Query 012996
Match_columns 451
No_of_seqs 870 out of 3754
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 20:15:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6E-49 2.1E-53 365.4 34.2 281 34-339 106-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 3.7E-48 1.3E-52 347.7 34.6 285 30-339 26-319 (321)
3 1nr0_A Actin interacting prote 100.0 3.1E-47 1E-51 372.0 37.5 318 4-340 162-610 (611)
4 4gqb_B Methylosome protein 50; 100.0 7.4E-48 2.5E-52 348.2 30.4 299 15-347 16-337 (344)
5 1got_B GT-beta; complex (GTP-b 100.0 8.3E-47 2.9E-51 342.3 36.4 280 33-338 52-340 (340)
6 1nr0_A Actin interacting prote 100.0 4.7E-47 1.6E-51 370.7 37.2 327 3-343 72-569 (611)
7 4g56_B MGC81050 protein; prote 100.0 9.2E-48 3.2E-52 350.4 30.0 305 4-341 18-343 (357)
8 2pbi_B Guanine nucleotide-bind 100.0 3.3E-46 1.1E-50 339.9 37.5 288 25-338 56-354 (354)
9 2ynn_A Coatomer subunit beta'; 100.0 1.8E-46 6.1E-51 334.6 34.7 289 25-340 5-301 (304)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-46 5.5E-51 341.0 34.4 309 24-348 6-342 (345)
11 2ymu_A WD-40 repeat protein; u 100.0 3.1E-46 1.1E-50 363.7 38.4 300 4-338 276-577 (577)
12 3iz6_a 40S ribosomal protein R 100.0 1.7E-46 6E-51 345.5 30.6 303 13-343 46-377 (380)
13 4ery_A WD repeat-containing pr 100.0 2E-44 6.8E-49 323.1 35.3 282 34-340 21-311 (312)
14 1vyh_C Platelet-activating fac 100.0 7.6E-45 2.6E-49 337.8 33.2 269 3-298 121-410 (410)
15 3frx_A Guanine nucleotide-bind 100.0 2.1E-44 7.2E-49 323.4 34.2 283 33-341 14-317 (319)
16 3ow8_A WD repeat-containing pr 100.0 2.8E-44 9.7E-49 322.5 34.5 268 4-298 50-320 (321)
17 2ymu_A WD-40 repeat protein; u 100.0 4.3E-44 1.5E-48 348.6 38.3 303 4-341 235-539 (577)
18 1r5m_A SIR4-interacting protei 100.0 1.4E-44 4.6E-49 338.4 33.1 310 4-341 60-425 (425)
19 2pm9_A Protein WEB1, protein t 100.0 4.2E-45 1.5E-49 341.1 29.4 312 4-341 27-414 (416)
20 2hes_X YDR267CP; beta-propelle 100.0 3.9E-44 1.3E-48 323.3 34.2 302 22-341 3-328 (330)
21 1erj_A Transcriptional repress 100.0 3.9E-44 1.3E-48 331.3 34.3 311 13-341 40-389 (393)
22 1got_B GT-beta; complex (GTP-b 100.0 1.2E-43 4.2E-48 321.5 34.6 264 3-296 68-340 (340)
23 2xzm_R RACK1; ribosome, transl 100.0 7.4E-44 2.5E-48 323.5 32.2 291 25-341 13-340 (343)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-43 5.3E-48 321.4 32.4 288 4-306 30-342 (345)
25 1gxr_A ESG1, transducin-like e 100.0 4.6E-43 1.6E-47 317.7 35.0 304 4-339 23-335 (337)
26 3vl1_A 26S proteasome regulato 100.0 8.6E-44 3E-48 332.7 30.7 309 4-341 70-419 (420)
27 4aow_A Guanine nucleotide-bind 100.0 5.7E-43 1.9E-47 317.6 35.2 295 22-342 27-338 (340)
28 2ynn_A Coatomer subunit beta'; 100.0 5.3E-43 1.8E-47 312.2 32.5 251 76-347 9-265 (304)
29 2pbi_B Guanine nucleotide-bind 100.0 4.2E-42 1.4E-46 312.9 35.8 264 4-296 78-354 (354)
30 4gqb_B Methylosome protein 50; 100.0 1E-42 3.6E-47 314.5 28.2 270 4-301 44-333 (344)
31 3zwl_B Eukaryotic translation 100.0 8.6E-42 2.9E-46 313.3 33.5 294 34-343 30-348 (369)
32 3iz6_a 40S ribosomal protein R 100.0 3.1E-42 1.1E-46 317.1 30.3 270 4-301 80-377 (380)
33 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.1E-41 2.4E-45 315.2 38.4 300 3-342 130-443 (445)
34 2hes_X YDR267CP; beta-propelle 100.0 1.5E-41 5.3E-46 306.3 31.5 274 4-299 26-328 (330)
35 1sq9_A Antiviral protein SKI8; 100.0 1.6E-41 5.6E-46 314.8 32.2 295 31-342 11-396 (397)
36 2pm9_A Protein WEB1, protein t 100.0 3.9E-42 1.3E-46 321.1 28.0 296 38-347 14-343 (416)
37 3i2n_A WD repeat-containing pr 100.0 4.8E-42 1.6E-46 313.6 28.0 291 34-342 16-354 (357)
38 3frx_A Guanine nucleotide-bind 100.0 4.1E-41 1.4E-45 302.0 33.0 275 3-300 31-318 (319)
39 4g56_B MGC81050 protein; prote 100.0 7.3E-42 2.5E-46 311.5 28.4 275 3-302 55-346 (357)
40 3ei3_B DNA damage-binding prot 100.0 9.2E-42 3.1E-46 314.9 28.9 297 19-341 59-382 (383)
41 3dm0_A Maltose-binding peripla 100.0 2.5E-41 8.6E-46 335.6 33.4 285 34-340 380-692 (694)
42 2oaj_A Protein SNI1; WD40 repe 100.0 1.4E-41 5E-46 343.6 31.4 328 4-344 71-608 (902)
43 1pgu_A Actin interacting prote 100.0 1.6E-40 5.3E-45 326.0 36.2 316 4-341 175-614 (615)
44 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-42 5.6E-47 328.5 21.0 306 4-343 175-519 (524)
45 3vl1_A 26S proteasome regulato 100.0 2E-41 6.8E-46 316.7 27.9 280 39-343 59-367 (420)
46 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-41 1.1E-45 356.5 31.9 326 3-347 714-1164(1249)
47 2xzm_R RACK1; ribosome, transl 100.0 3.3E-40 1.1E-44 299.4 33.6 275 3-300 40-341 (343)
48 1r5m_A SIR4-interacting protei 100.0 1.7E-40 5.7E-45 310.7 32.2 301 12-343 24-363 (425)
49 3odt_A Protein DOA1; ubiquitin 100.0 4.5E-40 1.5E-44 294.9 32.8 284 24-345 9-300 (313)
50 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-40 7.9E-45 349.8 36.1 333 3-344 628-1037(1249)
51 2pm7_B Protein transport prote 100.0 4.4E-40 1.5E-44 292.3 31.8 251 76-340 5-284 (297)
52 3k26_A Polycomb protein EED; W 100.0 3.9E-41 1.3E-45 308.6 25.1 289 34-340 16-365 (366)
53 1k8k_C P40, ARP2/3 complex 41 100.0 2.6E-40 8.9E-45 303.9 30.2 285 35-341 7-361 (372)
54 3v7d_B Cell division control p 100.0 1.4E-39 4.7E-44 308.2 36.0 299 3-338 133-460 (464)
55 4e54_B DNA damage-binding prot 100.0 1.7E-40 5.9E-45 311.3 28.7 285 34-344 117-433 (435)
56 3gre_A Serine/threonine-protei 100.0 8.7E-41 3E-45 314.0 26.7 303 17-338 47-437 (437)
57 4ery_A WD repeat-containing pr 100.0 4.8E-39 1.6E-43 288.1 35.9 267 3-298 36-311 (312)
58 1erj_A Transcriptional repress 100.0 2E-39 6.9E-44 299.8 33.9 275 4-299 78-389 (393)
59 3dwl_C Actin-related protein 2 100.0 4.8E-41 1.6E-45 309.5 22.7 285 36-339 11-377 (377)
60 2oaj_A Protein SNI1; WD40 repe 100.0 2.7E-40 9.3E-45 334.3 29.4 318 3-343 30-521 (902)
61 4aez_A CDC20, WD repeat-contai 100.0 1.6E-39 5.5E-44 301.5 32.2 276 46-346 99-385 (401)
62 4gga_A P55CDC, cell division c 100.0 2.3E-39 7.9E-44 302.3 32.8 275 40-343 109-397 (420)
63 4a11_B DNA excision repair pro 100.0 5.3E-40 1.8E-44 305.6 27.6 313 12-347 22-371 (408)
64 1yfq_A Cell cycle arrest prote 100.0 3.7E-39 1.3E-43 292.7 31.7 291 32-339 7-322 (342)
65 4aez_A CDC20, WD repeat-contai 100.0 4.7E-39 1.6E-43 298.4 32.9 276 5-307 106-388 (401)
66 4gga_A P55CDC, cell division c 100.0 9.3E-39 3.2E-43 298.2 35.0 293 3-320 117-416 (420)
67 4ggc_A P55CDC, cell division c 100.0 8.4E-39 2.9E-43 287.3 31.9 274 40-342 29-316 (318)
68 1pgu_A Actin interacting prote 100.0 4.8E-39 1.6E-43 315.4 32.9 300 4-340 32-365 (615)
69 1gxr_A ESG1, transducin-like e 100.0 2.9E-39 9.9E-44 292.6 28.2 282 37-344 10-299 (337)
70 4h5i_A Guanine nucleotide-exch 100.0 7.2E-40 2.5E-44 299.1 24.0 281 37-341 15-343 (365)
71 3bg1_A Protein SEC13 homolog; 100.0 1E-39 3.4E-44 292.6 23.9 249 77-340 10-292 (316)
72 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-38 5.7E-43 321.7 34.9 270 3-299 26-302 (814)
73 3zwl_B Eukaryotic translation 100.0 1.9E-38 6.4E-43 291.0 31.6 276 3-306 45-353 (369)
74 3v7d_B Cell division control p 100.0 6.9E-38 2.3E-42 296.6 36.4 296 26-345 114-425 (464)
75 1sq9_A Antiviral protein SKI8; 100.0 1.2E-38 4.3E-43 295.4 30.0 268 4-301 28-397 (397)
76 3k26_A Polycomb protein EED; W 100.0 6.4E-39 2.2E-43 293.8 27.2 281 5-298 37-365 (366)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-38 5E-43 322.1 32.1 290 26-342 6-303 (814)
78 1p22_A F-BOX/WD-repeat protein 100.0 4.3E-38 1.5E-42 295.2 32.2 281 28-343 125-416 (435)
79 4aow_A Guanine nucleotide-bind 100.0 7.2E-38 2.5E-42 283.9 31.8 281 3-301 52-339 (340)
80 3dm0_A Maltose-binding peripla 100.0 9.3E-38 3.2E-42 310.0 33.8 266 3-298 396-692 (694)
81 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-38 1.2E-42 289.6 28.7 289 3-301 21-363 (372)
82 2pm7_B Protein transport prote 100.0 1.7E-37 5.8E-42 275.6 31.1 249 34-298 7-284 (297)
83 3dw8_B Serine/threonine-protei 100.0 6.1E-38 2.1E-42 295.5 29.3 285 35-338 27-443 (447)
84 3mmy_A MRNA export factor; mRN 100.0 2.2E-37 7.4E-42 283.8 31.6 295 18-341 24-346 (368)
85 3ei3_B DNA damage-binding prot 100.0 1.4E-37 4.8E-42 286.9 30.1 269 3-299 87-382 (383)
86 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-37 3.8E-42 283.5 29.0 261 75-344 6-340 (351)
87 4a11_B DNA excision repair pro 100.0 3.9E-37 1.3E-41 286.3 32.5 320 3-340 57-404 (408)
88 2aq5_A Coronin-1A; WD40 repeat 100.0 1.7E-37 5.8E-42 288.2 28.8 277 46-344 42-345 (402)
89 3odt_A Protein DOA1; ubiquitin 100.0 1.6E-36 5.4E-41 271.8 33.7 266 4-307 31-304 (313)
90 4e54_B DNA damage-binding prot 100.0 9.5E-38 3.2E-42 292.7 26.6 275 3-303 133-434 (435)
91 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-36 6.1E-41 285.2 34.7 283 25-347 110-397 (445)
92 3bg1_A Protein SEC13 homolog; 100.0 8.5E-38 2.9E-42 280.0 23.9 249 34-298 11-292 (316)
93 3dwl_C Actin-related protein 2 100.0 3.6E-38 1.2E-42 290.2 21.9 252 77-339 8-280 (377)
94 4ggc_A P55CDC, cell division c 100.0 4.1E-36 1.4E-40 269.7 34.6 275 3-301 37-317 (318)
95 3i2n_A WD repeat-containing pr 100.0 2.2E-37 7.6E-42 282.7 26.7 280 3-302 32-356 (357)
96 3jrp_A Fusion protein of prote 100.0 1.1E-36 3.7E-41 280.4 29.3 254 75-342 6-288 (379)
97 4h5i_A Guanine nucleotide-exch 100.0 3.2E-36 1.1E-40 275.0 30.6 271 3-299 27-343 (365)
98 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-37 4.9E-42 294.7 21.4 270 36-342 133-429 (524)
99 1p22_A F-BOX/WD-repeat protein 100.0 6E-36 2E-40 280.6 32.0 286 3-320 144-434 (435)
100 3gre_A Serine/threonine-protei 100.0 1.1E-36 3.7E-41 286.1 25.3 286 46-349 35-367 (437)
101 2xyi_A Probable histone-bindin 100.0 2E-36 6.8E-41 283.2 26.3 254 76-342 124-411 (430)
102 1l0q_A Surface layer protein; 100.0 1.7E-34 5.8E-39 267.0 37.8 310 2-343 2-344 (391)
103 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.5E-35 2.2E-39 274.7 33.5 279 37-340 5-390 (450)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-36 2E-40 277.8 25.4 275 3-302 48-345 (402)
105 3f3f_A Nucleoporin SEH1; struc 100.0 5.7E-35 1.9E-39 265.5 31.0 269 34-307 9-345 (351)
106 3jrp_A Fusion protein of prote 100.0 3.2E-35 1.1E-39 270.6 28.3 259 24-303 2-291 (379)
107 2j04_A TAU60, YPL007P, hypothe 100.0 5.6E-36 1.9E-40 276.7 21.3 252 3-298 28-296 (588)
108 3dw8_B Serine/threonine-protei 100.0 1.8E-35 6.1E-40 278.6 24.7 258 78-344 26-376 (447)
109 2j04_A TAU60, YPL007P, hypothe 100.0 7.6E-36 2.6E-40 275.8 21.2 260 36-339 15-295 (588)
110 3jro_A Fusion protein of prote 100.0 2.6E-35 8.7E-40 294.0 26.3 253 76-342 5-286 (753)
111 1yfq_A Cell cycle arrest prote 100.0 1.5E-34 5E-39 262.4 27.9 261 4-297 25-322 (342)
112 2w18_A PALB2, fancn, partner a 100.0 9.7E-35 3.3E-39 252.2 25.1 271 2-339 54-355 (356)
113 3bws_A Protein LP49; two-domai 100.0 7.6E-34 2.6E-38 266.4 33.0 299 11-341 97-432 (433)
114 3jro_A Fusion protein of prote 100.0 1.7E-34 5.9E-39 288.1 26.9 251 33-299 6-285 (753)
115 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-33 4E-38 257.3 30.0 289 17-342 3-337 (355)
116 4gq1_A NUP37; propeller, trans 100.0 5E-35 1.7E-39 270.1 18.4 287 36-338 18-386 (393)
117 3mmy_A MRNA export factor; mRN 100.0 2.1E-33 7.3E-38 257.2 29.1 269 3-299 55-346 (368)
118 3lrv_A PRE-mRNA-splicing facto 100.0 5.9E-34 2E-38 258.4 24.2 266 46-340 44-332 (343)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 8.6E-33 2.9E-37 260.2 32.8 237 38-298 104-390 (450)
120 2xyi_A Probable histone-bindin 100.0 5.2E-33 1.8E-37 260.0 30.3 255 34-300 126-411 (430)
121 1l0q_A Surface layer protein; 100.0 4.2E-32 1.5E-36 251.0 31.3 266 52-344 4-278 (391)
122 3vu4_A KMHSV2; beta-propeller 100.0 9.9E-32 3.4E-36 244.5 27.9 254 65-342 3-272 (355)
123 3lrv_A PRE-mRNA-splicing facto 100.0 1.4E-32 4.9E-37 249.3 19.8 238 87-342 43-293 (343)
124 1nir_A Nitrite reductase; hemo 100.0 1.3E-30 4.5E-35 249.1 31.0 322 3-347 150-520 (543)
125 3bws_A Protein LP49; two-domai 100.0 4.8E-30 1.6E-34 240.5 31.9 269 3-299 135-432 (433)
126 4gq1_A NUP37; propeller, trans 100.0 1.5E-31 5.3E-36 246.8 20.5 239 46-297 97-387 (393)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 5.7E-30 2E-34 237.6 29.3 282 11-324 87-411 (415)
128 1nir_A Nitrite reductase; hemo 100.0 4.9E-28 1.7E-32 231.3 28.5 276 46-345 145-462 (543)
129 2ecf_A Dipeptidyl peptidase IV 100.0 1.3E-27 4.6E-32 239.2 26.4 310 4-341 50-459 (741)
130 2w18_A PALB2, fancn, partner a 100.0 1.1E-27 3.6E-32 208.2 22.1 211 37-297 112-355 (356)
131 2z3z_A Dipeptidyl aminopeptida 100.0 1.4E-27 4.7E-32 237.8 24.8 309 5-343 38-437 (706)
132 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.2E-27 4E-32 222.0 22.5 276 38-342 64-388 (415)
133 2ojh_A Uncharacterized protein 100.0 9.4E-27 3.2E-31 206.2 25.4 251 60-332 21-293 (297)
134 1ri6_A Putative isomerase YBHE 100.0 1.6E-25 5.3E-30 202.9 29.8 296 3-323 6-335 (343)
135 3u4y_A Uncharacterized protein 100.0 1.3E-25 4.5E-30 202.5 28.6 275 3-301 11-306 (331)
136 1pby_B Quinohemoprotein amine 99.9 1.7E-25 5.8E-30 202.1 28.5 274 3-310 2-321 (337)
137 1ri6_A Putative isomerase YBHE 99.9 6.7E-26 2.3E-30 205.3 25.2 275 51-340 5-307 (343)
138 1xfd_A DIP, dipeptidyl aminope 99.9 4.5E-26 1.5E-30 227.6 26.2 299 5-328 31-427 (723)
139 3vgz_A Uncharacterized protein 99.9 7.5E-25 2.6E-29 199.3 31.7 269 38-333 42-336 (353)
140 1k32_A Tricorn protease; prote 99.9 2E-25 7E-30 230.9 30.0 316 5-343 27-463 (1045)
141 3u4y_A Uncharacterized protein 99.9 7.1E-25 2.4E-29 197.6 28.0 276 46-342 5-305 (331)
142 2ecf_A Dipeptidyl peptidase IV 99.9 7.1E-26 2.4E-30 226.8 23.6 276 36-340 36-412 (741)
143 1pby_B Quinohemoprotein amine 99.9 1.1E-25 3.9E-30 203.2 20.6 265 52-344 3-313 (337)
144 2ojh_A Uncharacterized protein 99.9 7.5E-25 2.6E-29 193.9 23.4 253 8-290 18-293 (297)
145 1xfd_A DIP, dipeptidyl aminope 99.9 3.7E-25 1.2E-29 221.0 22.6 275 39-340 19-392 (723)
146 1k32_A Tricorn protease; prote 99.9 1.4E-24 4.7E-29 224.7 27.7 293 12-340 182-501 (1045)
147 3hfq_A Uncharacterized protein 99.9 1E-22 3.5E-27 184.7 28.4 264 61-340 16-316 (347)
148 3vgz_A Uncharacterized protein 99.9 2E-22 6.9E-27 183.2 30.0 249 12-290 68-335 (353)
149 3hfq_A Uncharacterized protein 99.9 9.8E-23 3.4E-27 184.9 26.8 282 1-304 1-324 (347)
150 1jmx_B Amine dehydrogenase; ox 99.9 3E-23 1E-27 188.4 22.8 272 46-343 7-327 (349)
151 1z68_A Fibroblast activation p 99.9 2.5E-23 8.5E-28 207.5 22.4 319 6-343 30-445 (719)
152 2z3z_A Dipeptidyl aminopeptida 99.9 1.2E-22 3.9E-27 202.3 26.1 275 12-318 100-452 (706)
153 3o4h_A Acylamino-acid-releasin 99.9 4E-23 1.4E-27 200.8 22.1 268 37-341 22-315 (582)
154 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-22 5E-27 188.4 24.1 262 61-340 23-332 (434)
155 1jmx_B Amine dehydrogenase; ox 99.9 2E-21 7E-26 176.2 30.2 267 3-309 12-335 (349)
156 3scy_A Hypothetical bacterial 99.9 1.4E-20 4.8E-25 171.6 32.8 291 11-319 25-360 (361)
157 3o4h_A Acylamino-acid-releasin 99.9 8.7E-23 3E-27 198.4 19.1 234 80-339 21-274 (582)
158 3pe7_A Oligogalacturonate lyas 99.9 9.2E-22 3.1E-26 181.4 23.0 302 15-340 12-381 (388)
159 3scy_A Hypothetical bacterial 99.9 1.9E-20 6.6E-25 170.7 31.0 271 61-340 27-336 (361)
160 1z68_A Fibroblast activation p 99.9 2.7E-22 9.3E-27 200.0 18.9 276 46-340 23-390 (719)
161 2oit_A Nucleoporin 214KDA; NH2 99.9 1.3E-21 4.5E-26 181.9 21.8 196 38-251 38-280 (434)
162 2oiz_A Aromatic amine dehydrog 99.9 3.2E-20 1.1E-24 168.5 27.6 285 11-323 29-360 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.9 6.4E-20 2.2E-24 167.4 26.1 278 1-300 1-342 (365)
164 1jof_A Carboxy-CIS,CIS-muconat 99.9 4.7E-20 1.6E-24 168.2 25.0 268 61-342 14-342 (365)
165 2dg1_A DRP35, lactonase; beta 99.9 8.5E-19 2.9E-23 157.9 29.5 276 39-332 8-301 (333)
166 4a5s_A Dipeptidyl peptidase 4 99.9 3.3E-19 1.1E-23 177.9 28.2 311 4-341 30-449 (740)
167 3fvz_A Peptidyl-glycine alpha- 99.8 2.8E-18 9.5E-23 154.0 30.3 241 80-342 23-323 (329)
168 3c5m_A Oligogalacturonate lyas 99.8 1E-19 3.5E-24 168.0 20.5 296 16-340 13-381 (396)
169 3azo_A Aminopeptidase; POP fam 99.8 6.3E-19 2.2E-23 174.1 25.7 288 3-313 36-383 (662)
170 1q7f_A NHL, brain tumor CG1071 99.8 1.4E-17 4.7E-22 146.6 29.6 234 80-341 29-280 (286)
171 2oiz_A Aromatic amine dehydrog 99.8 2.7E-18 9.4E-23 155.8 24.4 257 61-342 31-335 (361)
172 1qks_A Cytochrome CD1 nitrite 99.8 2.2E-17 7.5E-22 157.3 29.7 320 3-344 168-541 (567)
173 4a5s_A Dipeptidyl peptidase 4 99.8 3E-18 1E-22 171.0 24.0 280 46-339 24-396 (740)
174 3pe7_A Oligogalacturonate lyas 99.8 4.4E-18 1.5E-22 156.7 23.3 236 86-344 41-332 (388)
175 3azo_A Aminopeptidase; POP fam 99.8 5.9E-18 2E-22 167.1 24.6 282 35-338 22-364 (662)
176 1q7f_A NHL, brain tumor CG1071 99.8 1E-16 3.4E-21 141.0 27.4 237 35-301 28-282 (286)
177 2gop_A Trilobed protease; beta 99.8 3.1E-17 1.1E-21 148.5 23.3 251 12-311 42-341 (347)
178 3dsm_A Uncharacterized protein 99.8 1.7E-16 5.7E-21 142.2 27.1 279 11-319 15-320 (328)
179 2gop_A Trilobed protease; beta 99.8 5.6E-17 1.9E-21 146.8 23.7 239 61-340 43-330 (347)
180 3fvz_A Peptidyl-glycine alpha- 99.8 1.6E-16 5.4E-21 142.6 25.8 236 37-298 24-321 (329)
181 2xdw_A Prolyl endopeptidase; a 99.8 9.5E-17 3.2E-21 159.5 26.0 244 82-343 126-416 (710)
182 3e5z_A Putative gluconolactona 99.8 3.6E-16 1.2E-20 138.2 26.6 232 79-333 26-279 (296)
183 2z2n_A Virginiamycin B lyase; 99.8 7.3E-15 2.5E-19 129.8 33.2 272 37-340 15-294 (299)
184 2bkl_A Prolyl endopeptidase; m 99.8 5.6E-17 1.9E-21 160.6 20.9 278 46-343 75-399 (695)
185 3dsm_A Uncharacterized protein 99.8 1.3E-15 4.5E-20 136.4 27.8 254 61-341 17-302 (328)
186 1rwi_B Serine/threonine-protei 99.7 5.6E-16 1.9E-20 134.9 24.8 239 82-343 25-266 (270)
187 1qks_A Cytochrome CD1 nitrite 99.7 2.5E-15 8.7E-20 143.1 30.2 268 52-342 168-478 (567)
188 3c5m_A Oligogalacturonate lyas 99.7 4.9E-17 1.7E-21 150.0 17.4 236 83-344 38-332 (396)
