSTG-DLLISG-SEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
++++.|+.+.+|+..... .... ...|...+..+.+.+. ..++.+ ..|+.+.+|+.............
T Consensus 300 ~~~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 370 (466)
T COG2319 300 ASGSSDGTVRLWDLETGK---------LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH 370 (466)
T ss_pred EEeeCCCcEEEEEcCCCc---------eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC
Confidence 889999999999887753 1222 2467778999999323 566666 68899999999888733333332
Q ss_pred CCCeeEEEEEecCceeee-ccCCCCccccccCCCCCCCcc
Q 012996 310 KGPVNNILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~-~s~d~~i~iw~~~~~~~~~~~ 348 (451)
..+..+.+++ ...+.. +..++.+.+|+..........
T Consensus 371 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (466)
T COG2319 371 -SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNL 408 (466)
T ss_pred -ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeec
Confidence 2388999999 544444 689999999998876554433
No 168
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.8e-22 Score=189.68 Aligned_cols=234 Identities=22% Similarity=0.303 Sum_probs=188.0
Q ss_pred EEEeecCCCCCCeEEEECcc---CceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeee-
Q 012996 3 LLIASSSVADTGIGCWDLES---GAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKS- 77 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~- 77 (451)
-+||.|. .||.|.+||... +.....+.....|.+.|..+. |.+... .||+|+.+ |.|.|||+++.+.....
T Consensus 81 GlIaGG~-edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLD--fN~~q~nlLASGa~~-geI~iWDlnn~~tP~~~~ 156 (1049)
T KOG0307|consen 81 GLIAGGL-EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLD--FNPFQGNLLASGADD-GEILIWDLNKPETPFTPG 156 (1049)
T ss_pred ceeeccc-cCCceEEecchhhccCcchHHHhhhcccCCceeeee--ccccCCceeeccCCC-CcEEEeccCCcCCCCCCC
Confidence 3678888 999999999875 444444444555666777777 999877 66666666 99999999987665444
Q ss_pred --cCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccC--CeeEEEEccCC-cEEEEeeCCC---cEEE
Q 012996 78 --LPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--AVTCLVFSEDG-SFLISGSEDG---CVRI 148 (451)
Q Consensus 78 --~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~s~~~dg---~i~v 148 (451)
...+.|.+++|+.. ...|++++.+|.+.|||++..+.+-.+..|.+ .+..+.|+|+. ..+++++.|. .|.+
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pviql 236 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQL 236 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEe
Confidence 24678999999874 56789999999999999999888777755544 57789999965 4566666653 5999
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEEC
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALD 227 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~ 227 (451)
||++. ...+++.+.+|...|.++.|++.+. .++++++.|+.|.+|+..+++.+..+. ....+..+.|+
T Consensus 237 WDlR~----------assP~k~~~~H~~GilslsWc~~D~-~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 237 WDLRF----------ASSPLKILEGHQRGILSLSWCPQDP-RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred ecccc----------cCCchhhhcccccceeeeccCCCCc-hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 99964 4556778899999999999998765 799999999999999999999999988 56779999999
Q ss_pred CCC-CEEEEEeCCCcEEEEEccCCC
Q 012996 228 PAE-HVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 228 ~~~-~~l~~~~~dg~i~i~d~~~~~ 251 (451)
|.. ..+++++.||.|.||.+....
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCC
Confidence 965 488899999999999998764
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5.3e-22 Score=163.56 Aligned_cols=230 Identities=15% Similarity=0.242 Sum_probs=175.9
Q ss_pred cEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 93 TYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 93 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++. ........
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs---------~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRS---------QAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeec---------chhhhhee
Confidence 5688999999999999999999999999999999999987 456799999999999999987 33334445
Q ss_pred ccCCc-CceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCce-eeeee--cccceeEEEECC-CCCEEEEEeCCCc
Q 012996 171 FTGHT-LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRL-LRNIV--FPSVIDAIALDP-AEHVFYAGSRDGS 241 (451)
Q Consensus 171 ~~~~~-~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~-~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~ 241 (451)
+..++ .+..+++..... +++++|+. +-.|.+||++..+. +..+. |...|+++.|+| +.+.|++|+.||.
T Consensus 112 ~~~~~~~~f~~ld~nck~--~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGL 189 (376)
T KOG1188|consen 112 WTQQSGTPFICLDLNCKK--NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGL 189 (376)
T ss_pred ccCCCCCcceEeeccCcC--CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccce
Confidence 55555 455555555444 67777753 66899999998776 66655 889999999999 6789999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEE---------------
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVR--------------- 304 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~--------------- 304 (451)
|.+||+...... ..+.....|...|.++.|.. -+.|.+-+..++..+|+++.+.+..
T Consensus 190 vnlfD~~~d~Ee------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 190 VNLFDTKKDNEE------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred EEeeecCCCcch------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 999999875311 22333445677788888877 3467777778888888776543211
Q ss_pred ----------------------------------------------Eee-cCCCCeeEEEEEecCceeeeccCCCCcccc
Q 012996 305 ----------------------------------------------MFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSS 337 (451)
Q Consensus 305 ----------------------------------------------~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw 337 (451)
.+. +|..-|.++.|...+.++.||+.||.+.+|
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 111 244457778888888899999999999999
Q ss_pred cc
Q 012996 338 RR 339 (451)
Q Consensus 338 ~~ 339 (451)
..
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 96
No 170
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.1e-20 Score=158.65 Aligned_cols=287 Identities=11% Similarity=0.069 Sum_probs=217.3
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------Cceeee--ecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------PQVEVK--SLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 105 (451)
+|-.+|.++. |+.++++|++||.| ..+++|+++. ++.... ..|...|.|++|...++++.+|+.+++|.
T Consensus 54 ~H~GCiNAlq--FS~N~~~L~SGGDD-~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQ--FSHNDRFLASGGDD-MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhccccceee--eccCCeEEeecCCc-ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4667788888 99999999999998 9999999862 222222 23568999999999999999999999999
Q ss_pred EEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 106 MWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 106 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
..|+++.+.+..+. ...+.|..+..+|-.+.|++.+.+|.|.+||.+.. ........+.........+.|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~--------~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR--------QNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCC--------CCCCceeeecCCCccceeeee
Confidence 99999998888774 23458999999998899999999999999999762 111122223334456677888
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee----ccc---ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV----FPS---VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS 255 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~----~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (451)
+|... .+|++.+..+-+-+||++.... +.... .+. .-.++.|+|+|..|++--....-.+||+-....
T Consensus 203 ~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~--- 278 (609)
T KOG4227|consen 203 HPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC--- 278 (609)
T ss_pred cCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc---
Confidence 88765 7899999999999999986532 11111 122 235688999999998877777777888877531
Q ss_pred CCCceeeeeeccC-------CcceeEEEEecCCEEEEEcCCCcEEEEeCCC----------C-------------ceEEE
Q 012996 256 SYGMHIIGSLSDH-------SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT----------H-------------NIVRM 305 (451)
Q Consensus 256 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~----------~-------------~~~~~ 305 (451)
++..+ .| ...+.+++|.....+++|+.+-.|.+|.+.. | ..+..
T Consensus 279 -----~V~k~-D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~V 352 (609)
T KOG4227|consen 279 -----FVLKS-DHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTV 352 (609)
T ss_pred -----eeEec-cCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEE
Confidence 11111 12 2356677887656699999999999998642 1 12456
Q ss_pred eecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 306 FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 306 ~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+++|.+-+..+.|+|...+|++.+-.+.+++|.-..
T Consensus 353 LrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 353 LRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred EecccccccceeecCCcceEeccchhhheecccccc
Confidence 789999999999999999999999999999998653
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=159.31 Aligned_cols=222 Identities=20% Similarity=0.260 Sum_probs=178.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCC--CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-----
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCA--SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV----- 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~----- 75 (451)
.++|+.+ .+.-|++||.-+|+...++++-. ....+..+++ |+|||..|++|-. ..|+++|+..+-...
T Consensus 124 ~l~a~ss-r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~--Fs~DGeqlfaGyk--rcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 124 NLFAVSS-RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQ--FSPDGEQLFAGYK--RCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred ceeeecc-ccCceeeeeccccccccchhhhhhHHhhhhheeEE--ecCCCCeEeeccc--ceEEEeeccCCCCCCcchhh
Confidence 4677788 99999999999999998886543 2334556777 9999999998877 799999995332111
Q ss_pred ----eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEe
Q 012996 76 ----KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIW 149 (451)
Q Consensus 76 ----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vw 149 (451)
+....+-+.|++|+|- ...+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|+.|++|+. |-.|..|
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 1122567899999995 458999999999999998888999999999999999999999999999987 6689999
Q ss_pred eCcchhhhhhhhcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEE
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIAL 226 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~ 226 (451)
|++. ...++..+..|.. .-..|.|.-++.+++|++|+.||.|++||+.. +..+..+. +...++.+++
T Consensus 279 DiR~----------~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl 348 (406)
T KOG2919|consen 279 DIRY----------SRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL 348 (406)
T ss_pred eehh----------ccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence 9965 4556667777766 44567777666669999999999999999988 66555554 7788999999
Q ss_pred CCCCCEEEEEeCC
Q 012996 227 DPAEHVFYAGSRD 239 (451)
Q Consensus 227 ~~~~~~l~~~~~d 239 (451)
+|.-.++++++..
T Consensus 349 nP~mpilatssGq 361 (406)
T KOG2919|consen 349 NPIMPILATSSGQ 361 (406)
T ss_pred CcccceeeeccCc
Confidence 9998888877643
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.88 E-value=3.9e-19 Score=167.40 Aligned_cols=286 Identities=28% Similarity=0.499 Sum_probs=225.8
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--eeeeecCC-CCeeEEEE-CCCCc-EEEEecc-CCCEEEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VEVKSLPA-EPIKPIAA-NSHGT-YIAGGGQ-SGDIYMW 107 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~iw 107 (451)
.+...+..+. +.+.+..++.++.+ +.+.+|+..... ........ ..+..+.+ ++++. +++..+. |+.+.+|
T Consensus 63 ~~~~~i~~~~--~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 63 GHEDSITSIA--FSPDGELLLSGSSD-GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eccceEEEEE--ECCCCcEEEEecCC-CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 4556777777 99999999988877 999999998875 22222222 36777777 88887 5555444 8999999
Q ss_pred EcCC-CcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 108 EVAS-GRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 108 d~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
+... ......+..|...|.+++|+|++..+++++. |+.+++|++.. ...+..+.+|...|.+++|++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~ 208 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-----------GKPLSTLAGHTDPVSSLAFSP 208 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-----------CceEEeeccCCCceEEEEEcC
Confidence 9988 7788888999999999999999998888886 99999999943 445666777999999999997
Q ss_pred cCCeeEEEEeeCCCcEEEEEcCCCceee-eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996 186 GGVSATIVSASEDRTCKVWSLLKGRLLR-NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (451)
Q Consensus 186 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (451)
++. ..+++++.|+.+++||...+.... .+. +.... ...|+|++..+++++.|+.+++|+...... ...
T Consensus 209 ~~~-~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~ 278 (466)
T COG2319 209 DGG-LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLR 278 (466)
T ss_pred Ccc-eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEE
Confidence 762 255556999999999998777776 344 44443 338999998999999999999999987642 222
Q ss_pred eeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCeeEEEEEecCceeeec-cCCCCcccccc
Q 012996 264 SLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLG-SFSNPHTSSRR 339 (451)
Q Consensus 264 ~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~-s~d~~i~iw~~ 339 (451)
.+.+|...+.++.|+| +..+++++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|+.
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 3367899999999999 8888889999999999999888777776 787789999993332455555 68888999998
Q ss_pred CCCC
Q 012996 340 HGSQ 343 (451)
Q Consensus 340 ~~~~ 343 (451)
....
T Consensus 359 ~~~~ 362 (466)
T COG2319 359 RTGK 362 (466)
T ss_pred CCCc
Confidence 8665
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.8e-20 Score=175.77 Aligned_cols=283 Identities=20% Similarity=0.296 Sum_probs=207.5
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee--ccCcccCCCCCCccEEEEECCCC---ceeee
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA--SSQLREQPSASSGSILYWSWSKP---QVEVK 76 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~---~~~~~ 76 (451)
|-.++++. ..-.|+|||.+.++.+..|..+..+...|+.+. +.. |..++++++.| |.|+||+-... .....
T Consensus 1076 ~p~i~~ad-~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~--liNe~D~aLlLtas~d-GvIRIwk~y~~~~~~~eLV 1151 (1387)
T KOG1517|consen 1076 EPQIAAAD-DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE--LINEQDDALLLTASSD-GVIRIWKDYADKWKKPELV 1151 (1387)
T ss_pred CceeEEcC-CcceEEEEecccCceeccccCCCCCCCccceee--eecccchhheeeeccC-ceEEEecccccccCCceeE
Confidence 45678888 788999999999999999998888888888887 654 45667777777 99999974321 11111
Q ss_pred ec----------CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEcc-CCcEEEEeeCCC
Q 012996 77 SL----------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSE-DGSFLISGSEDG 144 (451)
Q Consensus 77 ~~----------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~dg 144 (451)
.. ..+.=.-++|.....+|+++|.-..|+|||......+..+. +....|+++.-+. .|+.+++|..||
T Consensus 1152 Taw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG 1231 (1387)
T KOG1517|consen 1152 TAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG 1231 (1387)
T ss_pred EeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC
Confidence 10 11111445677766666666667889999998877766653 3445667765543 579999999999
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCc--eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee--ee----
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLR--ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--IV---- 216 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~---- 216 (451)
.|++||.+.. .....+.....|+.. |..+.+.+.|.+ .|++|+.+|.|++||++....... +.
T Consensus 1232 svRvyD~R~a--------~~ds~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~ 1302 (1387)
T KOG1517|consen 1232 SVRVYDRRMA--------PPDSLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE 1302 (1387)
T ss_pred ceEEeecccC--------CccccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcccccceeeeccc
Confidence 9999999762 233456677888887 999999888763 799999999999999997422221 21
Q ss_pred cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 217 FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
..+..+++..++....+++|+. +.|.||++.........+...... ...+.+.|++|+| .-++|+|+.|.+|.||
T Consensus 1303 yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~---q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1303 YGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMG---QRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccccc---CcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 2345999999999999999998 999999998765322221111111 1235679999999 8899999999999999
Q ss_pred eCCCCc
Q 012996 296 DPITHN 301 (451)
Q Consensus 296 d~~~~~ 301 (451)
.....+
T Consensus 1379 s~~k~~ 1384 (1387)
T KOG1517|consen 1379 SCEKPR 1384 (1387)
T ss_pred ecCCcC
Confidence 876543
No 174
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=4.4e-21 Score=170.48 Aligned_cols=154 Identities=19% Similarity=0.242 Sum_probs=121.6
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee-------eeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-------RNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 248 (451)
|+++.|.|-.. ..|++++.||.|++|.+..+-.. ..+. |...|+++.|+| ..+.|++++.|-+|++||+.
T Consensus 630 vtDl~WdPFD~-~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDD-ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCCh-HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 55566666443 78999999999999998764322 2233 778899999999 67889999999999999999
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCC-CCeeEEEEEecCcee
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAK-GPVNNILVVRRPLYL 325 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~-~~v~~l~~s~~~~~l 325 (451)
+. .....+.+|...|.+++||| |+.+++.+.||+|++|+.++++ ++++-++.. ..--.+.|.-||+++
T Consensus 709 ~~---------~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 709 NA---------KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV 779 (1012)
T ss_pred hh---------hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence 86 44568899999999999999 9999999999999999998764 444433322 234568899999999
Q ss_pred eeccCCCC----ccccccCC
Q 012996 326 NLGSFSNP----HTSSRRHG 341 (451)
Q Consensus 326 ~~~s~d~~----i~iw~~~~ 341 (451)
++.+.|.. +.+|+...
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEecccccchhhhhhhhhhh
Confidence 99887754 66777553
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.87 E-value=4.2e-21 Score=152.80 Aligned_cols=255 Identities=14% Similarity=0.142 Sum_probs=190.9
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc---
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT--- 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~--- 153 (451)
.|...|+++.|-.+++ |.+|..-|.|++|++.+...+..++ .|...|+.+.--|+ ..+.+-+.|+.+.+|++.-
T Consensus 12 p~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred cccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcce
Confidence 5778899999987776 8889999999999999998888887 67788999998887 4588999999999999854
Q ss_pred -----------hhhhhhhhccc------------------------cccee----cccCCcCceeEEEEeec-CCeeEEE
Q 012996 154 -----------VFEECESQRAS------------------------HLYLH----SFTGHTLRITDIVIGYG-GVSATIV 193 (451)
Q Consensus 154 -----------~~~~~~~~~~~------------------------~~~~~----~~~~~~~~i~~i~~~~~-~~~~~l~ 193 (451)
++......... ...+. .-.+..+.+.+..+... +..-+++
T Consensus 90 i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll 169 (323)
T KOG0322|consen 90 ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLL 169 (323)
T ss_pred EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEE
Confidence 11110000000 00000 00123344555553322 2224677
Q ss_pred EeeCCCcEEEEEcCCCceeeee-----------ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 194 SASEDRTCKVWSLLKGRLLRNI-----------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~-----------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
+|..+|.+.+||+.++..+-.+ .|..++.++.+.+....=++|+.+..+..|+++...... +.-
T Consensus 170 aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl-----q~~ 244 (323)
T KOG0322|consen 170 AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL-----QIR 244 (323)
T ss_pred EeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc-----ccc
Confidence 8889999999999987333222 267889999999876666788888899999987653211 111
Q ss_pred eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 263 GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 263 ~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
....-....|..+..-| ++.+||++.|+.||||+.++.+++..++.|.+.|.+++|+|+...+|.+|.|+.|-+|++
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22223345788889999 999999999999999999999999999999999999999999999999999999999985
No 176
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=163.74 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=191.9
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEE-CC-------CCcEEEEeccCCCEEE
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA-NS-------HGTYIAGGGQSGDIYM 106 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~i 106 (451)
+...+.|+. |+.....+.++..+ ..+.-|++.+........+.+.|....+ -+ ....|+.++.||.+.|
T Consensus 13 ~~e~vc~v~--w~~~eei~~~~dDh-~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVD--WSSNEEIYFVSDDH-QIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cceeEEeec--ccccceEEEeccCc-eEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 334556777 88877776665554 5566666665554433333333322222 11 2246778899999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
.+ +.++......+|.+.+.+-.|+|||.-|++++.||.|++|.- ......++.....+|+|++|.|+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr------------sGMLRStl~Q~~~~v~c~~W~p~ 156 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR------------SGMLRSTVVQNEESIRCARWAPN 156 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec------------cchHHHHHhhcCceeEEEEECCC
Confidence 98 678888899999999999999999999999999999999985 23344455567789999999998
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
.. +.+++.+ +.+.|=-+... ++++--.|++-|.++.|+|..+.+++|+.|-..++||-... .+...
T Consensus 157 S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~----------~Lf~S 223 (737)
T KOG1524|consen 157 SN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA----------NLFTS 223 (737)
T ss_pred CC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc----------ccccC
Confidence 74 4444443 45666555544 44444459999999999999999999999999999998763 45667
Q ss_pred ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
..|..+|++++|+|...++.++.+ +++ --+...+.|..++||+||..++.|...|.+.+
T Consensus 224 ~~~ey~ITSva~npd~~~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPEKDYLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Chhccceeeeeeccccceeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 789999999999996555555532 343 11234678999999999999999999888754
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.5e-19 Score=164.54 Aligned_cols=318 Identities=14% Similarity=0.156 Sum_probs=224.7
Q ss_pred CCCeEEEECccCce-eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-----CceeeeecCCCCeeE
Q 012996 12 DTGIGCWDLESGAE-QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSLPAEPIKP 85 (451)
Q Consensus 12 dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-----~~~~~~~~~~~~v~~ 85 (451)
+..+.+|+..++.. ......+..|.-.+.|.+ ++|.++++|++..| |.|.+|.--. .......-|...|.+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~d-GrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVA--LSPNERYLAAGDSD-GRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEE--eccccceEEEeccC-CcEEEEeccccccccccceEEEecccccce
Confidence 34688888876551 111222223444467888 99999999999998 9999997433 223333447889999
Q ss_pred EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
++|+++|.+|.+|+..|.+.+|.+.+++ ..-++.-.++|..+.++||+.+.+....|..|.+....+............
T Consensus 257 L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred eEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccC
Confidence 9999999999999999999999999988 555677789999999999999999999999999998755332222111111
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------c------ccceeEEEECCCCCEE
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------F------PSVIDAIALDPAEHVF 233 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~------~~~i~~~~~~~~~~~l 233 (451)
.....-....+-.+.++++|.. +.++-.+..|.|.+||+.+.+.+..+. . .-.+++++.+-.|.++
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~--~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRT--NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred CCccccccccccceeEEEcCCC--CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 1001112234455677788855 788888999999999999887776553 1 1246677777788888
Q ss_pred EEEe--------CCC--cEEEEEccCCCCCCCCCCcee-eeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCCC
Q 012996 234 YAGS--------RDG--SIYIAALNAESPSTSSYGMHI-IGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 234 ~~~~--------~dg--~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~~ 299 (451)
+++- .|| .+++|-....... +.. ......|...+...++.+ ...+++++.||.++||-+.+
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt-----~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKT-----FILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCcce-----eEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 8863 233 5778877654321 111 123345776666666655 34899999999999998732
Q ss_pred ----------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 300 ----------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 300 ----------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
..+...-..|..+++.++|+.||. +++.+.|++|.+||...
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 223333335788999999999995 55567899999999887
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=6.3e-20 Score=154.21 Aligned_cols=213 Identities=14% Similarity=0.212 Sum_probs=168.0
Q ss_pred eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 116 KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 116 ~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
-.+.+|.++|..++|+| +...|++||.|.+|.||.+...... .....++..+.+|...|--++|+|... +.|++
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~----~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLls 149 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT----RDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLS 149 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccc----cCcccceEEEeecceeEEEEeecccch-hhHhh
Confidence 34579999999999999 7788999999999999999543221 122356778899999999999999876 89999
Q ss_pred eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ce
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AV 272 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v 272 (451)
++.|.+|.+||+.+++.+.++.|+..|.+++|+.+|.+|++.+.|..|++||.+++. .+..-.+|.+ +.
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~---------~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT---------VVSEGVAHEGAKPA 220 (472)
T ss_pred ccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---------EeeecccccCCCcc
Confidence 999999999999999999999999999999999999999999999999999999974 4444456654 34
Q ss_pred eEEEEecCCEEEEEc---CCCcEEEEeCCCCc---eEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCCCC
Q 012996 273 TCLAYSTGDLLISGS---EDGMVRVWDPITHN---IVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 273 ~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~---~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~~~ 343 (451)
..+....+.++.||- ++..+-+||..+.+ .+.++.. .+.|.-=.|.+|...+ ++|-.|+.|+.|.+....
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 444444377555553 47789999977643 2334443 3456666778888877 456689999999987654
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=7.7e-19 Score=158.46 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=175.5
Q ss_pred CccEEEEECCC-Ccee--eeecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCC-Ccc--eeeeccccCCeeEEEEcc
Q 012996 60 SGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GRL--LKKWHAHYRAVTCLVFSE 132 (451)
Q Consensus 60 ~g~i~vw~~~~-~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~~~~~~ 132 (451)
++.|.+|++.+ +... ......+....++++|++++|++++ .++.|.+|++.. +.. +.... ..+....++|+|
T Consensus 11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC
Confidence 39999999963 3322 2223446788999999999987664 478899999863 332 22222 334567899999
Q ss_pred CCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCc
Q 012996 133 DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGR 210 (451)
Q Consensus 133 ~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~ 210 (451)
++++|++++. ++.|.+|++.+... ....+..+. +.....+++++|++ +++ ++...++.|.+||+.+..
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~-------~~~~~~~~~-~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGI-------PVAPIQIIE-GLEGCHSANIDPDN--RTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCC-------CCCceeecc-CCCcccEeEeCCCC--CEEEEeeCCCCEEEEEEECCCC
Confidence 9999888765 78999999853100 001122222 22345667888887 555 455567999999997633
Q ss_pred eee-------eeecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEE
Q 012996 211 LLR-------NIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLA 276 (451)
Q Consensus 211 ~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 276 (451)
.+. ..........++|+|++++++++.. ++.|.+|++...... ...+..+.. +......+.
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE-----IECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC-----EEEEEEEecCCCcCCCCccceeEE
Confidence 221 1223455678999999999998876 899999999743110 122222211 112334688
Q ss_pred Eec-CCEEEEEcC-CCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccC-CCCccccccC
Q 012996 277 YST-GDLLISGSE-DGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSF-SNPHTSSRRH 340 (451)
Q Consensus 277 ~~~-~~~l~s~~~-dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~-d~~i~iw~~~ 340 (451)
++| +++++++.. ++.|.+|++.... .+..+.. ......+.|+|+|++|+++.. ++.|.+|+++
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999 898888854 7899999986533 2222222 124568999999999987765 8999999875
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.3e-20 Score=156.76 Aligned_cols=258 Identities=16% Similarity=0.213 Sum_probs=186.4
Q ss_pred eeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCc
Q 012996 75 VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGC 145 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~ 145 (451)
....|.++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|-.++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4456899999999999 6778999999999999998655 44667889999999999999 4578899999999
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc-cceeE
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP-SVIDA 223 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~-~~i~~ 223 (451)
|.+|++.+ ...+.++. |...|+++.|+.+| .++++++.|..|+|||.++++.+..-. |. .....
T Consensus 156 v~iWnv~t-----------geali~l~-hpd~i~S~sfn~dG--s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~R 221 (472)
T KOG0303|consen 156 VSIWNVGT-----------GEALITLD-HPDMVYSMSFNRDG--SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPAR 221 (472)
T ss_pred EEEEeccC-----------CceeeecC-CCCeEEEEEeccCC--ceeeeecccceeEEEcCCCCcEeeecccccCCCcce
Confidence 99999966 33344455 99999999999999 899999999999999999999988764 43 34556
Q ss_pred EEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCC
Q 012996 224 IALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI 298 (451)
Q Consensus 224 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~ 298 (451)
+.|-.++.++-+|. .+..+-+||..+.... -....+. ..+.|.-=.|.+ .+ ..++|-.|+.|+.|.+.
T Consensus 222 aifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 222 AIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred eEEeccCceeeeccccccccceeccCcccccCc------ceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 67778888665553 4678999998775411 1122332 334555555666 34 44566679999999987
Q ss_pred CCce-EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcccccccccc
Q 012996 299 THNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPLDKYVTSAD 356 (451)
Q Consensus 299 ~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~~~~~~~~ 356 (451)
...+ ++.+.. ...+-..+.|-|.- -+-.+.....++|+.... ...++.-++..+.
T Consensus 295 ~d~P~~hyln~f~S~epQRG~g~mPKR--Gl~Vs~cEI~rfyKl~~~-~~epIsm~VPRkS 352 (472)
T KOG0303|consen 295 NEPPFVHYLNTFSSKEPQRGMGFMPKR--GLDVSKCEIARFYKLHER-KCEPISMTVPRKS 352 (472)
T ss_pred CCCceeEEecccccCCccccccccccc--cccchHHHHHHHHHhhcc-eeeeEEEeccccc
Confidence 6552 333322 24567778888743 233344456778887766 4444444444433
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.8e-19 Score=155.96 Aligned_cols=352 Identities=12% Similarity=0.117 Sum_probs=208.1
Q ss_pred EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-----------CCCEEEEE
Q 012996 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-----------SGDIYMWE 108 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd 108 (451)
+.+. |||.|.||++-.. ..|.+|--.+-....+..| ..|.-+.|||+.+||++-+. ...+.|||
T Consensus 214 tyv~--wSP~GTYL~t~Hk--~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 214 TYVR--WSPKGTYLVTFHK--QGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeEE--ecCCceEEEEEec--cceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 3445 9999999999988 5799998776666666666 46899999999999998643 25699999
Q ss_pred cCCCcceeeeccc--cCCee-EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 109 VASGRLLKKWHAH--YRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 109 ~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
+.+|...+.+... ...++ -+.||.|++++|.-..| .|.||+..+. .++..-.-.-..|....|+|
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf-----------~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF-----------MLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-----------eeecccccCCccccCcccCC
Confidence 9999999888652 22333 36899999999987775 7899987431 11111111112233333333
Q ss_pred cC---------------------------------------------CeeEEEEe----------eCCCcEEEEEcCCCc
Q 012996 186 GG---------------------------------------------VSATIVSA----------SEDRTCKVWSLLKGR 210 (451)
Q Consensus 186 ~~---------------------------------------------~~~~l~s~----------~~d~~i~iwd~~~~~ 210 (451)
.+ .+.+|+.- +.-..+.|+.++...
T Consensus 357 ~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd 436 (698)
T KOG2314|consen 357 TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD 436 (698)
T ss_pred CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC
Confidence 32 11222210 000112222222221
Q ss_pred -eeeeeecccceeEEEECCCCCEEEEEeC---CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996 211 -LLRNIVFPSVIDAIALDPAEHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 211 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s 285 (451)
++........|...+|.|.|+.+++-+. ..++.+|.+.+... .+..+..+.. ...+.+.|+| |++++.
T Consensus 437 Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-----~~~lVk~~dk--~~~N~vfwsPkG~fvvv 509 (698)
T KOG2314|consen 437 IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-----KPSLVKELDK--KFANTVFWSPKGRFVVV 509 (698)
T ss_pred CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-----chhhhhhhcc--cccceEEEcCCCcEEEE
Confidence 1222334567888899999988877554 34788888774221 1233444432 5668899999 998887
Q ss_pred E---cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC------CCCccccccCCCCCCCcccccccccc
Q 012996 286 G---SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQLPPPLDKYVTSAD 356 (451)
Q Consensus 286 ~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~------d~~i~iw~~~~~~~~~~~~~~~~~~~ 356 (451)
+ |..|.+.++|.....+..+-..-....+.+.|.|.|+|+++++. |...++|++.|..+ ....
T Consensus 510 a~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll--------~~~~ 581 (698)
T KOG2314|consen 510 AALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL--------KEDI 581 (698)
T ss_pred EEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH--------HHHH
Confidence 6 45789999998753333222221235688999999999999874 45567777766432 2222
Q ss_pred ccccceeEEecCCCCCCCCCCcccchhhHHHHHHHhhhcCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 357 EDVDKKGVIRLPSLYNAPRDASYISHRTIENHIKELQQQGSSAA------TEMEVERLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
.....+.+++++.+ +.++.+.+++..+.|++...... .-....+|.+..+++++...+.+.+..+.+
T Consensus 582 i~~f~qF~WRPRPp-------s~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrRqlm~~f~~yR~~~~~~~ 654 (698)
T KOG2314|consen 582 IDRFKQFLWRPRPP-------SLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRRQLMEQFTEYREKIIEEM 654 (698)
T ss_pred HHHHHhhccCCCCC-------cccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344555433 33444444444455543322111 111124455555555555555555544333
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=9.2e-21 Score=166.30 Aligned_cols=254 Identities=21% Similarity=0.243 Sum_probs=190.2
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---------eeeeecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDI 104 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 104 (451)
+|..++..++ |.|....+++++.+ |++.+|++.... +.....|.++|.|+++.+++..+.+|+.||+|
T Consensus 292 s~~d~ir~l~--~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 292 SHDDCIRALA--FHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred cchhhhhhhh--cCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5678888888 99999999999999 999999993211 12334589999999999999999999999999
Q ss_pred EEEEcCCC----------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 105 YMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 105 ~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
+.|++... .....+.+|.+.|+.+++|+....|++++.||+++.|+.... ..+.......
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~----------~~~~f~~~~e 438 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE----------SPCTFGEPKE 438 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc----------CccccCCccc
Confidence 99966421 234567899999999999998888999999999999998441 1111111111
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (451)
.+.-.++.+..... ...++...-+.-.++++.....+..+. ....+..+.++|.+.+.+++..|+.|+++|
T Consensus 439 ~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~d 517 (577)
T KOG0642|consen 439 HGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFD 517 (577)
T ss_pred cCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccc
Confidence 22223444332211 223333333333444444444444333 124577889999999999999999999999
Q ss_pred ccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
..++ .++.....|...++++++.| |.+|++++.||.+++|.+....++.....|.
T Consensus 518 n~~~---------~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 518 NKTG---------KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cccc---------ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 9987 55777888999999999999 9999999999999999998888888777664
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=145.83 Aligned_cols=273 Identities=16% Similarity=0.217 Sum_probs=193.3
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC----C---ccEEEEECCCCcee---------
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----S---GSILYWSWSKPQVE--------- 74 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~---g~i~vw~~~~~~~~--------- 74 (451)
.|+.|.+-+++.+.....-+....+.+.|..++ -+|..+.+++.... . ..+.||.+..+...
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~la--s~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLA--SSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhh--cCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 356677777665443322334444667777777 77766655443321 1 35789998644322
Q ss_pred --eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-eeee-----ccccCCeeEEEEcc--CCcEEEEeeCCC
Q 012996 75 --VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKW-----HAHYRAVTCLVFSE--DGSFLISGSEDG 144 (451)
Q Consensus 75 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~s~~~dg 144 (451)
....+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+ ..|....++-+|+| +++.+++. .|+
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~ 193 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDS 193 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCC
Confidence 1111345899999999999998855 78999999987765 3333 23566788889998 77777765 478
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-ccccee
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVID 222 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~ 222 (451)
++..||+++... ....-..|...|.++.|+|+.. .+|++|+.||.|+|||.+.. .++..+. |...+.
T Consensus 194 tl~~~D~RT~~~----------~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 194 TLQFWDLRTMKK----------NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred cEEEEEccchhh----------hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 999999987321 2223356888899999999875 78999999999999999864 4556665 788999
Q ss_pred EEEECC-CCCEEEEEeCCCcEEEEEccCCCCC--------------------CCCCCceeeeeeccCCcceeEEEEec-C
Q 012996 223 AIALDP-AEHVFYAGSRDGSIYIAALNAESPS--------------------TSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (451)
Q Consensus 223 ~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~--------------------~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 280 (451)
++.|+| ...++++|+.|..|.+|....-... ..+.....+.++..|...|++++||. .
T Consensus 263 ~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 263 AVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCC
Confidence 999999 5677889999999999976543210 00111233557888999999999999 4
Q ss_pred -CEEEEEcCCCcEEEEeCC
Q 012996 281 -DLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 281 -~~l~s~~~dg~i~iwd~~ 298 (451)
=.||+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 467778999999887764
No 184
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-19 Score=141.29 Aligned_cols=251 Identities=18% Similarity=0.211 Sum_probs=183.5
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCC----------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG----------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
.|.+-+++|.+++|++|..+|.|.+..+++. ..+...++|.++|..++|+ ..+|++|+. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 4666789999999999999999999988542 2334558999999999998 457777765 99999988
Q ss_pred cchhhhhh--hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC
Q 012996 152 LTVFEECE--SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP 228 (451)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~ 228 (451)
+...+... .......+.+.-...-..|+++-..|.. +-++.++.|+.++-||+++|+..+.+. |...+.++.-..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 65433111 0001111111111123457788787776 567777799999999999999999998 889999999877
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
....+++|+.||++++||+++.+........+....++.| ...|-+++.+ .++|++|+ .-.+.+|.+++.++...|.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEe
Confidence 7788999999999999999998653322222222223333 3457777766 68888776 4569999999999988887
Q ss_pred cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
. .+++..+.|..| .+++++.-+.+.-|...+.
T Consensus 245 i-pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 245 I-PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred c-ccceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 5 577888888765 6777777888888887764
No 185
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=146.61 Aligned_cols=273 Identities=14% Similarity=0.186 Sum_probs=198.5
Q ss_pred CCCceEEecceEe--ec-cCcccCCCCC---CccEEEEECC--CCceeee--ecCCCCeeEEEECCCCc-----EEEEec
Q 012996 35 PPHGLACVGQRFL--AS-SQLREQPSAS---SGSILYWSWS--KPQVEVK--SLPAEPIKPIAANSHGT-----YIAGGG 99 (451)
Q Consensus 35 ~~~~v~~~~~~~~--~~-~~~l~~~~~d---~g~i~vw~~~--~~~~~~~--~~~~~~v~~~~~~~~~~-----~l~~~~ 99 (451)
.+-.+.+++ |+ ++ .-++|.|+.. .+.|.|-.++ +++.... ..|.-+++.+.|.|+.. +||+.+
T Consensus 43 ap~~lya~~--Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 43 APWPLYAMN--WSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred CCCceeeec--cccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc
Confidence 345567777 76 22 3445665532 2566666554 3333333 35778999999999763 466543
Q ss_pred cCCCEEEEEcCCCcc----eeee-----ccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996 100 QSGDIYMWEVASGRL----LKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 100 ~dg~i~iwd~~~~~~----~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
| .+++|.+...+. ...+ ..+..++++..|+. +.+++.+++-|-+..|||++++ .......
T Consensus 121 -D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~--------~~~~vkT 190 (364)
T KOG0290|consen 121 -D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG--------VSGTVKT 190 (364)
T ss_pred -C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeec--------cccceee
Confidence 3 799999874211 1111 23567899999987 7889999999999999999763 1222344
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECC-CCCEEEEEeCC-CcEE
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDP-AEHVFYAGSRD-GSIY 243 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~-~~~~l~~~~~d-g~i~ 243 (451)
.+-.|...|.+++|..++. ..+++.+.||.|++||++..+....+. ...+...++|++ +-+++++-..| ..|.
T Consensus 191 QLIAHDKEV~DIaf~~~s~-~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~ 269 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSR-DVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVV 269 (364)
T ss_pred EEEecCcceeEEEeccCcc-ceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEE
Confidence 5678999999999998654 799999999999999999876544443 245678899988 55677765544 5799
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce------EEEeecCCCCeeE
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNN 315 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~ 315 (451)
+.|++... .++..+++|.+.|+.++|.| ...|.+++.|..+.+||+...-. +-.+. ..+.|..
T Consensus 270 iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNq 340 (364)
T KOG0290|consen 270 ILDIRVPC--------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ 340 (364)
T ss_pred EEEecCCC--------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeee
Confidence 99999875 77889999999999999999 88999999999999999875322 22222 3568999
Q ss_pred EEEEe-cCceeeecc
Q 012996 316 ILVVR-RPLYLNLGS 329 (451)
Q Consensus 316 l~~s~-~~~~l~~~s 329 (451)
+.|++ .+..++.+.
T Consensus 341 i~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 341 IQWSSSQPDWIAICF 355 (364)
T ss_pred eeecccCCCEEEEEe
Confidence 99996 556676654
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.85 E-value=3e-18 Score=154.61 Aligned_cols=273 Identities=12% Similarity=0.156 Sum_probs=176.0
Q ss_pred EeecCCCCCCeEEEECcc-Cc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-CCceeee--ec
Q 012996 5 IASSSVADTGIGCWDLES-GA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVK--SL 78 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~-~~~~~~~--~~ 78 (451)
.++.. .++.|.+||+.+ |+ .+..+.. . .....+. ++|++++|++++..++.|.+|+++ ++..... ..
T Consensus 5 y~~~~-~~~~I~~~~~~~~g~l~~~~~~~~-~---~~~~~l~--~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 5 YIASP-ESQQIHVWNLNHEGALTLLQVVDV-P---GQVQPMV--ISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred EEEcC-CCCCEEEEEECCCCceeeeeEEec-C---CCCccEE--ECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec
Confidence 33445 689999999964 33 3344432 1 2334455 999999998776655999999987 3333222 22
Q ss_pred CCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCC-Cc---ceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCc
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GR---LLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLL 152 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~ 152 (451)
.......++|+|+++++++++. ++.|.+|++.+ +. .+..+. +.....+++++|+++++++++ .++.|.+||+.
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 3446778999999998887764 78899999964 32 222222 234567889999998886554 56899999996
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCC--Cc--eeeeee-cc------cc
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLK--GR--LLRNIV-FP------SV 220 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~-~~------~~ 220 (451)
+..... .......... .......++|+|++ +++++++. ++.|.+|++.. ++ .+..+. .+ ..
T Consensus 157 ~~g~l~----~~~~~~~~~~-~g~~p~~~~~~pdg--~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 157 DDGHLV----AQEPAEVTTV-EGAGPRHMVFHPNQ--QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred CCCccc----ccCCCceecC-CCCCCceEEECCCC--CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 411000 0000000111 12335678999988 77777665 89999999973 32 233332 11 12
Q ss_pred eeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCcEEEEeC
Q 012996 221 IDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVRVWDP 297 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~ 297 (451)
...+.++|++++++++.. ++.|.+|++...... ...+..... ......+.++| +++|+++.. +++|.+|++
T Consensus 230 ~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-----~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 230 AADIHITPDGRHLYACDRTASLISVFSVSEDGSV-----LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-----EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 336889999999999864 689999999654211 122222221 13456789999 888888775 899999987
Q ss_pred C
Q 012996 298 I 298 (451)
Q Consensus 298 ~ 298 (451)
.
T Consensus 304 ~ 304 (330)
T PRK11028 304 D 304 (330)
T ss_pred c
Confidence 4
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.8e-19 Score=163.88 Aligned_cols=270 Identities=20% Similarity=0.247 Sum_probs=196.4
Q ss_pred CCCeEEEECccC-ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-------eeecCCCCe
Q 012996 12 DTGIGCWDLESG-AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-------VKSLPAEPI 83 (451)
Q Consensus 12 dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-------~~~~~~~~v 83 (451)
++.+.||++... .+...+. ....|.|+. |+|....+++||..+|.|.+||+..+... ....|.++|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~----~~s~v~~~~--f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE----SPSEVTCLK--FCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred CceEEEEecCCCCCceEEEe----cCCceeEEE--eccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 457999999865 3333332 456788888 99988888888887799999999866542 223478899
Q ss_pred eEEEECCCC--cEEEEeccCCCEEEEEcCCCcce------eeec------cccCCeeEEEEcc-CCcEEEEeeCCCcEEE
Q 012996 84 KPIAANSHG--TYIAGGGQSGDIYMWEVASGRLL------KKWH------AHYRAVTCLVFSE-DGSFLISGSEDGCVRI 148 (451)
Q Consensus 84 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v 148 (451)
+.+.|..+- .-+++++.||.|..|+++.-... .... .....+++++|.+ +...|+.|+.+|.|.-
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 999996643 44899999999999988644321 1111 1234678999988 6678999999999877
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeee-cccceeEEEE
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDAIAL 226 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~i~~~~~ 226 (451)
-+-........ ........+..|.++|+++.++|-.. ..+++++ |.+++||.-. ...++..+. ....+++++|
T Consensus 375 ~~r~g~~~~~~---~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaW 449 (555)
T KOG1587|consen 375 GCRKGYTPAPE---VSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAW 449 (555)
T ss_pred EeccCCccccc---ccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEE
Confidence 33322111000 11223446677999999999998874 3444444 9999999977 555665555 5566999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
||. ...|+++..+|.|.+||+..... .++....-+....+.+.|++ +..|++|...|++.+|++..
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~-------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDE-------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhcccc-------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 995 56788888899999999987653 44445555567788899999 99999999999999999853
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2e-19 Score=168.78 Aligned_cols=275 Identities=16% Similarity=0.248 Sum_probs=196.0
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeec----CCCCeeEEEECC--CCcEEEEeccCCCEEEEEcCCC-----cc
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL----PAEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASG-----RL 114 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~----~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~-----~~ 114 (451)
|+|-...++++... ..|+|||++.+....... ....|+.+.+-. |..++++|+.||.|+||+-... ++
T Consensus 1072 ~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eL 1150 (1387)
T KOG1517|consen 1072 FHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPEL 1150 (1387)
T ss_pred ecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCcee
Confidence 77778888888765 799999999887643322 356899998854 5678999999999999974322 23
Q ss_pred eeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeec
Q 012996 115 LKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYG 186 (451)
Q Consensus 115 ~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~ 186 (451)
+..+. +..+.=.-+.|.....+|+++|.-..|+|||... ...+..+ .+....|+++.-...
T Consensus 1151 VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----------E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1151 VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHK-----------EQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred EEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEeccc-----------ceeEeecccCCCccceeeccccc
Confidence 32222 1222224567877666677777778999999954 2222222 234455666654433
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCce---eeeee-cccc--eeEEEECCCCCE-EEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRL---LRNIV-FPSV--IDAIALDPAEHV-FYAGSRDGSIYIAALNAESPSTSSYGM 259 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~-~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (451)
. ++.+++|..||.|++||.+.... +.... |... |..+.+.+.|-. |++|+.+|.|++||++....
T Consensus 1220 ~-gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~------- 1291 (1387)
T KOG1517|consen 1220 H-GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK------- 1291 (1387)
T ss_pred C-CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-------
Confidence 3 38999999999999999886543 22222 5544 899999886654 99999999999999998521
Q ss_pred eeeeeeccCC---cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-------CCCeeEEEEEecCceeeec
Q 012996 260 HIIGSLSDHS---KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-------KGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 260 ~~~~~~~~~~---~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~ 328 (451)
....+...|. +.++++..++ ...+|+|+. +.|+||++. |+.+..++.+ .+++.+++|+|.-..||+|
T Consensus 1292 e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1292 ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhc
Confidence 1111222222 3599999999 999999998 999999965 5555555433 3478999999999999999
Q ss_pred cCCCCccccccCCC
Q 012996 329 SFSNPHTSSRRHGS 342 (451)
Q Consensus 329 s~d~~i~iw~~~~~ 342 (451)
+.|.+|.||.....
T Consensus 1370 ~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1370 SADSTVSIYSCEKP 1383 (1387)
T ss_pred cCCceEEEeecCCc
Confidence 99999999987654
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=5.5e-21 Score=174.83 Aligned_cols=238 Identities=20% Similarity=0.335 Sum_probs=189.9
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
.|..+|+|..|...|.++++|+.|..++||...++.++....+|.+.|+.++.+.+..++++++.|..|++|.+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl------ 261 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL------ 261 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec------
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-----eeecccceeEEEECCCCCE
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHV 232 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~ 232 (451)
....++..+.+|++.|++++|+|-. +.+.||++++||.+-...+. .+.....+.++.|...+..
T Consensus 262 -----~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~ 330 (1113)
T KOG0644|consen 262 -----PDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDR 330 (1113)
T ss_pred -----CCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccc
Confidence 4566788899999999999998853 77899999999987111111 1112233444444444444
Q ss_pred EEEEeCCCc-------------------------------------EEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996 233 FYAGSRDGS-------------------------------------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 233 l~~~~~dg~-------------------------------------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 275 (451)
+++|+.|+. +.+|++.++ .....+.+|...+..+
T Consensus 331 f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvL 401 (1113)
T KOG0644|consen 331 FLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---------QLLHNLMGHSDEVYVL 401 (1113)
T ss_pred cccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc---------hhhhhhcccccceeee
Confidence 444444443 334444433 4455677899999999
Q ss_pred EEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 276 AYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 276 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.++| .....+++.||...|||+..|.+++......+.+..-.||+||..++....-|.+.|.....
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCC
Confidence 9999 56777889999999999999988887665567788899999999999988888888887643
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.8e-19 Score=155.72 Aligned_cols=213 Identities=12% Similarity=0.212 Sum_probs=158.2
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 108 (451)
.+|.++|.|+. |+.+|.+|++|+.| -.+.|||.-..+.. +...|...|.++.|-| +.+.+++|..|..|+++|
T Consensus 47 ~GH~GCVN~Le--Wn~dG~lL~SGSDD-~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 47 TGHTGCVNCLE--WNADGELLASGSDD-TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred ccccceeccee--ecCCCCEEeecCCc-ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 46778899999 99999999999988 99999998754443 4567899999999998 567899999999999999
Q ss_pred cCCC----------cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996 109 VASG----------RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 109 ~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (451)
+.+. +....+..|...|..|+-.|++ ..+.+++.||+|+-+|++......... .-...+..+...-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-DCPSILVNYNPQLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc-cccHHHHHhchhhhe
Confidence 9742 3445667899999999999987 789999999999999997632211111 011112222233345
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--------c----------eeeeee--c-----------ccceeEEEE
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------R----------LLRNIV--F-----------PSVIDAIAL 226 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~----------~~~~~~--~-----------~~~i~~~~~ 226 (451)
..++.++|... .+|++|+.|-..++||.+.. . ++..+. | ...++-+.|
T Consensus 203 lk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 203 LKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 67888888765 79999999999999995321 1 111121 0 112566789
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCC
Q 012996 227 DPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+|+|.-|++.-..-.|+++|+...
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecCC
Confidence 999999888877778999887553
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-17 Score=132.02 Aligned_cols=264 Identities=15% Similarity=0.225 Sum_probs=180.7
Q ss_pred EEEeecCCCCCCeEEEECccC---------c-eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996 3 LLIASSSVADTGIGCWDLESG---------A-EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ 72 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~---------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~ 72 (451)
-+|++|+ .+|.|.+..+.+. + .+...++ |...+..+. |. ..+|++++. |.|+-|.++...
T Consensus 23 ~~l~agn-~~G~iav~sl~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~--f~--d~~Lls~gd--G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 23 QYLFAGN-LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQA---HDGPIYYLA--FH--DDFLLSGGD--GLVYGWEWNEEE 92 (325)
T ss_pred eEEEEec-CCCeEEEEEehhhhccccCCCCCcceeeccc---cCCCeeeee--ee--hhheeeccC--ceEEEeeehhhh
Confidence 3688898 9999999987532 1 2223344 445566666 65 456666654 999999986432
Q ss_pred ee--------eee------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996 73 VE--------VKS------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI 138 (451)
Q Consensus 73 ~~--------~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 138 (451)
.. ... ..--.|+++-..|..+-++.++.|+.++-||+++|+..+++++|.+.|.++.--.....++
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee
Confidence 20 010 1123689999999777777777899999999999999999999999999998855556799
Q ss_pred EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec
Q 012996 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217 (451)
Q Consensus 139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 217 (451)
+|+.||++++||.++........... ....+..|- ..|-+++.+. .++++|+ ...+.+|.+++.++...+..
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk--~~~~lRp~~g~wigala~~e----dWlvCGg-Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYK--NPNLLRPDWGKWIGALAVNE----DWLVCGG-GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ecCCCccEEEEeccccceeEEecccc--ChhhcCcccCceeEEEeccC----ceEEecC-CCceeEEeccCCCceEEEec
Confidence 99999999999998743322211111 111223333 3355555433 5777665 45699999999999999999
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEE
Q 012996 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVW 295 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iw 295 (451)
+..+..+.|. .+.+++++..+.+.-|.+... ............++..|+. -++|-.++....+.|+
T Consensus 246 pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gv----------l~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 246 PARVHLVDFV--DDCVLIGGEGNHVQSYTLNGV----------LQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ccceeEeeee--cceEEEeccccceeeeeeccE----------EEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 9999999984 557788888888999988763 2223333334455555544 4555566666666665
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.83 E-value=4.7e-18 Score=142.03 Aligned_cols=234 Identities=15% Similarity=0.193 Sum_probs=176.2
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC--CcEEEeeCcchhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED--GCVRIWSLLTVFEEC 158 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~ 158 (451)
..+..+.|+.+...|..|+.|| .++|.................|.-+-|+ ..+++..+.+ ..+++++.+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk----- 77 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKK----- 77 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEccc-----
Confidence 4567777999999999999987 6788876655433333334456666777 4466655544 3488888843
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----cccceeEEEECCCCCEEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~ 234 (451)
...+..+. ...+|.++.+... .|+++=.+ .|+|||+++.+++.++. ++..+.++++++.+.+++
T Consensus 78 ------~~~ICe~~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylA 145 (391)
T KOG2110|consen 78 ------KTTICEIF-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLA 145 (391)
T ss_pred ------CceEEEEe-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEE
Confidence 22222222 3557888888664 44444443 39999999999999887 233455555666667887
Q ss_pred EE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc-EEEEeCCCCceEEEeecCC
Q 012996 235 AG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 235 ~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~ 310 (451)
.- ...|.|.+||..+- +++..+..|.+++.+++|++ |.+|||+|..|+ |||+.+.+|+.+.+|+...
T Consensus 146 yp~s~t~GdV~l~d~~nl---------~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~ 216 (391)
T KOG2110|consen 146 YPGSTTSGDVVLFDTINL---------QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT 216 (391)
T ss_pred ecCCCCCceEEEEEcccc---------eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc
Confidence 64 35789999999886 66778889999999999999 999999999998 8999999999999998543
Q ss_pred --CCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 311 --GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 311 --~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
..|.+|+|+|++++|++.|..++|.++++....
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 368999999999999999999999999988654
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=2.3e-18 Score=139.19 Aligned_cols=239 Identities=15% Similarity=0.206 Sum_probs=174.2
Q ss_pred CCCCCceEEecceEeeccC-----cccCCCCCCccEEEEECCCCc--eee--------eecCCCCeeEEEECC-CCcEEE
Q 012996 33 ASPPHGLACVGQRFLASSQ-----LREQPSASSGSILYWSWSKPQ--VEV--------KSLPAEPIKPIAANS-HGTYIA 96 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~-----~l~~~~~d~g~i~vw~~~~~~--~~~--------~~~~~~~v~~~~~~~-~~~~l~ 96 (451)
..|+..++-+. |.|+.. +||+++ ..+++|.+.... ... ...+..++++..|+. +-+++.
T Consensus 93 fd~~YP~tK~~--wiPd~~g~~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ig 167 (364)
T KOG0290|consen 93 FDHPYPVTKLM--WIPDSKGVYPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIG 167 (364)
T ss_pred CCCCCCccceE--ecCCccccCcchhhccc---CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeE
Confidence 35667777777 888763 455544 489999987422 211 122467999999987 778899
Q ss_pred EeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996 97 GGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172 (451)
Q Consensus 97 ~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 172 (451)
+.+-|-+..|||++++. ....+-+|..+|..++|...+ +.|++.|.||.+++||++.. .....+..-.
T Consensus 168 tSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l--------eHSTIIYE~p 239 (364)
T KOG0290|consen 168 TSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL--------EHSTIIYEDP 239 (364)
T ss_pred eecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc--------ccceEEecCC
Confidence 99999999999999873 356678999999999999844 57899999999999999763 2222333333
Q ss_pred CCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCC-ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEcc
Q 012996 173 GHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKG-RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 173 ~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 248 (451)
....+...++|++... +++++-..| ..|.|.|++.. .++..+. |.+.|+.++|.| ....+++++.|..+.+||+.
T Consensus 240 ~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred CCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 3355677788877654 677776654 56999999865 4555555 899999999999 56789999999999999998
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCC
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSED 289 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~d 289 (451)
..... . ...++..+. -.+.|+.+.|++ +++++.+...
T Consensus 319 q~~~~-~--~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 319 QMPRE-N--GEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred ccccc-C--CCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 75321 0 112222333 467899999998 8888887644
No 194
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-19 Score=156.09 Aligned_cols=299 Identities=15% Similarity=0.160 Sum_probs=222.3
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee--ecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK--SLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 108 (451)
..|.++|..+. |...|..+++++.| ..|.+||+........ ..|...|..-.|-| +.+.+++++.||.+++=.
T Consensus 139 ~~H~GcVntV~--FN~~Gd~l~SgSDD-~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 139 NKHKGCVNTVH--FNQRGDVLASGSDD-LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cCCCCccceee--ecccCceeeccCcc-ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 35666677777 99999999999988 9999999987766544 45777787777877 456789999999999877
Q ss_pred cCCC-cc--eeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC---ceeEE
Q 012996 109 VASG-RL--LKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDI 181 (451)
Q Consensus 109 ~~~~-~~--~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i 181 (451)
+... .+ ...+..|.++|.-++.-|+. .-|.+++.|+.+.-+|++..... ..+..-..+.. ...++
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa--------~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA--------EKFVCREADEKERVGLYTI 287 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc--------ceeeeeccCCccceeeeeE
Confidence 6433 22 23456799999999999954 56899999999999999763221 11112222222 56777
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcCCCce------eeee-------ecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRL------LRNI-------VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~-------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
+..|... ..+++++.|..+++||.+.-.. +..+ ..+..|++++|+.++.-|.++..|-.|+++.-.
T Consensus 288 a~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 288 AVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred ecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccc
Confidence 8877654 6899999999999999875321 1222 135679999999888888888999999999544
Q ss_pred CCCCCCC---C-CCceeeeeeccCCc--ceeEEEE-ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 249 AESPSTS---S-YGMHIIGSLSDHSK--AVTCLAY-ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 249 ~~~~~~~---~-~~~~~~~~~~~~~~--~v~~~~~-~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
.+..... . ........+++|.. .|..+-| -| ..|+++|+.-|.|.||+-.+++.++.+.+-..-|+||.-+|
T Consensus 367 ~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 367 MGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred cccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 3321110 0 00111223778864 4666655 45 88999999999999999999999999988777999999999
Q ss_pred cCceeeeccCCCCccccccCCCC
Q 012996 321 RPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 321 ~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
.-..||+++-|.-|+||...+..
T Consensus 447 ~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 447 HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred CCchhhccCCccceeeecCCccc
Confidence 99999999999999999975443
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.6e-18 Score=142.63 Aligned_cols=291 Identities=12% Similarity=0.141 Sum_probs=207.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
..|.... .|+.|.+|++...+--..+.. .+.++.... |||+|+.++..+.-+-.|.||.+.+........+...
T Consensus 62 ~ilC~~y-k~~~vqvwsl~Qpew~ckIde---g~agls~~~--WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~ 135 (447)
T KOG4497|consen 62 HILCVAY-KDPKVQVWSLVQPEWYCKIDE---GQAGLSSIS--WSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTN 135 (447)
T ss_pred eeeeeee-ccceEEEEEeecceeEEEecc---CCCcceeee--ECCCcceEeeeecceeEEEEEEeccceeEEecccccC
Confidence 3456666 899999999988777766654 446677777 9999988777776669999999999888887777888
Q ss_pred eeEEEECCCCcEEEEeccCCC---EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGD---IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+..++|+|||++.+..+.-.. +.|.......+++.+.-..-..+.+.|+|||+.|++ ||---
T Consensus 136 ~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~L------ 200 (447)
T KOG4497|consen 136 VKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVL------ 200 (447)
T ss_pred ceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchh------
Confidence 999999999999988765322 333333344566667666777889999999987664 44300
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----------------------- 216 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------- 216 (451)
...+. .......+..+.|+|.+ ++++.|+.|+.+++.+--+-++...+-
T Consensus 201 -----eykv~-aYe~~lG~k~v~wsP~~--qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 201 -----EYKVY-AYERGLGLKFVEWSPCN--QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred -----hheee-eeeeccceeEEEecccc--ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhh
Confidence 00000 11123467788899987 899999999999886532221111110
Q ss_pred --------------------------------------------cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCC
Q 012996 217 --------------------------------------------FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAE 250 (451)
Q Consensus 217 --------------------------------------------~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~ 250 (451)
..-.+.-++|++|..++++-.+. +.+.+||++..
T Consensus 273 ~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l 352 (447)
T KOG4497|consen 273 LHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL 352 (447)
T ss_pred cccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh
Confidence 01146678999999999886543 57999999885
Q ss_pred CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+ +...-....+|....|.| ...|+.+.....+++|...-...+.. ....-.|..+.|..+|.+++..+
T Consensus 353 ~----------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 353 K----------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCG 421 (447)
T ss_pred h----------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEc
Confidence 3 333334567999999999 66777777777899999765444443 33335899999999999999988
Q ss_pred CCCC
Q 012996 330 FSNP 333 (451)
Q Consensus 330 ~d~~ 333 (451)
.|..
T Consensus 422 kDaf 425 (447)
T KOG4497|consen 422 KDAF 425 (447)
T ss_pred CCce
Confidence 8764
No 196
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=1.4e-18 Score=146.80 Aligned_cols=286 Identities=17% Similarity=0.226 Sum_probs=192.8
Q ss_pred EEEeecCCCCCCeEEEECccCc------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-------
Q 012996 3 LLIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS------- 69 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~------- 69 (451)
+.||||+ .|..|++|-+..+. .+.-+.....|...|.++. |+|+|..||+++.+ |.|.+|...
T Consensus 27 ~~laT~G-~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vR--f~p~gelLASg~D~-g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 27 NKLATAG-GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVR--FSPDGELLASGGDG-GEVFLWKQGDVRIFDA 102 (434)
T ss_pred cceeccc-CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEE--EcCCcCeeeecCCC-ceEEEEEecCcCCccc
Confidence 3789999 99999999876443 3333344556778888888 99999999999998 999999865
Q ss_pred -C-----C-ce---eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996 70 -K-----P-QV---EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (451)
Q Consensus 70 -~-----~-~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 139 (451)
+ . .. .....|.+.|..++|+|++.++++|+.|..+++||+..|..+..+..|...|..++|.|-++++++
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhh
Confidence 2 1 11 122347889999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcEEEeeCcchhhhhhh----------hcccccceecccC--CcCceeEEEEeecCCeeEEEEeeC----CC----
Q 012996 140 GSEDGCVRIWSLLTVFEECES----------QRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASE----DR---- 199 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~----d~---- 199 (451)
-+.|...+.+.+......... ........+.+.. -..-...++|+|+| .++++.+. ++
T Consensus 183 ~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG--~llvtPag~~~~g~~~~~ 260 (434)
T KOG1009|consen 183 KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG--SLLVTPAGLFKVGGGVFR 260 (434)
T ss_pred hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC--cEEEcccceeeeCCceee
Confidence 999986666665321100000 0000001111111 01122345677777 67765432 22
Q ss_pred -cEEEEEcCC-Cceeeeee-cccceeEEEEC------------------CCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996 200 -TCKVWSLLK-GRLLRNIV-FPSVIDAIALD------------------PAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (451)
Q Consensus 200 -~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (451)
+.++|+-.. .++...++ ...+...+.++ |.+..+++++ ...+++||.....+
T Consensus 261 n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P------ 333 (434)
T KOG1009|consen 261 NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP------ 333 (434)
T ss_pred ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc------
Confidence 234443221 12222222 12223333333 2333455555 46799999988642
Q ss_pred ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
....-.-|-..|+.++|++ |.+|+..|.||...+--+...++-
T Consensus 334 --~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 334 --LAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred --eEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 2223344888999999999 999999999999888777665544
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.3e-18 Score=158.13 Aligned_cols=337 Identities=15% Similarity=0.121 Sum_probs=224.0
Q ss_pred eEEEeecCCCCCCeEEEECcc-CceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC
Q 012996 2 ELLIASSSVADTGIGCWDLES-GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA 80 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~ 80 (451)
|.++|+|. .||.|.+|.--. ...-.+.....=|...|.+++ |+++|.+|.+||.. |.+.+|...++...+...-.
T Consensus 217 ~~~~Aa~d-~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~--fS~~G~~LlSGG~E-~VLv~Wq~~T~~kqfLPRLg 292 (792)
T KOG1963|consen 217 ERYLAAGD-SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS--FSSDGAYLLSGGRE-GVLVLWQLETGKKQFLPRLG 292 (792)
T ss_pred cceEEEec-cCCcEEEEeccccccccccceEEEecccccceeE--EecCCceEeecccc-eEEEEEeecCCCcccccccC
Confidence 57899999 999999997432 122222223334667899999 99999999999999 99999999999977777788
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc-----------ccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
.+|..+.++||+.+.++...|..|.+....+.+...++.+ ..+-.+.++++|..+.++-.+..|.|.+|
T Consensus 293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY 372 (792)
T ss_pred CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence 9999999999999999999999999998866654444322 24456788999966778888899999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--------C--CcEEEEEcCCCc----eeeee
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------D--RTCKVWSLLKGR----LLRNI 215 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--------d--~~i~iwd~~~~~----~~~~~ 215 (451)
|+.+.................-..+...++.++.+..+ .+++|.-. | -.+++|-..... +...+
T Consensus 373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g--s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG--SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred eccccceeeeEEEEeecccCCcceeEEeeeeehhhccc--eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99663222111100000000001234456666666665 78887542 3 357788765443 22333
Q ss_pred e--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996 216 V--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 216 ~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
. |...+.+.++.+ ....+++++.||.+++|-+...+.... ...+.+...-.-|..++++++|+...-+++.+.|+
T Consensus 451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 3 555555555544 333789999999999999955432222 22334443334589999999999933566667899
Q ss_pred cEEEEeCCC-CceEEEeecCCCCeeEEEEEecCc--eeeeccCCCCccccccCCCCC
Q 012996 291 MVRVWDPIT-HNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 291 ~i~iwd~~~-~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~s~d~~i~iw~~~~~~~ 344 (451)
+|.+||..+ ..+..+...-..++..+.|..... ..+.....+.+.+|++-...+
T Consensus 531 ~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l 587 (792)
T KOG1963|consen 531 TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL 587 (792)
T ss_pred EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence 999999998 444444444344555555543221 223333456677787665544
No 198
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.82 E-value=2.6e-17 Score=147.87 Aligned_cols=322 Identities=12% Similarity=0.092 Sum_probs=202.5
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~ 81 (451)
++++++-. .+|.|.|.|..+.+.+.++...... -..+. |+|||+++.+++.| |.|.++|+.+.+.........
T Consensus 6 ~l~~V~~~-~~~~v~viD~~t~~~~~~i~~~~~~---h~~~~--~s~Dgr~~yv~~rd-g~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVER-GSGSVAVIDGATNKVVARIPTGGAP---HAGLK--FSPDGRYLYVANRD-GTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEG-GGTEEEEEETTT-SEEEEEE-STTE---EEEEE---TT-SSEEEEEETT-SEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEec-CCCEEEEEECCCCeEEEEEcCCCCc---eeEEE--ecCCCCEEEEEcCC-CeEEEEECCcccEEEEEecCC
Confidence 35666777 7999999999999999999764321 22344 89999999999887 999999999999877776677
Q ss_pred CeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcceeeeccc-------cCCeeEEEEccCCcEEEEeeC-CCcEEEeeCc
Q 012996 82 PIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE-DGCVRIWSLL 152 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~ 152 (451)
....+++++||+++++++ ..+.+.++|.++.+.+..+... ...+..+..+|....++..-. .+.|-+.|..
T Consensus 79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 889999999999998875 5789999999999998877533 346778888888775655544 4778777874
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCceeeeee-----cccceeEEEE
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIAL 226 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~ 226 (451)
.. .. .............+..|.+++ ++++. ...+..|.++|..+++....+. ++.....+ .
T Consensus 159 d~---------~~-~~~~~i~~g~~~~D~~~dpdg--ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-p 225 (369)
T PF02239_consen 159 DP---------KN-LKVTTIKVGRFPHDGGFDPDG--RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-P 225 (369)
T ss_dssp TS---------SC-EEEEEEE--TTEEEEEE-TTS--SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-E
T ss_pred cc---------cc-cceeeecccccccccccCccc--ceeeecccccceeEEEeeccceEEEEeeccccccccccccc-c
Confidence 41 11 111222233455678888887 55544 5667799999999988776654 33344443 3
Q ss_pred CCCCCEEEEEeCCCc--EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE----cCCCcEEEEeCCC
Q 012996 227 DPAEHVFYAGSRDGS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG----SEDGMVRVWDPIT 299 (451)
Q Consensus 227 ~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~----~~dg~i~iwd~~~ 299 (451)
+|....+...+..+. +-........ ......++.+.++.....+ ..+..+| ++++.+. ...++|.++|..+
T Consensus 226 hp~~g~vw~~~~~~~~~~~~ig~~~v~-v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 226 HPGFGPVWATSGLGYFAIPLIGTDPVS-VHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp ETTTEEEEEEEBSSSSEEEEEE--TTT--STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred CCCcceEEeeccccceecccccCCccc-cchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 443322222222222 2222222111 0222335677777776666 7788899 8999888 4558899999999
Q ss_pred CceEEEeecCC-CCeeEEEEEecCceeeeccCCC--CccccccCCCCCC
Q 012996 300 HNIVRMFRLAK-GPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQLP 345 (451)
Q Consensus 300 ~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~s~d~--~i~iw~~~~~~~~ 345 (451)
.+.+.++.... ..+..+.|+++|+++..+..++ .|.++|..+.+..
T Consensus 304 l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 304 LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence 98888886433 3699999999999886655443 5999998765443
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=2.1e-17 Score=138.14 Aligned_cols=300 Identities=16% Similarity=0.181 Sum_probs=202.2
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
+|..|+ .|| -++++.+.-.... ....+++..+. ..-...++|..+.+ ...++++++.............+
T Consensus 19 ~lsvGs-~~G-yk~~~~~~~~k~~-----~~~~~~~~IvE--mLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~ 89 (391)
T KOG2110|consen 19 LLSVGS-KDG-YKIFSCSPFEKCF-----SKDTEGVSIVE--MLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTS 89 (391)
T ss_pred EEEccC-CCc-eeEEecCchHHhh-----cccCCCeEEEE--eecccceeEEEecCCCceEEEEEcccCceEEEEecCCc
Confidence 455666 554 5677766543311 11234455555 44445566555554 25799999999888888878899
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---cccCCeeEEEEccCCcEEEEe--eCCCcEEEeeCcchhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISG--SEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~ 157 (451)
|.++.++. +.|+++-.+ .|+|||+++.+++.++. .+...+.++.+++.+.+++-- ...|.|.+||+.
T Consensus 90 IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~----- 161 (391)
T KOG2110|consen 90 ILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI----- 161 (391)
T ss_pred eEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc-----
Confidence 99999974 456665554 59999999999988774 345566667777677788843 336899999994
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-EEEEEcCCCceeeeee---cccceeEEEECCCCCEE
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVF 233 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l 233 (451)
....+..+..|.+++.+++|+++| .+|+|++..|+ ||++.+.+|+.+..|. ....|.+++|+|++.+|
T Consensus 162 ------nl~~v~~I~aH~~~lAalafs~~G--~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 162 ------NLQPVNTINAHKGPLAALAFSPDG--TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred ------cceeeeEEEecCCceeEEEECCCC--CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 456677788999999999999999 89999999997 6899999999999987 46789999999999999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP- 312 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~- 312 (451)
++.+..++|++|.+........ ......... .-.| ...+.+---.+.-.+||... ...+.+...+.
T Consensus 234 ~~sS~TeTVHiFKL~~~~~~~~-~~p~~~~~~--------~~~~--sk~~~sylps~V~~~~~~~R--~FAt~~l~~s~~ 300 (391)
T KOG2110|consen 234 AASSNTETVHIFKLEKVSNNPP-ESPTAGTSW--------FGKV--SKAATSYLPSQVSSVLDQSR--KFATAKLPESGR 300 (391)
T ss_pred EEecCCCeEEEEEecccccCCC-CCCCCCCcc--------cchh--hhhhhhhcchhhhhhhhhcc--ceeEEEccCCCc
Confidence 9999999999999987531110 000000000 0000 01111100011222355432 33333333332
Q ss_pred --eeEEEEEecCceeeeccCCCCccccccCC
Q 012996 313 --VNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 313 --v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+..+.-.+...++..++.||.+..+.+..
T Consensus 301 ~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 301 KNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred cceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 33333335788999999999999998764
No 200
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=7.2e-18 Score=160.90 Aligned_cols=304 Identities=16% Similarity=0.182 Sum_probs=205.2
Q ss_pred EECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-------eeee-cCCCCeeEEEEC
Q 012996 18 WDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-------EVKS-LPAEPIKPIAAN 89 (451)
Q Consensus 18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-------~~~~-~~~~~v~~~~~~ 89 (451)
|+. .|..+..+..|.+.+..+.. -++.+.++++++.| |+|++|+...-.. .... .....+.++...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~----s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAV----SSEHTSLFVSGSDD-GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeehhhhccccccceee----cCCCCceEEEecCC-ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 664 58888888777766554442 23556888888888 9999999864221 1222 246789999999
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCc-------ceeeeccc-cCCeeE-EEEcc-CCc-EEEEeeCCCcEEEeeCcchhhhh
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGR-------LLKKWHAH-YRAVTC-LVFSE-DGS-FLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~v~~-~~~~~-~~~-~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
+.+..+|+++.||.|.+.++.... .....+.+ .+.+.+ -+|.. .+. .++.+...+.|..||++...