189 2xdw_A Prolyl endopeptidase; a 99.7 1.5E-15 5.2E-20 150.8 28.2 246 38-301 126-416 (710)
190 2bkl_A Prolyl endopeptidase; m 99.7 1.1E-15 3.9E-20 151.3 26.2 239 37-302 121-400 (695)
191 3no2_A Uncharacterized protein 99.7 3.8E-15 1.3E-19 129.4 25.7 247 49-317 4-272 (276)
192 3e5z_A Putative gluconolactona 99.7 5.3E-15 1.8E-19 130.6 26.2 232 38-302 29-289 (296)
193 1rwi_B Serine/threonine-protei 99.7 4.2E-15 1.4E-19 129.4 24.9 239 38-302 25-267 (270)
194 2dg1_A DRP35, lactonase; beta 99.7 8.9E-15 3.1E-19 131.5 27.0 247 11-290 25-301 (333)
195 3sjl_D Methylamine dehydrogena 99.7 1.2E-14 4.2E-19 129.9 25.9 280 12-321 58-384 (386)
196 1pjx_A Dfpase, DIISOPROPYLFLUO 99.7 6.3E-14 2.2E-18 124.8 29.4 245 80-341 17-299 (314)
197 1yr2_A Prolyl oligopeptidase; 99.7 2.4E-15 8.2E-20 150.0 22.2 279 46-343 114-443 (741)
198 2mad_H Methylamine dehydrogena 99.7 1.3E-13 4.3E-18 125.2 31.2 271 47-344 29-353 (373)
199 3no2_A Uncharacterized protein 99.7 2.9E-14 9.9E-19 123.8 25.4 210 91-328 4-230 (276)
200 2mad_H Methylamine dehydrogena 99.7 4.8E-13 1.6E-17 121.3 34.3 262 14-306 48-357 (373)
201 2qc5_A Streptogramin B lactona 99.7 4.1E-13 1.4E-17 118.6 32.3 263 37-329 20-290 (300)
202 2z2n_A Virginiamycin B lyase; 99.6 5.1E-13 1.7E-17 117.9 29.9 236 80-340 14-254 (299)
203 3sjl_D Methylamine dehydrogena 99.6 4.6E-14 1.6E-18 126.2 21.4 274 46-345 40-367 (386)
204 3g4e_A Regucalcin; six bladed 99.6 1.3E-12 4.5E-17 115.1 28.6 231 81-330 13-261 (297)
205 3c75_H MADH, methylamine dehyd 99.6 3.2E-13 1.1E-17 123.0 25.1 264 13-306 99-409 (426)
206 3c75_H MADH, methylamine dehyd 99.6 7.6E-14 2.6E-18 127.1 20.9 278 48-344 82-405 (426)
207 3q7m_A Lipoprotein YFGL, BAMB; 99.6 2.5E-12 8.4E-17 117.6 30.3 308 4-338 55-375 (376)
208 3hrp_A Uncharacterized protein 99.6 6E-13 2E-17 122.5 25.9 234 81-338 131-407 (409)
209 1yr2_A Prolyl oligopeptidase; 99.6 3.5E-13 1.2E-17 134.4 24.8 240 38-301 164-443 (741)
210 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.1E-12 3.7E-17 116.7 25.5 232 39-299 20-299 (314)
211 1yiq_A Quinohemoprotein alcoho 99.6 3.9E-12 1.3E-16 124.8 30.4 308 4-328 72-536 (689)
212 2qc5_A Streptogramin B lactona 99.6 6.5E-12 2.2E-16 110.8 29.1 237 80-341 19-260 (300)
213 1xip_A Nucleoporin NUP159; bet 99.6 2E-13 6.9E-18 122.6 18.2 179 124-327 39-230 (388)
214 1kb0_A Quinohemoprotein alcoho 99.6 1.8E-12 6E-17 127.0 26.3 299 4-326 79-535 (677)
215 3dr2_A Exported gluconolactona 99.6 1.7E-12 5.8E-17 114.9 23.9 233 79-335 43-301 (305)
216 2ghs_A AGR_C_1268P; regucalcin 99.5 1.3E-11 4.5E-16 110.2 29.7 227 82-330 50-291 (326)
217 1xip_A Nucleoporin NUP159; bet 99.5 3E-13 1E-17 121.5 18.9 174 81-286 38-231 (388)
218 3hrp_A Uncharacterized protein 99.5 7.5E-12 2.6E-16 115.1 28.7 236 37-297 131-408 (409)
219 3hxj_A Pyrrolo-quinoline quino 99.5 1.1E-12 3.7E-17 117.6 20.1 290 5-341 33-324 (330)
220 3g4e_A Regucalcin; six bladed 99.5 3.1E-11 1E-15 106.3 26.6 218 46-287 20-260 (297)
221 1mda_H Methylamine dehydrogena 99.5 5E-12 1.7E-16 113.3 20.4 268 14-319 47-365 (368)
222 2qe8_A Uncharacterized protein 99.4 3.3E-11 1.1E-15 108.5 24.3 244 81-338 17-318 (343)
223 3iuj_A Prolyl endopeptidase; h 99.4 1.6E-11 5.6E-16 121.2 24.2 239 37-302 129-408 (693)
224 3iuj_A Prolyl endopeptidase; h 99.4 5.1E-12 1.7E-16 124.9 20.3 241 80-342 128-406 (693)
225 1mda_H Methylamine dehydrogena 99.4 2.2E-12 7.5E-17 115.7 15.5 250 62-344 47-349 (368)
226 3dr2_A Exported gluconolactona 99.4 6.6E-11 2.3E-15 104.7 24.0 222 40-293 48-301 (305)
227 2ghs_A AGR_C_1268P; regucalcin 99.4 1.8E-10 6.1E-15 102.8 25.2 215 46-287 56-290 (326)
228 1kb0_A Quinohemoprotein alcoho 99.4 2E-10 7E-15 112.5 25.4 243 4-251 130-509 (677)
229 1fwx_A Nitrous oxide reductase 99.4 3.3E-10 1.1E-14 105.7 25.0 290 4-330 17-407 (595)
230 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.4E-09 4.8E-14 99.2 28.1 268 49-344 52-340 (376)
231 2ece_A 462AA long hypothetical 99.3 3.3E-09 1.1E-13 95.5 28.7 219 90-329 93-399 (462)
232 2hz6_A Endoplasmic reticulum t 99.3 6.7E-13 2.3E-17 120.6 4.4 202 91-323 8-216 (369)
233 2hz6_A Endoplasmic reticulum t 99.3 2.5E-14 8.4E-19 130.0 -5.9 254 49-340 8-278 (369)
234 1kv9_A Type II quinohemoprotei 99.3 4.2E-09 1.5E-13 103.1 30.5 301 5-328 69-519 (668)
235 1yiq_A Quinohemoprotein alcoho 99.3 7.4E-10 2.5E-14 108.7 24.9 243 4-251 123-507 (689)
236 2ad6_A Methanol dehydrogenase 99.2 6.4E-09 2.2E-13 99.7 27.7 296 5-326 65-522 (571)
237 1npe_A Nidogen, entactin; glyc 99.2 1.7E-08 5.9E-13 87.1 28.1 240 61-323 10-263 (267)
238 2ece_A 462AA long hypothetical 99.2 1.2E-08 4.1E-13 92.0 26.4 255 13-287 43-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 99.2 4.5E-10 1.5E-14 100.5 17.1 252 50-340 30-283 (330)
240 2qe8_A Uncharacterized protein 99.2 1.1E-09 3.8E-14 98.4 18.2 247 38-296 18-318 (343)
241 1w6s_A Methanol dehydrogenase 99.2 5.7E-08 2E-12 93.0 30.2 299 5-329 65-535 (599)
242 4a2l_A BT_4663, two-component 99.2 2.4E-07 8.2E-12 93.2 35.7 300 11-342 191-527 (795)
243 1flg_A Protein (quinoprotein e 99.2 3.1E-08 1.1E-12 95.0 27.7 303 13-337 78-557 (582)
244 2fp8_A Strictosidine synthase; 99.1 8.5E-08 2.9E-12 85.3 25.9 237 81-340 19-312 (322)
245 1fwx_A Nitrous oxide reductase 99.1 9.1E-09 3.1E-13 96.1 19.3 237 5-250 105-432 (595)
246 2iwa_A Glutamine cyclotransfer 99.1 3E-08 1E-12 83.9 20.2 206 23-250 9-238 (266)
247 1npe_A Nidogen, entactin; glyc 99.1 2.2E-07 7.5E-12 80.1 26.3 239 13-279 10-260 (267)
248 2iwa_A Glutamine cyclotransfer 99.0 8.5E-08 2.9E-12 81.2 21.2 203 113-341 10-237 (266)
249 4a2l_A BT_4663, two-component 99.0 2.6E-06 9E-11 85.6 35.8 297 12-341 234-571 (795)
250 3nol_A Glutamine cyclotransfer 99.0 1.9E-07 6.5E-12 78.0 22.7 190 114-329 33-243 (262)
251 1kv9_A Type II quinohemoprotei 99.0 9E-08 3.1E-12 93.7 24.1 243 4-251 119-490 (668)
252 3nok_A Glutaminyl cyclase; bet 98.9 2.5E-07 8.5E-12 77.3 20.7 189 113-328 44-252 (268)
253 2ad6_A Methanol dehydrogenase 98.9 3.8E-07 1.3E-11 87.4 24.8 241 4-251 117-496 (571)
254 2p4o_A Hypothetical protein; p 98.9 1.2E-06 4.1E-11 77.1 26.1 227 81-331 32-278 (306)
255 3nol_A Glutamine cyclotransfer 98.9 1.6E-07 5.5E-12 78.5 18.9 180 40-239 46-245 (262)
256 1ijq_A LDL receptor, low-densi 98.9 8.3E-06 2.8E-10 72.0 30.9 239 61-319 10-258 (316)
257 3v65_B Low-density lipoprotein 98.9 3.2E-06 1.1E-10 76.9 28.4 240 61-321 96-340 (386)
258 3mbr_X Glutamine cyclotransfer 98.9 1.8E-06 6.1E-11 71.6 24.0 190 114-329 11-222 (243)
259 3v9f_A Two-component system se 98.9 6E-06 2.1E-10 82.8 32.7 301 14-342 231-569 (781)
260 3v64_C Agrin; beta propeller, 98.9 7.8E-06 2.7E-10 73.2 29.8 239 61-320 53-296 (349)
261 2fp8_A Strictosidine synthase; 98.8 2.9E-06 9.9E-11 75.3 25.9 227 46-299 26-313 (322)
262 3v9f_A Two-component system se 98.8 2.1E-05 7.1E-10 78.9 34.9 310 12-343 136-480 (781)
263 3p5b_L Low density lipoprotein 98.8 1.9E-05 6.4E-10 72.1 31.3 242 61-321 92-342 (400)
264 2p4o_A Hypothetical protein; p 98.8 9.7E-06 3.3E-10 71.3 27.6 236 39-290 34-279 (306)
265 1k3i_A Galactose oxidase precu 98.8 3.2E-07 1.1E-11 89.9 19.5 256 14-288 220-530 (656)
266 3mbr_X Glutamine cyclotransfer 98.8 1.8E-06 6E-11 71.6 20.6 192 25-238 11-223 (243)
267 3nok_A Glutaminyl cyclase; bet 98.8 1.7E-06 6E-11 72.2 19.7 172 46-238 62-254 (268)
268 1w6s_A Methanol dehydrogenase 98.7 4.3E-06 1.5E-10 80.1 24.9 240 5-251 124-505 (599)
269 1flg_A Protein (quinoprotein e 98.7 5.3E-06 1.8E-10 79.6 24.8 289 49-345 68-520 (582)
270 1k3i_A Galactose oxidase precu 98.7 1.5E-06 5.2E-11 85.2 19.4 241 84-342 189-498 (656)
271 3sov_A LRP-6, low-density lipo 98.6 4.7E-05 1.6E-09 67.1 26.7 238 61-321 13-260 (318)
272 3qqz_A Putative uncharacterize 98.6 2.1E-05 7.3E-10 66.1 23.2 202 34-246 24-250 (255)
273 3v64_C Agrin; beta propeller, 98.6 0.00013 4.6E-09 65.2 29.2 233 81-338 34-272 (349)
274 3v65_B Low-density lipoprotein 98.6 0.0001 3.6E-09 66.9 28.8 233 82-339 78-316 (386)
275 1ijq_A LDL receptor, low-densi 98.6 0.00019 6.4E-09 63.3 29.6 218 13-250 10-239 (316)
276 3qqz_A Putative uncharacterize 98.6 3.2E-05 1.1E-09 65.0 23.2 202 117-337 21-249 (255)
277 3amr_A 3-phytase; beta-propell 98.6 3.5E-05 1.2E-09 67.3 23.0 201 91-308 39-273 (355)
278 2xe4_A Oligopeptidase B; hydro 98.6 1.3E-05 4.5E-10 79.7 23.2 195 38-247 175-398 (751)
279 3tc9_A Hypothetical hydrolase; 98.5 2.7E-05 9.4E-10 71.8 23.5 239 82-338 138-427 (430)
280 4hw6_A Hypothetical protein, I 98.5 9.1E-05 3.1E-09 68.3 25.9 238 82-338 140-430 (433)
281 1n7d_A LDL receptor, low-densi 98.5 1.8E-06 6.3E-11 84.7 15.0 240 61-321 386-636 (699)
282 3m0c_C LDL receptor, low-densi 98.5 0.00027 9.2E-09 70.0 30.0 240 61-319 404-652 (791)
283 3p5b_L Low density lipoprotein 98.5 0.00081 2.8E-08 61.3 30.4 219 13-250 92-321 (400)
284 2xbg_A YCF48-like protein; pho 98.4 0.0004 1.4E-08 61.5 27.5 267 37-338 36-319 (327)
285 3s94_A LRP-6, low-density lipo 98.4 0.0017 5.9E-08 62.7 32.3 113 38-153 85-202 (619)
286 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0011 3.7E-08 64.1 30.5 224 61-307 15-245 (628)
287 3sov_A LRP-6, low-density lipo 98.4 0.00057 1.9E-08 60.1 26.1 221 13-251 13-240 (318)
288 4hw6_A Hypothetical protein, I 98.4 0.00011 3.8E-09 67.7 22.2 233 40-298 142-432 (433)
289 3kya_A Putative phosphatase; s 98.3 0.00023 7.8E-09 65.9 23.4 252 82-344 140-478 (496)
290 3tc9_A Hypothetical hydrolase; 98.3 0.00018 6E-09 66.4 22.8 151 40-207 140-300 (430)
291 2xe4_A Oligopeptidase B; hydro 98.3 5.5E-05 1.9E-09 75.2 20.3 194 82-297 175-398 (751)
292 2xbg_A YCF48-like protein; pho 98.3 0.0017 5.7E-08 57.5 29.0 230 37-297 80-320 (327)
293 2xzh_A Clathrin heavy chain 1; 98.3 0.0014 4.8E-08 56.2 26.8 256 12-300 48-333 (365)
294 4a0p_A LRP6, LRP-6, low-densit 98.2 0.005 1.7E-07 59.5 36.7 179 11-210 57-239 (628)
295 3kya_A Putative phosphatase; s 98.2 0.00069 2.4E-08 62.7 23.5 240 4-251 154-477 (496)
296 3ei3_A DNA damage-binding prot 98.2 0.0099 3.4E-07 61.6 33.9 306 4-339 573-953 (1158)
297 1bpo_A Protein (clathrin); cla 98.2 0.0036 1.2E-07 56.0 28.8 216 12-251 47-291 (494)
298 3amr_A 3-phytase; beta-propell 98.1 0.001 3.5E-08 58.1 21.2 200 5-216 43-272 (355)
299 1n7d_A LDL receptor, low-densi 98.1 6.5E-05 2.2E-09 73.8 15.5 219 13-250 386-615 (699)
300 3m0c_C LDL receptor, low-densi 98.1 0.0068 2.3E-07 60.1 29.4 218 13-250 404-633 (791)
301 2p9w_A MAL S 1 allergenic prot 98.1 0.0014 4.6E-08 56.9 21.1 158 80-249 12-215 (334)
302 2vpj_A Kelch-like protein 12; 98.0 0.0018 6.3E-08 56.4 22.0 221 91-332 14-264 (301)
303 3s94_A LRP-6, low-density lipo 98.0 0.013 4.6E-07 56.5 34.6 280 40-342 174-511 (619)
304 2p9w_A MAL S 1 allergenic prot 98.0 0.0023 7.8E-08 55.5 21.2 204 119-341 9-265 (334)
305 2ism_A Putative oxidoreductase 98.0 0.0056 1.9E-07 54.7 24.9 238 81-329 31-333 (352)
306 2xzh_A Clathrin heavy chain 1; 98.0 0.0063 2.2E-07 52.3 30.8 261 61-340 49-331 (365)
307 3ei3_A DNA damage-binding prot 97.9 0.022 7.4E-07 59.1 31.3 131 14-152 493-635 (1158)
308 2vpj_A Kelch-like protein 12; 97.9 0.0033 1.1E-07 54.8 21.2 217 61-301 31-280 (301)
309 2xn4_A Kelch-like protein 2; s 97.9 0.0036 1.2E-07 54.6 21.3 218 92-333 16-263 (302)
310 2xn4_A Kelch-like protein 2; s 97.9 0.004 1.4E-07 54.3 21.4 216 61-301 30-278 (302)
311 1bpo_A Protein (clathrin); cla 97.8 0.019 6.5E-07 51.5 30.9 263 61-341 48-331 (494)
312 3ii7_A Kelch-like protein 7; p 97.8 0.016 5.4E-07 50.5 23.5 217 61-301 24-274 (306)
313 2g8s_A Glucose/sorbosone dehyd 97.7 0.018 6.3E-07 51.3 23.6 237 81-327 18-339 (353)
314 3sre_A PON1, serum paraoxonase 97.7 0.024 8.3E-07 50.2 24.8 226 81-325 50-328 (355)
315 3a9g_A Putative uncharacterize 97.7 0.026 9.1E-07 50.2 23.8 239 81-329 29-330 (354)
316 3ii7_A Kelch-like protein 7; p 97.6 0.028 9.7E-07 48.9 24.6 225 3-250 13-273 (306)
317 1zgk_A Kelch-like ECH-associat 97.6 0.013 4.3E-07 51.2 20.4 218 91-332 24-273 (308)
318 1zgk_A Kelch-like ECH-associat 97.6 0.015 5E-07 50.8 20.6 216 61-301 39-289 (308)
319 3pbp_A Nucleoporin NUP82; beta 97.6 0.0027 9.3E-08 56.7 15.1 152 48-205 30-209 (452)
320 4asc_A Kelch repeat and BTB do 97.5 0.016 5.3E-07 50.8 20.4 223 2-250 5-278 (315)
321 2be1_A Serine/threonine-protei 97.5 0.0046 1.6E-07 54.3 16.0 115 2-120 10-139 (339)
322 1xi4_A Clathrin heavy chain; a 97.5 0.0066 2.3E-07 62.6 19.0 190 46-251 73-291 (1630)
323 2uvk_A YJHT; unknown function, 97.5 0.014 4.7E-07 52.2 19.8 236 49-307 19-350 (357)
324 3pbp_A Nucleoporin NUP82; beta 97.4 0.0093 3.2E-07 53.3 17.0 135 198-335 40-206 (452)
325 2ism_A Putative oxidoreductase 97.4 0.043 1.5E-06 48.9 21.9 235 39-287 33-333 (352)
326 4asc_A Kelch repeat and BTB do 97.4 0.052 1.8E-06 47.4 22.1 217 61-301 13-279 (315)
327 3das_A Putative oxidoreductase 97.4 0.062 2.1E-06 47.3 27.6 245 80-329 31-326 (347)
328 1xi4_A Clathrin heavy chain; a 97.3 0.024 8.1E-07 58.7 20.3 262 61-340 48-330 (1630)
329 2woz_A Kelch repeat and BTB do 97.2 0.041 1.4E-06 48.2 19.2 225 2-250 16-288 (318)
330 3sre_A PON1, serum paraoxonase 97.2 0.06 2.1E-06 47.6 19.9 196 124-339 51-296 (355)
331 2woz_A Kelch repeat and BTB do 97.2 0.094 3.2E-06 45.8 21.4 216 62-301 25-289 (318)
332 3ott_A Two-component system se 97.2 0.21 7.2E-06 49.7 30.5 294 14-339 122-446 (758)
333 2uvk_A YJHT; unknown function, 97.2 0.041 1.4E-06 49.1 19.0 126 199-332 168-327 (357)
334 2be1_A Serine/threonine-protei 97.1 0.021 7.2E-07 50.1 15.8 197 92-304 10-236 (339)
335 3a9g_A Putative uncharacterize 97.0 0.19 6.5E-06 44.7 22.7 231 38-287 30-330 (354)
336 3ott_A Two-component system se 96.8 0.52 1.8E-05 46.8 31.3 289 14-342 83-402 (758)
337 2zwa_A Leucine carboxyl methyl 96.7 0.16 5.6E-06 49.8 20.2 217 13-237 412-673 (695)
338 2zwa_A Leucine carboxyl methyl 96.7 0.25 8.4E-06 48.5 21.3 200 90-303 396-639 (695)
339 1tl2_A L10, protein (tachylect 96.6 0.032 1.1E-06 45.0 11.7 145 81-244 41-205 (236)
340 2g8s_A Glucose/sorbosone dehyd 96.3 0.53 1.8E-05 41.8 21.8 101 39-142 20-149 (353)
341 3qhy_B Beta-lactamase inhibito 96.2 0.51 1.7E-05 40.3 20.7 223 80-341 23-246 (282)
342 1cru_A Protein (soluble quinop 96.1 0.3 1E-05 45.1 16.7 109 175-287 26-162 (454)
343 1tl2_A L10, protein (tachylect 96.0 0.46 1.6E-05 38.4 16.3 110 123-244 41-158 (236)
344 3sbq_A Nitrous-oxide reductase 95.8 1.3 4.4E-05 41.4 22.2 112 123-237 323-453 (638)
345 3sbq_A Nitrous-oxide reductase 95.4 1.7 5.9E-05 40.5 27.6 301 4-335 72-459 (638)
346 3das_A Putative oxidoreductase 95.4 1.3 4.5E-05 38.9 17.4 150 175-327 31-218 (347)
347 3s25_A Hypothetical 7-bladed b 95.0 1.6 5.4E-05 37.6 23.0 238 46-329 21-280 (302)
348 1cru_A Protein (soluble quinop 94.6 2.7 9.3E-05 38.6 28.3 60 81-140 27-97 (454)
349 3b7f_A Glycosyl hydrolase, BNR 94.5 2.6 8.7E-05 37.9 24.7 134 177-319 233-391 (394)
350 3qhy_B Beta-lactamase inhibito 94.2 2.3 7.8E-05 36.2 21.5 221 61-321 42-264 (282)
351 1suu_A DNA gyrase subunit A; t 93.6 3.2 0.00011 35.9 25.5 205 89-298 5-230 (312)
352 2wg3_C Hedgehog-interacting pr 93.5 4.6 0.00016 37.2 21.3 53 81-133 14-79 (463)
353 3b7f_A Glycosyl hydrolase, BNR 92.9 4.9 0.00017 36.0 23.3 153 79-245 53-258 (394)
354 3uc1_A DNA gyrase subunit A; D 92.6 4.8 0.00016 35.0 24.0 209 82-298 43-278 (327)
355 3s25_A Hypothetical 7-bladed b 92.3 5 0.00017 34.5 22.1 175 46-250 60-256 (302)
356 1suu_A DNA gyrase subunit A; t 92.0 5.5 0.00019 34.4 25.4 194 48-250 6-232 (312)
357 3l6v_A GYRA, DNA gyrase subuni 91.8 6.5 0.00022 34.8 24.6 159 88-250 3-181 (370)
358 3uc1_A DNA gyrase subunit A; D 90.7 7.8 0.00027 33.7 21.8 243 93-340 4-278 (327)
359 3kci_A Probable E3 ubiquitin-p 90.4 9.4 0.00032 34.1 24.7 212 81-299 105-345 (389)
360 1zi0_A DNA gyrase subunit A; b 89.7 9.2 0.00032 32.9 25.6 210 80-298 41-276 (307)
361 1zi0_A DNA gyrase subunit A; b 89.6 9.3 0.00032 32.9 24.7 245 90-339 1-275 (307)
362 1wp5_A Topoisomerase IV; broke 89.1 10 0.00036 32.8 24.9 204 90-298 3-224 (323)
363 3l6v_A GYRA, DNA gyrase subuni 88.7 12 0.00042 33.1 25.4 195 47-250 4-266 (370)
364 4hvt_A Ritya.17583.B, post-pro 88.2 21 0.00071 35.0 19.9 231 83-325 131-410 (711)
365 1wp5_A Topoisomerase IV; broke 87.7 13 0.00045 32.2 24.8 212 80-298 38-276 (323)
366 4gq2_M Nucleoporin NUP120; bet 86.5 31 0.001 35.2 21.2 37 271-307 237-274 (950)
367 2wg3_C Hedgehog-interacting pr 86.2 11 0.00037 34.7 12.5 111 219-332 14-160 (463)
368 2akf_A Coronin-1A; coiled coil 85.4 2.2 7.5E-05 21.0 4.8 26 407-432 3-28 (32)
369 3no0_A DNA gyrase subunit A; D 84.8 17 0.00058 30.7 22.7 205 123-340 24-245 (276)
370 3zwu_A Alkaline phosphatase PH 84.6 17 0.00058 34.5 13.2 58 271-328 477-548 (592)
371 3kci_A Probable E3 ubiquitin-p 84.3 22 0.00076 31.7 26.9 248 82-340 54-344 (389)
372 1t6f_A Geminin; coiled-coil, c 80.4 4.6 0.00016 21.1 4.8 30 402-431 6-35 (37)
373 4a9v_A PHOX; hydrolase, beta-p 79.7 37 0.0013 32.0 13.2 60 270-329 476-549 (592)
374 4gq2_M Nucleoporin NUP120; bet 75.6 74 0.0025 32.4 18.9 38 177-216 237-274 (950)
375 3mvd_K Regulator of chromosome 71.9 56 0.0019 29.4 31.0 243 81-340 75-373 (423)
376 4fhn_B Nucleoporin NUP120; pro 71.6 10 0.00035 39.6 8.2 37 271-307 239-276 (1139)
377 1sqj_A OXG-RCBH, oligoxylogluc 70.5 89 0.003 31.0 20.8 151 122-289 14-190 (789)
378 3f7f_A Nucleoporin NUP120; nuc 68.2 46 0.0016 32.4 11.0 36 82-119 223-258 (729)
379 4fhn_B Nucleoporin NUP120; pro 68.2 74 0.0025 33.2 13.7 37 178-216 240-276 (1139)
380 2yy0_A C-MYC-binding protein; 67.2 16 0.00055 21.6 5.0 29 404-432 20-48 (53)
381 3zwu_A Alkaline phosphatase PH 65.4 18 0.00062 34.3 7.7 59 82-140 477-548 (592)
382 3no0_A DNA gyrase subunit A; D 64.0 64 0.0022 27.0 25.8 165 79-250 66-247 (276)
383 4a9v_A PHOX; hydrolase, beta-p 62.2 32 0.0011 32.4 8.5 61 81-141 476-549 (592)
384 3q6k_A 43.2 kDa salivary prote 60.7 90 0.0031 27.7 19.3 142 61-208 123-306 (381)
385 2l5g_B Putative uncharacterize 59.4 20 0.00069 19.7 5.4 33 400-432 6-38 (42)
386 1yke_B RNA polymerase II holoe 59.1 45 0.0015 25.0 7.3 36 397-432 86-121 (151)
387 1ykh_B RNA polymerase II holoe 58.5 50 0.0017 24.0 7.4 41 397-438 86-126 (132)
388 3mvd_K Regulator of chromosome 55.3 1.2E+02 0.004 27.2 29.9 240 49-299 83-374 (423)
389 1dip_A Delta-sleep-inducing pe 55.0 11 0.00037 23.7 2.8 38 402-439 14-51 (78)
390 2yy0_A C-MYC-binding protein; 54.1 17 0.00059 21.5 3.5 28 401-428 24-51 (53)
391 4d9s_A UVB-resistance protein 53.9 1.2E+02 0.0041 27.0 30.2 249 80-340 67-356 (406)
392 3f7f_A Nucleoporin NUP120; nuc 53.9 19 0.00064 35.0 5.6 37 271-308 223-259 (729)
393 2l5g_A GPS2 protein, G protein 53.5 24 0.00081 18.7 5.3 30 401-430 6-35 (38)
394 3mq7_A Bone marrow stromal ant 53.3 35 0.0012 23.8 5.3 31 402-432 77-107 (121)
395 1go4_E MAD1 (mitotic arrest de 49.1 50 0.0017 22.6 5.6 48 402-450 11-58 (100)
396 1q47_A Semaphorin 3A; beta pro 48.2 1.1E+02 0.0037 28.3 9.7 68 177-244 405-487 (495)
397 4d9s_A UVB-resistance protein 47.4 1.5E+02 0.0053 26.3 26.5 209 80-299 120-357 (406)
398 1sqj_A OXG-RCBH, oligoxylogluc 47.2 2.2E+02 0.0077 28.1 24.5 61 80-141 14-83 (789)
399 3oja_B Anopheles plasmodium-re 46.8 29 0.00099 33.1 6.0 17 434-450 574-590 (597)
400 3al9_A Plexin-A2; beta-propell 46.2 70 0.0024 30.0 8.2 68 177-244 401-476 (539)
401 4hvt_A Ritya.17583.B, post-pro 45.6 2.3E+02 0.0077 27.7 22.4 232 46-298 137-429 (711)
402 2jee_A YIIU; FTSZ, septum, coi 43.1 67 0.0023 20.9 5.6 19 411-429 56-74 (81)
403 3q6k_A 43.2 kDa salivary prote 42.9 1.8E+02 0.0061 25.8 21.8 150 175-328 151-341 (381)
404 1hjb_A Ccaat/enhancer binding 41.2 76 0.0026 21.0 5.4 32 401-432 41-72 (87)
405 1uii_A Geminin; human, DNA rep 34.2 97 0.0033 20.2 6.0 32 401-432 44-75 (83)
406 1hjb_A Ccaat/enhancer binding 33.6 62 0.0021 21.5 4.1 31 401-431 48-78 (87)
407 2wvr_A Geminin; DNA replicatio 32.3 1.5E+02 0.005 23.2 6.4 40 402-441 121-162 (209)
408 1ezj_A Nucleocapsid phosphopro 32.3 1.1E+02 0.0039 20.4 6.2 33 402-434 65-97 (115)
409 1wlq_A Geminin; coiled-coil; 2 32.1 1.1E+02 0.0036 20.0 5.5 28 403-430 38-65 (83)
410 1x4t_A Hypothetical protein LO 32.0 1.1E+02 0.0037 20.5 4.9 33 397-429 46-78 (92)
411 3ol2_B Plexin-B1; beta-propell 31.9 2.2E+02 0.0076 26.5 9.0 67 178-244 389-461 (528)
412 4gz8_A Semaphorin-3A; multi-do 30.1 3.1E+02 0.011 26.5 9.9 55 190-244 430-495 (667)
413 3lay_A Zinc resistance-associa 29.8 84 0.0029 24.2 4.9 7 290-296 14-20 (175)
414 1zvt_A Topoisomerase IV subuni 28.2 2.5E+02 0.0085 23.1 20.2 149 94-250 4-164 (256)
415 1kd8_B GABH BLL, GCN4 acid bas 28.1 71 0.0024 16.8 4.9 24 403-426 8-31 (36)
416 3of7_A Regulator of chromosome 27.9 3.5E+02 0.012 24.6 26.3 156 81-249 148-341 (473)
417 1g6u_A Domain swapped dimer; d 27.9 75 0.0026 16.9 4.7 15 404-418 28-42 (48)
418 3mez_B Mannose-specific lectin 27.9 1.5E+02 0.0052 20.5 10.1 58 50-110 24-83 (113)
419 1a93_A Coiled coil, LZ, MYC pr 27.2 75 0.0026 16.7 4.8 23 410-432 7-29 (34)
420 4dzo_A Mitotic spindle assembl 27.1 1.6E+02 0.0054 21.1 5.6 26 404-429 5-30 (123)
421 3twe_A Alpha4H; unknown functi 27.1 55 0.0019 15.2 4.1 7 407-413 12-18 (27)
422 1gk6_A Vimentin; intermediate 25.6 1.1E+02 0.0039 18.3 5.8 28 404-431 8-35 (59)
423 3nmd_A CGMP dependent protein 25.6 1.3E+02 0.0045 19.0 5.7 24 405-428 42-65 (72)
424 1lwu_C Fibrinogen gamma chain; 25.6 1.2E+02 0.0042 26.0 5.7 33 401-433 24-56 (323)
425 1gk4_A Vimentin; intermediate 25.5 1.4E+02 0.005 19.4 6.3 33 401-433 31-63 (84)
426 1zvu_A Topoisomerase IV subuni 25.3 4.8E+02 0.016 25.4 12.4 183 2-203 472-683 (716)
427 2cn3_A Xyloglucanase, beta-1,4 25.1 4.9E+02 0.017 25.4 15.2 107 176-289 23-153 (737)
428 4gz8_A Semaphorin-3A; multi-do 25.0 2.1E+02 0.0071 27.7 7.7 62 231-294 430-495 (667)
429 4etp_A Kinesin-like protein KA 25.0 1.5E+02 0.0051 26.5 6.4 47 385-433 8-54 (403)
430 1ci6_A Transcription factor AT 24.3 1.3E+02 0.0044 18.4 6.0 28 403-430 30-57 (63)
431 1fmh_A General control protein 24.0 74 0.0025 15.5 4.1 8 407-414 5-12 (33)
432 1gu4_A CAAT/enhancer binding p 23.8 1.3E+02 0.0044 19.5 4.2 28 402-429 42-69 (78)
433 3mov_A Lamin-B1; LMNB1, B-type 23.6 1.7E+02 0.006 19.7 6.3 50 383-432 22-73 (95)
434 1nkp_A C-MYC, MYC proto-oncoge 23.2 1.7E+02 0.0057 19.4 5.3 27 406-432 55-81 (88)
435 1a12_A RCC1, regulator of chro 23.0 3.9E+02 0.014 23.6 31.3 244 80-340 58-364 (413)
436 3caz_A BAR protein; thermo-aci 22.8 1.9E+02 0.0064 22.1 5.5 27 403-429 98-124 (294)
437 2xv5_A Lamin-A/C; structural p 22.8 1.6E+02 0.0053 18.8 6.0 24 407-430 16-39 (74)
438 2wvr_A Geminin; DNA replicatio 22.8 2.3E+02 0.008 22.1 6.0 17 402-418 128-144 (209)
439 1nkp_B MAX protein, MYC proto- 22.6 1.6E+02 0.0056 19.0 5.0 27 406-432 50-76 (83)
440 3mez_A Mannose-specific lectin 22.2 2E+02 0.0068 19.8 8.2 24 84-108 52-75 (111)
441 3oky_A Plexin-A2; transmembran 21.9 2.5E+02 0.0085 27.2 7.6 67 178-244 401-475 (681)
442 1t2k_D Cyclic-AMP-dependent tr 21.7 1.4E+02 0.0048 18.0 5.5 28 403-430 29-56 (61)
443 3oky_B Putative uncharacterize 21.4 3.9E+02 0.013 25.2 8.5 67 271-337 404-496 (565)
444 3nvq_A Semaphorin-7A; beta-pro 21.4 3E+02 0.01 26.1 7.8 62 231-295 381-445 (590)
445 1q47_A Semaphorin 3A; beta pro 21.3 2.7E+02 0.0094 25.7 7.6 67 82-148 405-487 (495)
446 3m48_A General control protein 21.2 99 0.0034 16.0 4.2 21 403-423 7-27 (33)
447 3al9_A Plexin-A2; beta-propell 21.0 1E+02 0.0035 28.9 4.7 66 271-336 401-476 (539)
448 2xdj_A Uncharacterized protein 20.4 1.9E+02 0.0065 18.9 5.5 33 400-432 31-63 (83)
449 2lh0_A Histone chaperone RTT10 20.1 1.6E+02 0.0054 18.5 3.8 29 406-434 14-42 (70)
450 3nvn_B Plexin-C1; beta-propell 20.1 5E+02 0.017 23.7 9.0 68 177-244 341-416 (476)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6e-49 Score=365.36 Aligned_cols=281 Identities=19% Similarity=0.346 Sum_probs=260.5
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
+|...|.+++ |+|+++++++++.| |+|++||+.++..... ..|.+.|.+++|+|++++|++|+.||.|++||+.++
T Consensus 106 gh~~~V~~~~--~~p~~~~l~s~s~D-g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~ 182 (410)
T 1vyh_C 106 GHRSPVTRVI--FHPVFSVMVSASED-ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182 (410)
T ss_dssp CCSSCEEEEE--ECSSSSEEEEEESS-SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred ccCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence 4667899999 99999999999998 9999999998776543 558899999999999999999999999999999999
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+ ...+..+.+|...|.++.+++++ .++
T Consensus 183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~g--~~l 249 (410)
T 1vyh_C 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-----------GYCVKTFTGHREWVRMVRPNQDG--TLI 249 (410)
T ss_dssp CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECTTS--SEE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEeCCCccEEEEEECCCC--CEE
Confidence 99999999999999999999999999999999999999954 44677788999999999999988 899
Q ss_pred EEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCC--------------------CCEEEEEeCCCcEEEEEccCCC
Q 012996 193 VSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPA--------------------EHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
++++.|+.|++||+.+++....+. |...|.+++|+|+ +.+|++|+.|+.|++||++++
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~- 328 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG- 328 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-
T ss_pred EEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-
Confidence 999999999999999998888776 8889999999996 678999999999999999876
Q ss_pred CCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccC
Q 012996 252 PSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSF 330 (451)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~ 330 (451)
..+..+.+|...|++++|+| +.+|++|+.||.|++||+.+++++.++.+|...|++++|+|++.+|++|+.
T Consensus 329 --------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~ 400 (410)
T 1vyh_C 329 --------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400 (410)
T ss_dssp --------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred --------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC
Confidence 56778889999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 012996 331 SNPHTSSRR 339 (451)
Q Consensus 331 d~~i~iw~~ 339 (451)
||.|++|+.
T Consensus 401 D~~i~vW~~ 409 (410)
T 1vyh_C 401 DQTVKVWEC 409 (410)
T ss_dssp TSEEEEEC-
T ss_pred CCcEEEEeC
Confidence 999999985
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-48 Score=347.73 Aligned_cols=285 Identities=19% Similarity=0.254 Sum_probs=258.6
Q ss_pred ecCCCCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECCCCcEEEEeccCC
Q 012996 30 KSCASPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANSHGTYIAGGGQSG 102 (451)
Q Consensus 30 ~~~~~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg 102 (451)
+...+|...|.+++ |+|+ +.++++++.| ++|++|++....... ...|...|.+++|+|++.++++++.|+
T Consensus 26 ~~~~~H~~~V~~v~--~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 26 KQEQAHDDAIWSVA--WGTNKKENSETVVTGSLD-DLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EETTSSSSCEEEEE--EC-------CEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred eecccCCCcEEEEE--EecCCCCCCCEEEEEcCC-CCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 34456778999999 9875 5689999988 999999998765432 346889999999999999999999999
Q ss_pred CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++.+ ......+..|...|.+++
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-----------~~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-----------GKKEYSLDTRGKFILSIA 171 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-----------CSEEEEEECSSSCEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-----------CceeEEecCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999954 334566778889999999
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCcee
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHI 261 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 261 (451)
|+|++ ++|++++.||.|++||+++++.+..+. |...|.+++|+|++.+|++|+.||.|++||++.. ..
T Consensus 172 ~spdg--~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---------~~ 240 (321)
T 3ow8_A 172 YSPDG--KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---------NL 240 (321)
T ss_dssp ECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---------CE
T ss_pred ECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---------ce
Confidence 99998 899999999999999999999988887 7889999999999999999999999999999875 45
Q ss_pred eeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 262 IGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
...+.+|...|.+++|+| +.+|++|+.||+|++||+.+++++.++..|.+.|.+++|+|++.+|++++.||.|++|+.
T Consensus 241 ~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 678889999999999999 999999999999999999999999999999999999999999999999999999999995
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.1e-47 Score=371.99 Aligned_cols=318 Identities=16% Similarity=0.211 Sum_probs=262.7
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee------
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------ 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~------ 77 (451)
+|++|+ .|++|++||..+++....+.+ |...|.+++ |+|+|+++++++.| ++|++||..++......
T Consensus 162 ~l~s~s-~D~~v~lwd~~~~~~~~~l~~---H~~~V~~v~--fspdg~~las~s~D-~~i~lwd~~~g~~~~~~~~~~~~ 234 (611)
T 1nr0_A 162 RIISGS-DDNTVAIFEGPPFKFKSTFGE---HTKFVHSVR--YNPDGSLFASTGGD-GTIVLYNGVDGTKTGVFEDDSLK 234 (611)
T ss_dssp EEEEEE-TTSCEEEEETTTBEEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEECBCTTSS
T ss_pred EEEEEe-CCCeEEEEECCCCeEeeeecc---ccCceEEEE--ECCCCCEEEEEECC-CcEEEEECCCCcEeeeecccccc
Confidence 689999 999999999999888877765 557788888 99999999999998 99999999877765433
Q ss_pred --cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee---------------------------------------
Q 012996 78 --LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK--------------------------------------- 116 (451)
Q Consensus 78 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------------------- 116 (451)
.|.+.|.+++|+|++++|++|+.|+.|++||+.+++++.
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 588999999999999999999999999999998775443
Q ss_pred ----eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc-----------------------------
Q 012996 117 ----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA----------------------------- 163 (451)
Q Consensus 117 ----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~----------------------------- 163 (451)
.+.+|...|++++|+|++++|++++.|+.|++||+.++.........
T Consensus 315 ~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~ 394 (611)
T 1nr0_A 315 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 394 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred CcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEee
Confidence 33578999999999999999999999999999998754221100000
Q ss_pred ---------------------------cc-c---------------ceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 164 ---------------------------SH-L---------------YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 164 ---------------------------~~-~---------------~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
.. . .+..+ .|...+.+++|+|++ .+|++|+.|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg--~~lasgs~D~~ 471 (611)
T 1nr0_A 395 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDK--QFVAVGGQDSK 471 (611)
T ss_dssp SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTS--CEEEEEETTSE
T ss_pred cCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCC--CEEEEeCCCCe
Confidence 00 0 00011 144567889999998 89999999999
Q ss_pred EEEEEcCCCce--eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEE
Q 012996 201 CKVWSLLKGRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLA 276 (451)
Q Consensus 201 i~iwd~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~ 276 (451)
|++||+.++.. .....|...|.+++|+|++++|++++.|+.|++|++.+.. ..... ..+|...|++++
T Consensus 472 v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--------~~~~~~~~~~H~~~V~~v~ 543 (611)
T 1nr0_A 472 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--------ELAHTNSWTFHTAKVACVS 543 (611)
T ss_dssp EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--------EESCCCCCCCCSSCEEEEE
T ss_pred EEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--------ceeeeeeeeecccceeEEE
Confidence 99999987653 2344588999999999999999999999999999998732 22222 345999999999
Q ss_pred Eec-CCEEEEEcCCCcEEEEeCCCCc-eE-EEeecC-CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 277 YST-GDLLISGSEDGMVRVWDPITHN-IV-RMFRLA-KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 277 ~~~-~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~-~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|+| +.+|++|+.|++|++||+.++. .+ ..+.+| .+.|.+++|+|+++ |++++.|++|++|++.
T Consensus 544 fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 544 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999 9999999999999999998865 33 567788 89999999999998 9999999999999963
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.4e-48 Score=348.20 Aligned_cols=299 Identities=20% Similarity=0.250 Sum_probs=239.1
Q ss_pred eEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC------------CceeeeecCCCC
Q 012996 15 IGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK------------PQVEVKSLPAEP 82 (451)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~------------~~~~~~~~~~~~ 82 (451)
.+.|++....+. .+...|.+++ |+|+|++|++++ + +++++||... ........+...
T Consensus 16 ~r~w~~~~~~~~-------~~~~~v~~~~--fs~dG~~l~~~s-d-~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (344)
T 4gqb_B 16 AREWNLPPNAPA-------CMERQLEAAR--YRSDGALLLGAS-S-LSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAG 84 (344)
T ss_dssp -------CCSCS-------SCCSEEEEEE--ECTTSCEEEEEE-C-CSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSC
T ss_pred ccccCCCCCCcc-------cccCCEEEEE--ECCCCCEEEEEe-C-CceEEeeceeeeeccccccCCcceeeeeeccCCC
Confidence 456776544331 3456688888 999999998776 4 6777776321 111122334678
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
|.+++|+|++ .|++|+.||.|+|||+.+++.+..+ .+|.+.|++++|+|++++|++|+.||.|++||+.+
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~----- 158 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ----- 158 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-----
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-----
Confidence 9999999985 6778999999999999998766543 58999999999999999999999999999999954
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECC-CCCEEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDP-AEHVFY 234 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~ 234 (451)
...+..+.+|...|.+++|++++. .++++++.|++|++||+++++....+. +...+.+++|+| ++.+|+
T Consensus 159 ------~~~~~~~~~h~~~V~~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 159 ------QVVLSSYRAHAAQVTCVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp ------TEEEEEECCCSSCEEEEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred ------CcEEEEEcCcCCceEEEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 556788899999999999999874 588999999999999999999887765 455789999999 567889
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCCCCceEEEeecCCCC
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIVRMFRLAKGP 312 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 312 (451)
+|+.||.|++||+++. +++..+.+|...|++++|+| + .+|++|+.||+|+|||+.+++++ .+.+|.+.