T Consensus 1108 ~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~--- 1184 (1431)
T KOG1240|consen 1108 GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH--- 1184 (1431)
T ss_pred cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh---
Confidence 999999999999999999986521 11112222 233333 34433 333 68888889999999997632
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--cceeEEEECCC---CCEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--SVIDAIALDPA---EHVF 233 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~i~~~~~~~~---~~~l 233 (451)
...........+.|++++.++.+ ++++.|+..|.+.+||++-+.++....++ .++..++.+|- ....
T Consensus 1185 ------~~w~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1185 ------DAWRLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred ------hHHhhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceE
Confidence 22233345567899999999998 89999999999999999999988887754 56777777763 2444
Q ss_pred EEEe--CCCcEEEEEccCCCCCCCCCCc--e-eeee-e------ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 234 YAGS--RDGSIYIAALNAESPSTSSYGM--H-IIGS-L------SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 234 ~~~~--~dg~i~i~d~~~~~~~~~~~~~--~-~~~~-~------~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
++++ ..+.|.+|++.++......... . .+.. . +.+.-......+.. +.++++|+.|..|+.||....
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 4443 5678999999887542211100 0 0000 0 01122223333444 889999999999999997542
Q ss_pred ceE-----------------------------EE-------------------e--------ecCCCCeeEEEEEecC-c
Q 012996 301 NIV-----------------------------RM-------------------F--------RLAKGPVNNILVVRRP-L 323 (451)
Q Consensus 301 ~~~-----------------------------~~-------------------~--------~~~~~~v~~l~~s~~~-~ 323 (451)
... .. . ..|..+|+++++-... .
T Consensus 1337 ~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~ 1416 (1431)
T KOG1240|consen 1337 EISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQP 1416 (1431)
T ss_pred ccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCcc
Confidence 211 00 0 0566789999887644 6
Q ss_pred eeeeccCCCCccccc
Q 012996 324 YLNLGSFSNPHTSSR 338 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~ 338 (451)
+|++++.||.|++|+
T Consensus 1417 llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1417 LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred EEEEecCCCeeeecC
Confidence 889999999999995
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=6e-18 Score=138.71 Aligned_cols=242 Identities=16% Similarity=0.164 Sum_probs=189.7
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
..++|+|.+|++|+..+|++..+..|.||...... ...++..|...|++++|+|..+.|++++.|..-++|....
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-- 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-- 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC--
Confidence 45899999999999999999999999999976554 5778899999999999999999999999999999999843
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee-----eeeecccceeEEEECCCC
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL-----RNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~ 230 (451)
.....+...+..+....+++.|+|.+ +.+++|+....|.+|-+.....- ....+.+.|.++.|+|++
T Consensus 87 ------~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 87 ------GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred ------CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 14556666677789999999999998 89999999999999988654332 122356889999999999
Q ss_pred CEEEEEeCCCcEEEEEccCC----CCCCCCCC-----ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 231 HVFYAGSRDGSIYIAALNAE----SPSTSSYG-----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~----~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
-+|++|+.|+..++|..--. ++...+.+ ...+.++....+.|..+.|+| |..|+-.+.|+.+.+-|....
T Consensus 159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999999999875321 11111111 122333445568999999999 999999999999999997765
Q ss_pred c-eEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996 301 N-IVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 301 ~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d 331 (451)
. .+.......-|..++.|-.+...++. +.|
T Consensus 239 ~~~v~~~~~~~lP~ls~~~ise~~vv~a-g~~ 269 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWISENSVVAA-GYD 269 (361)
T ss_pred chhccchhhccCCceeeEeecCCceeec-CCC
Confidence 4 44555444568888888877654444 444
No 202
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=138.93 Aligned_cols=253 Identities=17% Similarity=0.251 Sum_probs=182.9
Q ss_pred eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCC
Q 012996 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSG 102 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg 102 (451)
+...++ .+...++++. |-.+++ |.++... |.|++|++.+.... ++..+...|+.+..-|++ .|.+-+.|+
T Consensus 6 P~fvLR---p~~~~v~s~~--fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~ 77 (323)
T KOG0322|consen 6 PFFVLR---PHSSSVTSVL--FQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDP 77 (323)
T ss_pred CeeEec---cccchheehh--hccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCc
Confidence 344455 3456677777 777666 6777777 99999999876644 333577889999999874 566778899
Q ss_pred CEEEEEcCCCccee--------------ee---------------------------------------ccccCCeeEEE
Q 012996 103 DIYMWEVASGRLLK--------------KW---------------------------------------HAHYRAVTCLV 129 (451)
Q Consensus 103 ~i~iwd~~~~~~~~--------------~~---------------------------------------~~~~~~v~~~~ 129 (451)
.+.+|++.-+..+. .+ .+..+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 99999875421110 00 01224455555
Q ss_pred Ecc-CCc--EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 130 FSE-DGS--FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 130 ~~~-~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
+.. ++. +++.|.++|.+.+||+.++...... ............|..+|.++.+.+.. ..=++|+.+..+..|++
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~-~~~~kv~~~~ash~qpvlsldyas~~--~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL-PQSSKVESPNASHKQPVLSLDYASSC--DRGISGGADDKLVMYSL 234 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeecc-ccccccccchhhccCcceeeeechhh--cCCcCCCccccceeeee
Confidence 433 232 4667888999999999774222111 12234455567799999999987654 45678888888999988
Q ss_pred CCC--ceee--eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996 207 LKG--RLLR--NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (451)
Q Consensus 207 ~~~--~~~~--~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 280 (451)
... .+.. .+. .+..+..+.+-||++.+++++.|++|++|..++. .++..+..|...|++++|+| .
T Consensus 235 ~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred ccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCCCC
Confidence 643 2221 112 3456888999999999999999999999999997 56788999999999999999 7
Q ss_pred CEEEEEcCCCcEEEEeC
Q 012996 281 DLLISGSEDGMVRVWDP 297 (451)
Q Consensus 281 ~~l~s~~~dg~i~iwd~ 297 (451)
.++|+++.|++|.+|++
T Consensus 306 ~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ELMAAASKDARISLWKL 322 (323)
T ss_pred chhhhccCCceEEeeec
Confidence 99999999999999986
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.8e-18 Score=141.69 Aligned_cols=282 Identities=10% Similarity=0.089 Sum_probs=203.4
Q ss_pred EEEeecCCCCCCeEEEECccC------ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996 3 LLIASSSVADTGIGCWDLESG------AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK 76 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~ 76 (451)
-.||+|+ .|..++||+++.. +++.. .++ .|...|.|++ |......+.+|+.+ ++|...|+++.+....
T Consensus 69 ~~L~SGG-DD~~~~~W~~de~~~~k~~KPI~~-~~~-~H~SNIF~L~--F~~~N~~~~SG~~~-~~VI~HDiEt~qsi~V 142 (609)
T KOG4227|consen 69 RFLASGG-DDMHGRVWNVDELMVRKTPKPIGV-MEH-PHRSNIFSLE--FDLENRFLYSGERW-GTVIKHDIETKQSIYV 142 (609)
T ss_pred eEEeecC-CcceeeeechHHHHhhcCCCCcee-ccC-ccccceEEEE--EccCCeeEecCCCc-ceeEeeecccceeeee
Confidence 4789999 9999999998633 33322 222 3557899999 99999999999998 9999999999887776
Q ss_pred ecCCC---CeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-cee--eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEe
Q 012996 77 SLPAE---PIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLK--KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIW 149 (451)
Q Consensus 77 ~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vw 149 (451)
..|.. .|+.+..+|..+.|++.+.++.|.+||.+... .+. .+.........+.|+| ...+|++.+..+-+.+|
T Consensus 143 ~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 143 ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 66644 99999999999999999999999999997654 222 2223445677889999 56788899999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeeecc-------cce
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIVFP-------SVI 221 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~-------~~i 221 (451)
|.+......-. ......+......-.+..|+++| +.+++--....-.+||+-+.++ +..+.|. ..+
T Consensus 223 D~R~~~~~~~~----~~~~~~L~~~~~~~M~~~~~~~G--~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~ 296 (609)
T KOG4227|consen 223 DRRMQARPVYQ----RSMFKGLPQENTEWMGSLWSPSG--NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTI 296 (609)
T ss_pred eeccccchHHh----hhccccCcccchhhhheeeCCCC--CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeee
Confidence 99762211100 00011122222233567888888 7888777777778889877543 3333332 245
Q ss_pred eEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC--------------CCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996 222 DAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS--------------SYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (451)
Q Consensus 222 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~ 286 (451)
.+++|-.+-. +++|+.+-.|++|.+........ ...-..+..+++|..-++.+.|+| ..+|++.
T Consensus 297 KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SS 375 (609)
T KOG4227|consen 297 KSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSS 375 (609)
T ss_pred eeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEecc
Confidence 6677765444 89999999999999865432111 011234567899999999999999 8888888
Q ss_pred cCCCcEEEEeC
Q 012996 287 SEDGMVRVWDP 297 (451)
Q Consensus 287 ~~dg~i~iwd~ 297 (451)
+-...++||..
T Consensus 376 GVE~~~KlWS~ 386 (609)
T KOG4227|consen 376 GVENSFKLWSD 386 (609)
T ss_pred chhhheecccc
Confidence 89999999974
No 204
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=2.5e-19 Score=153.71 Aligned_cols=260 Identities=16% Similarity=0.199 Sum_probs=206.1
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 125 (451)
|+.+|++++.+|.. |.|..+|+.+..+.....-.+.|..+.|-.+..++|++- ...++||| ..|..+..++.| ..|
T Consensus 137 ytrnGrhlllgGrK-GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v 212 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRK-GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRV 212 (545)
T ss_pred ecCCccEEEecCCc-cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEeehhhc-Cch
Confidence 89999999999999 999999999999988888889999999999899888854 56899999 678888888766 568
Q ss_pred eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (451)
Q Consensus 126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd 205 (451)
..+.|.|..-+|++++..|.++.-|+.+ ...+..+....+.+..++-+|-. ..+-+|...|+|.+|.
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~-----------GklVa~~~t~~G~~~vm~qNP~N--aVih~GhsnGtVSlWS 279 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVST-----------GKLVASIRTGAGRTDVMKQNPYN--AVIHLGHSNGTVSLWS 279 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeech-----------hhhhHHHHccCCccchhhcCCcc--ceEEEcCCCceEEecC
Confidence 8999999888899999999999999965 44566666677788888877766 7889999999999999
Q ss_pred cCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEE
Q 012996 206 LLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLI 284 (451)
Q Consensus 206 ~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 284 (451)
....+++..+. |.++|.++++.++|.++++.+.|..++|||++... .+.++.. ..+...+++|... ++
T Consensus 280 P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------ql~t~~t-p~~a~~ls~Sqkg-lL 348 (545)
T KOG1272|consen 280 PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------QLHTYRT-PHPASNLSLSQKG-LL 348 (545)
T ss_pred CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------ccceeec-CCCcccccccccc-ce
Confidence 99988877665 99999999999999999999999999999999863 2223322 4567788888733 44
Q ss_pred EEcCCCcEEEEe-CCCCc--eEEEeecC--CCCeeEEEEEecCceeeeccCCCC
Q 012996 285 SGSEDGMVRVWD-PITHN--IVRMFRLA--KGPVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 285 s~~~dg~i~iwd-~~~~~--~~~~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
+++....|.||. .-.+. .-..+-.| .++|.++.|.|-...|-.|-.-|.
T Consensus 349 A~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 349 ALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred eeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 445566799995 22211 11111112 458999999997766666544443
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=7.6e-18 Score=156.54 Aligned_cols=232 Identities=15% Similarity=0.122 Sum_probs=164.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcc--eeeeccccCCeeEEEEccCCc
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRL--LKKWHAHYRAVTCLVFSEDGS 135 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~ 135 (451)
..|.+||.+.........+...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~ 260 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGS 260 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCC
Confidence 79999999876655555567789999999999999887654 3699999988754 3333333 34689999999
Q ss_pred EEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCC-cee
Q 012996 136 FLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKG-RLL 212 (451)
Q Consensus 136 ~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~-~~~ 212 (451)
.|+.++ .+|.+.||.+.. ... ....+..+...+.+..|+|++ ..|+ ++..+|...||++... ...
T Consensus 261 ~La~~~~~~g~~~Iy~~d~---------~~~-~~~~lt~~~~~~~~~~wSpDG--~~i~f~s~~~g~~~I~~~~~~~~~~ 328 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGA---------NGG-TPSQLTSGAGNNTEPSWSPDG--QSILFTSDRSGSPQVYRMSASGGGA 328 (429)
T ss_pred EEEEEEecCCcEEEEEEEC---------CCC-CeEeeccCCCCcCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence 888764 688776664421 111 233455566678889999998 5554 5556788888876532 222
Q ss_pred eeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996 213 RNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM 291 (451)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~ 291 (451)
..+.+.. ....|+|+|+.|+.++.++ +.+||+.++.. . .+..+ .....+.|+| +.+|+.++.+|.
T Consensus 329 ~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~-------~---~lt~~-~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 329 SLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGST-------E---VLSST-FLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred EEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCe-------E---EecCC-CCCCCceECCCCCEEEEEEcCCC
Confidence 2222322 4578999999998887755 66699877641 1 11111 1235678999 999999999998
Q ss_pred EEEEeC--CCCceEEEeecCCCCeeEEEEEec
Q 012996 292 VRVWDP--ITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 292 i~iwd~--~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+.+|++ .++..++.+..|.+.+...+|+|-
T Consensus 395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 395 GKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 888875 468888999888888999999984
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.80 E-value=3.3e-18 Score=149.50 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=160.3
Q ss_pred CcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996 51 QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF 130 (451)
Q Consensus 51 ~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 130 (451)
..++.++.| |.+.+.+-..........|.+.+.|-.|+|||.-|++++.||.|++|. ++|.+..++-....+|.|++|
T Consensus 76 d~~~i~s~D-Gkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSND-GRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCC-ceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 345666666 888888755444445566889999999999999999999999999999 688777777777889999999
Q ss_pred ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996 131 SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (451)
Q Consensus 131 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 210 (451)
.|+.+.++-+.. +.+.|=.+ .....+.....|.+-|.++.|++.. +++++|+.|-..++||-....
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL-----------~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED~kfKvWD~~G~~ 219 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPL-----------AANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGEDFRFKIWDAQGAN 219 (737)
T ss_pred CCCCCceEEecC-CeEEEeec-----------ccccceeEEeccCcEEEEeecCccc--cceeecCCceeEEeecccCcc
Confidence 997766555433 35666555 2344556688999999999999887 899999999999999976555
Q ss_pred eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
....-.|+.+|++++|.|+ ..+++++. +..+ --....+.|..++||+ |..+++|+..
T Consensus 220 Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R--------------------~~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 220 LFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR--------------------FSSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred cccCChhccceeeeeeccc-cceeeeee-eeee--------------------ecCCCccceEEEEEcCCCceeeccccC
Confidence 5555569999999999999 55555543 2222 1112457899999999 9999999999
Q ss_pred CcEEEE
Q 012996 290 GMVRVW 295 (451)
Q Consensus 290 g~i~iw 295 (451)
|.+.+=
T Consensus 278 G~v~~A 283 (737)
T KOG1524|consen 278 GQLIVA 283 (737)
T ss_pred ceEEEe
Confidence 987653
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.1e-18 Score=148.28 Aligned_cols=198 Identities=21% Similarity=0.315 Sum_probs=157.7
Q ss_pred eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (451)
Q Consensus 126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd 205 (451)
.+++|+++|..+++++.||++|||+. +....+.....|...|.++.|+|++ .+|++.+.| ..+||+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~-----------Ps~~t~l~e~~~~~eV~DL~FS~dg--k~lasig~d-~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW-----------PSMLTILEEIAHHAEVKDLDFSPDG--KFLASIGAD-SARVWS 213 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec-----------CcchhhhhhHhhcCccccceeCCCC--cEEEEecCC-ceEEEE
Confidence 68999999999999999999999997 3455566677899999999999999 899999999 899999
Q ss_pred cCCCceeeeee---cccceeEEEECCCC-----CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996 206 LLKGRLLRNIV---FPSVIDAIALDPAE-----HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (451)
Q Consensus 206 ~~~~~~~~~~~---~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 277 (451)
..++..+.... .+.....+.|+.++ ..++.-...+.|+.|++....... .-...........|++++.
T Consensus 214 ~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~----~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 214 VNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN----FLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred eccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc----ccchhhhhhccCcceeEEE
Confidence 99996665554 34456677777766 333334455678888776543210 0112222233458999999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCCCCceEEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
++ |++++.|+.||.|.|++..+.++++.++ .|...|+.+.|+||.+++++.+.|....+-.+..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99 9999999999999999999988887665 7889999999999999999999999988887654
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=1.8e-17 Score=135.91 Aligned_cols=234 Identities=12% Similarity=0.166 Sum_probs=175.8
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
...|+|.+ |++++..+|++... ..|.||...+.+.- ....|...|++|+|+|..+.|++++.|..-+||...+
T Consensus 10 ~~pitchA--wn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 10 LEPITCHA--WNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred cCceeeee--ecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 46789999 99999999999887 89999998876622 2344788999999999999999999999999999843
Q ss_pred C---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 112 G---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 112 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
+ +....+..+....+++.|+|.++.|++|+.-..|.||-++... .=....+.-..+...|+++.|++++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-------dWWVsKhikkPirStv~sldWhpnn- 158 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-------DWWVSKHIKKPIRSTVTSLDWHPNN- 158 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-------ceehhhhhCCccccceeeeeccCCc-
Confidence 3 3444556788999999999999999999999999999885411 0111223335577899999999998
Q ss_pred eeEEEEeeCCCcEEEEEcC-----C-------------Cceeeee-ecccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 189 SATIVSASEDRTCKVWSLL-----K-------------GRLLRNI-VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~-----~-------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
-++++|+.|+.++++..- . |+.+..+ ...+.+..+.|+|+|..|+-.+.|..+.+-|...
T Consensus 159 -VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~ 237 (361)
T KOG1523|consen 159 -VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG 237 (361)
T ss_pred -ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence 799999999999998642 1 2233333 3467899999999999999999999999999877
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d 289 (451)
..+ .+.......-+..++.|-....++.++.|
T Consensus 238 p~~--------~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 238 PSE--------RVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred Cch--------hccchhhccCCceeeEeecCCceeecCCC
Confidence 642 12222222255566666543334444443
No 209
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=1.2e-17 Score=155.19 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=162.7
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEEC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~ 89 (451)
+..|.+||..... ...+.. +...+.... |+|+|+.++.++.++ ..|.+||+.++.........+....++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~---~~~~v~~p~--wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR---SSQPLMSPA--WSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-ceEecc---CCCccccce--EcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 5789999986444 444443 334566666 999999998876542 47999999887654333333445678999
Q ss_pred CCCcEEEEec-cCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccc
Q 012996 90 SHGTYIAGGG-QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 90 ~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|||+.|+.++ .+|.+.|| |+.++. ...+..+...+....|+|||+.|+.++ .+|...||++... ..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~---------~~ 326 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS---------GG 326 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC---------CC
Confidence 9999888764 57765554 665554 445566777788999999999877554 5788899987431 11
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (451)
....+ .+.. ....|+|++ +.++.++.++ +.+||+.+++...... ......+.|+|+++.|+.++.++.+.+|
T Consensus 327 -~~~~l-~~~~--~~~~~SpDG--~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 327 -GASLV-GGRG--YSAQISADG--KTLVMINGDN-VVKQDLTSGSTEVLSS-TFLDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred -CeEEe-cCCC--CCccCCCCC--CEEEEEcCCC-EEEEECCCCCeEEecC-CCCCCCceECCCCCEEEEEEcCCCceEE
Confidence 11111 2332 356788988 7777777665 6669998886543222 2234567899999999999999988888
Q ss_pred EccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
++.... ......+..|.+.+...+|+|
T Consensus 399 ~~~~~~-------G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 399 QLVSAD-------GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred EEEECC-------CCceEEccCCCCCCCCcccCC
Confidence 764321 134566777888899999998
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.7e-18 Score=143.61 Aligned_cols=195 Identities=24% Similarity=0.237 Sum_probs=149.4
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
.+++|+++|..+++|+.||.++||+..+...+.....|.+.|.++.|+|||++|++.+.| ..+||++.++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~------- 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA------- 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-------
Confidence 789999999999999999999999988888888888999999999999999999999999 999999977421
Q ss_pred cccceecc--cCCcCceeEEEEeecCCe--eEEE-EeeCCCcEEEEEcCCCce------eeeeecccceeEEEECCCCCE
Q 012996 164 SHLYLHSF--TGHTLRITDIVIGYGGVS--ATIV-SASEDRTCKVWSLLKGRL------LRNIVFPSVIDAIALDPAEHV 232 (451)
Q Consensus 164 ~~~~~~~~--~~~~~~i~~i~~~~~~~~--~~l~-s~~~d~~i~iwd~~~~~~------~~~~~~~~~i~~~~~~~~~~~ 232 (451)
+... .........+.|+.++.. -+++ .....+.|+.||+....- .+.+.....|.+++.+++|++
T Consensus 220 ----~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf 295 (398)
T KOG0771|consen 220 ----LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF 295 (398)
T ss_pred ----hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE
Confidence 1111 122334445566655421 1222 233445677766643221 112224568999999999999
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
++.|+.||.|.+++....+ .....-+.|...|+.+.|+| .+++++.+.|....+..+.
T Consensus 296 ~AlGT~dGsVai~~~~~lq--------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 296 LALGTMDGSVAIYDAKSLQ--------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeccCCcEEEEEeceee--------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999998764 33445567999999999999 9999999999888887764
No 211
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.9e-17 Score=141.53 Aligned_cols=300 Identities=12% Similarity=0.114 Sum_probs=211.8
Q ss_pred CCeEEEECccCceeeeeec---------------------CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996 13 TGIGCWDLESGAEQLRYKS---------------------CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~---------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~ 71 (451)
+.|+||+++.|+.+..+-. --.++..-+.+. .+|||+|+.++|.---.|++||+.+.
T Consensus 7 NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik--~s~DGqY~lAtG~YKP~ikvydlanL 84 (703)
T KOG2321|consen 7 NDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIK--VSPDGQYLLATGTYKPQIKVYDLANL 84 (703)
T ss_pred CceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeE--ecCCCcEEEEecccCCceEEEEcccc
Confidence 4688999887765433211 112334444455 99999998777765489999999988
Q ss_pred ceeeeecC-CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 72 QVEVKSLP-AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 72 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
.+.+.... .+.|.-.-.+.|-.-++.-..|..|.+.. .-|....+ + -...-.+++++.-..-|+.++....|.-++
T Consensus 85 SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa-k~G~hy~~-R-IP~~GRDm~y~~~scDly~~gsg~evYRlN 161 (703)
T KOG2321|consen 85 SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA-KYGRHYRT-R-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLN 161 (703)
T ss_pred eeeeeecccccceeEEEeccchhhheEeecCceeeehh-hcCeeeee-e-cCcCCccccccCCCccEEEeecCcceEEEE
Confidence 77766544 34555555565655555556677776643 22222111 1 011224566654222344445555788888
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------- 219 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------- 219 (451)
++ ...++..+....+.++++.+++.. .+|++|+.+|.|..||.++...+..+....
T Consensus 162 LE-----------qGrfL~P~~~~~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~ 228 (703)
T KOG2321|consen 162 LE-----------QGRFLNPFETDSGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAA 228 (703)
T ss_pred cc-----------ccccccccccccccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCcccccc
Confidence 84 456677777777899999998877 799999999999999999888777665322
Q ss_pred -ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEE
Q 012996 220 -VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVW 295 (451)
Q Consensus 220 -~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iw 295 (451)
.|+++.|+.+|-.+++|+.+|.++|||+++..+ .+..-.+..-+|..+.|.+ ++.+++ .....++||
T Consensus 229 ~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--------l~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiW 299 (703)
T KOG2321|consen 229 PSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--------LLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIW 299 (703)
T ss_pred CcceEEEecCCceeEEeeccCCcEEEEEcccCCc--------eeecccCCccceeeecccccCCCceEEe-cchHHhhhc
Confidence 399999999999999999999999999999763 2333334456899999987 344544 456679999
Q ss_pred eCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|-.+|+....+.. ...+..+|+-|++.+++++-.++.+..+=+.
T Consensus 300 d~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 300 DECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred ccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 9999999998876 4569999999999999999888877666554
No 212
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.1e-16 Score=141.00 Aligned_cols=308 Identities=12% Similarity=0.090 Sum_probs=202.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.++.-+ .-.+.+|+........+...+..........+ ++++|+++|.+.. +.+.|++.......+..... .+
T Consensus 4 ~~aVRs--Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~--~S~~G~lfA~~~~--~~v~i~~~~~~~~~lt~~~~-~~ 76 (566)
T KOG2315|consen 4 VYAVRS--SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFA--YSNNGRLFAYSDN--QVVKVFEIATLKVVLCVELK-KT 76 (566)
T ss_pred eEEEEc--cceeEEeccCCccccccccccCCCCCcceeEE--EcCCCcEEEEEcC--CeEEEEEccCCcEEEEeccc-ee
Confidence 344444 34688998765343333333321223333444 8999999988776 69999999888655555555 89
Q ss_pred eEEEECCCCcEEEEe-----cc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 84 KPIAANSHGTYIAGG-----GQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.++.|+|.|++|.+- .. .-.+.+|++.++.....+......-++..|++|..+.+-- ..+.+.+|++..
T Consensus 77 ~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~ 155 (566)
T KOG2315|consen 77 YDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGS 155 (566)
T ss_pred eeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCC
Confidence 999999999998752 11 2347899999865555554333333689999887654322 235788888754
Q ss_pred hhhhhhhhcccccceecccCCcCceeE----------------------------------------------------E
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITD----------------------------------------------------I 181 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------------------------------------i 181 (451)
...... .-|...|+. +
T Consensus 156 f~~~~~------------kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 156 FKTIQH------------KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred ccceee------------eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 211000 001222222 2
Q ss_pred EEeecCCeeEEEE-eeCC---------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE--eCCCcEEEEEccC
Q 012996 182 VIGYGGVSATIVS-ASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNA 249 (451)
Q Consensus 182 ~~~~~~~~~~l~s-~~~d---------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~ 249 (451)
.|.+.+.+-++++ ..-| .+++++++........+...++|.++.|+|+++-|+++ -.-..+.+||++.
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~ 303 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG 303 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC
Confidence 3333333211111 1112 24666666544444455567899999999999887764 4566899999986
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL 325 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 325 (451)
. ++.. -..++=+++.|+| |++++.+|-+ |.|-|||+.+.+++..+..... +-+.|+|||++|
T Consensus 304 ~----------~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~f 369 (566)
T KOG2315|consen 304 K----------PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYF 369 (566)
T ss_pred C----------EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEE
Confidence 3 3333 3467888999999 9999888764 7899999999999999887544 667999999999
Q ss_pred eecc------CCCCccccccCCCCCC
Q 012996 326 NLGS------FSNPHTSSRRHGSQLP 345 (451)
Q Consensus 326 ~~~s------~d~~i~iw~~~~~~~~ 345 (451)
+|++ -|+.++||...|..+.
T Consensus 370 lTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 370 LTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEeccccEEecCCeEEEEecCceee
Confidence 8877 4789999999887653
No 213
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.78 E-value=3.8e-18 Score=146.54 Aligned_cols=261 Identities=15% Similarity=0.170 Sum_probs=206.3
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.|+.|+ ..|.|..+|+.++.....+... ..|..+. |..+.+++|++-. ..+.|||-..-++.....+ ..|
T Consensus 143 hlllgG-rKGHlAa~Dw~t~~L~~Ei~v~----Etv~Dv~--~LHneq~~AVAQK--~y~yvYD~~GtElHClk~~-~~v 212 (545)
T KOG1272|consen 143 HLLLGG-RKGHLAAFDWVTKKLHFEINVM----ETVRDVT--FLHNEQFFAVAQK--KYVYVYDNNGTELHCLKRH-IRV 212 (545)
T ss_pred EEEecC-Cccceeeeecccceeeeeeehh----hhhhhhh--hhcchHHHHhhhh--ceEEEecCCCcEEeehhhc-Cch
Confidence 466777 7999999999999998887533 4455666 9999999999877 6999999776666554444 689
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|...|+|.+|.. .
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP-----------~ 281 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSP-----------N 281 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCC-----------C
Confidence 99999999999999999999999999999999999888899999999998888999999999999998 3
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIY 243 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (451)
...++..+..|.++|.++++.++| .+++|++.|..++|||++....+.++..+.+...+++|..| +++.+....+.
T Consensus 282 skePLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~ 357 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQ 357 (545)
T ss_pred CcchHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeee
Confidence 455667778899999999999999 99999999999999999998888777777788888887655 33344556788
Q ss_pred EEEccCC-CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 244 IAALNAE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 244 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
+|.=... .... ..........++|..+.|.| .+.|-.|...|.-.+
T Consensus 358 iw~d~~~~s~~~-----~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 358 IWKDALKGSGHG-----ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI 405 (545)
T ss_pred eehhhhcCCCCC-----CcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence 8843222 1100 11111111235899999999 888877766664333
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=1.7e-16 Score=151.71 Aligned_cols=265 Identities=12% Similarity=0.110 Sum_probs=184.6
Q ss_pred EECCCCceeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEccCCcEE
Q 012996 66 WSWSKPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 66 w~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
|+.....+.....|...|..++.++.. .++++|+.||+|++|+.+.- +...++..-...+.++...+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 554444444445577788888887754 99999999999999998642 2233344456788999999999999
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEE-EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDI-VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 215 (451)
|.++.||.|.+.++....... ........... ..+.+.++ ++........++.+..-+.|..||++.......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~----~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSK----RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred EEEcCCCeEEEEEcccccccc----ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 999999999999986521100 00111111111 22334444 3333333247888889999999999988777666
Q ss_pred e---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--C--CEEEEEcC
Q 012996 216 V---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--G--DLLISGSE 288 (451)
Q Consensus 216 ~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~~l~s~~~ 288 (451)
+ ..+.|++++.+|.+.++++|+..|.+.+||++-+.+. ..--..+..++..+..+| + ...++++.
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i--------~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI--------LSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee--------ecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 5 3578999999999999999999999999999986421 112234557888888888 4 56666654
Q ss_pred --CCcEEEEeCCCCceEEEeecCC-----------------C--CeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 289 --DGMVRVWDPITHNIVRMFRLAK-----------------G--PVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 289 --dg~i~iwd~~~~~~~~~~~~~~-----------------~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.+-|.+|++.+|.+-.++-... . +.....+...+.++.+|+.|+.|+.||....
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 6779999999987766654321 1 1222333445578899999999999997644
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.5e-16 Score=129.29 Aligned_cols=235 Identities=15% Similarity=0.259 Sum_probs=167.9
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC--eeEEEEccCCcEEE-EeeCC------CcEEEeeCc
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--VTCLVFSEDGSFLI-SGSED------GCVRIWSLL 152 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-s~~~d------g~i~vwd~~ 152 (451)
...+++|+.|...+++|..+| .+||+++.-+.....+.+.+. +.-+-|- .++|+ +||.+ ..|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD- 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDD- 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEec-
Confidence 455699999999999988776 899998764433222222222 2223332 33444 34333 46999993
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeee---cccceeEEEECC
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIV---FPSVIDAIALDP 228 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~---~~~~i~~~~~~~ 228 (451)
....++..+. ...+|.++.+..+ .|++. ..+.|++|.+. +.+.++.+. .+....+++-..
T Consensus 83 ----------~k~~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 83 ----------LKERCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ----------ccCcEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 2334444444 5678999998776 33333 46789999988 556666665 344444444333
Q ss_pred CCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCc-EEEEeCCCCceEEE
Q 012996 229 AEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGM-VRVWDPITHNIVRM 305 (451)
Q Consensus 229 ~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~ 305 (451)
+..+|+. |..-|.|.+-|+..... .....+.+|.+.|.|++.+. |..+||+|..|+ |||||..+|+++.+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~-------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E 219 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKP-------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE 219 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCc-------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee
Confidence 5555554 45668999999987652 12456789999999999999 999999999998 89999999999999
Q ss_pred eecC--CCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 306 FRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 306 ~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
++.. ...|.+++|||++.+||++|+-|++.|+.++...
T Consensus 220 ~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 220 LRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9843 3479999999999999999999999999988644
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=9.1e-17 Score=141.04 Aligned_cols=222 Identities=22% Similarity=0.270 Sum_probs=164.0
Q ss_pred ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEE
Q 012996 114 LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+...+.+|.+.|+|+.|+.+|.+|++|+.|-.+.|||.- ..++++. -.+|...|.++.|-|...+.++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----------~~KllhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----------EYKLLHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecch-----------hcceeeeeecccccceeEEeeeccCCCeEE
Confidence 345678999999999999999999999999999999983 3334443 4689999999999998887999
Q ss_pred EEeeCCCcEEEEEcCCC----------ceeeeee-cccceeEEEECCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCC-c
Q 012996 193 VSASEDRTCKVWSLLKG----------RLLRNIV-FPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPSTSSYG-M 259 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~----------~~~~~~~-~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~ 259 (451)
++|..|..|+++|+... .....+. |...|..++..|++ ..+.+++.||.|+.||++.......... .
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 99999999999999742 1222222 66778889999988 8899999999999999998543222111 1
Q ss_pred eeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC--------Cc----------eEEEee-cCC--------
Q 012996 260 HIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT--------HN----------IVRMFR-LAK-------- 310 (451)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~~-~~~-------- 310 (451)
..+..+...--...++.++| ..+|++|+.|--.++||.+. +. ++..+. +|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 11122222234567899999 78999999999999999421 11 222222 222
Q ss_pred ---CCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 311 ---GPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 311 ---~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
..++-+.|+|+|.-|...-....|+++++...+.+.
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 126778899999887776666678899988665543
No 217
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.76 E-value=4.7e-17 Score=134.03 Aligned_cols=282 Identities=13% Similarity=0.108 Sum_probs=191.3
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceeeeccccCC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKKWHAHYRA 124 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 124 (451)
|||+|+++|+.+. ..+.|-|..+-++......-+.|..+.|..|.-+++++ ..++.|.+|++...+-...+.....+
T Consensus 16 fSp~g~yiAs~~~--yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag 93 (447)
T KOG4497|consen 16 FSPCGNYIASLSR--YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG 93 (447)
T ss_pred ECCCCCeeeeeee--eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc
Confidence 9999999999887 58888888887766555556788999999888776655 66789999999998888888888899
Q ss_pred eeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----
Q 012996 125 VTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----- 198 (451)
Q Consensus 125 v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d----- 198 (451)
+..++|+|||+.++ +...|-.|.+|.+.+. .. ..+.-....+..++|++++ ++.+.++.-
T Consensus 94 ls~~~WSPdgrhiL~tseF~lriTVWSL~t~---------~~---~~~~~pK~~~kg~~f~~dg--~f~ai~sRrDCkdy 159 (447)
T KOG4497|consen 94 LSSISWSPDGRHILLTSEFDLRITVWSLNTQ---------KG---YLLPHPKTNVKGYAFHPDG--QFCAILSRRDCKDY 159 (447)
T ss_pred ceeeeECCCcceEeeeecceeEEEEEEeccc---------ee---EEecccccCceeEEECCCC--ceeeeeecccHHHH
Confidence 99999999996655 6666889999999652 11 1111122234556666665 444443321
Q ss_pred -------------------------------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 012996 199 -------------------------------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (451)
Q Consensus 199 -------------------------------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (451)
..+.+||---.-.+..+...-.+..++|+|.+++|++|+.|+.+++.+-
T Consensus 160 v~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 160 VQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred HHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 2234454322112222233457888999999999999999999888543
Q ss_pred cCCCCC-----------------------------------CC------------CC----------CceeeeeeccCCc
Q 012996 248 NAESPS-----------------------------------TS------------SY----------GMHIIGSLSDHSK 270 (451)
Q Consensus 248 ~~~~~~-----------------------------------~~------------~~----------~~~~~~~~~~~~~ 270 (451)
-+-++. .. .+ ..++...+.....
T Consensus 240 ~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~ 319 (447)
T KOG4497|consen 240 FTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKC 319 (447)
T ss_pred eeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccc
Confidence 221110 00 00 0000111112234
Q ss_pred ceeEEEEec-CCEEEEEcC--CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 271 AVTCLAYST-GDLLISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.+.-++|++ ..+++|-.+ -+.+.+||+...+....+. ...+|....|+|.-..|+.+.....+++|...+...
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 567799999 666666533 2569999998776555443 367999999999998898888888899999887543
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-15 Score=126.18 Aligned_cols=269 Identities=16% Similarity=0.220 Sum_probs=177.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee---------
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE--------- 74 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~--------- 74 (451)
.+|++. .|-+|++||-.. ++...++. .....|+|++ |-|.+..-++.+.. +.|.+|..+.....
T Consensus 112 ~fava~-nddvVriy~kss-t~pt~Lks--~sQrnvtcla--wRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~ 184 (445)
T KOG2139|consen 112 AFAVAT-NDDVVRIYDKSS-TCPTKLKS--VSQRNVTCLA--WRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMST 184 (445)
T ss_pred hhhhhc-cCcEEEEeccCC-CCCceecc--hhhcceeEEE--eccCCcceeeeeec-ceeEEEEcCcccccccccccccc
Confidence 367788 899999999665 55555543 3457899999 99976654444444 89999987632211
Q ss_pred -----eeecCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEE
Q 012996 75 -----VKSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148 (451)
Q Consensus 75 -----~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 148 (451)
.+.....+|+++.|.+||..+++++. |..|.|||..++..+.......+.++-+.||||+.+|++++-|+..++
T Consensus 185 ~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrl 264 (445)
T KOG2139|consen 185 HHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRL 264 (445)
T ss_pred cchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeee
Confidence 11112468999999999999998875 567999999999877665455678889999999999999999999999
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-------------eeee
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------------LRNI 215 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------~~~~ 215 (451)
|.... ...... ..--++.|...+|+|.|. .+|++++..-.++-..+..... +..+
T Consensus 265 w~e~q----------~wt~er-w~lgsgrvqtacWspcGs-fLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL 332 (445)
T KOG2139|consen 265 WQENQ----------SWTKER-WILGSGRVQTACWSPCGS-FLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADL 332 (445)
T ss_pred ehhcc----------cceecc-eeccCCceeeeeecCCCC-EEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccc
Confidence 96532 111111 222345899999999985 5566666555444333221110 0001
Q ss_pred e----------cccceeEEEECCCCCEEEEEeCCC--------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996 216 V----------FPSVIDAIALDPAEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (451)
Q Consensus 216 ~----------~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 277 (451)
. ..+.+.+++|+|.|.+|++....+ .|.+||.+..... .........+ .....++|
T Consensus 333 ~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v----els~cg~i~g--e~P~~IsF 406 (445)
T KOG2139|consen 333 QEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV----ELSYCGMIGG--EYPAYISF 406 (445)
T ss_pred hhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce----EEEecccccC--CCCceEEe
Confidence 0 135788999999999999976554 3666777654211 0011111111 22455667
Q ss_pred ec----CCEEEEEcCCCcEEEEeC
Q 012996 278 ST----GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 278 ~~----~~~l~s~~~dg~i~iwd~ 297 (451)
+| +.+|..+=..|.+.-|++
T Consensus 407 ~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 407 GPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred eecccCCcEEEEEeccCceEeeee
Confidence 66 556666666677766664
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=6.2e-16 Score=135.53 Aligned_cols=246 Identities=17% Similarity=0.194 Sum_probs=173.7
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee----eccccCCeeEEEE-----ccCCcEEEEeeCCCcEEEeeCcc
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK----WHAHYRAVTCLVF-----SEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~-----~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
+....++-.|.+|+-.- ...+++|+.+.+..+.. ..-.....+|-.| .|.+--++.|-.-|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 44444555666665532 34689998875432211 1001122334444 34566688888889999998854
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--------------C----------
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--------------G---------- 209 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--------------~---------- 209 (451)
..- ..............|+++.|-+.++ ..++.+-.+|.+++||..- +
T Consensus 205 ~~~-------sklfne~r~i~ktsvT~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 205 FEV-------SKLFNEERLINKSSVTCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred hHH-------HHhhhhcccccccceEEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeec
Confidence 110 0000111112347899999999876 6777888999999997531 0
Q ss_pred ----ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE
Q 012996 210 ----RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL 283 (451)
Q Consensus 210 ----~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l 283 (451)
.++..+. ..+.|+..+|+|||++||+.+.||.++|||+.+. +++..++..-+...|++||| |+||
T Consensus 277 k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 277 KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhccceEEEEEcCCccEE
Confidence 0111111 2457889999999999999999999999999986 44556666678899999999 9999
Q ss_pred EEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-------------------------------------------
Q 012996 284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR------------------------------------------- 320 (451)
Q Consensus 284 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~------------------------------------------- 320 (451)
++|++|..|.||.+..++.+..-.+|++.|+.++|.|
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~ 427 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF 427 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence 9999999999999999999999999999999999983
Q ss_pred -----cCceeeeccCCCCccccccCCCCCCC
Q 012996 321 -----RPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 321 -----~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
..-.|.+.+.|..+++||+....+.+
T Consensus 428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 428 NRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred ccccceEEEeecccccceEEEEecchhhccc
Confidence 01246778889999999987655543
No 220
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.4e-17 Score=152.99 Aligned_cols=255 Identities=20% Similarity=0.274 Sum_probs=183.4
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
.+|-++|.|.. |...|.++++++.| ..++||..++..+... .+|.+.|+.++.+.++.++++++.|..|++|.+.+
T Consensus 187 lgH~naVyca~--fDrtg~~Iitgsdd-~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 187 LGHRNAVYCAI--FDRTGRYIITGSDD-RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred Hhhhhheeeee--eccccceEeecCcc-ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 35778899999 99999999999988 9999999988876644 56899999999999999999999999999999999
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc-hhhhh--hhhcccccceec----------cc------
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT-VFEEC--ESQRASHLYLHS----------FT------ 172 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~--~~~~~~~~~~~~----------~~------ 172 (451)
+.++..+.+|.+.|++++|+|-. +.+.||++++||.+- ...-. ............ ..
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999999854 778899999999871 00000 000000000000 00
Q ss_pred CCcCceeEEEEeecC---------CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC-CCCEEEEEeCCCc
Q 012996 173 GHTLRITDIVIGYGG---------VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGS 241 (451)
Q Consensus 173 ~~~~~i~~i~~~~~~---------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~ 241 (451)
...-....++|.... .+.+.+++-.+-.+++|++.+|...+... |...+..+.++| +.....+++.||.
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgs 419 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGS 419 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCc
Confidence 000001111111111 01234444456678889998888777665 788899999999 5556668899999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
..|||+-.+.+. .....+| ..+..-.||+ |..++....-|.+.|.....++..
T Consensus 420 t~iwdi~eg~pi--------k~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 420 TIIWDIWEGIPI--------KHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred eEeeecccCCcc--------eeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 999999887532 1222444 5666678999 888888888899999876655443
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.3e-15 Score=138.56 Aligned_cols=233 Identities=15% Similarity=0.077 Sum_probs=158.1
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.+||.+.........+...+.+.+|+|||+.|+..+. +..|++|++.+++.... ....+.+..+.|+|||+.|
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 5799999887665555556678999999999999886542 34699999988754322 2223334568999999988
Q ss_pred EEe-eCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCc--EEEEEcCCCce
Q 012996 138 ISG-SEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRT--CKVWSLLKGRL 211 (451)
Q Consensus 138 ~s~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~ 211 (451)
+.. +.+| .|.+||+.++ . ...+..+...+....|+|++ +.|+..+. ++. |+++|+.++..
T Consensus 258 a~~~~~~g~~~I~~~d~~tg-----------~-~~~lt~~~~~~~~~~wSPDG--~~I~f~s~~~g~~~Iy~~d~~~g~~ 323 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASG-----------Q-IRQVTDGRSNNTEPTWFPDS--QNLAYTSDQAGRPQVYKVNINGGAP 323 (429)
T ss_pred EEEEcCCCCcEEEEEECCCC-----------C-EEEccCCCCCcCceEECCCC--CEEEEEeCCCCCceEEEEECCCCCe
Confidence 754 4454 4888898542 1 22233344567788999998 66665554 444 45557766654
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
..............|+|+|++++..+.+ ..|++||+.++.. . .+.. ........|+| |.+|+.++
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~---~Lt~-~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-------Q---VLTD-TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-------E---EeCC-CCCCCCceECCCCCEEEEEE
Confidence 3322234455678999999998876543 3588889877531 1 2221 12234678999 99999988
Q ss_pred CCCc---EEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 288 EDGM---VRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 288 ~dg~---i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
.++. +.++++ ++.....+..|.+.+...+|+|
T Consensus 393 ~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 393 SQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred cCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 7764 677776 5666777888888899999987
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.6e-15 Score=126.61 Aligned_cols=246 Identities=17% Similarity=0.187 Sum_probs=163.9
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCC----
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASG---- 112 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~---- 112 (451)
+..++ |++.-..+|+++.| ..|++|+-+..... .+......|+|++|-|. +..|++|+..| |.+|.....
T Consensus 101 lr~~a--WhqH~~~fava~nd-dvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 101 LRGVA--WHQHIIAFAVATND-DVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred eeeEe--echhhhhhhhhccC-cEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 44556 88877778888888 99999997764333 33445789999999994 56788888754 999986422
Q ss_pred cc----------eeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 113 RL----------LKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 113 ~~----------~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
.. +....+| .+|++++|.+||..+++++. |..|.|||..++ ...++. ....+.++-+
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg---------~~~pL~--~~glgg~slL 244 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG---------QKIPLI--PKGLGGFSLL 244 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC---------Cccccc--ccCCCceeeE
Confidence 11 1112344 78999999999999998876 568999999762 222222 2345677889
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH 260 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 260 (451)
.|+|++ .++++++-|+..++|+.. +....+-.-..+.|...+|+|+|++|+..+. |.
T Consensus 245 kwSPdg--d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gs------------------- 302 (445)
T KOG2139|consen 245 KWSPDG--DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GS------------------- 302 (445)
T ss_pred EEcCCC--CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CC-------------------
Confidence 999999 899999999999999544 3333333446679999999999988765442 11
Q ss_pred eeeeeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996 261 IIGSLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 261 ~~~~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d 331 (451)
..++++.|.. ...+. .++......+-|+..-....--+...+++.+++|+|.|.+||+.-..
T Consensus 303 ---------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 303 ---------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred ---------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 2233444433 11111 33333344444543211111112235789999999999999986443
No 223
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5e-15 Score=137.56 Aligned_cols=236 Identities=17% Similarity=0.176 Sum_probs=155.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.++|.+.........+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 46778887655544444567789999999999999876643 359999998886543 33334556789999999887
Q ss_pred E-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEc--CCCceee
Q 012996 138 I-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSL--LKGRLLR 213 (451)
Q Consensus 138 ~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~--~~~~~~~ 213 (451)
+ +.+.+|...+|.+.. ... ....+..+........|+|++ +.|+..+ .+|...+|.+ .++....
T Consensus 255 a~~~~~~g~~~Iy~~d~---------~~~-~~~~lt~~~~~~~~~~wSpDG--~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 255 AVALSRDGNSQIYTVNA---------DGS-GLRRLTQSSGIDTEPFFSPDG--RSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred EEEEccCCCceEEEEEC---------CCC-CcEECCCCCCCCcCeEEcCCC--CEEEEEecCCCCcEEEEEECCCCceEE
Confidence 6 567788877776532 111 123344455556677899998 5655444 4566666654 4444322
Q ss_pred eeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 214 NIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
...........+|+|+|++++..+.++ .|++||+.++.. . .+..+ .......|+| ++.|+.++.+
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~-------~---~lt~~-~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV-------T---ALTDT-TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe-------E---EccCC-CCccCceECCCCCEEEEEEec
Confidence 222233345678999999998776654 699999987541 1 22211 2346779999 8887777654
Q ss_pred C---cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 290 G---MVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 290 g---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+ .+.+.++ ++.....+..+.+.+...+|+|-
T Consensus 392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 4 3555566 46666677767778888888873
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.4e-17 Score=138.94 Aligned_cols=259 Identities=17% Similarity=0.194 Sum_probs=195.7
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-ccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcch
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
.|.+.|..|.|+..|..|++|+.|..|.+||...+.....+ .+|...|..-.|-| +.+.+++++.||.+++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 47899999999999999999999999999999998877666 67888888888888 5577999999999999877431
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee----ccc---ceeEEEEC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV----FPS---VIDAIALD 227 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~---~i~~~~~~ 227 (451)
........+..|.++|.-++.-|+.. ..|.+++.|+.+.-+|++.+.+-..+. ... ...+++..
T Consensus 220 --------~~~e~t~rl~~h~g~vhklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 220 --------GYVENTKRLAPHEGPVHKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred --------cceecceecccccCccceeeecCCCC-CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 22223456778999999999988775 789999999999999999876544443 222 57789999
Q ss_pred CCCC-EEEEEeCCCcEEEEEccCCCCCCCCC---CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--C
Q 012996 228 PAEH-VFYAGSRDGSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--H 300 (451)
Q Consensus 228 ~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--~ 300 (451)
|... .+++|+.|-.+++||.+.-....... .+.+-.-.......|++++|+. +.-|+++-.|-.|+++.-.. |
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 9554 89999999999999987743221110 1111111123346799999997 66666667788899995432 2
Q ss_pred ----------ceEEE-eecCCC--CeeEEEE-EecCceeeeccCCCCccccccCCCCCC
Q 012996 301 ----------NIVRM-FRLAKG--PVNNILV-VRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 301 ----------~~~~~-~~~~~~--~v~~l~~-s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
..+.. +++|.. .|..+-| -|...|+++||.-|.|.||+.++.++.
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 22333 677765 5777765 488999999999999999999987654
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=3.2e-14 Score=117.06 Aligned_cols=227 Identities=19% Similarity=0.242 Sum_probs=156.2
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC------CccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------~g~i~vw~~~~~~~~~~~ 77 (451)
.++.|. |...+||+++.-+...+.+.. ..++..+. ..--.+++|..|.. ...|.|||-.........
T Consensus 19 cFava~--~~Gfriyn~~P~ke~~~r~~~---~~G~~~ve--MLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el 91 (346)
T KOG2111|consen 19 CFAVAT--DTGFRIYNCDPFKESASRQFI---DGGFKIVE--MLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL 91 (346)
T ss_pred eEEEEe--cCceEEEecCchhhhhhhccc---cCchhhhh--HhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE
Confidence 345555 667899998764443222222 22222222 22233444433322 158999996566666666
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeecccc--CCeeEEEEccCCcEEEE-eeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHY--RAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~ 153 (451)
....+|.++.+.++ .|++.- .+.|+||... +.+.++.+.... ....+++-+.+..+|+. |-.-|.|.|-|+..
T Consensus 92 ~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 92 SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 66789999999864 455544 4689999987 446666553222 22333333334444554 33468999999955
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-EEEEEcCCCceeeeee---cccceeEEEECCC
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-CKVWSLLKGRLLRNIV---FPSVIDAIALDPA 229 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~ 229 (451)
. .......+..|...|.+++.+..| ..++|+|..|+ |||||..+|..+..+. ....|.+++|+|+
T Consensus 169 ~---------~~~~p~~I~AH~s~Iacv~Ln~~G--t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 169 T---------KPNAPSIINAHDSDIACVALNLQG--TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred c---------CcCCceEEEcccCceeEEEEcCCc--cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 2 111345678899999999999988 89999999997 7899999999999987 4678999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCC
Q 012996 230 EHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
..+|+++++.|++++|.++...
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999997743
No 226
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=7.3e-16 Score=135.09 Aligned_cols=220 Identities=10% Similarity=0.158 Sum_probs=155.8
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceee-----eecCCCCeeEEEE-----CCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEV-----KSLPAEPIKPIAA-----NSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-----~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
++-.|.+|+-.-. ..+.+|+........ +........|-+| .|.+--++.|-.-|.|.+.|....+..
T Consensus 131 ~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~s 208 (636)
T KOG2394|consen 131 QSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVS 208 (636)
T ss_pred ccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHH
Confidence 4444555444333 478888877432221 1122334455555 345667888888899999987663332
Q ss_pred eeec----cccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhh-----------------hcccccceecccC
Q 012996 116 KKWH----AHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECES-----------------QRASHLYLHSFTG 173 (451)
Q Consensus 116 ~~~~----~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----------------~~~~~~~~~~~~~ 173 (451)
+.+. -....|+|+.|-| +...++.+-.+|.+.+||..-....... ......++..+.-
T Consensus 209 klfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~ 288 (636)
T KOG2394|consen 209 KLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI 288 (636)
T ss_pred HhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe
Confidence 2221 1347899999999 5566777788999999987321111000 0011123333344
Q ss_pred CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996 174 HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (451)
Q Consensus 174 ~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (451)
-.+.|..++|++++ .+|++.+.||.++|||+.+.+++..+. .-+...|++|+|||+++++|+.|..|.+|.+...
T Consensus 289 ~~g~in~f~FS~DG--~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-- 364 (636)
T KOG2394|consen 289 GEGSINEFAFSPDG--KYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-- 364 (636)
T ss_pred ccccccceeEcCCC--ceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--
Confidence 45688899999988 999999999999999999888777666 5678999999999999999999999999999886
Q ss_pred CCCCCCceeeeeeccCCcceeEEEEe
Q 012996 253 STSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
+.+..-++|..+|+.++|.
T Consensus 365 -------RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 -------RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -------eEEEeccccccceeeEeec
Confidence 6788889999999999998
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=9.8e-15 Score=135.47 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=156.7
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--CccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAANS 90 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~ 90 (451)
..|.+||...+.. +.+.. +...+.... |+|+|+.++..+.. +..|.+|++.+++........+.+....|+|
T Consensus 179 ~~l~~~d~dg~~~-~~lt~---~~~~~~~p~--wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHR---SPQPLMSPA--WSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC-EEeec---CCCceeeeE--EcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 3699999875443 33332 234566666 99999999865422 2579999998876554444445567889999
Q ss_pred CCcEEEEe-ccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC-CcEEEe--eCcchhhhhhhhccc
Q 012996 91 HGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-GCVRIW--SLLTVFEECESQRAS 164 (451)
Q Consensus 91 ~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vw--d~~~~~~~~~~~~~~ 164 (451)
||+.|+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ +...+| |+.++
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---------- 321 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---------- 321 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----------
Confidence 99988764 4444 49999998876544 33344567889999999988766654 455555 44321
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCc
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
....+..+........|+|++ ++++..+.+ ..|.+||+.++... .+..........|+|+|+.|+.++.++.
T Consensus 322 --~~~~lt~~~~~~~~~~~SpDG--~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 322 --APQRITWEGSQNQDADVSSDG--KFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred --CeEEeecCCCCccCEEECCCC--CEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCC
Confidence 112222233445567899988 666665433 35888999887643 3332223456789999999999887764
Q ss_pred ---EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 242 ---IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 242 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
++++++.... ...+.+|.+.+...+|+|
T Consensus 397 ~~~l~~~~~~G~~----------~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 397 GSVLNLVSTDGRF----------KARLPATDGQVKFPAWSP 427 (429)
T ss_pred ceEEEEEECCCCC----------eEECccCCCCcCCcccCC
Confidence 6777775532 445667788888888887
No 228
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.6e-15 Score=125.86 Aligned_cols=228 Identities=16% Similarity=0.206 Sum_probs=165.5
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEccC-CcEEEEeeCC--CcEEEeeCc
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSED-GSFLISGSED--GCVRIWSLL 152 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d--g~i~vwd~~ 152 (451)
..+|..++.. ...|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-++. ...+++||.. ..+.+||+.
T Consensus 105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 4455555554 3457777889999999988543 23333333 45666666664 4456668888 789999997
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECCCC
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAE 230 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~ 230 (451)
+..............+. -.-+-.++++.|.+......|++++.-+.+++||.+.+ +++..+. ...+++++...|.+
T Consensus 182 ~~~qiw~aKNvpnD~L~--LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLG--LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cceeeeeccCCCCcccc--ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 64221111111100000 01233567788888744489999999999999999876 4666676 67899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
+++++|...|.+..||++.+. .....+.+..+.|+++..+| ..+++++|-|..|||+|+.+.+++.....
T Consensus 260 n~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv- 330 (412)
T KOG3881|consen 260 NFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV- 330 (412)
T ss_pred cEEEEecccchhheecccCce--------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-
Confidence 999999999999999999974 33445888899999999999 89999999999999999999887776543
Q ss_pred CCCeeEEEEEec
Q 012996 310 KGPVNNILVVRR 321 (451)
Q Consensus 310 ~~~v~~l~~s~~ 321 (451)
...+++|.+.++
T Consensus 331 Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 KSRLTFILLRDD 342 (412)
T ss_pred hccccEEEecCC
Confidence 456777777654
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.1e-15 Score=127.26 Aligned_cols=246 Identities=10% Similarity=0.129 Sum_probs=185.1
Q ss_pred CCCeeEEEECCCCc--EEEEeccCCCEEEEEcCCCcceeee------ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 80 AEPIKPIAANSHGT--YIAGGGQSGDIYMWEVASGRLLKKW------HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 80 ~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
...|..++|..+++ .+...+.+-.+..+.+....+...+ ....++|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45788888865543 3444446666777776665544432 3445677777665 346888899999999998
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC--CcEEEEEcCCCceeeeee----------ccc
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--RTCKVWSLLKGRLLRNIV----------FPS 219 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~----------~~~ 219 (451)
..+.. ....+..+..+ ..+..+.-++... .++++|+.. ..+.+||+...+.+..-. .+-
T Consensus 133 k~~d~-------hss~l~~la~g-~g~~~~r~~~~~p-~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPv 203 (412)
T KOG3881|consen 133 KSGDL-------HSSKLIKLATG-PGLYDVRQTDTDP-YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPV 203 (412)
T ss_pred cCCcc-------ccccceeeecC-CceeeeccCCCCC-ceEecCchhcccceeeeecccceeeeeccCCCCccccceeee
Confidence 64211 01112222222 3344444444332 677789988 889999998876555432 234
Q ss_pred ceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 220 VIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 220 ~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
.++++.|-|. ...|++++.-+.+++||.+.+. +++..+.-...+++++...| ++++++|..-|.+..||
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR--------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD 275 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR--------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFD 275 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccC--------cceeEeccccCcceeeeecCCCcEEEEecccchhheec
Confidence 5778889887 8899999999999999999875 77778888889999999999 99999999999999999
Q ss_pred CCCCceEEE-eecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 297 PITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 297 ~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.+.++.+.. +.+..+.|++|..+|.+++||+++-|..+||+|+.+..+
T Consensus 276 ~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 276 LRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999998887 888899999999999999999999999999999998444
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1e-14 Score=136.01 Aligned_cols=233 Identities=17% Similarity=0.113 Sum_probs=157.1
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.+||...........+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.+...+..|+|||+.|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 57999998766555555566789999999999999887643 459999998876533 33344455678999999877
Q ss_pred E-EeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCc--EEEEEcCCCce
Q 012996 138 I-SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT--CKVWSLLKGRL 211 (451)
Q Consensus 138 ~-s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~--i~iwd~~~~~~ 211 (451)
+ +.+.+| .|.+||+.++ . ...+..+.......+|++++ +.|+.++ .+|. |+++|+.+++.
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g-----------~-~~~lt~~~~~~~~~~~spDG--~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSR-----------Q-LTRLTNHFGIDTEPTWAPDG--KSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred EEEEeCCCCceEEEEECCCC-----------C-eEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCe
Confidence 5 445555 5888998542 1 23344454455678899988 6666554 4554 66677766654
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.............+|+|+|++++..+.++ .|++||+.++.. . .+. +........|+| +++++..+
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-------~---~Lt-~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-------R---TLT-PGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-------E---ECC-CCCCCCCceECCCCCEEEEEE
Confidence 33222333455789999999998765443 689999876531 1 222 222345678999 88777766
Q ss_pred CC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 288 ED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 288 ~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
.+ +.|.++++. +.....+..+.+.+...+|+|
T Consensus 398 ~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 398 REGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 53 358888874 555666666667788888876
No 231
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.69 E-value=2e-14 Score=125.54 Aligned_cols=279 Identities=14% Similarity=0.169 Sum_probs=183.3
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---------------
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------------- 101 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------- 101 (451)
-.+..+. |||.|.+|++... ..|.+|............| ..|..+.|+|.++||.+-+..
T Consensus 33 ~p~~~~~--~SP~G~~l~~~~~--~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 33 WPVAYVS--ESPLGTYLFSEHA--AGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cchhhee--ecCcchheehhhc--cceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4455556 9999999999888 5899999887775444444 679999999999999986543
Q ss_pred CCEEEEEcCCCcceeeeccccCC--ee-EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 102 GDIYMWEVASGRLLKKWHAHYRA--VT-CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 102 g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
..+.+||+.+|..+..+.....+ .+ -+.|+-++++++-... ..+.|+++..... ..+.+.+. ...|
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~--------~~p~~~lr--~~gi 176 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIE--------EHPFKNLR--PVGI 176 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccc--------cCchhhcc--ccce
Confidence 34999999999999998776655 55 6889988888775533 3799999622100 11111111 2345
Q ss_pred eEEEEeecCCeeEEEE-----eeCCCcEEEEEcCCCceeeeee-------------------------------------
Q 012996 179 TDIVIGYGGVSATIVS-----ASEDRTCKVWSLLKGRLLRNIV------------------------------------- 216 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s-----~~~d~~i~iwd~~~~~~~~~~~------------------------------------- 216 (451)
....|+|.++...|+. .+.++.+++|.+..++.+....
T Consensus 177 ~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn 256 (561)
T COG5354 177 LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN 256 (561)
T ss_pred eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce
Confidence 5555665543333332 3445566666665443332222
Q ss_pred ----------------cccceeEEEECCCCCEEEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996 217 ----------------FPSVIDAIALDPAEHVFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 217 ----------------~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
..++|...+|.|.++.+++.+ .+-.+.++|++..- .+......=+.+.|+
T Consensus 257 Lyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl------------~~~~Pe~~rNT~~fs 324 (561)
T COG5354 257 LYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL------------RFYFPEQKRNTIFFS 324 (561)
T ss_pred EEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce------------EEecCCccccccccc
Confidence 234566666666555554433 44556666665531 222234455667899
Q ss_pred c-CCEEEEEcCC---CcEEEEeCCCCceEE-EeecCCCCeeEEEEEecCceeeecc------CCCCccccccCCCCCC
Q 012996 279 T-GDLLISGSED---GMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS------FSNPHTSSRRHGSQLP 345 (451)
Q Consensus 279 ~-~~~l~s~~~d---g~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~s------~d~~i~iw~~~~~~~~ 345 (451)
| +++++.++-| |.|-+||......+. .+.+. ..+-+.|+||++++.+.. .|+.+.+|++.+....
T Consensus 325 p~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 325 PHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred CcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 9 9999988765 679999987765544 56553 346678999999986654 4788999999887654
No 232
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=6.5e-15 Score=132.45 Aligned_cols=281 Identities=11% Similarity=0.094 Sum_probs=176.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-----
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL----- 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~----- 78 (451)
++.+++ .||.|.++|+.+++.+.+++... ....++ ++++|++++++...++.+.++|..+.+......
T Consensus 50 ~~yv~~-rdg~vsviD~~~~~~v~~i~~G~----~~~~i~--~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~ 122 (369)
T PF02239_consen 50 YLYVAN-RDGTVSVIDLATGKVVATIKVGG----NPRGIA--VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMP 122 (369)
T ss_dssp EEEEEE-TTSEEEEEETTSSSEEEEEE-SS----EEEEEE--E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-
T ss_pred EEEEEc-CCCeEEEEECCcccEEEEEecCC----CcceEE--EcCCCCEEEEEecCCCceeEeccccccceeeccccccc
Confidence 355556 79999999999999999997643 334555 999999999998777999999999877654332
Q ss_pred ---CCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCc
Q 012996 79 ---PAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLL 152 (451)
Q Consensus 79 ---~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~ 152 (451)
....+..|..+|....++.. -..+.|.+.|....+.+. .............|+|++++++.+ ..+..|-++|..
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~ 202 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTK 202 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETT
T ss_pred ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeec
Confidence 23467888888988855554 445788888877665442 222344567789999999987765 446689999986
Q ss_pred chhhhhhhhcccccceecccCCcCceeEE-------EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEE
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDI-------VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIA 225 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-------~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~ 225 (451)
+......... .-..|..++..+ .|...+.+...++.-....+.+||..+.+.+..+...+...-+.
T Consensus 203 ~~k~v~~i~~-------g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~ 275 (369)
T PF02239_consen 203 TGKLVALIDT-------GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIK 275 (369)
T ss_dssp TTEEEEEEE--------SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE
T ss_pred cceEEEEeec-------cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceee
Confidence 5321110000 012233333322 23333322333333334466789999999999999666668889
Q ss_pred ECCCCCEEEEE----eCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcC--CCcEEEEeC
Q 012996 226 LDPAEHVFYAG----SRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSE--DGMVRVWDP 297 (451)
Q Consensus 226 ~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~ 297 (451)
.+|+++++++. ...+.|.++|..+. +.+..+.. -...+..+.|++ |+.+..+.. +|.|.+||.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl---------~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTL---------KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGT---------EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEET
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCc---------ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999998 44579999999986 33334332 223589999999 886666544 346999999
Q ss_pred CCCceEEEee
Q 012996 298 ITHNIVRMFR 307 (451)
Q Consensus 298 ~~~~~~~~~~ 307 (451)
.+.+.+.++.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999999987
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.4e-14 Score=134.64 Aligned_cols=238 Identities=14% Similarity=0.105 Sum_probs=152.1
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEEC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAAN 89 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~ 89 (451)
...|.+||.. |.....+.. +...+.... |+|+|+.++.++..+ ..|.+||+.+++........+.+.+.+|+
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~---~~~~v~~p~--wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALS---SPEPIISPA--WSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWS 248 (427)
T ss_pred ccEEEEECCC-CCCceEecc---CCCCcccce--EcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEEC
Confidence 4567788864 544444433 234455666 999999998776432 46999999888765444344567789999
Q ss_pred CCCcEEE-EeccCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccc
Q 012996 90 SHGTYIA-GGGQSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 90 ~~~~~l~-~~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|||+.|+ +.+.+|...|| |+..+. ...+..+........|+|||+.|+..+. +|...+|.+... ..
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~---------~g 318 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS---------GG 318 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC---------CC
Confidence 9999886 45667775555 444443 4455556566677899999998876554 466777765321 11
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC--
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG-- 240 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-- 240 (451)
. ...+..+........|+|++ ++++..+.++ .|.+||+.+++... +..........|+|+++.|+.++.++
T Consensus 319 ~-~~~lt~~g~~~~~~~~SpDG--~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~spdg~~l~~~~~~~g~ 394 (427)
T PRK02889 319 A-AQRVTFTGSYNTSPRISPDG--KLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAPNGRYILYATQQGGR 394 (427)
T ss_pred c-eEEEecCCCCcCceEECCCC--CEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECCCCCEEEEEEecCCC
Confidence 1 11111122233456899988 6777666544 69999998876543 33333456789999999988876544
Q ss_pred -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.+++.+.... ....+..+.+.+...+|+|
T Consensus 395 ~~l~~~~~~g~----------~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 395 SVLAAVSSDGR----------IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEEEECCCC----------ceEEeecCCCCCCCCccCC
Confidence 3555555332 2333444566777778876
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1.9e-14 Score=134.23 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=153.3
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANS 90 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~ 90 (451)
..|.+||.. +...+.+..+ ...+.... |+|+|+.++.++..+ ..|.+||+.++.........+...+.+|+|
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~---~~~v~~p~--wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRS---AEPILSPA--WSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCC-CCCceEeecC---CCcccccc--CCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 469999985 4444444433 34456666 999999998876432 469999998877654444445566889999
Q ss_pred CCcEEEE-eccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhccc
Q 012996 91 HGTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 91 ~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~ 164 (451)
||+.|+. .+.+| .|++||+.+++.. .+..+.......+|+|||+.|+.++. +|. |.++++.++ .
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---------~ 327 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---------S 327 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------C
Confidence 9997764 34455 5999999887643 45555555678899999998887664 455 555565331 1
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-- 239 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-- 239 (451)
...+..+.......+|+|++ +.++..+.++ .|.+||+.+++.. .+..........|+|+|+.++..+.+
T Consensus 328 ---~~~lt~~g~~~~~~~~SpDG--~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 328 ---AERLTFQGNYNARASVSPDG--KKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred ---eEEeecCCCCccCEEECCCC--CEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCC
Confidence 11111222334467899998 6666554332 6999999887654 33333345567999999988776653
Q ss_pred -CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 240 -GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 240 -g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
+.|+++++.... ...+..+.+.+...+|+|
T Consensus 402 ~~~L~~~~~~g~~----------~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 402 RGVLAAVSTDGRV----------RQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEEEEECCCCc----------eEEcccCCCCCCCCccCC
Confidence 357777775432 333444556667777765
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.8e-14 Score=131.19 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=157.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.+||.+.........+...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+....|+|||+.|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEE
Confidence 5899999877766666667789999999999999887653 467999999887653 344566677889999999877
Q ss_pred E-EeeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCce
Q 012996 138 I-SGSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRL 211 (451)
Q Consensus 138 ~-s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~ 211 (451)
+ +.+.++. |.+||+.++ ....+..+........|+|++ +.++..+ .+| .|+++|+..+..
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~------------~~~~Lt~~~~~~~~~~~spDG--~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSG------------TTTRLTDSPAIDTSPSYSPDG--SQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred EEEEecCCCceEEEEECCCC------------ceEEccCCCCccCceeEcCCC--CEEEEEECCCCCCeEEEEECCCCCe
Confidence 5 5555655 666677441 123344555566778999998 6666554 333 688889876654
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.........+....|+|+|+.|+....+ ..|.+||+.... ...+. ....+....|+| ++.|+..+
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----------~~~lt-~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----------ERILT-SGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----------eEecc-CCCCCCCCeECCCCCEEEEEE
Confidence 4333345556778999999999876643 367888875532 11121 123467789999 88777654
Q ss_pred CC------CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 288 ED------GMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 288 ~d------g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
.+ ..+.++|+..+.. ..+.. .+.+...+|+|
T Consensus 396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 396 QTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred ccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 42 2577888765544 44442 44566667765
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=1.6e-14 Score=118.04 Aligned_cols=132 Identities=16% Similarity=0.205 Sum_probs=100.5
Q ss_pred cEEEEEcCC-Cceeeeee--cccceeEEEECCCCCEEEEE--eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996 200 TCKVWSLLK-GRLLRNIV--FPSVIDAIALDPAEHVFYAG--SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (451)
Q Consensus 200 ~i~iwd~~~-~~~~~~~~--~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (451)
...+|.++. +.....+. ..++|.+++|+|+++.|++. ..++.|.+||++. ..+..+ +...++.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~~~--~~~~~n~ 105 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIFSF--GTQPRNT 105 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeEee--cCCCceE
Confidence 355555532 23344444 34579999999999987665 3567999999963 334444 3567889
Q ss_pred EEEec-CCEEEEEcC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC------CCCccccccCCCCC
Q 012996 275 LAYST-GDLLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF------SNPHTSSRRHGSQL 344 (451)
Q Consensus 275 ~~~~~-~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~------d~~i~iw~~~~~~~ 344 (451)
+.|+| |++|++++. .|.|.+||+++.+.+.+.... .++.++|+|||++|++++. |+.++||+..|..+
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99999 999999875 467999999999998887643 4789999999999998874 78899999988654
Q ss_pred C
Q 012996 345 P 345 (451)
Q Consensus 345 ~ 345 (451)
.