T Consensus 232 sg~~dg~v~~wd~~~~---------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~ 301 (344)
T 4gqb_B 232 FGDENGTVSLVDTKST---------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF 301 (344)
T ss_dssp EEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC
T ss_pred EeccCCcEEEEECCCC---------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC
Confidence 9999999999999876 45678899999999999999 5 68999999999999999988765 56899999
Q ss_pred eeEEEEEecCce-eeeccCCCCccccccCCCCCCCc
Q 012996 313 VNNILVVRRPLY-LNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 313 v~~l~~s~~~~~-l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
|++++|+|++.. |+++|.|++|++|++....++.+
T Consensus 302 V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p 337 (344)
T 4gqb_B 302 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP 337 (344)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred EEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence 999999999875 67899999999999987655443
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.3e-47 Score=342.32 Aligned_cols=280 Identities=20% Similarity=0.326 Sum_probs=250.4
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
.+|...|.+++ |+|+++++++++.| |+|++||..++..... ..|...|.+++|+|++++|++|+.|+.|++|++.+
T Consensus 52 ~gH~~~v~~~~--~s~d~~~l~s~s~D-g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 52 RGHLAKIYAMH--WGTDSRLLLSASQD-GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp CCCSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred cCCCCceEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 35667899999 99999999999998 9999999987765533 55788999999999999999999999999999987
Q ss_pred Cc----ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 112 GR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 112 ~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
+. ....+.+|.+.|.++.|++++. +++++.|+.|++||+.+ ...+..+.+|...|.+++|+|++
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIET-----------GQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCC-----------CcEEEEEcCCCCceEEEEECCCC
Confidence 53 4566789999999999998875 88999999999999954 44567788999999999999988
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
.++++|+.|+.|++||++++.....+. |...|.+++|+|++.+|++|+.||.|++||++... .+..+.
T Consensus 197 --~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~ 265 (340)
T 1got_B 197 --RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---------ELMTYS 265 (340)
T ss_dssp --SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEEC
T ss_pred --CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---------EEEEEc
Confidence 899999999999999999999888887 78899999999999999999999999999998753 233332
Q ss_pred --cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 267 --DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 267 --~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.+...|++++|+| +.+|++|+.||.|++||+.+++.+..+.+|.++|++++|+|+|.+|++|+.||.|++|+
T Consensus 266 ~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 266 HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 3445899999999 99999999999999999999999999999999999999999999999999999999996
No 6
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.7e-47 Score=370.68 Aligned_cols=327 Identities=18% Similarity=0.247 Sum_probs=263.2
Q ss_pred EEEeecCCCCCCeEEEECccCce--eeeeecC-----------------------------------------CCCCCce
Q 012996 3 LLIASSSVADTGIGCWDLESGAE--QLRYKSC-----------------------------------------ASPPHGL 39 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~--~~~~~~~-----------------------------------------~~~~~~v 39 (451)
.+||+|+ .||+|+|||+.+++. ...+..| .+|...|
T Consensus 72 ~~lasg~-~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v 150 (611)
T 1nr0_A 72 YYCASGD-VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM 150 (611)
T ss_dssp SEEEEEE-TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred cEEEEEe-CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCc
Confidence 3789999 999999999865432 2222221 2455667
Q ss_pred EEecceEeeccCc-ccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee
Q 012996 40 ACVGQRFLASSQL-REQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK 117 (451)
Q Consensus 40 ~~~~~~~~~~~~~-l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 117 (451)
.+++ |+|++.. +++++.| ++|++||..+.+... ...|...|.+++|+|+|++|++|+.|+.|++||+.+++.+..
T Consensus 151 ~~v~--f~p~~~~~l~s~s~D-~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~ 227 (611)
T 1nr0_A 151 NSVD--FKPSRPFRIISGSDD-NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGV 227 (611)
T ss_dssp EEEE--ECSSSSCEEEEEETT-SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eEEE--ECCCCCeEEEEEeCC-CeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeee
Confidence 7777 8888875 7777777 999999987765543 345889999999999999999999999999999999998887
Q ss_pred ec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc----------------------------
Q 012996 118 WH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR---------------------------- 162 (451)
Q Consensus 118 ~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------------------------- 162 (451)
+. +|.+.|.+++|+|++++|++++.|++|++||+.++........
T Consensus 228 ~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~ 307 (611)
T 1nr0_A 228 FEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFIN 307 (611)
T ss_dssp CBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEE
T ss_pred eccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEE
Confidence 74 7999999999999999999999999999999976432111000
Q ss_pred ----ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------------------
Q 012996 163 ----ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI----------------------- 215 (451)
Q Consensus 163 ----~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------- 215 (451)
........+.+|...|.+++|+|++ .+|++++.|++|++||+.+++....+
T Consensus 308 ~~~~~~~~~~~~~~gh~~~v~~l~~spdg--~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 308 FVNPELGSIDQVRYGHNKAITALSSSADG--KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred EEeCCCCCcceEEcCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEE
Confidence 0111334567899999999999988 89999999999999999876443221
Q ss_pred ------------------------------------------------------------ecccceeEEEECCCCCEEEE
Q 012996 216 ------------------------------------------------------------VFPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 216 ------------------------------------------------------------~~~~~i~~~~~~~~~~~l~~ 235 (451)
.+...+.+++|+|++++|++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~las 465 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAV 465 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEE
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEE
Confidence 11234678999999999999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEE--eecCCC
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRM--FRLAKG 311 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~ 311 (451)
|+.|+.|++||+.... ...... .+|...|++++|+| +.+|++++.|++|++||+.+ ++++.. +..|..
T Consensus 466 gs~D~~v~lwd~~~~~-------~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~ 537 (611)
T 1nr0_A 466 GGQDSKVHVYKLSGAS-------VSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 537 (611)
T ss_dssp EETTSEEEEEEEETTE-------EEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred eCCCCeEEEEEccCCc-------eeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence 9999999999997642 122333 67999999999999 99999999999999999987 665554 345999
Q ss_pred CeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
.|.+++|+|||++|++++.|++|++|++....
T Consensus 538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 99999999999999999999999999987643
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.2e-48 Score=350.44 Aligned_cols=305 Identities=20% Similarity=0.243 Sum_probs=236.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-----CccEEEEECCCCcee----
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVE---- 74 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~g~i~vw~~~~~~~~---- 74 (451)
+++.++ .+.....|++....+ ..|...|.+++ |+|||++||+++.+ |+.|++|+..++...
T Consensus 18 ~~~~~~-g~~~~~~w~~p~~~p-------~~H~~~V~~v~--fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~ 87 (357)
T 4g56_B 18 LYFQSN-GSSKGSAWGRPVTAP-------ACMEVQIGAVR--YRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLC 87 (357)
T ss_dssp ------------------------------CCCSEEEEEE--ECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGC
T ss_pred eEEecC-CCccccccCCCCCCc-------ccccCCEEEEE--ECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEe
Confidence 344445 567778888764332 24778899999 99999999999873 388999998765432
Q ss_pred -eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee----eeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 75 -VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK----KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 75 -~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
....|...|.+++|+|++.++ +++.||.|+|||+.+++... ...+|.+.|++++|+|++++|++|+.||.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 234577889999999998755 56789999999998886543 335799999999999999999999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEE
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIAL 226 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~ 226 (451)
|+.+ ...+..+.+|...|.+++|++++. .++++++.||.|++||+++++....+. +...+.+++|
T Consensus 167 d~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~ 234 (357)
T 4g56_B 167 DLSQ-----------KAVLKSYNAHSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTW 234 (357)
T ss_dssp ETTT-----------TEEEEEECCCSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEE
T ss_pred ECCC-----------CcEEEEEcCCCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhh
Confidence 9954 456777889999999999998874 588999999999999999988776654 5677999999
Q ss_pred CCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCCCCceE
Q 012996 227 DPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 227 ~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
+|+ +.+|++|+.|+.|++||+++. ..+..+.+|...|++++|+| + .+|++|+.||+|+|||+.+++++
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~---------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNP---------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCG---------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred hhcccceEEEeecccceeEEECCCC---------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 997 568899999999999999875 45677889999999999999 4 68999999999999999999888
Q ss_pred EEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccCC
Q 012996 304 RMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 304 ~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~~ 341 (451)
..+ +|.+.|++++|+| ++.+|++++.||.|++|++..
T Consensus 306 ~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 306 RDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 765 7899999999998 899999999999999999864
No 8
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.3e-46 Score=339.93 Aligned_cols=288 Identities=19% Similarity=0.308 Sum_probs=254.2
Q ss_pred eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
...++. +|...|.+++ |+|++++|++++.| |+|++||..+..... ...|...|.+++|+|++.+|++|+.|+.
T Consensus 56 ~~~~l~---gH~~~V~~~~--~s~d~~~l~s~s~D-g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~ 129 (354)
T 2pbi_B 56 TRRTLK---GHGNKVLCMD--WCKDKRRIVSSSQD-GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129 (354)
T ss_dssp EEEEEE---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSE
T ss_pred EEEEec---CCCCeEEEEE--ECCCCCEEEEEeCC-CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCC
Confidence 344455 4667899999 99999999999998 999999988766543 3457789999999999999999999999
Q ss_pred EEEEEcCCC------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996 104 IYMWEVASG------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 104 i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (451)
+++|++... .....+.+|...|.++.|+|++..|++++.||+|++||+.+ ...+..+.+|...
T Consensus 130 i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-----------~~~~~~~~~h~~~ 198 (354)
T 2pbi_B 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-----------GQLLQSFHGHGAD 198 (354)
T ss_dssp EEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSC
T ss_pred EEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-----------CeEEEEEcCCCCC
Confidence 999998643 34566778999999999999999999999999999999954 4567788899999
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (451)
|.+++++++..+.+|++|+.||.|++||+++++.+..+. |...|.+++|+|++.+|++|+.|+.|++||++...
T Consensus 199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~----- 273 (354)
T 2pbi_B 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR----- 273 (354)
T ss_dssp EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-----
T ss_pred eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----
Confidence 999999987555899999999999999999999988887 78899999999999999999999999999998752
Q ss_pred CCceeeeeec--cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996 257 YGMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 257 ~~~~~~~~~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
.+..+. .+...+.+++|+| +.+|++|+.|+.|++||+.+++.+..+.+|.++|++++|+|+|++|++|+.||.
T Consensus 274 ----~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 274 ----EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp ----EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred ----EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 233333 3345789999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 012996 334 HTSSR 338 (451)
Q Consensus 334 i~iw~ 338 (451)
+++|+
T Consensus 350 v~vW~ 354 (354)
T 2pbi_B 350 LRVWA 354 (354)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 9
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-46 Score=334.64 Aligned_cols=289 Identities=18% Similarity=0.275 Sum_probs=252.3
Q ss_pred eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
..+++.+ |...|.+++ |+|+++++++++.| |.|++||+.++..... ..|..+|.+++|+|++++|++|+.|+.
T Consensus 5 ~~~~~~~---h~~~V~~~~--fsp~~~~l~s~~~d-g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~ 78 (304)
T 2ynn_A 5 IKKTFSN---RSDRVKGID--FHPTEPWVLTTLYS-GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78 (304)
T ss_dssp CEEEEEE---ECSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSE
T ss_pred eEEeecC---CCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCE
Confidence 3445554 456788888 99999999999998 9999999998765543 457889999999999999999999999
Q ss_pred EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||+|++||+++ .......+.+|...|.+++|
T Consensus 79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~----------~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG----------TTEEEEEECCCCSCEEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC----------CcchhhhhcccCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999954 22345678899999999999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (451)
+|.+. ..|++|+.|++|++||++++.....+. +...+..++|+| ++.+|++|+.|+.|++||+++.
T Consensus 149 ~p~~~-~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------- 218 (304)
T 2ynn_A 149 NPKDP-STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (304)
T ss_dssp CTTCT-TEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---------
T ss_pred CCCCC-CEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---------
Confidence 98422 799999999999999998887666554 557789999987 7789999999999999999876
Q ss_pred eeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc--eeeeccCCCCccc
Q 012996 260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL--YLNLGSFSNPHTS 336 (451)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~--~l~~~s~d~~i~i 336 (451)
..+..+.+|...|.+++|+| +.+|++|+.||+|++||+.+++++.++..|...+.+++|+|++. ++++|+.|| +.+
T Consensus 219 ~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~ 297 (304)
T 2ynn_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTV 297 (304)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEE
T ss_pred ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEE
Confidence 66788999999999999999 99999999999999999999999999999999999999999875 466666555 555
Q ss_pred cccC
Q 012996 337 SRRH 340 (451)
Q Consensus 337 w~~~ 340 (451)
|++.
T Consensus 298 ~~~~ 301 (304)
T 2ynn_A 298 LSLG 301 (304)
T ss_dssp EECC
T ss_pred EEec
Confidence 6544
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=341.03 Aligned_cols=309 Identities=16% Similarity=0.184 Sum_probs=250.6
Q ss_pred ceeeeeecCCCCCC-ceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eeecCCCCeeEEEECCCCcEEEEe
Q 012996 24 AEQLRYKSCASPPH-GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKSLPAEPIKPIAANSHGTYIAGG 98 (451)
Q Consensus 24 ~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~ 98 (451)
+.+.++.+ |.. .+.+++ |+|+|++||+++.| ++|+|||+.++... ....|...|.+++|+|++++|++|
T Consensus 6 ~~~~~~~~---h~~~~v~~l~--~sp~g~~las~~~D-~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 6 VLLGRVPA---HPDSRCWFLA--WNPAGTLLASCGGD-RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp EEEEEECC---STTSCEEEEE--ECTTSSCEEEEETT-SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred EEeeeecC---CCCCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence 34555554 444 788888 99999999999998 99999999877532 224588999999999999999999
Q ss_pred ccCCCEEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996 99 GQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (451)
Q Consensus 99 ~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (451)
+.|+.|++|++..+ +++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+. .....+..+.+|..
T Consensus 80 s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 80 SFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE--------DEYECVSVLNSHTQ 151 (345)
T ss_dssp ETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT--------SCEEEEEEECCCCS
T ss_pred ECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC--------CCeEEEEEecCcCC
Confidence 99999999999876 457788999999999999999999999999999999999652 12234567789999
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
.|.+++|+|++ .+|++++.|+.|++||.+++... ..+. |...|.+++|+|++++|++|+.|+.|++|+.......
T Consensus 152 ~v~~~~~~p~~--~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 152 DVKHVVWHPSQ--ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp CEEEEEECSSS--SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CeEEEEECCCC--CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 99999999998 89999999999999999887543 3444 7889999999999999999999999999997543221
Q ss_pred CC------CCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEE
Q 012996 254 TS------SYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNI 316 (451)
Q Consensus 254 ~~------~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l 316 (451)
.. ......+..+.+ |...|++++|+| +..|++++.|+.|++|+...+. ......+|...|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 309 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE
T ss_pred ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe
Confidence 11 111233445555 889999999999 9999999999999999986542 122345789999999
Q ss_pred EEEecC-ceeeeccCCCCccccccCCCCCCCcc
Q 012996 317 LVVRRP-LYLNLGSFSNPHTSSRRHGSQLPPPL 348 (451)
Q Consensus 317 ~~s~~~-~~l~~~s~d~~i~iw~~~~~~~~~~~ 348 (451)
+|+|++ .+||+++.||.|++|+....+.+.++
T Consensus 310 ~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 310 AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 999998 48999999999999999877655443
No 11
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.1e-46 Score=363.73 Aligned_cols=300 Identities=22% Similarity=0.387 Sum_probs=270.8
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
+|++++ .|+.|++||. +++.+..+.+ |...|.+++ |+|+++.+++++.| +.|++||...........|...|
T Consensus 276 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~t~~~d-~~i~~w~~~~~~~~~~~~~~~~v 347 (577)
T 2ymu_A 276 TIASAS-DDKTVKLWNR-NGQLLQTLTG---HSSSVWGVA--FSPDGQTIASASDD-KTVKLWNRNGQHLQTLTGHSSSV 347 (577)
T ss_dssp EEEEEE-TTSCEEEEET-TSCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred EEEEEe-CCCEEEEEeC-CCcEEEEEec---CCCCeEEEE--ECCCCCEEEEEeCC-CeEEEEeCCCCeeEEEeCCCCCE
Confidence 578888 9999999996 4666666654 557788888 99999999999988 99999999887777777788999
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
.+++|+|++++|++|+.||.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||..
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~----------- 415 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN----------- 415 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----------
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-----------
Confidence 99999999999999999999999994 678888999999999999999999999999999999999962
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (451)
...+..+.+|...|++++|+|++ .+|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus 416 -~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i 491 (577)
T 2ymu_A 416 -GQLLQTLTGHSSSVWGVAFSPDD--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491 (577)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred -CCEEEEecCCCCCeEEEEECCCC--CEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence 23566788999999999999988 89999999999999996 455666555 88999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
++||... ..+..+.+|...|++++|+| +++|++++.||.|++||. +++++.++.+|.++|++++|+||
T Consensus 492 ~iw~~~~----------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~d 560 (577)
T 2ymu_A 492 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD 560 (577)
T ss_dssp EEEETTS----------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEcCCC----------CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCC
Confidence 9999643 45778899999999999999 999999999999999995 78999999999999999999999
Q ss_pred CceeeeccCCCCccccc
Q 012996 322 PLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 322 ~~~l~~~s~d~~i~iw~ 338 (451)
|++|++++.|++|++||
T Consensus 561 g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 561 GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEeCCCEEEEeC
Confidence 99999999999999997
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-46 Score=345.46 Aligned_cols=303 Identities=19% Similarity=0.279 Sum_probs=257.1
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSH 91 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~ 91 (451)
..+..|+..+..+..++.+ |...|.+++ |+|++++|++++.| |+|++||..++.... ...|...|.+++|+|+
T Consensus 46 ~~~~~~~~~~~~~~~~l~g---H~~~V~~~~--~sp~~~~l~s~s~D-~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~ 119 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQG---HSGKVYSLD--WTPEKNWIVSASQD-GRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119 (380)
T ss_dssp GGCCCCCCCCCEEEEEECC---CSSCEEEEE--ECTTSSCEEEEETT-SEEEEEETTTTEEEEEEECCCTTCCCCEECTT
T ss_pred ccccccccceeEEeecccc---cccEEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCccceEEecCCCCEEEEEECCC
Confidence 3456788777777777775 557788998 99999999999998 999999998877553 3568889999999999
Q ss_pred CcEEEEeccCCCEEEEEcCCCc-------ceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 92 GTYIAGGGQSGDIYMWEVASGR-------LLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
+++|++|+.|+.+++||+.+.. ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++
T Consensus 120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~--------- 190 (380)
T 3iz6_a 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG--------- 190 (380)
T ss_dssp SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---------
T ss_pred CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---------
Confidence 9999999999999999986532 34567899999999999996 567999999999999999652
Q ss_pred cccceecc-----cCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCCEEEE
Q 012996 164 SHLYLHSF-----TGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 164 ~~~~~~~~-----~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~ 235 (451)
..+..+ .+|...|.++.+++ ++ .++++|+.|+.|++||++. +..+..+. |...|.+++|+|++.+|++
T Consensus 191 --~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 191 --QRISIFGSEFPSGHTADVLSLSINSLNA--NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp --CEEEEECCCSSSSCCSCEEEEEECSSSC--CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred --cEEEEeecccCCCCccCeEEEEeecCCC--CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE
Confidence 222222 67999999999976 44 8999999999999999984 46666665 8899999999999999999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeecc-------CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-------HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF- 306 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~- 306 (451)
|+.||.|++||++++. .+..+.. +...|++++|+| +.+|++|+.||.|++||+.+++.+..+
T Consensus 267 ~s~D~~i~lwd~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp ECSSSCEEEEETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred EcCCCeEEEEECCCCc---------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence 9999999999998863 3333332 234589999999 999999999999999999999988877
Q ss_pred ---ecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 307 ---RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 307 ---~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
.+|.+.|++++|+|+|.+|++|+.||.+++|++.+.+
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6899999999999999999999999999999988653
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2e-44 Score=323.11 Aligned_cols=282 Identities=22% Similarity=0.373 Sum_probs=252.0
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
+|...|.+++ |+|+++++++++.| |.|++|+..++..... ..|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 21 gh~~~v~~~~--~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 21 GHTKAVSSVK--FSPNGEWLASSSAD-KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp CCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ccCCcEEEEE--ECCCCCEEEEeeCC-CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 4667899999 99999999999998 9999999987766543 458889999999999999999999999999999999
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
+.+..+.+|...|.++.|+|++++|++|+.||.|++||+++ ...+..+..|...|.+++|++++ .++
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l 164 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-----------GKCLKTLPAHSDPVSAVHFNRDG--SLI 164 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTS--SEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CEEEEEecCCCCcEEEEEEcCCC--CEE
Confidence 99999999999999999999999999999999999999954 44567788899999999999988 899
Q ss_pred EEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 193 VSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
++++.||.|++||+++++.+..+. +...+..++|+|++++|++++.||.|++||+.+. ..+..+.+|..
T Consensus 165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~ 235 (312)
T 4ery_A 165 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---------KCLKTYTGHKN 235 (312)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEECSSCC
T ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---------cEEEEEEecCC
Confidence 999999999999999998877764 4567999999999999999999999999999876 55667777766
Q ss_pred ceeE--EEEe-c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc--CCCCccccccC
Q 012996 271 AVTC--LAYS-T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS--FSNPHTSSRRH 340 (451)
Q Consensus 271 ~v~~--~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--~d~~i~iw~~~ 340 (451)
.+.+ ..++ + +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 5433 3444 4 88999999999999999999999999999999999999999999999986 69999999864
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=7.6e-45 Score=337.77 Aligned_cols=269 Identities=22% Similarity=0.362 Sum_probs=242.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+|++|+ .||+|+|||+.+++....+.+| ...|.+++ |+|+++++++++.| ++|++||+.+...... ..|..
T Consensus 121 ~~l~s~s-~Dg~i~vwd~~~~~~~~~l~~h---~~~V~~v~--~~~~~~~l~sgs~D-~~i~iwd~~~~~~~~~~~~h~~ 193 (410)
T 1vyh_C 121 SVMVSAS-EDATIKVWDYETGDFERTLKGH---TDSVQDIS--FDHSGKLLASCSAD-MTIKLWDFQGFECIRTMHGHDH 193 (410)
T ss_dssp SEEEEEE-SSSCEEEEETTTCCCCEEECCC---SSCEEEEE--ECTTSSEEEEEETT-SCCCEEETTSSCEEECCCCCSS
T ss_pred CEEEEEe-CCCeEEEEECCCCcEEEEEecc---CCcEEEEE--EcCCCCEEEEEeCC-CeEEEEeCCCCceeEEEcCCCC
Confidence 3689999 9999999999999999888764 46788888 99999999999998 9999999988765443 45788
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.|.+++|+|++++|++|+.|+.|++||+.++.++..+.+|...|.++.|+|++.+|++|+.||.|++||+.+
T Consensus 194 ~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-------- 265 (410)
T 1vyh_C 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-------- 265 (410)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred cccccceecccCCcCceeEEEEeecCC------------------eeEEEEeeCCCcEEEEEcCCCceeeeee-ccccee
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGV------------------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVID 222 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~------------------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~ 222 (451)
......+.+|...|.+++|+|++. +.++++|+.|+.|++||++++.++..+. |...|.
T Consensus 266 ---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 266 ---KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp ---CCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred ---CceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEE
Confidence 445667889999999999998631 3689999999999999999999888887 888999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
+++|+|++.+|++|+.||.|++||+.+. ..+..+.+|...|++++|+| +.+|++|+.||+|++|+++
T Consensus 343 ~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILSCADDKTLRVWDYKNK---------RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEEEETTTEEEEECCTTS---------CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCC---------ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999999999775 45667889999999999999 9999999999999999963
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.1e-44 Score=323.44 Aligned_cols=283 Identities=19% Similarity=0.289 Sum_probs=244.2
Q ss_pred CCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCc------eeeeecCCCCeeEEEECCCCcEEEEeccCCCEE
Q 012996 33 ASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQ------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIY 105 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 105 (451)
.+|...|.+++ |+|++ ++|++++.| ++|++|++.... ......|...|.+++|+|++++|++|+.|+.|+
T Consensus 14 ~gH~~~V~~l~--~~~~~~~~l~s~s~D-~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 14 EGHNGWVTSLA--TSAGQPNLLLSASRD-KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp CCCSSCEEEEE--ECSSCTTEEEEEETT-SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ccccceEEEEE--ccCCCccEEEEecCC-ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 35667888888 99976 788888888 999999986432 123356889999999999999999999999999
Q ss_pred EEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 106 MWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 106 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
+||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. ..+..+.+|...|.++.+.|
T Consensus 91 ~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~------------~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS------------CEEEEECCCSSCEEEEEECC
T ss_pred EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------CeEEEEeccCCcEEEEEEcc
Confidence 999999999999999999999999999999999999999999999842 35667789999999999988
Q ss_pred cC----CeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996 186 GG----VSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMH 260 (451)
Q Consensus 186 ~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 260 (451)
.. .+..+++++.|+.|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||+.+. .
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---------~ 229 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---------K 229 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---------E
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------c
Confidence 54 12589999999999999999988877776 8899999999999999999999999999999886 4
Q ss_pred eeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--------CCCCeeEEEEEecCceeeeccCC
Q 012996 261 IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------AKGPVNNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 261 ~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~s~d 331 (451)
.+..+.. ...|.+++|+| +.+|++++.+ .+++|++..+..+..+.. |...+.+++|+|+|++|++|+.|
T Consensus 230 ~~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 230 AMYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 4555554 46899999999 8888887755 599999998877776643 45679999999999999999999
Q ss_pred CCccccccCC
Q 012996 332 NPHTSSRRHG 341 (451)
Q Consensus 332 ~~i~iw~~~~ 341 (451)
|.|++|++.+
T Consensus 308 g~i~vWd~~t 317 (319)
T 3frx_A 308 NVIRVWQVMT 317 (319)
T ss_dssp SCEEEEEEEE
T ss_pred ceEEEEEEee
Confidence 9999999764
No 16
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=322.45 Aligned_cols=268 Identities=20% Similarity=0.353 Sum_probs=241.3
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~ 82 (451)
+|+||+ .|++|+|||+.+++..... ...+|...|.+++ |++++..+++++.| ++|++||+.+++.... ..+...
T Consensus 50 ~l~tgs-~D~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~--~~~~~~~l~s~s~D-~~i~lWd~~~~~~~~~~~~~~~~ 124 (321)
T 3ow8_A 50 TVVTGS-LDDLVKVWKWRDERLDLQW-SLEGHQLGVVSVD--ISHTLPIAASSSLD-AHIRLWDLENGKQIKSIDAGPVD 124 (321)
T ss_dssp EEEEEE-TTSCEEEEEEETTEEEEEE-EECCCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCTTC
T ss_pred EEEEEc-CCCCEEEEECCCCCeeeee-eeccCCCCEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCCEEEEEeCCCcc
Confidence 689999 9999999999877543321 2335678899999 99999999999998 9999999998876543 446778
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
+.+++|+|++++|++|+.+|.|++|++.+++....+..|...|.+++|+|++++|++|+.||.|++||+++
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--------- 195 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--------- 195 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCc
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
...+..+.+|..+|.+++|+|++ .+|++++.|+.|++||+++++....+. |...|.+++|+|++.+|++++.|+.
T Consensus 196 --~~~~~~~~~h~~~v~~l~~spd~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~ 271 (321)
T 3ow8_A 196 --GKLLHTLEGHAMPIRSLTFSPDS--QLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS 271 (321)
T ss_dssp --TEEEEEECCCSSCCCEEEECTTS--CEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred --CcEEEEEcccCCceeEEEEcCCC--CEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc
Confidence 44667788999999999999988 899999999999999999998888777 7889999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|++||+.+. .++..+.+|...|.+++|+| +.+|++++.||.|++||..
T Consensus 272 v~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 272 VKVWDVGTR---------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTTT---------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEeCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999876 66788889999999999999 9999999999999999963
No 17
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.3e-44 Score=348.63 Aligned_cols=303 Identities=23% Similarity=0.396 Sum_probs=270.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI 83 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v 83 (451)
+|++++ .|+.|++||. +++.+..+.+ |...|.+++ |+|+++.+++++.+ +.|++|+...........|...|
T Consensus 235 ~l~~~~-~d~~i~~w~~-~~~~~~~~~~---~~~~v~~v~--~~~d~~~l~~~~~d-~~i~~w~~~~~~~~~~~~h~~~v 306 (577)
T 2ymu_A 235 TIASAS-DDKTVKLWNR-NGQLLQTLTG---HSSSVNGVA--FRPDGQTIASASDD-KTVKLWNRNGQLLQTLTGHSSSV 306 (577)
T ss_dssp CEEEEE-TTSCEEEECT-TSCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SCEEEEETTSCEEEEECCCSSCE
T ss_pred EEEEEe-CCCEEEEEeC-CCCEEEEEec---CCCCEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCcEEEEEecCCCCe
Confidence 578888 9999999995 5677766665 456788888 99999999999988 99999998766666666788999
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
.+++|+|++++|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++++.||.|++||..
T Consensus 307 ~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~----------- 374 (577)
T 2ymu_A 307 WGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----------- 374 (577)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----------
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-----------
Confidence 999999999999999999999999975 55567788999999999999999999999999999999962
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (451)
...+..+.+|...|.+++|+|++ .+|++++.|+.|++||. +++.+..+. |...|.+++|+|++++|++++.|+.|
T Consensus 375 -~~~~~~~~~~~~~v~~~~~s~dg--~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 375 -GQLLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -CCEEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCEEEEecCCCCCeEEEEECCCC--CEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 23566778899999999999998 89999999999999996 566666665 88899999999999999999999999
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
++||... ..+..+.+|...|++++|+| +.+|++++.|+.|++|| .+++++..+.+|.++|++++|+|+
T Consensus 451 ~~w~~~~----------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 451 KLWNRNG----------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp EEEETTS----------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEECCSSCEEEEEECTT
T ss_pred EEEECCC----------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEeCCCCCEEEEEEcCC
Confidence 9999754 45677889999999999999 99999999999999999 478999999999999999999999
Q ss_pred CceeeeccCCCCccccccCC
Q 012996 322 PLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 322 ~~~l~~~s~d~~i~iw~~~~ 341 (451)
+++|++++.||.|++|+..+
T Consensus 520 g~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp SSCEEEEETTSEEEEECTTS
T ss_pred CCEEEEEECcCEEEEEeCCC
Confidence 99999999999999999754
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-44 Score=338.43 Aligned_cols=310 Identities=14% Similarity=0.182 Sum_probs=269.3
Q ss_pred EEeecCCCCCCeEEEEC----ccCc------eeeeeecCC-------CCCCceEEecceEeeccCcccCCCCCCccEEEE
Q 012996 4 LIASSSVADTGIGCWDL----ESGA------EQLRYKSCA-------SPPHGLACVGQRFLASSQLREQPSASSGSILYW 66 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~----~~~~------~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw 66 (451)
+||+|+ .||.|++||+ .+++ ....+.... .|...|.+++ |+|++++|++++.+ |.|++|
T Consensus 60 ~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d-g~i~i~ 135 (425)
T 1r5m_A 60 ILAYGE-KNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA--WSHDGNSIVTGVEN-GELRLW 135 (425)
T ss_dssp EEEEEE-TBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE--ECTTSSEEEEEETT-SCEEEE
T ss_pred EEEEec-CCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE--EcCCCCEEEEEeCC-CeEEEE
Confidence 789999 9999999999 8888 444443211 1456899999 99999999999998 999999
Q ss_pred ECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC---------------eeEEEEc
Q 012996 67 SWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA---------------VTCLVFS 131 (451)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~~ 131 (451)
+...........|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+... +.++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (425)
T 1r5m_A 136 NKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV 215 (425)
T ss_dssp ETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE
T ss_pred eCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc
Confidence 9555555555668899999999999999999999999999999999999888888776 9999999
Q ss_pred cCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce
Q 012996 132 EDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL 211 (451)
Q Consensus 132 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 211 (451)
|++ .+++++.||.|++||+.+ ......+..|...|.+++|++++ .+|++++.|+.|++||+++++.
T Consensus 216 ~~~-~~~~~~~~g~i~~~d~~~-----------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~ 281 (425)
T 1r5m_A 216 DDD-KFVIPGPKGAIFVYQITE-----------KTPTGKLIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNS 281 (425)
T ss_dssp ETT-EEEEECGGGCEEEEETTC-----------SSCSEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSBSC
T ss_pred CCC-EEEEEcCCCeEEEEEcCC-----------CceeeeeccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCcc
Confidence 975 588899999999999954 34556677899999999999988 7999999999999999999988
Q ss_pred eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 212 LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 212 ~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
+..+. +...+.+++|+|++ ++++++.||.|++||+.+. ..+..+..|...|.+++|+| +.+|++++.|
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---------TLLALSIVDGVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---------EEEEEEECTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---------cEeEecccCCccEEEEEEcCCCCEEEEEECC
Confidence 88886 88899999999999 9999999999999999875 56777888999999999999 9999999999
Q ss_pred CcEEEEeCCCCc--------------------eEEEeecCCC--CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 290 GMVRVWDPITHN--------------------IVRMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 290 g~i~iwd~~~~~--------------------~~~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
|.|++||+.+++ ++..+..|.. +|++++|+|++++|++++.||.+++|++.+
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 999999999888 8999999976 999999999999999999999999999864
No 19
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-45 Score=341.08 Aligned_cols=312 Identities=13% Similarity=0.184 Sum_probs=262.2
Q ss_pred EEeec----------CCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC---
Q 012996 4 LIASS----------SVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK--- 70 (451)
Q Consensus 4 ~l~s~----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~--- 70 (451)
+||+| + .||.|+|||+.++.....+... .+...+.+++ |+|++++|++++.| |.|++|++..
T Consensus 27 ~l~~g~~~g~~~~~~~-~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~--~s~~~~~l~~~~~d-g~v~vw~~~~~~~ 101 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFS-TDSSLELWSLLAADSEKPIASL-QVDSKFNDLD--WSHNNKIIAGALDN-GSLELYSTNEANN 101 (416)
T ss_dssp EEEEBCBSSCCCSSCC-CCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEE--ECSSSSCEEEEESS-SCEEEECCSSTTS
T ss_pred EEEEEecCcccccccC-CCCeEEEEEccCCCCCcEEEEE-ecCCceEEEE--ECCCCCeEEEEccC-CeEEEeecccccc
Confidence 67787 7 8999999999987643222222 3667899999 99999999999988 9999999987
Q ss_pred -C-ceeeeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCc------cee---eeccccCCeeEEEEccC-CcEE
Q 012996 71 -P-QVEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGR------LLK---KWHAHYRAVTCLVFSED-GSFL 137 (451)
Q Consensus 71 -~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l 137 (451)
. .......|...|.+++|+|+ +++|++++.||.|++||+.+++ ... .+..|...|.+++|+|+ +.+|
T Consensus 102 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 181 (416)
T 2pm9_A 102 AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVF 181 (416)
T ss_dssp CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEE
T ss_pred cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEE
Confidence 2 23334558899999999998 8999999999999999998886 333 34679999999999998 7899
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC------cCceeEEEEeecCCeeEEEEeeCCC---cEEEEEcCC
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH------TLRITDIVIGYGGVSATIVSASEDR---TCKVWSLLK 208 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~i~~~~~~~~~~l~s~~~d~---~i~iwd~~~ 208 (451)
++++.||.|++||+++ ...+..+..| ...|.+++|+|++. .++++++.|+ .|++||+++
T Consensus 182 ~~~~~dg~v~iwd~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 182 ASAGSSNFASIWDLKA-----------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNS-TRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEESSSSCEEEEETTT-----------TEEEEEECCCCCSSCCCCCEEEEEECSSCT-TEEEEEECCSSSCCCCEEETTS
T ss_pred EEEcCCCCEEEEECCC-----------CCcceEEeccccccccCCceEEEEECCCCC-CEEEEEECCCCCceEEEEeCCC
Confidence 9999999999999965 2234444444 78999999999863 5899999999 999999998
Q ss_pred C-ceeeeee--cccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CE
Q 012996 209 G-RLLRNIV--FPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DL 282 (451)
Q Consensus 209 ~-~~~~~~~--~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~ 282 (451)
+ .....+. |...|.+++|+| ++.+|++++.||.|++||+.+. ..+..+.+|...|++++|+| + .+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---------EQLSQFPARGNWCFKTKFAPEAPDL 320 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---------CEEEEEECSSSCCCCEEECTTCTTE
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---------ccceeecCCCCceEEEEECCCCCCE
Confidence 6 5666665 788999999999 9999999999999999999886 55778889999999999999 6 89
Q ss_pred EEEEcCCCcEEEEeCCCCceEEEee-----------------------------------cCCCCeeEEEEEecCceeee
Q 012996 283 LISGSEDGMVRVWDPITHNIVRMFR-----------------------------------LAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 283 l~s~~~dg~i~iwd~~~~~~~~~~~-----------------------------------~~~~~v~~l~~s~~~~~l~~ 327 (451)
|++++.||.|++||+.++....... .|..++++++|+|+|++|++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 9999999999999998765433221 16678889999999999999
Q ss_pred ccCCCCccccccCC
Q 012996 328 GSFSNPHTSSRRHG 341 (451)
Q Consensus 328 ~s~d~~i~iw~~~~ 341 (451)
++.|+.|++|++.+
T Consensus 401 ~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 401 TPDGKGVSITNPKI 414 (416)
T ss_dssp CTTSSCBCCBCCCC
T ss_pred eCCCCeEEEEEecc
Confidence 99999999999875
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-44 Score=323.27 Aligned_cols=302 Identities=16% Similarity=0.173 Sum_probs=237.9
Q ss_pred cCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--ee-e-ec-CCCCeeEEEECCCCcEEE
Q 012996 22 SGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EV-K-SL-PAEPIKPIAANSHGTYIA 96 (451)
Q Consensus 22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~-~-~~-~~~~v~~~~~~~~~~~l~ 96 (451)
+.+.+..+.+ |...|.+++ |+|+ +|++++.| ++|++|++..+.. .. . .. |...|.+++|+|++++|+
T Consensus 3 ~~~~~~~~~~---h~~~v~~~~--~s~~--~las~~~D-~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la 74 (330)
T 2hes_X 3 SINLIKSLKL---YKEKIWSFD--FSQG--ILATGSTD-RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA 74 (330)
T ss_dssp CCEEEEEEEC---CSSCEEEEE--EETT--EEEEEESS-SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE
T ss_pred ccccceeecc---CCCceeeec--cCCC--EEEEEcCC-CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE
Confidence 3455666665 557788888 9887 88888888 9999999987532 21 1 23 888999999999999999
Q ss_pred EeccCCCEEEEEcCC-------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996 97 GGGQSGDIYMWEVAS-------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 97 ~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
+|+.|+.|++||+.. .+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.... .....+.
T Consensus 75 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~-------~~~~~~~ 147 (330)
T 2hes_X 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG-------EEYECIS 147 (330)
T ss_dssp EEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTC-------CCCEEEE
T ss_pred EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCC-------CCeEEEE
Confidence 999999999999853 34567788999999999999999999999999999999994310 1224566
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--ceeeeee-cccceeEEEECCC--CCEEEEEeCCCcEEE
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYI 244 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i 244 (451)
.+.+|...|.+++|+|++ .+|++++.|++|++||..++ +++..+. |...|.+++|+|+ +..|++|+.|+.|++
T Consensus 148 ~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~i 225 (330)
T 2hes_X 148 VLQEHSQDVKHVIWHPSE--ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225 (330)
T ss_dssp EECCCSSCEEEEEECSSS--SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEE
T ss_pred EeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEE
Confidence 788999999999999988 89999999999999998776 4566665 8889999999998 678999999999999
Q ss_pred EEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc--eEEE-eecCCC-CeeEEEEE
Q 012996 245 AALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRM-FRLAKG-PVNNILVV 319 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~-~~~~~~-~v~~l~~s 319 (451)
||+....... ...+.....+.+ |...|++++|+++.+|++++.||.|++||..+++ .+.. +..|.. .|.+++|+
T Consensus 226 w~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~ 304 (330)
T 2hes_X 226 WKYMGDDEDD-QQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL 304 (330)
T ss_dssp EEEEEECTTS-CEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC
T ss_pred EEecCCCccc-cceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe
Confidence 9997643111 111123344544 8999999999996699999999999999998774 3333 356776 89999999
Q ss_pred e--cCceeeeccCCCCccccccCC
Q 012996 320 R--RPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 320 ~--~~~~l~~~s~d~~i~iw~~~~ 341 (451)
| ++++|++|+.||.|++|++..
T Consensus 305 ~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 305 ELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp -----CCEEEEETTSEEEEEEC--
T ss_pred cCCCceEEEEecCCCcEEEEEecc
Confidence 9 789999999999999999764
No 21
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.9e-44 Score=331.31 Aligned_cols=311 Identities=18% Similarity=0.242 Sum_probs=253.0
Q ss_pred CCeEEEECccCceee-eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-C-----------
Q 012996 13 TGIGCWDLESGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P----------- 79 (451)
Q Consensus 13 g~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~----------- 79 (451)
....+|+........ .+.....|...|.+++ |+|+|+++|+++ + +.+++|++.++....... +
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~--fspdg~~la~g~-~-~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 40 DYYILYNPALPREIDVELHKSLDHTSVVCCVK--FSNDGEYLATGC-N-KTTQVYRVSDGSLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp SCEEEECTTSCCCEEEEEEEEEECSSCCCEEE--ECTTSSEEEEEC-B-SCEEEEETTTCCEEEEECC------------
T ss_pred ceEEEECCCCCcccCceeEEecCCCCEEEEEE--ECCCCCEEEEEc-C-CcEEEEEecCCCEEEEecCcccccccccccc
Confidence 345577755443221 1111113667788888 999999999876 4 899999998877654322 1
Q ss_pred -------CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 80 -------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 80 -------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 1248999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeee--------ecccceeE
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI--------VFPSVIDA 223 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--------~~~~~i~~ 223 (451)
++ .....+. +...+.+++++| ++ .++++++.|+.|++||++++..+..+ .|...|.+
T Consensus 196 ~~-----------~~~~~~~-~~~~v~~~~~~~~~~--~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 196 TG-----------QCSLTLS-IEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp TT-----------EEEEEEE-CSSCEEEEEECSTTC--CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred CC-----------eeEEEEE-cCCCcEEEEEECCCC--CEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence 52 2233333 566799999998 56 89999999999999999998877665 26778999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEEccCCCCCCC---CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 224 IALDPAEHVFYAGSRDGSIYIAALNAESPSTS---SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
++|+|++.+|++|+.||.|++||++....... .........+.+|...|.+++|+| +.+|++|+.||.|++||+.+
T Consensus 262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999999999999999986432111 111234557789999999999999 99999999999999999999
Q ss_pred CceEEEeecCCCCeeEEEEEe------cCceeeeccCCCCccccccCC
Q 012996 300 HNIVRMFRLAKGPVNNILVVR------RPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 300 ~~~~~~~~~~~~~v~~l~~s~------~~~~l~~~s~d~~i~iw~~~~ 341 (451)
++++..+.+|.+.|.+++|++ ++.+|++|+.||.|++|+...
T Consensus 342 ~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 342 GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 999999999999999999986 688999999999999999764
No 22
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.2e-43 Score=321.53 Aligned_cols=264 Identities=17% Similarity=0.293 Sum_probs=237.0
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-----eeee
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKS 77 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-----~~~~ 77 (451)
.+|++|+ .||+|+|||+.+++.+..+..+ ...+.+++ |+|+++++++++.| +.|++|++.+... ....
T Consensus 68 ~~l~s~s-~Dg~v~iWd~~~~~~~~~~~~~---~~~v~~~~--~s~~~~~l~s~~~d-~~v~iw~~~~~~~~~~~~~~~~ 140 (340)
T 1got_B 68 RLLLSAS-QDGKLIIWDSYTTNKVHAIPLR---SSWVMTCA--YAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELA 140 (340)
T ss_dssp SEEEEEE-TTTEEEEEETTTCCEEEEEECS---SSCEEEEE--ECTTSSEEEEEETT-CEEEEEETTTCSBSCEEEEEEE
T ss_pred CEEEEEe-CCCcEEEEECCCCCcceEeecC---CccEEEEE--ECCCCCEEEEEeCC-CeEEEEECccCCCcceeEEEec
Confidence 3689999 9999999999999998888754 46688888 99999999999998 9999999986532 2234
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
.|...|.++.|++++. +++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++
T Consensus 141 ~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~---- 215 (340)
T 1got_B 141 GHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE---- 215 (340)
T ss_dssp CCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred CCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC----
Confidence 5889999999998875 88889999999999999999999999999999999999999999999999999999954
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEEEECCCCCEEE
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFY 234 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~ 234 (451)
......+.+|...|.+++|+|++ .+|++++.||+|++||+++++.+..+.+. ..|.+++|+|++.+|+
T Consensus 216 -------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 216 -------GMCRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp -------CSEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred -------CeeEEEEcCCcCCEEEEEEcCCC--CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 44567788999999999999988 89999999999999999999888777644 4799999999999999
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
+|+.||.|++||+... ..+..+.+|...|++++|+| +.+|++|+.||.|+|||
T Consensus 287 ~g~~d~~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCeEEEEEcccC---------cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999875 45678889999999999999 99999999999999997
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.4e-44 Score=323.47 Aligned_cols=291 Identities=11% Similarity=0.155 Sum_probs=237.8
Q ss_pred eeeeeecCCCCCCceEEecceE-----ee-ccCcccCCCCCCccEEEEECCCCc--------eeeeecCCCCeeEEEECC
Q 012996 25 EQLRYKSCASPPHGLACVGQRF-----LA-SSQLREQPSASSGSILYWSWSKPQ--------VEVKSLPAEPIKPIAANS 90 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~-----~~-~~~~l~~~~~d~g~i~vw~~~~~~--------~~~~~~~~~~v~~~~~~~ 90 (451)
....+.+ |...|.+++ | ++ ++++|++++.| ++|++||+.... ......|...|.+++|+|
T Consensus 13 ~~~~l~g---H~~~V~~~~--~~~s~~~~~d~~~l~sgs~D-~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 13 KRGILEG---HSDWVTSIV--AGFSQKENEDSPVLISGSRD-KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EEEEEEC---CSSCEEEEE--ECCCSSTTCCCCEEEEEETT-SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS
T ss_pred eeeeecc---chhhhhhee--eEEEeecCCCCCEEEEEcCC-CEEEEEECCcCCcccccccccchhccCCCceEEEEECC
Confidence 3445554 557788888 7 66 89999999998 999999987542 123346889999999999
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... .......
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~---------~~~~~~~ 157 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE---------CKFSSAE 157 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC---------EEEECCT
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC---------ceeeeec
Confidence 9999999999999999999999999999999999999999999999999999999999998531 1111222
Q ss_pred ccCCcCceeEEEEeecCC--------eeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCc
Q 012996 171 FTGHTLRITDIVIGYGGV--------SATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~--------~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
...|...|.+++|+|.+. +.++++++.|+.|++||. .......+. |...|.+++|+|++++|++|+.||.
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 347899999999998752 258999999999999994 455555554 8889999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE--Eee-----------
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MFR----------- 307 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~~----------- 307 (451)
|++||+.... .....+ .+...|.+++|+| +.+++ ++.|+.|++||+.+++... .+.
T Consensus 237 v~iwd~~~~~--------~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 237 LLIWDILNLT--------YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEEEESSCCS--------SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEEEECCCCc--------ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 9999995432 112222 3456799999999 76665 5568889999998876544 443
Q ss_pred cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 308 LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+|...|.+++|+|+|++|++|+.||.|++|++..
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 6778899999999999999999999999999764
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=321.42 Aligned_cols=288 Identities=18% Similarity=0.275 Sum_probs=232.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPA 80 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~~ 80 (451)
+||+|+ .|++|+|||+.++..........+|...|.+++ |+|++++|++++.| ++|++|+...... .....|.
T Consensus 30 ~las~~-~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~l~s~s~D-~~v~iw~~~~~~~~~~~~~~~h~ 105 (345)
T 3fm0_A 30 LLASCG-GDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA--WSPCGNYLASASFD-ATTCIWKKNQDDFECVTTLEGHE 105 (345)
T ss_dssp CEEEEE-TTSCEEEEEEETTEEEEEEEECSSCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEECCC-EEEEEEECCCS
T ss_pred EEEEEc-CCCeEEEEEcCCCcceeeeeeccccCCcEEEEE--ECCCCCEEEEEECC-CcEEEEEccCCCeEEEEEccCCC
Confidence 689999 999999999988875544333446778899999 99999999999998 9999999887653 2334688
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
..|.+++|+|++++|++|+.|+.|++||+.++. ++..+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~---- 181 (345)
T 3fm0_A 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE---- 181 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET----
T ss_pred CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC----
Confidence 999999999999999999999999999998764 4567789999999999999999999999999999999854
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---------------ceeeeee--cccc
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------------RLLRNIV--FPSV 220 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------------~~~~~~~--~~~~ 220 (451)
........+.+|...|.+++|+|++ .+|++++.|++|++||.... +++..+. |...