T Consensus 184 ~ 184 (194)
T PF08662_consen 184 Y 184 (194)
T ss_pred E
Confidence 3
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.6e-13 Score=128.25 Aligned_cols=204 Identities=14% Similarity=0.047 Sum_probs=140.8
Q ss_pred CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
..|.++|. .+.....+..|...+.+..|+|||+.|+..+. +..|.+||+.++ . ...+..+.+.+
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------~---~~~l~~~~g~~ 248 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------Q---RELVGNFPGMT 248 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------c---EEEeecCCCcc
Confidence 36889997 45555667778889999999999999887654 468999999652 1 12233455567
Q ss_pred eEEEEeecCCeeEEEEeeCCCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCC
Q 012996 179 TDIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPS 253 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 253 (451)
....|+|++. .++++.+.++. |++||+.++.......+........|+|+|+.++..+. +| .|+++|+....
T Consensus 249 ~~~~~SPDG~-~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-- 325 (435)
T PRK05137 249 FAPRFSPDGR-KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-- 325 (435)
T ss_pred cCcEECCCCC-EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC--
Confidence 7889999983 34456666665 77779888766544345556677899999998887664 33 68888876643
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
...+..+...+....|+| ++.|+..+.+ ..|.+||+..+. ...+.. ...+....|+|||+.|+..+
T Consensus 326 --------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~-~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 326 --------PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTS-GFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred --------eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccC-CCCCCCCeECCCCCEEEEEE
Confidence 222333345567788999 8888876543 358888976554 333432 23577889999999987765
Q ss_pred CC
Q 012996 330 FS 331 (451)
Q Consensus 330 ~d 331 (451)
.+
T Consensus 396 ~~ 397 (435)
T PRK05137 396 QT 397 (435)
T ss_pred cc
Confidence 43
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.8e-13 Score=121.36 Aligned_cols=275 Identities=11% Similarity=0.150 Sum_probs=183.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.++|||. ..-.|++||+....... ..|. ....|.... .+.|-...+.-..| .+|.+......-...+ -+..
T Consensus 65 Y~lAtG~-YKP~ikvydlanLSLKF--ERhl-Dae~V~fei--LsDD~SK~v~L~~D-R~IefHak~G~hy~~R--IP~~ 135 (703)
T KOG2321|consen 65 YLLATGT-YKPQIKVYDLANLSLKF--ERHL-DAEVVDFEI--LSDDYSKSVFLQND-RTIEFHAKYGRHYRTR--IPKF 135 (703)
T ss_pred EEEEecc-cCCceEEEEcccceeee--eecc-cccceeEEE--eccchhhheEeecC-ceeeehhhcCeeeeee--cCcC
Confidence 5789999 88999999987654432 2222 123333333 34444443333444 5555543222111111 2233
Q ss_pred eeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 83 IKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 83 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
-..++++. ...++++ +....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|-.||.+.........
T Consensus 136 GRDm~y~~~scDly~~-gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~ 214 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLV-GSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLD 214 (703)
T ss_pred CccccccCCCccEEEe-ecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeee
Confidence 45666654 3444444 444579999999999999998888999999999988899999999999999997633222211
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec--ccceeEEEECCCC-CEEEEEeC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALDPAE-HVFYAGSR 238 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~-~~l~~~~~ 238 (451)
................|+++.|..+| -.+++|+.+|.+.|||+++.+++..-.| ..+|..+.|.+.+ .--++...
T Consensus 215 ~~~~v~s~pg~~~~~svTal~F~d~g--L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 215 AASSVNSHPGGDAAPSVTALKFRDDG--LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccccCCCccccccCcceEEEecCCc--eeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc
Confidence 11111111111223349999999887 8999999999999999999998877765 4578889997752 22333455
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
...++|||-.++++ ...+ .....++.+++-| +.+++++-.++.+..|=+..
T Consensus 293 k~~~kiWd~~~Gk~---------~asi-Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 293 KRILKIWDECTGKP---------MASI-EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hHHhhhcccccCCc---------eeec-cccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 67899999988753 2222 2345699999999 88999998888887776554
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.60 E-value=1.5e-12 Score=119.78 Aligned_cols=303 Identities=15% Similarity=0.101 Sum_probs=187.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.+++++ .+|.|..+|..+|+.+..+......... ...++..+++++.+ |.+..+|..+++..........+
T Consensus 67 ~v~v~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~-------p~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 67 KVYAAD-ADGTVVALDAETGKRLWRVDLDERLSGG-------VGADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred EEEEEC-CCCeEEEEEccCCcEeeeecCCCCcccc-------eEEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCcee
Confidence 466677 7899999999999998776544322111 22345666666666 99999999998887765544433
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe-----eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
.+.-.. .+..++.++.+|.++.||..+|+.+..+......+ .+.... +..++.+..+|.+..+|+.++....
T Consensus 138 ~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 138 LSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred ecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 321111 24567777889999999999999887765332211 111121 2467788888999999987653221
Q ss_pred hhhcccccceecccCCcCcee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996 159 ESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
............. .+...+. +..+ . + ..++.++.+|.++.||..+++.+....... .... ...+..+++++
T Consensus 215 ~~~~~~~~g~~~~-~~~~~~~~~p~~-~-~--~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p--~~~~~~vyv~~ 286 (377)
T TIGR03300 215 EQRVALPKGRTEL-ERLVDVDGDPVV-D-G--GQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGP--AVDDNRLYVTD 286 (377)
T ss_pred eeccccCCCCCch-hhhhccCCccEE-E-C--CEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCc--eEeCCEEEEEC
Confidence 1000000000000 0000000 0111 1 2 578888889999999999998877665322 1111 12567888889
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (451)
.+|.++.+|..++.... ..... .....+.... +..+++++.+|.|.++|..+++.+.++..+..++..-
T Consensus 287 ~~G~l~~~d~~tG~~~W---------~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~s 356 (377)
T TIGR03300 287 ADGVVVALDRRSGSELW---------KNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASP 356 (377)
T ss_pred CCCeEEEEECCCCcEEE---------ccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccC
Confidence 99999999998774221 11111 1111111122 7889999999999999999999999988766544433
Q ss_pred EEEecCceeeeccCCCCcccc
Q 012996 317 LVVRRPLYLNLGSFSNPHTSS 337 (451)
Q Consensus 317 ~~s~~~~~l~~~s~d~~i~iw 337 (451)
-...++ .|+.++.||.+..+
T Consensus 357 p~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 357 PVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred CEEECC-EEEEEeCCceEEEe
Confidence 333344 47788889887654
No 240
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.59 E-value=4.2e-12 Score=111.30 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=195.8
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEE
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAA 88 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~ 88 (451)
+..+.+||+.+|..+..+.....+...=-.+. |+.+.+++|-... ..+.|+++ ++..... ......|....|
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k--~s~~D~y~ARvv~--~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLK--FSIDDKYVARVVG--SSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceee--eeecchhhhhhcc--CeEEEEec-CCccccCchhhccccceeeEEe
Confidence 34699999999999998876554311111445 9999999887755 58999997 4433322 223467888999
Q ss_pred CCCC--cEEEE-----eccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee-----------CCCcEEEee
Q 012996 89 NSHG--TYIAG-----GGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-----------EDGCVRIWS 150 (451)
Q Consensus 89 ~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-----------~dg~i~vwd 150 (451)
+|.+ ..||. ++..+.+++|.+..+..+.+..-....=..+.|.+.|++|+.-- ....+.+++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 9964 33443 35678899999987776655432333334688999888776321 124577777
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+.. .. +.......++|.+.+|.|.+.+--+++|..+..+.++|++.. +.....+..=+.+.|+|.+
T Consensus 262 ~~e----------~~--i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~ 327 (561)
T COG5354 262 ITE----------RS--IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHE 327 (561)
T ss_pred ecc----------cc--cceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcc
Confidence 742 11 111225678999999999886555666778999999999866 3334355566778999999
Q ss_pred CEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc------CCCcEEEEeCCCC
Q 012996 231 HVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------EDGMVRVWDPITH 300 (451)
Q Consensus 231 ~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~------~dg~i~iwd~~~~ 300 (451)
+++++++.| |.|.+||..... ..+..+.+ ...+-+.|+| +.++.+.. .|..|.|||+...
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf--------~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRF--------KVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cEEEEecCCccccceEEeccCCce--------EEEEEeec--CCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 999997765 579999987752 44444544 3445578999 88877764 3788999997643
Q ss_pred ceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
... ..+.+.|.|.|++..+.|.+.
T Consensus 398 ~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 398 KVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hhh--------hhhhccccCCcccceeeccCC
Confidence 322 567788999898888877665
No 241
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.8e-11 Score=110.66 Aligned_cols=289 Identities=16% Similarity=0.199 Sum_probs=180.4
Q ss_pred CCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---CCccEEEEECCCC--ceeee---ecCCCC
Q 012996 13 TGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---SSGSILYWSWSKP--QVEVK---SLPAEP 82 (451)
Q Consensus 13 g~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---d~g~i~vw~~~~~--~~~~~---~~~~~~ 82 (451)
+.|.+|++ ++++... ... .........++ ++|++++|.++.. ++|.|..|.+... .+... ......
T Consensus 13 ~gI~~~~~d~~~g~l~~-~~~-~~~~~~Ps~l~--~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTL-VQT-VAEGENPSWLA--VSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS 88 (345)
T ss_dssp TEEEEEEEETTTTEEEE-EEE-EEESSSECCEE--E-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC
T ss_pred CcEEEEEEcCCCCCceE-eee-ecCCCCCceEE--EEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC
Confidence 78999988 4444332 221 11223334455 8999999988866 4589999998764 33222 114556
Q ss_pred eeEEEECCCCcEEEEecc-CCCEEEEEcCC-Ccceee---ec----------cccCCeeEEEEccCCcEEEEeeC-CCcE
Q 012996 83 IKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLKK---WH----------AHYRAVTCLVFSEDGSFLISGSE-DGCV 146 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~s~~~-dg~i 146 (451)
...++++|++++|+++.. +|.|.++++.. +.+... +. .......++.|+|+++++++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 678999999999988864 78999999976 433222 11 12345689999999998887643 3479
Q ss_pred EEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC--CCc--eeeeee-c---
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL--KGR--LLRNIV-F--- 217 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~--~~~~~~-~--- 217 (451)
.+|++...... ......+ .........++|++++. ...++.-.++.|.++++. ++. .+..+. .
T Consensus 169 ~~~~~~~~~~~-------l~~~~~~~~~~G~GPRh~~f~pdg~-~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 169 YVYDIDDDTGK-------LTPVDSIKVPPGSGPRHLAFSPDGK-YAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EEEEE-TTS-T-------EEEEEEEECSTTSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EEEEEeCCCce-------EEEeeccccccCCCCcEEEEcCCcC-EEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 99998552110 1011111 12344568899999883 334455678889999988 442 222222 1
Q ss_pred ---ccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCc
Q 012996 218 ---PSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGM 291 (451)
Q Consensus 218 ---~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~ 291 (451)
......++++|++++|+++.. .+.|.+|+++.... ....+..........+.++++| +++|+++. .++.
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 125778999999999998764 56899999954321 1234444444455689999999 99888876 4668
Q ss_pred EEEEeC--CCCceEEEee-cCCCCeeEEEE
Q 012996 292 VRVWDP--ITHNIVRMFR-LAKGPVNNILV 318 (451)
Q Consensus 292 i~iwd~--~~~~~~~~~~-~~~~~v~~l~~ 318 (451)
|.+|++ .+|.+...-. ..-....||.|
T Consensus 316 v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 316 VSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 999866 5666554432 22345566655
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.3e-13 Score=111.28 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=109.3
Q ss_pred eEEEECCCCcEEEEecc----------CCCEEEEEcCC-Ccceeeecc-ccCCeeEEEEccCCcEEEEe--eCCCcEEEe
Q 012996 84 KPIAANSHGTYIAGGGQ----------SGDIYMWEVAS-GRLLKKWHA-HYRAVTCLVFSEDGSFLISG--SEDGCVRIW 149 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~--~~dg~i~vw 149 (451)
..+.|+|+|.+|++-.. -|...+|.++. +.....+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999988765432 13355555522 233334432 34579999999999987654 457799999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---CCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~i~~~~~ 226 (451)
|++ ...+..+ +...+..+.|+|+| +++++++. .|.|.+||.++.+.+....+.. +..++|
T Consensus 89 d~~------------~~~i~~~--~~~~~n~i~wsP~G--~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~W 151 (194)
T PF08662_consen 89 DVK------------GKKIFSF--GTQPRNTISWSPDG--RFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEW 151 (194)
T ss_pred cCc------------ccEeEee--cCCCceEEEECCCC--CEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEE
Confidence 993 2233333 35677889999999 88888774 4679999999988888877664 689999
Q ss_pred CCCCCEEEEEeC------CCcEEEEEccCC
Q 012996 227 DPAEHVFYAGSR------DGSIYIAALNAE 250 (451)
Q Consensus 227 ~~~~~~l~~~~~------dg~i~i~d~~~~ 250 (451)
+|+|++|++++. |+.++||+....
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 999999999874 678999998653
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4.7e-11 Score=100.92 Aligned_cols=301 Identities=15% Similarity=0.189 Sum_probs=196.0
Q ss_pred CeEEEeecCCC---CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--CccEEEEECCC--Cce
Q 012996 1 MELLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--SGSILYWSWSK--PQV 73 (451)
Q Consensus 1 ~e~~l~s~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--~g~i~vw~~~~--~~~ 73 (451)
|...+..|++. +..|.+|++.+..-..............+.++ |+|+++.|.++..+ .|.|.-|.++. +..
T Consensus 1 m~~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~--~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L 78 (346)
T COG2706 1 MKQTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLA--VNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL 78 (346)
T ss_pred CceEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEE--ECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE
Confidence 44444444445 77899999884333323333334556667777 99999999888766 58899888875 454
Q ss_pred eeee---cCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCC-Cccee--eeccccCC----------eeEEEEccCCcE
Q 012996 74 EVKS---LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVAS-GRLLK--KWHAHYRA----------VTCLVFSEDGSF 136 (451)
Q Consensus 74 ~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~ 136 (451)
.... ....+...++++++|++++++.. .|.|.++-++. |.+.. ..-.|.+. +....+.|++++
T Consensus 79 t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 79 TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 4332 23455589999999999998865 47899999865 43322 12235444 888999999999
Q ss_pred EEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCC-ce-
Q 012996 137 LISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKG-RL- 211 (451)
Q Consensus 137 l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~-~~- 211 (451)
|++... | .|.+|++..+.... .....+ .....-..|.|+|++ ++.+. +-.+++|.+|..... ..
T Consensus 159 l~v~DLG~D-ri~~y~~~dg~L~~-------~~~~~v-~~G~GPRHi~FHpn~--k~aY~v~EL~stV~v~~y~~~~g~~ 227 (346)
T COG2706 159 LVVPDLGTD-RIFLYDLDDGKLTP-------ADPAEV-KPGAGPRHIVFHPNG--KYAYLVNELNSTVDVLEYNPAVGKF 227 (346)
T ss_pred EEEeecCCc-eEEEEEcccCcccc-------cccccc-CCCCCcceEEEcCCC--cEEEEEeccCCEEEEEEEcCCCceE
Confidence 988754 4 79999996432110 011111 334456789999998 55554 446899999998763 22
Q ss_pred --eeeee-------cccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996 212 --LRNIV-------FPSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (451)
Q Consensus 212 --~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 280 (451)
++.+. ......++.++|+|++|+++... ..|.+|.+...... ...+.....+....+...+++ +
T Consensus 228 ~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-----L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 228 EELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-----LELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred EEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-----EEEEEEeccCCcCCccceeCCCC
Confidence 22221 24567789999999999998543 36888877664311 133444444556678899999 9
Q ss_pred CEEEEEcCCC-cEEEEeC--CCCceEEEee-cCCCCeeEEEEE
Q 012996 281 DLLISGSEDG-MVRVWDP--ITHNIVRMFR-LAKGPVNNILVV 319 (451)
Q Consensus 281 ~~l~s~~~dg-~i~iwd~--~~~~~~~~~~-~~~~~v~~l~~s 319 (451)
++|+++..++ +|.+|.. .+|++-.... .......|+.|.
T Consensus 303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 303 RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 9999998754 5888765 4565544333 222344555553
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=4.3e-13 Score=109.29 Aligned_cols=270 Identities=17% Similarity=0.144 Sum_probs=178.4
Q ss_pred CCCeEEEECccCceee--eeecCCCCCCceEEecceEe---eccC-cccCCCCCCccEEEEECCCCceeeeec-------
Q 012996 12 DTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFL---ASSQ-LREQPSASSGSILYWSWSKPQVEVKSL------- 78 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~------- 78 (451)
-|.+.+|++...+... +++.. ....+..+. |. .+|. .++-+... |.|.++............
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~--dts~~~dm~--w~~~~~~g~~~l~~a~a~-G~i~~~r~~~~~ss~~L~~ls~~ki 119 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCT--DTSTEFDML--WRIRETDGDFNLLDAHAR-GQIQLYRNDEDESSVHLRGLSSKKI 119 (339)
T ss_pred ccceEEEeecccccCccceeeee--cccccceee--eeeccCCccceeeecccc-ceEEEEeeccceeeeeecccchhhh
Confidence 4678888887655543 11110 111222222 32 2333 34444455 889998765433221111
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
......++.|++.+.-++++-.+|.+.+-+.....+.. .++.|.-+++...|+. +.+.+++|+.|+.+..||++-
T Consensus 120 ~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~-- 197 (339)
T KOG0280|consen 120 SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRI-- 197 (339)
T ss_pred hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecC--
Confidence 11135688899999999999999999976665554444 7899999999999986 567899999999999999963
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccceeEEEECCCC-CEE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSVIDAIALDPAE-HVF 233 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~i~~~~~~~~~-~~l 233 (451)
+..-.-+....|...|.+|.-+|... .++++|+.|-.|++||.+ -++++..-...+.|..+.++|.- ..+
T Consensus 198 -------p~~~i~~n~kvH~~GV~SI~ss~~~~-~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 198 -------PKTFIWHNSKVHTSGVVSIYSSPPKP-TYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred -------CcceeeecceeeecceEEEecCCCCC-ceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHH
Confidence 12222233567899999998876532 899999999999999999 47788777788999999999942 233
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCcEE-EEeCCCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMVR-VWDPITH 300 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~-iwd~~~~ 300 (451)
+.++.-.-.++.+....... ..........|.+-.+.-.|.. ..+|+|++ .|..++ +|-..++
T Consensus 270 L~~CMh~G~ki~~~~~~~~e----~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 270 LAACMHNGAKILDSSDKVLE----FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHhcCceEEEecccccc----hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 33333344566666554321 0123445667888788888866 67888875 466644 6655444
No 245
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.6e-12 Score=121.74 Aligned_cols=231 Identities=18% Similarity=0.162 Sum_probs=150.6
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.++|...........+...+...+|+|||++|+.+... ..|++||+.+++... +..+.+.+.++.|+||++.|
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 56888888765555445566678999999999999887643 469999998876543 33455667789999999877
Q ss_pred EE-eeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCce
Q 012996 138 IS-GSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRL 211 (451)
Q Consensus 138 ~s-~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~ 211 (451)
+. .+.++ .|.+||+.+. ....+..+........|++++ ..|+..+. ++ .|+++|+.+++.
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~s~dg--~~l~~~s~~~g~~~iy~~d~~~~~~ 314 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGK------------QLTRLTNGPGIDTEPSWSPDG--KSIAFTSDRGGSPQIYMMDADGGEV 314 (417)
T ss_pred EEEECCCCCccEEEEECCCC------------CEEECCCCCCCCCCEEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 64 44444 5888888542 122233344444566888887 56655443 33 588888877765
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeCCC---cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSRDG---SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
..............|+|++++++.++.++ .|.+||+.+... . .+... .......|+| +++|+..+
T Consensus 315 ~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-------~---~l~~~-~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-------R---VLTDT-GLDESPSFAPNGRMILYAT 383 (417)
T ss_pred EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence 43333555677889999999999888776 788888876431 1 11111 2234567999 88887776
Q ss_pred CCC---cEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996 288 EDG---MVRVWDPITHNIVRMFRLAKGPVNNILV 318 (451)
Q Consensus 288 ~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (451)
.++ .+.+.+. ++.....+..+.+.+..+.|
T Consensus 384 ~~~~~~~l~~~~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 384 TRGGRGVLGLVST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred eCCCcEEEEEEEC-CCceeeECCCCCCCcCCCCC
Confidence 654 3555553 45555666555555555544
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.57 E-value=2.7e-12 Score=121.78 Aligned_cols=187 Identities=20% Similarity=0.221 Sum_probs=147.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~ 81 (451)
..++... .+..+.+||...+.....+.... ...-..++-..++++.-++++++.. +.|.+|+........ ...|.+
T Consensus 100 k~i~l~~-~~ns~~i~d~~~~~~~~~i~~~e-r~~l~~~~~~g~s~~~~~i~~gsv~-~~iivW~~~~dn~p~~l~GHeG 176 (967)
T KOG0974|consen 100 KKIALVT-SRNSLLIRDSKNSSVLSKIQSDE-RCTLYSSLIIGDSAEELYIASGSVF-GEIIVWKPHEDNKPIRLKGHEG 176 (967)
T ss_pred ceEEEEE-cCceEEEEecccCceehhcCCCc-eEEEEeEEEEeccCcEEEEEecccc-ccEEEEeccccCCcceecccCC
Confidence 4566666 77899999988777765554321 1111112222267778888888888 999999987555544 677999
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
.|.++.++-||+++++.+.|.++++|++.+.+... ..-+|...|+.++|+|+ .++|++.|.+.++|+..
T Consensus 177 ~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-------- 246 (967)
T KOG0974|consen 177 SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-------- 246 (967)
T ss_pred ceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc--------
Confidence 99999999999999999999999999999998776 66789999999999988 89999999999999762
Q ss_pred hcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 161 QRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
...+..+.+|.+ .|..++..++. ...+|++.|+.+++||+..
T Consensus 247 ----~~~l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 ----GTQLEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ----cceehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence 223346777754 67888887776 7999999999999999753
No 247
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=2.5e-13 Score=113.02 Aligned_cols=258 Identities=18% Similarity=0.270 Sum_probs=176.3
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----ceeeecccc------------CCeeEEEEccCC--cEEEE
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS 139 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s 139 (451)
..+-|.++.|...|.+||+|..+|.|.++.-.... ....++.|. ..|..+.|.+++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678999999999999999999999999753322 223344443 468889998854 56778
Q ss_pred eeCCCcEEEeeCcchhhhhhh---------hc---------------ccccceec-ccCCcCceeEEEEeecCCeeEEEE
Q 012996 140 GSEDGCVRIWSLLTVFEECES---------QR---------------ASHLYLHS-FTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~---------~~---------------~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
.+.|.+|++|.+......... .. ....+.+. -..|+--|.++.++.+. ..+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~--Et~lS 181 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK--ETFLS 181 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc--ceEee
Confidence 889999999998653221100 00 00001111 14578888999888876 55555
Q ss_pred eeCCCcEEEEEcCCCceeeeee---------cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCC-------CCC
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPST-------SSY 257 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~-------~~~ 257 (451)
+ .|=.|.+|++.--.....+. ....|++..|+| ..+.|+-.+..|.|++.|++....-. .+.
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 4 57789999986433222221 234688999999 56778888999999999998532110 011
Q ss_pred CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC-CCCceEEEeecCCC------------C---eeEEEEEe
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-ITHNIVRMFRLAKG------------P---VNNILVVR 320 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~---v~~l~~s~ 320 (451)
.+....-+.+--..|..+.|++ |+|+++-+. -+|++||+ ...+++.+++.|.. . =..++|+-
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence 1111122333346788999999 999997643 57999999 45678888776642 2 24578999
Q ss_pred cCceeeeccCCCCccccccC
Q 012996 321 RPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 321 ~~~~l~~~s~d~~i~iw~~~ 340 (451)
++.+++|||..+..++++..
T Consensus 340 ~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred CcceEecccccceEEEecCC
Confidence 99999999999999999954
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.56 E-value=4.5e-11 Score=105.16 Aligned_cols=267 Identities=10% Similarity=0.016 Sum_probs=171.7
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeecCCC-
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLPAE- 81 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~~~~- 81 (451)
.++|.+.|..+++.+.++.....+. .+ ++|+++.+.++.. ++..|.+||..+.+.........
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~P~-~~------~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~ 98 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFLPN-PV------VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG 98 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCCCc-ee------ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC
Confidence 3899999999999999887665433 22 7799999988887 77999999999988775544322
Q ss_pred -------CeeEEEECCCCcEEEEec-c-CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 82 -------PIKPIAANSHGTYIAGGG-Q-SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 82 -------~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
....++++|||++|++.. . +..|.+.|+.+++.+..+.... ...-...+++.. + +-+.||......+.
T Consensus 99 p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d 175 (352)
T TIGR02658 99 PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYG 175 (352)
T ss_pred chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEec
Confidence 334889999999998776 3 6889999999999988876422 222222222222 2 22345555444432
Q ss_pred chhhhhhhhcccccceecccCCcCceeE-EEEee-cCCeeEEEEeeCCCcEEEEEcCCC-----ceeeeee--------c
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITD-IVIGY-GGVSATIVSASEDRTCKVWSLLKG-----RLLRNIV--------F 217 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~--------~ 217 (451)
+..... .... ..+..-..++.. -.+.+ ++ .+++.... |.|.+.|+... .....+. .
T Consensus 176 ~~g~~~---~~~~---~vf~~~~~~v~~rP~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 176 TKGNPK---IKPT---EVFHPEDEYLINHPAYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred CCCceE---Eeee---eeecCCccccccCCceEcCCC--cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence 211000 0000 001100000000 03344 44 56666555 99999996443 2222221 2
Q ss_pred ccceeEEEECCCCCEEEEEe----------CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEE
Q 012996 218 PSVIDAIALDPAEHVFYAGS----------RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS 285 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s 285 (451)
+....-++++|+++.+++.. ..+.|.++|..+. +.+..+.- ...+..++++| ++ +|++
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---------kvi~~i~v-G~~~~~iavS~Dgkp~lyv 316 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---------KRLRKIEL-GHEIDSINVSQDAKPLLYA 316 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---------eEEEEEeC-CCceeeEEECCCCCeEEEE
Confidence 33445599999999999853 1247999999886 34444432 45889999999 77 7776
Q ss_pred Ec-CCCcEEEEeCCCCceEEEee
Q 012996 286 GS-EDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 286 ~~-~dg~i~iwd~~~~~~~~~~~ 307 (451)
.. .++.|.++|..+++.++++.
T Consensus 317 tn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 317 LSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred eCCCCCcEEEEECcCCeEEeeec
Confidence 65 67889999999999999983
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.55 E-value=2.3e-13 Score=128.78 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=154.0
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC----CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 156 (451)
+.|....+.-+...++.++.+..+.+||...+........... ...-+-++++.-++++|+.-+.|.+|+...
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--- 164 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--- 164 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc---
Confidence 3444455566677888888889999999987766655543221 122334566777899999999999999842
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eeecccceeEEEECCCCCEEE
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~ 234 (451)
...+ ..+.+|.+.|.++.++.++ .++++.|.|.++++|++.+.+... -+.|...+..+++.|+ .++
T Consensus 165 -------dn~p-~~l~GHeG~iF~i~~s~dg--~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 165 -------DNKP-IRLKGHEGSIFSIVTSLDG--RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred -------cCCc-ceecccCCceEEEEEccCC--cEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeE
Confidence 1111 2678999999999999998 899999999999999999988765 4559999999999999 999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+++.|.+.++|+.... .+..+.+|. ..|..++..+ ...++|++.||.+++||+..
T Consensus 233 t~gedctcrvW~~~~~----------~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVNGT----------QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EeccceEEEEEecccc----------eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999976653 244666675 4789999988 88999999999999999764
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.54 E-value=1.8e-12 Score=105.70 Aligned_cols=258 Identities=10% Similarity=0.084 Sum_probs=177.9
Q ss_pred ccEEEEECCCCceee----eecCCCCeeEEEECC---CCc-EEEEeccCCCEEEEEcCCCcceeeecccc------CCee
Q 012996 61 GSILYWSWSKPQVEV----KSLPAEPIKPIAANS---HGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHY------RAVT 126 (451)
Q Consensus 61 g~i~vw~~~~~~~~~----~~~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~ 126 (451)
|.+.+|++...+... .......+..+.|.- +|. .++.+-..|.|.+|..........+.+-. ....
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 889999987554322 222345677777753 455 45666778999999875544444443221 1345
Q ss_pred EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
++.|++.+..++++..+|.+.+-+... .....++.++.|...++...|+.... +++++|+.|+.+..||+
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~---------~~le~vq~wk~He~E~Wta~f~~~~p-nlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETE---------MVLEKVQTWKVHEFEAWTAKFSDKEP-NLVYTGGDDGSLSCWDI 195 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecce---------eeeeecccccccceeeeeeecccCCC-ceEEecCCCceEEEEEe
Confidence 788999888999999999998555422 23334557889999999999987654 89999999999999999
Q ss_pred C-CCceeee--eecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---
Q 012996 207 L-KGRLLRN--IVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--- 279 (451)
Q Consensus 207 ~-~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 279 (451)
+ .++.+.. ..|...|.++.-+| .+.++++|+.|-.|++||.++.. +++..- .-.+.|+.+.++|
T Consensus 196 R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~~~-~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--------KPLFKA-KVGGGVWRIKHHPEIF 266 (339)
T ss_pred cCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--------CccccC-ccccceEEEEecchhh
Confidence 9 3333333 23788899988887 68899999999999999999653 222221 1238899999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCC--c---eEEEeecCCCCeeEEEEEecCceeeecc-CCCCcc-ccc
Q 012996 280 GDLLISGSEDGMVRVWDPITH--N---IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHT-SSR 338 (451)
Q Consensus 280 ~~~l~s~~~dg~i~iwd~~~~--~---~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~-iw~ 338 (451)
+.+|+++-.+| .+|-+...+ + .+...+.|.+-+..-.|.....+|||++ .|+.++ +|-
T Consensus 267 ~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 267 HRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred hHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 44566655555 566665543 3 3445567777677777766666788876 455533 554
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4e-12 Score=119.08 Aligned_cols=232 Identities=19% Similarity=0.148 Sum_probs=148.7
Q ss_pred cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI 138 (451)
Q Consensus 62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 138 (451)
.|.++|.+.........+...+....|+|||+.|+..+.+ ..|++||+.+++... +....+.+....|+|||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 5888888766655555567788999999999998876543 359999998876543 222334455789999998877
Q ss_pred -EeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCcee
Q 012996 139 -SGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGRLL 212 (451)
Q Consensus 139 -s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~~~ 212 (451)
+.+.+| .|.+||+.++ ....+..+........|+|++ ..++..+ .+| .|+++|+.+++..
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~------------~~~~lt~~~~~~~~~~~spDg--~~i~f~s~~~g~~~iy~~d~~~g~~~ 324 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASR------------QLSRVTNHPAIDTEPFWGKDG--RTLYFTSDRGGKPQIYKVNVNGGRAE 324 (430)
T ss_pred EEEccCCCceEEEEECCCC------------CeEEcccCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECCCCCEE
Confidence 444455 5777888542 122233444455667899988 5554443 444 5777788777643
Q ss_pred eeeecccceeEEEECCCCCEEEEEeCC-C--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC
Q 012996 213 RNIVFPSVIDAIALDPAEHVFYAGSRD-G--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE 288 (451)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~ 288 (451)
.............|+|+++.++..+.+ + .|.++|+.++.. ..+ .. ........|+| |+.++..+.
T Consensus 325 ~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~l---t~-~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 325 RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RIL---TD-TSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEc---cC-CCCCCCceECCCCCEEEEEEe
Confidence 322222334457899999999877653 3 588888877531 111 11 11222458999 888777654
Q ss_pred C---CcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 289 D---GMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 289 d---g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
+ ..|.++++. +.....+..+.+.+...+|+|
T Consensus 394 ~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 394 QQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred cCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 346777764 444455655566677777776
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5e-12 Score=117.97 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=146.9
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
..|.++|.+.............+.+..|+|||+.|+..+.+ ..|++||+.+++... +....+......|+|||+.|
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 36777887766555455567788999999999998876542 258999998876432 22222334578999999987
Q ss_pred EE-eeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCC--cEEEEEcCCCce
Q 012996 138 IS-GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDR--TCKVWSLLKGRL 211 (451)
Q Consensus 138 ~s-~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~--~i~iwd~~~~~~ 211 (451)
+. .+.+|. |.++|+.++ ....+..+........|+|++ +.++. ...++ .|+++|+.+++.
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg------------~~~~lt~~~~~~~~p~wSpDG--~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATK------------ALTRITRHRAIDTEPSWHPDG--KSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EEEEeCCCCeEEEEEECCCC------------CeEECccCCCCccceEECCCC--CEEEEEECCCCCceEEEEECCCCCE
Confidence 64 555665 666777441 122334444556678899988 55544 43344 466678877764
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.............+|+|+|++++..+. ++ .|.++|+.++.. . .+... .......|+| ++.|+..+
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~---~lt~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------Q---VLTST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------E---EccCC-CCCCCceECCCCCEEEEEE
Confidence 332222233345789999999887654 34 455667766531 1 11111 1122347999 87776655
Q ss_pred C-CCc--EEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 288 E-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 288 ~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
. +|. +.+++. ++.....+..+.+.+...+|+|
T Consensus 412 ~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 412 TYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 4 333 777786 5667777776667788888887
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=8e-13 Score=110.09 Aligned_cols=229 Identities=15% Similarity=0.204 Sum_probs=162.4
Q ss_pred eEEEeecCCCCCCeEEEE-CccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----e-ee
Q 012996 2 ELLIASSSVADTGIGCWD-LESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----V-EV 75 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~-~~ 75 (451)
|.-+++.+ .|.+++||- ...|+.-..+.. .-+..++++. |.+....|.++-.. |++.-+.+.... . ..
T Consensus 36 e~gv~~~s-~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~--y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~ 109 (404)
T KOG1409|consen 36 EEGVISVS-EDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAME--YVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKD 109 (404)
T ss_pred CCCeEEcc-ccceeeeEEeccccccCchhhh--hCCCCceEee--eeccceEEEEEEec-ceEEEEEhhhhhhhcchhhh
Confidence 34577888 999999995 334554444432 3456677777 88888888777666 999888765322 1 12
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
...|...|..+-|+-...++++.+.|..+.---.+++..+..+. .....+++.+.-. +...|...|.|.+-.+..
T Consensus 110 ~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~-- 184 (404)
T KOG1409|consen 110 YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFVGDHSGQITMLKLEQ-- 184 (404)
T ss_pred hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEecccccceEEEEEee--
Confidence 23478899999999888999999988766543344444433221 0111122222211 556666677777766643
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeeecccceeEEEECCCCCEE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l 233 (451)
....++.++.+|.+.++++.|.+.. ..+++|..|..+.+||+.-++-. ....|...|..++.-+.-+.+
T Consensus 185 -------~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l 255 (404)
T KOG1409|consen 185 -------NGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQL 255 (404)
T ss_pred -------cCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheee
Confidence 4566788899999999999999887 89999999999999999754433 333478889999988888999
Q ss_pred EEEeCCCcEEEEEccCC
Q 012996 234 YAGSRDGSIYIAALNAE 250 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~ 250 (451)
.+++.||.|.+|+++..
T Consensus 256 ~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 256 ISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eeccCCCeEEEEeccce
Confidence 99999999999998654
No 254
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=136.61 Aligned_cols=228 Identities=18% Similarity=0.257 Sum_probs=171.3
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
++..+.++. -+|...+.++|+.| |.|++|.+..++... +......|+.+.|+.+|+.+..+..||.+.+|.+. .
T Consensus 2207 ~v~~v~r~~--sHp~~~~Yltgs~d-gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMT--SHPSDPYYLTGSQD-GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred ccCceeeec--CCCCCceEEecCCC-ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 566777777 88889999999998 999999998776553 33345889999999999999999999999999975 6
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
+.....+.|.....++.|-. ..+++++. ++.+.+||..-. ....+++ ..|.+.++++++.|..
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~--------~~~s~v~--~~H~~gaT~l~~~P~~-- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP--------PMNSLVH--TCHDGGATVLAYAPKH-- 2348 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC--------cccceee--eecCCCceEEEEcCcc--
Confidence 77778899999999999984 66777654 688999997431 2223344 7899999999999998
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
..+++|+.+|.|++||++..+..+.++. ++ ...+|++|+..|.|+||++...........-.....+..+.
T Consensus 2349 qllisggr~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~ 2419 (2439)
T KOG1064|consen 2349 QLLISGGRKGEVCLFDIRQRQLRHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNI 2419 (2439)
T ss_pred eEEEecCCcCcEEEeehHHHHHHHHhhh--------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhc
Confidence 8999999999999999998887776653 44 67889999999999999998763221111000000011111
Q ss_pred cceeEEEEecCCEEEEEcCCCc
Q 012996 270 KAVTCLAYSTGDLLISGSEDGM 291 (451)
Q Consensus 270 ~~v~~~~~~~~~~l~s~~~dg~ 291 (451)
+ ..+...+.+.|.+|+.||+
T Consensus 2420 g--~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2420 G--MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred C--ceeeeccCceEEEecCCCC
Confidence 1 2333334677888888874
No 255
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-11 Score=109.21 Aligned_cols=274 Identities=10% Similarity=0.177 Sum_probs=183.1
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHG 92 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~ 92 (451)
-.+.+|+++++.....++.... .+ .+.. |+.|..+.|--.. +.+++|+...........|...|+.+.+||.+
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q--~~-W~~q--fs~dEsl~arlv~--nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp 177 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQ--NG-WVPQ--FSIDESLAARLVS--NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGP 177 (566)
T ss_pred Cceeeeeeccceehhheehhhh--cC-cccc--cccchhhhhhhhc--ceEEEEecCCccceeeeeeccceeeEEecCCC
Confidence 3477999999666655543221 21 4566 9999887666555 79999999987777777788999999999863
Q ss_pred --cEEEE-----eccCCCEEEEEcCCCcce-----eeeccccCCeeEEEEccCCcEE-EEe--eCC---------CcEEE
Q 012996 93 --TYIAG-----GGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSEDGSFL-ISG--SED---------GCVRI 148 (451)
Q Consensus 93 --~~l~~-----~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l-~s~--~~d---------g~i~v 148 (451)
..+|+ ++.-+.|+||...-...- ++|- ...=..+.|.+-|.-| +.+ .-| .++++
T Consensus 178 ~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyl 255 (566)
T KOG2315|consen 178 EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYL 255 (566)
T ss_pred CCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEE
Confidence 34443 355567999987522211 1111 1122356787755432 222 223 24666
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP 228 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~ 228 (451)
.++.. ...... -...++|.++.|++++..--++.|-.-..+.|||++ +.++..+ ..++=+++-|+|
T Consensus 256 l~t~g-----------~s~~V~-L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df-~egpRN~~~fnp 321 (566)
T KOG2315|consen 256 LATQG-----------ESVSVP-LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF-PEGPRNTAFFNP 321 (566)
T ss_pred EEecC-----------ceEEEe-cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC-CCCCccceEECC
Confidence 66631 111111 224789999999999964455667788899999985 5555554 356678899999
Q ss_pred CCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC------CCcEEEEeCC
Q 012996 229 AEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------DGMVRVWDPI 298 (451)
Q Consensus 229 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~------dg~i~iwd~~ 298 (451)
.|++++.++.+ |.+-+||..+. +.+..+.. ..-+-+.|+| |.+|+|+.. |+.++||++
T Consensus 322 ~g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~~~~a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy- 389 (566)
T KOG2315|consen 322 HGNIILLAGFGNLPGDMEVWDVPNR---------KLIAKFKA--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY- 389 (566)
T ss_pred CCCEEEEeecCCCCCceEEEeccch---------hhcccccc--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-
Confidence 99999988764 68999999885 34444443 3446678999 999999874 788999996
Q ss_pred CCceEEEeecCCCCeeEEEEEecC
Q 012996 299 THNIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
+|.++..-.-.. ....+.|-|-.
T Consensus 390 tG~~l~~~~f~s-EL~qv~W~P~~ 412 (566)
T KOG2315|consen 390 TGSLLHEKMFKS-ELLQVEWRPFN 412 (566)
T ss_pred cCceeehhhhhH-hHhheeeeecC
Confidence 566665433222 57888888743
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2e-11 Score=113.02 Aligned_cols=241 Identities=13% Similarity=0.041 Sum_probs=144.0
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCccc---CCCCC-CccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLRE---QPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~---~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~ 88 (451)
..|.+.|...+.. +.+.... .....-. |+|||+.++ +...+ ...|.+.++.+++........+.....+|
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~---~~~~sP~--wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~w 238 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEH---SLSITPT--WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTF 238 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCC---CCcccce--EccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEE
Confidence 4677788764443 3333221 2223334 999998633 22222 14677778887765554444556667899
Q ss_pred CCCCcEEEEecc-CC--C--EEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhh
Q 012996 89 NSHGTYIAGGGQ-SG--D--IYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 89 ~~~~~~l~~~~~-dg--~--i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 159 (451)
+|||+.|+..+. +| . +.+|++..+ ........+.+......|+|||+.|+..+ .+|...+|.+.-.
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~----- 313 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID----- 313 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc-----
Confidence 999998876542 22 2 344676653 33333333334456789999999877655 4666566644210
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (451)
........+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++..........+....|+|+|+.|+..
T Consensus 314 ---~~g~~~~~lt~~~~~~~~p~wSPDG--~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 314 ---PEGQSPRLLTKKYRNSSCPAWSPDG--KKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ---ccccceEEeccCCCCccceeECCCC--CEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE
Confidence 0011122333444566778899998 666655432 36999999888765433344467789999999988754
Q ss_pred eC---CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 237 SR---DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 237 ~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.. ...|+++|+..+. ...+....+.+...+|+|
T Consensus 389 ~~~~g~~~L~~vdl~~g~----------~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 389 AGNSNESELYLISLITKK----------TRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred ECCCCCceEEEEECCCCC----------EEEeecCCCcccCceecC
Confidence 43 3468888887653 122223344566777877
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=3e-12 Score=114.29 Aligned_cols=191 Identities=19% Similarity=0.263 Sum_probs=148.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec----ceEe--------------eccCcccCCCCCCccEE
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG----QRFL--------------ASSQLREQPSASSGSIL 64 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~----~~~~--------------~~~~~l~~~~~d~g~i~ 64 (451)
.++|... .||.+++||+..++....|.....-...-++.. ..++ .+...++-|... |.|.
T Consensus 6 ~~~A~~~-~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~-g~v~ 83 (541)
T KOG4547|consen 6 DYFALST-GDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ-GSVL 83 (541)
T ss_pred heEeecC-CCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC-ccEE
Confidence 4788888 999999999999998877754433222222222 1111 233344445455 9999
Q ss_pred EEECCCCceeeeec---CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee
Q 012996 65 YWSWSKPQVEVKSL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS 141 (451)
Q Consensus 65 vw~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 141 (451)
+|+...+++..+.. |.+.|.++.++.+-..|.+++.|+.+..|+......++.+++....+.+++.+||+..+++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999999876643 789999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec--CC-eeEE-EEeeCCCcEEEEEcCC
Q 012996 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG--GV-SATI-VSASEDRTCKVWSLLK 208 (451)
Q Consensus 142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~--~~-~~~l-~s~~~d~~i~iwd~~~ 208 (451)
+.|++||+++ ...+..|.+|.++|.++.|... +. +.++ .+...+..+.+|-+..
T Consensus 164 --~~ik~~~~~~-----------kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIET-----------KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccC-----------ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 5899999944 6678999999999999999876 11 1444 4455566677887654
No 258
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.49 E-value=7.6e-12 Score=117.14 Aligned_cols=205 Identities=16% Similarity=0.089 Sum_probs=138.2
Q ss_pred CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC---CcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (451)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (451)
.|.++|.. +.....+..+...+....|+|||++|+.++.+ ..|.+||+.++ .. ..+..+...+.
T Consensus 171 ~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---------~~---~~~~~~~~~~~ 237 (417)
T TIGR02800 171 ELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---------QR---EKVASFPGMNG 237 (417)
T ss_pred eEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---------CE---EEeecCCCCcc
Confidence 58888875 44445555567778899999999999877654 47999998652 11 12223445566
Q ss_pred EEEEeecCCeeEEEEeeCCC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCCC
Q 012996 180 DIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPST 254 (451)
Q Consensus 180 ~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~ 254 (451)
+++|+|++. .++++.+.++ .|++||+.++.......+........|+|+++.|+..+. ++ .|+++|+.+..
T Consensus 238 ~~~~spDg~-~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~--- 313 (417)
T TIGR02800 238 APAFSPDGS-KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE--- 313 (417)
T ss_pred ceEECCCCC-EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---
Confidence 788999883 3444555444 588899987765444334444557789999998876654 33 57777876543
Q ss_pred CCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC---cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996 255 SSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 255 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
...+..+...+....|+| +++++.++.++ .|.+||+.++... .+... .......|+|+|++|+.++.
T Consensus 314 -------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 314 -------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATT 384 (417)
T ss_pred -------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEe
Confidence 223333455677889999 88888887776 7899998876543 33322 23456689999999988776
Q ss_pred CCC
Q 012996 331 SNP 333 (451)
Q Consensus 331 d~~ 333 (451)
++.
T Consensus 385 ~~~ 387 (417)
T TIGR02800 385 RGG 387 (417)
T ss_pred CCC
Confidence 653
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=9.2e-11 Score=106.01 Aligned_cols=273 Identities=15% Similarity=0.139 Sum_probs=172.1
Q ss_pred ccEEEEEC--CCCceeeee--cCCCCeeEEEECCCCcEEEEecc----CCCEEEEEcCCC--c--ceeeeccccCCeeEE
Q 012996 61 GSILYWSW--SKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQ----SGDIYMWEVASG--R--LLKKWHAHYRAVTCL 128 (451)
Q Consensus 61 g~i~vw~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~ 128 (451)
+.|.+|++ +++.+.... ........++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 78888888 444443222 24567889999999999988766 568999988764 2 233333344556789
Q ss_pred EEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhh-ccc--ccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEE
Q 012996 129 VFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQ-RAS--HLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKV 203 (451)
Q Consensus 129 ~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~-~~~--~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~i 203 (451)
+++|++++|+++.. +|.|.++++.......... ... ..-............++.++|++ +++++.. ....|.+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYV 170 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEE
Confidence 99999999998874 8899999996521100000 000 00000001123445678899988 6666544 4457999
Q ss_pred EEcCCCc--eee--e--eecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeecc------CCc
Q 012996 204 WSLLKGR--LLR--N--IVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSD------HSK 270 (451)
Q Consensus 204 wd~~~~~--~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~ 270 (451)
|++.... ... . +........++|+|+++++++... ++.|.+|++...... ...+..... ...
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS-----LTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESCETTSCSSS
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc-----eeEEEEeeeccccccccC
Confidence 9997654 322 2 235567899999999999887754 668999998832210 122222211 122
Q ss_pred ceeEEEEec-CCEEEEEc-CCCcEEEEeCC--CCc--eEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996 271 AVTCLAYST-GDLLISGS-EDGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~ 340 (451)
....|.++| +++|+++. ..+.|.+|++. ++. .+..+......-+.++++|+|++|+++. .++.|.+|+++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 678899999 88877765 46789999983 233 3444444344579999999999998776 55789998875
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.5e-11 Score=115.17 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=145.5
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (451)
.|.++|...+. ...+..+ ...+.... |+|+|+.|+..+.++ ..|.+|++.++.........+.+...+|+||
T Consensus 180 ~l~~~d~~g~~-~~~l~~~---~~~~~~p~--wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQS---REPILSPR--WSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCC-ceEEecC---CCceeeee--ECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCC
Confidence 47888876444 3334332 24456666 999999998766442 4688999988776544434455667999999
Q ss_pred CcEEEE-eccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CC--cEEEeeCcchhhhhhhhcccc
Q 012996 92 GTYIAG-GGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 92 ~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|+.|+. ...+| .|++||+.+++.. .+..+........|+|||+.|+..+. +| .|.++++.++. .
T Consensus 254 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---------~ 323 (430)
T PRK00178 254 GSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---------A 323 (430)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---------E
Confidence 998874 44444 5888899877644 34445556677899999998776554 33 46666764321 1
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC-C-
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G- 240 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g- 240 (451)
..+ .+.+ .......|+|++ +.++..+. ++ .|.+||+.+++.. .+..........|+|+|+.++..+.+ |
T Consensus 324 ~~l-t~~~--~~~~~~~~Spdg--~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~ 397 (430)
T PRK00178 324 ERV-TFVG--NYNARPRLSADG--KTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGR 397 (430)
T ss_pred EEe-ecCC--CCccceEECCCC--CEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCc
Confidence 111 1111 223346788888 56665543 33 5888999887643 23322233356899999998876644 3
Q ss_pred -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.++++++.... ...+..+.+.+...+|+|
T Consensus 398 ~~l~~~~~~g~~----------~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 398 GVLMLVSINGRV----------RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred eEEEEEECCCCc----------eEECcCCCCCcCCCccCC
Confidence 46677775432 223333445666677776
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=2.7e-12 Score=107.01 Aligned_cols=248 Identities=17% Similarity=0.260 Sum_probs=191.5
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
++.+.|+....-|-..-+++.+.|.+++||--+ +++.-..+ .....+++++.+.++...|++|-.+|++.-+.+....
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 355677777777777779999999999999643 33332222 2234678999999999999999999999999885432
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (451)
.+....+....|...+..+.|+... .++++.+.|..+.---.+.+..+..+.......++.+.-. +.++
T Consensus 102 -------nkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 102 -------NKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV 170 (404)
T ss_pred -------hhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence 3344566778899999999998877 8999999998877666666666555543333333333222 6777
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc-eEEEeecCCCCe
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN-IVRMFRLAKGPV 313 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v 313 (451)
|...|.|..-.+.... ..++.++.+|...+++++|.+ ...|.+|..|..+.+||+.-++ ...++.+|.+.|
T Consensus 171 Gd~~gqvt~lr~~~~~-------~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNG-------CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred cccccceEEEEEeecC-------CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 8888888777765543 367889999999999999999 9999999999999999987554 345678899999
Q ss_pred eEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 314 NNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
..+..-+.-+.|.+++.||.|.+|+.+-..
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 999999999999999999999999987543
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.48 E-value=8.3e-13 Score=131.44 Aligned_cols=222 Identities=17% Similarity=0.302 Sum_probs=170.5
Q ss_pred cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEE
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCL 128 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~ 128 (451)
++....+..+ +...-|..+...... ..+-..|.++.-+|...+.++|+.||.|++|....+..+..++ .....|+.+
T Consensus 2180 s~~~~~~n~~-~~~~tq~~~~~~~~~-k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLP-WLGSTQTSRGASVMI-KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred cccCCcccCC-ccccceecccceeEe-ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 3444444444 555556654444333 3355789999999999999999999999999998888887774 233789999
Q ss_pred EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEE
Q 012996 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWS 205 (451)
Q Consensus 129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd 205 (451)
.|+.+|+.+..+..||.+.+|... ..+......|.....++.|-. ..+++++ .++.+.+||
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q~~------------pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQAS------------PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred hhcccCCceeeeccCCceeecccC------------CcceeccccCCccccceeeee----hhhhccccCCCCCcccchh
Confidence 999999999999999999999983 445667788998888888866 3456544 578899999
Q ss_pred cCCC--ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996 206 LLKG--RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (451)
Q Consensus 206 ~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 283 (451)
..-. .......|.+.++++++-|....|++|+.+|.|++||++... ....++. +....+|
T Consensus 2322 tl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~~~~~f 2383 (2439)
T KOG1064|consen 2322 TLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LDTREYF 2383 (2439)
T ss_pred cccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hhhhhee
Confidence 6432 222224489999999999999999999999999999998863 2222222 2237899
Q ss_pred EEEcCCCcEEEEeCCCCceEEEee
Q 012996 284 ISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 284 ~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
++|+..|.++||++.....++++.
T Consensus 2384 ~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eccCcccceEEEEccccchhhcCc
Confidence 999999999999999888887765
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=6.5e-12 Score=112.21 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=149.2
Q ss_pred cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee------------------cCCeeEEE
Q 012996 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------------------GGVSATIV 193 (451)
Q Consensus 132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~------------------~~~~~~l~ 193 (451)
|...+++....||.+++|+....... ....+... -++..++..|.- .++...++
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~-----~e~~p~~~---~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQ-----QEFAPIAS---LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceee-----eeeccchh---ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEE
Confidence 45678999999999999999653211 01111111 122333333310 11226788
Q ss_pred EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
-|...|.|.+|+...++....+. |.+.|.++.++.+-..|++++.|+.+..|+.... ..+........
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------~~~~~~~~~~~ 145 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------VIIRIWKEQKP 145 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---------eeeeeeccCCC
Confidence 89999999999999999888876 8899999999999999999999999999999886 55677777888
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec-----Cceee-eccCCCCccccccCCC
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR-----PLYLN-LGSFSNPHTSSRRHGS 342 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~-----~~~l~-~~s~d~~i~iw~~~~~ 342 (451)
.+.+++.+| +..+++++ +.|++||+++++.+.+|.+|.++|+++.|.-+ |.++. +...+..+.+|.+...
T Consensus 146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred ccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 999999999 88998875 57999999999999999999999999999987 55554 4556667888987753
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.4e-11 Score=113.40 Aligned_cols=234 Identities=16% Similarity=0.118 Sum_probs=140.5
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (451)
.|.++|...... +.+... ...+.... |+|+|+.++..+.++ ..|.+||+.+++..............+|+||
T Consensus 199 ~l~i~d~dG~~~-~~l~~~---~~~~~~p~--wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRS---PEPLMSPA--WSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCc-eEeecC---CCcccCce--ECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCC
Confidence 577778654333 333322 23445555 999999998775443 3588889887765433333344567899999
Q ss_pred CcEEEE-eccCCC--EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhcccc
Q 012996 92 GTYIAG-GGQSGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 92 ~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~ 165 (451)
|+.|+. .+.+|. |+++|+.+++.. .+..+........|+||++.|+..+. ++. |.++|+.++ ..
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---------~~ 342 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---------KV 342 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---------CE
Confidence 998865 455564 888898777643 44445556678899999998876554 444 555566431 11
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC-C-
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD-G- 240 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g- 240 (451)
..+ ++.+ .......|+|++ ++++..+. ++ .|.++|+.+++... +..........|+|+|+.|+..+.+ |
T Consensus 343 ~~L-t~~g--~~~~~~~~SpDG--~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 343 SRL-TFEG--EQNLGGSITPDG--RSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred EEE-ecCC--CCCcCeeECCCC--CEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCc
Confidence 111 1222 223356889988 55555443 44 45567887776432 2212222345799999988766543 3
Q ss_pred -cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 241 -SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 241 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.+++++.... ....+..+.+.+...+|+|
T Consensus 417 ~~l~~~~~~G~----------~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 417 QVLAAVSIDGR----------FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eEEEEEECCCC----------ceEECcCCCCCcCCCccCC
Confidence 3667776442 2333444555667777776
No 265
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6.8e-11 Score=109.49 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=145.0
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE---EEeccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCc
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI---AGGGQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 135 (451)
..|.+.|.+.............+.+-+|+|||+.+ ++...+| .|++.++.+++.... ....+......|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence 46777787766554444445566778999999752 2444343 488889887764333 22344455789999998
Q ss_pred EEEEeeC-CC----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEE--EcC
Q 012996 136 FLISGSE-DG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVW--SLL 207 (451)
Q Consensus 136 ~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iw--d~~ 207 (451)
.|+..+. +| .+..|++..+. ..........+........|+|++ +.|+..+ .+|...+| ++.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~--------~g~~~~lt~~~~~~~~~p~wSPDG--~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGA--------IGKPRRLLNEAFGTQGNPSFSPDG--TRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCC--------CCcceEeecCCCCCcCCeEECCCC--CEEEEEECCCCCceEEEEECc
Confidence 8886543 23 34446664310 011111122222334567899998 5555444 56655555 443
Q ss_pred C-Cceeeeee-cccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996 208 K-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (451)
Q Consensus 208 ~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 281 (451)
. +.....+. ....+....|+|+|+.|+..+.+ ..|++||+.++.. ..+......+....|+| ++
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC
Confidence 2 22233333 33466788999999988876543 3699999987641 22322334567789999 88
Q ss_pred EEEEEcC---CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996 282 LLISGSE---DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 282 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
.|+..+. ...|.+||+..++..... ...+.+...+|+|-.
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 7765432 346888998877654443 345567778888753
No 266
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3e-11 Score=110.32 Aligned_cols=276 Identities=15% Similarity=0.150 Sum_probs=185.8
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeee------------ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRY------------KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS 69 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~ 69 (451)
+.++|.|+ .||.++|-.+.+...-... +...+|...|..+. |....+.|-++..+ |.|.||-+-
T Consensus 26 ~gyIAcgG-~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvT--WNe~~QKLTtSDt~-GlIiVWmly 101 (1189)
T KOG2041|consen 26 SGYIACGG-ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVT--WNENNQKLTTSDTS-GLIIVWMLY 101 (1189)
T ss_pred CCeEEecc-ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEE--eccccccccccCCC-ceEEEEeee
Confidence 36899999 9999999987654332211 23346778888888 99888888777766 999999988
Q ss_pred CCcee---eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEccCCcEEEEeeCCCc
Q 012996 70 KPQVE---VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSEDGSFLISGSEDGC 145 (451)
Q Consensus 70 ~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 145 (451)
++... ......+-|.+++|+.||..++..-.||.|.|=.+...+.- +.+++ .....+.|++|.+.++.+-.+|.
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange 179 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGE 179 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHHHhhhcCCc
Confidence 77643 33345678999999999999999999999988776433221 11221 22347899999999999999999
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec------CCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG------GVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS 219 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 219 (451)
+.+||....+...-...-.......+......|..+.|... ++...++.+...|.+.|-.-.+......+..+-
T Consensus 180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm 259 (1189)
T KOG2041|consen 180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGM 259 (1189)
T ss_pred EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEeccc
Confidence 99999855332211100000011112223334666666422 123688999999999887665555555556667
Q ss_pred ceeEEEECCCCCEEEEEeCCC---------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 220 VIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
.+....|+++|..|++++.+. .|.+|..-. +.+.+++-....|++++|-. |-.++.+ .|
T Consensus 260 ~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg~gLriA~A-vd 328 (1189)
T KOG2041|consen 260 KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEGTGLRIAIA-VD 328 (1189)
T ss_pred EeecceecCCCcEEEEccCcccccCccccceEEEeccch----------hheEEEecCCceeeeeEEcCCceEEEEE-ec
Confidence 889999999999999988653 455554332 44667777788899999976 4333332 34
Q ss_pred CcEEE
Q 012996 290 GMVRV 294 (451)
Q Consensus 290 g~i~i 294 (451)
+.|.+
T Consensus 329 sfiyf 333 (1189)
T KOG2041|consen 329 SFIYF 333 (1189)
T ss_pred ceEEE
Confidence 44444
No 267
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1e-10 Score=103.75 Aligned_cols=267 Identities=13% Similarity=0.152 Sum_probs=171.9
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSH 91 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~ 91 (451)
..++|||+.+|...+.|....++-..--.. +||.+++++|.... ..|.||+..+-.+. .+...-..|....|+|.
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~f--rWS~DdKy~Arm~~--~sisIyEtpsf~lld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIF--RWSHDDKYFARMTG--NSISIYETPSFMLLDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceE--EeccCCceeEEecc--ceEEEEecCceeeecccccCCccccCcccCCC
Confidence 579999999999999887654332222223 49999999998888 58999997663332 22334678999999999
Q ss_pred CcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe----------eCCCcEEEeeCcchhh
Q 012996 92 GTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG----------SEDGCVRIWSLLTVFE 156 (451)
Q Consensus 92 ~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~----------~~dg~i~vwd~~~~~~ 156 (451)
+++||.-.. -..+.+-.+.+++.+++.+-|.-.=..+.|-.+|.+|+.- +.-..+-|+.++.
T Consensus 358 ~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrire--- 434 (698)
T KOG2314|consen 358 SNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIRE--- 434 (698)
T ss_pred cceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeec---
Confidence 998886533 2457788888888887766555444457777788887742 1222355565533
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCC-C---ceeeeeecccceeEEEECCCCC
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLK-G---RLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~-~---~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
...++... .-...|...+|-|.|+.-.+++|. ...++.+|.+.+ . +.+..+. ....+.+.|+|.|+
T Consensus 435 -------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-k~~~N~vfwsPkG~ 505 (698)
T KOG2314|consen 435 -------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-KKFANTVFWSPKGR 505 (698)
T ss_pred -------cCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc-ccccceEEEcCCCc
Confidence 22222222 235577788888888522222332 235788888873 2 2222222 35678899999999
Q ss_pred EEEEE---eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 232 VFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 232 ~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
+++++ +..|.+.++|+..... . ......| ...+.+.|.| |+|+++++.-+.. .+.+|-.+.+|+
T Consensus 506 fvvva~l~s~~g~l~F~D~~~a~~-------k-~~~~~eh-~~at~veWDPtGRYvvT~ss~wrh---k~d~GYri~tfq 573 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDYADL-------K-DTASPEH-FAATEVEWDPTGRYVVTSSSSWRH---KVDNGYRIFTFQ 573 (698)
T ss_pred EEEEEEecccccceEEEecchhhh-------h-hccCccc-cccccceECCCCCEEEEeeehhhh---ccccceEEEEee
Confidence 98876 4578999999985321 1 1111122 4567899999 9999999865432 233444444444
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.45 E-value=2.3e-10 Score=100.72 Aligned_cols=263 Identities=11% Similarity=0.038 Sum_probs=161.9
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc----------CCCEEEEEcCCCcceeeecccc-------C
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAHY-------R 123 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~-------~ 123 (451)
+.|.+.|..+.+..-...-......+ ++|||+.|.++.. +..|.+||..+++.+..+.... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 78999999998876554433344445 9999998877654 6789999999999988875322 2
Q ss_pred CeeEEEEccCCcEEEEee-C-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 124 AVTCLVFSEDGSFLISGS-E-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
....++++|||++|+... . +..|.+.|+.+ ...+..+.- .+...-... .+ ......+.||..
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-----------~kvv~ei~v-p~~~~vy~t-~e---~~~~~~~~Dg~~ 169 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-----------KAFVRMMDV-PDCYHIFPT-AN---DTFFMHCRDGSL 169 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCC-----------CcEEEEEeC-CCCcEEEEe-cC---CccEEEeecCce
Confidence 334789999999998776 3 68999999955 333333322 111111111 11 111122334444
Q ss_pred EEEEcCC-Cce-eeeee--cc--cce-eEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------
Q 012996 202 KVWSLLK-GRL-LRNIV--FP--SVI-DAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS------- 266 (451)
Q Consensus 202 ~iwd~~~-~~~-~~~~~--~~--~~i-~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------- 266 (451)
....+.+ ++. ..... +. .++ ..-.+.+ +++++++... |.|++.|+........ .....+.
T Consensus 170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~----~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL----PAIEAFTEAEKADG 244 (352)
T ss_pred EEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceec----ceeeeccccccccc
Confidence 3332221 111 11100 01 000 0003455 8888888777 9999999765432111 1111111
Q ss_pred cCCcceeEEEEec-CCEEEEEc----------CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc-eeeecc-CCCC
Q 012996 267 DHSKAVTCLAYST-GDLLISGS----------EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNLGS-FSNP 333 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-~d~~ 333 (451)
-....+.-+++++ ++.+++.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCc
Confidence 1233444599998 77766642 225799999999999999886 45899999999999 777655 6788
Q ss_pred ccccccCCCCCCC
Q 012996 334 HTSSRRHGSQLPP 346 (451)
Q Consensus 334 i~iw~~~~~~~~~ 346 (451)
+.+.|....+...
T Consensus 324 VsViD~~t~k~i~ 336 (352)
T TIGR02658 324 LYIFDAETGKELS 336 (352)
T ss_pred EEEEECcCCeEEe
Confidence 9999987664433
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.44 E-value=7e-10 Score=111.04 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=188.7
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEE----ECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYW----SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
....|..+. |.++...++.+..+ |.|.+. +...........-...|.+++||||+..|+..+.++++.+-.-
T Consensus 74 ~~~~ivs~~--yl~d~~~l~~~~~~-Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~- 149 (928)
T PF04762_consen 74 PNDKIVSFQ--YLADSESLCIALAS-GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR- 149 (928)
T ss_pred CCCcEEEEE--eccCCCcEEEEECC-ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-
Confidence 345666777 99999888888887 999999 7677777766667889999999999999999998888877542
Q ss_pred CCc------------------------ceeeecc------------------------ccCCeeEEEEccCCcEEEEeeC
Q 012996 111 SGR------------------------LLKKWHA------------------------HYRAVTCLVFSEDGSFLISGSE 142 (451)
Q Consensus 111 ~~~------------------------~~~~~~~------------------------~~~~v~~~~~~~~~~~l~s~~~ 142 (451)
+.. ....|+| +...-..|+|-.||.+|++.+.
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 111 1111110 2234457899999999998765
Q ss_pred ---C---CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---CCcEEEEEcCCCceee
Q 012996 143 ---D---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---DRTCKVWSLLKGRLLR 213 (451)
Q Consensus 143 ---d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~ 213 (451)
. ..++||+-+ .....+...-.+--.+++|.|.| ++|++... ...|.+|. ++|-...
T Consensus 230 ~~~~~~~R~iRVy~Re------------G~L~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfE-rNGLrhg 294 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE------------GELQSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFE-RNGLRHG 294 (928)
T ss_pred EcCCCceeEEEEECCC------------ceEEeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEe-cCCcEee
Confidence 2 468999863 11222222222223467888888 78888765 34567777 4555555
Q ss_pred eeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec--CCEEEE
Q 012996 214 NIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST--GDLLIS 285 (451)
Q Consensus 214 ~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~l~s 285 (451)
.|.. ...|..+.|++++..|++...|. |.+|-..+-. |-....+.- ....+..+.|+| ...|..
T Consensus 295 eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v 366 (928)
T PF04762_consen 295 EFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-------WYLKQEIRFSSSESVNFVKWDPEKPLRLHV 366 (928)
T ss_pred eEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-------EEEEEEEEccCCCCCCceEECCCCCCEEEE
Confidence 5542 45799999999999999987655 9999887642 222223322 223455589998 566777
Q ss_pred EcCCCcEEEEeC----CCCc--------eEEEee-----------------------cCCCCeeEEEEEecCceeeeccC
Q 012996 286 GSEDGMVRVWDP----ITHN--------IVRMFR-----------------------LAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 286 ~~~dg~i~iwd~----~~~~--------~~~~~~-----------------------~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
.+.+|.+..++. ..+. .+..+. ....+|.+++|++++..+++-..
T Consensus 367 ~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~ 446 (928)
T PF04762_consen 367 LTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTS 446 (928)
T ss_pred EecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEEC
Confidence 777676655442 2110 111111 12468999999999988999999
Q ss_pred CCCccccccCCC
Q 012996 331 SNPHTSSRRHGS 342 (451)
Q Consensus 331 d~~i~iw~~~~~ 342 (451)
||.+.+|.....
T Consensus 447 d~~l~~~~~~~~ 458 (928)
T PF04762_consen 447 DGSLSIYEWDLK 458 (928)
T ss_pred CCCEEEEEecCC
Confidence 999999885543
No 270
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=6.2e-10 Score=94.27 Aligned_cols=269 Identities=13% Similarity=0.116 Sum_probs=176.9
Q ss_pred ccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCC--Ccc--eeeeccccCCeeEEE
Q 012996 61 GSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS--GRL--LKKWHAHYRAVTCLV 129 (451)
Q Consensus 61 g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~ 129 (451)
.-|.+|++++..- .......+.++-|+|+|++++|.++.. +|.|.-|.+.. |++ +........+.+.++
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvs 95 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVS 95 (346)
T ss_pred CceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEE
Confidence 7899999884332 233345678999999999999988754 46787777764 443 222222334447899
Q ss_pred EccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCc----------eeEEEEeecCCeeEEEEeeC-
Q 012996 130 FSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR----------ITDIVIGYGGVSATIVSASE- 197 (451)
Q Consensus 130 ~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~i~~~~~~~~~~l~s~~~- 197 (451)
+++++++++++.. -|.|.++-+.... ..........|.+. +....+.|++ +++++.+.
T Consensus 96 vd~~g~~vf~AnY~~g~v~v~p~~~dG--------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~--~~l~v~DLG 165 (346)
T COG2706 96 VDEDGRFVFVANYHSGSVSVYPLQADG--------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG--RYLVVPDLG 165 (346)
T ss_pred ECCCCCEEEEEEccCceEEEEEcccCC--------ccccceeeeecCCCCCCccccCCccceeeeCCCC--CEEEEeecC
Confidence 9999999998876 4789999885521 11111112223333 6667788888 77777663
Q ss_pred CCcEEEEEcCCCceeeee----ecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeec---cCC
Q 012996 198 DRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLS---DHS 269 (451)
Q Consensus 198 d~~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~ 269 (451)
--.|.+|++..+.....- ........|.|+|++++.++.+. +++|.+|..+..... ....+.+..+. .-.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~--~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK--FEELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce--EEEeeeeccCccccCCC
Confidence 346999999877654322 35667899999999999988764 789999998875211 00111111111 123
Q ss_pred cceeEEEEec-CCEEEEEcC-CCcEEEEeCCCC-ceEEE---eecCCCCeeEEEEEecCceeeeccCCC-CccccccCC
Q 012996 270 KAVTCLAYST-GDLLISGSE-DGMVRVWDPITH-NIVRM---FRLAKGPVNNILVVRRPLYLNLGSFSN-PHTSSRRHG 341 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~~-~~~~~---~~~~~~~v~~l~~s~~~~~l~~~s~d~-~i~iw~~~~ 341 (451)
.....|..++ |++|.++.. ...|.+|.+... ..+.. ...+...-....|+|.|++|+++..++ .+.++.++.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 4667788999 999988754 336888876532 22332 223333468899999999999988764 577777653
No 271
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=1.1e-11 Score=103.31 Aligned_cols=243 Identities=14% Similarity=0.157 Sum_probs=154.4
Q ss_pred EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEec-------ceEeeccCc--ccCCCCCCccEEEEEC
Q 012996 3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-------QRFLASSQL--REQPSASSGSILYWSW 68 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-------~~~~~~~~~--l~~~~~d~g~i~vw~~ 68 (451)
.+||||. .+|.|.++.-.... ....++.|...-..+.++. .+|.++++. ++..+.| .+|++|.+
T Consensus 38 e~LatGd-kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd-ktiKlWKi 115 (433)
T KOG1354|consen 38 ERLATGD-KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND-KTIKLWKI 115 (433)
T ss_pred ceEeecC-CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC-cceeeeee
Confidence 5799999 99999999754322 2333444433222222211 127665543 4444555 99999987
Q ss_pred CCCcee-------------------------------------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 69 SKPQVE-------------------------------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 69 ~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
...... ....|.-.|.+|.++.|+..++++ .|=.|.+|++.-
T Consensus 116 ~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei 194 (433)
T KOG1354|consen 116 RERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEI 194 (433)
T ss_pred eccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccc
Confidence 532110 011245578899999999988884 567899999864
Q ss_pred Ccc---eeeeccc-----cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh-----hhcccccceecccCCcCc
Q 012996 112 GRL---LKKWHAH-----YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE-----SQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 112 ~~~---~~~~~~~-----~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 177 (451)
... +.-++.+ ..-|++..|+| ..+.|+-.+..|+|++.|++....... ..........-+.+--..
T Consensus 195 ~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsS 274 (433)
T KOG1354|consen 195 IDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISS 274 (433)
T ss_pred cCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhh
Confidence 322 1112222 35688899999 456777888899999999984211100 000111112223344567
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEc-CCCceeeeee-cc------------cc---eeEEEECCCCCEEEEEeCCC
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSL-LKGRLLRNIV-FP------------SV---IDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-~~------------~~---i~~~~~~~~~~~l~~~~~dg 240 (451)
|.++.|+.+| +++++-+. -+|++||+ ...+++.+++ |. .. -..++|+.++.++++|+...
T Consensus 275 ISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 275 ISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred hhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence 8899999998 78887643 57999999 4556666655 21 12 24578999999999999999
Q ss_pred cEEEEEccCCC
Q 012996 241 SIYIAALNAES 251 (451)
Q Consensus 241 ~i~i~d~~~~~ 251 (451)
.+++|+...+.
T Consensus 352 ~frvf~~~~gs 362 (433)
T KOG1354|consen 352 VFRVFNLARGS 362 (433)
T ss_pred eEEEecCCCCc
Confidence 99999976654
No 272
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=2.2e-11 Score=112.12 Aligned_cols=309 Identities=13% Similarity=0.055 Sum_probs=201.2
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeeec-C
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKSL-P 79 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~ 79 (451)
.++||++. ..|.|.+||...+..+..+..+..+...+..+. +-++. ..|++.... .++.+|+..+++...+.. .
T Consensus 79 ~lliAsaD-~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~--~rd~Srd~LlaIh~s-s~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 79 QLLIASAD-ISGRIILVDFVLASVINWLSHSNDSVQDLCWVP--ARDDSRDVLLAIHGS-STLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ceeEEecc-ccCcEEEEEehhhhhhhhhcCCCcchhheeeee--ccCcchheeEEecCC-cEEEEEEccCCceeeccccC
Confidence 36899999 999999999999999988887776666666554 44556 344444444 899999999999887754 3
Q ss_pred CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC-------CcceeeeccccC-------------------------Cee
Q 012996 80 AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS-------GRLLKKWHAHYR-------------------------AVT 126 (451)
Q Consensus 80 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~-------------------------~v~ 126 (451)
.....|+.+.| |.+.+..-+..|.+.+-+.-. ++..+.-..|.+ ...
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 45666799988 666666666667777765421 111111111111 012
Q ss_pred EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
.++|+|.-+.++-......+.++|++ -..++....-..+.+.-+.+.|++....+++...||.+.+|--
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle-----------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLE-----------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcch-----------hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 34567765555555667789999983 3444555555556666678888888789999999999999975
Q ss_pred CCCceeeee-----e--cccce-----------eEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCC----------CC
Q 012996 207 LKGRLLRNI-----V--FPSVI-----------DAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTS----------SY 257 (451)
Q Consensus 207 ~~~~~~~~~-----~--~~~~i-----------~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~----------~~ 257 (451)
+......+. . ....+ ......|. ...+++--.+|...+|.+.++..... ++
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf 383 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPF 383 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccc
Confidence 542111111 0 11222 22233343 44555556778888888875432110 00
Q ss_pred C------------ceeeeeeccCCcceeEEEEec-C------------------CEEEEEcCCCcEEEEeCCCCceEEEe
Q 012996 258 G------------MHIIGSLSDHSKAVTCLAYST-G------------------DLLISGSEDGMVRVWDPITHNIVRMF 306 (451)
Q Consensus 258 ~------------~~~~~~~~~~~~~v~~~~~~~-~------------------~~l~s~~~dg~i~iwd~~~~~~~~~~ 306 (451)
. ...+....+|....++....| . .+++.|...|+|.++|+.++..-+.+
T Consensus 384 ~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f 463 (1062)
T KOG1912|consen 384 DFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF 463 (1062)
T ss_pred cccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh
Confidence 0 011112234555555555443 1 26888999999999999999999999
Q ss_pred ecCCCCeeEEEEEecCcee
Q 012996 307 RLAKGPVNNILVVRRPLYL 325 (451)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l 325 (451)
..|.+.|.++.|.-...++
T Consensus 464 svht~~VkgleW~g~sslv 482 (1062)
T KOG1912|consen 464 SVHTSLVKGLEWLGNSSLV 482 (1062)
T ss_pred cccccceeeeeeccceeEE
Confidence 9999999999998766555
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=6.7e-11 Score=108.11 Aligned_cols=276 Identities=13% Similarity=0.153 Sum_probs=198.5
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----------------eeecCCCCeeEEEECCCCcEEEEecc
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----------------VKSLPAEPIKPIAANSHGTYIAGGGQ 100 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~l~~~~~ 100 (451)
..+.|+. |.....++|+||.| |.++|..+.+.... ...+|.+.|.-+.|+.+...|-+...
T Consensus 15 vkL~c~~--WNke~gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAE--WNKESGYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEE--EcccCCeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 3467777 99999999999999 99999987643211 12347889999999999999999999
Q ss_pred CCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 101 SGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 101 dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
+|.|.||-+..|.-...+ ....+-|.+++|..||..++....||.|.+=.+.. ....-+.+.+ ...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG----------NRIwgKeLkg--~~l 159 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG----------NRIWGKELKG--QLL 159 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc----------ceecchhcch--hec
Confidence 999999999888654433 23456789999999999999999999998876632 1111122222 123
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-------eeeee-----ecccceeEEEEC--------CCCCEEEEEeC
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-------LLRNI-----VFPSVIDAIALD--------PAEHVFYAGSR 238 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~-----~~~~~i~~~~~~--------~~~~~l~~~~~ 238 (451)
..+.|+++. ..++.+-..|.+.+||....- +.... ..+..|..+.|. |+...|+++..
T Consensus 160 ~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~ 237 (1189)
T KOG2041|consen 160 AHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA 237 (1189)
T ss_pred cceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc
Confidence 467888887 777788888999999975321 10111 123446666663 57889999999
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---------CcEEEEeCCCCceEEEeec
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---------GMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~ 308 (451)
.|.+.+..-.+.. .++.. ...-.+....|++ |.+|+.++.+ +.|.+|. .-|+.+.+++.
T Consensus 238 nGr~QiMR~eND~--------~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkv 306 (1189)
T KOG2041|consen 238 NGRMQIMRSENDP--------EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKV 306 (1189)
T ss_pred CceehhhhhcCCC--------CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEec
Confidence 9998887554432 22222 2236788999999 9999999864 2566776 45888999999
Q ss_pred CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
....|++++|-..|-.+|.+ .|+.+.+-++++
T Consensus 307 pg~~It~lsWEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 307 PGSCITGLSWEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred CCceeeeeEEcCCceEEEEE-ecceEEEEeecc
Confidence 89999999999888777655 456665555543
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=2.7e-10 Score=92.04 Aligned_cols=235 Identities=10% Similarity=0.004 Sum_probs=155.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~ 81 (451)
.+||.|+ ..|...+|...+.+... +.+..+.+.|..+. ++......+..++.| .++++.+++.+....... ..-
T Consensus 85 ~~la~gG-~~g~fd~~~~~tn~~h~--~~cd~snn~v~~~~-r~cd~~~~~~i~snd-ht~k~~~~~~~s~~~~~h~~~~ 159 (344)
T KOG4532|consen 85 VTLADGG-ASGQFDLFACNTNDGHL--YQCDVSNNDVTLVK-RYCDLKFPLNIASND-HTGKTMVVSGDSNKFAVHNQNL 159 (344)
T ss_pred cEEEecc-ccceeeeecccCcccce--eeecccccchhhhh-hhcccccceeeccCC-cceeEEEEecCcccceeecccc
Confidence 5799999 99999999988665442 33444556555443 122222233444454 788888776544332221 113
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-c-ee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-L-LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~-~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
.+.++++++|++++++.+....|..|.+.... . +. ......+.=.+..|+.....+|++..||++.|||++......
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 48899999999999999999999999886542 2 22 223334445688999999999999999999999997632211
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---------cceeEEEECCC
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPA 229 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~ 229 (451)
.....+-..|.+.+..+.|++.+.-.+|+..-.-+.+.+.|++++...+.+..+ ..|..-+|+.+
T Consensus 240 ------~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~ 313 (344)
T KOG4532|consen 240 ------AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNE 313 (344)
T ss_pred ------hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCC
Confidence 111223345899999999998776677888878889999999998776665422 12555666666
Q ss_pred CCEEEEEeCCCcEEEEEccC
Q 012996 230 EHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~ 249 (451)
+..+.+.+.+ .+.-|++..
T Consensus 314 n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 314 NESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred Ccccccccch-hhheeeccc
Confidence 6555554432 234444433
No 275
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.33 E-value=2.2e-09 Score=99.26 Aligned_cols=308 Identities=12% Similarity=0.054 Sum_probs=181.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC-------CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK 76 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~ 76 (451)
.+++++ .+|.+.-+|..+|+.+.+....... ...+.. . ....+..+++++.+ |.+.-+|.++++....
T Consensus 71 ~vy~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~--~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 71 KVYAAD-RAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSG-G--VTVAGGKVYIGSEK-GQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEEEEC-CCCeEEEEECCCCcEeeEEcCCCccccccccccccccc-c--cEEECCEEEEEcCC-CEEEEEECCCCCCccc
Confidence 455666 7899999999999998776543210 000100 0 11234455555555 8999999999888776
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-EEEcc--CCcEEEEeeCCCcEEEeeCcc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSE--DGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~--~~~~l~s~~~dg~i~vwd~~~ 153 (451)
......+.+--.- .+..+++++.+|.+.-+|..+|+.+..+......+.. ..-+| .+..++.++.+|.+..+|..+
T Consensus 146 ~~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred ccCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 5544433221111 2445667788899999999999988776532111000 00111 133566777889999988876
Q ss_pred hhhhhhhhccccc---ceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC
Q 012996 154 VFEECESQRASHL---YLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA 229 (451)
Q Consensus 154 ~~~~~~~~~~~~~---~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~ 229 (451)
+............ ....+. ....++ + .+ ..++.++.+|.+..+|..+|+.+........ ..+. ..
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v-~~---~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~ 293 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPV----V-VG---GVVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VD 293 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcE----E-EC---CEEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EE
Confidence 5432211100000 000000 001111 1 12 4677778899999999999988766543321 1111 25
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
+..+++++.+|.++.+|..++....... .. .+ ....+.... +..|+.++.||.|.+.|..+|+.+...+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~W~~~------~~-~~-~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVELWSQS------DL-LH-RLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEccc------cc-CC-CcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 6788888999999999998875221100 00 01 111111122 678889999999999999999998887654
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
...+..--.- .+..|+.++.||.+..++
T Consensus 365 ~~~~~s~P~~-~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 365 SSGFLSEPVV-ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCcceeCCEE-ECCEEEEEeCCceEEEEe
Confidence 3333321111 345788888999887665
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.33 E-value=1.3e-11 Score=112.98 Aligned_cols=275 Identities=17% Similarity=0.198 Sum_probs=186.4
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeec---CCCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCC---cceee
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL---PAEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASG---RLLKK 117 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~---~~~~~ 117 (451)
.+|.|+-+|.++.- .+.+-|+..+-...+.. ..=.|-.+.|+|. ..+-++......-.+|++... .....
T Consensus 32 i~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~ 109 (1081)
T KOG0309|consen 32 INPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV 109 (1081)
T ss_pred eccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEE
Confidence 88999999999885 56677877554433322 2345777888774 344455555667788988533 34456
Q ss_pred eccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996 118 WHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
+.+|...|+.+.|+| ....+++++.|..+..||++. ...++..+..-...-..++|+... ..+.+.+
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS----------p~~p~ys~~~w~s~asqVkwnyk~--p~vlass 177 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS----------PHRPFYSTSSWRSAASQVKWNYKD--PNVLASS 177 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccC----------CCcceeeeecccccCceeeecccC--cchhhhc
Confidence 789999999999998 456789999999999999976 233444555445556678888765 4566667
Q ss_pred CCCcEEEEEcCCCc-eeeeee-cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996 197 EDRTCKVWSLLKGR-LLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (451)
Q Consensus 197 ~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 273 (451)
..+.|.+||.+.|. ++..+. +-..++.+.|.. ....+.+++.||+|.+||....... -........+|.
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e--------~~~~vtt~~piw 249 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE--------SKRTVTTNFPIW 249 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc--------cceeccccCcce
Confidence 77889999999875 444444 556677777765 4456788899999999998765321 112222345566
Q ss_pred EEEEec-CC-EEEEEc-CCCcEEE---------EeCCC-CceEEEeecCCCCeeEEEEEecC----------ceeeeccC
Q 012996 274 CLAYST-GD-LLISGS-EDGMVRV---------WDPIT-HNIVRMFRLAKGPVNNILVVRRP----------LYLNLGSF 330 (451)
Q Consensus 274 ~~~~~~-~~-~l~s~~-~dg~i~i---------wd~~~-~~~~~~~~~~~~~v~~l~~s~~~----------~~l~~~s~ 330 (451)
.-.+-| |. +++--. .+..+.+ |+..+ .+++++|.+|...|....|-..+ -.|+|-|.
T Consensus 250 ~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 250 RGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 656666 32 222111 1123333 44433 46889999999988877775433 36899999
Q ss_pred CCCccccccCCC
Q 012996 331 SNPHTSSRRHGS 342 (451)
Q Consensus 331 d~~i~iw~~~~~ 342 (451)
|..+++|-+...
T Consensus 330 D~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 330 DQTLRLWPIDSQ 341 (1081)
T ss_pred CCceEeeeccHH
Confidence 999999987643
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.29 E-value=3.6e-09 Score=97.52 Aligned_cols=266 Identities=15% Similarity=0.111 Sum_probs=163.6
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCCCCee-EEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC 127 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (451)
.+..+++++.+ |.|..+|..+++..........+. ... .++..+++++.+|.++.+|..+|+.+....... .+.+
T Consensus 64 ~~~~v~v~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADAD-GTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLS 139 (377)
T ss_pred ECCEEEEECCC-CeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeec
Confidence 35666777776 899999999888776654333332 222 246778888899999999999999887654322 2221
Q ss_pred -EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 128 -LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 128 -~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
... .+..++.++.+|.+..||..++........... .........+ .. .+ ..++.+..++.+..+|.
T Consensus 140 ~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~~~~~sp----~~-~~---~~v~~~~~~g~v~ald~ 207 (377)
T TIGR03300 140 PPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTP--ALTLRGSASP----VI-AD---GGVLVGFAGGKLVALDL 207 (377)
T ss_pred CCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCC--ceeecCCCCC----EE-EC---CEEEEECCCCEEEEEEc
Confidence 112 245677778899999999976432211110000 0000000111 11 12 36777888899999999
Q ss_pred CCCceeeeeecccc--------eeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996 207 LKGRLLRNIVFPSV--------IDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (451)
Q Consensus 207 ~~~~~~~~~~~~~~--------i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 276 (451)
.+|+.+........ ...+.-+| .+..+++++.+|.++.+|..+++.. -... .. ......
T Consensus 208 ~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~---------W~~~-~~-~~~~p~ 276 (377)
T TIGR03300 208 QTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL---------WKRD-AS-SYQGPA 276 (377)
T ss_pred cCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE---------Eeec-cC-CccCce
Confidence 99987765432110 00111122 4568888899999999999876421 1111 11 111222
Q ss_pred EecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 277 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.. +..++.++.||.|..+|..+++.+........ ....... .+..|++++.+|.+.+++..+++.
T Consensus 277 ~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 277 VD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred Ee-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 22 67888889999999999999988766532112 2222222 467888899999999999876544
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=7e-09 Score=104.01 Aligned_cols=310 Identities=14% Similarity=0.137 Sum_probs=191.3
Q ss_pred CCCCeEEE----ECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-------------Cc-
Q 012996 11 ADTGIGCW----DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-------------PQ- 72 (451)
Q Consensus 11 ~dg~i~vw----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-------------~~- 72 (451)
.+|.|.+. |..+.... ....-..+|.+++ ||||+..++.+..+ +++.+-+-+- +.
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E----~VG~vd~GI~a~~--WSPD~Ella~vT~~-~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIE----IVGSVDSGILAAS--WSPDEELLALVTGE-GNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred CCceEEEEEccCCCCCceeE----EEEEEcCcEEEEE--ECCCcCEEEEEeCC-CEEEEEeccceEEEEeecCccccCCC
Confidence 45778888 44333221 1123447899999 99999999999887 7777754210 00
Q ss_pred ---------eeee--------------ec-----------CCCCeeEEEECCCCcEEEEecc---C---CCEEEEEcCCC
Q 012996 73 ---------VEVK--------------SL-----------PAEPIKPIAANSHGTYIAGGGQ---S---GDIYMWEVASG 112 (451)
Q Consensus 73 ---------~~~~--------------~~-----------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~ 112 (451)
.... .. ..+.-..|+|-.||.|+|+.+. . ..++||+- .|
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG 246 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EG 246 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-Cc
Confidence 0000 00 1224467889999999998764 3 46999994 57
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
.+..+...-.+--.+++|-|.|+++++... ...|.+|.-... ....+...+......|..+.|+.++
T Consensus 247 ~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL--------rhgeF~l~~~~~~~~v~~l~Wn~ds-- 316 (928)
T PF04762_consen 247 ELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL--------RHGEFTLRFDPEEEKVIELAWNSDS-- 316 (928)
T ss_pred eEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc--------EeeeEecCCCCCCceeeEEEECCCC--
Confidence 665554444444457899999999998765 345666764221 1222222333456788999999998
Q ss_pred eEEEEeeCCCcEEEEEcCCCcee--eeee--cccceeEEEECC-CCCEEEEEeCCCcEEEEEccC----CCCCCC-----
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLL--RNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNA----ESPSTS----- 255 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~--~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~----~~~~~~----- 255 (451)
..|+....|. |.+|-..+-.-. +.+. ....+..+.|+| +...|.+.+.+|.+..+++.- ......
T Consensus 317 ~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~ 395 (928)
T PF04762_consen 317 EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGT 395 (928)
T ss_pred CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceE
Confidence 7888876555 999998775432 2333 234455699999 455677777777776655421 110000
Q ss_pred ----------------CCCcee--eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce--------EEEee-
Q 012996 256 ----------------SYGMHI--IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--------VRMFR- 307 (451)
Q Consensus 256 ----------------~~~~~~--~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~- 307 (451)
...+.+ ...+ .-..+|.+++|++ +..+++-..||.|.+|....... ...+.
T Consensus 396 vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~ 474 (928)
T PF04762_consen 396 VAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISL 474 (928)
T ss_pred EEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhccc
Confidence 000011 1111 2357899999999 76789999999999998543221 11111
Q ss_pred ---------cCCCCeeEEEEEecCceeeeccCC---CCccccccC
Q 012996 308 ---------LAKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRH 340 (451)
Q Consensus 308 ---------~~~~~v~~l~~s~~~~~l~~~s~d---~~i~iw~~~ 340 (451)
.....+..++|..+..+++....+ ..+.+++..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 475 DSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred ccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 123467889998888777665554 456666653
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=6.9e-09 Score=106.08 Aligned_cols=252 Identities=10% Similarity=0.038 Sum_probs=154.2
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeec-C-------------CCCeeEEEECCCCcEEEEe-ccCCCEEEEEcC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-------------AEPIKPIAANSHGTYIAGG-GQSGDIYMWEVA 110 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 110 (451)
+.+.+..+.++...++.|++||........... . -.....|+++++++.|+++ ..++.|+++|+.
T Consensus 575 vd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~ 654 (1057)
T PLN02919 575 IDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFV 654 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecC
Confidence 555544444444444899999986543322211 0 1236889999988866554 445679999987
Q ss_pred CCcceeeeccc-----------------cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996 111 SGRLLKKWHAH-----------------YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172 (451)
Q Consensus 111 ~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 172 (451)
++. +.++.+- -.....++|+| ++..+++.+.++.|++||..++....-. ... ......
T Consensus 655 ~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~--G~G-~~~~~~ 730 (1057)
T PLN02919 655 NET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS--GDG-YERNLN 730 (1057)
T ss_pred CCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe--cCC-ccccCC
Confidence 654 3232110 12346899999 5666777778889999998653211000 000 000000
Q ss_pred C------CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------e-----------cccceeEE
Q 012996 173 G------HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-----------V-----------FPSVIDAI 224 (451)
Q Consensus 173 ~------~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-----------~-----------~~~~i~~~ 224 (451)
+ .-....++++++++. .++++-+.++.|++||+.++...... . .-.....+
T Consensus 731 g~~~~~~~~~~P~GIavspdG~-~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 731 GSSGTSTSFAQPSGISLSPDLK-ELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCccccccccCccEEEEeCCCC-EEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 1 112456789999873 35666677899999999876532111 0 00124688
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC----ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG----MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+++++|..+++-+.++.|++||..+......... ..--....+.-.....|++++ |+++++-+.++.|++||+.+
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9999999888888999999999876532100000 000000112234678899999 98888889999999999998
Q ss_pred Cce
Q 012996 300 HNI 302 (451)
Q Consensus 300 ~~~ 302 (451)
++.
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 765
No 280
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.26 E-value=9.7e-11 Score=100.04 Aligned_cols=167 Identities=18% Similarity=0.197 Sum_probs=115.2
Q ss_pred eeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEEEEeeCCCcEEE
Q 012996 125 VTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASEDRTCKV 203 (451)
Q Consensus 125 v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~~d~~i~i 203 (451)
...+..++.+++++++..+....++++..... ...+..... -...-+++.+..+... ...-..+....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-------cceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeee
Confidence 34456677888888888888877777754211 011111111 1112233334333310 22223444455666
Q ss_pred EEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996 204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (451)
Q Consensus 204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 283 (451)
|....+.....+.|-+.+..++|+||+++++++..|..|++-...... ..-.-.-||..-|..++.-++..|
T Consensus 137 ~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------~IesfclGH~eFVS~isl~~~~~L 208 (390)
T KOG3914|consen 137 LSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------VIESFCLGHKEFVSTISLTDNYLL 208 (390)
T ss_pred ecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------chhhhccccHhheeeeeeccCcee
Confidence 666667777777788999999999999999999999999998776642 112234579999999999988889
Q ss_pred EEEcCCCcEEEEeCCCCceEEEee
Q 012996 284 ISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 284 ~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
++||.|++|++||+.+|+.+.++.
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecCCCCcEEEEecccCCcccccc
Confidence 999999999999999999987765
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=5.2e-11 Score=105.69 Aligned_cols=239 Identities=15% Similarity=0.118 Sum_probs=159.4
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
..|.+.|..++--.+.+-+++++.|.+|++|.++.. .+..+++.|..+|.++.|-.+-++++++ ||.|.+|
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlW 809 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLW 809 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceee
Confidence 347778888877777888999999999999998642 3566788999999999999888877765 8899999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCceeeeee------ccccee
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGRLLRNIV------FPSVID 222 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~------~~~~i~ 222 (451)
|.--+..... .......+.+..+..-++-...+++. ++...+|+++|.+..+-...+. .+..+.
T Consensus 810 DPFigr~Laq---------~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 810 DPFIGRLLAQ---------MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cccccchhHh---------hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 9733211100 01111223333333334322234444 4788999999999987766654 235688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE-EeCCCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV-WDPITH 300 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i-wd~~~~ 300 (451)
+++..|.|+.++++-.+|.|.+.|.+++. .+...+.-......++- | ...|+....|.++.+ |..-++
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~---------vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGK---------VINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCc---------eeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC
Confidence 99999999999999999999999999974 23333222223333332 4 667777778888888 887777
Q ss_pred ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
....+.+....+..-+. .-|..|+++...+.+.+|.
T Consensus 951 imh~q~kpppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 951 IMHLQDKPPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eeeeccCCCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 66666654433322111 2244555555555555554
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=1.1e-08 Score=89.68 Aligned_cols=218 Identities=16% Similarity=0.124 Sum_probs=153.5
Q ss_pred EEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc------cc-----CCeeEEE-Ecc-CCcEEEEeeCCCcEEEeeC
Q 012996 85 PIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA------HY-----RAVTCLV-FSE-DGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~-----~~v~~~~-~~~-~~~~l~s~~~dg~i~vwd~ 151 (451)
+=..+.||+.++- +..|.|++||..+.++...--+ .. .+..-+. |++ +|.+++..|. |...+.+.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~ 348 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRP 348 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECC
Confidence 3345678888776 5568899999876643321100 00 1111111 444 6888888776 57777765
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
.. .. ...-+|.+.|.-..+..++ +-++.|..|| .+-++|..+++.......-+.|.++..+|+|
T Consensus 349 ~~-----------~~--~iqv~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dG 413 (668)
T COG4946 349 WD-----------GY--SIQVGKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDG 413 (668)
T ss_pred CC-----------Ce--eEEcCCCCceEEEEEccCC--cceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCC
Confidence 32 11 1123567778777777776 6788899998 8999999988877666677899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC----cEEEEeCCCCceEEE
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----MVRVWDPITHNIVRM 305 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg----~i~iwd~~~~~~~~~ 305 (451)
++++++.....|.++|+.++.. ...-+...+-|+...|+| ++++|-+--+| .|+++|+..++....
T Consensus 414 K~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 414 KKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred cEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence 9999999999999999999852 122233457899999999 99999887766 599999988776654
Q ss_pred eecCCCCeeEEEEEecCceeeecc
Q 012996 306 FRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 306 ~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
-. ..+.=.+=+|.||+++|.--|
T Consensus 485 TT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 485 TT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred cC-CcccccCcccCCCCcEEEEEe
Confidence 33 233334558899999885543
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.25 E-value=5.2e-09 Score=106.93 Aligned_cols=241 Identities=15% Similarity=0.095 Sum_probs=151.2
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCC--C---------CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCA--S---------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ 72 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~ 72 (451)
++++-. .++.|.+||.. |..+..+.... + .-..-..++ +.+++..+.++...++.|+++|..++.
T Consensus 582 lyVaDs-~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIa--vd~~gn~LYVaDt~n~~Ir~id~~~~~ 657 (1057)
T PLN02919 582 LFISDS-NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLA--YNAKKNLLYVADTENHALREIDFVNET 657 (1057)
T ss_pred EEEEEC-CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEE--EeCCCCEEEEEeCCCceEEEEecCCCE
Confidence 445555 78899999965 55544443211 0 011223444 888888766665544889999987766
Q ss_pred eeeeecC-----------------CCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeecc--------------
Q 012996 73 VEVKSLP-----------------AEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHA-------------- 120 (451)
Q Consensus 73 ~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------- 120 (451)
....... -.....++++| ++.++++.+.++.|++||..++... .+.+
T Consensus 658 V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~ 736 (1057)
T PLN02919 658 VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTS 736 (1057)
T ss_pred EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCcccc
Confidence 5432110 12346899999 5666677777889999998776432 1111
Q ss_pred -ccCCeeEEEEccCCcEE-EEeeCCCcEEEeeCcchhhhhhhhcc--cccceecccC--------CcCceeEEEEeecCC
Q 012996 121 -HYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECESQRA--SHLYLHSFTG--------HTLRITDIVIGYGGV 188 (451)
Q Consensus 121 -~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~i~~i~~~~~~~ 188 (451)
.-.....++++|+++.| ++-+.++.|++||+.++......... .......+.. .-....++++++++
T Consensus 737 ~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG- 815 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG- 815 (1057)
T ss_pred ccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC-
Confidence 11245679999998844 45566789999998653210000000 0000000100 11123578888887
Q ss_pred eeEEEEeeCCCcEEEEEcCCCceeeeeec--------------ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 189 SATIVSASEDRTCKVWSLLKGRLLRNIVF--------------PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.++++-+.++.|++||..++........ -.....++++++|+.+++-+.++.|++||+.+..
T Consensus 816 -~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 816 -QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred -cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 7888888999999999987765533221 1246789999999988888899999999998764
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.24 E-value=2.6e-10 Score=94.11 Aligned_cols=258 Identities=18% Similarity=0.297 Sum_probs=170.1
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----ceeeecccc------------CCeeEEEEccCC--cEEEE
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----LLKKWHAHY------------RAVTCLVFSEDG--SFLIS 139 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~s 139 (451)
..+.|+++.|...|.||++|...|.|.+|.-.... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999854432 223355554 357888887643 45777
Q ss_pred eeCCCcEEEeeCcchhhhhh------------------h------h--cccc-----ccee-cccCCcCceeEEEEeecC
Q 012996 140 GSEDGCVRIWSLLTVFEECE------------------S------Q--RASH-----LYLH-SFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~------------------~------~--~~~~-----~~~~-~~~~~~~~i~~i~~~~~~ 187 (451)
.+.|.+|++|.+........ . . .... .+.+ .-..|+-.|.++.+..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78899999999865310000 0 0 0000 0011 114577778888887775
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceeeeee---------cccceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
..+++ +.|-.|.+|++.-......+. ....|++..|+|. ...+.-.+..|.|++-|++....-....
T Consensus 185 --et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 --ETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred --heeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 44444 467789999986433222221 2345888999994 5667777889999999998543211100
Q ss_pred -------CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCC------------Ce---
Q 012996 258 -------GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKG------------PV--- 313 (451)
Q Consensus 258 -------~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~------------~v--- 313 (451)
......-+.+-...|..+.|++ |+++++-+. -+|+|||++. ..++.++..|.. .|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 0001112233446788999999 888887654 4799999985 467888875532 22
Q ss_pred eEEEEEecCceeeeccCCCCccccccC
Q 012996 314 NNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 314 ~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
..+.||-|...+.+|+..+...++-..
T Consensus 341 FeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 341 FEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEEEecCCcccccccccccceeeeccc
Confidence 347789999999999998888877643
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.24 E-value=3.2e-08 Score=85.31 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=147.0
Q ss_pred EEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc-cCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 85 PIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 85 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
++.|.+ ++.++++-...+.|+.|+..++.... +.... ...+.+. +++. |+.+... .+.++|+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g-------- 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTG-------- 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTT--------
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCC--------
Confidence 577887 77777887778999999987775433 22222 6777887 6655 4554554 4566687552
Q ss_pred ccccceecc--cC-CcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996 163 ASHLYLHSF--TG-HTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 163 ~~~~~~~~~--~~-~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
....+... .. .....+++++.+++ ++.++.... |.|..++.. ++.......-...+.++|+|+++
T Consensus 71 -~~~~~~~~~~~~~~~~~~ND~~vd~~G--~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~ 146 (246)
T PF08450_consen 71 -KVTVLADLPDGGVPFNRPNDVAVDPDG--NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGK 146 (246)
T ss_dssp -EEEEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSS
T ss_pred -cEEEEeeccCCCcccCCCceEEEcCCC--CEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcch
Confidence 22222222 22 45677889999988 666665543 567888876 55544444556678999999999
Q ss_pred EEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 232 VFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 232 ~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
.|++ -+..+.|..|++....... ........+....+..-.+++.. |++.++....+.|.++|.. |+.+..+...
T Consensus 147 ~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 147 TLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred heeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 8774 5677889999997543100 00122223333334578899999 8888887789999999977 9999999887
Q ss_pred CCCeeEEEEE-ecCceeee
Q 012996 310 KGPVNNILVV-RRPLYLNL 327 (451)
Q Consensus 310 ~~~v~~l~~s-~~~~~l~~ 327 (451)
...+++++|. ++...|..
T Consensus 224 ~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSEEEEEEESTTSSEEEE
T ss_pred CCCEEEEEEECCCCCEEEE
Confidence 6789999995 56555544
No 286
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=8e-09 Score=90.41 Aligned_cols=172 Identities=12% Similarity=0.042 Sum_probs=132.2
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC-CEEEEEcCCCcceeeeccccCCeeE
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-DIYMWEVASGRLLKKWHAHYRAVTC 127 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (451)
+|.+++..+. |...+.+...+-. +...+...|.-..+.-++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus 331 ~Gd~ia~VSR--GkaFi~~~~~~~~-iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVSR--GKAFIMRPWDGYS-IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA 406 (668)
T ss_pred CCcEEEEEec--CcEEEECCCCCee-EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence 5777777777 7888877554433 4455667799999988888999999999 799999877664 445567788999
Q ss_pred EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEE
Q 012996 128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKV 203 (451)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~i 203 (451)
+..+++|++++.+.....+-+.|+.++ .....-....+-|+.+.|++++ ++++-+--+| .|++
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididng-----------nv~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNG-----------NVRLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCC-----------CeeEecccccceeEEEEEcCCc--eeEEEecCcceeeeeEEE
Confidence 999999999999998889999999663 1222223456789999999998 8988776655 6899
Q ss_pred EEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996 204 WSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 204 wd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
+|+..++........+.-.+-+|.|++++|+--+
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 9999888776655555556778999999887654
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.20 E-value=7.4e-09 Score=83.94 Aligned_cols=246 Identities=14% Similarity=0.055 Sum_probs=158.8
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECC-----CCcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEccC-
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSED- 133 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~~- 133 (451)
..+.+|+.-+........ -..+.|.| ...+||.|+..|...+|...+.+.. +....|...|+-+.=..+
T Consensus 52 ~sv~i~~~y~N~~~iv~~----y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~ 127 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEF----YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDL 127 (344)
T ss_pred eeeEeccccCCchhhEEe----eecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccc
Confidence 567777765443111111 13444544 4568999999999999999866543 333445444432221111
Q ss_pred CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-
Q 012996 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR- 210 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~- 210 (451)
..-+..++.|.++++.++.-. ... +..|. ..+.++.+++++ .++++.+....|..|.+....
T Consensus 128 ~~~~~i~sndht~k~~~~~~~---------s~~----~~~h~~~~~~ns~~~snd~--~~~~~Vgds~~Vf~y~id~~se 192 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGD---------SNK----FAVHNQNLTQNSLHYSNDP--SWGSSVGDSRRVFRYAIDDESE 192 (344)
T ss_pred ccceeeccCCcceeEEEEecC---------ccc----ceeeccccceeeeEEcCCC--ceEEEecCCCcceEEEeCCccc
Confidence 223667788889999888441 111 11232 237788888888 899999999999999987542
Q ss_pred eeeee---ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEE
Q 012996 211 LLRNI---VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLI 284 (451)
Q Consensus 211 ~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~ 284 (451)
-+..+ .....-.+..|+.....+|++..||.+.|||++....... ....+-..|.+.+..+.|++ -++|+
T Consensus 193 y~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf 268 (344)
T KOG4532|consen 193 YIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA----EISSTRPHHNGAFRVCRFSLYGLLDLLF 268 (344)
T ss_pred eeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh----hhcccCCCCCCceEEEEecCCCcceEEE
Confidence 22222 1445567889999999999999999999999988642111 11223445899999999998 34566
Q ss_pred EEcCCCcEEEEeCCCCceEEEeecCCC--------CeeEEEEEecCceeeecc
Q 012996 285 SGSEDGMVRVWDPITHNIVRMFRLAKG--------PVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 285 s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~l~~s~~~~~l~~~s 329 (451)
-.-.-+.+.+-|++++...+.+..... .|..-.|+.++.-+.+.+
T Consensus 269 ~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~ 321 (344)
T KOG4532|consen 269 ISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN 321 (344)
T ss_pred EecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence 555667899999999877665543222 266666666665554443
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=4e-10 Score=90.74 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=119.9
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcc------------eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRL------------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
++.+.++.+ ..|+++..++.+.....-.+.+ ...+..|.++-.+-+.+-.++-+++++.||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555555543 3466666666655554433322 223333443333333333456799999999999999
Q ss_pred Ccchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEee-----CCCcEEEEEcCCCceee-eeecccceeE
Q 012996 151 LLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSAS-----EDRTCKVWSLLKGRLLR-NIVFPSVIDA 223 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~-~~~~~~~i~~ 223 (451)
.+..... .+... .|.+. .+.+....+ +.+.++. .-+..+.|+++..+.+. .......+.+
T Consensus 118 ~~~~~~~----------~~~i~~~~~~~-as~~~~~~~--~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~ 184 (319)
T KOG4714|consen 118 TDKDLAL----------MSRIPSIHSGS-ASRKICRHG--NSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA 184 (319)
T ss_pred chHHHhh----------hhhcccccccc-cccceeecc--cEEecCCcceEeeccceeeecccccccccccccccccchh
Confidence 8652111 11111 11111 122222222 3333322 22345667665433222 1223344999
Q ss_pred EEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCC
Q 012996 224 IALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 224 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~ 299 (451)
++-+| ....+++|+.||.+-+||.+... .+...+..|..+|+.+-|+| +..|++++.||.+.-||..+
T Consensus 185 l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 185 LCSHPAQQHLVCCGTDDGIVGLWDARNVA--------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhCCcccccEEEEecCCCeEEEEEccccc--------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999 45677788999999999999874 56778889999999999999 88999999999999999763
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=4e-11 Score=106.43 Aligned_cols=215 Identities=16% Similarity=0.222 Sum_probs=155.5
Q ss_pred eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
+..+.+|...|..++--.+.+-+++++.|.+|++|.++..... .....+..++..|+.+|.++.|-.+- +++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~----~~tsaCQfTY~aHkk~i~~igfL~~l--r~i~S 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE----IGTSACQFTYQAHKKPIHDIGFLADL--RSIAS 801 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc----cccceeeeEhhhccCcccceeeeecc--ceeee
Confidence 4567899999999887777888999999999999999653211 12334667889999999999998875 45554
Q ss_pred eeCCCcEEEEEcCCCceeeeee---cccceeEEEECC--CCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP--AEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
.||.|.+||.--++++..+. ..+.+..+..-| +...+.+| +...+++++|.+....... -.+..-.+.
T Consensus 802 --cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E----~kVcna~~P 875 (1034)
T KOG4190|consen 802 --CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE----LKVCNAPGP 875 (1034)
T ss_pred --ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee----EEeccCCCC
Confidence 58899999998887776443 233444444434 34455555 6788999999987642110 112223445
Q ss_pred CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc-cccCCC
Q 012996 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS-SRRHGS 342 (451)
Q Consensus 269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i-w~~~~~ 342 (451)
...+.+++..+ |+.++++-.+|.|.+.|.++|+.+..++........++ .|..+.|+....|.++.+ |-...+
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 57789999999 99999999999999999999999988776544444443 355678888888888877 765444
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.18 E-value=4.5e-08 Score=80.73 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=136.1
Q ss_pred EEECCCCcEEEEeccCCCEEEEEcCCC--cceeeecccc---CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 86 IAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
++.+++|+.||+ -.|..|.|-..++. ..+...+.+. -.=..++|+||+.+|+.+...|+|++||+.....-..
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I- 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI- 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc-
Confidence 567889998887 45667777765543 2223332222 2346799999999999999999999999953111000
Q ss_pred hcccccceecccCCcCceeEEEEeecCC----eeEEEEeeCCCcEEEEEcCC-----Cceeeeee----cccceeEEEEC
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK-----GRLLRNIV----FPSVIDAIALD 227 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~----~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~----~~~~i~~~~~~ 227 (451)
.. .......-...|.++.|..... ...|++-..+|.++-|-+.. .+....+. ++..|.++.++
T Consensus 81 ---~p-~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 81 ---PP-AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred ---Cc-ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 00 0001112345677776654321 13567777788888776532 23333443 47789999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE---ecCCEEEEEcCCCc------EEEEeCC
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY---STGDLLISGSEDGM------VRVWDPI 298 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~l~s~~~dg~------i~iwd~~ 298 (451)
|..++|++|+.... ..+. -.+....+++=.. +|--..++...|+. -.+|.+-
T Consensus 157 p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~ 217 (282)
T PF15492_consen 157 PKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIP 217 (282)
T ss_pred CCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccccccccceeecc
Confidence 99999888875432 0000 0011112222111 12111122222221 2344443
Q ss_pred CCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
+.+...........|..|..||||..||+...+|.+.+|++..-.+
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 3322222223456899999999999999999999999999876443
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=8.4e-09 Score=95.59 Aligned_cols=247 Identities=14% Similarity=0.120 Sum_probs=180.2
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCC------------cEEEEeeCCCcEE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG------------SFLISGSEDGCVR 147 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~s~~~dg~i~ 147 (451)
...-.+++|+|.| ++|.|+. ..|.+.|..+.+.+..+.-|...|+.+.|.|-. -.|+++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3446788999876 5666664 479999999999999999999999999998721 2467788889999
Q ss_pred EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC--eeEEEEeeCCCcEEEEEcCCCceeeeeec-ccceeEE
Q 012996 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKGRLLRNIVF-PSVIDAI 224 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~i~~~ 224 (451)
+||... ...+..+..|..++..++|-+..+ ...++.-....++.+|+..+|+....... +....|+
T Consensus 93 l~d~~~-----------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f 161 (1062)
T KOG1912|consen 93 LVDFVL-----------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCF 161 (1062)
T ss_pred EEEehh-----------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeee
Confidence 999954 334455677888999999987543 25677778888999999999999888774 4455669
Q ss_pred EECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc----------------c---------eeEEEEe
Q 012996 225 ALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK----------------A---------VTCLAYS 278 (451)
Q Consensus 225 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------v~~~~~~ 278 (451)
.++| +.+.+..-+..|.+.+.+.-......... +..+....|.. . ...++|+
T Consensus 162 ~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg--k~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 162 RVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG--KEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred eeCCCCcceEEEEccCceEEEEeccCCCCCCCCc--eeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 9999 77788888888888877764433211111 11111111111 0 1235678
Q ss_pred c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC--ceeeeccCCCCccccccCC
Q 012996 279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP--LYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 279 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~--~~l~~~s~d~~i~iw~~~~ 341 (451)
| -+.++-......+.++|++-..++..+....+.+.-+.+-|++ ..|.+.-.||.+.+|-.+.
T Consensus 240 p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 240 PHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8 3333333456679999999999999988888888888888877 4688899999999998764
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.15 E-value=7.4e-10 Score=89.21 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=121.0
Q ss_pred CeEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec--------ceEeeccCcccCCCCCCccEEEEECCCCc
Q 012996 1 MELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG--------QRFLASSQLREQPSASSGSILYWSWSKPQ 72 (451)
Q Consensus 1 ~e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~l~~~~~d~g~i~vw~~~~~~ 72 (451)
||..|+++. .++.+......++.+...... ....+...+.+ ...+..+..+++++.| |.+.+.+.+...
T Consensus 46 ~~~~lf~~e-~~~~~ss~g~~r~~~~~~~~r-t~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~d-g~~~v~s~~~~~ 122 (319)
T KOG4714|consen 46 AEYILFTGE-TSSQIISLGKGRGRCISLWER-DDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYAD-GSLAVFSTDKDL 122 (319)
T ss_pred hhheeeccc-chhheeeeccceEEEechhhc-ccCcCceeeeeccCCCCCcccccccCCceEecCCC-ceEEEEechHHH
Confidence 567788888 888887777655544432211 11222222222 0023346777888888 999999987622
Q ss_pred eeeeecC--CCCeeEEEECCCCcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCC
Q 012996 73 VEVKSLP--AEPIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDG 144 (451)
Q Consensus 73 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg 144 (451)
....... ...-.+..+...++++.++.- -+..+.|+++..+.+..-......|++++-+| ..+.+++|+.||
T Consensus 123 ~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg 202 (319)
T KOG4714|consen 123 ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDG 202 (319)
T ss_pred hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCC
Confidence 1111111 011122223334555554321 23466676654433322222334599999999 556678889999
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
.+-+||.+.. ..+...+..|+.+++.+.|+|... ..|++++.||.+.-||..+
T Consensus 203 ~~~l~d~rn~----------~~p~S~l~ahk~~i~eV~FHpk~p-~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 203 IVGLWDARNV----------AMPVSLLKAHKAEIWEVHFHPKNP-EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eEEEEEcccc----------cchHHHHHHhhhhhhheeccCCCc-hheeEecCCCcEEEEcCCC
Confidence 9999999762 445667888999999999999765 7899999999999999764
No 293
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.14 E-value=4.9e-10 Score=95.80 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=110.3
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCce----eeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeee
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQV----EVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~ 118 (451)
+++.++++|++..+ ....++++..... .....-...-+++.|..+.....++.. ...+.+|....+.+. .+
T Consensus 70 ~s~~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~ 147 (390)
T KOG3914|consen 70 TSDSGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PI 147 (390)
T ss_pred cCCCceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcc-hh
Confidence 77889999888877 6666666543321 111222344455556555555544443 344555555444444 33
Q ss_pred ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASE 197 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~ 197 (451)
-+|-..++.++|+||+++++++..|..|++-.... ...+.. +.||+..|..+++.++ ..|++++.
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-----------~f~IesfclGH~eFVS~isl~~~---~~LlS~sG 213 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-----------TFVIESFCLGHKEFVSTISLTDN---YLLLSGSG 213 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-----------ccchhhhccccHhheeeeeeccC---ceeeecCC
Confidence 47999999999999999999999999999988732 222333 4579999999999877 57999999
Q ss_pred CCcEEEEEcCCCceeeeeec
Q 012996 198 DRTCKVWSLLKGRLLRNIVF 217 (451)
Q Consensus 198 d~~i~iwd~~~~~~~~~~~~ 217 (451)
|+++++||+.+|+.+..+..
T Consensus 214 D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CCcEEEEecccCCcccccch
Confidence 99999999999998876653
No 294
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=5.1e-10 Score=102.85 Aligned_cols=224 Identities=18% Similarity=0.263 Sum_probs=162.4
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeecccc--CCeeEEEEccCC--cEEEEeeCCCcEEEeeCcc
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHY--RAVTCLVFSEDG--SFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~--~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~ 153 (451)
-.+++..+.++|.|+-+|.++.-| +.+.|+... ....-+ .|. -.|-.+.|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 357888999999999999988876 666777544 333222 232 246678888743 2333334445667899855
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCC
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEH 231 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~ 231 (451)
. ........+.+|...|+++.|.+... ..+++++.|-.+..||+++... +..+. -......+.|+-...
T Consensus 101 s--------s~~aIef~lhghsraitd~n~~~q~p-dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 101 S--------SSNAIEFVLHGHSRAITDINFNPQHP-DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred C--------CccceEEEEecCccceeccccCCCCC-cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCc
Confidence 1 23344556789999999999998765 7899999999999999998653 33333 456677889988666
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce--EEEee
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI--VRMFR 307 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~ 307 (451)
.+.+.+....|++||++.+. .++..+++|...|+.+.|.. ...+.+++.||+|++||...... -+++
T Consensus 172 ~vlasshg~~i~vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v- 242 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV- 242 (1081)
T ss_pred chhhhccCCceEEEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-
Confidence 66666777899999999886 77889999999999999988 77899999999999999875432 2222
Q ss_pred cCCCCeeEEEEEecC
Q 012996 308 LAKGPVNNILVVRRP 322 (451)
Q Consensus 308 ~~~~~v~~l~~s~~~ 322 (451)
.-..+|+.-.+.|-|
T Consensus 243 tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFG 257 (1081)
T ss_pred cccCcceeccccccC
Confidence 224566666666644
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.3e-10 Score=94.86 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=122.6
Q ss_pred cCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-----cceeeeccccCCeeEE
Q 012996 54 EQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWHAHYRAVTCL 128 (451)
Q Consensus 54 ~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~ 128 (451)
++.|.+ ..|.+-|+.++-..... ....|.++.|...++++..|+.+|.|..+|++.+ .+...+ -|...|+++
T Consensus 228 fs~G~s-qqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLS-QQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred eccccc-ceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 444554 68888888877654433 5678999999999999999999999999999865 333334 488999999
Q ss_pred EEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 129 VFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 129 ~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
..-. ++++|++.+.+|.|++||++.. ....-+..+.+|...-.-+-++-+..+..+++++.|...+||.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~--------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRAT--------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhh--------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 8776 7889999999999999999752 222347778888776666666555555789999999999999999
Q ss_pred CCceeeeeecccc
Q 012996 208 KGRLLRNIVFPSV 220 (451)
Q Consensus 208 ~~~~~~~~~~~~~ 220 (451)
.+..+.+++.+..
T Consensus 377 ~ghLl~tipf~~s 389 (425)
T KOG2695|consen 377 SGHLLCTIPFPYS 389 (425)
T ss_pred cCceeeccCCCCc
Confidence 9999999886544
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.08 E-value=1.4e-07 Score=80.99 Aligned_cols=222 Identities=17% Similarity=0.128 Sum_probs=136.0
Q ss_pred CccEEEEECCCCceeeeecCCCCeeEEE--ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 60 SGSILYWSWSKPQVEVKSLPAEPIKPIA--ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 60 ~g~i~vw~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
+|.|..||..+++............... ..+++..+++++.++.|+.||..+|+.+..+.. .+.+..... .++..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-eccccc
Confidence 4899999999888877765432233333 333566777778899999999999998877764 222222122 234566
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF 217 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 217 (451)
+.++.++.+..+|..++....... ........ ..........+ ..++.+..++.|..+|+.+|+.+.....
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~------~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIY------LTSSPPAG-VRSSSSPAVDG--DRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEE------E-SSCTCS-TB--SEEEEET--TEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccceeeeEecccCCcceeeeec------cccccccc-cccccCceEec--CEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 777788899999986643211100 00000011 11122222224 6788888899999999999999887763
Q ss_pred cc-c----------eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996 218 PS-V----------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 218 ~~-~----------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s 285 (451)
.. . +..-....++ .+++++.++.+..+|+.++. .+-... ...+..+ ... +..|+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~---------~~w~~~--~~~~~~~-~~~~~~~l~~ 217 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE---------KLWSKP--ISGIYSL-PSVDGGTLYV 217 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---------EEEEEC--SS-ECEC-EECCCTEEEE
T ss_pred CCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---------EEEEec--CCCccCC-ceeeCCEEEE
Confidence 22 1 1122222234 77778878864444888874 122221 2223331 223 788888
Q ss_pred EcCCCcEEEEeCCCCceEEE
Q 012996 286 GSEDGMVRVWDPITHNIVRM 305 (451)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~ 305 (451)
++.++.|..||+.+++.+-+
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999999987643
No 297
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.9e-07 Score=86.12 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=129.6
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcE-EEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTY-IAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF 136 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 136 (451)
..|.+=|.+.......... .....-.|+|||+. ++..+.+ ..|+++|+.+++...... ..+......|+|||+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 4566656654443323223 37788999999985 5544333 459999998886554433 4455667889999987
Q ss_pred EEE-eeCC--CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC--cEEEEEcCCCce
Q 012996 137 LIS-GSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRL 211 (451)
Q Consensus 137 l~s-~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~ 211 (451)
++. .+.+ ..|.++|+.++ . ...+..+........|+|++. .++++....+ .|++.|+.+++.
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g-----------~-~~~LT~~~~~d~~p~~SPDG~-~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTK-----------T-LTQITNYPGIDVNGNFVEDDK-RIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEEEEccCCCcEEEEEECCCC-----------c-EEEcccCCCccCccEECCCCC-EEEEEECCCCCceEEEEECCCCCe
Confidence 664 3334 45777777441 1 222333333233457999984 3444443334 577888887765
Q ss_pred eeeeecccceeEEEECCCCCEEEEEeCC---------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996 212 LRNIVFPSVIDAIALDPAEHVFYAGSRD---------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (451)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 281 (451)
.+...... ....|+|+|+.++..... ..|++.|+.++.. . .+... .......|+| |+
T Consensus 314 ~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------~---~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 314 EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------R---RLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------E---ECCCC-CCcCCeEECCCCC
Confidence 43332221 234899999988776543 3678888876531 1 22222 2233578999 88
Q ss_pred EEEEEcCC-C--cEEEEeCCCCceEEEeecCCCCe
Q 012996 282 LLISGSED-G--MVRVWDPITHNIVRMFRLAKGPV 313 (451)
Q Consensus 282 ~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~v 313 (451)
.++..+.+ + .+.+.++. +.....+....+.+
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~ 414 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKI 414 (419)
T ss_pred EEEEEEccCCcEEEEEEecC-CCeeEEeecCCCcc
Confidence 76665543 2 36666664 33333444333433
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-09 Score=93.83 Aligned_cols=219 Identities=17% Similarity=0.187 Sum_probs=161.7
Q ss_pred ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC
Q 012996 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR 199 (451)
Q Consensus 121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~ 199 (451)
|...|+.+..+ -.+++.+++.||.++.|--.. ......+..+..|.+.|.+++.+.++ .++.|.+. |.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~--------isGvEfVKhFraHL~~I~sl~~S~dg--~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSR--------ISGVEFVKHFRAHLGVILSLAVSYDG--WLFRSVEDPDH 76 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCC--------ccceeehhhhHHHHHHHHhhhccccc--eeEeeccCccc
Confidence 77777776554 457899999999999998632 12344567778899999999999988 78888777 99
Q ss_pred cEEEEEcCCCceeeeeecccceeEEEECC-CC---CEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDP-AE---HVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (451)
Q Consensus 200 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~---~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (451)
.++++|+.+-..+.-+........+.|.. .| ..++++ -.+|.+.++|-..... +....-.-|..+|.+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q~~~fkklH~sPV~~ 149 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------QDGYFKKLHFSPVKK 149 (558)
T ss_pred ceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------ccceecccccCceEE
Confidence 99999998876665555433333334432 22 134433 4678999999877542 334455569999999
Q ss_pred EEEec-CCEEEEEcCCCcEEEEeCCC------CceE---------EEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 275 LAYST-GDLLISGSEDGMVRVWDPIT------HNIV---------RMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 275 ~~~~~-~~~l~s~~~dg~i~iwd~~~------~~~~---------~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
+.+++ ++.+++....|.|.-|.... .+.. ..+.-..+..+++.|+|+|..+++-+.|..|+++.
T Consensus 150 i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 150 IRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred EEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 99999 99999999999999998762 1111 12223356789999999999999999999999999
Q ss_pred cCCCCCCCccccccccccc
Q 012996 339 RHGSQLPPPLDKYVTSADE 357 (451)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~ 357 (451)
+.++.+.+.++........
T Consensus 230 ~KtGklvqeiDE~~t~~~~ 248 (558)
T KOG0882|consen 230 FKTGKLVQEIDEVLTDAQY 248 (558)
T ss_pred eccchhhhhhhccchhhhh
Confidence 9999888877666544433
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.8e-09 Score=93.66 Aligned_cols=253 Identities=14% Similarity=0.092 Sum_probs=169.0
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--C-cceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcch
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTV 154 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~ 154 (451)
|.+.|+.+..+ -.+++.+++.||.++.|.-.. + +.+..+..|.+.|.+++.+-++.++.|.+. |..++++|+.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666666554 367899999999999998543 1 345566789999999999999999999777 999999999652
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCc-eeeeee--cccceeEEEECCCC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-LLRNIV--FPSVIDAIALDPAE 230 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~--~~~~i~~~~~~~~~ 230 (451)
.. .....+..-++.+..+. ++. .....-++.-.++.+.++|-.... ....+. |..+|..+-+.|.+
T Consensus 87 Dm---------inmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~ 156 (558)
T KOG0882|consen 87 DM---------INMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG 156 (558)
T ss_pred ch---------hhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc
Confidence 21 11111222222222211 111 111223344467889999976544 222222 78899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCC------CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 231 HVFYAGSRDGSIYIAALNAESPS------TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
..+++....|.|..|.....-.. .....-..+..+........++.|+| +..+.+-+.|..|++++..+++.+
T Consensus 157 Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 157 DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 99999999999999998741110 00000111223333456788999999 999999999999999999998876
Q ss_pred EEee--------------------------------cC-CCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 304 RMFR--------------------------------LA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 304 ~~~~--------------------------------~~-~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+.+. -| ...-+.+.|...|++|+.++.=| |++.++.+..
T Consensus 237 qeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 237 QEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred hhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 6553 11 12456778888999998876433 3444444443
No 300
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=3.2e-07 Score=84.67 Aligned_cols=214 Identities=13% Similarity=-0.008 Sum_probs=127.7
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc-ccCCCCC--CccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL-REQPSAS--SGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~d--~g~i~vw~~~~~~~~~~~~~~~~v~~~~~ 88 (451)
...|.+=|.. |...+.+... ....... |+|+|+. ++..+.. ...|.++|+.+++........+......|
T Consensus 168 ~~~l~~~d~d-g~~~~~~~~~----~~~~~p~--wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~ 240 (419)
T PRK04043 168 KSNIVLADYT-LTYQKVIVKG----GLNIFPK--WANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDV 240 (419)
T ss_pred cceEEEECCC-CCceeEEccC----CCeEeEE--ECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEE
Confidence 3456665654 3333333221 1333444 9999985 5543332 26799999988877665555566777889
Q ss_pred CCCCcEEEEe-cc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CC--cEEEeeCcchhhhhhhhc
Q 012996 89 NSHGTYIAGG-GQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DG--CVRIWSLLTVFEECESQR 162 (451)
Q Consensus 89 ~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~ 162 (451)
+|||+.++.. +. +..|+++|+.+++.. .+..+........|+|||+.|+-.+. .+ .|.++|+.++.
T Consensus 241 SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~------- 312 (419)
T PRK04043 241 SKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS------- 312 (419)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-------
Confidence 9999877654 32 346888898777643 34334433345689999987776553 33 46677774421
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEeeCC---------CcEEEEEcCCCceeeeeecccceeEEEECCCCCEE
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l 233 (451)
.. ..+..+. . ...|+|++ +.++..+.. ..|.+.|+.++... .+..........|+|+|+.+
T Consensus 313 --~~-rlt~~g~--~--~~~~SPDG--~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I 382 (419)
T PRK04043 313 --VE-QVVFHGK--N--NSSVSTYK--NYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSI 382 (419)
T ss_pred --eE-eCccCCC--c--CceECCCC--CEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEE
Confidence 10 1111111 1 23789988 555544432 36888898877643 33323334468899999988
Q ss_pred EEEeCCC---cEEEEEccCC
Q 012996 234 YAGSRDG---SIYIAALNAE 250 (451)
Q Consensus 234 ~~~~~dg---~i~i~d~~~~ 250 (451)
+..+.++ .+.+.++...
T Consensus 383 ~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 383 MFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEccCCcEEEEEEecCCC
Confidence 7665433 3666666553
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.02 E-value=2e-09 Score=89.06 Aligned_cols=207 Identities=16% Similarity=0.259 Sum_probs=142.4
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc------------CceeEEEEeecCCe
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT------------LRITDIVIGYGGVS 189 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~i~~~~~~~~ 189 (451)
...|+++.|...|.+|++|...|+|.+|.-..... -.......+.+|. ..|..+.|..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc------cchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 45789999999999999999999999998654221 0112223344443 34777888877666
Q ss_pred eEEEEeeCCCcEEEEEcCCCce-------------------e-----------------------eee--ecccceeEEE
Q 012996 190 ATIVSASEDRTCKVWSLLKGRL-------------------L-----------------------RNI--VFPSVIDAIA 225 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~-------------------~-----------------------~~~--~~~~~i~~~~ 225 (451)
..++..+.|.+|++|.+..... + +.. .|+..+.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 7788888999999998854310 0 000 1455678889
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-----CcceeEEEEec--CCEEEEEcCCCcEEEEeCC
Q 012996 226 LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-----SKAVTCLAYST--GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~ 298 (451)
+..+...++++ .|-+|.+|++.-.... ..+..++.| ..-|++..|+| ...+.-.++.|.|++-|++
T Consensus 180 ~NsD~et~lSa-DdLrINLWnl~i~D~s------FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 180 FNSDKETLLSA-DDLRINLWNLEIIDGS------FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred ecCchheeeec-cceeeeeccccccCCc------eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 98888777654 5778999998765422 122233333 35688999999 7788888899999999987
Q ss_pred CCc------eEEE----------eecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 299 THN------IVRM----------FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 299 ~~~------~~~~----------~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
... .+.. +..-...|..+.|+++|+++++-+. .++++||+...
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 321 1111 1122347899999999999988643 68999998754
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.1e-07 Score=89.50 Aligned_cols=207 Identities=16% Similarity=0.189 Sum_probs=141.7
Q ss_pred ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC-eeEEEEccCCcEEEEeeCCCc-----EEEeeCcchhhhhhhh
Q 012996 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA-VTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQ 161 (451)
Q Consensus 88 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~ 161 (451)
|++.+..++.|+.+|.|.+++ ++-+.++.++++... |..+....+..+|++.+.|+. ++||+++......+
T Consensus 31 ~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s-- 107 (933)
T KOG2114|consen 31 CSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS-- 107 (933)
T ss_pred EcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC--
Confidence 577788999999999999887 455666888888777 555544445578888877654 89999976432111
Q ss_pred cccccce--ec-----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC---CC--ceeeeeecccceeEEEECCC
Q 012996 162 RASHLYL--HS-----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL---KG--RLLRNIVFPSVIDAIALDPA 229 (451)
Q Consensus 162 ~~~~~~~--~~-----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~---~~--~~~~~~~~~~~i~~~~~~~~ 229 (451)
..++ +. +...+.++.+++++.+- ..+++|-.+|.|..+.=. .. +.........+|+.+++..+
T Consensus 108 ---P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l--~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 108 ---PQCLYEHRIFTIKNPTNPSPASSLAVSEDL--KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred ---cceeeeeeeeccCCCCCCCcceEEEEEccc--cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 2222 11 22246678889998886 899999999999998421 11 11122235689999999988
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee-
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR- 307 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 307 (451)
+..++-...-..|.+|.+.... .....+..|...++|..+++ ...|++++.. -+.+|+.....+-..+.
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred CceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecC
Confidence 8773333334578899888543 22445777888999999999 3336665544 59999988766666676
Q ss_pred cCCC
Q 012996 308 LAKG 311 (451)
Q Consensus 308 ~~~~ 311 (451)
+|..
T Consensus 254 g~kk 257 (933)
T KOG2114|consen 254 GEKK 257 (933)
T ss_pred CCeE
Confidence 5543
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.00 E-value=2e-07 Score=77.00 Aligned_cols=233 Identities=14% Similarity=0.148 Sum_probs=131.9
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 119 (451)
.+.+|+.||+.-. ..|.+=..+..-. .......-.=..++||||+.+||.+...|+|++||+.. ..+..+.
T Consensus 5 ~~~~Gk~lAi~qd--~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 5 LSSDGKLLAILQD--QCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred ecCCCcEEEEEec--cEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 4566776666544 4666655443221 11111223457899999999999999999999999864 3333332
Q ss_pred c-------ccCCeeEEEEccC------CcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee--cccC-CcCceeEEEE
Q 012996 120 A-------HYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH--SFTG-HTLRITDIVI 183 (451)
Q Consensus 120 ~-------~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~i~~ 183 (451)
. -...|..+.|.+. ...|++-..+|.++-|-+..+.. ......+ .+.. +...|.++.+
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~------q~y~e~hsfsf~~~yp~Gi~~~vy 155 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN------QGYQENHSFSFSSHYPHGINSAVY 155 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC------CcceeeEEEEecccCCCceeEEEE
Confidence 1 2356777777542 12466777788888777632111 1222222 2333 4778999999
Q ss_pred eecCCeeEEEEeeCCCc-----------EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996 184 GYGGVSATIVSASEDRT-----------CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESP 252 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~-----------i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (451)
++.. ++|+.|+.... +..|.+-++.+... ...+.+...-...... .+|.+-+.
T Consensus 156 ~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~v~~~~~~~~~~~~~~---~~~~~~~~-- 219 (282)
T PF15492_consen 156 HPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---------QVTSSEDDITASSKRR---GLLRIPSF-- 219 (282)
T ss_pred cCCC--CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---------EccccCcccccccccc---ceeeccce--
Confidence 9987 66666654322 22222222111110 0001111111111111 12222111
Q ss_pred CCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 253 STSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
............|..|..|| +..||+...+|.|.+|++.+-++.+.+..+.
T Consensus 220 -------~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 220 -------KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred -------eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 11111223467899999999 9999999999999999999988877766543
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=1.7e-09 Score=90.67 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=119.0
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-----cee
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-----RLL 212 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~ 212 (451)
++.+.+-.+.+-|+.++. ...|. ..+.|.++.|...+ ++++.|+..|.|..+|++.+ .+.
T Consensus 228 fs~G~sqqv~L~nvetg~------------~qsf~-sksDVfAlQf~~s~--nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH------------QQSFQ-SKSDVFALQFAGSD--NLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred ecccccceeEEEEeeccc------------ccccc-cchhHHHHHhcccC--CeeEecccCCcEEEEEeeecccCCCcce
Confidence 455566678888886631 12233 56778888888766 89999999999999999864 566
Q ss_pred eeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE--Eec-CCEEEEEcC
Q 012996 213 RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA--YST-GDLLISGSE 288 (451)
Q Consensus 213 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~-~~~l~s~~~ 288 (451)
..+.|++.|+++..-. ++.+|++.+.+|+|.+||++..+.. .-+.++.+|...-.-+- ..+ ...+++++.
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCK------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcc------cceeeeecccccccccccccccccceEEEccC
Confidence 7788999999998877 8899999999999999999986431 23677888866544433 345 778899999
Q ss_pred CCcEEEEeCCCCceEEEeecCC
Q 012996 289 DGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 289 dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
|...+||.+.++.++.++....
T Consensus 367 DcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eeEEEEEecccCceeeccCCCC
Confidence 9999999999999999987543
No 305
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.99 E-value=9e-08 Score=82.23 Aligned_cols=228 Identities=16% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (451)
+|+|..||..+|+.+.+...... .....+. ..+++..+++++.+ +.|..||..+++........+++...... .
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~---~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-IGGPVAT---AVPDGGRVYVASGD-GNLYALDAKTGKVLWRFDLPGPISGAPVV-D 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-CSSEEET---EEEETTEEEEEETT-SEEEEEETTTSEEEEEEECSSCGGSGEEE-E
T ss_pred CCEEEEEECCCCCEEEEEECCCC-CCCccce---EEEeCCEEEEEcCC-CEEEEEECCCCCEEEEeeccccccceeee-c
Confidence 78999999999999988864221 2222221 23356666666555 99999999999887766554443333222 3
Q ss_pred CcEEEEeccCCCEEEEEcCCCcceeee-cccc---CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccc
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLKKW-HAHY---RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY 167 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 167 (451)
+..+++++.++.++.+|..+|+.+... .... ..........++..++.+..++.|..+|+.++.............
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 455666667889999999999998874 3221 111222233337788888889999999997643211111000000
Q ss_pred eecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc
Q 012996 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL 247 (451)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 247 (451)
...+. ....+.+-....+ ..++.++.++.+..+|+.+++.+.... ...+..+ ..+.+..+++++.++.+..||+
T Consensus 156 ~~~~~-~~~~~~~~~~~~~---~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPIS-SFSDINGSPVISD---GRVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EE-EETTEEEEEECCT---TEEEEECCTSSEEEEETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred Cccee-eecccccceEEEC---CEEEEEcCCCeEEEEECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 00000 0011112122222 366666667754444999998665333 3333331 3467788888889999999999
Q ss_pred cCCC
Q 012996 248 NAES 251 (451)
Q Consensus 248 ~~~~ 251 (451)
.+++
T Consensus 230 ~tG~ 233 (238)
T PF13360_consen 230 KTGK 233 (238)
T ss_dssp TTTE
T ss_pred CCCC
Confidence 9874
No 306
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=3e-07 Score=85.17 Aligned_cols=256 Identities=13% Similarity=0.085 Sum_probs=152.4
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
.++.++ .+|.+..+|..+|+.+.+..... .+.+.. ...++ .++++..+ |.+.-+|..+++.........+.
T Consensus 122 ~v~v~~-~~g~l~ald~~tG~~~W~~~~~~----~~~ssP--~v~~~-~v~v~~~~-g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 122 KVYIGS-EKGQVYALNAEDGEVAWQTKVAG----EALSRP--VVSDG-LVLVHTSN-GMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred EEEEEc-CCCEEEEEECCCCCCcccccCCC----ceecCC--EEECC-EEEEECCC-CEEEEEEccCCCEeeeecCCCCc
Confidence 345566 78999999999999988775432 122222 22334 34445555 89999999999887665432211
Q ss_pred eEE--EECC--CCcEEEEeccCCCEEEEEcCCCcceeeeccccC-------CeeEEEEcc--CCcEEEEeeCCCcEEEee
Q 012996 84 KPI--AANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-------AVTCLVFSE--DGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 84 ~~~--~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~s~~~dg~i~vwd 150 (451)
..+ .-+| .+..++.++.+|.+..+|..+|+.+........ ....+.-+| .+..++.++.+|.+..+|
T Consensus 193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald 272 (394)
T PRK11138 193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALD 272 (394)
T ss_pred ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEE
Confidence 100 0122 133566678889999999999987665431110 011111222 245677778899999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-c-cceeEEEECC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVIDAIALDP 228 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~i~~~~~~~ 228 (451)
..++..... ..+. ....+.. .+ ..++.++.+|.+..+|..+++.+..... . ....+..+
T Consensus 273 ~~tG~~~W~---------~~~~----~~~~~~~--~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-- 333 (394)
T PRK11138 273 LRSGQIVWK---------REYG----SVNDFAV--DG--GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-- 333 (394)
T ss_pred CCCCCEEEe---------ecCC----CccCcEE--EC--CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--
Confidence 976432111 1111 1111222 23 5778888999999999999987665431 1 11111111
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEecCCEEEEEcCCCcEEEEeC
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~iwd~ 297 (451)
.+..+++++.+|.++.+|..+++ .+....-....+.+ ..+. +..|+.++.||.|..++.
T Consensus 334 ~~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 YNGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence 36788899999999999998874 23333222222221 1111 678999999999988764
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=1.5e-06 Score=74.23 Aligned_cols=231 Identities=18% Similarity=0.231 Sum_probs=154.6
Q ss_pred CCeeEEEECC-CCcEEEEeccCCC-EEEEEcCCCcceeeeccccCCe--eEEEEccCCcEEEEeeC-----CCcEEEeeC
Q 012996 81 EPIKPIAANS-HGTYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSE-----DGCVRIWSL 151 (451)
Q Consensus 81 ~~v~~~~~~~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~-----dg~i~vwd~ 151 (451)
.....++.+| ....++.+-.-|. ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 4456788889 5566677766665 7899999998887765433322 13689999999998643 578999999
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee------------------CCCcEEEEEcCCCceee
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------EDRTCKVWSLLKGRLLR 213 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~------------------~d~~i~iwd~~~~~~~~ 213 (451)
.. ....+..+..|.-.-..+.+.+++ ..|+.+. .+-.+.+.|..+|+.+.
T Consensus 85 ~~----------~~~ri~E~~s~GIGPHel~l~pDG--~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 85 AR----------GYRRIGEFPSHGIGPHELLLMPDG--ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred cC----------CcEEEeEecCCCcChhhEEEcCCC--CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee
Confidence 52 345566677776666778888887 4444432 13356777888898887
Q ss_pred eee-----cccceeEEEECCCCCEEEEEeCCCc-------EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C
Q 012996 214 NIV-----FPSVIDAIALDPAEHVFYAGSRDGS-------IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G 280 (451)
Q Consensus 214 ~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 280 (451)
... +...|..+++.++|..++..-..|. +.+++....-.... .+......-.+.+-+|++++ +
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~----~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLP----APEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceecc----CChHHHHhhCCceEEEEEeCCC
Confidence 754 3457999999999887777654442 33333332110000 00011223457899999999 7
Q ss_pred CEEEEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996 281 DLLISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 281 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
.++++.+ ..|.+.+||..+++.+...... .+..++-.+++ ++++.+.