T Consensus 182 -----~~~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 182 -----DDWVCCATLEGHESTVWSLAFDPSG--QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp -----TEEEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred -----CCEEEEEEecCCCCceEEEEECCCC--CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 2233456788999999999999998 89999999999999996432 1222222 6678
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEeCC
Q 012996 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd~~ 298 (451)
|.+++|+|++..|++++.|+.|++|+....................+|...|++++|+| + .+|++|+.||+|++|++.
T Consensus 255 v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 99999999999999999999999999876532211111112233468999999999999 5 599999999999999999
Q ss_pred CCceEEEe
Q 012996 299 THNIVRMF 306 (451)
Q Consensus 299 ~~~~~~~~ 306 (451)
+++.+...
T Consensus 335 ~~~~~~~~ 342 (345)
T 3fm0_A 335 RPEGLHHH 342 (345)
T ss_dssp C-------
T ss_pred CCCCcccc
Confidence 88776554
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.6e-43 Score=317.67 Aligned_cols=304 Identities=18% Similarity=0.252 Sum_probs=261.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee----eee--
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE----VKS-- 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~----~~~-- 77 (451)
+++++. .++.+.+|+........... .|...|.+++ |+|+++++++++ + |.|++|++.++... ...
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~--~~~~~~~l~~~~-d-g~i~iw~~~~~~~~~~~~~~~~~ 94 (337)
T 1gxr_A 23 MQPVPF-PPDALIGPGIPRHARQINTL---NHGEVVCAVT--ISNPTRHVYTGG-K-GCVKVWDISHPGNKSPVSQLDCL 94 (337)
T ss_dssp EEECCC-CTTSSSSTTCCSEEEEEEEE---CCSSCCCEEE--ECSSSSEEEEEC-B-SEEEEEETTSTTCCSCSEEEECS
T ss_pred EEEeec-CCCcEeccccCCccccceec---cCCCceEEEE--EecCCcEEEEcC-C-CeEEEEECCCCCceeeeeccccc
Confidence 344555 45555555544433333333 3667788888 999999999998 6 99999999865422 111
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
.|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-- 172 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-- 172 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--
Confidence 578899999999999999999999999999999887 5667788999999999999999999999999999999954
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (451)
......+..|...|.+++|++++ .++++++.||.|++||+++++.+..+.+...+.+++|+|+++++++
T Consensus 173 ---------~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 241 (337)
T 1gxr_A 173 ---------QTLVRQFQGHTDGASCIDISNDG--TKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241 (337)
T ss_dssp ---------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ---------CceeeeeecccCceEEEEECCCC--CEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE
Confidence 44566778899999999999988 8999999999999999999999999889999999999999999999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (451)
++.++.|++||+.... ...+..|...|.+++|+| +.+|++++.||.|++||+.+++.+... .|..+|.
T Consensus 242 ~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~ 310 (337)
T 1gxr_A 242 GMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVL 310 (337)
T ss_dssp EETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEE
T ss_pred EcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEE
Confidence 9999999999998753 346778999999999999 999999999999999999999888554 5788999
Q ss_pred EEEEEecCceeeeccCCCCcccccc
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
+++|+|++++|++++.||.+++|++
T Consensus 311 ~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 311 SCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEECCCCCEEEEecCCCeEEEEEE
Confidence 9999999999999999999999985
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.6e-44 Score=332.69 Aligned_cols=309 Identities=14% Similarity=0.126 Sum_probs=258.5
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEP 82 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~ 82 (451)
+|++++ .||.|++||+.+++....+..+ ..+.... |+++++++++++.+ |.|++||+.++..... ..|...
T Consensus 70 ~l~~~~-~d~~v~i~d~~~~~~~~~~~~~----~~~~~~~--~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~h~~~ 141 (420)
T 3vl1_A 70 HLYKAR-LDGHDFLFNTIIRDGSKMLKRA----DYTAVDT--AKLQMRRFILGTTE-GDIKVLDSNFNLQREIDQAHVSE 141 (420)
T ss_dssp TEEEEE-ETTEEEEEECCSEETTTTSCSC----CEEEEEE--ECSSSCEEEEEETT-SCEEEECTTSCEEEEETTSSSSC
T ss_pred eEEEEE-cCCcEEEEEecccceeeEEecC----CceEEEE--EecCCCEEEEEECC-CCEEEEeCCCcceeeecccccCc
Confidence 478888 8999999999988776555432 3344445 89999999999988 9999999998877655 468999
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||++++
T Consensus 142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------- 213 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-------- 213 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------
T ss_pred cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999653
Q ss_pred ccccceeccc---CCcCceeEEE---------------------EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--
Q 012996 163 ASHLYLHSFT---GHTLRITDIV---------------------IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-- 216 (451)
Q Consensus 163 ~~~~~~~~~~---~~~~~i~~i~---------------------~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-- 216 (451)
..+..+. .|...+.+++ |++++ .++++++.||.|++||+++++.+..+.
T Consensus 214 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 214 ---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG--KYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp ---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT--EEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred ---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC--CEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 2222332 2444444444 45666 899999999999999999998877775
Q ss_pred cccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEecCCEEEEEcCCCcEEE
Q 012996 217 FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDGMVRV 294 (451)
Q Consensus 217 ~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg~i~i 294 (451)
+...+.+++|+|++. +|++|+.||.|++||+++.. .++..+.. |...|+++.+.++.+|++++.||.|++
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--------CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKL 360 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEE
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--------CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEE
Confidence 678899999999998 99999999999999998864 33445555 677888887766889999999999999
Q ss_pred EeCCCC---------ceEEEeecCCCCeeEEEEEecCc---eeeeccCCCCccccccCC
Q 012996 295 WDPITH---------NIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 295 wd~~~~---------~~~~~~~~~~~~v~~l~~s~~~~---~l~~~s~d~~i~iw~~~~ 341 (451)
||+... .....+..|.+.|.+++|+|++. .|++++.+|.+.+|++..
T Consensus 361 w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 361 DIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 998763 22334567888999999999999 788888899999999764
No 27
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.7e-43 Score=317.56 Aligned_cols=295 Identities=17% Similarity=0.294 Sum_probs=253.7
Q ss_pred cCceeeeeecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcE
Q 012996 22 SGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTY 94 (451)
Q Consensus 22 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~ 94 (451)
+.....+++ +|...|.+++ |+|+ +++|++++.| |+|+|||+.+.+. .....|...|.+++|+|++++
T Consensus 27 ~~~l~~tL~---GH~~~V~~v~--~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~ 100 (340)
T 4aow_A 27 QMTLRGTLK---GHNGWVTQIA--TTPQFPDMILSASRD-KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF 100 (340)
T ss_dssp EEEEEEEEC---CCSSCEEEEE--ECTTCTTEEEEEETT-SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ceEEEEEEC---CccCCEEEEE--EeCCCCCEEEEEcCC-CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE
Confidence 334445565 4667899999 9998 5788899888 9999999876542 123457899999999999999
Q ss_pred EEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 95 IAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 95 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+.. .........+|
T Consensus 101 l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~----------~~~~~~~~~~~ 170 (340)
T 4aow_A 101 ALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG----------VCKYTVQDESH 170 (340)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----------CEEEEECSSSC
T ss_pred EEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC----------CceEEEEeccc
Confidence 99999999999999999988888888999999999999999999999999999999854 23344566789
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
...+..++|++++...++++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++|+.||.|++||++..
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~--- 247 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG--- 247 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---
Confidence 999999999988776789999999999999999999888876 8889999999999999999999999999999876
Q ss_pred CCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee---------cCCCCeeEEEEEecCce
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR---------LAKGPVNNILVVRRPLY 324 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~l~~s~~~~~ 324 (451)
..+..+. +...|.++.|+|+..+++++.|+.|++||+.++..+..+. .|...|++++|+|++++
T Consensus 248 ------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 320 (340)
T 4aow_A 248 ------KHLYTLD-GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320 (340)
T ss_dssp ------EEEEEEE-CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred ------ceeeeec-CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence 4455554 4468999999996667778889999999999888776654 57889999999999999
Q ss_pred eeeccCCCCccccccCCC
Q 012996 325 LNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 325 l~~~s~d~~i~iw~~~~~ 342 (451)
|++|+.||.|++|++.++
T Consensus 321 l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 321 LFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEETTSCEEEEEEEC-
T ss_pred EEEEeCCCEEEEEeCCCc
Confidence 999999999999998765
No 28
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.3e-43 Score=312.20 Aligned_cols=251 Identities=17% Similarity=0.227 Sum_probs=224.4
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
...|.+.|.+++|+|++++|++|+.||.|++||+.++..+..+..|..+|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~-- 86 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-- 86 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999954
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeeee-cccceeEEEECC-CCCE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNIV-FPSVIDAIALDP-AEHV 232 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~i~~~~~~~-~~~~ 232 (451)
...+..+.+|...|.+++|+|++ .+|++|+.|++|++||++++.. ...+. |...|.+++|+| ++..
T Consensus 87 ---------~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 87 ---------GEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp ---------CCEEEEEECCSSCEEEEEECSSS--SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred ---------CcEEEEEeCCCCcEEEEEEcCCC--CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence 45677788999999999999998 8999999999999999988744 34444 788999999999 6789
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
|++|+.|+.|++||++... .......+|...+..+.|+| +.+|++|+.||+|++||+.+++++.++.+|
T Consensus 156 l~sgs~D~~v~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQST--------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp EEEEETTSEEEEEETTCSS--------CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEeCCCeEEEEECCCCC--------ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 9999999999999997754 22233446778899999987 569999999999999999999999999999
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
...|.+++|+|++++|++++.||.|++|+..+.++...
T Consensus 228 ~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 228 MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 99999999999999999999999999999887655433
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.2e-42 Score=312.89 Aligned_cols=264 Identities=20% Similarity=0.302 Sum_probs=235.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-------eeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVK 76 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-------~~~~ 76 (451)
+||||+ .||+|+|||..+++....+..+. ..+.+++ |+|+|.++++++.| +.+++|++.... ....
T Consensus 78 ~l~s~s-~Dg~v~vWd~~~~~~~~~~~~~~---~~v~~~~--~sp~g~~lasg~~d-~~i~v~~~~~~~~~~~~~~~~~~ 150 (354)
T 2pbi_B 78 RIVSSS-QDGKVIVWDSFTTNKEHAVTMPC---TWVMACA--YAPSGCAIACGGLD-NKCSVYPLTFDKNENMAAKKKSV 150 (354)
T ss_dssp EEEEEE-TTSEEEEEETTTCCEEEEEECSS---SCCCEEE--ECTTSSEEEEESTT-SEEEEEECCCCTTCCSGGGCEEE
T ss_pred EEEEEe-CCCeEEEEECCCCCcceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CCEEEEEEeccccccccccceee
Confidence 689999 99999999999999888877644 5577777 99999999999998 999999986431 2233
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcch
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
..|...|.+++|+|++..|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+++
T Consensus 151 ~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~- 229 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS- 229 (354)
T ss_dssp EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-
T ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-
Confidence 45889999999999999999999999999999999999999999999999999987 568999999999999999954
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEH 231 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~ 231 (451)
...+..+.+|...|.+++|+|++ .+|++++.|++|++||++.++.+..+.. ...+.+++|+|++.
T Consensus 230 ----------~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 230 ----------GQCVQAFETHESDVNSVRYYPSG--DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp ----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ----------CcEEEEecCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 44667788999999999999988 8999999999999999999887766653 34688999999999
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
+|++|+.|+.|++||+.++ ..+..+.+|...|++++|+| +.+|++|+.||+|++|+
T Consensus 298 ~l~~g~~d~~i~vwd~~~~---------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKG---------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEETTSCEEEEETTTC---------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEEECCCcEEEEECCCC---------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999876 44667889999999999999 99999999999999996
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-42 Score=314.52 Aligned_cols=270 Identities=17% Similarity=0.182 Sum_probs=214.1
Q ss_pred EEeecCCCCCCeEEEECccCceeee--------eecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLR--------YKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV 75 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~ 75 (451)
+|++++ |+++++||......... ......+...|.+++ |+|++ .+++++.| |+|+|||+.+++...
T Consensus 44 ~l~~~s--d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~s~d~-~l~~~s~d-g~v~lWd~~~~~~~~ 117 (344)
T 4gqb_B 44 LLLGAS--SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLT--WVGER-GILVASDS-GAVELWELDENETLI 117 (344)
T ss_dssp EEEEEE--CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEE--EETTT-EEEEEETT-SEEEEEEECTTSSCE
T ss_pred EEEEEe--CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEE--EeCCC-eEEEEECC-CEEEEEeccCCCcee
Confidence 455555 77888887431110000 000011335688888 99986 56677777 999999998776432
Q ss_pred -----eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEe
Q 012996 76 -----KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIW 149 (451)
Q Consensus 76 -----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vw 149 (451)
...|.+.|++++|+|+|++|++|+.||.|++||+.+++++..+.+|.+.|.+++|+|++ .+|++++.||.|++|
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iw 197 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccc
Confidence 23588999999999999999999999999999999999999999999999999999987 578999999999999
Q ss_pred eCcchhhhhhhhcccccceec--ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEE
Q 012996 150 SLLTVFEECESQRASHLYLHS--FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIAL 226 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~ 226 (451)
|+++. ..... ...|...+.+++|++++. .++++|+.||.|++||+++++++..+. |...|.+++|
T Consensus 198 d~~~~-----------~~~~~~~~~~~~~~~~~~~~~p~~~-~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 198 DTRCP-----------KPASQIGCSAPGYLPTSLAWHPQQS-EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp ETTSS-----------SCEEECC----CCCEEEEEECSSCT-TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred ccccc-----------ceeeeeecceeeccceeeeecCCCC-cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 99652 22232 345666789999998653 789999999999999999999998887 8899999999
Q ss_pred CCCC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCc
Q 012996 227 DPAE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 227 ~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~ 301 (451)
+|++ .+|++|+.|+.|++||+.++. +..+.+|...|++++|+| +. +|++|+.||+|++|++.+..
T Consensus 266 sp~g~~~lasgs~D~~i~vwd~~~~~----------~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 266 SPHSVPFLASLSEDCSLAVLDSSLSE----------LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTCCE----------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred ccCCCeEEEEEeCCCeEEEEECCCCc----------EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 9987 579999999999999998752 446789999999999999 54 67799999999999998653
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-42 Score=313.26 Aligned_cols=294 Identities=15% Similarity=0.200 Sum_probs=257.9
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
+|...|.+++ |+|+++++++++.| |.|++||+.+++..... .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 30 ~h~~~v~~~~--~s~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 30 GHERPLTQVK--YNKEGDLLFSCSKD-SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp CCSSCEEEEE--ECTTSCEEEEEESS-SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EeeceEEEEE--EcCCCCEEEEEeCC-CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 4668899999 99999999999988 99999999887766544 48899999999999999999999999999999999
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCC-----CcEEEeeCcchhhhhhhhcccccceecccCCcC--ceeEEEEee
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTL--RITDIVIGY 185 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~i~~~~ 185 (451)
+.+..+. |...|.+++|+|++++|++++.+ |.|.+||+...................+..|.. .+.+++|++
T Consensus 107 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 107 QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 9988887 88999999999999999999999 999999997643322222222334455566666 999999999
Q ss_pred cCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee
Q 012996 186 GGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG 263 (451)
Q Consensus 186 ~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (451)
++ .++++++.||.|++||+++ ++.+..+. +...|.+++|+|++.+|++++.||.|++||+.+.. .+.
T Consensus 186 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~ 254 (369)
T 3zwl_B 186 KG--KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ---------VLK 254 (369)
T ss_dssp GG--CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEE
T ss_pred CC--CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCc---------eee
Confidence 88 8999999999999999998 67777776 78899999999999999999999999999998863 344
Q ss_pred eeccCCcceeEEEEec-CCEEEEEcCCC--------------cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996 264 SLSDHSKAVTCLAYST-GDLLISGSEDG--------------MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 264 ~~~~~~~~v~~~~~~~-~~~l~s~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (451)
.+. +...+.+++|+| +.++++++.++ .+++||..+++.+..+..|.+.|++++|+|++++|+++
T Consensus 255 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 255 KYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp EEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 444 788999999999 99999999988 89999999999999999999999999999999999999
Q ss_pred cCCCCccccccCCCC
Q 012996 329 SFSNPHTSSRRHGSQ 343 (451)
Q Consensus 329 s~d~~i~iw~~~~~~ 343 (451)
+.||.|++|++....
T Consensus 334 ~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 334 GEDGFIRLHHFEKSY 348 (369)
T ss_dssp ETTSEEEEEEECHHH
T ss_pred cCCCeEEEEECcccc
Confidence 999999999987543
No 32
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3.1e-42 Score=317.12 Aligned_cols=270 Identities=20% Similarity=0.339 Sum_probs=233.4
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--------eee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--------VEV 75 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--------~~~ 75 (451)
+|++|+ .||+|+|||+.+++....+..|. ..|.+++ |+|+|+++++++.| +.+++|++.... ...
T Consensus 80 ~l~s~s-~D~~v~iWd~~~~~~~~~~~~h~---~~v~~~~--~s~~g~~las~~~d-~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 80 WIVSAS-QDGRLIVWNALTSQKTHAIKLHC---PWVMECA--FAPNGQSVACGGLD-SACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp CEEEEE-TTSEEEEEETTTTEEEEEEECCC---TTCCCCE--ECTTSSEEEECCSS-SCCEEEECCCCSSCCCSSTTCCB
T ss_pred EEEEEe-CCCeEEEEECCCCccceEEecCC---CCEEEEE--ECCCCCEEEEeeCC-CcEEEEECCCCccccCCccceee
Confidence 589999 99999999999999998888765 4566666 99999999999998 999999987532 123
Q ss_pred eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeee-----ccccCCeeEEEEcc-CCcEEEEeeCCCcEEE
Q 012996 76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKW-----HAHYRAVTCLVFSE-DGSFLISGSEDGCVRI 148 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v 148 (451)
...|.+.|.++.|+|+ +..|++|+.|+.|++||+.+++.+..+ .+|...|.++.|++ ++.+|++|+.||.|++
T Consensus 153 ~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~ 232 (380)
T 3iz6_a 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232 (380)
T ss_dssp CCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEE
T ss_pred ccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEE
Confidence 3457889999999996 457999999999999999999988776 67999999999987 8899999999999999
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------cc
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------SV 220 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------~~ 220 (451)
||++. ....+..+.+|...|.+++|+|++ .+|++++.||+|++||+++++.+..+... ..
T Consensus 233 wd~~~----------~~~~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
T 3iz6_a 233 WDLRI----------TSRAVRTYHGHEGDINSVKFFPDG--QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300 (380)
T ss_dssp EETTT----------TCCCCEEECCCSSCCCEEEECTTS--SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCS
T ss_pred EECCC----------CCcceEEECCcCCCeEEEEEecCC--CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCc
Confidence 99953 234567788999999999999998 89999999999999999999888776521 24
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee----ccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
+.+++|+|++++|++|+.||.|++||+.... .+..+ .+|...|++++|+| +.+|++|+.||+|++|
T Consensus 301 v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~---------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAE---------MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371 (380)
T ss_dssp CSEEEECSSSSEEEEECTTSCEEEEETTTCC---------EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred eEEEEECCCCCEEEEEECCCCEEEEECCCCc---------eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence 8999999999999999999999999997753 22233 67999999999999 9999999999999999
Q ss_pred eCCCCc
Q 012996 296 DPITHN 301 (451)
Q Consensus 296 d~~~~~ 301 (451)
++...+
T Consensus 372 ~~~~~~ 377 (380)
T 3iz6_a 372 AFSGHR 377 (380)
T ss_dssp ECCSSS
T ss_pred ecCCCc
Confidence 987654
No 33
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.1e-41 Score=315.19 Aligned_cols=300 Identities=22% Similarity=0.398 Sum_probs=263.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+|++|+ .||+|++||+.+++.+..+.+ |...|.++. |+ +..+++++.| |.|++||+.+++.... ..|..
T Consensus 130 ~~l~sg~-~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~--~~--~~~l~s~~~d-g~i~vwd~~~~~~~~~~~~h~~ 200 (445)
T 2ovr_B 130 NRIVSGS-DDNTLKVWSAVTGKCLRTLVG---HTGGVWSSQ--MR--DNIIISGSTD-RTLKVWNAETGECIHTLYGHTS 200 (445)
T ss_dssp TEEEEEE-TTSCEEEEETTTCCEEEECCC---CSSCEEEEE--EE--TTEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEE-CCCcEEEEECCCCcEEEEEcC---CCCCEEEEE--ec--CCEEEEEeCC-CeEEEEECCcCcEEEEECCCCC
Confidence 3688999 999999999999999988875 456788877 75 6788999888 9999999998876544 45788
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.|.+++|+ ++.+++|+.||.|++||+.+++.+..+.+|...|.++.| ++.++++|+.||.|++||+++
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-------- 268 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-------- 268 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG--------
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC--------
Confidence 99999995 678999999999999999999999999999999999999 688999999999999999954
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
...+..+.+|...|.++.+ ++ .++++++.||.|++||+++++.+..+. +...+.++.+ +++++++|+.||
T Consensus 269 ---~~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 269 ---ETCLHTLQGHTNRVYSLQF--DG--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp ---TEEEEEECCCSSCEEEEEE--CS--SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTS
T ss_pred ---CcEeEEecCCCCceEEEEE--CC--CEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCC
Confidence 4466778899999999998 44 799999999999999999999888876 6677877776 567999999999
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeecc---CCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEe-----ecCCCC
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSD---HSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMF-----RLAKGP 312 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~ 312 (451)
.|++||++++ ..+..+.+ |...|++++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.
T Consensus 340 ~i~vwd~~~~---------~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 409 (445)
T 2ovr_B 340 TVKIWDIKTG---------QCLQTLQGPNKHQSAVTCLQFN-KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409 (445)
T ss_dssp CEEEEETTTC---------CEEEEECSTTSCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCE
T ss_pred eEEEEECCCC---------cEEEEEccCCCCCCCEEEEEEC-CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCce
Confidence 9999999876 34555554 88999999997 689999999999999999999999988 477889
Q ss_pred eeEEEEEecCceeeeccCCCC----ccccccCCC
Q 012996 313 VNNILVVRRPLYLNLGSFSNP----HTSSRRHGS 342 (451)
Q Consensus 313 v~~l~~s~~~~~l~~~s~d~~----i~iw~~~~~ 342 (451)
|++++|+|++.+|++++.||. +.+||+...
T Consensus 410 v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 410 VWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999999999998 999998753
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=306.29 Aligned_cols=274 Identities=16% Similarity=0.255 Sum_probs=217.5
Q ss_pred EEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC-------c-e
Q 012996 4 LIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP-------Q-V 73 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-------~-~ 73 (451)
+||+|+ .|++|++||+.++. ....+. ...|...|.+++ |+|++++|++++.| ++|++|+.... . .
T Consensus 26 ~las~~-~D~~i~lw~~~~~~~~~~~~~~-~~~h~~~v~~v~--~sp~~~~las~s~D-~~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 26 ILATGS-TDRKIKLVSVKYDDFTLIDVLD-ETAHKKAIRSVA--WRPHTSLLAAGSFD-STVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEEEEE-SSSCEEEEECSSSCCEEEEEEC-TTCCCSCEEEEE--ECTTSSEEEEEETT-SCEEEEEC-------CCCEEE
T ss_pred EEEEEc-CCCEEEEEEecCCCeEEEEEEe-cCCccCCEEEEE--ECCCCCEEEEEeCC-CcEEEEEcccCcCccccceeE
Confidence 689999 99999999998753 333331 223778899999 99999999999998 99999998532 1 1
Q ss_pred eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
.....|...|.+++|+|++++|++|+.|+.|++||+... +++..+.+|...|.+++|+|++.+|++|+.|+.|++|
T Consensus 101 ~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW 180 (330)
T 2hes_X 101 AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180 (330)
T ss_dssp EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 223458899999999999999999999999999999432 4567788999999999999999999999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC--------ceeeeee--ccc
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG--------RLLRNIV--FPS 219 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~--------~~~~~~~--~~~ 219 (451)
|+.+ ....++..+.+|...|.+++|++++.+..|++++.|++|++||+..+ .....+. |..