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCCEeeccccC--ceeeeeecCCc-eEEeCCC
Confidence 7665544 5778999999999999887654 56777877777 5665543
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=1.9e-08 Score=94.26 Aligned_cols=286 Identities=15% Similarity=0.103 Sum_probs=162.2
Q ss_pred EeeccCcccCCCCC---CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996 46 FLASSQLREQPSAS---SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (451)
Q Consensus 46 ~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 122 (451)
|+|...++|+++.. .|.|.||- ++++......-+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|.
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~ 101 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHP 101 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCC
Confidence 78888887776532 38888885 444433222233457789999999999999999999999987777666667899
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh-----hccccc--ceec---------------ccCCcCce--
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES-----QRASHL--YLHS---------------FTGHTLRI-- 178 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-----~~~~~~--~~~~---------------~~~~~~~i-- 178 (451)
.+|..+.||++|..++++..-|.+.+|........... ...... .... ..+....+
T Consensus 102 a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~ 181 (1416)
T KOG3617|consen 102 APIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDE 181 (1416)
T ss_pred CCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcc
Confidence 99999999999999999999999999987521110000 000000 0000 00000000
Q ss_pred ----------eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 179 ----------TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 179 ----------~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
.++.-+....+..++.++.+|+|+..|- .|+........+.| .+-|.+...-+.+-..+-++.++-..
T Consensus 182 ~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~ 259 (1416)
T KOG3617|consen 182 PFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSEV-QMLFMGYCEAISIIIEFLRDCLIFVL 259 (1416)
T ss_pred cccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccchH-HHHHhcccceEEEEeeeceeeEEEec
Confidence 0111111112367778888888888873 44444443333221 12233322222222222222222111
Q ss_pred CCCCC-------------CC--------CCC-ceee-eeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC-CC---C
Q 012996 249 AESPS-------------TS--------SYG-MHII-GSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP-IT---H 300 (451)
Q Consensus 249 ~~~~~-------------~~--------~~~-~~~~-~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~-~~---~ 300 (451)
..... .. ..+ ..+. ..-......++|++++. +..|..|...|++.+|-- .+ |
T Consensus 260 ~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g 339 (1416)
T KOG3617|consen 260 AKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQG 339 (1416)
T ss_pred CCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccC
Confidence 10000 00 000 0000 00011246799999999 999999999999999953 22 1
Q ss_pred ce---EEEe---ecCCCCeeEEEEEecCceeeeccCCCCc
Q 012996 301 NI---VRMF---RLAKGPVNNILVVRRPLYLNLGSFSNPH 334 (451)
Q Consensus 301 ~~---~~~~---~~~~~~v~~l~~s~~~~~l~~~s~d~~i 334 (451)
.+ ..++ ....+.|+.+.|.|--..++..+....+
T Consensus 340 ~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ 379 (1416)
T KOG3617|consen 340 DPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVV 379 (1416)
T ss_pred CCCcceEEecCchhhccceEEEEeccccchhhhhhhhhee
Confidence 11 2222 2345689999999977666665544433
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=1.8e-08 Score=95.08 Aligned_cols=183 Identities=20% Similarity=0.308 Sum_probs=141.6
Q ss_pred CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF 171 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 171 (451)
+..++.|+-...+..+|+++.+..+...-..+.|.-++. +++++++|...|+|.+-|. .....++++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~-----------~s~~~iht~ 213 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDP-----------NSFETIHTF 213 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecC-----------CcCceeeee
Confidence 456777777788999999988877776555555666665 4889999999999999999 456788999
Q ss_pred cCCcCceeEEEEeecCCeeEEEEeeC---------CCcEEEEEcCCCceeeeeecccceeEEEECC-CCCEEEEEeCCCc
Q 012996 172 TGHTLRITDIVIGYGGVSATIVSASE---------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGS 241 (451)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 241 (451)
..|++.|.++.. .| +.|++++. |..|++||++..+.+..+..+....-+.|.| -...+++++..|.
T Consensus 214 ~aHs~siSDfDv--~G--NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 214 DAHSGSISDFDV--QG--NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred eccccceeeeec--cC--CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccc
Confidence 999999988765 33 68888775 5568999999998888888766667788888 4567888999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
..+.|..+.... ..-+..+......+..+.+++ ++.++.|..+|.|.+|.
T Consensus 290 ~q~vd~~~lsNP-----~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNP-----PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCC-----ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 999994432210 011223333445699999999 99999999999999997
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.93 E-value=1.9e-06 Score=74.20 Aligned_cols=214 Identities=18% Similarity=0.190 Sum_probs=135.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEe-eccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFL-ASSQLREQPSASSGSILYWSWSKPQVEVKSL--- 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--- 78 (451)
.++++.- ..+.|..||..+++... +.... ...+. +. +++.++++. . +.+.++|..++.......
T Consensus 13 ~l~~~D~-~~~~i~~~~~~~~~~~~-~~~~~-----~~G~~--~~~~~g~l~v~~-~--~~~~~~d~~~g~~~~~~~~~~ 80 (246)
T PF08450_consen 13 RLYWVDI-PGGRIYRVDPDTGEVEV-IDLPG-----PNGMA--FDRPDGRLYVAD-S--GGIAVVDPDTGKVTVLADLPD 80 (246)
T ss_dssp EEEEEET-TTTEEEEEETTTTEEEE-EESSS-----EEEEE--EECTTSEEEEEE-T--TCEEEEETTTTEEEEEEEEET
T ss_pred EEEEEEc-CCCEEEEEECCCCeEEE-EecCC-----CceEE--EEccCCEEEEEE-c--CceEEEecCCCcEEEEeeccC
Confidence 3455555 67889999987766542 22211 23333 66 565555544 3 456666988876543321
Q ss_pred ---CCCCeeEEEECCCCcEEEEeccC--------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcE
Q 012996 79 ---PAEPIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCV 146 (451)
Q Consensus 79 ---~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i 146 (451)
.....+.+++.|+|++.++.... |.|..++.. ++... +...-...+.|+|+|+++.|+ +-+..+.|
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeeccccccee
Confidence 34578899999999977765433 457777765 44333 333456678999999998776 55667888
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc-cceeEEE
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIA 225 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~i~~~~ 225 (451)
..+++....... ........+....+....+++..++ ++.++....+.|.++|.. |+.+..+..+ ..+++++
T Consensus 159 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 159 WRFDLDADGGEL----SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp EEEEEETTTCCE----EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred EEEeccccccce----eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 888885311000 0111222233333457889998877 777777789999999987 9988888866 7899999
Q ss_pred E-CCCCCEEEEEe
Q 012996 226 L-DPAEHVFYAGS 237 (451)
Q Consensus 226 ~-~~~~~~l~~~~ 237 (451)
| -++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 9 46767776654
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.91 E-value=2.8e-06 Score=80.61 Aligned_cols=293 Identities=16% Similarity=0.175 Sum_probs=161.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCC-C--ceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeeecC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPP-H--GLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKSLP 79 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~--~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~~~ 79 (451)
.+..++ .++.|.-.|..+|+.+.++....... . .+..-. ....+ ..++.++.+ |.|.-+|.++++...+...
T Consensus 63 ~vy~~~-~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g--~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 63 DMYFTT-SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRG--VAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EEEEeC-CCCcEEEEECCCChhhceeCCCCCccccccccccCC--cEEccCCeEEEecCC-CeEEEEECCCCCEeeeecC
Confidence 455666 78999999999999988775433200 0 011101 11122 555566666 9999999999988876543
Q ss_pred CCCe---eEEEECC--CCcEEEEec---------cCCCEEEEEcCCCcceeeeccccC--------------------Ce
Q 012996 80 AEPI---KPIAANS--HGTYIAGGG---------QSGDIYMWEVASGRLLKKWHAHYR--------------------AV 125 (451)
Q Consensus 80 ~~~v---~~~~~~~--~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~v 125 (451)
...+ ..+.-+| .+..+++++ .+|.+..+|..+|+.+..+..... .+
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 3321 0111122 124455553 367899999999998877643211 01
Q ss_pred -eEEEEccCCcEEEEeeCCC------------------cEEEeeCcchhhhhhhhcccccceecccCCcCce-eEEEEee
Q 012996 126 -TCLVFSEDGSFLISGSEDG------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGY 185 (451)
Q Consensus 126 -~~~~~~~~~~~l~s~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~ 185 (451)
....+.+.+..++.++.++ .|.-+|..++........... ....+.....++ ..+. .-
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~-~~~~~~~~s~p~~~~~~-~~ 296 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH-DLWDYDGPNQPSLADIK-PK 296 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC-CCcccccCCCCeEEecc-cc
Confidence 1234444456677776665 688888866433221110000 000001111111 1111 01
Q ss_pred cCC-eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE------------------eCCCcEEEEE
Q 012996 186 GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG------------------SRDGSIYIAA 246 (451)
Q Consensus 186 ~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~i~d 246 (451)
++. ...++.++.+|.+...|..+|+.+...... ...++.+| ..++++ ..+|.+.-.|
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 121 136788889999999999999998876532 11233444 334332 2357788888
Q ss_pred ccCCCCCCCCCCceeeeeeccCCcce--eEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996 247 LNAESPSTSSYGMHIIGSLSDHSKAV--TCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 308 (451)
..+++........... ....-..+. ..+... +..++.++.||.|+.+|..+|+.+.+++.
T Consensus 373 ~~tG~~~W~~~~~~~~-~~~~~g~~~~~~~~~~~-g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 373 PKTGKVVWEKREGTIR-DSWNIGFPHWGGSLATA-GNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCCcEeeEeeCCccc-cccccCCcccCcceEec-CCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8877533211100000 000000111 112222 68899999999999999999999998875
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.3e-09 Score=102.25 Aligned_cols=212 Identities=16% Similarity=0.186 Sum_probs=151.7
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFE 156 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~ 156 (451)
+....+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+.+.-+.||..+++.+.-. -..+|++..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s--- 1176 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS--- 1176 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc---
Confidence 467899999999999999999999999999999999999999999999999999998887665543 467899854
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----cccceeEEEECCCCC
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEH 231 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~ 231 (451)
...+.+++.+ -.++.|+... ..-+.|+......+||+.++..+.++- ....-++..|+|+..
T Consensus 1177 -------~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1177 -------TGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred -------ccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc
Confidence 2233444443 2356676654 344455555678999999998877642 223346788999888
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
+++- || .+||.+... .+..+......+ .=.|+| |.-++.-+ .|||+++.++++....-
T Consensus 1244 LIln---dG--vLWDvR~~~---------aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L- 1302 (1516)
T KOG1832|consen 1244 LILN---DG--VLWDVRIPE---------AIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL- 1302 (1516)
T ss_pred eEee---Cc--eeeeeccHH---------HHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCccc-
Confidence 7763 44 479998752 233333222111 225788 77777654 38999999988877643
Q ss_pred CCeeEEEEEecCceeeec
Q 012996 311 GPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 311 ~~v~~l~~s~~~~~l~~~ 328 (451)
.-..+.|+..|..+...
T Consensus 1303 -dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1303 -DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -cceEEEeccCccchhhh
Confidence 23677888888766544
No 313
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.90 E-value=2.5e-06 Score=69.43 Aligned_cols=304 Identities=14% Similarity=0.069 Sum_probs=165.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.+++.|+ -.+.+.--|..+|+...+-- .. ..+.+-+ .. -|.+++.|+.. |.+++.+.+++.........+.
T Consensus 24 T~v~igS-Hs~~~~avd~~sG~~~We~i-lg---~RiE~sa--~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 24 TLVVIGS-HSGIVIAVDPQSGNLIWEAI-LG---VRIECSA--IV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred eEEEEec-CCceEEEecCCCCcEEeehh-hC---ceeeeee--EE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhh
Confidence 3566677 77888888888888775432 11 2233332 22 46678888888 9999999999977766655555
Q ss_pred eeEEE-ECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 83 IKPIA-ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 83 v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
|.+-+ ..+++..+..|+.|++.+..|.++..++...+...+...+-+..|-...|+.+...|.+.--...+.
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~------- 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY------- 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC-------
Confidence 54433 4678999999999999999999999888887655554445556663334555555566555444321
Q ss_pred cccccceecccC--CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeE-EEEC-CCCCEEEEEe
Q 012996 162 RASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDA-IALD-PAEHVFYAGS 237 (451)
Q Consensus 162 ~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~-~~~~-~~~~~l~~~~ 237 (451)
....+-. ..++|.+--..-. ..+..++-||.+.-+| ..|+.+..+...++|.. -+.+ |..+.+..+.
T Consensus 168 -----~~~~~w~~~~~~PiF~splcv~---~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~ 238 (354)
T KOG4649|consen 168 -----SSTEFWAATRFGPIFASPLCVG---SSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLEN 238 (354)
T ss_pred -----CcceehhhhcCCccccCceecc---ceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEec
Confidence 0011111 1122221100011 3444555666666666 45555555544444321 1111 3434444444
Q ss_pred CCCcE--------EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 238 RDGSI--------YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 238 ~dg~i--------~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
.+..+ .+|..+.+.....-. .+.-.+.-|...+. ...+|..++.||.+.|.-+. +.+.++..|
T Consensus 239 ~~Cf~~~~p~~ghL~w~~~~g~t~~vy~--~p~l~F~~h~~~~S-----~~~ll~~~s~dgkv~il~~~--~sl~~~~s~ 309 (354)
T KOG4649|consen 239 ENCFCAPLPIAGHLLWATQSGTTLHVYL--SPKLRFDLHSPGIS-----YPKLLRRSSGDGKVMILMTS--KSLAEISSN 309 (354)
T ss_pred CCeEEEeccccceEEEEecCCcEEEEEe--CcccceeccCCCCc-----chhhhhhhcCCCcEEEEEec--ccccccccC
Confidence 43332 234433321000000 00001111211111 13577788899998887433 224445555
Q ss_pred CCCeeEEE--------EE-e---cCceeeeccCCCCccccccCC
Q 012996 310 KGPVNNIL--------VV-R---RPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 310 ~~~v~~l~--------~s-~---~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.+.+..+. |+ | +| .|..|+.|.-++-||+.+
T Consensus 310 ~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 310 GGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred CCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEeccc
Confidence 44433333 22 2 34 577888999999998765
No 314
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2e-07 Score=80.20 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=142.0
Q ss_pred eeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCc
Q 012996 75 VKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 152 (451)
+...+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.-| .+++..|..+|.|.|||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 3344677899999999777 7888899999999999999999998888 88999999875 4667788889999999998
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEE------EeecCCeeEEEEeeCCCcEEEEEcCC----Cceeeeeeccccee
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIV------IGYGGVSATIVSASEDRTCKVWSLLK----GRLLRNIVFPSVID 222 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~------~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~i~ 222 (451)
........... .....+|..++ ..+.+ .+++....+ +..|++.- ..++..+..++...
T Consensus 267 ~~~~~~~e~~a--------~~t~~pv~~i~~~~~n~~f~~g--glLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~ci 334 (463)
T KOG1645|consen 267 QPEGPLMELVA--------NVTINPVHKIAPVQPNKIFTSG--GLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICI 334 (463)
T ss_pred CCCchHhhhhh--------hhccCcceeecccCcccccccc--ceEEeeehh--hhhhhhhccccCCCcccccCCCccee
Confidence 74322111100 00112222222 22222 344444433 45665532 22333444567777
Q ss_pred EEEECCCCCEEEEEeCCC----cEEE----EEccCCCCCCCCCCceeeeeeccC-Ccce-----eEEEEe-c-CCEEE-E
Q 012996 223 AIALDPAEHVFYAGSRDG----SIYI----AALNAESPSTSSYGMHIIGSLSDH-SKAV-----TCLAYS-T-GDLLI-S 285 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg----~i~i----~d~~~~~~~~~~~~~~~~~~~~~~-~~~v-----~~~~~~-~-~~~l~-s 285 (451)
++.+++..+.++...... .++. -|...+. .....-.++ ...- +...+. + .++++ +
T Consensus 335 smqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--------pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 335 SMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--------PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred eeeecCccceEEEEecCCCCCccceeeeeeeccccCc--------eeeeecccccCCcccccccccceeccccccEEEEe
Confidence 788877555555443321 1111 0111111 111111111 0000 111122 2 33433 4
Q ss_pred EcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cC-ceeeeccCCCCccccccC
Q 012996 286 GSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RP-LYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~-~~l~~~s~d~~i~iw~~~ 340 (451)
|+.-+.+.+||+.+++.++++.. +.+|.+++... ++ .||++- .|..+.|++.+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred cCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 45567799999999999999876 47888888765 33 355444 45666666543
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=4.4e-08 Score=91.44 Aligned_cols=184 Identities=18% Similarity=0.253 Sum_probs=134.9
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
...+.|++++ +++|+-|+.+|.|++++... . + .....|+.. ... |.++++|+.||+|
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-----------~-~-~~~~~~s~~------~~~--Gey~asCS~DGkv 95 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-----------N-P-KTNFDHSSS------ILE--GEYVASCSDDGKV 95 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-----------c-c-ccccccccc------ccC--CceEEEecCCCcE
Confidence 3456777777 78999999999999999732 1 1 223334433 233 4899999999999
Q ss_pred EEEEcCCCceeeeeecccceeEEEECCC-----CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE
Q 012996 202 KVWSLLKGRLLRNIVFPSVIDAIALDPA-----EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA 276 (451)
Q Consensus 202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 276 (451)
.|..+-+.+....+....++.+++++|+ .+.+++|+.-| +.++.-+-... .....+....++|.++.
T Consensus 96 ~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k~~v~l~~~eG~I~~i~ 167 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------KDSVVLSEGEGPIHSIK 167 (846)
T ss_pred EEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------ccceeeecCccceEEEE
Confidence 9999999999999999999999999997 57899999988 77765433211 11114556678999999
Q ss_pred EecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC------eeEEEEEecCceeeeccCCCCccccccC
Q 012996 277 YSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP------VNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 277 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|. |+++|-++.+| |+|||+.+++.+..++..... -..+.|.++.+.++ | +.-+|+|..++
T Consensus 168 W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 168 WR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred ec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 98 89999998888 899999999988887754433 34577777654443 3 33445555554
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.1e-07 Score=90.11 Aligned_cols=179 Identities=11% Similarity=0.104 Sum_probs=127.4
Q ss_pred cCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 128 (451)
+..++.||.. ..+..+|+.+.+...... ....|+-++. +++++.+|...|+|.+-|.++.+.+.++.+|.+.|.++
T Consensus 147 ~~~~i~Gg~Q-~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQ-EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchh-hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4445555555 567777877766544332 2334666555 58999999999999999999999999999999999887
Q ss_pred EEccCCcEEEEeeC---------CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996 129 VFSEDGSFLISGSE---------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (451)
Q Consensus 129 ~~~~~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~ 199 (451)
... |+.|+++|. |..|+|||++.... +..+.-+.++ .-+.|.|.-. ..+++++..|
T Consensus 224 Dv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----------l~PI~~~~~P-~flrf~Psl~-t~~~V~S~sG 288 (1118)
T KOG1275|consen 224 DVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----------LSPIQFPYGP-QFLRFHPSLT-TRLAVTSQSG 288 (1118)
T ss_pred ecc--CCeEEEeecccccccccccchhhhhhhhhhhc-----------cCCcccccCc-hhhhhccccc-ceEEEEeccc
Confidence 765 889999876 45589999976322 1112222222 2345666543 6788888999
Q ss_pred cEEEEEc---CCCc-eeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996 200 TCKVWSL---LKGR-LLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (451)
Q Consensus 200 ~i~iwd~---~~~~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (451)
...+-|. .+.. .+..+. ..+.+..++++++++.++.|..+|.|.+|.
T Consensus 289 q~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 289 QFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 9999993 3321 122222 345599999999999999999999999998
No 317
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.82 E-value=1.2e-08 Score=59.44 Aligned_cols=39 Identities=36% Similarity=0.888 Sum_probs=36.6
Q ss_pred CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
++++.++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357789999999999999999999999999999999997
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.79 E-value=6.2e-06 Score=70.49 Aligned_cols=229 Identities=15% Similarity=0.135 Sum_probs=142.8
Q ss_pred EEeecCCCCCC-eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC----CccEEEEECCCCceeee--
Q 012996 4 LIASSSVADTG-IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS----SGSILYWSWSKPQVEVK-- 76 (451)
Q Consensus 4 ~l~s~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----~g~i~vw~~~~~~~~~~-- 76 (451)
.+|.+. ..|+ ..+||..+|+....+....+ .-..=-.-|+++|++|.++-.| .|.|-|||....-....
T Consensus 19 avafaR-RPG~~~~v~D~~~g~~~~~~~a~~g---RHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~ 94 (305)
T PF07433_consen 19 AVAFAR-RPGTFALVFDCRTGQLLQRLWAPPG---RHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF 94 (305)
T ss_pred EEEEEe-CCCcEEEEEEcCCCceeeEEcCCCC---CEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe
Confidence 455666 5554 78999999999887754322 1111112299999999987443 38999999984333322
Q ss_pred ecCCCCeeEEEECCCCcEEEEec------------------cCCCEEEEEcCCCcceee--e--ccccCCeeEEEEccCC
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGG------------------QSGDIYMWEVASGRLLKK--W--HAHYRAVTCLVFSEDG 134 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~ 134 (451)
..+.-....+.+.|||..|+++. .+-++...|..+|+++.. + .-|.-.|..+++.++|
T Consensus 95 ~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G 174 (305)
T PF07433_consen 95 PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG 174 (305)
T ss_pred cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC
Confidence 22344567788999998887762 123466677788888766 4 3377889999999998
Q ss_pred cEEEEeeCCCc-------EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 135 SFLISGSEDGC-------VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 135 ~~l~s~~~dg~-------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
..++..-..|. |-+++....... -.........-...+-+|+++.++. ...+|+-..+.+.+||..
T Consensus 175 ~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~------~~~p~~~~~~l~~Y~gSIa~~~~g~-~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 175 TVAFAMQYQGDPGDAPPLVALHRRGGALRL------LPAPEEQWRRLNGYIGSIAADRDGR-LIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred cEEEEEecCCCCCccCCeEEEEcCCCccee------ccCChHHHHhhCCceEEEEEeCCCC-EEEEECCCCCEEEEEECC
Confidence 76665544332 334433210000 0000011223456788999998873 344666678899999999
Q ss_pred CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (451)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (451)
+++.+....... +..++..+++ |++.+..|.+...+
T Consensus 248 tg~~~~~~~l~D-~cGva~~~~~--f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 248 TGRLLGSVPLPD-ACGVAPTDDG--FLVSSGQGQLIRLS 283 (305)
T ss_pred CCCEeeccccCc-eeeeeecCCc--eEEeCCCccEEEcc
Confidence 999888776433 4455555555 44444455544433
No 319
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=6.7e-09 Score=60.49 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=37.0
Q ss_pred CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
++++.++.+|.++|++|+|+|++.+|++++.|+.+++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 468899999999999999999999999999999999996
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.73 E-value=9.4e-06 Score=73.85 Aligned_cols=257 Identities=13% Similarity=0.124 Sum_probs=139.7
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-cc-------c---------cC
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HA-------H---------YR 123 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~-------~---------~~ 123 (451)
+.+.+||+.++...........+....|||+|+.+|... ++.|++++..++...+.- .+ - -+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 789999999987665544467899999999999998865 578999998776433221 11 0 12
Q ss_pred CeeEEEEccCCcEEEEeeCC-CcEEEeeCcchhhhhh-------------hh-------------ccccccee---cccC
Q 012996 124 AVTCLVFSEDGSFLISGSED-GCVRIWSLLTVFEECE-------------SQ-------------RASHLYLH---SFTG 173 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~d-g~i~vwd~~~~~~~~~-------------~~-------------~~~~~~~~---~~~~ 173 (451)
.-..+-||||+++|+....| ..|..+.+........ .. ......+. .+..
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence 23578899999998876543 3344443321111000 00 00000001 1122
Q ss_pred CcCceeEEEEeecCCeeEEE--EeeCCC---cEEEEEcCCCceeeeee--cccc---eeEEEEC-C-CCCEEEEEeCCCc
Q 012996 174 HTLRITDIVIGYGGVSATIV--SASEDR---TCKVWSLLKGRLLRNIV--FPSV---IDAIALD-P-AEHVFYAGSRDGS 241 (451)
Q Consensus 174 ~~~~i~~i~~~~~~~~~~l~--s~~~d~---~i~iwd~~~~~~~~~~~--~~~~---i~~~~~~-~-~~~~l~~~~~dg~ 241 (451)
....+..+.|.+++ ..++ ..+.+. .+.++|..++....... .+.. .....+. + .+.++.....+|.
T Consensus 182 ~~~yl~~v~W~~d~--~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 182 QDYYLTRVGWSPDG--KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp SSEEEEEEEEEETT--EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CccCcccceecCCC--cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 34456778888887 4233 333333 46677887765433332 2222 2244554 5 4455666667775
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CC-EEEEEcCCC----cEEEEeCCCCceEEEeecCCCCee
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GD-LLISGSEDG----MVRVWDPITHNIVRMFRLAKGPVN 314 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~-~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~ 314 (451)
-++|-+.... .....+....-.|.. +.+++ ++ +.+++..++ .|..-++..+..+..+....+.-.
T Consensus 260 ~hly~~~~~~--------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 260 RHLYLYDLDG--------GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHY 331 (353)
T ss_dssp EEEEEEETTS--------SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred cEEEEEcccc--------cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence 5544443332 223345555566755 66777 44 445565433 455556663455566665444346
Q ss_pred EEEEEecCceeeec
Q 012996 315 NILVVRRPLYLNLG 328 (451)
Q Consensus 315 ~l~~s~~~~~l~~~ 328 (451)
.+.|||++++++..
T Consensus 332 ~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 332 SASFSPDGKYYVDT 345 (353)
T ss_dssp EEEE-TTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 99999999988654
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.73 E-value=2.7e-06 Score=83.56 Aligned_cols=233 Identities=12% Similarity=0.102 Sum_probs=145.8
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc----CCC
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG 112 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~ 112 (451)
..|.++. |..+...++.+... |.|.+-|..+........-...|.+++||||+..++..+..+++.+-.- -..
T Consensus 69 ~~i~s~~--fl~d~~~i~v~~~~-G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQ--FLADTNSICVITAL-GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred cceEEEE--EecccceEEEEecC-CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 4566666 88888888888887 8899989888888777777899999999999999998888777765432 000
Q ss_pred -------------------cceeeeccc---------------------cCCeeEEEEccCCcEEEEe-----eCCCcEE
Q 012996 113 -------------------RLLKKWHAH---------------------YRAVTCLVFSEDGSFLISG-----SEDGCVR 147 (451)
Q Consensus 113 -------------------~~~~~~~~~---------------------~~~v~~~~~~~~~~~l~s~-----~~dg~i~ 147 (451)
+....|.+. .+.=+.|.|--||.++++. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 111112211 0112358999999999873 2237899
Q ss_pred EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCceeee----eeccc-
Q 012996 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRN----IVFPS- 219 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~----~~~~~- 219 (451)
|||-+. ..-..-....+.-.++.|-|.| ..+++-. .|+.|.+|.- +|-.... +..+.
T Consensus 226 V~drEg------------~Lns~se~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 226 VYDREG------------ALNSTSEPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred Eecccc------------hhhcccCcccccccceeecCCC--CeEeeeeecCCCCcEEEEec-CCccccccccCCccccc
Confidence 999741 1111111122233467888876 6777643 4567888884 3433332 33333
Q ss_pred ceeEEEECCCCCEEEE---EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEE
Q 012996 220 VIDAIALDPAEHVFYA---GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRV 294 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~i 294 (451)
.+..++|+.++..|++ ......|++|-+.+-. |-....+.-..... +.|+| ...|..-..+|...+
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-------WYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v 361 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-------WYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLV 361 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeE-------EEEEEEEecccccc--ccccCCCceeEEEEecCCcEEE
Confidence 3899999999999998 4445569999887642 22222222222222 66777 334444445555554
Q ss_pred Ee
Q 012996 295 WD 296 (451)
Q Consensus 295 wd 296 (451)
+|
T Consensus 362 ~~ 363 (1265)
T KOG1920|consen 362 RD 363 (1265)
T ss_pred EE
Confidence 44
No 322
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.72 E-value=2.1e-05 Score=73.76 Aligned_cols=209 Identities=11% Similarity=0.037 Sum_probs=126.4
Q ss_pred CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC----cEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (451)
+.+.+.|..+.+...++... +....+.++++|+++++.+.+. ++...+..+ ...+..+....
T Consensus 215 ~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-----------~d~~vvfni~~-- 280 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-----------RDWVVVFNIAR-- 280 (635)
T ss_pred EEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc-----------CceEEEEchHH--
Confidence 45667777766665555432 2446788999999988876432 233332211 00111111000
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-----CceeeeeecccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCC
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLK-----GRLLRNIVFPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAES 251 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 251 (451)
+. ++.+++ ++... .++.|.+.|.++ ...+..+..+.....+.++|+|+++++++. ++.+.++|+....
T Consensus 281 ie--a~vkdG--K~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 281 IE--EAVKAG--KFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred HH--HhhhCC--CEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 00 222344 44443 367899999998 467777778889999999999999887654 8899999998754
Q ss_pred CCCC---CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----------CceEEEeecCCCCeeEEE
Q 012996 252 PSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFRLAKGPVNNIL 317 (451)
Q Consensus 252 ~~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~l~ 317 (451)
.... ........+..- .......+|.+ |....|-.-|..|..||+.. ...+..+..|-.+-...+
T Consensus 355 ~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~ 433 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHA 433 (635)
T ss_pred hhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeee
Confidence 2110 000111222222 23344567888 88888888999999999876 345555655544322222
Q ss_pred -----EEecCceeeeccCC
Q 012996 318 -----VVRRPLYLNLGSFS 331 (451)
Q Consensus 318 -----~s~~~~~l~~~s~d 331 (451)
-.|||++|++...-
T Consensus 434 ~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 434 SMGETKEADGKWLVSLNKF 452 (635)
T ss_pred cCCCcCCCCCCEEEEcccc
Confidence 36899999987543
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.71 E-value=2.2e-08 Score=91.12 Aligned_cols=263 Identities=16% Similarity=0.216 Sum_probs=154.9
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECC-CCcEEEEec----cCCCEEEEE
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANS-HGTYIAGGG----QSGDIYMWE 108 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd 108 (451)
..+.|++..+..+...+++|..+ |.|.+-.+.... ......+..++++++|++ |.+.||+|- .|..+.|||
T Consensus 57 qy~kcva~~y~~d~cIlavG~at-G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSAT-GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCceeehhhcCCchhhhhhcccc-CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34556663344454566677776 999999876443 234455678999999998 667788873 356799999
Q ss_pred cCCC--ccee--eecc-ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 109 VASG--RLLK--KWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 109 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
+.++ .+.. .+.+ ......+++|..+.+++++|.....+.++|++... .....-.+..+.++.+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~------------~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL------------DSVSSVNTKYVQGITV 203 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh------------hhhhhhhhhhccccee
Confidence 9877 2211 1222 33456688999888999999999999999996411 1111123345566777
Q ss_pred ee-cCCeeEEEEeeCCCcEEEEE-cCCC-ceeeeee-----cccceeEEEECCCC-CEEEEE-eCCCcEEEEEccCCCCC
Q 012996 184 GY-GGVSATIVSASEDRTCKVWS-LLKG-RLLRNIV-----FPSVIDAIALDPAE-HVFYAG-SRDGSIYIAALNAESPS 253 (451)
Q Consensus 184 ~~-~~~~~~l~s~~~d~~i~iwd-~~~~-~~~~~~~-----~~~~i~~~~~~~~~-~~l~~~-~~dg~i~i~d~~~~~~~ 253 (451)
.| .+ +++++.. ||.|.+|| .++- .++..+. .+..+..++|.|.. ..+++. -..++|++||+......
T Consensus 204 dp~~~--nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~ 280 (783)
T KOG1008|consen 204 DPFSP--NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTE 280 (783)
T ss_pred cCCCC--Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCc
Confidence 77 44 5666655 99999999 4332 2222222 23458999999943 334444 45678999998653221
Q ss_pred CCCCCceee--e---eeccC--CcceeEEEEec-C--CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 254 TSSYGMHII--G---SLSDH--SKAVTCLAYST-G--DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 254 ~~~~~~~~~--~---~~~~~--~~~v~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
........+ . .++.. -..|.+..|++ . ...+++-..-++.-+++.. ..+..|..|.+.+-|+
T Consensus 281 ~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e----~~~pa~s~p~n~L~~s 352 (783)
T KOG1008|consen 281 GSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE----EVIPASSNPYNDLIFS 352 (783)
T ss_pred ccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh----heecccCCCcccchhh
Confidence 111110111 0 12211 25677777776 2 3344444444444444322 1223333455665555
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.67 E-value=3.7e-05 Score=62.82 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=79.0
Q ss_pred eccCc-ccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCee
Q 012996 48 ASSQL-REQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT 126 (451)
Q Consensus 48 ~~~~~-l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 126 (451)
++.+. ++.++.. +.+.--|..++..........++.+-+.- -|++++.|+..|.+++.+.++|+....+..-..-=.
T Consensus 20 ~dskT~v~igSHs-~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~ 97 (354)
T KOG4649|consen 20 NDSKTLVVIGSHS-GIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKV 97 (354)
T ss_pred cCCceEEEEecCC-ceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence 33444 4444444 88988999999988887777777665554 578899999999999999999988877754332222
Q ss_pred EEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 127 CLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.....+++..+..|+.|++....|.++
T Consensus 98 ~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 98 RAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ceEEcCCCceEEEecCCCcEEEecccc
Confidence 344567899999999999999999955
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=7.1e-06 Score=80.74 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=131.4
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc----chhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL----TVFE 156 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~----~~~~ 156 (451)
+.|.++.|..+++-++.+...|.|.+-|..+.... ....-...|.+++|+||+..++..+..+++.+.+-. ....
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 58999999999999999999999999987765432 223346789999999999999988888887765431 0000
Q ss_pred hhhhhcccccc--------eecccC------------C---------cCceeEEEEeecCCeeEEEEe-----eCCCcEE
Q 012996 157 ECESQRASHLY--------LHSFTG------------H---------TLRITDIVIGYGGVSATIVSA-----SEDRTCK 202 (451)
Q Consensus 157 ~~~~~~~~~~~--------~~~~~~------------~---------~~~i~~i~~~~~~~~~~l~s~-----~~d~~i~ 202 (451)
........... ...+.+ + ...=+++.|-.+| .++++. ...+.|+
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg--~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG--EYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC--cEEEEEEEeccCCceeEE
Confidence 00000000000 000110 0 0111235665555 788873 2337899
Q ss_pred EEEcCCCceeeee-ecccceeEEEECCCCCEEEEE---eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996 203 VWSLLKGRLLRNI-VFPSVIDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 203 iwd~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
+||-. |..-..- ...+.-.+++|-|.|..+++- ++|+.|.+|.-+..... .....+......+..++|+
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeec
Confidence 99976 4332221 134456789999999998875 35567999887654311 1111222233458999999
Q ss_pred c-CCEEEE---EcCCCcEEEEeCCCC
Q 012996 279 T-GDLLIS---GSEDGMVRVWDPITH 300 (451)
Q Consensus 279 ~-~~~l~s---~~~dg~i~iwd~~~~ 300 (451)
. +..|++ ......|++|-+.+.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCCCceeeeecccccceEEEEEecCe
Confidence 9 888887 455556999987764
No 326
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=3.4e-06 Score=79.26 Aligned_cols=175 Identities=14% Similarity=0.156 Sum_probs=123.9
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 128 (451)
.++.++.|..+ |.|++++..... .....|... .-+|.++++|+.||.|.|-.+.+.+...++. ...++.++
T Consensus 48 ~~~~~~~GtH~-g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksi 118 (846)
T KOG2066|consen 48 HDKFFALGTHR-GAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSI 118 (846)
T ss_pred hcceeeecccc-ceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeE
Confidence 46778888887 999999977554 222223222 5679999999999999999998888777664 45789999
Q ss_pred EEccC-----CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 129 VFSED-----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 129 ~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
+++|+ .+.+++||.-| +.++.-.= -.......+..-.++|.++.|.. ++++-++.+| |++
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~w---------lgnk~~v~l~~~eG~I~~i~W~g----~lIAWand~G-v~v 183 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNW---------LGNKDSVVLSEGEGPIHSIKWRG----NLIAWANDDG-VKV 183 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhh---------hcCccceeeecCccceEEEEecC----cEEEEecCCC-cEE
Confidence 99997 56799999988 77765321 11111113455678999998843 6888887777 999
Q ss_pred EEcCCCceeeeeeccc-------ceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 204 WSLLKGRLLRNIVFPS-------VIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 204 wd~~~~~~~~~~~~~~-------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
||..+++.+..+..+. -...+.|.++.+ |+. |...+|.+..++.
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIKK 234 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEec
Confidence 9999998888776332 234566765544 444 4455788888873
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=4.2e-08 Score=92.53 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=137.7
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+...++..|....+|++|+.+.++|+.|+..|.|++|++.+ .........|..+|+.+.-+.++. ..|
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-----------G~~e~s~ncH~SavT~vePs~dgs-~~L 1159 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-----------GSMEESVNCHQSAVTLVEPSVDGS-TQL 1159 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-----------ccccccccccccccccccccCCcc-eee
Confidence 34556778889999999999999999999999999999955 445566788999999998887773 333
Q ss_pred EEeeCCC-cEEEEEcCC-CceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 193 VSASEDR-TCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 193 ~s~~~d~-~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
.+++... -..+|++.+ +.+.+++. .-.++.|+..-..-+.|+......+||+.+..+...- +....+...
T Consensus 1160 tsss~S~PlsaLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty-----lt~~~~~~y 1231 (1516)
T KOG1832|consen 1160 TSSSSSSPLSALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY-----LTDTVTSSY 1231 (1516)
T ss_pred eeccccCchHHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh-----cCcchhhhh
Confidence 3333333 577999864 33444443 3456778776666667777778999999987532210 111112223
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.-++..|+| ..+++ .||. +||++..+.++.|...... -.-.|+|.|..++.-+. |||+++-.+
T Consensus 1232 ~~n~a~FsP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hccccccCCCcceEe---eCce--eeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHH
Confidence 337788999 55554 4664 6999988888877654322 23368999988887653 677665444
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.54 E-value=3.2e-08 Score=90.05 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=132.3
Q ss_pred CCCeeEEEECCC--CcEEEEeccCCCEEEEEcCCCcc--eeeeccccCCeeEEEEcc-CCcEEEEeeC----CCcEEEee
Q 012996 80 AEPIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRL--LKKWHAHYRAVTCLVFSE-DGSFLISGSE----DGCVRIWS 150 (451)
Q Consensus 80 ~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~s~~~----dg~i~vwd 150 (451)
...+.|+++.-+ ...+++|..+|.|.+-.++...- .....+|...+++++|++ |.+.|+.|-. |..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 346777776543 35789999999999988765432 234467889999999998 6677776632 56799999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC-C
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-A 229 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~ 229 (451)
+.+..... .....+ . .+......+++|..+. +++.+|.....+.++|++.............+..+.++| .
T Consensus 136 i~s~ltvP---ke~~~f-s--~~~l~gqns~cwlrd~--klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 136 INSLLTVP---KESPLF-S--SSTLDGQNSVCWLRDT--KLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFS 207 (783)
T ss_pred cccccCCC---cccccc-c--cccccCccccccccCc--chhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCC
Confidence 97643210 001111 1 1133344577887665 788999999999999998432222112234577788899 7
Q ss_pred CCEEEEEeCCCcEEEEEc-cCCCCCCCCCCceeeeeeccCC----cceeEEEEec--CCEEEEEcC-CCcEEEEeCC
Q 012996 230 EHVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGSLSDHS----KAVTCLAYST--GDLLISGSE-DGMVRVWDPI 298 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~--~~~l~s~~~-dg~i~iwd~~ 298 (451)
++++++-. ||.|.+||. +.-+ .++..+.... ..+..++|+| ...+++... .++|+.+|+.
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCceeccc-cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 77776655 999999994 3322 2222222222 2489999999 566666665 4679999874
No 329
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.54 E-value=0.00035 Score=64.63 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=104.4
Q ss_pred CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
.|.||+ .+|+++..+.-..+.|.++.|+.+. .|++...||.+++||+.... ... -...+....-....+....
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~-~fs----l~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEF-QFS----LGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCce-eec----hhhhccccCcccccccccc
Confidence 488998 4677777664444899999999865 46677789999999984311 000 0000111111111122222
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-ccccee---------E-EEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVID---------A-IALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~---------~-~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+..+| -.++ ..++.+.+..--... ..+.+. .+.... . ..++.+....+....++.+++.+-...
T Consensus 135 ~~~~G--ivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYKNG--IVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCCCC--EEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 22232 2222 234444433221111 111111 111100 0 223444444444455555554443221
Q ss_pred CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecC
Q 012996 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRP 322 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~ 322 (451)
. .+ ...+++..|+.|| ++++|.-..+|.+.+.+..-.+.+.++... ..+...+.|.-+.
T Consensus 211 ~------------~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 211 K------------QI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred c------------cc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 1 11 1246899999999 999999999999999987767777666654 3455677776544
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.53 E-value=7.3e-06 Score=76.73 Aligned_cols=189 Identities=7% Similarity=0.037 Sum_probs=117.8
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-------------------------
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ------------------------- 100 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------------- 100 (451)
++|+|+.+...+...+.+.+.|.++.+......-......++++|+|+++++.+.
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 5567877655555558889999888777665554556678888999888877652
Q ss_pred ---------------CCCEEEEEcCC----C-cceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhh
Q 012996 101 ---------------SGDIYMWEVAS----G-RLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECE 159 (451)
Q Consensus 101 ---------------dg~i~iwd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~ 159 (451)
++.|.+.|..+ + ..+..+. -......+.++|||+++++++. +.++.|.|+.+......
T Consensus 280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 23477777766 2 3333333 3455678999999999876654 88999999977443211
Q ss_pred hhc-ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC----------CceeeeeecccceeEEE---
Q 012996 160 SQR-ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVIDAIA--- 225 (451)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~i~~~~--- 225 (451)
... ..........--.++ ...+|..++ +...|...|..|..||+.+ ...+..+.-...+-.+.
T Consensus 359 ~~~~~~~~vvaevevGlGP-LHTaFDg~G--~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~ 435 (635)
T PRK02888 359 GKIKPRDAVVAEPELGLGP-LHTAFDGRG--NAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASM 435 (635)
T ss_pred ccCCccceEEEeeccCCCc-ceEEECCCC--CEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecC
Confidence 110 111112222222222 345665555 7888888999999999876 23444443222222222
Q ss_pred ---ECCCCCEEEEEeC
Q 012996 226 ---LDPAEHVFYAGSR 238 (451)
Q Consensus 226 ---~~~~~~~l~~~~~ 238 (451)
-.|+|++|++...
T Consensus 436 g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 436 GETKEADGKWLVSLNK 451 (635)
T ss_pred CCcCCCCCCEEEEccc
Confidence 3678888888653
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.1e-05 Score=72.09 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=81.0
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----e---
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----V--- 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~--- 75 (451)
.+++.|+ .-|.+.+|+-..+... .++... ....+.... .+++..++|.|+.. |.|.|+-++..... .
T Consensus 46 ~~l~~Gs-S~G~lyl~~R~~~~~~-~~~~~~-~~~~~~~~~--vs~~e~lvAagt~~-g~V~v~ql~~~~p~~~~~~t~~ 119 (726)
T KOG3621|consen 46 EYLAMGS-SAGSVYLYNRHTGEMR-KLKNEG-ATGITCVRS--VSSVEYLVAAGTAS-GRVSVFQLNKELPRDLDYVTPC 119 (726)
T ss_pred ceEEEec-ccceEEEEecCchhhh-cccccC-ccceEEEEE--ecchhHhhhhhcCC-ceEEeehhhccCCCcceeeccc
Confidence 5788888 8999999997665543 333322 222233333 56666666666665 99999988764322 1
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEc
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFS 131 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~ 131 (451)
...|...|+|++|++++..+.+|...|.|..-.+.+.. ....+-.-.+.|.-+...
T Consensus 120 d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 120 DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 12257899999999999999999999999998887621 111222234566666655
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=2.1e-05 Score=74.67 Aligned_cols=199 Identities=12% Similarity=0.130 Sum_probs=127.0
Q ss_pred ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC-eeEEEECCCCcEEEEeccCCC-----EEEEEcCC
Q 012996 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP-IKPIAANSHGTYIAGGGQSGD-----IYMWEVAS 111 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~ 111 (451)
.+.| +++.+..++.|+.+ |.|.+++-.-........+... |..+-...+.++|++.+.|+. ++||+++.
T Consensus 27 ~isc----~~s~~~~vvigt~~-G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC----CSSSTGSVVIGTAD-GRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE----EcCCCceEEEeecc-ccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 5555 77889999999888 8888887443321222223333 555554545578887766644 89999853
Q ss_pred C------ccee--eecc-----ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 112 G------RLLK--KWHA-----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 112 ~------~~~~--~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
- .++. .+.. ...++.+++.+.+-+.+++|-.+|.|..+.-.-.. .......-...-..+|
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-------Drgsr~~~~~~~~~pI 174 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-------DRGSRQDYSHRGKEPI 174 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-------ccccceeeeccCCCCc
Confidence 3 2231 1111 34678899999999999999999999998542211 1111222233456799
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
+++++..++... ++++ ....|.+|.+....+... +. +.....|..+++....|++++. ..+++|+.....
T Consensus 175 TgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 175 TGLALRSDGKSV-LFVA-TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRG 246 (933)
T ss_pred eeeEEecCCcee-EEEE-ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcc
Confidence 999999888422 3333 345699999874442222 33 6677888888886665655543 468999988653
No 333
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.51 E-value=0.00021 Score=62.12 Aligned_cols=269 Identities=13% Similarity=0.090 Sum_probs=156.2
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeee--ecCC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVK--SLPA 80 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~--~~~~ 80 (451)
.+.+.|.|..+++.+..+.....+ -+. .+|+++.+.++.. -...|.+||..+...... ....
T Consensus 16 ~~rv~viD~d~~k~lGmi~~g~~~-----~~~--~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k 88 (342)
T PF06433_consen 16 TSRVYVIDADSGKLLGMIDTGFLG-----NVA--LSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPK 88 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEEESSE-----EEE--E-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS
T ss_pred cceEEEEECCCCcEEEEeecccCC-----cee--ECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCc
Confidence 357999999999988777653321 222 6788887776431 115799999998765432 2211
Q ss_pred ------CCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 81 ------EPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 81 ------~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
.....++++.|++++++... ...|.|.|+..++.+..+... .+..+.=+++ +-|.+-+.||.+.-..+.
T Consensus 89 ~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld 165 (342)
T PF06433_consen 89 PRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLD 165 (342)
T ss_dssp -B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEET
T ss_pred chheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEEC
Confidence 23345678889988877533 356889999888888776532 1222222222 457788889999998886
Q ss_pred chhhhhhhhcccccceecccCCcCcee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eee-----------cc
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-----------FP 218 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~-----------~~ 218 (451)
...... ......|..-..++. .-++...+ ..++-.+.+|.|+--|+....... .+. -+
T Consensus 166 ~~Gk~~------~~~t~~F~~~~dp~f~~~~~~~~~--~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 166 ADGKEA------QKSTKVFDPDDDPLFEHPAYSRDG--GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp STSSEE------EEEEEESSTTTS-B-S--EEETTT--TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred CCCCEe------EeeccccCCCCcccccccceECCC--CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 422111 000111222222221 22233333 345557788999998887654321 221 13
Q ss_pred cceeEEEECCCCCEEEEEeC--------CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEE
Q 012996 219 SVIDAIALDPAEHVFYAGSR--------DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG 286 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~--------dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~ 286 (451)
+.-.-+++++..+.|++-.. ++ .|.++|+.+. +.+..+.. ..++.+|..+. ..+|++.
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~ 307 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---------KRVARIPL-EHPIDSIAVSQDDKPLLYAL 307 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---------EEEEEEEE-EEEESEEEEESSSS-EEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---------eEEEEEeC-CCccceEEEccCCCcEEEEE
Confidence 44556788876666665322 12 4777777776 44555542 35688999998 4466554
Q ss_pred -cCCCcEEEEeCCCCceEEEeec
Q 012996 287 -SEDGMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 287 -~~dg~i~iwd~~~~~~~~~~~~ 308 (451)
..++.+.+||..+|+.++++..
T Consensus 308 ~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp ETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCeEEEEeCcCCcEEeehhc
Confidence 5689999999999999999875
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.49 E-value=0.00027 Score=61.43 Aligned_cols=269 Identities=15% Similarity=0.129 Sum_probs=153.8
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCcceeeeccc---c----C
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH---Y----R 123 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~---~----~ 123 (451)
+.+.|+|.++++..-.. ..+-.-.+..+|+++.+.+++ ..-.|.+||..+......+.-. . .
T Consensus 17 ~rv~viD~d~~k~lGmi-~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI-DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEE-EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEe-ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 57999999888764332 223444577899999887642 2235999999988766644211 1 1
Q ss_pred CeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 124 AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
....++++.|+++++.... -..|.|.|+.. ...+..+... . |...-|.+. .-+.+-|.||.+
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~-----------~kvv~ei~~P--G--C~~iyP~~~-~~F~~lC~DGsl 159 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAA-----------KKVVGEIDTP--G--CWLIYPSGN-RGFSMLCGDGSL 159 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTT-----------TEEEEEEEGT--S--EEEEEEEET-TEEEEEETTSCE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCC-----------CceeeeecCC--C--EEEEEecCC-CceEEEecCCce
Confidence 2234577778887766433 34677778743 3333332211 1 222224333 457888999999
Q ss_pred EEEEcC-CCceeeeee---c--cc-ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc----CCc
Q 012996 202 KVWSLL-KGRLLRNIV---F--PS-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD----HSK 270 (451)
Q Consensus 202 ~iwd~~-~~~~~~~~~---~--~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~ 270 (451)
.-..+. .|+...... + .. ....-++...+..++-.+.+|.|+-.|+......... .+.....-.. -.+
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-PWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-EEESS-HHHHHTTEEE-
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-cccccCccccccCcCCc
Confidence 999887 455543221 1 11 1223334444555555788999999998876421100 0000000000 012
Q ss_pred ceeEEEEec-CCEEEEEc---CCC-------cEEEEeCCCCceEEEeecCCCCeeEEEEEecCc-eeee-ccCCCCcccc
Q 012996 271 AVTCLAYST-GDLLISGS---EDG-------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL-YLNL-GSFSNPHTSS 337 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~---~dg-------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~-~s~d~~i~iw 337 (451)
.-.-+++++ .+.|.+.- .+| .|.++|+.+++.+.++.. ..++.+|..+.+.+ +|.+ ...++.+.+|
T Consensus 239 G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 239 GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 233467776 44444432 122 388889999999999986 35788999998765 5544 4568999999
Q ss_pred ccCCCCCCCcc
Q 012996 338 RRHGSQLPPPL 348 (451)
Q Consensus 338 ~~~~~~~~~~~ 348 (451)
|..++++....
T Consensus 318 D~~tGk~~~~~ 328 (342)
T PF06433_consen 318 DAATGKLVRSI 328 (342)
T ss_dssp ETTT--EEEEE
T ss_pred eCcCCcEEeeh
Confidence 98876554433
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.46 E-value=7.1e-05 Score=69.15 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=117.7
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe-eCcchhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEEC 158 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~ 158 (451)
.-.+..+.++|+|+++++ +.+|...||.....+.. ..+.-....|.+.++ +++-...+.|.++ ++..
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~----- 99 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKN----- 99 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-----
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEecCcc-EEEEECCCeEEEEEcCcc-----
Confidence 445789999999999998 56788888873332222 123446788998554 6666668889996 4421
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
.....+.. ...+..+-. | .+|...+.+ .|.+||..+++.+..+..+. |..+.|++++.+++..+.
T Consensus 100 -------~~~k~i~~-~~~~~~If~---G--~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 100 -------EVVKSIKL-PFSVEKIFG---G--NLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp --------TT------SS-EEEEE----S--SSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred -------ccceEEcC-CcccceEEc---C--cEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 11111111 112333322 4 566666544 89999999999999998654 899999999999999875
Q ss_pred CCcEEEEEccCCCCC-CCCCCce-eeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996 239 DGSIYIAALNAESPS-TSSYGMH-IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (451)
Q Consensus 239 dg~i~i~d~~~~~~~-~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (451)
+ .+++++.+..... ....+.. ....+......|.+..|.. +.|+-.+.. .|+. +..|+ ...+..-..++.=+
T Consensus 165 ~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~-d~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yll 238 (443)
T PF04053_consen 165 D-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE-DCFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLL 238 (443)
T ss_dssp --SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET-TEEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEE
T ss_pred C-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEc-CEEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEE
Confidence 5 5666665432000 0000000 1223322256788888874 344443333 6665 33332 23333335577777
Q ss_pred EEEecCceeeeccCCCCccccccC
Q 012996 317 LVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 317 ~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
...|..+.+.....|+.+..+.+.
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEccCCEEEEEECCCCEEEEEEC
Confidence 778777777777777777776654
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.46 E-value=6.2e-06 Score=75.31 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=69.5
Q ss_pred EEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE
Q 012996 63 ILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI 138 (451)
Q Consensus 63 i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 138 (451)
-.+|+...++.. ........|.|++++|+...|+.|+.||.|.+||...+... +....-.++.++|+|+|..++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 345665544433 22335789999999999999999999999999998766333 223445678999999999999
Q ss_pred EeeCCCcEEEeeCcc
Q 012996 139 SGSEDGCVRIWSLLT 153 (451)
Q Consensus 139 s~~~dg~i~vwd~~~ 153 (451)
+|+..|.+.+||+.-
T Consensus 316 V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 316 VGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCceEEEEEeec
Confidence 999999999999854
No 337
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.45 E-value=0.00011 Score=62.16 Aligned_cols=205 Identities=13% Similarity=0.138 Sum_probs=115.8
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-c-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-L-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
....+..++ |.|+...|++.....+.|..++.+ +++..+. . ..+..-.|++..++.++++--.++.+.++++...
T Consensus 20 ~~~e~SGLT--y~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 20 ILDELSGLT--YNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp --S-EEEEE--EETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred ccCCccccE--EcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 334577777 999877666666655999888875 4443332 2 2467889999988888887666889999988432
Q ss_pred c-c-----eeee-----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 113 R-L-----LKKW-----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 113 ~-~-----~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
. . ...+ ..+...+-.++|.+.++.|+.+-...-..+|.+..........................+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 1 1 1111 134567899999998777777777767777776431100000000000011122234457888
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc----------ceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------VIDAIALDPAEHVFYAGSRDGSIYIA 245 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (451)
.++|... .+++.+..+..|..+| .+|+.+..+.... ..-.|+|+++|++. +.+.-+..+.|
T Consensus 177 ~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred EEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 8887753 7888888899999999 6788877776432 57789999988544 44555555544
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.45 E-value=5.9e-05 Score=63.65 Aligned_cols=206 Identities=13% Similarity=0.194 Sum_probs=101.9
Q ss_pred CCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 80 AEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 80 ~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
...+..|+|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++++.-.++.+.++++......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 3469999999974 56677777888888886 57887776433 356789999888887777666889999988432111
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 237 (451)
..........+.....+...+-+++|.+.. +.|+.+-...-..+|.+....
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~--------------------------- 150 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFP--------------------------- 150 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT---------------------------
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEcccc---------------------------
Confidence 000000000000111233345555555544 233333322222222221100
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC-----
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK----- 310 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----- 310 (451)
....+.+.+... ..........+.+++++| +.+++.+..+..|..+| .+|+.+..+....
T Consensus 151 ~~~~~~~~~~~~------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 151 GGFDLFVSDDQD------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp -SS--EEEE-HH------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-
T ss_pred Cccceeeccccc------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc
Confidence 001111111100 001112345678999999 77888888899999999 7788887766433
Q ss_pred ----CCeeEEEEEecCceeeec
Q 012996 311 ----GPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 311 ----~~v~~l~~s~~~~~l~~~ 328 (451)
..--.|+|.++|...+++
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc
Confidence 246789999998655553
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.45 E-value=5.8e-05 Score=68.73 Aligned_cols=215 Identities=13% Similarity=0.106 Sum_probs=124.1
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh------hh--------------------h------cccccceecc
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC------ES--------------------Q------RASHLYLHSF 171 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~--------------------~------~~~~~~~~~~ 171 (451)
.|+.+.|.++..-|++|...|.|.+|......... .. . .....+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999988889999999999998775432211 00 0 0112223334
Q ss_pred cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---------ccceeEEEECC-----CC---CEEE
Q 012996 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---------PSVIDAIALDP-----AE---HVFY 234 (451)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------~~~i~~~~~~~-----~~---~~l~ 234 (451)
....++|++++.+.-| +++.|+.+|.+.|.|+|....+..-.. ...++++.|.. ++ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 4557899999998765 999999999999999998888776442 23577777752 32 5789
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEE-Eec--C-------------------CEEEEEcCCCcE
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLA-YST--G-------------------DLLISGSEDGMV 292 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~--~-------------------~~l~s~~~dg~i 292 (451)
+|+..|.+.+|.+-... ...+..........+.++|..+. ++. + .-++....+..+
T Consensus 160 vGTn~G~v~~fkIlp~~--~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~i 237 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSS--NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDI 237 (395)
T ss_dssp EEETTSEEEEEEEEE-G--GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEE
T ss_pred EEeCCCCEEEEEEecCC--CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccce
Confidence 99999999999885311 01111122222234556666554 221 1 123334456779
Q ss_pred EEEeCCCCceEEEeecCCCCeeEEEE-----EecCceeeeccCCCCccccccCCCC
Q 012996 293 RVWDPITHNIVRMFRLAKGPVNNILV-----VRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~v~~l~~-----s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+++...+.+..+......-....+.+ ...+..|++-..+|.++++.+..-+
T Consensus 238 rv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 238 RVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp EEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred EEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 99999888776655422223334455 3467788888999999999987643
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=3.5e-06 Score=79.58 Aligned_cols=109 Identities=13% Similarity=0.138 Sum_probs=82.9
Q ss_pred eEEEECCCCcEEEEecc----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 84 KPIAANSHGTYIAGGGQ----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+-..|+|...++|+++. .|.|.||- .+|++-.... ..-.+++++|+|..-.|+.|=.-|.+.+|...+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~------ 90 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT------ 90 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC------
Confidence 44568898888887753 57899885 6776543321 112246799999888888888889999998743
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
...-.....|+.+|..+.|+++| ..++++..-|.|.+|.+.
T Consensus 91 -----~e~htv~~th~a~i~~l~wS~~G--~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 91 -----TETHTVVETHPAPIQGLDWSHDG--TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -----ceeeeeccCCCCCceeEEecCCC--CeEEEcCCCceeEEEEee
Confidence 22233345699999999999999 899999999999999875
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.41 E-value=0.00051 Score=63.52 Aligned_cols=180 Identities=9% Similarity=0.054 Sum_probs=94.2
Q ss_pred cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-------eeeeccccCCeeEEEEccCC
Q 012996 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSEDG 134 (451)
Q Consensus 62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~ 134 (451)
.|.||+.....+.......+.+.++.|+.+..++ +...||.+++||+. |+. +.........+....+..+|
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 5999998776655444444899999999876655 45789999999985 333 11111122223333444456
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 214 (451)
-.+++ .++.+.+.+-......................+........++.+. ...+....++.+.+.+-.....
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~--~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR--VVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc--ceEEEEecCCEEEEEEcccccc---
Confidence 44444 3444433322110000000000000000011111110001222332 3444445556666444332211
Q ss_pred eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+...+++..+++||+++++|.-..+|.+.+.+.+-.
T Consensus 213 i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 334568999999999999999999999998876543
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.41 E-value=6e-06 Score=75.39 Aligned_cols=87 Identities=24% Similarity=0.389 Sum_probs=70.1
Q ss_pred EEEEcCCCce----eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996 202 KVWSLLKGRL----LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (451)
Q Consensus 202 ~iwd~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 277 (451)
.+|++..++. +..+..++.+.+++++|+...|+.|+.||.|.+||...+. .......-.++.++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~-----------t~~~ka~~~P~~iaW 307 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV-----------TLLAKAEFIPTLIAW 307 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe-----------eeeeeecccceEEEE
Confidence 4577655432 2345578999999999999999999999999999997752 223334567889999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+| |.++++|+..|.+.+||+.-
T Consensus 308 Hp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 308 HPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCcEEEEEcCCceEEEEEeec
Confidence 99 99999999999999999764
No 343
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.3e-05 Score=69.30 Aligned_cols=222 Identities=13% Similarity=0.042 Sum_probs=127.5
Q ss_pred EEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
+++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-----------~~~vssy~a~-~~~wSC~ 242 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-----------SCVVSSYIAY-NQIWSCC 242 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-----------ceeeeheecc-CCceeee
Confidence 56666555566666678889999999999666 788899999999999955 4455666666 7899999
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCcee-eeee---cccceeEEEE------CCCCCEEEEEeCCCcEEEEEccCCCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLL-RNIV---FPSVIDAIAL------DPAEHVFYAGSRDGSIYIAALNAESP 252 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~---~~~~i~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~~ 252 (451)
|.-+.. ++++.|-..|.|.+||++..+-. ..+. ...+|..++. .+.+.+++....+ +..|.+.....
T Consensus 243 wDlde~-h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~ 319 (463)
T KOG1645|consen 243 WDLDER-HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE 319 (463)
T ss_pred eccCCc-ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc
Confidence 998874 89999999999999999865422 1111 1223333332 3344555544433 34454433221
Q ss_pred CCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCc------EEE-EeCCCCceEEEee-cC-CC------CeeE
Q 012996 253 STSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGM------VRV-WDPITHNIVRMFR-LA-KG------PVNN 315 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~------i~i-wd~~~~~~~~~~~-~~-~~------~v~~ 315 (451)
. +.++..+ +..+...++.+.+ ...|++.-.+-+ |.. -|-.+|.++-.-+ .+ .+ .-..
T Consensus 320 ~-----~p~vlel-e~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~a 393 (463)
T KOG1645|consen 320 C-----LPCVLEL-EPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQA 393 (463)
T ss_pred C-----CCccccc-CCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccc
Confidence 0 1111111 2345566667766 334444333210 111 1223333332211 11 11 1112
Q ss_pred EEEEecCceeee-ccCCCCccccccCCCCCCC
Q 012996 316 ILVVRRPLYLNL-GSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 316 l~~s~~~~~l~~-~s~d~~i~iw~~~~~~~~~ 346 (451)
+.-.++..+++. +...+.+.+||.......+
T Consensus 394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred eeccccccEEEEecCCcceeEEeccchhheee
Confidence 223455566654 4555789999988765544
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.39 E-value=0.00026 Score=64.57 Aligned_cols=237 Identities=15% Similarity=0.157 Sum_probs=129.0
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-------------------------------------------eeee
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------------------------------------------LKKW 118 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------------------------------------~~~~ 118 (451)
.|+.+.|.++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578899999988999999999998886532210 0112
Q ss_pred ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCC---eeEE
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGV---SATI 192 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~---~~~l 192 (451)
....++|++++.|. =-+++.|..+|.+.|.|++............ ...-......++++.|.. .++ .-.+
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccceEE
Confidence 23468899999974 4589999999999999996521111000000 001112345677887762 222 2578
Q ss_pred EEeeCCCcEEEEEcCC---Cceeeee-----ecccceeEEE-ECCC--------------------CCEEEEEeCCCcEE
Q 012996 193 VSASEDRTCKVWSLLK---GRLLRNI-----VFPSVIDAIA-LDPA--------------------EHVFYAGSRDGSIY 243 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~---~~~~~~~-----~~~~~i~~~~-~~~~--------------------~~~l~~~~~dg~i~ 243 (451)
++|+..|.+.+|.+.- +.....+ .+.+.+..+. ++.+ -.-+++...+..++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 8999999999998741 2111111 2344444443 2211 01245555678899
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEE-----ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC----CCe
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY-----ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK----GPV 313 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~v 313 (451)
++...+.+ .....+ ........+.+ .. +..|++-..+|.|++|.+..-+.+..+..+. ..+
T Consensus 239 v~~~~~~k--------~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 239 VFKPPKSK--------GAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp EE-TT-----------EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred EEeCCCCc--------ccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 99887754 112222 22222333444 23 6778888999999999999999998887643 246
Q ss_pred eEEEEEecCceeeeccCC
Q 012996 314 NNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 314 ~~l~~s~~~~~l~~~s~d 331 (451)
....++++|..++-.+..
T Consensus 310 ~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp TT-EE-TTS-EEEE-SSS
T ss_pred cccEECCCCCEEEEeCcc
Confidence 677889999888666544
No 345
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.35 E-value=6.5e-05 Score=69.99 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=90.2
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
++..+.-.+ +...+++++.|++. |.+.+|+-..+....... ....+..+..+++..++|.|+..|.|.++-+..+
T Consensus 32 ~~~~v~lTc--~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTC--VDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEE--eecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 334444444 67889999999998 999999988777654443 3456667778899999999999999999988764
Q ss_pred cce---ee--e-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 113 RLL---KK--W-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 113 ~~~---~~--~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
..- .. . +.|...|++++|++++..+++|...|.|..-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 221 11 1 34788999999999999999999999999988854
No 346
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.32 E-value=0.0036 Score=60.01 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=65.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCC-CCCceEEec---ceEeeccCcccCCCCCCccEEEEECCCCceeeeecC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS-PPHGLACVG---QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP 79 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~---~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~ 79 (451)
.|+.++ .++.|.-.|..+|+.+.++..... ......+.. ....-.+..++.++.+ +.|.-.|..+++.......
T Consensus 71 ~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d-g~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD-ARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC-CEEEEEECCCCCEEeeccc
Confidence 455666 688999999999999887754221 011100100 0011123445555566 8999999999988766432
Q ss_pred CCC--eeEEEECC---CCcEEEEec------cCCCEEEEEcCCCcceeee
Q 012996 80 AEP--IKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 80 ~~~--v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 118 (451)
... -..+.-+| ++ .++++. .+|.|.-+|.++|+.+..+
T Consensus 149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 110 01111122 34 444443 2688999999999887664
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.003 Score=58.08 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=174.3
Q ss_pred eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CCeeEEEECCCCc
Q 012996 15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGT 93 (451)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 93 (451)
+.+++..+......+..+. .+..+. +.+++..+.+.......+..-+............. .....++.++.+.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~-----~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~ 86 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVA-----VNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN 86 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeE-----EcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC
Confidence 7888877777666665443 233333 66677444444332134444444422222211111 3456788888887
Q ss_pred EE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhccccccee
Q 012996 94 YI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 94 ~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
.+ +....++.|.+.|..+.+.......-. ....++++++++.+..+.. ++.+.+.|..+ .....
T Consensus 87 ~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-----------~~~~~ 154 (381)
T COG3391 87 KVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-----------NKVTA 154 (381)
T ss_pred eEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-----------CeEEE
Confidence 54 444456889999987777766654332 5678999999988777665 57888888744 22333
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee-----eeecccceeEEEECCCCCEEEEEeCC---Cc
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR-----NIVFPSVIDAIALDPAEHVFYAGSRD---GS 241 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~d---g~ 241 (451)
....-..+ ..+++.+++. ..+++-..++.|.+.|.......+ ..........+.++|++.++++.... +.
T Consensus 155 ~~~vG~~P-~~~a~~p~g~-~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGN-KVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EEecCCCc-ceEEECCCCC-eEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence 32222223 7889999883 244444588999999977665553 23344556788999999988776554 48
Q ss_pred EEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeecCCC---Cee
Q 012996 242 IYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRLAKG---PVN 314 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~---~v~ 314 (451)
+...|..+.. .... ..+-. ....+..+| +.++.+.. ..+.+.+.|..+......+..... .+.
T Consensus 233 v~~id~~~~~---------v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 233 VLKIDTATGN---------VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EEEEeCCCce---------EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence 8888888753 1111 11111 456678889 88887774 458899999998888877664433 456
Q ss_pred EEEEEecC
Q 012996 315 NILVVRRP 322 (451)
Q Consensus 315 ~l~~s~~~ 322 (451)
.+++.+..
T Consensus 303 ~~~~~~~~ 310 (381)
T COG3391 303 SIAISPLY 310 (381)
T ss_pred eccceeec
Confidence 66666644
No 348
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00071 Score=64.46 Aligned_cols=226 Identities=11% Similarity=0.086 Sum_probs=129.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC--CCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCc
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQ 72 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~ 72 (451)
.++.++ .+|.|.-+|..+|+.+..+...... ...+..-. -..+ ..+++++ .+ |.+.-+|..+++
T Consensus 112 ~V~v~~-~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP--~v~~-~~v~vg~~~~~~~~~~~~-g~v~alD~~TG~ 186 (488)
T cd00216 112 KVFFGT-FDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAP--TIVK-KLVIIGSSGAEFFACGVR-GALRAYDVETGK 186 (488)
T ss_pred eEEEec-CCCeEEEEECCCCCEeeeecCCCCcCcceEecCCC--EEEC-CEEEEeccccccccCCCC-cEEEEEECCCCc
Confidence 456667 7899999999999999877543321 00011111 1112 2233332 23 789999999888
Q ss_pred eeeeecCC-C--------------------Ce-eEEEECCCCcEEEEeccCC------------------CEEEEEcCCC
Q 012996 73 VEVKSLPA-E--------------------PI-KPIAANSHGTYIAGGGQSG------------------DIYMWEVASG 112 (451)
Q Consensus 73 ~~~~~~~~-~--------------------~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~ 112 (451)
........ . .| ...++.+.+..++.++.++ .|.-+|..+|
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 77654321 0 01 1234445566777777665 6999999999
Q ss_pred cceeeecc--ccC----CeeEEEEc----cCCc---EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996 113 RLLKKWHA--HYR----AVTCLVFS----EDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (451)
Q Consensus 113 ~~~~~~~~--~~~----~v~~~~~~----~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (451)
+.+..++. |.. ......+. -++. .++.++.+|.+...|..++........ . ..
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~---------~-----~~ 332 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE---------V-----EQ 332 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe---------e-----cc
Confidence 98877642 211 00001111 1233 577888899999999977533221110 0 00
Q ss_pred EEEEeecCCeeEEE-----------------EeeCCCcEEEEEcCCCceeeeeecc---------cceeEEEECCCCCEE
Q 012996 180 DIVIGYGGVSATIV-----------------SASEDRTCKVWSLLKGRLLRNIVFP---------SVIDAIALDPAEHVF 233 (451)
Q Consensus 180 ~i~~~~~~~~~~l~-----------------s~~~d~~i~iwd~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l 233 (451)
.+...+ + ..++ ....+|.+.-.|..+++.+...... .+...-.....+..+
T Consensus 333 ~~~~~~-~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 333 PMAYDP-G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred ccccCC-c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 111111 1 1111 1234678888999999888777643 111111111256789
Q ss_pred EEEeCCCcEEEEEccCCC
Q 012996 234 YAGSRDGSIYIAALNAES 251 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~ 251 (451)
++++.||.++.+|..+++
T Consensus 410 ~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 410 FAGAADGYFRAFDATTGK 427 (488)
T ss_pred EEECCCCeEEEEECCCCc
Confidence 999999999999999885
No 349
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.26 E-value=0.00086 Score=58.92 Aligned_cols=243 Identities=17% Similarity=0.180 Sum_probs=131.2
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccc--
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLY-- 167 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-- 167 (451)
..++.|+.|+.+| +++++........... +...|..+...++-+.|++-+ |+.+.++++................
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998888 9999983332222222 233499999998777666654 5999999997643322110000000
Q ss_pred -eecccCCcCceeEEE-EeecCCeeEEEEeeCCCcEEEEEcCCC-----ceeeeeecccceeEEEECCCCCEEEEEeCCC
Q 012996 168 -LHSFTGHTLRITDIV-IGYGGVSATIVSASEDRTCKVWSLLKG-----RLLRNIVFPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 168 -~~~~~~~~~~i~~i~-~~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
..........+...+ -..... ...+.......|.+|..... +..+.+..+..+.+++|. ++.+++|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~-~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEG-SRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeecccccc-ceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-
Confidence 000111222333333 111222 33344444558888877653 466777789999999998 6677777654
Q ss_pred cEEEEEccCCCCCCCCCCce---eeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEE--EeecCCCCeeE
Q 012996 241 SIYIAALNAESPSTSSYGMH---IIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVR--MFRLAKGPVNN 315 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~ 315 (451)
...+.|+.+.....-..... ..........++..+....+.+|++. |..-.+.| ..|++.+ .+.-. .....
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~-~~G~~~r~~~i~W~-~~p~~ 233 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVN-KNGEPSRKSTIQWS-SAPQS 233 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEc-CCCCcCcccEEEcC-CchhE
Confidence 47888888654211000000 00001112234444444435566543 33333344 3454443 33332 34555
Q ss_pred EEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 316 ILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 316 l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
+++. ..||+..+. +.|-||++.++++.+
T Consensus 234 ~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 234 VAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred EEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 5653 357777665 449999998876544
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.23 E-value=0.00031 Score=63.14 Aligned_cols=215 Identities=16% Similarity=0.197 Sum_probs=123.9
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecc-eEeec----cCcccCCCC-----C---C-ccEEEEECCCC-----cee
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQ-RFLAS----SQLREQPSA-----S---S-GSILYWSWSKP-----QVE 74 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~----~~~l~~~~~-----d---~-g~i~vw~~~~~-----~~~ 74 (451)
.|++.|..+.+.+.++.-.. ...+.++.. .+..+ ..++++|.. + . |.|.++++... +..
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~--~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEP--NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEEEEEET--TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEEEECCC--CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 57788877777766654332 223333331 12221 355555432 1 1 88999999884 222
Q ss_pred --eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 75 --VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 75 --~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
......++|++++-- ++. |+++. ++.|.+|++...+ ....-. .....+.++... +++++.|.....+.++.
T Consensus 81 ~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 223347889999876 444 54433 4789999998877 333221 122355566555 66899999888888886
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------Cc----eeeeeeccc
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GR----LLRNIVFPS 219 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~----~~~~~~~~~ 219 (451)
.... ........-......++++.+..++ +.++.+..+|.+.++.... +. ....+..+.
T Consensus 156 ~~~~--------~~~l~~va~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~ 225 (321)
T PF03178_consen 156 YDEE--------NNKLILVARDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGD 225 (321)
T ss_dssp EETT--------TE-EEEEEEESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS
T ss_pred EEcc--------CCEEEEEEecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCC
Confidence 5320 1111111122345668888888676 5899999999999998752 22 234445677
Q ss_pred ceeEE---EECCC--C------CEEEEEeCCCcEEEE
Q 012996 220 VIDAI---ALDPA--E------HVFYAGSRDGSIYIA 245 (451)
Q Consensus 220 ~i~~~---~~~~~--~------~~l~~~~~dg~i~i~ 245 (451)
.|+++ ++.|. + ..++.++.+|.|...
T Consensus 226 ~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 226 IVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 78888 55552 2 248888899988843
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.00089 Score=58.79 Aligned_cols=211 Identities=15% Similarity=0.129 Sum_probs=122.8
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeeec-----CCCCee
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL-----PAEPIK 84 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~~-----~~~~v~ 84 (451)
..+.|.-||..+|+.. .+... ..+.+.. ....+..|+++. ..+.+++.+.+.. ..... .....+
T Consensus 45 ~~~~i~r~~~~~g~~~-~~~~p----~~~~~~~--~~d~~g~Lv~~~---~g~~~~~~~~~~~~t~~~~~~~~~~~~r~N 114 (307)
T COG3386 45 LGGRIHRLDPETGKKR-VFPSP----GGFSSGA--LIDAGGRLIACE---HGVRLLDPDTGGKITLLAEPEDGLPLNRPN 114 (307)
T ss_pred CCCeEEEecCCcCceE-EEECC----CCcccce--eecCCCeEEEEc---cccEEEeccCCceeEEeccccCCCCcCCCC
Confidence 5667777777655432 22211 2222222 222333444333 3466677654444 21111 234667
Q ss_pred EEEECCCCcEEEEecc-----C----CCEEEEEcC-CCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcc
Q 012996 85 PIAANSHGTYIAGGGQ-----S----GDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLT 153 (451)
Q Consensus 85 ~~~~~~~~~~l~~~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~ 153 (451)
.+...|+|.+-++... . ..-.+|-+. .+..+..+..+-..-+.|+||||++.|+.+.. .+.|.-|++..
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 8888999987766433 0 111344444 56666666666667789999999988777655 47788887742
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcCCCceeeeeecc-cceeEEEEC-CCC
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLLKGRLLRNIVFP-SVIDAIALD-PAE 230 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~-~~i~~~~~~-~~~ 230 (451)
.. ...........+....+..-.++...++ .+.+++..+| .|.+|+.. ++.+..+..+ ..+++++|- |+.
T Consensus 195 ~~----g~~~~~~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 195 AT----GPIGGRRGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred cc----CccCCcceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence 00 0001111122233355666777887777 5554555554 89999987 9999999877 778888884 355
Q ss_pred CEEEEEeC
Q 012996 231 HVFYAGSR 238 (451)
Q Consensus 231 ~~l~~~~~ 238 (451)
+.|++.+.
T Consensus 268 ~~L~iTs~ 275 (307)
T COG3386 268 NTLYITSA 275 (307)
T ss_pred CEEEEEec
Confidence 55555443
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0028 Score=58.32 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=134.7
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeecccc
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHY 122 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~ 122 (451)
.++.+..+.+...+++.|.+.|..................++++|++..+.++.. ++.+.+.|..+++.+.....-.
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~ 160 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN 160 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC
Confidence 6777776555555558999999777776655555557889999999987766654 6889999998888887755444
Q ss_pred CCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC--
Q 012996 123 RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-- 198 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d-- 198 (451)
.+ ..++++|+|..++.+. .++.|.+.|........ ........-...-..+.+.+++ ..++... .+
T Consensus 161 ~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-------~~~~~~~~~~~~P~~i~v~~~g--~~~yV~~~~~~~ 230 (381)
T COG3391 161 TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-------GSVGSLVGVGTGPAGIAVDPDG--NRVYVANDGSGS 230 (381)
T ss_pred Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-------cccccccccCCCCceEEECCCC--CEEEEEeccCCC
Confidence 45 8999999999766655 68899999974411100 0000011122233567888888 4443333 32
Q ss_pred CcEEEEEcCCCceeee-eeccc-ceeEEEECCCCCEEEEEeCC-CcEEEEEccCCC
Q 012996 199 RTCKVWSLLKGRLLRN-IVFPS-VIDAIALDPAEHVFYAGSRD-GSIYIAALNAES 251 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~-~~~~~-~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 251 (451)
+.+...|..++..... ..... ....+..+|++..+++.... +.+.+.|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 6899999988877665 22222 56778999999999998544 789998887753
No 353
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.18 E-value=0.00013 Score=67.23 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=110.6
Q ss_pred EeeccCcccCCCCCC---ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCC--EEEEEcCCCcceeeec
Q 012996 46 FLASSQLREQPSASS---GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGD--IYMWEVASGRLLKKWH 119 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~---g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~--i~iwd~~~~~~~~~~~ 119 (451)
|+|+++.++...... ..+.+++++++.........+.-..-+|+|||+.|+.. ..||. |+++|+..+... .+.
T Consensus 200 ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt 278 (425)
T COG0823 200 WSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLT 278 (425)
T ss_pred cCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecc
Confidence 999998877664332 24899999888766555555666777899999987654 44554 777788776633 344
Q ss_pred cccCCeeEEEEccCCcEEEEeeC-CCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996 120 AHYRAVTCLVFSEDGSFLISGSE-DGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 120 ~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
...+.-..-.|+|||+.++-.+. .|. |.+++... ... ..+......-..-.|+|++ .+++..+
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g----------~~~--~riT~~~~~~~~p~~SpdG--~~i~~~~ 344 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG----------SQV--TRLTFSGGGNSNPVWSPDG--DKIVFES 344 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC----------Cce--eEeeccCCCCcCccCCCCC--CEEEEEe
Confidence 33344446789999998875544 555 44445432 111 2222222222255688888 5555544
Q ss_pred C-CCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996 197 E-DRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 197 ~-d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
. +|. |.+.|+.++...+.+........-.|.|+++.+...+.
T Consensus 345 ~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 345 SSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence 3 444 66777766665555555555566678888877665443
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.18 E-value=0.0021 Score=56.49 Aligned_cols=232 Identities=15% Similarity=0.120 Sum_probs=133.3
Q ss_pred eccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---------
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--------- 118 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------- 118 (451)
..++.|+.|..+ | +.+++...............|..+...|+-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECC-C-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 356778888665 6 9999984444444444455699999999877776644 599999998765443311
Q ss_pred -----ccccCCeeEEE--EccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc-cceecccCCcCceeEEEEeecCCee
Q 012996 119 -----HAHYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH-LYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 119 -----~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
......+...+ -...+...+.......|.+|...... ... ...+.+. -...+.+++|.. +
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~-------~~f~~~~ke~~-lp~~~~~i~~~~----~ 149 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR-------NSFSKLLKEIS-LPDPPSSIAFLG----N 149 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc-------ccccceeEEEE-cCCCcEEEEEeC----C
Confidence 11223344444 11233334444445589999885411 011 2333333 346778888873 4
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeecc-------------cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
.++.|..+ ...+.|+.++.....+... .++..+.. +++.+|++- +..-.+.|......
T Consensus 150 ~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~----- 220 (275)
T PF00780_consen 150 KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPS----- 220 (275)
T ss_pred EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcC-----
Confidence 66666644 4888999877654433211 12223333 344555542 33334444433211
Q ss_pred CceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 258 GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
+ ...+.- ...+.++++. ..+|++.+.++ |.||++.++++++++...
T Consensus 221 --r-~~~i~W-~~~p~~~~~~-~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 221 --R-KSTIQW-SSAPQSVAYS-SPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred --c-ccEEEc-CCchhEEEEE-CCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 1 112222 2355566665 46777766654 999999999999998764
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.16 E-value=0.00025 Score=65.63 Aligned_cols=211 Identities=12% Similarity=0.073 Sum_probs=108.7
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV 125 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 125 (451)
++|+|+++++++. |.-.++......... .+.-....|.+.++ +|+-..++.|.|+.--+.+....++.. ..+
T Consensus 40 ~npngr~v~V~g~--geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~ 111 (443)
T PF04053_consen 40 HNPNGRFVLVCGD--GEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP-FSV 111 (443)
T ss_dssp E-TTSSEEEEEET--TEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S-S-E
T ss_pred ECCCCCEEEEEcC--CEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC-ccc
Confidence 9999999999554 788888843333222 24456788988655 555566788999743344433344322 233
Q ss_pred eEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEE
Q 012996 126 TCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWS 205 (451)
Q Consensus 126 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd 205 (451)
..|-. |..|+..+.+ .|.+||+.+ ...+..+... +|..+.|++++ .+++..+.+ .+.+++
T Consensus 112 ~~If~---G~LL~~~~~~-~i~~yDw~~-----------~~~i~~i~v~--~vk~V~Ws~~g--~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 112 EKIFG---GNLLGVKSSD-FICFYDWET-----------GKLIRRIDVS--AVKYVIWSDDG--ELVALVTKD-SIYILK 171 (443)
T ss_dssp EEEE----SSSEEEEETT-EEEEE-TTT-------------EEEEESS---E-EEEEE-TTS--SEEEEE-S--SEEEEE
T ss_pred ceEEc---CcEEEEECCC-CEEEEEhhH-----------cceeeEEecC--CCcEEEEECCC--CEEEEEeCC-eEEEEE
Confidence 44432 7777776655 899999954 4455555533 48899999987 777777655 677877
Q ss_pred cCCC-----------ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCccee
Q 012996 206 LLKG-----------RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVT 273 (451)
Q Consensus 206 ~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 273 (451)
.... .....+. ....|.+.+|..+ -++++ +.. .+.. +-.+. ...+..-..++.
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt-T~~-~lkY--l~~Ge----------~~~i~~ld~~~y 236 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT-TSN-HLKY--LVNGE----------TGIIAHLDKPLY 236 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE--TT-EEEE--EETTE----------EEEEEE-SS--E
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE-cCC-eEEE--EEcCC----------cceEEEcCCceE
Confidence 5433 0233333 2678889999766 33333 333 5555 33322 222322345666
Q ss_pred EEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 274 CLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 274 ~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
=+.+.+ .+.+.....|+.|..+.+..
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEEEccCCEEEEEECCCCEEEEEECH
Confidence 666666 67777777777777776653
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.0017 Score=58.39 Aligned_cols=218 Identities=19% Similarity=0.256 Sum_probs=121.2
Q ss_pred ccEEEEECCCCceeee--ecCCCCeeEEEE---CC----CCcEEEEecc----------CCCEEEEEcCCC----cceee
Q 012996 61 GSILYWSWSKPQVEVK--SLPAEPIKPIAA---NS----HGTYIAGGGQ----------SGDIYMWEVASG----RLLKK 117 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~--~~~~~~v~~~~~---~~----~~~~l~~~~~----------dg~i~iwd~~~~----~~~~~ 117 (451)
..|++.|..+.+.... ....+.+.+++. .. ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888776664422 224556665554 32 2578887743 288999999884 12222
Q ss_pred e--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996 118 W--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (451)
Q Consensus 118 ~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~ 195 (451)
+ ....++|++++-. ++. |+.+. .+.|.+|++... ..............+.++... + ++++.|
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~---------~~l~~~~~~~~~~~i~sl~~~--~--~~I~vg 145 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNS---------KTLLKKAFYDSPFYITSLSVF--K--NYILVG 145 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETT---------SSEEEEEEE-BSSSEEEEEEE--T--TEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCc---------ccchhhheecceEEEEEEecc--c--cEEEEE
Confidence 2 3457889998876 344 44444 468999999551 101111122223355555543 4 689999
Q ss_pred eCCCcEEEEEcCC-Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC--CceeeeeeccCC
Q 012996 196 SEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLSDHS 269 (451)
Q Consensus 196 ~~d~~i~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~ 269 (451)
..-..+.++.+.. ...+..+. .+..+.++.+-++++.++++..+|.+.++............ .......+. ..
T Consensus 146 D~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg 224 (321)
T PF03178_consen 146 DAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LG 224 (321)
T ss_dssp ESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--S
T ss_pred EcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CC
Confidence 9888888875543 22233332 45668888888666799999999999999887533221111 122233332 23
Q ss_pred cceeEE---EEec----C-----CEEEEEcCCCcEEEE
Q 012996 270 KAVTCL---AYST----G-----DLLISGSEDGMVRVW 295 (451)
Q Consensus 270 ~~v~~~---~~~~----~-----~~l~s~~~dg~i~iw 295 (451)
..|+++ .+.| . ..++.++.+|.|.+.
T Consensus 225 ~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 225 DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 456666 3222 1 136667777777633
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.10 E-value=0.00028 Score=69.02 Aligned_cols=139 Identities=15% Similarity=0.178 Sum_probs=95.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeecc-------CcccCCCCCCccEEEEECCCCc--ee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASS-------QLREQPSASSGSILYWSWSKPQ--VE 74 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~~~~~d~g~i~vw~~~~~~--~~ 74 (451)
+|.... ....|.--|+++|+.+..++.+...+ |.. |.|+. ...++|-.+ ..+..||.+-.. +.
T Consensus 496 il~~~~-~~~~ly~mDLe~GKVV~eW~~~~~~~--v~~----~~p~~K~aqlt~e~tflGls~-n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 496 ILLDPN-NPNKLYKMDLERGKVVEEWKVHDDIP--VVD----IAPDSKFAQLTNEQTFLGLSD-NSLFRIDPRLSGNKLV 567 (794)
T ss_pred EeecCC-CCCceEEEecCCCcEEEEeecCCCcc--eeE----ecccccccccCCCceEEEECC-CceEEeccCCCCCcee
Confidence 344444 56789999999999999998765332 433 33432 222334444 889999987432 22
Q ss_pred ee----ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 75 VK----SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 75 ~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
.. ........|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++.+. ..|.+++
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred eccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEE
Confidence 11 1234577888887776 6899999999999994333334456777899999999999999887665 4777877
Q ss_pred Cc
Q 012996 151 LL 152 (451)
Q Consensus 151 ~~ 152 (451)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 63
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.06 E-value=0.0014 Score=59.80 Aligned_cols=250 Identities=12% Similarity=0.083 Sum_probs=129.8
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC------------
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------------ 79 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~------------ 79 (451)
.+.+.|||+++++....... ...+.... |+|+|+.+|.... +.|.+++..++........
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~----~~~~~~~~--~sP~g~~~~~v~~--~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP----PPKLQDAK--WSPDGKYIAFVRD--NNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E----ETTBSEEE--E-SSSTEEEEEET--TEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred ceeEEEEecCCCceEECcCC----ccccccce--eecCCCeeEEEec--CceEEEECCCCCeEEeccccceeEEcCccce
Confidence 35688999998766533322 23444555 9999999988865 7899998876643322211
Q ss_pred ------CCCeeEEEECCCCcEEEEeccC-CC-----------------------------------EEEEEcCCCccee-
Q 012996 80 ------AEPIKPIAANSHGTYIAGGGQS-GD-----------------------------------IYMWEVASGRLLK- 116 (451)
Q Consensus 80 ------~~~v~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~iwd~~~~~~~~- 116 (451)
-+.-..+-||||+++||....| .. +.|+|+.+++...
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence 1234678899999998865332 11 3345554444321
Q ss_pred ee----ccccCCeeEEEEccCCcEEEEe--eCCC---cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe-ec
Q 012996 117 KW----HAHYRAVTCLVFSEDGSFLISG--SEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG-YG 186 (451)
Q Consensus 117 ~~----~~~~~~v~~~~~~~~~~~l~s~--~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~ 186 (451)
.. ..-...+..+.|.+++..|+.. ..+. .+.++|..++..... ......+--..-....+. ++
T Consensus 174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~-------~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV-------LEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE-------EEEESSSSSSSSSEEEE-TTT
T ss_pred eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE-------EEecCCcceeeecccccccCC
Confidence 11 1234457788999988844433 2222 355566644211100 000111111112244444 44
Q ss_pred CCeeEEEEeeCCCcEE--EEEcCCCceeeeeeccccee-EEEECCCCCEEE-EEeCCC----cEEEEEcc-CCCCCCCCC
Q 012996 187 GVSATIVSASEDRTCK--VWSLLKGRLLRNIVFPSVID-AIALDPAEHVFY-AGSRDG----SIYIAALN-AESPSTSSY 257 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~-~~~~dg----~i~i~d~~-~~~~~~~~~ 257 (451)
+. .++.....+|.-+ +++...+.........-.|. -+.++++++.++ ++..++ .++..++. .+.
T Consensus 247 ~~-~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~------ 319 (353)
T PF00930_consen 247 GN-EFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE------ 319 (353)
T ss_dssp SS-EEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE------
T ss_pred CC-EEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC------
Confidence 43 6666666887644 45555555332222445564 467788766554 554422 45555555 321
Q ss_pred CceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
...+......-..+.||| +++++...
T Consensus 320 ----~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 320 ----PKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ----EEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ----eEeccCCCCCceEEEECCCCCEEEEEE
Confidence 223333222226899999 77766543
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.98 E-value=0.0086 Score=53.42 Aligned_cols=296 Identities=9% Similarity=0.003 Sum_probs=127.6
Q ss_pred ECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCC-CCeeEEEECCCCcEE
Q 012996 19 DLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYI 95 (451)
Q Consensus 19 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l 95 (451)
|..||..+..+.....+.........-|.++|+.|+.++.-+ ..+.+.|+.+++........ .......++|+++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 677888888776555444434333333888997776665533 45666677887776554432 334466778888887
Q ss_pred EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc--cCCcEEEEeeCCC----------------------cEEEeeC
Q 012996 96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDG----------------------CVRIWSL 151 (451)
Q Consensus 96 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg----------------------~i~vwd~ 151 (451)
+-......|+-.|+.+.+....+......+-...|. .|+..++..-... .|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 665555678889999987666665556655555664 3455543321110 0111111
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCc-EEEEEcCC-Cceeeeee---cccceeE
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRT-CKVWSLLK-GRLLRNIV---FPSVIDA 223 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~-i~iwd~~~-~~~~~~~~---~~~~i~~ 223 (451)
.+ . ....+..-...+..+.++|... ..|+-|- .+.. -+||-+++ +.....+. ....+..
T Consensus 176 ~t-----------G-~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gH 242 (386)
T PF14583_consen 176 KT-----------G-ERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGH 242 (386)
T ss_dssp TT--------------EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEE
T ss_pred CC-----------C-ceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccc
Confidence 11 0 0111112233455667777653 3444332 2221 36665543 22222222 2233444
Q ss_pred EEECCCCCEEEEEe-----CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-------
Q 012996 224 IALDPAEHVFYAGS-----RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG------- 290 (451)
Q Consensus 224 ~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg------- 290 (451)
=-|.|+|..+.--+ .+..|.-+|..+... ..+... .+...+..++ +.+++-=+.|.
T Consensus 243 Efw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-------~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 243 EFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-------RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADA 311 (386)
T ss_dssp EEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-------EEEEEE-----SEEEEEE-TTSSEEEEEE----------
T ss_pred ccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-------eEEEeC----CceeeeEEcCCCCEEEecCCCCCcccccc
Confidence 56889887765422 233455666665431 111111 1222333345 55554434332
Q ss_pred ---------cEEEEeCCCCceEEEeecCC----------C-CeeEEEEEecCceeeec-cCCCCcccccc
Q 012996 291 ---------MVRVWDPITHNIVRMFRLAK----------G-PVNNILVVRRPLYLNLG-SFSNPHTSSRR 339 (451)
Q Consensus 291 ---------~i~iwd~~~~~~~~~~~~~~----------~-~v~~l~~s~~~~~l~~~-s~d~~i~iw~~ 339 (451)
-|+++++..+.... +..|. . .=....|+|||++++-. ...|...||-+
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 45677877665432 22221 1 23568999999987654 45566655543
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.0079 Score=52.92 Aligned_cols=226 Identities=15% Similarity=0.104 Sum_probs=126.4
Q ss_pred EECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 87 AANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 87 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
.|.++.. ++.+--..+.|.-|+..+++.. .+. +.+.+.++..-..+..|+++.. -+.+++..++... .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~-------t 99 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKI-------T 99 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCcee-------E
Confidence 3566665 3444455677888887655432 222 2223344444334444555433 3556665331110 0
Q ss_pred cceecccCC-cCceeEEEEeecCCeeEEEEeeC-----------CCcEEEEEcCCCceeeeeec-ccceeEEEECCCCCE
Q 012996 166 LYLHSFTGH-TLRITDIVIGYGGVSATIVSASE-----------DRTCKVWSLLKGRLLRNIVF-PSVIDAIALDPAEHV 232 (451)
Q Consensus 166 ~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 232 (451)
.......+. ....+...+.+++ .+.++... -|.++.+|. .+...+.+.. -...+.++|||+++.
T Consensus 100 ~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 100 LLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred EeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 011111111 2344566777776 44443332 133455554 4554444442 456688999999988
Q ss_pred EEEEeC-CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC-cEEEEeCCCCceEEEeecC
Q 012996 233 FYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 233 l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~ 309 (451)
|+.+.. .+.|+-|++........ ..........+.+..-.++... |.+.+++..+| .|.+|+.. ++++..+..+
T Consensus 177 ly~aDT~~~~i~r~~~d~~~g~~~--~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 177 LYVADTPANRIHRYDLDPATGPIG--GRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EEEEeCCCCeEEEEecCcccCccC--CcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence 888755 47898888874111110 0111222333456667778877 66665555554 89999988 9999999988
Q ss_pred CCCeeEEEEE-ecCceeeecc
Q 012996 310 KGPVNNILVV-RRPLYLNLGS 329 (451)
Q Consensus 310 ~~~v~~l~~s-~~~~~l~~~s 329 (451)
...+++++|- |+.+.|...+
T Consensus 254 ~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 254 VKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCCccceEeCCCcCEEEEEe
Confidence 7888999986 4555554443
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.96 E-value=0.00014 Score=71.11 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=92.9
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCC-------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 192 IVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPA-------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
|........|+-.|+..|+.+..+.....+.-..+.|+ ...-++|-.+..+..||.+-..... .......
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~---v~~~~k~ 573 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL---VDSQSKQ 573 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce---eeccccc
Confidence 33344568899999999999999985544434455553 3456788889999999998653100 0000111
Q ss_pred eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996 265 LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 265 ~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
+ ......+|++-+...+||+|+.+|.||+||-...+.-..+.+-..||.+|..+.||+++++.+.
T Consensus 574 Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred c-ccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 1 2345667777766889999999999999994332323345566789999999999999876653
No 362
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00068 Score=62.56 Aligned_cols=201 Identities=16% Similarity=0.110 Sum_probs=119.1
Q ss_pred EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee---CC-CcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS---ED-GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (451)
+.+-|.. +.....+......+..-+|+|++..++..+ .. ..+.++++.++ ....+..+.++..
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---------~~~~i~~~~g~~~--- 241 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---------KRPVILNFNGNNG--- 241 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---------ccceeeccCCccC---
Confidence 4444433 544555555556677788999887765432 22 45888998762 3333444444443
Q ss_pred EEEEeecCCeeEEEEeeCCCc--EEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-CC--cEEEEEccCCCCC
Q 012996 180 DIVIGYGGVSATIVSASEDRT--CKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR-DG--SIYIAALNAESPS 253 (451)
Q Consensus 180 ~i~~~~~~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~ 253 (451)
.-.|+|++. .++++...||. |+++|+..+...+ +. ..+.-..-.|+|+|+.++-.+. .| .|++++.....
T Consensus 242 ~P~fspDG~-~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-- 317 (425)
T COG0823 242 APAFSPDGS-KLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-- 317 (425)
T ss_pred CccCCCCCC-EEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--
Confidence 357899985 66777777776 5566777666433 43 3333346679999998876654 44 46666666543
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCc--EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
...+......-..-.|+| |++|+..+. +|. |.+.|+.++..++.+.. ......-.|.|++..+...+
T Consensus 318 --------~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 318 --------VTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred --------eeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-cccCCCCCcCCCCceEEEec
Confidence 122222222222667889 888887764 344 77777766654444332 33344556777777765544
Q ss_pred C
Q 012996 330 F 330 (451)
Q Consensus 330 ~ 330 (451)
.
T Consensus 389 ~ 389 (425)
T COG0823 389 G 389 (425)
T ss_pred c
Confidence 3
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.95 E-value=0.0016 Score=46.55 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=74.3
Q ss_pred eeEEEEee-cCC-eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996 178 ITDIVIGY-GGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS 255 (451)
Q Consensus 178 i~~i~~~~-~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (451)
|+++++.. +++ .+.|++|+.|..|++|+ ....+..+.....+.+++-... ..|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl---- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL---- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----
Confidence 56666654 221 27899999999999998 4578888888888999888776 568889999999999875432
Q ss_pred CCCceeeeeeccCCcceeEEEEec-C----CEEEEEcCCCcEEE
Q 012996 256 SYGMHIIGSLSDHSKAVTCLAYST-G----DLLISGSEDGMVRV 294 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~~~dg~i~i 294 (451)
-..+ ....++++.+.. . .-|++|-.+|.|-+
T Consensus 75 -------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 75 -------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1222 234477777766 3 27889988988743
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0003 Score=63.65 Aligned_cols=133 Identities=12% Similarity=0.244 Sum_probs=98.0
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCE-------EEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV-------FYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~-------l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
-++.++.....++-.|+..|+.+........|+-+.+.|+.+. -++|-.+..|.-||.+-... ..+
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-------~kl 419 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-------NKL 419 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc-------cee
Confidence 4556677778899999999999999997777888888886542 35677889999999985432 123
Q ss_pred eeeccCC----cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE-EEeecCCCCeeEEEEEecCceeeeccC
Q 012996 263 GSLSDHS----KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV-RMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 263 ~~~~~~~----~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
...++|. ....|.+-....++++||.+|.|++||- .+..- ..+.+-..+|..+..+.+|++++..+.
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK 491 (644)
T ss_pred eeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc
Confidence 3333332 2344444444789999999999999996 44433 346777789999999999998876653
No 365
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.0031 Score=52.81 Aligned_cols=253 Identities=14% Similarity=0.168 Sum_probs=147.5
Q ss_pred CCceeeeecCCCCeeEEEECCCC-cEEEEeccCCC-EEEEEcCCCcceeeeccccCC--eeEEEEccCCcEEEEeeCC--
Q 012996 70 KPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGD-IYMWEVASGRLLKKWHAHYRA--VTCLVFSEDGSFLISGSED-- 143 (451)
Q Consensus 70 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~d-- 143 (451)
.+++.....-......|+|+|.. .-++.+-.-|+ ..++|........++....+. .-.-.|||||.+|+..-.|
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd 136 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFD 136 (366)
T ss_pred CCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCC
Confidence 34444444445667788888854 44555555555 678898888776665332221 1234699999998876443
Q ss_pred ---CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC------------------CCcEE
Q 012996 144 ---GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------------------DRTCK 202 (451)
Q Consensus 144 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~------------------d~~i~ 202 (451)
|.|-|||.+. ....+..+..|.-....+.+.+++ +.++.+.. .-.+.
T Consensus 137 ~~rGViGvYd~r~----------~fqrvgE~~t~GiGpHev~lm~DG--rtlvvanGGIethpdfgR~~lNldsMePSlv 204 (366)
T COG3490 137 PNRGVIGVYDARE----------GFQRVGEFSTHGIGPHEVTLMADG--RTLVVANGGIETHPDFGRTELNLDSMEPSLV 204 (366)
T ss_pred CCCceEEEEeccc----------ccceecccccCCcCcceeEEecCC--cEEEEeCCceecccccCccccchhhcCccEE
Confidence 7899999964 445566777788777888899998 56665432 12355
Q ss_pred EEEcCCCceeeeeecc-----cceeEEEECCCCCEEEEEeCCCcE-----EEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 203 VWSLLKGRLLRNIVFP-----SVIDAIALDPAEHVFYAGSRDGSI-----YIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 203 iwd~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~dg~i-----~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
+.|..+|..+.+...+ -.+..++..++|..++.+-..|.- .+=-...+.+. ..... +..+...-...|
T Consensus 205 lld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l-~~~~~-pee~~~~~anYi 282 (366)
T COG3490 205 LLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL-EFLDL-PEEQTAAFANYI 282 (366)
T ss_pred EEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC-cccCC-CHHHHHHHHhhh
Confidence 5666677766655433 457778888888776655333210 00000111000 00000 000111223567
Q ss_pred eEEEEec-CCEEEEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 273 TCLAYST-GDLLISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 273 ~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
-+++.+. ..+++..+ ..+...+||..+|..+..-... ....++ +...-++..+.+|.+.+++..
T Consensus 283 gsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva--~~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 283 GSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVA--AAKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred hheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccce--eccCceEEecCCceEEecccc
Confidence 7888887 44554444 4556789999999887654432 122233 334456666778888877533
No 366
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.92 E-value=0.0081 Score=56.32 Aligned_cols=238 Identities=9% Similarity=0.028 Sum_probs=123.5
Q ss_pred EeeccCcccCC----CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC-----------CEEEEEcC
Q 012996 46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVA 110 (451)
Q Consensus 46 ~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~ 110 (451)
++|+|+++|.+ |.+-..+++.|+.+++.............+.|.++++.|+....+. .|+.|.+.
T Consensus 131 ~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~g 210 (414)
T PF02897_consen 131 VSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLG 210 (414)
T ss_dssp ETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETT
T ss_pred ECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECC
Confidence 89999999865 3333579999999987654433322333499999988776654332 37888876
Q ss_pred CCcce--eeeccccCC--eeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 111 SGRLL--KKWHAHYRA--VTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 111 ~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
++..- ..+...... ...+..++|+++|+..... ..+.+.++.... ........+..+...+....
T Consensus 211 t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~-------~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 211 TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG-------SPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT-------TSS-SEEEEEESSSS-EEEE
T ss_pred CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC-------CCcCCcEEEeCCCCceEEEE
Confidence 66432 344443333 5678899999997754332 346777775410 00112222232333333322
Q ss_pred EeecCCeeEEEEee---CCCcEEEEEcCCCce---e-eeeeccc--ceeEEEECCCCCEEEEE-eCCC--cEEEEEcc-C
Q 012996 183 IGYGGVSATIVSAS---EDRTCKVWSLLKGRL---L-RNIVFPS--VIDAIALDPAEHVFYAG-SRDG--SIYIAALN-A 249 (451)
Q Consensus 183 ~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~---~-~~~~~~~--~i~~~~~~~~~~~l~~~-~~dg--~i~i~d~~-~ 249 (451)
-+.++ .+++... ..+.|.-.++..... . ..+.+.. .+..+. ..+++|+.. ..++ .|+++++. .
T Consensus 284 ~~~~~--~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 284 DHHGD--RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS--LFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEETT--EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE--EETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EccCC--EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE--EECCEEEEEEEECCccEEEEEECCCC
Confidence 22333 3444332 235677777776652 2 2222333 344444 344455544 3444 68888888 3
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcC---CCcEEEEeCCCCceE
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSE---DGMVRVWDPITHNIV 303 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~---dg~i~iwd~~~~~~~ 303 (451)
. ........-.+.|..+...+ ..+.++.++ -+++.-||+.+++..
T Consensus 360 ~---------~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 360 K---------ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp E---------EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred c---------EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2 11111111233455555444 333333332 356888888887653
No 367
>PHA02713 hypothetical protein; Provisional
Probab=97.83 E-value=0.0024 Score=61.77 Aligned_cols=223 Identities=9% Similarity=0.116 Sum_probs=111.6
Q ss_pred cEEEEECCCCceeeeecCCCCe--eEEEECCCCcEEEEeccC------CCEEEEEcCCCcce--eeeccccCCeeEEEEc
Q 012996 62 SILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFS 131 (451)
Q Consensus 62 ~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~ 131 (451)
.+..||..+.........+.+. .+++. -++...++||.+ ..+..||..++.-. ..+....... +++ .
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-V 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-E
Confidence 5677888776544322211111 12222 356777777753 24778887766421 1121111111 222 2
Q ss_pred cCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-------
Q 012996 132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR------- 199 (451)
Q Consensus 132 ~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~------- 199 (451)
-+++..+.||.++ .+..||..+ ..+..+..+....... +++ ..++ .+.+.|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~---------~~W~~~~~mp~~r~~~-~~~-~~~g--~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGD---------DKWKMLPDMPIALSSY-GMC-VLDQ--YIYIIGGRTEHIDYTSV 416 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCC---------CeEEECCCCCcccccc-cEE-EECC--EEEEEeCCCcccccccc
Confidence 2577778888764 377888754 2222222221111111 111 2234 6666676542
Q ss_pred ----------------cEEEEEcCCCceee--eeecccceeEEEECCCCCEEEEEeCCC------cEEEEEccC-CCCCC
Q 012996 200 ----------------TCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGSRDG------SIYIAALNA-ESPST 254 (451)
Q Consensus 200 ----------------~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~ 254 (451)
.+..||..+.+-.. .+..+..-.+++ .-++++.++|+.++ .+..||..+ ..
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--- 492 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--- 492 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCC---
Confidence 47778887764332 221111111122 22566667776542 366788776 33
Q ss_pred CCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC--cEEEEeCCCCceEEEeecC
Q 012996 255 SSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG--MVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 255 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~ 309 (451)
|..+..+.........+.+ .+.+.++||.|| .+..||+.+.+-...-..|
T Consensus 493 ----W~~~~~m~~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 493 ----WELITTTESRLSALHTILH-DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred ----eeEccccCcccccceeEEE-CCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 3444444433333333333 378888999888 6778887776544333333
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.82 E-value=0.0041 Score=60.07 Aligned_cols=225 Identities=14% Similarity=0.219 Sum_probs=120.4
Q ss_pred CCCCcEEEEeccCC------CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCC-C-----cEEEeeCcch
Q 012996 89 NSHGTYIAGGGQSG------DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-G-----CVRIWSLLTV 154 (451)
Q Consensus 89 ~~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~vwd~~~~ 154 (451)
+..+.++++|+.++ .+..||..++.-.. .+.. ...-.++++. ++...++||.| | .+-.||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~- 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRT- 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCC-
Confidence 33466778887774 47888887774322 2222 2223344444 45778889888 3 466777754
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc-----EEEEEcCCCceeeeeecccceeEEEECC-
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT-----CKVWSLLKGRLLRNIVFPSVIDAIALDP- 228 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~i~~~~~~~- 228 (451)
..+..+.......... +++ .-++ .+.++|+.||. +-.||..+.+--..-.........+...
T Consensus 359 --------~~W~~~a~M~~~R~~~-~v~-~l~g--~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~ 426 (571)
T KOG4441|consen 359 --------NQWTPVAPMNTKRSDF-GVA-VLDG--KLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL 426 (571)
T ss_pred --------CceeccCCccCccccc-eeE-EECC--EEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE
Confidence 2222222222211111 111 1233 68888888874 7778877655433222222222222222
Q ss_pred CCCEEEEEeCCC------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc-----EEEEeC
Q 012996 229 AEHVFYAGSRDG------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM-----VRVWDP 297 (451)
Q Consensus 229 ~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~-----i~iwd~ 297 (451)
+|.+.++|+.++ .+..||..+.. |..+..+..-..... ++.-.+.+.+.||.|+. |..||.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~-------W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNT-------WTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCc-------eeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcC
Confidence 677777787555 46778877764 333333332222222 33333778888887773 778888
Q ss_pred CCCceEEEeecCCCCeeEEEEE-ecCceeeeccCCCCcccc
Q 012996 298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSNPHTSS 337 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s~d~~i~iw 337 (451)
.+.+-... ..-..+...+... -++...++|+.||.-++-
T Consensus 499 ~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 499 ETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDGNNNLN 538 (571)
T ss_pred CCCceeEc-ccCccccccccEEEECCEEEEEecccCccccc
Confidence 76554333 2122233333333 356677888877764443
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.80 E-value=4.6e-05 Score=61.30 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=96.6
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (451)
..+...+.+|.|+-++++..+....-. +... .....-+..+++|+.+|.|++|....... .......
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s 99 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCS 99 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch--------HHHhhhc
Confidence 345566778888888887543322111 1111 22223567899999999999998874321 1111111
Q ss_pred CCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeec--cCCCCccccccCCC
Q 012996 268 HSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG--SFSNPHTSSRRHGS 342 (451)
Q Consensus 268 ~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~--s~d~~i~iw~~~~~ 342 (451)
-...|-++.-.- +.+..+++.||.|+.|++.-.+.+.....|. .++..+..+..+++++.+ |.|..++.|++..-
T Consensus 100 ~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 100 GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 122333322221 4588899999999999999999998888888 788888889889999998 99999999998743
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00077 Score=66.25 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=74.0
Q ss_pred cCcccCCCCCCccEEEEECCCCcee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC 127 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (451)
+..++.+++. |.+...|+...-.. .......+|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 99 ~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 3445555555 88888887764331 22234679999999999999999999999999999999999988877776666
Q ss_pred EEE---ccCCcEEEEeeCCCcEEEeeC
Q 012996 128 LVF---SEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 128 ~~~---~~~~~~l~s~~~dg~i~vwd~ 151 (451)
+-+ ..++..++++..-|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 544 445666778777665 6665
No 371
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00015 Score=66.82 Aligned_cols=95 Identities=15% Similarity=0.253 Sum_probs=76.4
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCee-EEEECCCCcEEEEeccCCCEEEEEcCCCc
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIK-PIAANSHGTYIAGGGQSGDIYMWEVASGR 113 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 113 (451)
-+..+..+. |+|.-..+|.+..+ |.|.+..++-.++.....|..+++ +++|.|||+.||+|-.||+|++.|+.++.
T Consensus 19 l~~~i~~~e--wnP~~dLiA~~t~~-gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIE--WNPKMDLIATRTEK-GELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEE--EcCccchhheeccC-CcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 334566666 99999999999998 999999988444444444777887 99999999999999999999999999998
Q ss_pred ceeee-ccccCCeeEEEEcc
Q 012996 114 LLKKW-HAHYRAVTCLVFSE 132 (451)
Q Consensus 114 ~~~~~-~~~~~~v~~~~~~~ 132 (451)
.+..+ ......|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 77663 23456788888863
No 372
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00016 Score=66.68 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=66.5
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCee-EEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVT-CLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
...+.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|+.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 4568899999999999999999999999987 777888887888887 999999999999999999999999966
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0027 Score=45.44 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=68.4
Q ss_pred eeEEEEcc---CC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 125 VTCLVFSE---DG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 125 v~~~~~~~---~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
|+++++.. || +.|++|+.|..|++|+-.. .+..+. -...|++++-... ..++.+-.+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------------~~~Ei~-e~~~v~~L~~~~~---~~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------------IVAEIT-ETDKVTSLCSLGG---GRFAYALANGT 64 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------------EEEEEe-cccceEEEEEcCC---CEEEEEecCCE
Confidence 56676655 22 6799999999999998633 344444 3456677766555 47999999999
Q ss_pred EEEEEcCCCceeeeeecccceeEEEECC-C--C-CEEEEEeCCCcEE
Q 012996 201 CKVWSLLKGRLLRNIVFPSVIDAIALDP-A--E-HVFYAGSRDGSIY 243 (451)
Q Consensus 201 i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~dg~i~ 243 (451)
|-+|+- ...+..+.....+.++++.. + | .-|++|-.+|.|-
T Consensus 65 VGvY~~--~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDR--SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeC--cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999984 34445555555566666544 2 2 3688888888774
No 374
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.74 E-value=0.0051 Score=59.44 Aligned_cols=225 Identities=16% Similarity=0.179 Sum_probs=120.9
Q ss_pred cCcccCCCCCC-----ccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccC-C-----CEEEEEcCCCccee
Q 012996 50 SQLREQPSASS-----GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQS-G-----DIYMWEVASGRLLK 116 (451)
Q Consensus 50 ~~~l~~~~~d~-----g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~~ 116 (451)
+..+++||... ..+..||..++....... ....-.+++.. ++...++||.| | .+..||...++-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 44445555542 578888888775432221 22233444444 46778888888 3 47788877665222
Q ss_pred --eeccccCCeeEEEEccCCcEEEEeeCCCc-----EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE-eecCC
Q 012996 117 --KWHAHYRAVTCLVFSEDGSFLISGSEDGC-----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI-GYGGV 188 (451)
Q Consensus 117 --~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~-~~~~~ 188 (451)
.+...........+ +|...++||.||. +-.||..+ ..+..+..... ...+... ..++
T Consensus 364 ~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~---------~~W~~va~m~~---~r~~~gv~~~~g- 428 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVT---------NKWTPVAPMLT---RRSGHGVAVLGG- 428 (571)
T ss_pred cCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCC---------CcccccCCCCc---ceeeeEEEEECC-
Confidence 22222222212222 5888889999875 66677654 33333332222 2222222 2344
Q ss_pred eeEEEEeeCCC------cEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCC
Q 012996 189 SATIVSASEDR------TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTS 255 (451)
Q Consensus 189 ~~~l~s~~~d~------~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~ 255 (451)
.+.++|+.++ .+..||..++.-...-. ....-..++ .-++.+.++|+.|+ .|..||..+..
T Consensus 429 -~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~---- 502 (571)
T KOG4441|consen 429 -KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ---- 502 (571)
T ss_pred -EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCc----
Confidence 6777777554 56788888765433222 111111222 22677778888776 36778877754
Q ss_pred CCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC-----cEEEEeCCCC
Q 012996 256 SYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG-----MVRVWDPITH 300 (451)
Q Consensus 256 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~ 300 (451)
|..+..+......+....+. +...++|+.|| +|..||..+.
T Consensus 503 ---W~~v~~m~~~rs~~g~~~~~-~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 503 ---WTMVAPMTSPRSAVGVVVLG-GKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ---eeEcccCccccccccEEEEC-CEEEEEecccCccccceeEEcCCCCC
Confidence 34443343333333333333 67788888776 3666776554
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.72 E-value=0.042 Score=51.53 Aligned_cols=223 Identities=14% Similarity=0.164 Sum_probs=112.6
Q ss_pred eeEEEECCCCcEEEEe-ccCCC----EEEEEcCCCcceeee-ccccCCeeEEEEccCCcEEEEeeCCC-----------c
Q 012996 83 IKPIAANSHGTYIAGG-GQSGD----IYMWEVASGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDG-----------C 145 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~-~~dg~----i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg-----------~ 145 (451)
+....++|+|+++|.+ +..|. ++++|+.+++.+... ... ....+.|.++++.|+....+. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467889999999865 33343 999999999766432 211 123499999988776554333 3
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE-eeCC---CcEEEEEcCCC----ceeeee-e
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASED---RTCKVWSLLKG----RLLRNI-V 216 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d---~~i~iwd~~~~----~~~~~~-~ 216 (451)
|..|.+.+... ....+..-..+......+..+.++ ++++. .... ..+.+.|+..+ .....+ .
T Consensus 204 v~~~~~gt~~~-------~d~lvfe~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 204 VYRHKLGTPQS-------EDELVFEEPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp EEEEETTS-GG-------G-EEEEC-TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred EEEEECCCChH-------hCeeEEeecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 77888755211 111222222222224567777777 55553 3322 34788888764 222222 2
Q ss_pred cccce-eEEEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEecCCEEEE-EcCC
Q 012996 217 FPSVI-DAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYSTGDLLIS-GSED 289 (451)
Q Consensus 217 ~~~~i-~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~l~s-~~~d 289 (451)
....+ ..+... .+.+++... ..+.|...++...... .....+..|.. .+..+... +++|+. .-.+
T Consensus 275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~ 346 (414)
T PF02897_consen 275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTVLIPEDEDVSLEDVSLF-KDYLVLSYREN 346 (414)
T ss_dssp SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEEEE--SSSEEEEEEEEE-TTEEEEEEEET
T ss_pred CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeEEcCCCCceeEEEEEEE-CCEEEEEEEEC
Confidence 22233 333333 333333332 2346666777665310 01114444554 45555444 444444 4445
Q ss_pred C--cEEEEeCCCCceEEEeecC-CCCeeEEEEEecCce
Q 012996 290 G--MVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLY 324 (451)
Q Consensus 290 g--~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~ 324 (451)
+ .|+++++..+.....+... .+.|..+...+++..
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SE
T ss_pred CccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCE
Confidence 4 4889998844555554432 344555554454443
No 376
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.71 E-value=0.0001 Score=41.95 Aligned_cols=38 Identities=42% Similarity=0.820 Sum_probs=33.6
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
+....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999989999999999999996
No 377
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.70 E-value=0.0041 Score=56.75 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=57.4
Q ss_pred eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEEEEec-----------------C
Q 012996 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRR-----------------P 322 (451)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~-----------------~ 322 (451)
...+.+....+.+++.+| +.+.++...=|.|.++|+.++..++.+++..+.- .-+..... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 345556667789999999 8888888888999999999999998888765421 11111111 1
Q ss_pred cee-eeccCCCCccccccCCCCC
Q 012996 323 LYL-NLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 323 ~~l-~~~s~d~~i~iw~~~~~~~ 344 (451)
.+| +-+..-|.+-||..+.+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~R 402 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPR 402 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCE
Confidence 223 4456678888898875543
No 378
>PHA02713 hypothetical protein; Provisional
Probab=97.66 E-value=0.015 Score=56.31 Aligned_cols=215 Identities=7% Similarity=0.078 Sum_probs=103.6
Q ss_pred CEEEEEcCCCcce--eeeccccCCeeEEEEccCCcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 103 DIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 103 ~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
.+..||..+++-. ..+...... .+++. -++..++.||.+ ..+..||..+. ....+......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n---------~W~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENK---------IHVELPPMIKN 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCC---------eEeeCCCCcch
Confidence 4778888766422 222211111 12222 256777777754 23667777541 11111111111
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeeecccce--eEEEECCCCCEEEEEeCCC-------
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIVFPSVI--DAIALDPAEHVFYAGSRDG------- 240 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg------- 240 (451)
... .+++ ..++ .+.+.|+.++ .+..||..+.+-...-..+.+. .+++ .-++.+.+.|+.++
T Consensus 342 R~~-~~~~-~~~g--~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 342 RCR-FSLA-VIDD--TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hhc-eeEE-EECC--EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccc
Confidence 111 1222 2344 6777777654 4788998876433221212111 1111 12577777777543
Q ss_pred ----------------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC------cEEEEeCC
Q 012996 241 ----------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG------MVRVWDPI 298 (451)
Q Consensus 241 ----------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg------~i~iwd~~ 298 (451)
.+..||..+.. |..+..+....... +++...+.+.+.||.++ .+..||..
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~-------W~~v~~m~~~r~~~-~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNI-------WETLPNFWTGTIRP-GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccceEEEECCCCCe-------EeecCCCCcccccC-cEEEECCEEEEEeCCCCCCccceeEEEecCC
Confidence 36667766643 23232222211111 22222366667776542 46789988
Q ss_pred C-C--ceEEEeecCCCCeeEEEEEecCceeeeccCCC--CccccccCCCC
Q 012996 299 T-H--NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN--PHTSSRRHGSQ 343 (451)
Q Consensus 299 ~-~--~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~--~i~iw~~~~~~ 343 (451)
+ . ..+..+........ ...-+|+..++|+.|+ .+-.||..+.+
T Consensus 489 ~~~~W~~~~~m~~~r~~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 489 TYNGWELITTTESRLSALH--TILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCCCeeEccccCcccccce--eEEECCEEEEEeeecceeehhhcCccccc
Confidence 6 3 33333333222222 2223778889999888 55566655443
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.65 E-value=8.3e-05 Score=42.37 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 300 HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
++++..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677888899999999999999999999999999996
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.62 E-value=0.084 Score=52.25 Aligned_cols=310 Identities=15% Similarity=0.114 Sum_probs=169.9
Q ss_pred EEeecCCCCCCeE-EEECccCceeeee-ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--e---
Q 012996 4 LIASSSVADTGIG-CWDLESGAEQLRY-KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--K--- 76 (451)
Q Consensus 4 ~l~s~~~~dg~i~-vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~--- 76 (451)
++|.|. .+..+. +--+.....+... .....-++.|.... +-.+..+|.++..| |.+.-+.++...... .
T Consensus 550 ~~aVG~-Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~--~e~d~~yLlvalgd-G~l~~fv~d~~tg~lsd~Kk~ 625 (1096)
T KOG1897|consen 550 LLAVGL-WSDISMILTFLPDLILITHEQLSGEIIPRSILLTT--FEGDIHYLLVALGD-GALLYFVLDINTGQLSDRKKV 625 (1096)
T ss_pred EEEEEe-ecceEEEEEECCCcceeeeeccCCCccchheeeEE--eeccceEEEEEcCC-ceEEEEEEEcccceEcccccc
Confidence 455555 333332 2223333333222 33445667777777 77778899998888 998888766443322 1
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE-EEcc--CCcEEEEeeCCCcEEEeeCcc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL-VFSE--DGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~~~--~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.....|+.--.|+..++.-+-+..|.-..+|.- ++++..+--. -..+..+ .|+. -...++++.. +.+++..+..
T Consensus 626 ~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls-~kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~ 702 (1096)
T KOG1897|consen 626 TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLS-LKEVNHMCPFNSDAYPDSLASANG-GALTIGTIDE 702 (1096)
T ss_pred ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccc-hHHhhhhcccccccCCceEEEecC-CceEEEEecc
Confidence 223567777777665444333455666667663 4444332111 1111111 2222 1234555544 4677776644
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-----------C---CcEEEEEcCCCceeeeeec--
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----------D---RTCKVWSLLKGRLLRNIVF-- 217 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----------d---~~i~iwd~~~~~~~~~~~~-- 217 (451)
.. ...+++..-+ .....+++.+.. ..+.+.+. . ..++++|-.+.+.+.....
T Consensus 703 iq---------kl~irtvpl~-~~prrI~~q~~s--l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~ 770 (1096)
T KOG1897|consen 703 IQ---------KLHIRTVPLG-ESPRRICYQESS--LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER 770 (1096)
T ss_pred hh---------hcceeeecCC-CChhheEecccc--eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc
Confidence 21 1122222211 122333443321 12222111 1 2477788777766655542
Q ss_pred c---cceeEEEECCC-CCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996 218 P---SVIDAIALDPA-EHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (451)
Q Consensus 218 ~---~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 283 (451)
. ..+.++.|..+ +.++++|+. .|+|.+|.+..... .+.+.... -.+.+.++..-.|+++
T Consensus 771 ~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~------L~~v~e~~-v~Gav~aL~~fngkll 843 (1096)
T KOG1897|consen 771 NETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS------LELVAETV-VKGAVYALVEFNGKLL 843 (1096)
T ss_pred cceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc------eeeeeeee-eccceeehhhhCCeEE
Confidence 2 23455557776 777888763 47788887766211 12222111 2345555444336555
Q ss_pred EEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 284 ISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 284 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
|. -+..|++|+..+.+.++.-..+..++..+...-.|..++.|..-+.+.+-..+.
T Consensus 844 A~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 844 AG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred Ee--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 54 466899999999988888778889999999999999999998777765554443
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00015 Score=58.38 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=39.8
Q ss_pred eEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeE-EEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 190 ATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
..+++|+.+|.|++|...-. .....+. ....|.+ +.--.++.+.++++.+|.|+.|++...
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC
Confidence 67899999999999987621 1111111 1122222 222235568899999999999998765
No 382
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.042 Score=52.62 Aligned_cols=183 Identities=19% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
-.|+||+. +|.++..+.-..+.+-.+.|+.+. .|++...+|++.+|++........ -..+......|..+
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~--------svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESN--------SVGFESQMSDIVEC 133 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhccc--------ccccccccCceeEE
Confidence 45888985 677776665445588899999765 577778999999999843211110 00112223344445
Q ss_pred EEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-c-cce--eEEEECCCCC---EEEEEe-CCCcEEEEEccCCCCC
Q 012996 182 VIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-P-SVI--DAIALDPAEH---VFYAGS-RDGSIYIAALNAESPS 253 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~i--~~~~~~~~~~---~l~~~~-~dg~i~i~d~~~~~~~ 253 (451)
.+..+| ++.-..+|.+.+-.-........+.. + ... .|-...+++. .++-.. ..+ ..++......
T Consensus 134 ~~f~~G----Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-- 206 (829)
T KOG2280|consen 134 RFFHNG----VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-- 206 (829)
T ss_pred EEecCc----eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc--
Confidence 554444 33334445554433222111222210 1 111 2222222211 111100 001 0111111111
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.....+......+..+..|| .++|+--..+|.|.+-+....+++.++.
T Consensus 207 ------~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 207 ------VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ------ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 01112222235677889999 9999999999999999988877777766
No 383
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.057 Score=45.77 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=150.9
Q ss_pred cCcccCCCCCCccEEEEECCCCceeeeec--CC-CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccC
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVEVKSL--PA-EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYR 123 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~ 123 (451)
+++...+-.+ .-+++.|+.++..+.... .. +--.++..+ |++..++..+.-+.+.|+.+.. +...+.....
T Consensus 96 e~yvyvad~s-sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 96 EEYVYVADWS-SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred ccEEEEEcCC-CceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 4444444444 779999998776554432 22 344555554 8888887766668888987653 3334444445
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
.-..++.| |++-..+..|+-+.+-|+... ....++.. ......+.++..+++ +....-.+.-+.+
T Consensus 173 d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp--------~sPvli~~-~n~g~g~~sv~vsdn----r~y~vvy~egvli 237 (370)
T COG5276 173 DTHDVAIS--GNYAYVAWRDGGLTIVDVSNP--------HSPVLIGS-YNTGPGTYSVSVSDN----RAYLVVYDEGVLI 237 (370)
T ss_pred CceeEEEe--cCeEEEEEeCCCeEEEEccCC--------CCCeEEEE-EecCCceEEEEecCC----eeEEEEcccceEE
Confidence 55677777 777778888999999999652 11222222 222235666655554 3333334445778
Q ss_pred EEcCCCceeeeee--cccceeEE-EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC
Q 012996 204 WSLLKGRLLRNIV--FPSVIDAI-ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG 280 (451)
Q Consensus 204 wd~~~~~~~~~~~--~~~~i~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 280 (451)
-|....+....+. ....+.++ .+.-.+++.++...+.-+.+.|..+.... .....+......-..+..+ +
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~sp------fl~ss~~t~g~~a~gi~ay-~ 310 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSP------FLSSSLDTAGYQAAGIRAY-G 310 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCC------chhccccCCCccccceEEe-c
Confidence 8877666444443 22222222 23336677777777777777787765321 1111111111122333333 4
Q ss_pred CEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 281 DLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 281 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.++..+..+ +..+-+....+......+....+.+...+-+.+.+.+...++.+.+|+..
T Consensus 311 ~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 311 NYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 555555444 44555655444444444444445566666667788888889999888754
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.063 Score=45.66 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=112.7
Q ss_pred cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEEeecCCeeEEEEeeC
Q 012996 120 AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVSATIVSASE 197 (451)
Q Consensus 120 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~~l~s~~~ 197 (451)
+-...+.++.|+|+.+.|++......-.|+=-.+ ...+.+. .+ -.....|.+..++ .+.++--.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-----------GdlirtiPL~g-~~DpE~Ieyig~n--~fvi~dER 148 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-----------GDLIRTIPLTG-FSDPETIEYIGGN--QFVIVDER 148 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecC-----------CceEEEecccc-cCChhHeEEecCC--EEEEEehh
Confidence 4445599999999999888887776665553322 2222222 22 1222345665555 77777778
Q ss_pred CCcEEEEEcCCCceee-----eee-----c-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC-CCceeeeee
Q 012996 198 DRTCKVWSLLKGRLLR-----NIV-----F-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-YGMHIIGSL 265 (451)
Q Consensus 198 d~~i~iwd~~~~~~~~-----~~~-----~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~ 265 (451)
++.+.++.+....... .+. + +.....++|+|....|+++-...-+.||........... ....+....
T Consensus 149 ~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~ 228 (316)
T COG3204 149 DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADR 228 (316)
T ss_pred cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCccccc
Confidence 8888888776543221 111 2 456778999999999999888887777776643211000 000000000
Q ss_pred ccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC---------CeeEEEEEecCc
Q 012996 266 SDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPL 323 (451)
Q Consensus 266 ~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~ 323 (451)
.-.-..|.++.|++ +.+|+-+.+++.+.-.|. +|..+..+..+.+ .--.++..++|.
T Consensus 229 ~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 229 DLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 00124678888988 778888888888888884 4555655543322 234566666654
No 385
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.40 E-value=0.11 Score=47.90 Aligned_cols=235 Identities=11% Similarity=0.065 Sum_probs=121.6
Q ss_pred EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEec-ceEeec--cCcccCCCCCCccEEEEECCCC--c
Q 012996 3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVG-QRFLAS--SQLREQPSASSGSILYWSWSKP--Q 72 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~l~~~~~d~g~i~vw~~~~~--~ 72 (451)
..|++|+ ..|.++||+...+. .+.+.+ -..+|..+. ++|.+. ...||+-.- ..+.||.+... .
T Consensus 38 d~IivGS-~~G~LrIy~P~~~~~~~~~lllE~~----l~~PILqv~~G~F~s~~~~~~LaVLhP--~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 38 DKIIVGS-YSGILRIYDPSGNEFQPEDLLLETQ----LKDPILQVECGKFVSGSEDLQLAVLHP--RKLSVYSVSLVDGT 110 (418)
T ss_pred cEEEEec-cccEEEEEccCCCCCCCccEEEEEe----cCCcEEEEEeccccCCCCcceEEEecC--CEEEEEEEEecCCC
Confidence 3678899 99999999985433 121211 123344433 235433 233444333 78888887311 1
Q ss_pred ------ee--eeecC--CCCeeEEEECC----C-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 73 ------VE--VKSLP--AEPIKPIAANS----H-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 73 ------~~--~~~~~--~~~v~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
.. ....| ......+++-| . ..++++=+.||.+.+|+-+.-.....+.. .--...+.|.+....|
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 11 11112 23333444322 2 35778889999999999655443344433 2233457888888889
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhc------------ccccceecccCCcCceeEEEEeecC-CeeEEEEeeCCCcEEEE
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQR------------ASHLYLHSFTGHTLRITDIVIGYGG-VSATIVSASEDRTCKVW 204 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~l~s~~~d~~i~iw 204 (451)
++++.+..+..|............. ....+.-++. -...+.++...... ....++.-+ ...+.+.
T Consensus 190 vt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l 267 (418)
T PF14727_consen 190 VTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCL 267 (418)
T ss_pred EEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEE
Confidence 9999999999998744322111000 0000111111 12233333332211 112333332 3456666
Q ss_pred EcCCCceeeeeecccceeEEEE-------CCC-CCEEEEEeCCCcEEEEEcc
Q 012996 205 SLLKGRLLRNIVFPSVIDAIAL-------DPA-EHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 205 d~~~~~~~~~~~~~~~i~~~~~-------~~~-~~~l~~~~~dg~i~i~d~~ 248 (451)
+- +|........+....+++. .|. +..+++++.++.+.+|.=.
T Consensus 268 ~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~ 318 (418)
T PF14727_consen 268 KD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT 318 (418)
T ss_pred cC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC
Confidence 64 5665555555544444431 122 1258889999999998643
No 386
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.37 E-value=0.071 Score=45.19 Aligned_cols=183 Identities=16% Similarity=0.108 Sum_probs=113.2
Q ss_pred CeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 124 AVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
....+.|..++.++-+.+.-| .|+.+|+.++.. .....+. ...--.+++...+ .+....-.++..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~---------~~~~~l~-~~~FgEGit~~~d---~l~qLTWk~~~~ 112 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKV---------LQSVPLP-PRYFGEGITILGD---KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSE---------EEEEE-T-TT--EEEEEEETT---EEEEEESSSSEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcE---------EEEEECC-ccccceeEEEECC---EEEEEEecCCeE
Confidence 345688877888888888776 688899866321 1111111 1222234444433 566666788999
Q ss_pred EEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC---cceeEEEEe
Q 012996 202 KVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS---KAVTCLAYS 278 (451)
Q Consensus 202 ~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 278 (451)
.+||..+.+.+.++..+..-..++ .++..|+.+.....++++|..+.... ..+ ...... ..++-+.|-
T Consensus 113 f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~------~~i-~V~~~g~pv~~LNELE~i 183 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV------RTI-QVTDNGRPVSNLNELEYI 183 (264)
T ss_dssp EEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE------EEE-E-EETTEE---EEEEEEE
T ss_pred EEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceE------EEE-EEEECCEECCCcEeEEEE
Confidence 999999999999999888778888 46778888888889999998764311 111 111222 245556776
Q ss_pred cCCEEEEEcCCCcEEEEeCCCCceEEEeec------------C---CCCeeEEEEEecCcee-eec
Q 012996 279 TGDLLISGSEDGMVRVWDPITHNIVRMFRL------------A---KGPVNNILVVRRPLYL-NLG 328 (451)
Q Consensus 279 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------~---~~~v~~l~~s~~~~~l-~~~ 328 (451)
.|...|=.=....|...|..+|+.+..+.. + ..-.+.|++.|....| +||
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 566666666677788899999998887641 0 2358999999866555 554
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.00086 Score=65.94 Aligned_cols=100 Identities=20% Similarity=0.333 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.+..++.|++.|.+...|+...- .+...-..-.++|++++|+. |..++.|-.+|.|.+||...++.++.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL--------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL--------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc--------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 56678999999999999987742 22223333468999999999 9999999999999999999999999999
Q ss_pred cCCCCeeEEEEE---ecCceeeeccCCCCccccc
Q 012996 308 LAKGPVNNILVV---RRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 308 ~~~~~v~~l~~s---~~~~~l~~~s~d~~i~iw~ 338 (451)
.|..|.+++-+. .++..+.++..-|. +|+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 888877776654 45556677665564 454
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.29 E-value=0.021 Score=55.41 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=101.5
Q ss_pred ceEEecceEeeccCcccCCCC-----CCc--cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---------
Q 012996 38 GLACVGQRFLASSQLREQPSA-----SSG--SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------- 101 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~-----d~g--~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 101 (451)
.+...+ ++|+|+.+|.... +++ .|.+++......... .......-.|+|+|..+++....
T Consensus 351 ~vsspa--iSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt--~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAA--LSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL--EGHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred Ccccce--ECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee--cCCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 445555 8999998877652 123 455555433332222 23348888999998877765422
Q ss_pred ---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCc
Q 012996 102 ---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLR 177 (451)
Q Consensus 102 ---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 177 (451)
+.+.+.++..++... ...+.|..+.|+|||..++... +|.|.+--+....... ........+ ..-...
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~----~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ----YALTNPREVGPGLGDT 498 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc----eeecccEEeecccCCc
Confidence 233333444433322 2356799999999999888765 4677773332210000 000001112 222333
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
+.++.|..++ . |+++..++...+|.+.- |.....+. ....+.+++-++ ..+++...+|.+.+
T Consensus 499 ~~~l~W~~~~--~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 499 AVSLDWRTGD--S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred cccceEecCC--E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 5778898887 5 44555544444454331 22211112 245566676665 35666677774444
No 389
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.28 E-value=0.047 Score=44.62 Aligned_cols=196 Identities=12% Similarity=0.124 Sum_probs=109.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCC--cEEEEeccC-CCEEEEEcC--CCcceeeec-----cccCCeeEEEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHG--TYIAGGGQS-GDIYMWEVA--SGRLLKKWH-----AHYRAVTCLVF 130 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d-g~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~ 130 (451)
|.|+-||..+++.........++.++.+--.+ ..+++++.. -.|.=||.. .-....++. ......+.-..
T Consensus 37 g~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkv 116 (310)
T KOG4499|consen 37 GEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKV 116 (310)
T ss_pred CceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCcc
Confidence 77777998877665444444444555543222 223333322 224446632 222223321 11345567778
Q ss_pred ccCCcEEEEeeCC---------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 131 SEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 131 ~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
+|+|++++-.-.| |.++.|-... .+..+...-+--+.++|+.+.. .+.++-+.+-.|
T Consensus 117 dP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------------~v~~i~~~v~IsNgl~Wd~d~K-~fY~iDsln~~V 182 (310)
T KOG4499|consen 117 DPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------------QVELIWNCVGISNGLAWDSDAK-KFYYIDSLNYEV 182 (310)
T ss_pred CCCCceeeeeeccccccccccccEEEEeccCC-------------CceeeehhccCCccccccccCc-EEEEEccCceEE
Confidence 8999985432222 3344443311 1111111222335677876553 555667777788
Q ss_pred EEEE--cCCCce-----eeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 202 KVWS--LLKGRL-----LRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 202 ~iwd--~~~~~~-----~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
.-|| ..+|.. +..+.. +-....++++.+|.+.++.-..++|...|..++ +.+.++.-..
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt 253 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPT 253 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCC
Confidence 7787 555532 222221 112344666778888888888999999999998 4566666678
Q ss_pred cceeEEEEec
Q 012996 270 KAVTCLAYST 279 (451)
Q Consensus 270 ~~v~~~~~~~ 279 (451)
..|++++|--
T Consensus 254 ~qitsccFgG 263 (310)
T KOG4499|consen 254 PQITSCCFGG 263 (310)
T ss_pred CceEEEEecC
Confidence 8999999975
No 390
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0059 Score=55.64 Aligned_cols=143 Identities=13% Similarity=0.210 Sum_probs=95.2
Q ss_pred CCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcE-------EEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 91 HGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSF-------LISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 91 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
+.++| ..+.....++-.|++.|+.+..++-|.. |+-+.+.|+.+. -+.|-.|..|.-||.+-.
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~-------- 414 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQ-------- 414 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccccc--------
Confidence 44444 4555556788899999999999987776 777788876432 345667889999998631
Q ss_pred ccccceecccCC----cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECCCCCEEEEE
Q 012996 163 ASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 163 ~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (451)
....+..-.+| ...-.|++-..+ .++++|+.+|.|++||- .+.. ...++ ...+|..+..+.+|+++++.
T Consensus 415 -~~~kl~~~q~kqy~~k~nFsc~aTT~s---G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 415 -GKNKLAVVQSKQYSTKNNFSCFATTES---GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred -CcceeeeeeccccccccccceeeecCC---ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe
Confidence 11111111222 223344444444 49999999999999996 4433 33344 67899999999999998876
Q ss_pred eCCCcEEEEEcc
Q 012996 237 SRDGSIYIAALN 248 (451)
Q Consensus 237 ~~dg~i~i~d~~ 248 (451)
+. ..+.+.++.
T Consensus 490 c~-tyLlLi~t~ 500 (644)
T KOG2395|consen 490 CK-TYLLLIDTL 500 (644)
T ss_pred cc-cEEEEEEEe
Confidence 64 455555553
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.21 E-value=0.23 Score=47.91 Aligned_cols=150 Identities=9% Similarity=0.088 Sum_probs=88.6
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeec
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~ 78 (451)
.++.++ .|+.|.-.|..+|+.+......... ...+.+.. ...++..++..+. .+|.|.-+|.++++......
T Consensus 122 ~v~v~t-~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP--~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 122 KVFFGT-LDARLVALDAKTGKVVWSKKNGDYKAGYTITAAP--LVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEEEEc-CCCEEEEEECCCCCEEeecccccccccccccCCc--EEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 355666 7899999999999998776532111 11122222 2233443332221 13889999998888765532
Q ss_pred C--CC------------------------------Ce-eEEEECCCCcEEEEeccC-----C-----------CEEEEEc
Q 012996 79 P--AE------------------------------PI-KPIAANSHGTYIAGGGQS-----G-----------DIYMWEV 109 (451)
Q Consensus 79 ~--~~------------------------------~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~ 109 (451)
. .. .+ ..+++.|...++..+..+ + .|.-.|+
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~ 278 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP 278 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence 1 10 11 133566666666655422 2 5777788
Q ss_pred CCCcceeeeccccCCe---------eEEEEccCCc---EEEEeeCCCcEEEeeCcchhh
Q 012996 110 ASGRLLKKWHAHYRAV---------TCLVFSEDGS---FLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 110 ~~~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~ 156 (451)
++|+....++.....+ .-+....+|+ .++.+..+|.+.+.|-.++..
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 9998887765422211 1222324665 778999999999999988654
No 392
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.14 E-value=0.049 Score=52.88 Aligned_cols=188 Identities=13% Similarity=0.109 Sum_probs=99.8
Q ss_pred CCeeEEEEccCCcEEEEee------CCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 123 RAVTCLVFSEDGSFLISGS------EDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~------~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
..+...+++|+|+.++... .|+. |.+++... ....+ ..+. ..+.-.|++++ ..+++
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------~~~~l--t~g~--~~t~PsWspDG--~~lw~ 413 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------VAVQV--LEGH--SLTRPSWSLDA--DAVWV 413 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------cceee--ecCC--CCCCceECCCC--CceEE
Confidence 4678899999999887655 2443 44444311 11111 1222 25666788876 45554
Q ss_pred eeC------------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEc---cCCCCCCCCCCc
Q 012996 195 ASE------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAAL---NAESPSTSSYGM 259 (451)
Q Consensus 195 ~~~------------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~ 259 (451)
... .+.+.+.++..+.... .....|..+.|+|||..++... +|.|++--+ ..+. ....