T Consensus 181 ~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 181 KDYD---------DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp EEET---------TEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred ECCC---------CCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9854 12345677889999999999999854478999999999999998754 2333333 678
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee-eeeccCCc-ceeEEEEec---CCEEEEEcCCCcEEE
Q 012996 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII-GSLSDHSK-AVTCLAYST---GDLLISGSEDGMVRV 294 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~---~~~l~s~~~dg~i~i 294 (451)
.|.+++|++++ +|++++.||.|++||...+. +... ....+|.. .|++++|+| +.+|++|+.||+|++
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~-------~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~ 323 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDGE-------WKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETTE-------EEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEE
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc-------eEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEE
Confidence 89999999765 89999999999999987642 1222 23457877 899999998 578999999999999
Q ss_pred EeCCC
Q 012996 295 WDPIT 299 (451)
Q Consensus 295 wd~~~ 299 (451)
||+..
T Consensus 324 W~~~~ 328 (330)
T 2hes_X 324 WSLEK 328 (330)
T ss_dssp EEC--
T ss_pred EEecc
Confidence 99864
No 35
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.6e-41 Score=314.80 Aligned_cols=295 Identities=18% Similarity=0.199 Sum_probs=250.9
Q ss_pred cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc-------eeeeecCCCCeeEEEECCC----C---cEEE
Q 012996 31 SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-------VEVKSLPAEPIKPIAANSH----G---TYIA 96 (451)
Q Consensus 31 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-------~~~~~~~~~~v~~~~~~~~----~---~~l~ 96 (451)
...+|...|.+++ |+| +++++++.| |.|++|++.+.. ......|...|.+++|+|+ + ++|+
T Consensus 11 ~~~~h~~~i~~~~--~~~--~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 11 AGKAHDADIFSVS--ACN--SFTVSCSGD-GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp ESSCSSSCEEEEE--ECS--SEEEEEETT-SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhcCeEEEE--ecC--CeEEEEcCC-CEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3446778899999 988 789999888 999999999876 4455668899999999999 9 9999
Q ss_pred EeccCCCEEEEEcCCCcc-----eeeeccc-----cCCeeEEEEc----cCCcE-EEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 97 GGGQSGDIYMWEVASGRL-----LKKWHAH-----YRAVTCLVFS----EDGSF-LISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 97 ~~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
+++.||.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+.+........
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999999887 8888888 5999999999 99999 9999999999999996511100000
Q ss_pred cccccceecc-------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-------ccceeEEEEC
Q 012996 162 RASHLYLHSF-------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALD 227 (451)
Q Consensus 162 ~~~~~~~~~~-------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~ 227 (451)
.........+ ..|...|.+++|++++ ++++++.||.|++||+++++.+..+.. ...+.+++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG---LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS---EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc---eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 0001111133 4588999999999875 899999999999999999998888874 8899999999
Q ss_pred CCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeecc-------------CCcceeEEEEec-CCEEEEEcCCC
Q 012996 228 PAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSD-------------HSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 228 ~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
|++.+|++++.| |.|++||+.+. ..+..+.+ |...|.+++|+| +.+|++++.||
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 313 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 313 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred CCCCEEEEEecCCCCceEEEEECCCC---------cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC
Confidence 999999999999 99999999876 44666777 999999999999 99999999999
Q ss_pred cEEEEeCCCCceEEEee------cC---------------CCCeeEEEEEecC----------ceeeeccCCCCcccccc
Q 012996 291 MVRVWDPITHNIVRMFR------LA---------------KGPVNNILVVRRP----------LYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 291 ~i~iwd~~~~~~~~~~~------~~---------------~~~v~~l~~s~~~----------~~l~~~s~d~~i~iw~~ 339 (451)
.|++||+.+++++..+. .| ..+|++++|+|++ ++|++++.||.|++|++
T Consensus 314 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 314 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred eEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 99999999999999999 88 9999999999998 79999999999999998
Q ss_pred CCC
Q 012996 340 HGS 342 (451)
Q Consensus 340 ~~~ 342 (451)
.++
T Consensus 394 ~~g 396 (397)
T 1sq9_A 394 AGG 396 (397)
T ss_dssp EC-
T ss_pred CCC
Confidence 754
No 36
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-42 Score=321.06 Aligned_cols=296 Identities=15% Similarity=0.217 Sum_probs=250.6
Q ss_pred ceEEecceEeeccC-cccCC----------CCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 38 GLACVGQRFLASSQ-LREQP----------SASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 38 ~v~~~~~~~~~~~~-~l~~~----------~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
.+.+++ |+|+++ +++++ +.| +.|++||+.++. ......|...|.+++|+|++++|++|+.||.
T Consensus 14 ~v~~~~--~sp~g~~~l~~g~~~g~~~~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 14 RTATFA--WSHDKIPLLVSGTVSGTVDANFSTD-SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp ESCBCC--BCSSSSCEEEEBCBSSCCCSSCCCC-CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hcceEe--eCCCCCCEEEEEecCcccccccCCC-CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 355666 999987 77777 566 999999998765 3334457889999999999999999999999
Q ss_pred EEEEEcCC----CcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 104 IYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 104 i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.+....... ...........|...|
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN--YTPLTPGQSMSSVDEV 168 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT--CCCBCCCCSCCSSCCC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc--ccccccccccCCCCCe
Confidence 99999987 3577888999999999999998 899999999999999999763210000 0111223456799999
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-------ccceeEEEECCCC-CEEEEEeCCC---cEEEEEc
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-------PSVIDAIALDPAE-HVFYAGSRDG---SIYIAAL 247 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~i~~~~~~~~~-~~l~~~~~dg---~i~i~d~ 247 (451)
.+++|++++. .++++++.||.|++||+++++.+..+.. ...+.+++|+|++ .++++++.|+ .|++||+
T Consensus 169 ~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~ 247 (416)
T 2pm9_A 169 ISLAWNQSLA-HVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247 (416)
T ss_dssp CEEEECSSCT-TEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEET
T ss_pred eEEEeCCCCC-cEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeC
Confidence 9999999832 7999999999999999999998888773 6789999999987 6899999998 9999999
Q ss_pred cCCCCCCCCCCceeeeeec-cCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC-c
Q 012996 248 NAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP-L 323 (451)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~-~ 323 (451)
+... .+...+. +|...|++++|+| +.+|++++.||.|++||+.+++++..+..|.++|++++|+|++ .
T Consensus 248 ~~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 248 RNAN--------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp TSTT--------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred CCCC--------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 8853 3455666 8999999999998 8899999999999999999999999999999999999999999 8
Q ss_pred eeeeccCCCCccccccCCCCCCCc
Q 012996 324 YLNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 324 ~l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
+|++++.||.|++|++........
T Consensus 320 ~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp EEEECCSSSEEEEEESCCCCCSSC
T ss_pred EEEEEecCCcEEEEEccCCCCCcc
Confidence 999999999999999987655443
No 37
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=4.8e-42 Score=313.60 Aligned_cols=291 Identities=13% Similarity=0.169 Sum_probs=243.0
Q ss_pred CCCCceEEecceEeeccCcccCCCCC---CccEEEEECCCCceee--eecCCCCeeEEEECCC---CcEEEEeccCCCEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH---GTYIAGGGQSGDIY 105 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~ 105 (451)
+|...|.+++ |+|++..+++++.. ||.|++||+.++.... ...|...|.+++|+|+ +.+|++|+.||.|+
T Consensus 16 ~h~~~v~~~~--~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 93 (357)
T 3i2n_A 16 GFNYTVFDCK--WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH 93 (357)
T ss_dssp ECSSCEEEEE--ECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred CCCCceEEEE--EcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence 4678899999 99999766555432 4999999999877643 3357889999999998 69999999999999
Q ss_pred EEEcCCCc-ceeeeccccCCeeEEEE------ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC--
Q 012996 106 MWEVASGR-LLKKWHAHYRAVTCLVF------SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-- 176 (451)
Q Consensus 106 iwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 176 (451)
+||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||+.+. ......+..|.+
T Consensus 94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~----------~~~~~~~~~~~~~~ 163 (357)
T 3i2n_A 94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQK----------DDPVANMEPVQGEN 163 (357)
T ss_dssp EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSC----------SSCSEEECCCTTSC
T ss_pred EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCC----------CCcceeccccCCCC
Confidence 99999988 88899999999999955 678999999999999999999652 113344444433
Q ss_pred --ceeEEE----EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC---CCCEEEEEeCCCcEEEEEc
Q 012996 177 --RITDIV----IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP---AEHVFYAGSRDGSIYIAAL 247 (451)
Q Consensus 177 --~i~~i~----~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~ 247 (451)
.+.+++ |++++ .++++++.||.|++||+++++......+...+.+++|+| ++.+|++++.||.|++||+
T Consensus 164 ~~~v~~~~~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 164 KRDCWTVAFGNAYNQEE--RVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCCEEEEEEECCCC-CC--CEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCceEEEEEEeccCCCC--CEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 788888 56666 899999999999999999999887777899999999999 9999999999999999999
Q ss_pred cCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCC-------------------ceEEEe
Q 012996 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH-------------------NIVRMF 306 (451)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~-------------------~~~~~~ 306 (451)
+....... .....+.+|...|++++|+| +. +|++|+.||.|++||+.++ +++..+
T Consensus 242 ~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (357)
T 3i2n_A 242 RTQHPTKG----FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV 317 (357)
T ss_dssp EEEETTTE----EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred cCCCcccc----eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence 87532110 11223458999999999999 76 8999999999999998754 467788
Q ss_pred ecCCCCeeEEEEEecCceee-eccCCCCccccccCCC
Q 012996 307 RLAKGPVNNILVVRRPLYLN-LGSFSNPHTSSRRHGS 342 (451)
Q Consensus 307 ~~~~~~v~~l~~s~~~~~l~-~~s~d~~i~iw~~~~~ 342 (451)
..|.++|++++|+|++++|+ +++.||.+++|++...
T Consensus 318 ~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 89999999999999999998 8999999999998753
No 38
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.1e-41 Score=302.02 Aligned_cols=275 Identities=19% Similarity=0.313 Sum_probs=230.3
Q ss_pred EEEeecCCCCCCeEEEECccC-----ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996 3 LLIASSSVADTGIGCWDLESG-----AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK- 76 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~- 76 (451)
.+|++|+ .|++|++||+.+. ..+..+.+ |...|.+++ |+|+++++++++.| ++|++||+.+++....
T Consensus 31 ~~l~s~s-~D~~v~~W~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~s~dg~~l~s~s~D-~~v~~wd~~~~~~~~~~ 103 (319)
T 3frx_A 31 NLLLSAS-RDKTLISWKLTGDDQKFGVPVRSFKG---HSHIVQDCT--LTADGAYALSASWD-KTLRLWDVATGETYQRF 103 (319)
T ss_dssp TEEEEEE-TTSEEEEEEEEEETTEEEEEEEEEEC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred cEEEEec-CCccEEEecCCCCCccccccceEEeC---CcccEEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCCeeEEE
Confidence 4789999 9999999998643 34455554 567788888 99999999999998 9999999998876543
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC------CcEEEEeeCCCcEEEee
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWS 150 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd 150 (451)
..|...|.+++|+|++.+|++|+.|+.|++||+. +..+..+.+|...|.++.|+|. +..|++++.|+.|++||
T Consensus 104 ~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd 182 (319)
T 3frx_A 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 182 (319)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEE
Confidence 5688999999999999999999999999999985 5677888899999999999984 44899999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+.+ ......+.+|...|.+++|+|++ .+|++++.||.|++||+.+++.+..+.....+.+++|+|++
T Consensus 183 ~~~-----------~~~~~~~~~h~~~v~~~~~sp~g--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 183 LNQ-----------FQIEADFIGHNSNINTLTASPDG--TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp TTT-----------TEEEEEECCCCSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred CCc-----------chhheeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence 954 44566788999999999999998 89999999999999999999999999888899999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
.+|++++.+ .+++|++......... ..........|...+.+++|+| +++|++|+.||.|++||+.++
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDL-RPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEE-CCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeecc-CccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 999988765 4999998764210000 0000011234567899999999 999999999999999998654
No 39
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.3e-42 Score=311.50 Aligned_cols=275 Identities=16% Similarity=0.202 Sum_probs=219.5
Q ss_pred EEEeecCCC------CCCeEEEECccCceeeeeec-CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCcee-
Q 012996 3 LLIASSSVA------DTGIGCWDLESGAEQLRYKS-CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE- 74 (451)
Q Consensus 3 ~~l~s~~~~------dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~- 74 (451)
.+||+|+ . |+.|++|+..++.....+.. ...|...|.+++ |+|++.+++ ++.+ |+|+|||+.+++..
T Consensus 55 ~~las~s-~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~s~d~~~l~-~s~d-g~v~lWd~~~~~~~~ 129 (357)
T 4g56_B 55 ALLLAAS-SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVA--WVSEKGILV-ASDS-GAVELWEILEKESLL 129 (357)
T ss_dssp CEEEEEE-CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEE--EETTTEEEE-EETT-SCEEEC--------C
T ss_pred CEEEEEc-CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEE--EcCCCCEEE-EECC-CEEEEeeccccceeE
Confidence 3688888 6 77899999888766544321 124567799999 999987664 5556 99999999876533
Q ss_pred ----eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEe
Q 012996 75 ----VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIW 149 (451)
Q Consensus 75 ----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vw 149 (451)
....|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++|
T Consensus 130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~w 209 (357)
T 4g56_B 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209 (357)
T ss_dssp CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEEC
T ss_pred EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEE
Confidence 2235788999999999999999999999999999999999999999999999999999774 78999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECC
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDP 228 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~ 228 (451)
|++++ .......+..|...+.+++|+|++. .+|++|+.|+.|++||+++++.+..+. +...|.+++|+|
T Consensus 210 d~~~~---------~~~~~~~~~~~~~~v~~v~~sp~~~-~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp 279 (357)
T 4g56_B 210 DTRKP---------KPATRIDFCASDTIPTSVTWHPEKD-DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSY 279 (357)
T ss_dssp CTTSS---------SCBCBCCCTTCCSCEEEEEECTTST-TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECS
T ss_pred ECCCC---------ceeeeeeeccccccccchhhhhccc-ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcC
Confidence 99652 2222334456788899999998753 689999999999999999999888887 788999999999
Q ss_pred CC-CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCce
Q 012996 229 AE-HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNI 302 (451)
Q Consensus 229 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~ 302 (451)
++ ++|++|+.|+.|++||++++ +.+ ...+|...|++++|+| +.+|++|+.||+|++|++.+...
T Consensus 280 ~~~~~lasgs~D~~i~iwd~~~~---------~~~-~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 280 HSSPFLASISEDCTVAVLDADFS---------EVF-RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SSSCCEEEEETTSCEEEECTTSC---------EEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CCCCEEEEEeCCCEEEEEECCCC---------cEe-EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 87 57999999999999999875 333 3458999999999998 78999999999999999976433
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.2e-42 Score=314.92 Aligned_cols=297 Identities=13% Similarity=0.121 Sum_probs=241.5
Q ss_pred ECccCceeeeeecCCCCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCceeeee---cCCCCeeEEEECC-CCc
Q 012996 19 DLESGAEQLRYKSCASPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQVEVKS---LPAEPIKPIAANS-HGT 93 (451)
Q Consensus 19 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~~~~~---~~~~~v~~~~~~~-~~~ 93 (451)
++.+......+. +|...|.+++ |+|++ +++++++.| |.|++||+.++...... .|...|.+++|+| +++
T Consensus 59 ~~~~~~~~~~~~---~h~~~v~~~~--~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 59 SLKSYKLHRTAS---PFDRRVTSLE--WHPTHPTTVAVGSKG-GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp HHTTCEEEEEEC---CCSSCEEEEE--ECSSCTTEEEEEEBT-SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred cccccceEEecc---CCCCCEEEEE--ECCCCCCEEEEEcCC-CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence 334445555554 4668899999 99999 889999888 99999999977765443 4889999999999 789
Q ss_pred EEEEeccCCCEEEEEcCCCcceeeecc---ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 94 YIAGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 94 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
+|++++.||.|++||+.+ ..+..+.. |...|.+++|+|++++|++|+.||.|++||++ ...+..
T Consensus 133 ~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~------------~~~~~~ 199 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD------------GHEIFK 199 (383)
T ss_dssp EEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT------------SCEEEE
T ss_pred EEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC------------CCEEEE
Confidence 999999999999999985 55555543 44889999999999999999999999999983 235667
Q ss_pred ccCCcCceeEEEEeecCCee-EEEEeeCCCcEEEEEcCC----CceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEE
Q 012996 171 FTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLK----GRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYI 244 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~-~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 244 (451)
+.+|...|.+++|++++ . ++++++.|+.|++||+++ +..+..+.+...|.+++|+| ++.+|++++.|+.|++
T Consensus 200 ~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~i 277 (383)
T 3ei3_B 200 EKLHKAKVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRV 277 (383)
T ss_dssp EECSSSCEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred eccCCCcEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence 78899999999999988 5 999999999999999998 66777778999999999999 9999999999999999
Q ss_pred EEccCCCCCCCCCCceeeeeeccCC----------cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec--CCC
Q 012996 245 AALNAESPSTSSYGMHIIGSLSDHS----------KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--AKG 311 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~ 311 (451)
||+++......... .......|. ..+..++|+| +.+ +|+.||.|++||+.+++++..+.. |.+
T Consensus 278 wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~ 353 (383)
T 3ei3_B 278 YSSYDWSKPDQIII--HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAG 353 (383)
T ss_dssp EETTBTTSCSEEEE--CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCS
T ss_pred EECCCCcccccccc--ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCc
Confidence 99988653211000 000111122 3444566666 555 778999999999999999999987 457
Q ss_pred CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 312 PVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 312 ~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.+..++|+|++++|++++ ||.|++|++.+
T Consensus 354 ~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 354 IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 788889999999999997 99999999864
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-41 Score=335.58 Aligned_cols=285 Identities=19% Similarity=0.309 Sum_probs=240.8
Q ss_pred CCCCceEEecceEeecc-CcccCCCCCCccEEEEECCCCce------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 34 SPPHGLACVGQRFLASS-QLREQPSASSGSILYWSWSKPQV------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~-~~l~~~~~d~g~i~vw~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
+|...|.+++ |+|++ .+|++++.| ++|++|++.+... .....|...|.+++|+|++++|++|+.||.|+|
T Consensus 380 ~H~~~V~~v~--~~~~~~~~l~s~s~D-~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 380 AHTDMVTAIA--TPIDNADIIVSASRD-KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp CCSSCEEEEE--CCTTCCSEEEEEETT-SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cCCceeEEEE--ecCCCCCEEEEEeCC-CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 4668899998 99875 678888887 9999999875431 234568899999999999999999999999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||+... ..........+|...|.+++|+++
T Consensus 457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--------CKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--------EEEEECSSTTSCSSCEEEEEECSC
T ss_pred EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--------cceeeccCCCCCCCcEEEEEEeCC
Confidence 999999999999999999999999999999999999999999998431 111112234579999999999998
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
+....+++++.|++|++||+++++....+. |...|.+++|+|++++|++|+.||.|++||+.+. ..+..+
T Consensus 529 ~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---------~~~~~~ 599 (694)
T 3dm0_A 529 TLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---------KKLYSL 599 (694)
T ss_dssp SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---------EEEECC
T ss_pred CCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------ceEEEe
Confidence 755689999999999999999998888776 8889999999999999999999999999999886 334444
Q ss_pred ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-------------------CeeEEEEEecCcee
Q 012996 266 SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-------------------PVNNILVVRRPLYL 325 (451)
Q Consensus 266 ~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------~v~~l~~s~~~~~l 325 (451)
. +...|.+++|+| +.+|+++ .|+.|++||+.++..+..+..+.. .+++++|+|+|++|
T Consensus 600 ~-~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l 677 (694)
T 3dm0_A 600 E-ANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677 (694)
T ss_dssp B-CSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEE
T ss_pred c-CCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEE
Confidence 4 456899999999 6666555 566799999999998887754321 37899999999999
Q ss_pred eeccCCCCccccccC
Q 012996 326 NLGSFSNPHTSSRRH 340 (451)
Q Consensus 326 ~~~s~d~~i~iw~~~ 340 (451)
++|+.||.|++|++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999975
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-41 Score=343.55 Aligned_cols=328 Identities=12% Similarity=0.079 Sum_probs=243.9
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--------
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-------- 75 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-------- 75 (451)
+|++++ .|++|+|||+.+++.+..+. +...|.+++ |+|+++++++++.| |.|++||+.+.....
T Consensus 71 ~L~S~s-~D~~v~lWd~~~~~~~~~~~----~~~~V~~v~--~sp~g~~l~sgs~d-g~V~lwd~~~~~~~~~~i~~~~~ 142 (902)
T 2oaj_A 71 YLVVIN-AKDTVYVLSLYSQKVLTTVF----VPGKITSID--TDASLDWMLIGLQN-GSMIVYDIDRDQLSSFKLDNLQK 142 (902)
T ss_dssp EEEEEE-TTCEEEEEETTTCSEEEEEE----CSSCEEEEE--CCTTCSEEEEEETT-SCEEEEETTTTEEEEEEECCHHH
T ss_pred EEEEEE-CcCeEEEEECCCCcEEEEEc----CCCCEEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCccccceeccccc
Confidence 589999 99999999999999988885 346789999 99999999999998 999999998876531
Q ss_pred ----eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccc------------------cCCeeEEEEcc
Q 012996 76 ----KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAH------------------YRAVTCLVFSE 132 (451)
Q Consensus 76 ----~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~~~ 132 (451)
...|.++|.+++|+|+ +..+++|+.||.| +||+++++.+..+..| ...|.+++|+|
T Consensus 143 ~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp 221 (902)
T 2oaj_A 143 SSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP 221 (902)
T ss_dssp HHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred cccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence 1347789999999996 5789999999999 9999999888877655 57899999999
Q ss_pred CCcEEEEeeCCCcEEEeeCcchhhhhhhhcc---cccce----ecccCCcCceeEEEEeecC------------------
Q 012996 133 DGSFLISGSEDGCVRIWSLLTVFEECESQRA---SHLYL----HSFTGHTLRITDIVIGYGG------------------ 187 (451)
Q Consensus 133 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~----~~~~~~~~~i~~i~~~~~~------------------ 187 (451)
+|++|++|+.||.|++||++++......... ..... ..-..|...|.+++|++..
T Consensus 222 dg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 222 NSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp TSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 9999999999999999999764221100000 00000 0000112233344333210
Q ss_pred -------------------------------------------------------------CeeEEEEeeCCCcEEEEEc
Q 012996 188 -------------------------------------------------------------VSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 188 -------------------------------------------------------------~~~~l~s~~~d~~i~iwd~ 206 (451)
+...+++++.||.|++||+
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 0124555666777788877
Q ss_pred CCCceeee-------ee-cccc----------------------------------eeEEEECCCCCEEEEEeCCCcEEE
Q 012996 207 LKGRLLRN-------IV-FPSV----------------------------------IDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 207 ~~~~~~~~-------~~-~~~~----------------------------------i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
.++..... +. +... +.+++|+|++++|++|+.|++|++
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrl 461 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRI 461 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEE
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEE
Confidence 66543221 00 1122 334556789999999999999999
Q ss_pred EEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC------------------
Q 012996 245 AALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH------------------ 300 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~------------------ 300 (451)
||+..+..... . .....+ .+|...|++++|+| +++||+|+.||+|+|||+.++
T Consensus 462 Wd~~~g~~~~~-~--~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 462 YDASHGDIQDN-A--SFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EESSCCTTTTT-B--CEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EECCCccccCC-c--eEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 99988642110 0 000011 27999999999999 999999999999999998765
Q ss_pred ---------------------------ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 301 ---------------------------NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 301 ---------------------------~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
+++..+.+|.++|++++||||| +||+|+.|++|++||+.+..+
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 2477888999999999999999 999999999999999887543
No 43
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-40 Score=326.02 Aligned_cols=316 Identities=15% Similarity=0.115 Sum_probs=258.6
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCceeeee-----
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEVKS----- 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~~~~~----- 77 (451)
+|++++ .||.|++||+.+++.+..+..|......+.+++ |+|+ ++++++++.+ |.|++||+.+++.....