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~-- 486 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALT-- 486 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeec--
Confidence 432 2334444554444332 3456799999999999988766 477777332 2221 0000
Q ss_pred eeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC-CceEEEeec--CCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 260 HIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT-HNIVRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
.+.....+-...+.++.|.++..|+++..++.-.+|.+.- |.....+.. ...++..++-++. .+..+..+|.+.
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 1111112233446889999944455666555555555432 222222222 2457777777763 344444455433
No 393
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.14 E-value=0.18 Score=45.30 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=108.3
Q ss_pred EECCCCcEEEEe-ccCC--CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 87 AANSHGTYIAGG-GQSG--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 87 ~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
+|.++|+.|+.+ ..+| .+++.|+.+++..+.-.+.........++|+++.++-......|.-.|+.+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-------- 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-------- 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT----------
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc--------
Confidence 467888665544 4454 47778888887665544332333356677888887665555688888887632
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEee----------------------CCCcEEEEEcCCCceeeeeecccce
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS----------------------EDRTCKVWSLLKGRLLRNIVFPSVI 221 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~----------------------~d~~i~iwd~~~~~~~~~~~~~~~i 221 (451)
...+. ......+-...|..+.++..++-.- ....|.-.|+.+|+....+.....+
T Consensus 114 -~~~vy--~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 114 -ERVVY--EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp -EEEEE--E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred -EEEEE--ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence 11222 2233334334554443334433211 1235666788888877777777788
Q ss_pred eEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-----cCCC
Q 012996 222 DAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-----SEDG 290 (451)
Q Consensus 222 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-----~~dg 290 (451)
..+.|+|....+++=|.+| .-++|-++...... .++..-. ....+..=.|.| |..|.-- +.+.
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~-----~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNV-----KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcc-----eeeecCC-CCcccccccccCCCCEEEEEeecCCCCce
Confidence 8999999665555544333 23566665433111 2221111 123344455677 5544332 2344
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
.|.-+|+.+++....... .+...+..++||.+++-=+.|.
T Consensus 265 ~i~~~d~~t~~~~~~~~~--p~~~H~~ss~Dg~L~vGDG~d~ 304 (386)
T PF14583_consen 265 WIAGYDPDTGERRRLMEM--PWCSHFMSSPDGKLFVGDGGDA 304 (386)
T ss_dssp EEEEE-TTT--EEEEEEE---SEEEEEE-TTSSEEEEEE---
T ss_pred EEEeeCCCCCCceEEEeC--CceeeeEEcCCCCEEEecCCCC
Confidence 577788888765433332 2455677778998887644443
No 394
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.10 E-value=0.14 Score=43.44 Aligned_cols=180 Identities=13% Similarity=0.088 Sum_probs=104.6
Q ss_pred EeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCe--eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc
Q 012996 46 FLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY 122 (451)
Q Consensus 46 ~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 122 (451)
|..+|.++-++|.- ...|+.+|+.+++......-.... ..++... +++....-.++...+||..+.+.+.++.- .
T Consensus 52 ~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~ 129 (264)
T PF05096_consen 52 FLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPY-P 129 (264)
T ss_dssp EEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE--S
T ss_pred ecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEEEEEec-C
Confidence 76778887777765 148999999998876443322222 2333333 34444446788999999999888888753 3
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~ 202 (451)
+.=+.++ .|++.|+.......+.++|..+..... ...+..-...-..++.+.+. +| ...+=.-....|.
T Consensus 130 ~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~------~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~ 198 (264)
T PF05096_consen 130 GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVR------TIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIV 198 (264)
T ss_dssp SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEE------EEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEE
T ss_pred CcceEEE--cCCCEEEEECCccceEEECCcccceEE------EEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEE
Confidence 4556777 456667766666789999986522110 00011000111234445554 33 4555555667788
Q ss_pred EEEcCCCceeeeeec----------------ccceeEEEECCCCCEEEEEeC
Q 012996 203 VWSLLKGRLLRNIVF----------------PSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 203 iwd~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~ 238 (451)
..|..+|+....+.. ..-.+.++++|..+.|++.+.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 889999888776631 235789999997766665553
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.10 E-value=0.12 Score=42.43 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=67.7
Q ss_pred cceeEEEECCCCCEEEEE-eCCCcEEEEE--ccCCCCCCCCCCceeeeeecc----CCcceeEEEEec-CCEEEEEcCCC
Q 012996 219 SVIDAIALDPAEHVFYAG-SRDGSIYIAA--LNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~-~~dg~i~i~d--~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
.--+.++|+.+.+.++.. +.+-.|.-|| ..++..... ..+..++. .....-.++... |.+.++.-..|
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr----~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR----KVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCc----ceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc
Confidence 344678999877776654 5566786677 555443222 11212211 112233455556 88888888899
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+|...|..+|+.+.++......|++++|--.
T Consensus 234 ~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 234 TVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 9999999999999999999999999999743
No 396
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.011 Score=58.92 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=94.5
Q ss_pred CeeEEEEccCCcEEE--EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 124 AVTCLVFSEDGSFLI--SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~--s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
++..+...+|+...+ ..+.+-.|..||+++..............-...........++.|.|.-. ...+....|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence 555666667765543 33444478999997754333222111111122223344456677777654 445667788888
Q ss_pred EEEEcCCC-ceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEec
Q 012996 202 KVWSLLKG-RLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST 279 (451)
Q Consensus 202 ~iwd~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 279 (451)
++..+... .....+......++++|+|.|+.+++|-..|++..|...-..... +.... .....|.+|+|-.
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~-------ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE-------IPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeec-------ccCCCcCCCcceeEEEEec
Confidence 88876533 233445667789999999999999999999999999765542100 00000 1147889999987
Q ss_pred -CCEEEEE
Q 012996 280 -GDLLISG 286 (451)
Q Consensus 280 -~~~l~s~ 286 (451)
..++++-
T Consensus 254 t~eflvvy 261 (1405)
T KOG3630|consen 254 TQEFLVVY 261 (1405)
T ss_pred ceeEEEEe
Confidence 5555543
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.04 E-value=0.073 Score=44.95 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=124.8
Q ss_pred EeeccCccc-CCCCCCccEEEEECCCCceeeeecCCC---CeeEEEECCCCcEEEEecc-----CCCEEEEEcCCC-cce
Q 012996 46 FLASSQLRE-QPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASG-RLL 115 (451)
Q Consensus 46 ~~~~~~~l~-~~~~d~g~i~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~-~~~ 115 (451)
|+|....-+ .+-.-+-...++|.+..+........+ -.-.=.|||||.+|...-. -|.|-|||.+.+ ..+
T Consensus 75 ~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrv 154 (366)
T COG3490 75 FHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRV 154 (366)
T ss_pred cCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccccee
Confidence 666554433 232332456788887766543332111 1112358999999987533 377999998754 456
Q ss_pred eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe-eCcchhhhhhhhccccc----------ceeccc--CCcCceeEEE
Q 012996 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW-SLLTVFEECESQRASHL----------YLHSFT--GHTLRITDIV 182 (451)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~i~~i~ 182 (451)
..+..|.-....+.|.+||+.++.+. |-|... |....+.....-.++.. ..+++. .+...|..++
T Consensus 155 gE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld 232 (366)
T COG3490 155 GEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLD 232 (366)
T ss_pred cccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeee
Confidence 67788887888999999999988763 445544 22111110000000111 111222 3455677777
Q ss_pred EeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEEEeC-CCcEEEEEcc
Q 012996 183 IGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALN 248 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 248 (451)
...++ ..++.+-..| --.+=-...++.+.-+. ....|-+++.+.+..+++..+- .+...+||..
T Consensus 233 ~g~dg--tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 233 IGRDG--TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eCCCC--cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 76665 3333332222 11111122344444333 2346778888876666655554 4567799999
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEe
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWD 296 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd 296 (451)
++.. +... --.....++-. ..-++..+.+|.+.++.
T Consensus 311 tG~v---------v~~a--~l~daaGva~~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGAV---------VSEA--ALPDAAGVAAA-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCcE---------Eecc--cccccccceec-cCceEEecCCceEEecc
Confidence 8752 1110 01112222222 34456667788888874
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.04 E-value=0.14 Score=47.06 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=53.7
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce-----------------eEEEEec--
Q 012996 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV-----------------TCLAYST-- 279 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v-----------------~~~~~~~-- 279 (451)
..+.+++.+|.+++.++...-|+|.++|+...... ...+|-...= ....-.+
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv---------rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV---------RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh---------hhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 35789999999999999888899999999886432 1222211100 0000001
Q ss_pred C-CEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 280 G-DLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 280 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
. -+++-+-.-|.|.||.+++|..+..+...
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence 1 12334566899999999999999887653
No 399
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.00 E-value=0.003 Score=37.66 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=30.7
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 114 (451)
....|.+++|+|...+||.|+.+|.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3567999999999999999999999999998 5543
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.98 E-value=0.2 Score=43.05 Aligned_cols=223 Identities=15% Similarity=0.125 Sum_probs=127.2
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcC------CC-cceeeecc-----ccCCeeEEEEccCCc------------EE
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVA------SG-RLLKKWHA-----HYRAVTCLVFSEDGS------------FL 137 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l 137 (451)
.-..|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999888887778899999986 11 22333331 234577788875332 26
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-C-CcCceeEEEEeecCCeeEEEEe-eCCCcEEEEEcCCCceee-
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-G-HTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLR- 213 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~- 213 (451)
+.+++||+|.-|...-.... .. .....+. . ....-..+++...+.+.+|+.+ -..++|.+||-.-.+...
T Consensus 104 if~tEdGTisaW~p~v~~t~-----~~-~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~ 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTR-----MT-RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP 177 (336)
T ss_pred EEEeCCceEEeecCcCCccc-----cc-ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC
Confidence 77889999999985321000 00 0111111 1 1223345666654333455544 467889999854322110
Q ss_pred -eeecc--------ccee---------EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee--ccCCccee
Q 012996 214 -NIVFP--------SVID---------AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT 273 (451)
Q Consensus 214 -~~~~~--------~~i~---------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 273 (451)
.+..+ -.|. -..-.++...=+.|..-|.|-+||+... .++++ .+.-...+
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNaPW 247 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNAPW 247 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccCCc
Confidence 11100 0111 1111222222233444568888888763 34433 22334556
Q ss_pred EEEEec-------CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC------CeeEEEEEe
Q 012996 274 CLAYST-------GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVR 320 (451)
Q Consensus 274 ~~~~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~ 320 (451)
.|+..| +.+|+---.||+|..||..+++.+..+....+ .++.|.|-.
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 677655 45666666799999999999998888876544 467788765
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.17 Score=43.12 Aligned_cols=168 Identities=7% Similarity=0.113 Sum_probs=110.6
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
...+.++.|+|+.+.|++......-.|+=...|+.+.++.-. -...-.|.+..++++.++--.++.+.++.+.......
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 345999999999999988888888888877889998877421 2344578888888888887788888888775432211
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------cccceeEEEEC
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------FPSVIDAIALD 227 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~i~~~~~~ 227 (451)
..... ...+...........+++|.+.. ..|+.+-.-.-+.||............ .-..+.++.|+
T Consensus 165 ~~~~~-~i~L~~~~k~N~GfEGlA~d~~~--~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 165 SAKVQ-KIPLGTTNKKNKGFEGLAWDPVD--HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred eccce-EEeccccCCCCcCceeeecCCCC--ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 11111 11122222225567789999887 677777777777777765332111110 12356778888
Q ss_pred C-CCCEEEEEeCCCcEEEEEccCC
Q 012996 228 P-AEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 228 ~-~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+ .+..++.+..++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 7 5566666777777877777664
No 402
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.89 E-value=0.0054 Score=36.56 Aligned_cols=35 Identities=23% Similarity=0.410 Sum_probs=30.8
Q ss_pred eecccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 215 IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
...+..|.+++|+|..+++|.++.+|.|.+|.++.
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 34567799999999999999999999999999843
No 403
>PHA02790 Kelch-like protein; Provisional
Probab=96.82 E-value=0.16 Score=48.46 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=86.4
Q ss_pred CCcEEEEeccCC-----CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhh
Q 012996 91 HGTYIAGGGQSG-----DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQ 161 (451)
Q Consensus 91 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~ 161 (451)
++.++++|+.++ .+..||..+++-.. .+.........+ .-++...+.||.++ .+..||..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~-------- 340 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGD-------- 340 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCC--------
Confidence 456667777543 46778877654322 222111122222 23577777887643 467777643
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCCCceeeeeec--ccceeEEEECCCCCEEEEE
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLKGRLLRNIVF--PSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~ 236 (451)
.....+..+...... .++ ...++ .+.+.|+.++ .+..||..+.+-...-.. +..-.+++ .-++.+.+.|
T Consensus 341 -n~W~~~~~l~~~r~~-~~~-~~~~g--~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G 414 (480)
T PHA02790 341 -AAWVNMPSLLKPRCN-PAV-ASINN--VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG 414 (480)
T ss_pred -CeEEECCCCCCCCcc-cEE-EEECC--EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC
Confidence 122222222211111 111 22344 6667777553 477888876644332111 11111221 2245555555
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCC
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH 300 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 300 (451)
|.+.+||..+.. |..+..+....... +++...+...+.||.+ ..+..||..+.
T Consensus 415 ---G~~e~ydp~~~~-------W~~~~~m~~~r~~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 415 ---RNAEFYCESSNT-------WTLIDDPIYPRDNP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ---CceEEecCCCCc-------EeEcCCCCCCcccc-EEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 356778876543 33333332222222 2333337777777754 24666666544
No 404
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.27 Score=44.56 Aligned_cols=151 Identities=10% Similarity=0.088 Sum_probs=92.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCc--ee--eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce----ee
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQ--VE--VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL----KK 117 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~ 117 (451)
|..|.+..+.+... |.+.-|-+.... +. ......++|.++.||+|.+.||+--.+..|.+++....+.. .+
T Consensus 29 FfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ 107 (657)
T KOG2377|consen 29 FFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQE 107 (657)
T ss_pred eeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHH
Confidence 44444443333333 667777665433 22 22335679999999999999999999999999997544332 22
Q ss_pred eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~ 197 (451)
.+.....|....|+.+ .-++..+.. -+-+|.... ....++....|...|.-..|+++..--+++++-.
T Consensus 108 ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~p----------ekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~ 175 (657)
T KOG2377|consen 108 CKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLP----------EKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVL 175 (657)
T ss_pred hccCcceeEEEEEecC-eeEEEEecC-CeEEEEEch----------hhhhhhhhhhcccCccEEEEccccceEeeecccc
Confidence 3444566899999865 445555544 366666532 2334555667888888888888763122223324
Q ss_pred CCcEEEEEcCCC
Q 012996 198 DRTCKVWSLLKG 209 (451)
Q Consensus 198 d~~i~iwd~~~~ 209 (451)
.+++.=+.++++
T Consensus 176 ~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 176 ENVLNPFHFRAG 187 (657)
T ss_pred ccccccEEEeec
Confidence 455555555544
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.72 E-value=0.33 Score=41.84 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=91.9
Q ss_pred ceEEecceEeeccCcccCCC--CCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEE-cCCCcc
Q 012996 38 GLACVGQRFLASSQLREQPS--ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWE-VASGRL 114 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~--~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~ 114 (451)
.+...+ .+++++.+|... .+...+.++.......... ....+..-.|++++...++...+....++. ..++..
T Consensus 25 ~~~s~A--vS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPA--VSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceE--ECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 566667 999999887766 3335666665544333332 445788889999988777766666666664 333332
Q ss_pred ee-eecc--ccCCeeEEEEccCCcEEEEee---CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 115 LK-KWHA--HYRAVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 115 ~~-~~~~--~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
.. .... -.+.|..+.++|||..++... .++.|.+--+........ ................+.++.|..+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~--~~l~~~~~~~~~~~~~v~~v~W~~~~- 177 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVP--RRLTGPRRVAPPLLSDVTDVAWSDDS- 177 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCc--ceeccceEecccccCcceeeeecCCC-
Confidence 21 1211 122899999999999877655 357777776643211100 00111222222345688899999887
Q ss_pred eeEEEEeeCCC
Q 012996 189 SATIVSASEDR 199 (451)
Q Consensus 189 ~~~l~s~~~d~ 199 (451)
.+++.+...+
T Consensus 178 -~L~V~~~~~~ 187 (253)
T PF10647_consen 178 -TLVVLGRSAG 187 (253)
T ss_pred -EEEEEeCCCC
Confidence 5555554433
No 406
>PHA03098 kelch-like protein; Provisional
Probab=96.72 E-value=0.16 Score=49.51 Aligned_cols=187 Identities=11% Similarity=0.077 Sum_probs=86.2
Q ss_pred CCCcEEEEeccCC------CEEEEEcCCCcceee--eccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhh
Q 012996 90 SHGTYIAGGGQSG------DIYMWEVASGRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFE 156 (451)
Q Consensus 90 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~ 156 (451)
.++..++.|+.++ .+..||..+.+-... +.........+. -++..++.||.++ .+..||..+.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 3466677776542 477888776643221 111111222222 2577777777652 4667776541
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC------CcEEEEEcCCCceeeeeeccc--ceeEEEECC
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLLRNIVFPS--VIDAIALDP 228 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~ 228 (451)
.......+...... .+++ ..++ .+.+.|+.+ ..+..||+.+.+-...-..+. .-.+++ ..
T Consensus 369 -------~W~~~~~lp~~r~~-~~~~-~~~~--~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~ 436 (534)
T PHA03098 369 -------KWREEPPLIFPRYN-PCVV-NVNN--LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YH 436 (534)
T ss_pred -------ceeeCCCcCcCCcc-ceEE-EECC--EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EE
Confidence 11111111111111 1112 2233 666666632 457889987764332211111 111222 22
Q ss_pred CCCEEEEEeCCC--------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEE
Q 012996 229 AEHVFYAGSRDG--------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVW 295 (451)
Q Consensus 229 ~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iw 295 (451)
++..++.|+.++ .+.+||..+.. |..+..+.........+.+ .+.+++.||.+ +.|.+|
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~-------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 508 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNK-------WTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVY 508 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCc-------eeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEE
Confidence 556666665432 37888887653 2222211111111111222 35666666654 356777
Q ss_pred eCCCC
Q 012996 296 DPITH 300 (451)
Q Consensus 296 d~~~~ 300 (451)
|..+.
T Consensus 509 d~~~~ 513 (534)
T PHA03098 509 DDKTN 513 (534)
T ss_pred eCCCC
Confidence 76654
No 407
>PHA03098 kelch-like protein; Provisional
Probab=96.60 E-value=0.26 Score=48.00 Aligned_cols=177 Identities=11% Similarity=0.128 Sum_probs=82.8
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecC--CCCeeEEE
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLP--AEPIKPIA 87 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~--~~~v~~~~ 87 (451)
.+..||..+.+.. .+.....+.....+ ...++...+.||.++ ..+..||..+......... ...-.+++
T Consensus 312 ~v~~yd~~~~~W~-~~~~~~~~R~~~~~----~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~ 386 (534)
T PHA03098 312 SVVSYDTKTKSWN-KVPELIYPRKNPGV----TVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV 386 (534)
T ss_pred cEEEEeCCCCeee-ECCCCCcccccceE----EEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE
Confidence 4678887776553 22211111111111 233566667776541 3577888776654332211 11111222
Q ss_pred ECCCCcEEEEeccC------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC--------cEEEeeC
Q 012996 88 ANSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG--------CVRIWSL 151 (451)
Q Consensus 88 ~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg--------~i~vwd~ 151 (451)
.-++++.+.||.+ ..+..||..+++-.. .+....... ++. ..++..++.||.++ .+.+||.
T Consensus 387 -~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 387 -NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred -EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecC
Confidence 2356777777632 358889987653221 111111111 222 23566667776432 3778887
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCce
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRL 211 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~ 211 (451)
.+. ....+......... .+++. .++ .+++.|+.+ ..+.+||..+.+-
T Consensus 464 ~~~---------~W~~~~~~~~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 464 VTN---------KWTELSSLNFPRIN-ASLCI-FNN--KIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCC---------ceeeCCCCCccccc-ceEEE-ECC--EEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 552 22222111111111 11222 233 666666654 4677888776543
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.59 E-value=0.56 Score=42.77 Aligned_cols=229 Identities=16% Similarity=0.154 Sum_probs=100.6
Q ss_pred CCcEEEEec-cCCCEEEEEcCCC----cceeeecc---cc----CCeeEEEEccCCcEEEEeeC------CCcEEEeeCc
Q 012996 91 HGTYIAGGG-QSGDIYMWEVASG----RLLKKWHA---HY----RAVTCLVFSEDGSFLISGSE------DGCVRIWSLL 152 (451)
Q Consensus 91 ~~~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~ 152 (451)
+.++|++.+ ..+.|+|.|+.+. ++.+++.. +. .....+..-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456776665 6788999999743 33344322 11 22234445578888887533 2457777764
Q ss_pred chhhhhhhhcccccceecccC---CcCceeEEEEeecCCeeEEEEeeC--------------------CCcEEEEEcCCC
Q 012996 153 TVFEECESQRASHLYLHSFTG---HTLRITDIVIGYGGVSATIVSASE--------------------DRTCKVWSLLKG 209 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~~~~~~~~~l~s~~~--------------------d~~i~iwd~~~~ 209 (451)
+.. ....... ....-+++-+.|.. +.++|+.. ..++.+||+.+.
T Consensus 166 tf~-----------v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFE-----------VKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T-------------EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred ccc-----------ccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence 321 1111111 11223344455544 56666543 458999999999
Q ss_pred ceeeeeecc---cceeEEEE--CCCCCEEEEEe-CCCcEEEEEc-cCCCCCCCCCCceeeeee-----------------
Q 012996 210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGS-RDGSIYIAAL-NAESPSTSSYGMHIIGSL----------------- 265 (451)
Q Consensus 210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~-~dg~i~i~d~-~~~~~~~~~~~~~~~~~~----------------- 265 (451)
+.++++... .....+.| .|+..+=++|+ -...|..|-- ..+. ...+.+..+
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~-----W~a~kVi~ip~~~v~~~~lp~ml~~~ 307 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGE-----WAAEKVIDIPAKKVEGWILPEMLKPF 307 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTE-----EEEEEEEEE--EE--SS---GGGGGG
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCC-----eeeeEEEECCCcccCccccccccccc
Confidence 999999854 23444554 55555544443 3344444433 2221 001111111
Q ss_pred ccCCcceeEEEEec-CCEEEEEc-CCCcEEEEeCCCC---ceEEEeecC----------------CCCeeEEEEEecCce
Q 012996 266 SDHSKAVTCLAYST-GDLLISGS-EDGMVRVWDPITH---NIVRMFRLA----------------KGPVNNILVVRRPLY 324 (451)
Q Consensus 266 ~~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~---~~~~~~~~~----------------~~~v~~l~~s~~~~~ 324 (451)
..-..-|+.|..|. .++|..++ .+|.|+.||+.+. +++.++..- .+...-+..|.||+.
T Consensus 308 ~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkR 387 (461)
T PF05694_consen 308 GAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKR 387 (461)
T ss_dssp -EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSE
T ss_pred ccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeE
Confidence 11135678999999 77776665 5999999999764 333333210 123467888999988
Q ss_pred eeeccCCCCcccccc
Q 012996 325 LNLGSFSNPHTSSRR 339 (451)
Q Consensus 325 l~~~s~d~~i~iw~~ 339 (451)
|...+ .-..-||-
T Consensus 388 lYvTn--SLys~WD~ 400 (461)
T PF05694_consen 388 LYVTN--SLYSAWDK 400 (461)
T ss_dssp EEEE------HHHHH
T ss_pred EEEEe--eccccccc
Confidence 86542 23344553
No 409
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.58 E-value=0.51 Score=45.68 Aligned_cols=176 Identities=9% Similarity=0.089 Sum_probs=89.4
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSF 136 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~ 136 (451)
-.|+|++..........-....+..+.|+.+..+|+ ...+|.++||++. |+.+... ......|..+.|..+|-.
T Consensus 64 ~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceE
Confidence 568888876544333222334888999998776554 5899999999974 3333321 223344666666656644
Q ss_pred EEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEEEEee-CCCcEEEEEcCCC-cee
Q 012996 137 LISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSAS-EDRTCKVWSLLKG-RLL 212 (451)
Q Consensus 137 l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~-~d~~i~iwd~~~~-~~~ 212 (451)
+++. +|.+.+ -+...... ...........+-.+-...+++.. ..++-.. ..+ ..++..... ...
T Consensus 142 vlt~--~g~v~~i~~~~~~~~---------~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 142 VLTV--SGQVILINGVEEPKL---------RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EEec--CCcEEEEcCCCcchh---------hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 4444 444443 33322100 000011111111122222222110 1111111 000 011111111 111
Q ss_pred eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 213 RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 213 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
..+. ..+.+..+.+||+.++|+.-+..|.|.+-+.+..
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 2222 2367888999999999999999999999887764
No 410
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.56 E-value=0.8 Score=46.11 Aligned_cols=207 Identities=12% Similarity=0.065 Sum_probs=109.8
Q ss_pred CcEEEEeccCCCEEEEEcCCCcceeeeccccC--------CeeEEEEcc----------------CCcEEEEeeCCCcEE
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR--------AVTCLVFSE----------------DGSFLISGSEDGCVR 147 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~~~----------------~~~~l~s~~~dg~i~ 147 (451)
+..+.+++.++.|.-.|..+|+.+..+..... ....+.+.. ++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55666778888999999999998877643221 112233321 234788888899999
Q ss_pred EeeCcchhhhhhhhccccccee-cccCCcC---ceeEEEEeecCCeeEEEEeeC----------CCcEEEEEcCCCceee
Q 012996 148 IWSLLTVFEECESQRASHLYLH-SFTGHTL---RITDIVIGYGGVSATIVSASE----------DRTCKVWSLLKGRLLR 213 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~---~i~~i~~~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~ 213 (451)
-.|.+++............... .+..... .+++--.-.+ ..++.|+. +|.|+-+|..+|+.+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~---g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG---TTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC---CEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 9998775433221110000000 0000000 0111111112 35555542 6889999999999988
Q ss_pred eeeccc------------------ce-eEEEECCCCCEEEEEeCCC------------------cEEEEEccCCCCCCCC
Q 012996 214 NIVFPS------------------VI-DAIALDPAEHVFYAGSRDG------------------SIYIAALNAESPSTSS 256 (451)
Q Consensus 214 ~~~~~~------------------~i-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~~~ 256 (451)
.+.... .+ ...+++|....++.+..+. .|.-.|.++++...
T Consensus 351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W-- 428 (764)
T TIGR03074 351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW-- 428 (764)
T ss_pred EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE--
Confidence 775210 00 2345566555665544322 23333333332110
Q ss_pred CCceeeeeeccCC-------cceeEEEEec--C---CEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996 257 YGMHIIGSLSDHS-------KAVTCLAYST--G---DLLISGSEDGMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 257 ~~~~~~~~~~~~~-------~~v~~~~~~~--~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 308 (451)
......|. ....-+.+.. + ..++.++.+|.+.+.|.++|+++...+.
T Consensus 429 -----~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 429 -----VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred -----EecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 01111111 1111112221 3 2788999999999999999998876543
No 411
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.55 E-value=0.57 Score=42.30 Aligned_cols=244 Identities=14% Similarity=0.118 Sum_probs=117.7
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc---eeee----ccccCCeeEEEEccC----CcEEEEeeCC-------
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL---LKKW----HAHYRAVTCLVFSED----GSFLISGSED------- 143 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~~~~----~~~l~s~~~d------- 143 (451)
..+.|+|.|||+++++ ...|.|++++ ..+.. +..+ .........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4679999999988776 5589999999 44443 2222 234457789999994 3333333321
Q ss_pred -CcEEEeeCcchhhhhhhhcccccceeccc---CCcCceeEEEEeecCCeeEEEEeeCCC-------------cEEEEEc
Q 012996 144 -GCVRIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASEDR-------------TCKVWSL 206 (451)
Q Consensus 144 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~s~~~d~-------------~i~iwd~ 206 (451)
..|.-|....... .. ......+.... .....-..|.|.|++ .+.++.+..+ .|.-.+.
T Consensus 81 ~~~v~r~~~~~~~~--~~-~~~~~l~~~~p~~~~~~H~g~~l~fgpDG--~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 81 DNRVVRFTLSDGDG--DL-SSEEVLVTGLPDTSSGNHNGGGLAFGPDG--KLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp EEEEEEEEEETTSC--EE-EEEEEEEEEEES-CSSSS-EEEEEE-TTS--EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred ceeeEEEeccCCcc--cc-ccceEEEEEeCCCCCCCCCCccccCCCCC--cEEEEeCCCCCcccccccccccceEEEecc
Confidence 1333343322100 00 00111111111 122334568899988 5555544432 2333332
Q ss_pred CCCce-------------eeeee-cccceeEEEECCC-CCEEEEE-eCCCcEEEEEccCCCC----------CC------
Q 012996 207 LKGRL-------------LRNIV-FPSVIDAIALDPA-EHVFYAG-SRDGSIYIAALNAESP----------ST------ 254 (451)
Q Consensus 207 ~~~~~-------------~~~~~-~~~~i~~~~~~~~-~~~l~~~-~~dg~i~i~d~~~~~~----------~~------ 254 (451)
. ++. ...+. .-.....++|+|. +.++++= +.++.=.+.-+..+.. ..
T Consensus 156 d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~ 234 (331)
T PF07995_consen 156 D-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIG 234 (331)
T ss_dssp T-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-EC
T ss_pred c-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccc
Confidence 1 211 00111 1123567899998 5555432 2222222222222110 00
Q ss_pred ----CCCCceeeeeeccCCcceeEEEEec--------CCEEEEEcCCCcEEEEeCCCCceEEE----eecCCCCeeEEEE
Q 012996 255 ----SSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRM----FRLAKGPVNNILV 318 (451)
Q Consensus 255 ----~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~l~~ 318 (451)
......+...+..| ..+..+.|.. +.+|++.-..+.|....+..+..+.. +......+..+++
T Consensus 235 ~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~ 313 (331)
T PF07995_consen 235 DAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQ 313 (331)
T ss_dssp TGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEE
T ss_pred cccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEE
Confidence 00011233344444 5667777763 44666666677888888765533322 2233447999999
Q ss_pred EecCceeeeccCCCCc
Q 012996 319 VRRPLYLNLGSFSNPH 334 (451)
Q Consensus 319 s~~~~~l~~~s~d~~i 334 (451)
.|||.+.++.+.+|.|
T Consensus 314 ~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKI 329 (331)
T ss_dssp ETTSEEEEEE-TTTTE
T ss_pred cCCCeEEEEECCCCeE
Confidence 9999998888777765
No 412
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.49 E-value=0.33 Score=47.46 Aligned_cols=156 Identities=8% Similarity=0.085 Sum_probs=98.2
Q ss_pred CcEEEEeeCCCcEEEeeCcchhhhhhhh-----ccc-------ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 134 GSFLISGSEDGCVRIWSLLTVFEECESQ-----RAS-------HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~-------~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
..+++++. .+.|.||++.......... ... ........ ....|+-|.+..-+....|+.+..||.|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 55666655 5689999886543311100 000 00011111 3345667766665666899999999999
Q ss_pred EEEEcCC-------C-------------ceeeeeecccceeEEEEC--CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996 202 KVWSLLK-------G-------------RLLRNIVFPSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (451)
Q Consensus 202 ~iwd~~~-------~-------------~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (451)
.+|...+ . ++...+..+..++.++++ ...+++|+++....|.+|-+.......
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~----- 201 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERF----- 201 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccc-----
Confidence 9996521 0 122333456788999998 888999999998888887765531110
Q ss_pred eeeeeeccCCcceeEEEEec-C---C---EEEEEcCCCcEEEEeC
Q 012996 260 HIIGSLSDHSKAVTCLAYST-G---D---LLISGSEDGMVRVWDP 297 (451)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~-~---~---~l~s~~~dg~i~iwd~ 297 (451)
....-..|...|.+|+|-+ . . .+++++-.|.+.+|++
T Consensus 202 -~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 202 -YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0111123677899999977 2 2 7888899999999887
No 413
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.44 E-value=0.71 Score=42.16 Aligned_cols=193 Identities=10% Similarity=0.092 Sum_probs=92.0
Q ss_pred eccCcccCCCCCCccEEEEECCCCce--e-eeecC---------CCCeeEEEECCCCcEEEEec------cCCCEEEEEc
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQV--E-VKSLP---------AEPIKPIAANSHGTYIAGGG------QSGDIYMWEV 109 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~~--~-~~~~~---------~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~ 109 (451)
...++|++.+-.++.|.|.|+.+... . .+... -.....+..-|+|+.++++- .-|.+.++|-
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence 35677888887669999999873321 1 11111 12233455568898887752 2245888888
Q ss_pred CCCcceeeecccc---CCeeEEEEccCCcEEEEee--------------------CCCcEEEeeCcchhhhhhhhccccc
Q 012996 110 ASGRLLKKWHAHY---RAVTCLVFSEDGSFLISGS--------------------EDGCVRIWSLLTVFEECESQRASHL 166 (451)
Q Consensus 110 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 166 (451)
++.+....+.... ..-..+-|.|..+.++|.. ...++.+||+.+ ..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-----------r~ 233 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-----------RK 233 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-----------TE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-----------Cc
Confidence 8777777765432 2335677788777777752 235799999954 34
Q ss_pred ceecccCC--cCceeEEEEeecCCeeEEEEe-eCCCcEEEEEc-CCCce----eeeee------------------cccc
Q 012996 167 YLHSFTGH--TLRITDIVIGYGGVSATIVSA-SEDRTCKVWSL-LKGRL----LRNIV------------------FPSV 220 (451)
Q Consensus 167 ~~~~~~~~--~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~-~~~~~----~~~~~------------------~~~~ 220 (451)
.++++.-- ......+.|..++...+-+++ .....|..|-- ..++- +-.+. .+.-
T Consensus 234 ~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~L 313 (461)
T PF05694_consen 234 LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPL 313 (461)
T ss_dssp EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE---
T ss_pred EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCc
Confidence 44444322 234556777766544443333 34445554433 33321 11111 1345
Q ss_pred eeEEEECCCCCEEEEEe-CCCcEEEEEccCCC
Q 012996 221 IDAIALDPAEHVFYAGS-RDGSIYIAALNAES 251 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 251 (451)
|+.+.+|.|.++|++++ ..|.|+.||+....
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 89999999999999876 57899999998864
No 414
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.38 E-value=0.00089 Score=64.57 Aligned_cols=90 Identities=19% Similarity=0.337 Sum_probs=59.2
Q ss_pred ccEEEEECC--CCce----eeee--cCCCCeeEEEECC---CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEE
Q 012996 61 GSILYWSWS--KPQV----EVKS--LPAEPIKPIAANS---HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV 129 (451)
Q Consensus 61 g~i~vw~~~--~~~~----~~~~--~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 129 (451)
|.+.||+++ .+++ .... .-...+.-+.|.| +..++..+-.++.|++.+...... ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 789999986 2222 1111 1233445555544 677888888889988877654432 44566777666554
Q ss_pred -----------EccCCcEEEEeeCCCcEEEeeC
Q 012996 130 -----------FSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 130 -----------~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
.+|||..|+++..||.++.|.+
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 4678888888888888888876
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.34 E-value=0.86 Score=42.12 Aligned_cols=262 Identities=15% Similarity=0.120 Sum_probs=135.4
Q ss_pred ccCcccCCCCCCccEEEEECCCCc-----eeeeecCCCCeeEEEECC-----CCcEEEEeccCCCEEEEEcCC--Cc---
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-----HGTYIAGGGQSGDIYMWEVAS--GR--- 113 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~--~~--- 113 (451)
....+++|+.. |.++||+..... .........+|..+..-+ +...||+ -.-..+.||.+.. |.
T Consensus 36 ~~d~IivGS~~-G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYS-GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccc-cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34567777777 999999976433 233344567888888632 3345555 4456788888722 11
Q ss_pred ----ceeeecccc--CCeeEEEEcc----C-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 114 ----LLKKWHAHY--RAVTCLVFSE----D-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 114 ----~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
.+..+..|. .....+++-| . ..++++-+.||.+.+|+-+. ......+.. -.-...++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----------~~f~~~lp~-~llPgPl~ 181 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----------FAFSRFLPD-FLLPGPLC 181 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----------EEEEEEcCC-CCCCcCeE
Confidence 112222232 2223333333 2 36788899999999999743 222222222 22223456
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCC--------------------Cc---eeeeeecccceeEEEE---CCCCCEEEEE
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLK--------------------GR---LLRNIVFPSVIDAIAL---DPAEHVFYAG 236 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~--------------------~~---~~~~~~~~~~i~~~~~---~~~~~~l~~~ 236 (451)
+.+.. ..+++++.+..+..|.... ++ +..++.....+..+.. +.....+++-
T Consensus 182 Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvL 259 (418)
T PF14727_consen 182 YCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVL 259 (418)
T ss_pred EeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEE
Confidence 66666 6888888888888886521 01 1122333344444433 2222233322
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce--eEEE--Eec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV--TCLA--YST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~--~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
+ ...+.+.+-... ......+....... +.+. ..+ ...++.++.++++.||.= .+++...+...
T Consensus 260 g-er~Lf~l~~~G~--------l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l~~ 328 (418)
T PF14727_consen 260 G-ERSLFCLKDNGS--------LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQLPH 328 (418)
T ss_pred e-cceEEEEcCCCe--------EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCCCC
Confidence 2 234444444321 12222332211111 1111 112 125888999999999963 33444433333
Q ss_pred CCeeEEE---EEecCceeeeccCCCCccccc
Q 012996 311 GPVNNIL---VVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 311 ~~v~~l~---~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.|| ++. |..-...|++-+.+|.+.+-=
T Consensus 329 ~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~Y 358 (418)
T PF14727_consen 329 VPV-ALSVANFNGLKGLIVSLSDEGQLSVSY 358 (418)
T ss_pred CCE-EEEecccCCCCceEEEEcCCCcEEEEE
Confidence 343 232 223345777777788877643
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.25 E-value=0.98 Score=45.49 Aligned_cols=115 Identities=15% Similarity=0.240 Sum_probs=69.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCC---ceEEecceEe----------------eccCcccCCCCCCccE
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPH---GLACVGQRFL----------------ASSQLREQPSASSGSI 63 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~----------------~~~~~l~~~~~d~g~i 63 (451)
..|..++ .++.|.-.|..||+.+-++........ ...|-...+. ..+..++.++.| +.+
T Consensus 195 g~lYv~t-~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D-g~L 272 (764)
T TIGR03074 195 DTLYLCT-PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD-ARL 272 (764)
T ss_pred CEEEEEC-CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC-CeE
Confidence 3466667 788999999999999988765432111 0111010021 123355566666 888
Q ss_pred EEEECCCCceeeeecCCCCee-------------EEEECC--CCcEEEEecc----------CCCEEEEEcCCCcceeee
Q 012996 64 LYWSWSKPQVEVKSLPAEPIK-------------PIAANS--HGTYIAGGGQ----------SGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 64 ~vw~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~ 118 (451)
.-.|.++++........+.|. .+.-.| .+..+++|+. +|.|+-+|..+|+.+..+
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999888776544332221 111222 2345666642 688999999999988776
Q ss_pred c
Q 012996 119 H 119 (451)
Q Consensus 119 ~ 119 (451)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.9 Score=41.38 Aligned_cols=142 Identities=12% Similarity=0.100 Sum_probs=82.0
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
+.+-|...++.|++ ...|.+.=|-+... ...-.+ ....++|.++.|++|.+.+++--.+..|.+++.....
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~----- 99 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN----- 99 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc-----
Confidence 44445444444443 23344555554322 122222 2356799999999999999999999999999873210
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (451)
......+.....+..|.+.+|..+. -++..+..| +-+|-.... +.++... +...|.-..|.++.+.+..++
T Consensus 100 --~~l~~~~~ck~k~~~IlGF~W~~s~---e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 100 --SQLEYTQECKTKNANILGFCWTSST---EIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred --hhhHHHHHhccCcceeEEEEEecCe---eEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1112233334455668888887763 444444444 555544322 2222222 566778888888777655443
No 418
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.23 E-value=0.21 Score=48.32 Aligned_cols=120 Identities=18% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-cccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-AHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
..+.-+.-+.-++..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.|..+.|.+|.-....-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 345555556556655554555679999998887543322 457889999996 58999999999999999865221100
Q ss_pred hhhhcccccceec--ccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 158 CESQRASHLYLHS--FTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 158 ~~~~~~~~~~~~~--~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
. ..+....+.. +..|+ .+|.+..|..+| .+++|+ ++.+.|+|-
T Consensus 110 ~--~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 110 N--KGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TLVVGS-GNQLFVFDK 155 (631)
T ss_pred c--CCcccceeEEEEeecCCCCCccceeEecCC---eEEEEe-CCEEEEECC
Confidence 0 0112222222 23333 578899999987 444443 356788774
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.066 Score=53.76 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=91.3
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--------e----eecccceeEEEECCC-CCEEEEEeCCCcEE
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--------N----IVFPSVIDAIALDPA-EHVFYAGSRDGSIY 243 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--------~----~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~ 243 (451)
++..+...++..-..++..+.+-.|..||+++-..-. . +.......++.|.|. ....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555555566532344444455578899997543221 1 112344567788884 34466777889998
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC----CCCeeEEEE
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA----KGPVNNILV 318 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~l~~ 318 (451)
+..+..... .+.. -.-....++++|+| |..++.|-..|++.-|... ++....+... ...|.+|+|
T Consensus 182 V~~~~~~~~--------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 182 VKSTKQLAQ--------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhh--------hhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEE
Confidence 887765431 1111 13456789999999 9999999999999999843 4444444322 357999999
Q ss_pred EecCceeeec
Q 012996 319 VRRPLYLNLG 328 (451)
Q Consensus 319 s~~~~~l~~~ 328 (451)
-..-.++++-
T Consensus 252 l~t~eflvvy 261 (1405)
T KOG3630|consen 252 LSTQEFLVVY 261 (1405)
T ss_pred ecceeEEEEe
Confidence 9877777653
No 420
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.67 Score=39.62 Aligned_cols=262 Identities=10% Similarity=0.036 Sum_probs=135.3
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--- 78 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--- 78 (451)
|.+...+. .+..++|.|+++......+.... -.+-.. . +.-.|++..++..+ ..+.+.|+.++..+....
T Consensus 96 e~yvyvad-~ssGL~IvDIS~P~sP~~~~~ln-t~gyay--g--v~vsGn~aYVadld-dgfLivdvsdpssP~lagrya 168 (370)
T COG5276 96 EEYVYVAD-WSSGLRIVDISTPDSPTLIGFLN-TDGYAY--G--VYVSGNYAYVADLD-DGFLIVDVSDPSSPQLAGRYA 168 (370)
T ss_pred ccEEEEEc-CCCceEEEeccCCCCcceecccc-CCceEE--E--EEecCCEEEEeecc-CcEEEEECCCCCCceeeeeec
Confidence 44566666 77889999998766543332111 111112 2 55678888787766 566778887665443322
Q ss_pred -CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 79 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
....-..++.| |++-..+..|+-+.|-|+........+ ......+.++..+++..+++... --+.+-|...
T Consensus 169 ~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~-- 242 (370)
T COG5276 169 LPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSG-- 242 (370)
T ss_pred cCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCC--
Confidence 23344667776 777777788999999999765432221 11223677888877665555443 3467777754
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee---eeeccc-ceeEEEECCCCC
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR---NIVFPS-VIDAIALDPAEH 231 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-~i~~~~~~~~~~ 231 (451)
.+...+........++.--.+.-.+ ++......+.-+.+.|+.+..... .+...+ .-..+.. .+.
T Consensus 243 -------~ssp~~~gsyet~~p~~~s~v~Vs~--~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~ 311 (370)
T COG5276 243 -------PSSPTVFGSYETSNPVSISTVPVSG--EYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGN 311 (370)
T ss_pred -------CCCceEeeccccCCcccccceeccc--ceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecC
Confidence 1211222222222222111222333 566777777777777776543221 111111 1222222 334
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
++..+..+ ...+.+....+... ...+....+.+.+.+- .+.+.+...++-+.||+.
T Consensus 312 y~yiadkn-~g~vV~~s~~s~m~---------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 312 YNYIADKN-TGAVVDASPPSMMD---------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eeEeccCC-ceEEEeCCChhhcc---------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 44444333 34444444332111 1111112222223332 457777788888888875
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.16 E-value=0.21 Score=48.22 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=69.9
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeeec--ccceeEEEEC--CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIVF--PSVIDAIALD--PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS- 264 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~- 264 (451)
...++.+....+.|||.+.+........ ...|..+.|. |+++.+++.+..+.|.+|.-...........+.++..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3444444556799999998875554444 7889999985 5888888888999999986533222122222233332
Q ss_pred -eccCC-cceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996 265 -LSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 265 -~~~~~-~~v~~~~~~~~~~l~s~~~dg~i~iwd~ 297 (451)
+..|+ .+|.+..|.++..|++|+ ++.+.|+|-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 23444 689999999955555554 456888874
No 422
>PHA02790 Kelch-like protein; Provisional
Probab=96.10 E-value=0.73 Score=44.07 Aligned_cols=139 Identities=12% Similarity=0.002 Sum_probs=67.8
Q ss_pred EEeecCCCCC-----CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC-ccEEEEECCCCceeeee
Q 012996 4 LIASSSVADT-----GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS-GSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-g~i~vw~~~~~~~~~~~ 77 (451)
+++.|+ .++ ++..||..+++... +.....+ ..-.++ ...++...++||.++ ..+..||..++......
T Consensus 274 lyviGG-~~~~~~~~~v~~Ydp~~~~W~~-~~~m~~~-r~~~~~---v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 274 VYLIGG-WMNNEIHNNAIAVNYISNNWIP-IPPMNSP-RLYASG---VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred EEEEcC-CCCCCcCCeEEEEECCCCEEEE-CCCCCch-hhcceE---EEECCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 456666 443 46678877665432 1111111 111111 234677777777642 46788887665543322
Q ss_pred cCCCCe-eEEEECCCCcEEEEeccCC---CEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 78 LPAEPI-KPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 78 ~~~~~v-~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
....+. ......-+|++.+.||.++ .+..||..+.+-.. .+....... +++ .-+++..+.|+ .+.+||.
T Consensus 348 ~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~GG---~~e~ydp 422 (480)
T PHA02790 348 SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVGR---NAEFYCE 422 (480)
T ss_pred CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEECC---ceEEecC
Confidence 211111 1111223577778877653 47788876653221 111111111 222 23466666663 5678887
Q ss_pred cc
Q 012996 152 LT 153 (451)
Q Consensus 152 ~~ 153 (451)
.+
T Consensus 423 ~~ 424 (480)
T PHA02790 423 SS 424 (480)
T ss_pred CC
Confidence 54
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.10 E-value=1.1 Score=41.13 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=80.2
Q ss_pred CCeeEEEECCCCcEEEEec-----------cCC-CEEEEEcCC--Ccc--eeeeccccCCeeEEEEccCCcEEEEeeCCC
Q 012996 81 EPIKPIAANSHGTYIAGGG-----------QSG-DIYMWEVAS--GRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDG 144 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 144 (451)
.....|+|.++|+++++-. ..+ .|.+++-.+ |.. ...+.........+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999877642 223 677776543 322 23343334456889999888 444 44443
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccC----CcCceeEEEEeecCCeeEEEEeeC-------------------CCcE
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTG----HTLRITDIVIGYGGVSATIVSASE-------------------DRTC 201 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~~l~s~~~-------------------d~~i 201 (451)
..++.|........ ......+..+.. +......++|.+++ .+.++.+. .|.|
T Consensus 92 i~~~~d~~gdg~ad---~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 92 ILFLRDKDGDDKAD---GEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred EEEEeCCCCCCCCC---CccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceeccCCCccCcccccCceE
Confidence 33333442210000 001112222322 23456788898887 55444331 1445
Q ss_pred EEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996 202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (451)
.-++...++. ..+. .-.....++|+|+|+++++-..+
T Consensus 167 ~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 167 FRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 5556554432 2333 22345689999999887765433
No 424
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.09 E-value=0.96 Score=42.69 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=90.0
Q ss_pred CCeeEEEECCCCcEE-EEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccC----CcEEEEeeCCCcEEEeeCcc
Q 012996 81 EPIKPIAANSHGTYI-AGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~~ 153 (451)
.++..++|.. |+.+ .+.- .+|.+++=| ...+ +.-..|..+.|.|- ...|++......|.||.+-.
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4788999974 5444 3321 233333322 1223 33356889999983 33456666778999999842
Q ss_pred hhhhhhhhcccccceecccC-----CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--CceeeeeecccceeEEEE
Q 012996 154 VFEECESQRASHLYLHSFTG-----HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRLLRNIVFPSVIDAIAL 226 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~i~~~~~ 226 (451)
... ...+.+..... ...--.++.|+|.. ..|+.-.....-.+++++. .+....+...+.|.|.||
T Consensus 92 s~~------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 92 STT------ERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACW 163 (671)
T ss_pred Ccc------ccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEe
Confidence 111 11111111111 11122456788887 6666666655555666653 344445567889999999
Q ss_pred CCCCCEEEEEeCC-CcEEEEEccCC
Q 012996 227 DPAEHVFYAGSRD-GSIYIAALNAE 250 (451)
Q Consensus 227 ~~~~~~l~~~~~d-g~i~i~d~~~~ 250 (451)
.+||..|+++-.. =.-++||-...
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecCchh
Confidence 9999988876433 35778886554
No 425
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.03 E-value=1.1 Score=40.54 Aligned_cols=208 Identities=17% Similarity=0.217 Sum_probs=116.0
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc----cCCcE--EEEeeC-C---CcEEEeeCcchhhhhh
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS----EDGSF--LISGSE-D---GCVRIWSLLTVFEECE 159 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~s~~~-d---g~i~vwd~~~~~~~~~ 159 (451)
|...+++....++-+.+||+ .|+.+..+. .+.++.+..- -+|+. |+.++. + ..|++|.+........
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~ 142 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT 142 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence 45567777788888999997 466666663 2334433321 13433 444443 2 4699998842100000
Q ss_pred hhcccccceecccCCcCceeEEEEeecC--CeeEEEEeeCCCcEEEEEcC---CC----ceeeeeecccceeEEEECCCC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGG--VSATIVSASEDRTCKVWSLL---KG----RLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~--~~~~l~s~~~d~~i~iwd~~---~~----~~~~~~~~~~~i~~~~~~~~~ 230 (451)
.......+ +......++.+|+..+. ..-+++....+|.+..|.+. .+ +.++.|...+.+..|..+...
T Consensus 143 ~v~~~~~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~ 219 (381)
T PF02333_consen 143 DVTDPAAP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDET 219 (381)
T ss_dssp E-CBTTC----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTT
T ss_pred EcCCCCcc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEeccc
Confidence 00000000 11122346788875432 22577788899988888764 23 467888888899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cCCcceeEEEEec----CCEEEEEc-CCCcEEEEeCCC-Cce
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVTCLAYST----GDLLISGS-EDGMVRVWDPIT-HNI 302 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~----~~~l~s~~-~dg~i~iwd~~~-~~~ 302 (451)
..|+.+-.+.-|.-|+........ ...+.... .....|-.|++-. ..||++++ .+++..||+... ...
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~ 295 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAY 295 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--E
T ss_pred CCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcc
Confidence 999999999888888876543211 12232222 2346777887753 23555555 577899999764 344
Q ss_pred EEEee
Q 012996 303 VRMFR 307 (451)
Q Consensus 303 ~~~~~ 307 (451)
+..|.
T Consensus 296 ~g~f~ 300 (381)
T PF02333_consen 296 VGSFR 300 (381)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 55554
No 426
>PRK10115 protease 2; Provisional
Probab=95.96 E-value=2.1 Score=43.03 Aligned_cols=70 Identities=13% Similarity=0.092 Sum_probs=46.1
Q ss_pred CeeEEEECCCCcEEEEecc-----CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC------CcEEEee
Q 012996 82 PIKPIAANSHGTYIAGGGQ-----SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED------GCVRIWS 150 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd 150 (451)
.+..+.++|||++|+.+.. .-.|++.|+.+|..+...-.... ..++|++|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999999887532 23488999988864432211211 459999998877655442 3567777
Q ss_pred Ccc
Q 012996 151 LLT 153 (451)
Q Consensus 151 ~~~ 153 (451)
+.+
T Consensus 206 lgt 208 (686)
T PRK10115 206 IGT 208 (686)
T ss_pred CCC
Confidence 755
No 427
>PRK10115 protease 2; Provisional
Probab=95.88 E-value=2.2 Score=42.79 Aligned_cols=110 Identities=5% Similarity=-0.056 Sum_probs=66.6
Q ss_pred eEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC------CCEEEEE
Q 012996 39 LACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS------GDIYMWE 108 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd 108 (451)
+.... ++|+|++++.+...+ ..|++-|+.++........... ..++|++|++.|+....+ ..|+.++
T Consensus 129 l~~~~--~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMA--ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEE--ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 34444 899999988764432 4688999987753322222222 569999999877665432 3578888
Q ss_pred cCCC--cceeeeccccCCee-EEEEccCCcEEEEeeC---CCcEEEeeC
Q 012996 109 VASG--RLLKKWHAHYRAVT-CLVFSEDGSFLISGSE---DGCVRIWSL 151 (451)
Q Consensus 109 ~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~---dg~i~vwd~ 151 (451)
+.++ +....+........ .+..+.++++++..+. ++.+.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 8877 33334443333333 3333447777664433 456888885
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.88 E-value=2.3 Score=42.84 Aligned_cols=269 Identities=12% Similarity=0.093 Sum_probs=135.5
Q ss_pred cCcccCCCC-CCccEEEEECCCCcee---eeecCCCCeeEEE--ECCC-CcEEEEeccCCCEEEEEcCCCccee-eeccc
Q 012996 50 SQLREQPSA-SSGSILYWSWSKPQVE---VKSLPAEPIKPIA--ANSH-GTYIAGGGQSGDIYMWEVASGRLLK-KWHAH 121 (451)
Q Consensus 50 ~~~l~~~~~-d~g~i~vw~~~~~~~~---~~~~~~~~v~~~~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~ 121 (451)
++.+.++|. .||++++..-.-+-.. .....-..+..+. +.++ .++|+.+-.+ .-++..+.. +... ...+-
T Consensus 370 ~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~-eTrvl~i~~-e~ee~~~~gf 447 (1096)
T KOG1897|consen 370 GQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFIS-ETRVLNISE-EVEETEDPGF 447 (1096)
T ss_pred ceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEecc-ceEEEEEcc-ceEEeccccc
Confidence 344433333 3599999874322111 1112234566666 4331 2366665443 445555432 2111 11222
Q ss_pred cCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 122 YRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 122 ~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
......+..+. .++.|+=...+ .|++++-.. ....+.. +..++....+.+. ..++.++.++.
T Consensus 448 ~~~~~Tif~S~i~g~~lvQvTs~-~iRl~ss~~-------------~~~~W~~-p~~~ti~~~~~n~--sqVvvA~~~~~ 510 (1096)
T KOG1897|consen 448 STDEQTIFCSTINGNQLVQVTSN-SIRLVSSAG-------------LRSEWRP-PGKITIGVVSANA--SQVVVAGGGLA 510 (1096)
T ss_pred cccCceEEEEccCCceEEEEecc-cEEEEcchh-------------hhhcccC-CCceEEEEEeecc--eEEEEecCccE
Confidence 23333344433 34444433333 577776521 1222222 3334444444444 57777777787
Q ss_pred EEEEEcCCCceeee--eecccceeEEEECCCC------CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 201 CKVWSLLKGRLLRN--IVFPSVIDAIALDPAE------HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 201 i~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
+...++..+..... ......|.|+.++|-+ +++++|..+..+.+.-...... ........-..-.
T Consensus 511 l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~-------~~~~~~l~~~~iP 583 (1096)
T KOG1897|consen 511 LFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI-------LITHEQLSGEIIP 583 (1096)
T ss_pred EEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc-------eeeeeccCCCccc
Confidence 87777776653222 2267889999999842 3788898877655543322210 1111111122222
Q ss_pred eEEEEe---c-CCEEEEEcCCCcEEEE--eCCCCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 273 TCLAYS---T-GDLLISGSEDGMVRVW--DPITHNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 273 ~~~~~~---~-~~~l~s~~~dg~i~iw--d~~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
.++-+. . ..+|.++..||.+.-| |..++..-..-+ ....|+.--.|+..++.-+-+..|....+|..++...
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv 663 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLV 663 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEE
Confidence 333333 3 5799999999998766 444554332222 2244666667776555444444566666666555443
No 429
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.82 E-value=2.3 Score=42.52 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcch-hhhhhhhcccc-cceec--------ccCCcCceeEEEEeecC-CeeE
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV-FEECESQRASH-LYLHS--------FTGHTLRITDIVIGYGG-VSAT 191 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~-~~~~~--------~~~~~~~i~~i~~~~~~-~~~~ 191 (451)
-.|..|.++|+|++++..|..| |.|..+... ........... ...++ ...+...|..+.|+|.+ .+..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999888865 555555321 00000000000 01111 12456788999999975 2478
Q ss_pred EEEeeCCCcEEEEEcCCC
Q 012996 192 IVSASEDRTCKVWSLLKG 209 (451)
Q Consensus 192 l~s~~~d~~i~iwd~~~~ 209 (451)
|+.-+.|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999754
No 430
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.017 Score=56.19 Aligned_cols=137 Identities=14% Similarity=0.237 Sum_probs=84.5
Q ss_pred CCeEEEECc--cCceeeee-----ecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeE
Q 012996 13 TGIGCWDLE--SGAEQLRY-----KSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP 85 (451)
Q Consensus 13 g~i~vwd~~--~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~ 85 (451)
|.+.|||+. .|+....+ ......+..|.... |.++..++..+-.+ ++|++.++++........|...+..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp--~~~~~~~ic~~~~~-~~i~lL~~~ra~~~l~rsHs~~~~d 229 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCP--IAVNKVYICYGLKG-GEIRLLNINRALRSLFRSHSQRVTD 229 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecc--cccccceeeeccCC-CceeEeeechHHHHHHHhcCCCccc
Confidence 567889876 45443332 22334455666666 77777655555444 9999998876655444346555444
Q ss_pred EE-----------ECCCCcEEEEeccCCCEEEEEcC-----CCcceeeecccc-CCeeEEEEccCC---------cEEEE
Q 012996 86 IA-----------ANSHGTYIAGGGQSGDIYMWEVA-----SGRLLKKWHAHY-RAVTCLVFSEDG---------SFLIS 139 (451)
Q Consensus 86 ~~-----------~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~s 139 (451)
++ .||||..+|.++.||.++.|.+. ...++..++.|. .+-.|.-|+.+. .++++
T Consensus 230 ~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 230 MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 43 58999999999999998888763 335666777777 333333343321 23444
Q ss_pred eeC-CCcEEEeeCc
Q 012996 140 GSE-DGCVRIWSLL 152 (451)
Q Consensus 140 ~~~-dg~i~vwd~~ 152 (451)
++. +..+++|.-.
T Consensus 310 ttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 310 TTDVNREEKFWAEA 323 (1283)
T ss_pred cccCCcceeEeecc
Confidence 443 5568888753
No 431
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.98 Score=36.58 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=101.8
Q ss_pred CCcEEEEeeCC--CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996 133 DGSFLISGSED--GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (451)
Q Consensus 133 ~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 210 (451)
+|.++.+.+.- ..|++||+.++...... .+. ...+.+=-...-++ .+..-.-.+|.-..+|..+.+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~---------~l~--~~~~FgEGit~~gd-~~y~LTw~egvaf~~d~~t~~ 122 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE---------KLA--PDTVFGEGITKLGD-YFYQLTWKEGVAFKYDADTLE 122 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe---------ecC--Cccccccceeeccc-eEEEEEeccceeEEEChHHhh
Confidence 45666666653 46999999764322111 111 01111100111121 333445578888999999999
Q ss_pred eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCCEEEEEcCC
Q 012996 211 LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGDLLISGSED 289 (451)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~s~~~d 289 (451)
.+..+..++.-..++. ++..|+.+.....++.-|..+..... ....+..+. -..++-+.|-.|...|-.=.+
T Consensus 123 ~lg~~~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~-----~v~VT~~g~pv~~LNELE~VdG~lyANVw~t 195 (262)
T COG3823 123 ELGRFSYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELD-----TVQVTDDGVPVSKLNELEWVDGELYANVWQT 195 (262)
T ss_pred hhcccccCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcc-----eEEEEECCeecccccceeeeccEEEEeeeee
Confidence 9998888887777765 44557666666667776665532111 111122111 123344555555555555566
Q ss_pred CcEEEEeCCCCceEEEee------------cCCCCeeEEEEEecC-ceeeec
Q 012996 290 GMVRVWDPITHNIVRMFR------------LAKGPVNNILVVRRP-LYLNLG 328 (451)
Q Consensus 290 g~i~iwd~~~~~~~~~~~------------~~~~~v~~l~~s~~~-~~l~~~ 328 (451)
..|...|..+|+.+..+. .|..-.+.+++.|++ +++++|
T Consensus 196 ~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 196 TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 667777888888777665 234467889999977 566665
No 432
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.47 E-value=0.21 Score=45.83 Aligned_cols=143 Identities=12% Similarity=0.129 Sum_probs=88.9
Q ss_pred EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC-------EEEEEeCCCcEEEEEccCCCC
Q 012996 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH-------VFYAGSRDGSIYIAALNAESP 252 (451)
Q Consensus 180 ~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i~i~d~~~~~~ 252 (451)
-+-.+....+-++..|+....++-.|+..|+.+........+ -+.|.|..+ .-++|-.+..|.-.|.+....
T Consensus 471 K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN 549 (776)
T COG5167 471 KIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN 549 (776)
T ss_pred hceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCC
Confidence 333333333234456667778888999999999988866666 677887532 234555666666666655431
Q ss_pred CCCCCCceeeeeecc--CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 253 STSSYGMHIIGSLSD--HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 253 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
.. .+..... ......+..-....++++||..|-|++||--.-+--..+.+....|..+..+.+|.++++.+
T Consensus 550 Ki------~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 550 KI------KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ce------eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 00 0111110 11122222222267999999999999999554444445666677899999999999886655
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.46 E-value=0.66 Score=46.23 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=52.8
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEccCC-CCCC----CCCCcee----ee---eeccCCcceeEEEEec----CCE
Q 012996 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAE-SPST----SSYGMHI----IG---SLSDHSKAVTCLAYST----GDL 282 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~----~~~~~~~----~~---~~~~~~~~v~~~~~~~----~~~ 282 (451)
-.|..+.++|+|.+++..|..|. .+..+... .... ......+ +. ....+...|..+.|+| +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46889999999999999888664 44444321 1000 0000010 00 0123456899999999 479
Q ss_pred EEEEcCCCcEEEEeCCCC
Q 012996 283 LISGSEDGMVRVWDPITH 300 (451)
Q Consensus 283 l~s~~~dg~i~iwd~~~~ 300 (451)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.46 E-value=0.89 Score=44.62 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=92.4
Q ss_pred CcEEEEeccCCCEEEEEcCCCccee------eec----------------cccCCeeEEEEcc--CCcEEEEeeCCCcEE
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLK------KWH----------------AHYRAVTCLVFSE--DGSFLISGSEDGCVR 147 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~----------------~~~~~v~~~~~~~--~~~~l~s~~~dg~i~ 147 (451)
+++++++. .+.|.||+........ .+. .....|+.|.... +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666654 5689999875432211 100 0112344554433 456789999999999
Q ss_pred EeeCcchhhhhhhhc---------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--cee--ee
Q 012996 148 IWSLLTVFEECESQR---------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLL--RN 214 (451)
Q Consensus 148 vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~--~~ 214 (451)
+|.+++......... ....+...+. -...+++++++.....++||+++....|.||-+... +.. ..
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 998865432221110 0011111222 344788899882222388889888888888765432 111 12
Q ss_pred eecccceeEEEECCCC---C---EEEEEeCCCcEEEEEc
Q 012996 215 IVFPSVIDAIALDPAE---H---VFYAGSRDGSIYIAAL 247 (451)
Q Consensus 215 ~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 247 (451)
..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3466789999997743 2 7788899999999888
No 435
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.43 E-value=1.5 Score=37.74 Aligned_cols=151 Identities=17% Similarity=0.087 Sum_probs=85.5
Q ss_pred CeeEEEEccCCcEEEEee---CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 124 AVTCLVFSEDGSFLISGS---EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
.+.+.+++++++.++... ....+.++.... ....... ...+..-.|++++ ...+....+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~------------~~~~~~~--g~~l~~PS~d~~g--~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG------------PVRPVLT--GGSLTRPSWDPDG--WVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC------------cceeecc--CCccccccccCCC--CEEEEEcCCCc
Confidence 688999999998877655 233455555422 1111112 2255566777775 55555555666
Q ss_pred EEEEE-cCCCceee-eee---cccceeEEEECCCCCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 201 CKVWS-LLKGRLLR-NIV---FPSVIDAIALDPAEHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 201 i~iwd-~~~~~~~~-~~~---~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
.+++. ...+.... ... ....|..+.++|+|..++... .++.|++--+.............+..........+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV 168 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence 66663 33333221 222 112899999999999888765 35778877664432211111112222233345789
Q ss_pred eEEEEec-CCEEEEEcCCC
Q 012996 273 TCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 273 ~~~~~~~-~~~l~s~~~dg 290 (451)
+.+.|.+ +.+++.+...+
T Consensus 169 ~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred eeeeecCCCEEEEEeCCCC
Confidence 9999999 66655554433
No 436
>PRK13684 Ycf48-like protein; Provisional
Probab=95.11 E-value=2.5 Score=38.28 Aligned_cols=153 Identities=8% Similarity=0.063 Sum_probs=81.1
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
.+.+.++.+.|++.+++++ ..|.+.. ++- ...........-...++++.+.+++ ..+++ +..|.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-----------gg~tW~~~~~~~~~~l~~i~~~~~g--~~~~v-g~~G~ 236 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-----------GQTAWTPHQRNSSRRLQSMGFQPDG--NLWML-ARGGQ 236 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-----------CCCeEEEeeCCCcccceeeeEcCCC--CEEEE-ecCCE
Confidence 4578899999988766554 4455443 221 1111111122334577888888876 55554 45676
Q ss_pred EEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996 201 CKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 201 i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 275 (451)
+++=....+..-..... ...+.++.+.|++..++ ++.+|.+.. ..+.+. .+..+.....-....+.+
T Consensus 237 ~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~------tW~~~~~~~~~~~~~~~~ 308 (334)
T PRK13684 237 IRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGK------TWEKDPVGEEVPSNFYKI 308 (334)
T ss_pred EEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCC------CCeECCcCCCCCcceEEE
Confidence 65323334433222221 23477889998777555 455675553 333322 112221111223467777
Q ss_pred EEecCCEEEEEcCCCcEEEEeC
Q 012996 276 AYSTGDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 276 ~~~~~~~l~s~~~dg~i~iwd~ 297 (451)
.|..+...+..+..|.|.-|+-
T Consensus 309 ~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 309 VFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred EEeCCCceEEECCCceEEEecC
Confidence 7776334455667888887763
No 437
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.89 E-value=1.1 Score=42.42 Aligned_cols=148 Identities=15% Similarity=0.316 Sum_probs=91.0
Q ss_pred CCeeEEEEccCCcE-EEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe--eEEEEeeC
Q 012996 123 RAVTCLVFSEDGSF-LISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS--ATIVSASE 197 (451)
Q Consensus 123 ~~v~~~~~~~~~~~-l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--~~l~s~~~ 197 (451)
.++..++|. ||+. +++.- .+|.+++=|- ..-+.-..|.++.|.|.+.. ..+++...
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------------------~viGqFEhV~GlsW~P~~~~~~paLLAVQH 80 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------------------KVIGQFEHVHGLSWAPPCTADTPALLAVQH 80 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc------------------cEeeccceeeeeeecCcccCCCCceEEEec
Confidence 478899998 4544 44432 2344443332 11234456888999875321 35666677
Q ss_pred CCcEEEEEcCC-----Cceeee----ee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 198 DRTCKVWSLLK-----GRLLRN----IV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 198 d~~i~iwd~~~-----~~~~~~----~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
...|.+|.+.- ++.+.. +. .+--...+.|+|....|++-+....-.+++.+... ..+..-.
T Consensus 81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--------srVkaDi 152 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--------SRVKADI 152 (671)
T ss_pred cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--------ceEEEec
Confidence 88999998852 222221 11 23334578899999999988777666677766543 2232223
Q ss_pred cCCcceeEEEEec-CCEEEEE-cCCCcEEEEeC
Q 012996 267 DHSKAVTCLAYST-GDLLISG-SEDGMVRVWDP 297 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~ 297 (451)
...+.|.|.+|.+ |..|+++ +..=.-+|||-
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 4568899999999 7766665 33334677873
No 438
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.82 E-value=2.6 Score=37.15 Aligned_cols=188 Identities=13% Similarity=0.161 Sum_probs=91.0
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCC-cc-eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASG-RL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
...+....++..+++ +..|.| |...++ +. ......-.+.+..+.-++||+++++++.-..+.-||.-.
T Consensus 106 ~~~i~~l~~~~~~l~-~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~------- 175 (302)
T PF14870_consen 106 PFGITALGDGSAELA-GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQ------- 175 (302)
T ss_dssp EEEEEEEETTEEEEE-ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--------
T ss_pred eeEEEEcCCCcEEEE-cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCC-------
Confidence 344444444444444 334544 333333 22 222344457788899999999888887655566787621
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeee----e-ecccceeEEEECCCCCEEE
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRN----I-VFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~----~-~~~~~i~~~~~~~~~~~l~ 234 (451)
.............|.++.|.+++ .+.+ ....|.|+.=+.. ..+.-.. + .....+..++|.+++...+
T Consensus 176 ----~~w~~~~r~~~~riq~~gf~~~~--~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa 248 (302)
T PF14870_consen 176 ----TTWQPHNRNSSRRIQSMGFSPDG--NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWA 248 (302)
T ss_dssp ----SS-EEEE--SSS-EEEEEE-TTS---EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEE
T ss_pred ----ccceEEccCccceehhceecCCC--CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEE
Confidence 22222233356789999999986 4444 4488888888722 2222111 1 1233478999999887777
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw 295 (451)
+|+. |.+ +...+.++ .++.......-...++.|.|.+.+.-.+.+.+|.|.-|
T Consensus 249 ~gg~-G~l-~~S~DgGk------tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 249 VGGS-GTL-LVSTDGGK------TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEST-T-E-EEESSTTS------S-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EeCC-ccE-EEeCCCCc------cceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 6654 433 33333332 12333333334567888888774445555678877655
No 439
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=2.1 Score=44.48 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=85.1
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEe---cceEeeccCcccCCCCCCccEEEEECCCCc----eee-----ee-
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACV---GQRFLASSQLREQPSASSGSILYWSWSKPQ----VEV-----KS- 77 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~-----~~- 77 (451)
.|..+.+|+.+++.....+.+....+-.|.-+ ++-|.|.=+++++.+.. -.|.++-+.... ... ..
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCcccccccceeee
Confidence 57899999999987777776544332222222 13466666776666555 677777654222 111 11
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEc----CCC---c-c----------------eeeec-cccCCeeEEEEcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV----ASG---R-L----------------LKKWH-AHYRAVTCLVFSE 132 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~ 132 (451)
..+-.|.|+....+|+.+++| .||. +|.+ .++ + + +-.+. .+.++|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCC--EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 125578999988899888775 4553 4443 111 0 0 01112 4566788888877
Q ss_pred CCcEEEEeeCCCcEEEeeCcc
Q 012996 133 DGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 133 ~~~~l~s~~~dg~i~vwd~~~ 153 (451)
....+.+-+..|.|.+|++..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 777777777888888888754
No 440
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.65 E-value=0.0053 Score=55.44 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=99.3
Q ss_pred ceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEE-eccCCCEEEEEcCCCccee-eec-c
Q 012996 44 QRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAG-GGQSGDIYMWEVASGRLLK-KWH-A 120 (451)
Q Consensus 44 ~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~-~~~-~ 120 (451)
..|-|.+..++.++.+ ..+..||- .++.......++....++|..++..+++ +-..+.+.+||+.+...-. .+. .
T Consensus 40 ~~w~~e~~nlavaca~-tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~ 117 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACAN-TIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT 117 (615)
T ss_pred eeEecCCCceehhhhh-hHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence 3388888889999887 88888884 4444455556677788999888876544 4567889999987653211 111 1
Q ss_pred ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
|... -+.|++.+..++.+...|.+.+++..+ .........|...++++++.+.+ +.+.++.|..
T Consensus 118 ~s~s--ll~wsKg~~el~ig~~~gn~viynhgt-----------sR~iiv~Gkh~RRgtq~av~lEd---~vil~dcd~~ 181 (615)
T KOG2247|consen 118 SSKS--LLAWSKGTPELVIGNNAGNIVIYNHGT-----------SRRIIVMGKHQRRGTQIAVTLED---YVILCDCDNT 181 (615)
T ss_pred chHH--HHhhccCCccccccccccceEEEeccc-----------hhhhhhhcccccceeEEEecccc---eeeecCcHHH
Confidence 2222 278899888899998999999999854 22223334488899999998874 6777777665
Q ss_pred EEEE
Q 012996 201 CKVW 204 (451)
Q Consensus 201 i~iw 204 (451)
+.+-
T Consensus 182 L~v~ 185 (615)
T KOG2247|consen 182 LSVT 185 (615)
T ss_pred HHHh
Confidence 5443
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.55 E-value=1.2 Score=33.38 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=72.0
Q ss_pred EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCCeeEEEEeeCCCcEEE
Q 012996 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKV 203 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~~~d~~i~i 203 (451)
.-.|......|++++.-|.|.|++.......... ....+..+ .-...|++++-.+ +.....|+.|+. ..+..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence 3456666667888889999999998653221111 11122222 2345677776544 333356666654 56999
Q ss_pred EEcCCCceeeeeecccceeEEEECC---CCCEEEEEeCCCcEEEEEccCC
Q 012996 204 WSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 204 wd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
||+.....+.....+..++++.+-. ...-++..+.+..|.-||....
T Consensus 78 YDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 78 YDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred EEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 9999888877777778888887743 2233444444556666665543
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.41 E-value=0.17 Score=29.24 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=25.7
Q ss_pred CCeeEEEECCCC---cEEEEeccCCCEEEEEcCC
Q 012996 81 EPIKPIAANSHG---TYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 81 ~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 111 (451)
+.|.++.|+|+. .+|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888877789999999985
No 443
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.19 E-value=3.7 Score=36.24 Aligned_cols=229 Identities=11% Similarity=0.067 Sum_probs=101.6
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeee--ccc---cCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKW--HAH---YRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~--~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
....++..|.|..+..-+++|.. +. |+...++ +.-... ... .-...+|.|..+ ..+++ +..|. .+...
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g~-ll~T~ 87 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPGL-LLHTT 87 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETTE-EEEES
T ss_pred CCCCceEEEEEecCCEEEEEecC-CE--EEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCce-EEEec
Confidence 34568999999866666777654 43 3444333 211111 111 123567777643 33444 44553 23222
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPA 229 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~ 229 (451)
..+ .....+..-..-++....+....+. ..++. +..|.|+.=. ..|+.-..+. ....+..+..+++
T Consensus 88 DgG--------~tW~~v~l~~~lpgs~~~i~~l~~~--~~~l~-~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~d 155 (302)
T PF14870_consen 88 DGG--------KTWERVPLSSKLPGSPFGITALGDG--SAELA-GDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSD 155 (302)
T ss_dssp STT--------SS-EE----TT-SS-EEEEEEEETT--EEEEE-ETT--EEEES-STTSSEEEEE-S----EEEEEE-TT
T ss_pred CCC--------CCcEEeecCCCCCCCeeEEEEcCCC--cEEEE-cCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCC
Confidence 211 1111111111112233334433333 33333 3444433221 2233222222 3467888889999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe-CCCCceEEE--
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD-PITHNIVRM-- 305 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd-~~~~~~~~~-- 305 (451)
|++++++.......-||-.... +.+.. ..-...|.+|.|+| +.+.+ ....|.|++=+ ....+....
T Consensus 156 G~~vavs~~G~~~~s~~~G~~~-------w~~~~--r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 156 GRYVAVSSRGNFYSSWDPGQTT-------WQPHN--RNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp S-EEEEETTSSEEEEE-TT-SS--------EEEE----SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B
T ss_pred CcEEEEECcccEEEEecCCCcc-------ceEEc--cCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccccccc
Confidence 9999988766666677754421 22222 22457899999999 55544 44888888887 222222222
Q ss_pred --eecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 306 --FRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 306 --~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
+....-.+.+++|.+++...|+|+. |.+.
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~ 256 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL 256 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence 1111224789999998877776654 4443
No 444
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.13 E-value=4.8 Score=37.22 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=42.6
Q ss_pred ccCcccCCCCCCccEEEEECCCC--ceeeee-cC-CCCeeEEEECCCCcEEEEeccCC-----------CEEEEEcCCCc
Q 012996 49 SSQLREQPSASSGSILYWSWSKP--QVEVKS-LP-AEPIKPIAANSHGTYIAGGGQSG-----------DIYMWEVASGR 113 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~--~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~ 113 (451)
++...+.+|..+..+.++|++.. ...... .+ ..........-++.+.+.|+... .+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 45555545554466778887642 221111 11 11111112223566777776532 47788876653
Q ss_pred ceeeeccccCCe--eEEEEccCCcEEEEeeCC
Q 012996 114 LLKKWHAHYRAV--TCLVFSEDGSFLISGSED 143 (451)
Q Consensus 114 ~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d 143 (451)
-...-....... .+.....++++.+.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 222111001111 111221367777777754
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.13 E-value=0.0068 Score=54.81 Aligned_cols=153 Identities=15% Similarity=0.094 Sum_probs=103.5
Q ss_pred ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 121 HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 121 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
+-.......|.+.+.-++.++.+..+..||-.. ..... ...++....++|..+++ ..++.+-..+.
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~ag------------q~~le-~n~tg~aldm~wDkegd-vlavlAek~~p 98 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAG------------QVILE-LNPTGKALDMAWDKEGD-VLAVLAEKTGP 98 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhc------------ceecc-cCCchhHhhhhhccccc-hhhhhhhcCCC
Confidence 333444567888777788888888899998632 11111 12344555677777664 56667778899
Q ss_pred EEEEEcCCCceee-eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 201 CKVWSLLKGRLLR-NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 201 i~iwd~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
+.+||+.+....+ .......-.-+.|++....++.|...|.+.+|+..... .+...-.|...++++++.+
T Consensus 99 iylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR---------~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 99 IYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR---------RIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred eeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchh---------hhhhhcccccceeEEEecc
Confidence 9999997543211 11122222237899999999999999999999988753 2323333899999999999
Q ss_pred CCEEEEEcCCCcEEEEe
Q 012996 280 GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 280 ~~~l~s~~~dg~i~iwd 296 (451)
.++.+.++.|..+.+-.
T Consensus 170 Ed~vil~dcd~~L~v~~ 186 (615)
T KOG2247|consen 170 EDYVILCDCDNTLSVTT 186 (615)
T ss_pred cceeeecCcHHHHHHhh
Confidence 88888888887665544
No 446
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=1.1 Score=46.80 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
......++|+|...++|.|+..|.|++|-..
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEeccc
Confidence 3456788999999999999999999999754
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.00 E-value=0.35 Score=43.80 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=97.5
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-ee-ccccC----Cee-EEEEccCCcEEEEeeCCCcEEEe-eC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KW-HAHYR----AVT-CLVFSEDGSFLISGSEDGCVRIW-SL 151 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~i~vw-d~ 151 (451)
...|..+-..|||+.+.+-+. ..+.|+++.+..... .+ ....+ .|+ .+..-..|.-++.+..||.|.-| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 456778888999998877555 578888876543221 11 11111 122 22223346668888999999887 55
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
+.... .....++.++-...++.-+ .|+...+-+++-+..|++..+.....+.+-.-..-..+.-+++||.+.
T Consensus 299 r~~~~------p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 299 RRDGQ------PHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQA 370 (733)
T ss_pred ecCCC------CcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccc
Confidence 43111 1112222333223333322 244444678888888998888755444433323334677889999999
Q ss_pred EEEEEeCCCcEEEEEccCCCC
Q 012996 232 VFYAGSRDGSIYIAALNAESP 252 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~ 252 (451)
++++- +.|.|+++.+.+..+
T Consensus 371 ~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred hheee-cCCceEEEEecCCCC
Confidence 98864 457899999888665
No 448
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.87 E-value=3.1 Score=34.18 Aligned_cols=107 Identities=16% Similarity=0.169 Sum_probs=64.0
Q ss_pred EEEEeeCCCcEEEEEcC--CCceeeeeecccceeEEEECCCCCEEEEEeCCC------cEEEE-EccCCCCCCC------
Q 012996 191 TIVSASEDRTCKVWSLL--KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------SIYIA-ALNAESPSTS------ 255 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~-d~~~~~~~~~------ 255 (451)
.|+.+.....|.+|++. ..+....+..-+.|..+.++..|+++++--.+. .+|+| +.+.......
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44444667789999988 345667777778999999999999999864322 45554 2221100000
Q ss_pred -----------CCC-ceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCC
Q 012996 256 -----------SYG-MHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 256 -----------~~~-~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~ 300 (451)
... .-.+-.+. -..++.+++-.| |++++ |+ ++++.+|.+...
T Consensus 110 aG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQ 165 (215)
T ss_pred cccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEE
Confidence 000 00111121 245778888888 66555 33 567888876543
No 449
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.53 E-value=0.36 Score=27.91 Aligned_cols=30 Identities=37% Similarity=0.578 Sum_probs=25.7
Q ss_pred cceeEEEEec--C--CEEEEEcCCCcEEEEeCCC
Q 012996 270 KAVTCLAYST--G--DLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 270 ~~v~~~~~~~--~--~~l~s~~~dg~i~iwd~~~ 299 (451)
+.|.++.|+| + ++|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999997 4 6888888889999999985
No 450
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.53 E-value=5.8 Score=36.16 Aligned_cols=40 Identities=3% Similarity=-0.009 Sum_probs=19.4
Q ss_pred CcEEEEEcCCCceeeeeeccc--ceeEEEECCCCCEEEEEeC
Q 012996 199 RTCKVWSLLKGRLLRNIVFPS--VIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~ 238 (451)
..+.+||..+.+-...-..+. .....+..-++++++.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 457888987764333212111 1111122235667777764
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.52 E-value=1.5 Score=40.68 Aligned_cols=139 Identities=12% Similarity=0.137 Sum_probs=84.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcc-------cCCCCCCccEEEEECC--CCce
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLR-------EQPSASSGSILYWSWS--KPQV 73 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------~~~~~d~g~i~vw~~~--~~~~ 73 (451)
+++..|+ ....+.=-|++.|+.+..+..+... .+. |.|..++- ++|-++ ..|.-.|.. .+++
T Consensus 481 li~~dg~-~~~kLykmDIErGkvveeW~~~ddv-----vVq--y~p~~kf~qmt~eqtlvGlS~-~svFrIDPR~~gNKi 551 (776)
T COG5167 481 LIYLDGG-ERDKLYKMDIERGKVVEEWDLKDDV-----VVQ--YNPYFKFQQMTDEQTLVGLSD-YSVFRIDPRARGNKI 551 (776)
T ss_pred eEEecCC-CcccceeeecccceeeeEeecCCcc-----eee--cCCchhHHhcCccceEEeecc-cceEEecccccCCce
Confidence 4455566 6777778888999998888765422 222 55543221 122222 333333332 1111
Q ss_pred eeeec----CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 74 EVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 74 ~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
..... ......|..-. ...|+|+|+..|.|++||--.-+....+++....|..+..+.+|+++++.+.. .+.+-
T Consensus 552 ~v~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~ 629 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT 629 (776)
T ss_pred eeeeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence 11110 12222333222 35589999999999999965445555667888899999999999998877654 78888
Q ss_pred eCc
Q 012996 150 SLL 152 (451)
Q Consensus 150 d~~ 152 (451)
|+.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 874
No 452
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.50 E-value=6.1 Score=36.39 Aligned_cols=199 Identities=17% Similarity=0.136 Sum_probs=104.6
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccc--cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccce
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAH--YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL 168 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 168 (451)
+++ +.++..+|.|.-.|..++..+.....- ...+.+-.+..+|+ ++.++.+|.+..+|.+++.. .
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-----------~ 134 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-----------V 134 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-----------E
Confidence 444 445577888888888888765433222 12233333333665 77888888888888754322 2
Q ss_pred ecccCCc-CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccc-eeEEEEC--CCCCEEEEEeC--CCcE
Q 012996 169 HSFTGHT-LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSV-IDAIALD--PAEHVFYAGSR--DGSI 242 (451)
Q Consensus 169 ~~~~~~~-~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-i~~~~~~--~~~~~l~~~~~--dg~i 242 (451)
-...... ..+..-.+..+ ..++.++.++.+...|..++........+.. -.....+ .....++.+.. ++.+
T Consensus 135 W~~~~~~~~~~~~~~v~~~---~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~ 211 (370)
T COG1520 135 WSRNVGGSPYYASPPVVGD---GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGIL 211 (370)
T ss_pred EEEecCCCeEEecCcEEcC---cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceE
Confidence 2111111 11111122222 3455555788999999888888776554321 1111111 23445555555 5666
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcc--eeEEEEec---CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKA--VTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
.-.|..++........ ....+.... ...+...+ +.-+..++.+|.+...|..+++.+-.+...
T Consensus 212 ~a~~~~~G~~~w~~~~----~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 212 YALNAEDGTLKWSQKV----SQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EEEEccCCcEeeeeee----ecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 6667666543221100 001111100 01111111 344566777888889999999998888764
No 453
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.41 E-value=6 Score=36.03 Aligned_cols=95 Identities=16% Similarity=0.191 Sum_probs=42.2
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeec---C-CCCeeEEEECCCCcEEEEeccC-----------CCEEEEEcCCCc
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSL---P-AEPIKPIAANSHGTYIAGGGQS-----------GDIYMWEVASGR 113 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~ 113 (451)
++...+++|.....+..+|++......... + ..........-++.+.+.|+.+ ..+..||..+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 345555555443567777764322111111 1 1111111222356777777653 247778876654
Q ss_pred ceeeeccccCCeeEE-EE-ccCCcEEEEeeCC
Q 012996 114 LLKKWHAHYRAVTCL-VF-SEDGSFLISGSED 143 (451)
Q Consensus 114 ~~~~~~~~~~~v~~~-~~-~~~~~~l~s~~~d 143 (451)
-............+. .. .-+++..+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 222111111111111 11 2367777777764
No 454
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.24 E-value=4.4 Score=37.25 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=76.8
Q ss_pred ceeEEEEeecCCeeEEEEee-----------CCC-cEEEEEcCC--Cce--eeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996 177 RITDIVIGYGGVSATIVSAS-----------EDR-TCKVWSLLK--GRL--LRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~-----------~d~-~i~iwd~~~--~~~--~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (451)
....|+|.+++ +++++-. ..+ .|.+++-.+ ++. ...+. .-.....+++.+++ |+++...
T Consensus 15 ~P~~ia~d~~G--~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERG--RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCceeeECCCC--CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCC
Confidence 34567887776 5555532 223 677776543 322 22232 23345788998888 5555544
Q ss_pred CcEEEEEccCCCCCCCCCCceeeeeecc----CCcceeEEEEec-CCEEEEEcCC-------------------CcEEEE
Q 012996 240 GSIYIAALNAESPSTSSYGMHIIGSLSD----HSKAVTCLAYST-GDLLISGSED-------------------GMVRVW 295 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~l~s~~~d-------------------g~i~iw 295 (451)
...++.|........ ......+..+.. +......+.|.| |.+.++-+.. |.|.-+
T Consensus 91 ~i~~~~d~~gdg~ad-~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 DILFLRDKDGDDKAD-GEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred eEEEEeCCCCCCCCC-CccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 433344544321110 000011222222 235578899999 7665554421 445556
Q ss_pred eCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 296 DPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+...++. ..+.........++|+|+|.++++-.
T Consensus 170 ~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 6554443 23322233457899999998877644
No 455
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.98 E-value=0.99 Score=37.82 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=38.4
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeee---------------cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIV---------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
.++++.+.+|.+++||+.+++.+..-. ....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 789999999999999999887654331 123455666665555544433 35566665543
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=2.9 Score=33.98 Aligned_cols=108 Identities=12% Similarity=0.015 Sum_probs=59.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.+.-+|-+....|++||+.+|+.+.+-... +..+..-+ ...-|.++..-...+|....+|.++-+..-...-.+.
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~---~~~~FgEG--it~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLA---PDTVFGEG--ITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecC---Cccccccc--eeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 344555545567999999999988765433 11222111 2222333333333347778888776655444333444
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 117 (451)
=..++. |+..|+.+.....++.-|.++.....+
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhcce
Confidence 444443 455566666666777777765544433
No 457
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.47 E-value=14 Score=37.75 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=51.3
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC----CCceeeeeec------cCCcceeEEEEec-CCEEEEE
Q 012996 218 PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLS------DHSKAVTCLAYST-GDLLISG 286 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~------~~~~~v~~~~~~~-~~~l~s~ 286 (451)
+..|.+++...-+.+++....||.|.++|-.+.+..... .....+..+. .+-.++..++||| +..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 456778888888889999999999999998876443222 1111111111 1122455688999 8888888
Q ss_pred cCCCcEE
Q 012996 287 SEDGMVR 293 (451)
Q Consensus 287 ~~dg~i~ 293 (451)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888865
No 458
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.19 E-value=0.89 Score=38.11 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=54.2
Q ss_pred eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEec-CCEEEEEc
Q 012996 214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.+..+.++..+ ..++.++++-+.+|.+++||+.+.+.........++-.. ......|..+.++. |.-+++-+
T Consensus 8 ~i~Lgs~~~~l--~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 8 PIVLGSPVSFL--ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred cEecCCceEEE--EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 34445555444 457888999999999999999987654333221111110 03556788888888 66666554
Q ss_pred CCCcEEEEeCCCC
Q 012996 288 EDGMVRVWDPITH 300 (451)
Q Consensus 288 ~dg~i~iwd~~~~ 300 (451)
+|..+.|+..-+
T Consensus 86 -ng~~y~y~~~L~ 97 (219)
T PF07569_consen 86 -NGDSYSYSPDLG 97 (219)
T ss_pred -CCCEEEeccccc
Confidence 578888886543
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.14 E-value=5.8 Score=32.65 Aligned_cols=179 Identities=17% Similarity=0.179 Sum_probs=90.1
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccCCcEEEEeeCCC------cEEEe-eCcch
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG------CVRIW-SLLTV 154 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg------~i~vw-d~~~~ 154 (451)
..+.-++. ..|+.+...+.|.+|++. ..+.+.+|.. -+.|..+.++..|++|+|--.+. .+++| +.+.
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~- 97 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS- 97 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh-
Confidence 34444432 344443556789999998 3345566653 38899999999999999864432 45554 2211
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (451)
. .....++.. ... | .-++++..+.. ...-.+-.++...++.+++..|...-|+
T Consensus 98 -------------~---~~~~~~v~v-Ria--G---~~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~Ll 150 (215)
T PF14761_consen 98 -------------Q---KEENSPVRV-RIA--G---HRVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLL 150 (215)
T ss_pred -------------h---cccCCcEEE-EEc--c---cccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEE
Confidence 0 011112211 000 0 01111111111 1112233444667888999999555555
Q ss_pred EEeCCCcEEEEEccCCCCCCCC---CCceeeeeeccCC--cceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996 235 AGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHS--KAVTCLAYSTGDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~--~~v~~~~~~~~~~l~s~~~dg~i~iwd~ 297 (451)
+|+ ++.+.+|.+......... .++. ..+-.|. -.+..+++. ++|+|..+. -.++++.+
T Consensus 151 Vg~-~~~l~lf~l~~~~~~~~~~~~lDFe--~~l~~~~~~~~p~~v~ic-~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 151 VGC-GNKLVLFTLKYQTIQSEKFSFLDFE--RSLIDHIDNFKPTQVAIC-EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred EEc-CCEEEEEEEEEEEEecccccEEech--hhhhheecCceEEEEEEE-eeEEEEecC-CEEEEEEE
Confidence 555 467888887664321100 0010 1111121 234556665 677777654 44666544
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.05 E-value=8.9 Score=34.54 Aligned_cols=108 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred CCcEEEEeccCC-----CEEEEEcCCCcc---eeeeccccCCe--eEEEEccCCcEEEEeeCC-----CcEEEeeCcchh
Q 012996 91 HGTYIAGGGQSG-----DIYMWEVASGRL---LKKWHAHYRAV--TCLVFSEDGSFLISGSED-----GCVRIWSLLTVF 155 (451)
Q Consensus 91 ~~~~l~~~~~dg-----~i~iwd~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~ 155 (451)
++.+++.|+.++ .+..||+.+.+- ...+..-..+. .+++. -++++.+.|+.. ..+..||+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~-- 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLET-- 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCC--
Confidence 456667776542 466777766542 11111111111 12222 246666666642 3577788754
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEEEEcCCCce
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRL 211 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~ 211 (451)
.....+..+.... .....+...++ .+.+.|+.++ .+.+||+.+.+-
T Consensus 149 -------~~W~~~~~~p~~~-r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 -------QEWFELPDFPGEP-RVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred -------CCeeECCCCCCCC-CCcceEEEECC--EEEEEcCCCCccccceEEEecCCCee
Confidence 2222222221111 11122223344 6777777654 356888877653
No 461
>PLN02153 epithiospecifier protein
Probab=92.04 E-value=9.3 Score=34.74 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=33.9
Q ss_pred ccCcccCCCCCC----ccEEEEECCCCceeeeec------CCCCeeEEEECCCCcEEEEeccC-----------CCEEEE
Q 012996 49 SSQLREQPSASS----GSILYWSWSKPQVEVKSL------PAEPIKPIAANSHGTYIAGGGQS-----------GDIYMW 107 (451)
Q Consensus 49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~iw 107 (451)
++++.+.||.++ ..+.+||..+........ +.......+..-++++++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 456666666432 357888887765442211 11111111222356667777653 247788
Q ss_pred EcCCCc
Q 012996 108 EVASGR 113 (451)
Q Consensus 108 d~~~~~ 113 (451)
|..+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 877653
No 462
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.90 E-value=4.3 Score=30.54 Aligned_cols=105 Identities=10% Similarity=0.103 Sum_probs=67.2
Q ss_pred eEEEEeeCCCcEEEEEcCC--------CceeeeeecccceeEEEECC-----CCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996 190 ATIVSASEDRTCKVWSLLK--------GRLLRNIVFPSVIDAIALDP-----AEHVFYAGSRDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~--------~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (451)
.-|++++..|.|.|++... ...+..+.....|++++-.+ ....|+.|+ ...+..||.......
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~--- 86 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDL--- 86 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchh---
Confidence 5678888889999998763 33556677788888887654 345566665 567899999876421
Q ss_pred CCceeeeeeccCCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEE
Q 012996 257 YGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRM 305 (451)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~ 305 (451)
-.+.-...|+++.+-. ..-++..+.+..|.=||..-.+...+
T Consensus 87 -------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 87 -------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred -------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 1223346677776643 23444445566777777654444433
No 463
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.89 E-value=14 Score=36.38 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=84.6
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee--eec-cccC------CeeEEEEccCCcEEEEeeC-CC---c
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--KWH-AHYR------AVTCLVFSEDGSFLISGSE-DG---C 145 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-~~~~------~v~~~~~~~~~~~l~s~~~-dg---~ 145 (451)
-.+.|..+.|.++++.+++...+|.|.+||...+.... .+. .+.. -|.....-....++++.+. ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36789999999999999999999999999993332211 111 1111 1222211112345554444 32 3
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccccee---
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--- 222 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~--- 222 (451)
.+++.+.... .....+.....+........|+... ..++-- .+++|.+|++...+...++..+.-+.
T Consensus 208 ykL~~l~~~~-------~~~~El~s~~~e~~~~~~s~f~Y~~--G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~ 277 (670)
T PF10395_consen 208 YKLISLSNES-------SSIFELSSTILENFGLEDSKFCYQF--GKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKES 277 (670)
T ss_pred EEEEEeccCC-------cceEEeehheeccCCcccceEEEeC--CEEEEE-eCCEEEEEEcCCceEEEEEEechhhcccc
Confidence 5566651100 1111111111122222333343332 233333 67899999999888887776442221
Q ss_pred --EEEEC-CCCCEEEEEeCCCcEEEEEccCCC
Q 012996 223 --AIALD-PAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 223 --~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.+.+. |..+.++. +.++.|++.|+.-..
T Consensus 278 ~~~vSl~~~s~nRvLL-s~~nkIyLld~~~~s 308 (670)
T PF10395_consen 278 DDLVSLKPPSPNRVLL-SVNNKIYLLDLKFES 308 (670)
T ss_pred ccceEeecCCCCeEEE-EcCCEEEEEeehhhh
Confidence 12332 23333333 346789999987653
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.81 E-value=11 Score=34.94 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=26.7
Q ss_pred eccCcccCCCCCC----------ccEEEEECCCCceeeeec-CCCCee-EEEEC-CCCcEEEEeccC
Q 012996 48 ASSQLREQPSASS----------GSILYWSWSKPQVEVKSL-PAEPIK-PIAAN-SHGTYIAGGGQS 101 (451)
Q Consensus 48 ~~~~~l~~~~~d~----------g~i~vw~~~~~~~~~~~~-~~~~v~-~~~~~-~~~~~l~~~~~d 101 (451)
-++...+.||... ..+..||..+........ ...... ..+.. -++++.+.|+.+
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3456666666431 247778877655433221 111111 11122 467777887754
No 465
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.81 E-value=13 Score=35.98 Aligned_cols=226 Identities=15% Similarity=0.166 Sum_probs=101.6
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCC-----cceeeec---cccCCeeEEEEcc-----CCcEEEEe--eCCC-
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASG-----RLLKKWH---AHYRAVTCLVFSE-----DGSFLISG--SEDG- 144 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~---~~~~~v~~~~~~~-----~~~~l~s~--~~dg- 144 (451)
..-..++..|.|+.++.+..+|.+.||-++.. .....+. .....|.+++|-. +...|+.- ...+
T Consensus 44 ~~G~~l~vDP~~R~i~v~a~e~~~~v~~l~~~~~~~~~~~~~~~~pi~s~~~i~~~~FL~~~~~~~~p~la~L~~~~~~~ 123 (504)
T PF10433_consen 44 QPGQYLAVDPSGRCIAVSAYEGNFLVYPLNRSLDSDIAFSPHINSPIKSEGNILDMCFLHPSVGYDNPTLAILYVDSQRR 123 (504)
T ss_dssp TT--EEEE-TTSSEEEEEEBTTEEEEEE-SS----T-TT---EEEE--S-SEEEEEEEES---S-SS-EEEEEEEETT-E
T ss_pred cCCcEEEECCcCCEEEEEecCCeEEEEEecccccccccccccccccccCCceEEEEEEEecccCCCCceEEEEEEEeccc
Confidence 34567889999999999999999999998771 0111111 1256778888874 22333332 2222
Q ss_pred -cEEEee--Ccchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--C-ceeeeeec
Q 012996 145 -CVRIWS--LLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--G-RLLRNIVF 217 (451)
Q Consensus 145 -~i~vwd--~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~-~~~~~~~~ 217 (451)
.+..|+ .......... .......+ ..+..+ .-+.-.|.+. ..++.++. +.+.+-+... + .....+..
T Consensus 124 ~~~~~y~w~~~~~l~~~~~---~~~~~~~l~~~~~~p-~~LIPlp~~~-ggllV~~~-~~i~y~~~~~~~~~~~~~~~~~ 197 (504)
T PF10433_consen 124 THLVTYEWSLDDGLNHVIS---KSTLPIRLPNEDELP-SFLIPLPNPP-GGLLVGGE-NIIIYKNHLIGSGDYSFLSIPS 197 (504)
T ss_dssp EEEEEEE--------EETT---TTEEEE--EEEE-TT-EEEEEE-TTT--SEEEEES-SEEEEEE------TTEEEEE--
T ss_pred ceeEEEeeecccccceeee---eccccccccccCCCc-cEEEEcCCCC-cEEEEECC-EEEEEecccccccccccccccC
Confidence 234443 3221110000 00000000 011112 1111123322 23333332 2232222111 1 11122221
Q ss_pred -----ccceeEEE-------ECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEecCC--E
Q 012996 218 -----PSVIDAIA-------LDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYSTGD--L 282 (451)
Q Consensus 218 -----~~~i~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~--~ 282 (451)
..-+.+.. ...++..++.+..+|.++...+..... ......-+. ....+++.+-... +
T Consensus 198 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~-------~i~i~~~g~~~~~~s~l~~l~~g~d~ 270 (504)
T PF10433_consen 198 PPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGG-------SISITYLGTLCSIASSLTYLKNGGDY 270 (504)
T ss_dssp H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEE-------EEEEEEEEE--S-ESEEEEESTT--E
T ss_pred CccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCC-------eEEEEEcCCcCChhheEEEEcCCCEE
Confidence 12233333 345788899999999999988776421 111111122 4556677776644 8
Q ss_pred EEEEcC--CCcEEEEeCCCCceEEEeecCCCCeeEEEEEe
Q 012996 283 LISGSE--DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 283 l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
|+.||. |+.+.-|....-+.+.++.. -+||.++++.+
T Consensus 271 lf~gs~~gds~l~~~~~~~l~~~~~~~N-~~Pi~D~~v~~ 309 (504)
T PF10433_consen 271 LFVGSEFGDSQLLQISLSNLEVLDSLPN-WGPIVDFCVVD 309 (504)
T ss_dssp EEEEESSS-EEEEEEESESEEEEEEE-----SEEEEEEE-
T ss_pred EEEEEecCCcEEEEEeCCCcEEEEeccC-cCCccceEEec
Confidence 888876 55566666555566666654 67999999864
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.32 E-value=11 Score=34.02 Aligned_cols=103 Identities=13% Similarity=0.202 Sum_probs=49.9
Q ss_pred ccCcccCCCCCC----ccEEEEECCCCcee--eeecC--CCCe--eEEEECCCCcEEEEecc-----CCCEEEEEcCCCc
Q 012996 49 SSQLREQPSASS----GSILYWSWSKPQVE--VKSLP--AEPI--KPIAANSHGTYIAGGGQ-----SGDIYMWEVASGR 113 (451)
Q Consensus 49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~--~~~~~--~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~ 113 (451)
++...+.||.++ ..+..+|+.+.... ..... ..+. .+++. -++.+.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 456666666542 35666777665531 11111 1111 12222 24666677664 2358888887654
Q ss_pred ce--eeeccccCCeeEEEEccCCcEEEEeeCCCc----EEEeeCcc
Q 012996 114 LL--KKWHAHYRAVTCLVFSEDGSFLISGSEDGC----VRIWSLLT 153 (451)
Q Consensus 114 ~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~~ 153 (451)
-. ..+... ......+...++++.+.|+.++. +.+||+.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 22 222111 11122222335777777776543 45777754
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.27 E-value=8.7 Score=32.89 Aligned_cols=239 Identities=12% Similarity=0.030 Sum_probs=138.8
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
......++-.|||..-.++...|.|--.|..+|+....--+....-..|...|||..-++-+.. -|.-.|-++...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev--- 136 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV--- 136 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce---
Confidence 4566788889999988888888899999999998877666666667788889988776664443 444455433210
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEe
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~ 237 (451)
.........-........|.+.+ ++-+++.. |.---.|..+ ..+..+. .....+.+|..|+|..-++.-
T Consensus 137 -----t~f~lp~~~a~~nlet~vfD~~G--~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyasl 207 (353)
T COG4257 137 -----TRFPLPLEHADANLETAVFDPWG--NLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASL 207 (353)
T ss_pred -----EEeecccccCCCcccceeeCCCc--cEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEec
Confidence 00111122223455666777776 66666652 2111122211 1222222 344567889999999999888
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee--cCCCCee
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR--LAKGPVN 314 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~ 314 (451)
.+..|-..|...... +.+..-......-..+--+| +..-++-...+.+.-+|..+.. -.++. +....-.
T Consensus 208 agnaiaridp~~~~a-------ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~arpy 279 (353)
T COG4257 208 AGNAIARIDPFAGHA-------EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKARPY 279 (353)
T ss_pred cccceEEcccccCCc-------ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCCcc
Confidence 888888777766532 11111112122333444456 8888887778888888866543 33333 3333444
Q ss_pred EEEEEecCceeeeccCCCCcccccc
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
++.....++.-.+=-..|.|.-+|.
T Consensus 280 s~rVD~~grVW~sea~agai~rfdp 304 (353)
T COG4257 280 SMRVDRHGRVWLSEADAGAIGRFDP 304 (353)
T ss_pred eeeeccCCcEEeeccccCceeecCc
Confidence 5555555544433333344444443
No 468
>PLN02153 epithiospecifier protein
Probab=91.21 E-value=11 Score=34.15 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=13.3
Q ss_pred CCcEEEEeeCC-----CcEEEeeCcc
Q 012996 133 DGSFLISGSED-----GCVRIWSLLT 153 (451)
Q Consensus 133 ~~~~l~s~~~d-----g~i~vwd~~~ 153 (451)
++++++.|+.+ ..+.+||+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t 110 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVK 110 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCC
Confidence 46677777753 2467788754
No 469
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=91.09 E-value=20 Score=36.81 Aligned_cols=250 Identities=12% Similarity=0.024 Sum_probs=124.9
Q ss_pred EECCCCcEEEEeccCCCEEEEEcCCCcc-------e--eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 87 AANSHGTYIAGGGQSGDIYMWEVASGRL-------L--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
.+-++...+++-+.+|.|+-.++.+... . ..++. ...+..+........++..+..|.+...........
T Consensus 491 dli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~ 569 (800)
T TIGR01063 491 DLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEA 569 (800)
T ss_pred hccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCC
Confidence 3445566677778899888776543221 1 11222 234444444445556777777788776655332211
Q ss_pred hhhhcccccce---ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-------eeeeecccceeEEEEC
Q 012996 158 CESQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-------LRNIVFPSVIDAIALD 227 (451)
Q Consensus 158 ~~~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~~~~~~~~i~~~~~~ 227 (451)
.. ......+ ..+.....-+..+.+..-.....++..+.+|.++-.++..-.. ...+.....+..+...
T Consensus 570 ~r--~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke~D~lv~v~~~ 647 (800)
T TIGR01063 570 SR--TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDDGDELISVRLT 647 (800)
T ss_pred Cc--CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCCCCEEEEEEEe
Confidence 00 0111111 1222222233344433222226889999999999887643221 1122223444444444
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-------
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT------- 299 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~------- 299 (451)
.....++..+..|.+..+....-..............+.. ...|.++..-+ +..++..+..|.++...+..
T Consensus 648 ~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~ 726 (800)
T TIGR01063 648 SGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG 726 (800)
T ss_pred CCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCC
Confidence 4556677778888877776654322111111111122322 23344444334 55788888899888776432
Q ss_pred CceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 300 HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 300 ~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
++-+..++ ...+.+..+....+...++..+.+|.+..+...
T Consensus 727 ~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 727 GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 22223332 222344444444444456666667766555543
No 470
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.06 E-value=12 Score=33.95 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=40.7
Q ss_pred ccceeEEEECC-------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 218 PSVIDAIALDP-------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 218 ~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
...+..+.|.. .+.+|++....+.|....+...... ......+......+..+++.| |.+.++-+.+
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV-----TEEEEFLGGFGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-----EEEEEECTTSSS-EEEEEEETTSEEEEEE-TT
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-----cceEEccccCCCCceEEEEcCCCeEEEEECCC
Confidence 34556666643 4456666666678888887644210 011112234445889999999 8888877778
Q ss_pred CcEE
Q 012996 290 GMVR 293 (451)
Q Consensus 290 g~i~ 293 (451)
|.|.
T Consensus 327 G~iy 330 (331)
T PF07995_consen 327 GKIY 330 (331)
T ss_dssp TTEE
T ss_pred CeEe
Confidence 8764
No 471
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=10 Score=39.92 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=23.0
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 227 DPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
++++..++++..||.+.+||...+.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999999864
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.83 E-value=3.6 Score=42.91 Aligned_cols=157 Identities=11% Similarity=0.152 Sum_probs=91.2
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEc--------cCCcEEEEeeCCCcEEEeeCcchh
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFS--------EDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
..+-+-|.=+..-. +.|+.+.+|+.+++.....+.+-...|..+..- |.=++++..+.--.|.++-+.-..
T Consensus 82 ~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 34444443222222 557889999999988787777777777666542 222444444444567777653211
Q ss_pred hhhhhhcccccce--ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc----CCC---c--------------ee
Q 012996 156 EECESQRASHLYL--HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL----LKG---R--------------LL 212 (451)
Q Consensus 156 ~~~~~~~~~~~~~--~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~----~~~---~--------------~~ 212 (451)
... ...... ..+......|.++....+| +.++ ++.||. +|.+ ..+ + .+
T Consensus 161 ~~~----~~~~f~~~~~i~~dg~~V~~I~~t~nG--RIF~-~G~dg~--lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lv 231 (1311)
T KOG1900|consen 161 FTG----ELSIFNTSFKISVDGVSVNCITYTENG--RIFF-AGRDGN--LYELVYQAEDGWFGSRCRKICLTKSVLSSLV 231 (1311)
T ss_pred ccC----cccccccceeeecCCceEEEEEeccCC--cEEE-eecCCC--EEEEEEeccCchhhcccccccCchhHHHHhh
Confidence 100 001111 1222335567788755565 4544 555664 4433 111 1 00
Q ss_pred eee-----ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 213 RNI-----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 213 ~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.++ .+..+|..++++..-..+++-+..|.|.+||+...
T Consensus 232 Ps~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 232 PSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 011 13468999999999999999999999999999874
No 473
>PLN02193 nitrile-specifier protein
Probab=90.79 E-value=16 Score=35.03 Aligned_cols=61 Identities=5% Similarity=-0.019 Sum_probs=32.5
Q ss_pred eEEEEeeCCC-----cEEEEEcCCCceeeeee-----cccceeEEEECCCCCEEEEEeCC----CcEEEEEccCCC
Q 012996 190 ATIVSASEDR-----TCKVWSLLKGRLLRNIV-----FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAES 251 (451)
Q Consensus 190 ~~l~s~~~d~-----~i~iwd~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 251 (451)
.+++.|+.++ .+..||+.+.+-...-. ....-..++. -++++++.++.+ ..+.+||+.+..
T Consensus 280 ~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 280 NVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCE
Confidence 5666766543 46778877654322111 0011111222 256677777655 458889887753
No 474
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.77 E-value=12 Score=33.42 Aligned_cols=238 Identities=8% Similarity=0.002 Sum_probs=113.7
Q ss_pred cCcccCCCCCCccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcc-------------
Q 012996 50 SQLREQPSASSGSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRL------------- 114 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------- 114 (451)
+++++.|..+ |...+ +.+.. ....+..+...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 13 ~~~lL~GTe~-Gly~~-~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 13 GKWLLVGTEE-GLYVL-NISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred CcEEEEEeCC-ceEEE-EcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 3567777775 55444 45532 3445566778999999998777665544 334499999843321
Q ss_pred --eeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc----cCCcCceeEEEEeecC
Q 012996 115 --LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----TGHTLRITDIVIGYGG 187 (451)
Q Consensus 115 --~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~ 187 (451)
....-+|............ ...++++....+|.++........ ......+ ..-..++..+..+.+.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~-------f~~~k~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK-------FKLFKSKFLFPLISPVPVFVELVSSSF 163 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh-------hhhhcccccccCCCCccceEeeecccc
Confidence 0111133333333333321 223445555567777655331111 1111110 0112233333333332
Q ss_pred CeeEEEEeeCCCcEEEEEcCC--Ccee----eeeecc---cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996 188 VSATIVSASEDRTCKVWSLLK--GRLL----RNIVFP---SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~--~~~~----~~~~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (451)
....++.|+..+...++++.. .... ...... .++....+ +++.+|+ +..+ ...+.|......
T Consensus 164 ~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Ll-c~~~-~~v~Vn~~G~~~------ 234 (302)
T smart00036 164 ERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLL-CYDE-FGVFVNLYGKRR------ 234 (302)
T ss_pred cceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEE-EECc-EEEEEeCCCCcc------
Confidence 225666776643344444432 1100 000111 22323333 3344443 3333 344445443110
Q ss_pred ceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 259 MHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
.....+. -...+.++++. ..+|++-+.+ .|.|+++.+++.++++...
T Consensus 235 -~r~~~l~-w~~~p~~~~~~-~pyll~~~~~-~ievr~l~~~~l~q~i~~~ 281 (302)
T smart00036 235 -SRNPILH-WEFMPESFAYH-SPYLLAFHDN-GIEIRSIKTGELLQELADR 281 (302)
T ss_pred -ccceEEE-cCCcccEEEEE-CCEEEEEcCC-cEEEEECCCCceEEEEecC
Confidence 0011111 23455677777 4667666654 4999999999999988753
No 475
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.66 E-value=9.5 Score=33.35 Aligned_cols=117 Identities=8% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe------CCCcEEEEEccCCCCCCCCCCceeeee-e-ccC
Q 012996 198 DRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS------RDGSIYIAALNAESPSTSSYGMHIIGS-L-SDH 268 (451)
Q Consensus 198 d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~-~~~ 268 (451)
-..|++||..+.+-...-. ..+.|+++.|..+.+.++.|. ....+..||+.+.. +..+.. . ..-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-------w~~~~~~~s~~i 87 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-------WSSLGGGSSNSI 87 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-------eeecCCcccccC
Confidence 3458999987665443332 567899999987777776664 34568889988764 111111 1 123
Q ss_pred CcceeEEEEec---CCEEEEEc-CCC--cEEEEeCCCCceEEE-eecCCCCeeEEEEEec
Q 012996 269 SKAVTCLAYST---GDLLISGS-EDG--MVRVWDPITHNIVRM-FRLAKGPVNNILVVRR 321 (451)
Q Consensus 269 ~~~v~~~~~~~---~~~l~s~~-~dg--~i~iwd~~~~~~~~~-~~~~~~~v~~l~~s~~ 321 (451)
.++|+.+.+.. .++.++|. .+| .|..||=.+...+.. .......|..+.+-|-
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 47788887754 44555554 333 477777555554444 2222445666655443
No 476
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.41 E-value=12 Score=33.22 Aligned_cols=243 Identities=14% Similarity=0.142 Sum_probs=115.0
Q ss_pred CcEEEEeccCCCEEEEEcCC--CcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhh----hhccc
Q 012996 92 GTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECE----SQRAS 164 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~----~~~~~ 164 (451)
+++|+.|+.+| +++.++.. ++..+. .+...|+++...+..+.|++-+ ....++++++........ .....
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999988 55556554 233333 3466899999998766666544 334599999965443110 00000
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC----ceeee-----eecccceeEEEECCC--CCEE
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRN-----IVFPSVIDAIALDPA--EHVF 233 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~-----~~~~~~i~~~~~~~~--~~~l 233 (451)
.......-+|.....-..+.... ...++++....+|.++..... ..... ...+.++..+..+++ ...+
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~-~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGK-RSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCC-CcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 00111122333333333333332 234455556667777644322 11111 112233444444443 5678
Q ss_pred EEEeCCCcEEEEEccC--CCCCCCCCCceeeeeeccCC-cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceE--EEeec
Q 012996 234 YAGSRDGSIYIAALNA--ESPSTSSYGMHIIGSLSDHS-KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIV--RMFRL 308 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~ 308 (451)
.+|+..+...++++.. ....... .... ..... .++.......+.+|++- |....+-|....... ..+.-
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~s--l~~~--~~~~~~~p~~i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~w 242 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLS--LPFL--SEETSLKPISVVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILHW 242 (302)
T ss_pred EEEEcCCCCeEEEEeeccccccccc--cccc--ccccccCceEEEEECCCeEEEEE--CcEEEEEeCCCCccccceEEEc
Confidence 8887753455555533 1100000 0000 00111 34444444335444443 333444454320221 12222
Q ss_pred CCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCcc
Q 012996 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
.....++++.. .||..-+ +..|.++++.++.+.+.+
T Consensus 243 -~~~p~~~~~~~--pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 243 -EFMPESFAYHS--PYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred -CCcccEEEEEC--CEEEEEc-CCcEEEEECCCCceEEEE
Confidence 33456666663 5666554 455999999877654433
No 477
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=90.22 E-value=11 Score=35.52 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEc-------CCCcceeee-ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEV-------ASGRLLKKW-HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
.....+...|.-.+... ..|..++||+. .++.....+ .++...+.++ ++.....|.|..|+-
T Consensus 26 ~~~~~~gi~~e~g~Aw~-~~d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~- 95 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWI-VVDNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES- 95 (422)
T ss_dssp TTS-EEEEE-TTSEEEE-EETTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES--
T ss_pred ccceEEEEEcccCEEEE-EECCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc-
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (451)
-........... ..+..+.+.. +..++.......-.....+.-.+.|+.
T Consensus 96 ----------I~~~l~~~t~~~-i~l~gv~~~~--------------------l~~~e~~~~~~~~~~~~~I~~ts~GRi 144 (422)
T PF08801_consen 96 ----------ISHLLVLATPSQ-ISLLGVSYSE--------------------LLSGELSTSLTNVEPSGFIVSTSTGRI 144 (422)
T ss_dssp ----------TT-TT--EEEE---------------------------------------EEEEEEETTTEEEEETT--E
T ss_pred ----------chhhhhcCcccc-ccccccceee--------------------ecCCceEEECCCCceEEEEEECCCCeE
Q ss_pred EEEEeCC-CcEEEEEccCCCCCCCCCCceeeee-------eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 233 FYAGSRD-GSIYIAALNAESPSTSSYGMHIIGS-------LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 233 l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
+..+-.| +.++-.................... .......|.++...+ .+.+++.+.+|.|.+|++..+...
T Consensus 145 f~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~~ 224 (422)
T PF08801_consen 145 FFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGST 224 (422)
T ss_dssp EEEEE-TTS-EEEEE-TT-----------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-SS-EE
T ss_pred EEEeCCCCCCcEEEEEEcCcCCccccccccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCCc
Q ss_pred EEe
Q 012996 304 RMF 306 (451)
Q Consensus 304 ~~~ 306 (451)
...
T Consensus 225 ~~~ 227 (422)
T PF08801_consen 225 LVS 227 (422)
T ss_dssp EEE
T ss_pred eee
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.21 E-value=14 Score=33.40 Aligned_cols=159 Identities=16% Similarity=0.220 Sum_probs=83.8
Q ss_pred cCCeeEEEEccCCcEEEEeeCCCc------EEEeeCcchhh-hhhhhcccccceecccC-----CcCceeEEEEeecCCe
Q 012996 122 YRAVTCLVFSEDGSFLISGSEDGC------VRIWSLLTVFE-ECESQRASHLYLHSFTG-----HTLRITDIVIGYGGVS 189 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~dg~------i~vwd~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~i~~i~~~~~~~~ 189 (451)
-+.+..+.+.+++..+++.+.+|. +..+++..... ...........+..-.+ ......+|++.+++
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-- 96 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-- 96 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC--
Confidence 356788888865556777777777 55555532000 00000000001111111 11144577785555
Q ss_pred eEEEEeeCC------CcEEEEEcCCCceeeeee----------------cccceeEEEECCCCCEEEEEeCC-----C--
Q 012996 190 ATIVSASED------RTCKVWSLLKGRLLRNIV----------------FPSVIDAIALDPAEHVFYAGSRD-----G-- 240 (451)
Q Consensus 190 ~~l~s~~~d------~~i~iwd~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d-----g-- 240 (451)
.++++.-.+ ..|..++.. |+....+. .+....+++++|+|+.|+++... +
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 677776667 788888865 65544442 23457899999999977766432 2
Q ss_pred c-------EEEEEccCCCCCCCCCCceeeeeecc-----CCcceeEEEEec-CCEEEE
Q 012996 241 S-------IYIAALNAESPSTSSYGMHIIGSLSD-----HSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 241 ~-------i~i~d~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~l~s 285 (451)
. ++++.......... ..+....+.. ....|+.+.+-+ +++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 45554443211000 0122222222 456788888888 665554
No 479
>PRK05560 DNA gyrase subunit A; Validated
Probab=90.11 E-value=25 Score=36.24 Aligned_cols=249 Identities=12% Similarity=-0.013 Sum_probs=122.8
Q ss_pred CCCCcEEEEeccCCCEEEEEcCCCcc---------eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 89 NSHGTYIAGGGQSGDIYMWEVASGRL---------LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 89 ~~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
-++...+++-+.+|.|+--.+.+... ...++.. ..+..+........|+..+..|.+....+.......
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~-D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~- 572 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKED-DFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS- 572 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCC-CeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC-
Confidence 45566777778889888776543221 1112222 334344344445567777777887766554321110
Q ss_pred hhcccccce---ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEECCC
Q 012996 160 SQRASHLYL---HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA 229 (451)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~ 229 (451)
.......+ ..+.....-+..+.+........++..+.+|.++--++..- .....+.....+..+.....
T Consensus 573 -~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~ 651 (805)
T PRK05560 573 -RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDG 651 (805)
T ss_pred -cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCC
Confidence 00111111 12222222334444432112268899999999887765432 22222233344444444455
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-------Cc
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-------HN 301 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-------~~ 301 (451)
...++..+..|.+..+....-..............+.....-+..+.+.+ +.+++..+..|.++...+.. ++
T Consensus 652 ~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 652 DDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 56777788889888777654322111111122223333223333444444 34788888899888776432 12
Q ss_pred eEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 302 IVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 302 ~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
-+..++ ...+.+-.+........++..+.+|.+..++..
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 222222 222344433333333445555666766555543
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.00 E-value=25 Score=36.02 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=50.8
Q ss_pred CcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe----ec---------------CCCCeeEEEEEecCceeeec
Q 012996 269 SKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF----RL---------------AKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 269 ~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~---------------~~~~v~~l~~s~~~~~l~~~ 328 (451)
...|.++.... +.+++..-.||+|.++|..+.+.+... .. +..++-.++|||.+..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 35677888777 889999999999999998887655444 10 11134468899999999998
Q ss_pred cCCCCcc
Q 012996 329 SFSNPHT 335 (451)
Q Consensus 329 s~d~~i~ 335 (451)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 8888855
No 481
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=89.04 E-value=3.6 Score=41.05 Aligned_cols=140 Identities=13% Similarity=0.197 Sum_probs=79.1
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEec---ceEeeccCcccCCCCCCccEEEEECC----CCceeeeec-----
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVG---QRFLASSQLREQPSASSGSILYWSWS----KPQVEVKSL----- 78 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~~~~~d~g~i~vw~~~----~~~~~~~~~----- 78 (451)
.|+.+.+||+..+...+.+.......-.|.-+. ..|.+.-+.++..+.. ..+.++-+. +++......
T Consensus 100 ~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~-~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 100 NDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATE-KEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred cCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhh-heeeEEEEEeccccceeEEEecceEEe
Confidence 578999999997776655543332222222221 1233333333333333 566666543 333332221
Q ss_pred -CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC----C----c-------------cee---eeccccCCeeEEEEccC
Q 012996 79 -PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----G----R-------------LLK---KWHAHYRAVTCLVFSED 133 (451)
Q Consensus 79 -~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~----~-------------~~~---~~~~~~~~v~~~~~~~~ 133 (451)
.+-.|.|+.-+.+|+.+++|..| +.+|.+.- + + .+- .+.-|...|..++....
T Consensus 179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs 256 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS 256 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc
Confidence 34578899888899999988776 67776521 0 0 000 11235566777777766
Q ss_pred CcEEEEeeCCCcEEEeeCcc
Q 012996 134 GSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~ 153 (451)
...|.+-+....|+-|.+..
T Consensus 257 Rg~ly~Lr~kS~Vray~itk 276 (1263)
T COG5308 257 RGLLYVLRKKSAVRAYSITK 276 (1263)
T ss_pred ccceeeecccceeeeEeeec
Confidence 66677777777777777643
No 482
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=88.79 E-value=5.4 Score=39.60 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=74.7
Q ss_pred EeecCCCCCCeEEEECccCcee-eeeecCCCCCCceEEecceEee--------ccCcccCCCCCCccEEEEECCCCceee
Q 012996 5 IASSSVADTGIGCWDLESGAEQ-LRYKSCASPPHGLACVGQRFLA--------SSQLREQPSASSGSILYWSWSKPQVEV 75 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--------~~~~l~~~~~d~g~i~vw~~~~~~~~~ 75 (451)
+..|+ .++.|.++.-..+... ............+.++. +++ +|...+.+..-+|. ||.. +...
T Consensus 550 ic~gt-q~ssisissss~~s~ke~~~~~~spe~~~v~~l~--~ss~Slgagl~dgt~a~y~rap~gS---wd~e-p~~~- 621 (925)
T KOG3522|consen 550 ICLGT-QTSSISISSSSLDSIKEVTSEPPSPEHESVKLLL--FSSGSLGAGLIDGTLAVYGRAPSGS---WDGE-PNIS- 621 (925)
T ss_pred ccccC-ccceeEEeeccCCcccceeccCCCCchhhhhhhh--ccccccccCccCCccccccCCCCCC---CCCC-Cccc-
Confidence 45677 8899999986623222 12222222223333333 222 22222222222233 5544 2211
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
......+|...++..| ++.|+.+|.|.++...+......+. .|...|+++.+..++-+++-++.| .++.++.+
T Consensus 622 ~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred cccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 1223467888887633 4556788999999987765555443 455689999998777666655555 55665554
Q ss_pred c
Q 012996 153 T 153 (451)
Q Consensus 153 ~ 153 (451)
+
T Consensus 698 t 698 (925)
T KOG3522|consen 698 T 698 (925)
T ss_pred c
Confidence 4
No 483
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.62 E-value=32 Score=35.40 Aligned_cols=167 Identities=13% Similarity=0.066 Sum_probs=94.3
Q ss_pred cCCCCeeEEEEC---C----CCcEEEEeccCCCEEEEEcCCC---------------cceeeecc---ccCCeeEEEEcc
Q 012996 78 LPAEPIKPIAAN---S----HGTYIAGGGQSGDIYMWEVASG---------------RLLKKWHA---HYRAVTCLVFSE 132 (451)
Q Consensus 78 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~~~~~~ 132 (451)
....+|..|.|. . ..++|++=. ...+.|+...-. .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356789999997 2 224666643 456777772111 22333322 234677899999
Q ss_pred -CCcEEEEeeCCCcEEEeeCcchhhhhh-hhcccccceecc--c-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC
Q 012996 133 -DGSFLISGSEDGCVRIWSLLTVFEECE-SQRASHLYLHSF--T-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL 207 (451)
Q Consensus 133 -~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~ 207 (451)
+...||.....|...||++........ ...........+ . .....-..+.|..+. ..|+.++. ..+.++|+.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~--~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS--NRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC--CEEEEEcC-CceEEEECC
Confidence 567899999999999999922111000 000000000111 0 011233467776665 56666554 468999998
Q ss_pred CCceee---eeecccceeEEEECCC--CCEEEEEeCCCcEEEEEccCC
Q 012996 208 KGRLLR---NIVFPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 208 ~~~~~~---~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~ 250 (451)
+..... .......|..+.-+|. +..|+. + ...|...++...
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-T-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-T-SKEIIWLDVKSS 278 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEE-e-cCeEEEEEccCC
Confidence 776533 2224567888888886 333333 2 356777777763
No 484
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.37 E-value=17 Score=32.03 Aligned_cols=172 Identities=10% Similarity=0.158 Sum_probs=87.0
Q ss_pred ccEEEEECCCCceeeeec-------CCCCeeEEEECCCC-----cEEE-EeccCCCEEEEEcCCCcceeeeccc------
Q 012996 61 GSILYWSWSKPQVEVKSL-------PAEPIKPIAANSHG-----TYIA-GGGQSGDIYMWEVASGRLLKKWHAH------ 121 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~-------~~~~v~~~~~~~~~-----~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~------ 121 (451)
-.|.+||+.++++..+.. ....+..+.+.... .++. +=+..+.|.|+|+.+++..+.+..+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 478888988887654432 23456677775521 2332 3233457999999988655444321
Q ss_pred -------------cCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhh--hcc-cccceecccCCcCceeEEE
Q 012996 122 -------------YRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECES--QRA-SHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 122 -------------~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~-~~~~~~~~~~~~~~i~~i~ 182 (451)
...+..++.+| +++.|+-....+ -++|.+.+....... ... ....+..+........+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 12355566654 555555554432 234444332111110 000 0111122221223556677
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCc---eeeeee-c---ccceeEEEECC--CCCEEEE
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGR---LLRNIV-F---PSVIDAIALDP--AEHVFYA 235 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~-~---~~~i~~~~~~~--~~~~l~~ 235 (451)
+.+.| .++++--..+.|..|+..+.- ....+. . -..+..+.+.+ +|.+.+.
T Consensus 193 ~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 193 IDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp EETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred ECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 77776 888888899999999987621 122222 1 23467777777 5544443
No 485
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.31 E-value=1 Score=25.80 Aligned_cols=41 Identities=7% Similarity=-0.112 Sum_probs=26.2
Q ss_pred eccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEE
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAA 88 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~ 88 (451)
|+++.+.++...++.|.++|..+...............+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 45666666666568999999987766554433344445544
No 486
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=88.16 E-value=34 Score=35.23 Aligned_cols=245 Identities=12% Similarity=0.091 Sum_probs=122.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCce---------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-----
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS----- 111 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----- 111 (451)
+-++...+++.+.+ |.|+--+...-.. .......+.+..+........++..+..|.++......
T Consensus 492 li~~e~~~vllS~~-GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~ 570 (800)
T TIGR01063 492 LIARENVVVTLSHN-GYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEAS 570 (800)
T ss_pred ccCcceEEEEEcCC-CEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCC
Confidence 34455556666666 8887765542211 01111234555555555566666667778876665421
Q ss_pred ----Ccce---eeeccccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 112 ----GRLL---KKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 112 ----~~~~---~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
|..+ ..+.....-|.++... .++.+++..+.+|.++-.++....... ........+.. ...+..+.
T Consensus 571 r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~----r~G~~aiklke-~D~lv~v~ 645 (800)
T TIGR01063 571 RTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIR----SNGIIAIKLDD-GDELISVR 645 (800)
T ss_pred cCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhc----cCCcccccCCC-CCEEEEEE
Confidence 1222 1122222334445433 255678999999999998875432111 01111122222 33444444
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCC---------CceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLK---------GRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
..... ..++..+..|.+..+.... |.....+.....|.++..-+++..++..+..|.+....+..-...
T Consensus 646 ~~~~~--d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 646 LTSGD--DEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EeCCC--CEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 33333 4566666777766655432 111112223344555544445557888888998888876543221
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
...........+......+..+.... ...++..+.+|.+..++..
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHh
Confidence 11000111112333333444444444 5556666778887777654
No 487
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.87 E-value=10 Score=33.18 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=58.7
Q ss_pred CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee------CCCcEEEeeCcchhhhhhhhcccccceec-c-cC
Q 012996 102 GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS------EDGCVRIWSLLTVFEECESQRASHLYLHS-F-TG 173 (451)
Q Consensus 102 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~-~~ 173 (451)
..|++||..+.+-...-.+-.+.|+++.|..+.+.++.|. ....+..||+.+ ........ . ..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~---------~~w~~~~~~~s~~ 86 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN---------QTWSSLGGGSSNS 86 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC---------CeeeecCCccccc
Confidence 4599999877655444445678899999987777666664 355688899854 11111111 0 12
Q ss_pred CcCceeEEEEeecCCeeEEEEee-CCC--cEEEEEcCCCc
Q 012996 174 HTLRITDIVIGYGGVSATIVSAS-EDR--TCKVWSLLKGR 210 (451)
Q Consensus 174 ~~~~i~~i~~~~~~~~~~l~s~~-~d~--~i~iwd~~~~~ 210 (451)
-.++|..+.+......++.+.|. .++ .|..||=.+..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~ 126 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS 126 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE
Confidence 34678777775444335555544 333 45666544333
No 488
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.76 E-value=13 Score=33.45 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=66.3
Q ss_pred ccceeEEEECCCCCEEEEEeCCCc------EEEEEccCCCCCCCCCCceeeeeeccCCc--------ceeEEEEec-CCE
Q 012996 218 PSVIDAIALDPAEHVFYAGSRDGS------IYIAALNAESPSTSSYGMHIIGSLSDHSK--------AVTCLAYST-GDL 282 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~dg~------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~-~~~ 282 (451)
-+.+..+.+.|++..+++.+.+|. ++.+++.................+..-.+ ..-+|++.+ +.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788899877777777788887 76666655211000000011111111111 444788855 777
Q ss_pred EEEEcCC------CcEEEEeCCCCceEEEee---------------cCCCCeeEEEEEecCceeeecc
Q 012996 283 LISGSED------GMVRVWDPITHNIVRMFR---------------LAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 283 l~s~~~d------g~i~iwd~~~~~~~~~~~---------------~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+++.-.+ ..|.-++.. |+.+..+. ..+...-+|+++|+|+.|.++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 7776666 778888866 66655542 1234688999999999666554
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.41 E-value=24 Score=32.56 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=99.7
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC--
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP-- 82 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~-- 82 (451)
+.++. .+|.|.-.|..++..+....... ....+..- .+..+|+ +..++.+ |.+..+|..+++......-...
T Consensus 71 v~~~~-~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~--~~~~~G~-i~~g~~~-g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 71 VYVGT-RDGNIFALNPDTGLVKWSYPLLG-AVAQLSGP--ILGSDGK-IYVGSWD-GKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred EEEec-CCCcEEEEeCCCCcEEecccCcC-cceeccCc--eEEeCCe-EEEeccc-ceEEEEECCCCcEEEEEecCCCeE
Confidence 34445 68888888988888765443221 01111111 1344666 5555555 7888888877777766544331
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc---CCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY---RAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEE 157 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~ 157 (451)
+..-..-.++ .+..++.+|.+...|..+|+.+....... ..+..-....++ .++.+.. ++.+.-.|..++...
T Consensus 145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEe
Confidence 1111112233 33333467888888888888766543221 111110011223 3444444 555555666443221
Q ss_pred hhhhcccccceecccCCc-----CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc
Q 012996 158 CESQRASHLYLHSFTGHT-----LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP 218 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-----~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 218 (451)
..... .. ..+.. ..+..-.+.-+ .-++.++.++.+...|..+++.+..+...
T Consensus 223 w~~~~-----~~-~~~~~~~~~~~~~~~~~v~v~---~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKV-----SQ-TIGRTAISTTPAVDGGPVYVD---GGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeee-----ec-ccCcccccccccccCceEEEC---CcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 11000 00 00110 01111111122 23467778888999999999998888754
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.34 E-value=19 Score=35.56 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=48.5
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
..+.++++.-+|.|.-++.+..||.|++|+....+.-... ....+-..+.|...| |+++..|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc--eEEEeccchhheeec
Confidence 3566788888999999999999999999998655432211 122333456666544 667777777777754
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.21 E-value=17 Score=34.30 Aligned_cols=26 Identities=4% Similarity=0.063 Sum_probs=17.3
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVW 204 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iw 204 (451)
.|..+..++.| ..++-.+.+|.+..+
T Consensus 105 eV~~vl~s~~G--S~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTG--SHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCC--ceEEEecCCeeEEEE
Confidence 45566666766 677777777765544
No 492
>PRK13684 Ycf48-like protein; Provisional
Probab=87.05 E-value=23 Score=32.08 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=82.2
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEE-EEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKV-WSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~i-wd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
...+.++.+.+++ .+++ .+..|.+.. +|- .++.-.... ....++++.+.|++..+++| ..|.+++-..+.+.
T Consensus 172 ~g~~~~i~~~~~g--~~v~-~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~ 246 (334)
T PRK13684 172 AGVVRNLRRSPDG--KYVA-VSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE 246 (334)
T ss_pred cceEEEEEECCCC--eEEE-EeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence 5577888887765 4544 444554443 221 222222222 34678899999998877765 45766532222221
Q ss_pred CCCCCCCceeeeee-ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceee
Q 012996 252 PSTSSYGMHIIGSL-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLN 326 (451)
Q Consensus 252 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 326 (451)
. +..+..- ......+.++.+.+ +.. +.++.+|.|. .....++....... -......+.|..++..++
T Consensus 247 s------W~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 247 S------WSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred c------cccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 0 1111110 11224577888888 554 4555677654 34455554444432 223577888887776666
Q ss_pred eccCCCCccccc
Q 012996 327 LGSFSNPHTSSR 338 (451)
Q Consensus 327 ~~s~d~~i~iw~ 338 (451)
+ +..|.|.-|+
T Consensus 319 ~-G~~G~il~~~ 329 (334)
T PRK13684 319 L-GQRGVLLRYV 329 (334)
T ss_pred E-CCCceEEEec
Confidence 4 4667776555
No 493
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=87.01 E-value=22 Score=35.41 Aligned_cols=94 Identities=9% Similarity=0.095 Sum_probs=53.3
Q ss_pred eeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 221 IDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
-..++|-|.|..+++-+.|| .|.++.-+..... . ...-.+....+..++|+- ...++. ...+.|.+
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHG------e-f~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~l 320 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHG------E-FDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKL 320 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccC------C-ccccCCchhhhhhhhhhHHHHHHHH-hhcceEEE
Confidence 34589999999999977665 3555554332110 0 001112344566777876 444443 45677999
Q ss_pred EeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996 295 WDPITHNIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
|-..+..-.-.....-..+.-+.|+|..
T Consensus 321 wttkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 321 WTTKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEccceEEEEEEeecCCCcceeeecccc
Confidence 9876654333323333356667777744
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.81 E-value=28 Score=32.86 Aligned_cols=117 Identities=9% Similarity=0.104 Sum_probs=0.0
Q ss_pred eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-----CCcCceeEEEEeec---
Q 012996 115 LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-----GHTLRITDIVIGYG--- 186 (451)
Q Consensus 115 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~--- 186 (451)
+..+...-...+.|+|.||+++|++--..|.|++++..+ .....+..+. .......+|+++|+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~---------~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~ 92 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPET---------GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQ 92 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCC---------CceeeeecCCceeccCCCCceeeEEECCCccc
Q ss_pred -CCeeEEEEee----------CCCcEEEEEcCCC--------ceeeeee--cccceeEEEECCCCCEEEEEeCCC
Q 012996 187 -GVSATIVSAS----------EDRTCKVWSLLKG--------RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 187 -~~~~~l~s~~----------~d~~i~iwd~~~~--------~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
..+.+|+... ....|.-|.+... ..+..+. ....-..|.|.|+|.++++.+..+
T Consensus 93 ~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 93 EKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
No 495
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.70 E-value=3.6 Score=40.30 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=43.8
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCC---CCCCCC--Cc----eeeeee--------ccCCcceeEEEEec-----CCEEEE
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAES---PSTSSY--GM----HIIGSL--------SDHSKAVTCLAYST-----GDLLIS 285 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~--~~----~~~~~~--------~~~~~~v~~~~~~~-----~~~l~s 285 (451)
++...++++..||.+......... ...... .. ..+..+ ......+..+++++ ..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 567788888889988888776521 100000 00 000000 01122333344433 678999
Q ss_pred EcCCCcEEEEeCCCCceEEEee
Q 012996 286 GSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977653
No 496
>PLN02193 nitrile-specifier protein
Probab=86.23 E-value=32 Score=32.94 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=50.5
Q ss_pred ccCcccCCCCCC----ccEEEEECCCCceeeeecC-----CCCeeEEEECCCCcEEEEeccCC-----CEEEEEcCCCcc
Q 012996 49 SSQLREQPSASS----GSILYWSWSKPQVEVKSLP-----AEPIKPIAANSHGTYIAGGGQSG-----DIYMWEVASGRL 114 (451)
Q Consensus 49 ~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 114 (451)
++.+.+.+|.+. ..+.+||..+.+....... ...-.++.. -++++.+.|+.++ .+..||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 455555665431 4578888877654432211 111112222 2466677776543 367788766542
Q ss_pred eeee-----ccccCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcc
Q 012996 115 LKKW-----HAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLT 153 (451)
Q Consensus 115 ~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~ 153 (451)
...- ....... .+.. -+++.++.++.+ ..+.+||+.+
T Consensus 307 ~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 307 FHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCC
Confidence 2110 0111111 1222 246677777655 3578888865
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.03 E-value=4.3 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=25.7
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEE
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIAL 226 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~ 226 (451)
++++...++.|.++|..+++.+..+........++|
T Consensus 6 lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 6 LYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 444455688999999999888888775544555554
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=86.00 E-value=15 Score=31.23 Aligned_cols=148 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred EEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCcceeeeccccCCeeEEEEcc------C
Q 012996 64 LYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE------D 133 (451)
Q Consensus 64 ~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~------~ 133 (451)
.+||..++... ......--+.+-.+-+||++|.+|+. ...+++++......-..+.........=.|.| |
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Q ss_pred CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee
Q 012996 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR 213 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 213 (451)
|+.|+.|+......-+-.................... .....----+...|+| ++++.+..+. .|||..+++.++
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~-~~~~nlYP~~~llPdG--~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD-TLPNNLYPFVHLLPDG--NLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc-cCccccCceEEEcCCC--CEEEEEcCCc--EEEeCCCCeEEe
Q ss_pred eee
Q 012996 214 NIV 216 (451)
Q Consensus 214 ~~~ 216 (451)
.+.
T Consensus 204 ~lP 206 (243)
T PF07250_consen 204 TLP 206 (243)
T ss_pred eCC
No 499
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.26 E-value=5.4 Score=32.05 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=24.5
Q ss_pred CCeeEEEEccCC------cEEEEeeCCCcEEEeeCc
Q 012996 123 RAVTCLVFSEDG------SFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 123 ~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~~ 152 (451)
..|..++|||.| -+|++.+.+|.|.+|...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999943 468888999999999863
No 500
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.01 E-value=9.9 Score=30.52 Aligned_cols=33 Identities=3% Similarity=0.085 Sum_probs=27.1
Q ss_pred CceeEEEEeecCC----eeEEEEeeCCCcEEEEEcCC
Q 012996 176 LRITDIVIGYGGV----SATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 176 ~~i~~i~~~~~~~----~~~l~s~~~d~~i~iwd~~~ 208 (451)
..+.+++|+|.|- +-+|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4788999999553 36899999999999998764
Done!