T Consensus 175 ~l~~~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 175 RSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE--FSPDSGEFVITVGSD-RKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp EEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE--ECSTTCCEEEEEETT-CCEEEEETTTCCEEEECCBTTB
T ss_pred EEEEEe-CCCcEEEEeCCCcceeeeecccCCCCceEEEEE--ECCCCCCEEEEEeCC-CeEEEEECCCCCEeEEeccccc
Confidence 688999 999999999999999988876654333789999 9999 9999999988 99999999988877665
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccc----cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAH----YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.|...|.+++|+ ++.+|++++.||.|++||+.+++.+..+..+ ...+.++.|. ++.++++++.||.|++||+.+
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 788999999999 9999999999999999999999998888766 4678888886 888999999999999999865
Q ss_pred hhhhhhhhccccc------------------------ceecccCC-----------------------------------
Q 012996 154 VFEECESQRASHL------------------------YLHSFTGH----------------------------------- 174 (451)
Q Consensus 154 ~~~~~~~~~~~~~------------------------~~~~~~~~----------------------------------- 174 (451)
............. .+. ..|
T Consensus 329 ~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 406 (615)
T 1pgu_A 329 DEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMH--QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG 406 (615)
T ss_dssp EEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEE--CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred CcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhc--CcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence 3211000000000 000 122
Q ss_pred ---------------------------------------cCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCcee-e
Q 012996 175 ---------------------------------------TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLL-R 213 (451)
Q Consensus 175 ---------------------------------------~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~-~ 213 (451)
...+.+++++ + .++++++. |+.|++||+.+++.. .
T Consensus 407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~l~~~~~~d~~i~~~~~~~~~~~~~ 482 (615)
T 1pgu_A 407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q--NYVAVGLEEGNTIQVFKLSDLEVSFD 482 (615)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S--SEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C--CEEEEeecCCCeEEEEECCCcccccc
Confidence 3334444444 2 56777777 888888888776554 2
Q ss_pred eee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-----------C
Q 012996 214 NIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-----------G 280 (451)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-----------~ 280 (451)
.+. +...|.+++|+|++++|++++.||.|++||+.+. ..+..+.+ |...|++++|+| +
T Consensus 483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~ 553 (615)
T 1pgu_A 483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553 (615)
T ss_dssp CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---------cceeEeecCCCCceeEEEEcCccccccccccCC
Confidence 332 7789999999999999999999999999999886 55666777 999999999998 6
Q ss_pred CEEEEEcCCCcEEEEeCCCC-ceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 281 DLLISGSEDGMVRVWDPITH-NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 281 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.+|++++.||.|++||+.++ +++..+.+|.++|++++|+|+++ |++++.||.+++|++..
T Consensus 554 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred CEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 79999999999999999998 78999999999999999999999 99999999999999764
No 44
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-42 Score=328.53 Aligned_cols=306 Identities=11% Similarity=0.041 Sum_probs=226.5
Q ss_pred EEeecCCCCCCeEEEECccCceee----eeecCCCCCCceEEecceEeec------cCcccCCCCCCccEEEEECCCCce
Q 012996 4 LIASSSVADTGIGCWDLESGAEQL----RYKSCASPPHGLACVGQRFLAS------SQLREQPSASSGSILYWSWSKPQV 73 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~------~~~l~~~~~d~g~i~vw~~~~~~~ 73 (451)
+||+++ .|++|+|||+.+++... .+.. +...|..++ |+|+ +.+||+++.| |+|++||+..+..
T Consensus 175 ~laS~s-~D~tI~iWd~~~~~~~~~~~~~l~~---~~~~V~~v~--wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~ 247 (524)
T 2j04_B 175 MFDKEK-HSSCIQIFKMNTSTLHCVKVQTIVH---SFGEVWDLK--WHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNAT 247 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEE---CCCSEEEEE--ECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSS
T ss_pred hhccCC-CCceEEEEEccCCCCCceEEEEEEe---cCCcEEEEE--ECCCCCCCCCCceEEEEecC-CeEEEEEcCCCcc
Confidence 467788 99999999998877532 2333 345688888 9986 5789999888 9999999976532
Q ss_pred e------------eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccCCeeEE--EEccCC-cEE
Q 012996 74 E------------VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYRAVTCL--VFSEDG-SFL 137 (451)
Q Consensus 74 ~------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l 137 (451)
. ....|...|.+++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++ .|+|++ .+|
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEE
Confidence 1 234577899999999864 89999999999999998774 455688999999999 567887 899
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc--CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT--LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI 215 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 215 (451)
+||+.|++|++||+++.. ....+.+|. ..|.+++|+|++ ..+++++.|++|++||++++..+..+
T Consensus 327 aS~S~D~tvklWD~~~~~-----------~~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~~~l 393 (524)
T 2j04_B 327 STVAVDGYFYIFNPKDIA-----------TTKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAVHPL 393 (524)
T ss_dssp EEEETTSEEEEECGGGHH-----------HHCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCCEEE
T ss_pred EEeccCCeEEEEECCCCC-----------cccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccceee
Confidence 999999999999996532 223344454 357899999987 68999999999999999998876666
Q ss_pred e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-----cCCcceeEEEEec-CCEEEEEcC
Q 012996 216 V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-----DHSKAVTCLAYST-GDLLISGSE 288 (451)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~-~~~l~s~~~ 288 (451)
. |...|.+++|+|++.+|++|+.||.|++||+.... +.... .+...|.+++|+| +..+ ....
T Consensus 394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~----------~~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~ 462 (524)
T 2j04_B 394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRL----------LHGIKNSSATQKSLRLWKWDYSIKDDKY-RIDS 462 (524)
T ss_dssp EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSST----------TTCC------CCCCEEEECBCCSSSCEE-EECC
T ss_pred ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhh----------ccccccCccceeeeEEEEeccCCCCCeE-EccC
Confidence 5 88999999999999999999999999999986532 11111 1223578999999 7644 3322
Q ss_pred CCcEEEEeCC-CCceEEEeecCCCCeeEEEEEecCc---eeeeccCCCCccccccCCCC
Q 012996 289 DGMVRVWDPI-THNIVRMFRLAKGPVNNILVVRRPL---YLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 289 dg~i~iwd~~-~~~~~~~~~~~~~~v~~l~~s~~~~---~l~~~s~d~~i~iw~~~~~~ 343 (451)
.+.+|+.. ++.++.++.+|.++|.+++|+|++. .+|+|+.||.|+||++.+..
T Consensus 463 --~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 463 --SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp --CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred --CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 23445443 5778889999999999999999964 99999999999999988653
No 45
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2e-41 Score=316.68 Aligned_cols=280 Identities=20% Similarity=0.208 Sum_probs=238.0
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 118 (451)
+..++ |+|+++++++++.| |.|++||+.+............+....|+|++++|++|+.||.|++||+.+++....+
T Consensus 59 ~~~~~--~s~~g~~l~~~~~d-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 135 (420)
T 3vl1_A 59 GKGNT--FEKVGSHLYKARLD-GHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID 135 (420)
T ss_dssp CTTCE--EEEEETTEEEEEET-TEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEET
T ss_pred cccee--eeecCCeEEEEEcC-CcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeec
Confidence 33455 99999999999998 9999999987665433333344555578999999999999999999999999998888
Q ss_pred ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
.+|.+.|.+++|+|++++|++|+.||.|++||+.+ ...+..+.+|...|.+++|+|++ .+|++++.|
T Consensus 136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~--~~l~s~~~d 202 (420)
T 3vl1_A 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-----------GSNPRTLIGHRATVTDIAIIDRG--RNVLSASLD 202 (420)
T ss_dssp TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCCCEEEECCSSCEEEEEEETTT--TEEEEEETT
T ss_pred ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-----------CcCceEEcCCCCcEEEEEEcCCC--CEEEEEcCC
Confidence 99999999999999999999999999999999954 34566778999999999999988 899999999
Q ss_pred CcEEEEEcCCCceeeeee----cc---------------------cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 199 RTCKVWSLLKGRLLRNIV----FP---------------------SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~----~~---------------------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
+.|++||+++++.+..+. +. ..+.+++|+|++++|++|+.||.|++||+++..
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-- 280 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE-- 280 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--
Confidence 999999999998888775 22 344555668999999999999999999998864
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCce-EEEeec-CCCCeeEEEEEecCceeeecc
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNI-VRMFRL-AKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~s 329 (451)
........|...|++++|+| +. +|++|+.||.|++||+.+++. +..+.. |..+|+++ +++++.+|++++
T Consensus 281 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~ 353 (420)
T 3vl1_A 281 ------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSG 353 (420)
T ss_dssp ------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEET
T ss_pred ------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEec
Confidence 33444456889999999999 77 999999999999999998754 777776 56677777 556889999999
Q ss_pred CCCCccccccCCCC
Q 012996 330 FSNPHTSSRRHGSQ 343 (451)
Q Consensus 330 ~d~~i~iw~~~~~~ 343 (451)
.||.+++|++....
T Consensus 354 ~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 354 FDTSIKLDIISDPE 367 (420)
T ss_dssp TTEEEEEEEECCTT
T ss_pred CCccEEEEeccCCC
Confidence 99999999988643
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-41 Score=356.45 Aligned_cols=326 Identities=19% Similarity=0.225 Sum_probs=282.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-------
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV------- 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~------- 75 (451)
.++++|+ .||.|++||+.+++.+..+.+ |...|.+++ |+|+++++++++.| |.|++||+.++....
T Consensus 714 ~~l~sg~-~d~~v~vwd~~~~~~~~~~~~---h~~~v~~~~--~sp~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~ 786 (1249)
T 3sfz_A 714 LLLATGS-NDFFLKLWDLNQKECRNTMFG---HTNSVNHCR--FSPDDELLASCSAD-GTLRLWDVRSANERKSINVKRF 786 (1249)
T ss_dssp CEEEEEE-TTSCEEEEETTSSSEEEEECC---CSSCEEEEE--ECSSTTEEEEEESS-SEEEEEEGGGTEEEEEEECCCC
T ss_pred eEEEEEe-CCCeEEEEECCCcchhheecC---CCCCEEEEE--EecCCCEEEEEECC-CeEEEEeCCCCcccceeccccc
Confidence 4688999 999999999999999888775 556788888 99999999999998 999999986543211
Q ss_pred -------------------------------------------------eecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 76 -------------------------------------------------KSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 76 -------------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
...|...|.+++|+|+++++++|+.||.|++
T Consensus 787 ~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 866 (1249)
T 3sfz_A 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866 (1249)
T ss_dssp C--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEE
T ss_pred ccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEE
Confidence 1145678999999999999999999999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh---------------------------
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE--------------------------- 159 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------------- 159 (451)
||+.++..+..+.+|.+.|.+++|+|++++|++++.||.|++|++.+......
T Consensus 867 wd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred EEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 99999999999999999999999999999999999999999999754211000
Q ss_pred -----------------------------------------hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996 160 -----------------------------------------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 160 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
...........+.+|...|.+++|++++ .++++++.|
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d 1024 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG--KTLISSSED 1024 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSS--SCEEEECSS
T ss_pred EEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCC--CEEEEEcCC
Confidence 0001123345567899999999999998 899999999
Q ss_pred CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996 199 RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
|.|++||+.+++......+...+.+++|+|++ .+++++.||.|++||+.++ .....+.+|...|++++|+
T Consensus 1025 g~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1025 SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITG---------RIERDFTCHQGTVLSCAIS 1094 (1249)
T ss_dssp SBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTT---------CCCEEEECCSSCCCCEEEC
T ss_pred CEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCC---------ceeEEEcccCCcEEEEEEC
Confidence 99999999999888777799999999999965 5788999999999999886 4466788899999999999
Q ss_pred c-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996 279 T-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 279 ~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
| +.+|++++.||+|++||+.+++++..+.+|.++|++++|+|+|++|++++.||.|++|++.++.+...
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~ 1164 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCC
T ss_pred CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE
Confidence 9 99999999999999999999999999999999999999999999999999999999999987765543
No 47
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.3e-40 Score=299.44 Aligned_cols=275 Identities=18% Similarity=0.275 Sum_probs=222.4
Q ss_pred EEEeecCCCCCCeEEEECccCc-------eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee
Q 012996 3 LLIASSSVADTGIGCWDLESGA-------EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~ 75 (451)
.+||+|+ .|++|++||+.+++ ....+. +|...|.+++ |+|++.++++++.| ++|++||+.++....
T Consensus 40 ~~l~sgs-~D~~v~iWd~~~~~~~~~~~~~~~~l~---~h~~~V~~~~--~~~~~~~l~s~s~D-~~v~lwd~~~~~~~~ 112 (343)
T 2xzm_R 40 PVLISGS-RDKTVMIWKLYEEEQNGYFGIPHKALT---GHNHFVSDLA--LSQENCFAISSSWD-KTLRLWDLRTGTTYK 112 (343)
T ss_dssp CEEEEEE-TTSCEEEEEECSSCCSSBSEEEEEEEC---CCSSCEEEEE--ECSSTTEEEEEETT-SEEEEEETTSSCEEE
T ss_pred CEEEEEc-CCCEEEEEECCcCCcccccccccchhc---cCCCceEEEE--ECCCCCEEEEEcCC-CcEEEEECCCCcEEE
Confidence 3789999 99999999987543 333444 5667899999 99999999999998 999999999877654
Q ss_pred e-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCC----------cEEEEee
Q 012996 76 K-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDG----------SFLISGS 141 (451)
Q Consensus 76 ~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~----------~~l~s~~ 141 (451)
. ..|...|.+++|+|++++|++|+.|+.|++||+... ..... ..|...|.+++|+|++ .+|++++
T Consensus 113 ~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~ 191 (343)
T 2xzm_R 113 RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191 (343)
T ss_dssp EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE
T ss_pred EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc
Confidence 3 468899999999999999999999999999998743 33333 3788999999999986 7899999
Q ss_pred CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCceeeeeecccc
Q 012996 142 EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRLLRNIVFPSV 220 (451)
Q Consensus 142 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~ 220 (451)
.||.|++||.. ......+.+|...|.+++|+|++ .+|++++.||.|++||+. .......+.+...
T Consensus 192 ~d~~i~iwd~~------------~~~~~~~~~h~~~v~~~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~ 257 (343)
T 2xzm_R 192 WDGRLKVWNTN------------FQIRYTFKAHESNVNHLSISPNG--KYIATGGKDKKLLIWDILNLTYPQREFDAGST 257 (343)
T ss_dssp TTSEEEEEETT------------TEEEEEEECCSSCEEEEEECTTS--SEEEEEETTCEEEEEESSCCSSCSEEEECSSC
T ss_pred CCCEEEEEcCC------------CceeEEEcCccccceEEEECCCC--CEEEEEcCCCeEEEEECCCCcccceeecCCCc
Confidence 99999999952 23455678899999999999998 899999999999999994 4445555556778
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCC--CCC--CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPST--SSY--GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
|.+++|+|++.+++++ .|+.|++||+.+..... ... .........+|...|++++|+| +.+|++|+.||.|++|
T Consensus 258 v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w 336 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTF 336 (343)
T ss_dssp EEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEE
Confidence 9999999999887755 57889999998764321 000 0000111237888999999999 9999999999999999
Q ss_pred eCCCC
Q 012996 296 DPITH 300 (451)
Q Consensus 296 d~~~~ 300 (451)
++.++
T Consensus 337 ~~~~g 341 (343)
T 2xzm_R 337 SFETS 341 (343)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 98654
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-40 Score=310.66 Aligned_cols=301 Identities=13% Similarity=0.189 Sum_probs=247.6
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEEC----CCCc------eeeee-c-
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW----SKPQ------VEVKS-L- 78 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~----~~~~------~~~~~-~- 78 (451)
...+.+||+........... |...|.+++ |+|+++ ++++++.| |.|++|++ .++. ..... .
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIV---KLDNIVSST--WNPLDESILAYGEKN-SVARLARIVETDQEGKKYWKLTIIAELRHP 97 (425)
T ss_dssp ----------CCCEECEEEE---ECSCCSEEE--ECSSCTTEEEEEETB-TEEEEEEEEEC------CEEEEEEEEEECC
T ss_pred ccccccccchhhhhheeeee---ccCceEEEE--ECCCCCcEEEEecCC-ceEEEEEEecccCCcccccccccccccccc
Confidence 34567888765544433332 446677888 999999 99999888 99999999 7766 22221 2
Q ss_pred ---------CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 79 ---------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 79 ---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
|...|.+++|+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 98 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 456999999999999999999999999999 6788888999999999999999999999999999999999
Q ss_pred eCcchhhhhhhhcccccceecccCCcCc---------------eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee
Q 012996 150 SLLTVFEECESQRASHLYLHSFTGHTLR---------------ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN 214 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 214 (451)
|+.+ ...+..+..+... +.+++|++++ .+++++.+|.|++||+.+++.+..
T Consensus 177 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~d~~~~~~~~~ 242 (425)
T 1r5m_A 177 NVIS-----------GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD---KFVIPGPKGAIFVYQITEKTPTGK 242 (425)
T ss_dssp ETTT-----------TEEEEEECCC---------------CCCBSCCEEEETT---EEEEECGGGCEEEEETTCSSCSEE
T ss_pred ECCC-----------CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC---EEEEEcCCCeEEEEEcCCCceeee
Confidence 9955 3344445555554 8999999875 689999999999999999988877
Q ss_pred ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (451)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i 292 (451)
+. +...|.+++|+|++++|++++.||.|++||+... ..+..+.+|...|.+++|+| + ++++++.||.|
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i 312 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSV 312 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcE
Confidence 76 7889999999999999999999999999999875 34566778999999999999 7 99999999999
Q ss_pred EEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
++||+.+++.+..+..|..+|.+++|+|++++|++++.||.+++|++....
T Consensus 313 ~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 313 RLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 999999999999999999999999999999999999999999999987654
No 49
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-40 Score=294.86 Aligned_cols=284 Identities=18% Similarity=0.259 Sum_probs=245.9
Q ss_pred ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee-eecCCCCeeEEEECCCCcEEEEeccCC
Q 012996 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV-KSLPAEPIKPIAANSHGTYIAGGGQSG 102 (451)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg 102 (451)
+....+.+ |...|.+++ | |+++++++++.| |.|++||+.+..... ...|...|.+++|+|++++|++|+.||
T Consensus 9 ~~~~~l~~---h~~~v~~~~--~-~~~~~l~s~~~d-g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 9 QLSATLKG---HDQDVRDVV--A-VDDSKVASVSRD-GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EEEEEECC---CSSCEEEEE--E-EETTEEEEEETT-SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTS
T ss_pred HHHHHhhC---CCCCcEEEE--e-cCCCEEEEEEcC-CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCC
Confidence 45555554 567888888 9 999999999998 999999998776543 345789999999999999999999999
Q ss_pred CEEEEEcCCC---cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996 103 DIYMWEVASG---RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (451)
Q Consensus 103 ~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (451)
.|++|++... +.+..+.+|...|.++.| ++++|++++.||.|++||. ......+..|...+.
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~-------------~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE-------------GSLVYNLQAHNASVW 146 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET-------------TEEEEEEECCSSCEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC-------------CcEEEecccCCCcee
Confidence 9999998765 557778899999999999 4779999999999999994 224566778999999
Q ss_pred EEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC
Q 012996 180 DIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS 256 (451)
Q Consensus 180 ~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 256 (451)
++++.+ ++ ..+++++.||.|++||. .+....+. +...+.+++|+|++. +++++.||.|++||+++.
T Consensus 147 ~~~~~~~~~--~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~------ 215 (313)
T 3odt_A 147 DAKVVSFSE--NKFLTASADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG------ 215 (313)
T ss_dssp EEEEEETTT--TEEEEEETTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC------
T ss_pred EEEEccCCC--CEEEEEECCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch------
Confidence 999998 55 79999999999999994 44444444 788999999999998 999999999999999876
Q ss_pred CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 257 YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 257 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
..+..+.+|...|++++|+| + .|++++.||.|++||+.+++++..+..|..+|++++|+|+++ +++++.||.++
T Consensus 216 ---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 216 ---DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp ---CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred ---hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 45777889999999999999 6 799999999999999999999999999999999999999998 66789999999
Q ss_pred ccccCCCCCC
Q 012996 336 SSRRHGSQLP 345 (451)
Q Consensus 336 iw~~~~~~~~ 345 (451)
+|++......
T Consensus 291 iw~~~~~~~~ 300 (313)
T 3odt_A 291 IFSQEKSRWA 300 (313)
T ss_dssp EEESCGGGCC
T ss_pred EEeCCCCcee
Confidence 9998876543
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-40 Score=349.82 Aligned_cols=333 Identities=17% Similarity=0.178 Sum_probs=278.6
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||+|+ .||+|++||+.+++.+..+.+ |...|.+++ |+|+++++++++.| |.|++||+.++..... ..|..
T Consensus 628 ~~l~s~~-~d~~i~vw~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~ 700 (1249)
T 3sfz_A 628 QRIASCG-ADKTLQVFKAETGEKLLDIKA---HEDEVLCCA--FSSDDSYIATCSAD-KKVKIWDSATGKLVHTYDEHSE 700 (1249)
T ss_dssp SEEEEEE-TTSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEEe-CCCeEEEEECCCCCEEEEecc---CCCCEEEEE--EecCCCEEEEEeCC-CeEEEEECCCCceEEEEcCCCC
Confidence 3689999 999999999999999988875 557788999 99999999999988 9999999998876544 46889
Q ss_pred CeeEEEECC--CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANS--HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.|.+++|+| ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.||.|++||+.+......
T Consensus 701 ~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~ 780 (1249)
T 3sfz_A 701 QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780 (1249)
T ss_dssp CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEE
T ss_pred cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccce
Confidence 999999999 566899999999999999999999999999999999999999999999999999999999976432110
Q ss_pred hhc-------------------------------------------cccccee-cccCCcCceeEEEEeecCCeeEEEEe
Q 012996 160 SQR-------------------------------------------ASHLYLH-SFTGHTLRITDIVIGYGGVSATIVSA 195 (451)
Q Consensus 160 ~~~-------------------------------------------~~~~~~~-~~~~~~~~i~~i~~~~~~~~~~l~s~ 195 (451)
... ....... ...+|...|.+++|++++ .+++++
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~ 858 (1249)
T 3sfz_A 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HLAVIA 858 (1249)
T ss_dssp EECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST--TEEEEE
T ss_pred ecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CEEEEE
Confidence 000 0000111 123788999999999998 899999
Q ss_pred eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCc---------------
Q 012996 196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGM--------------- 259 (451)
Q Consensus 196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--------------- 259 (451)
+.||.|++||+.++..+..+. |...|.+++|+|++.+|++++.||.|++|++............
T Consensus 859 ~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1249)
T 3sfz_A 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938 (1249)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEE
T ss_pred eCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEE
Confidence 999999999999998888877 8889999999999999999999999999998642111000000
Q ss_pred --------e-----eeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996 260 --------H-----IIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL 325 (451)
Q Consensus 260 --------~-----~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 325 (451)
. .......+...+.+++|+| +.++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1018 (1249)
T 3sfz_A 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018 (1249)
T ss_dssp EEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCE
T ss_pred EecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEE
Confidence 0 0001112356799999999 9999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCccccccCCCCC
Q 012996 326 NLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 326 ~~~s~d~~i~iw~~~~~~~ 344 (451)
++++.||.+++|+..++..
T Consensus 1019 ~s~~~dg~i~vwd~~~~~~ 1037 (1249)
T 3sfz_A 1019 ISSSEDSVIQVWNWQTGDY 1037 (1249)
T ss_dssp EEECSSSBEEEEETTTTEE
T ss_pred EEEcCCCEEEEEECCCCce
Confidence 9999999999999886543
No 51
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-40 Score=292.31 Aligned_cols=251 Identities=18% Similarity=0.176 Sum_probs=211.7
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC--CcceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeC
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS--GRLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~ 151 (451)
...|.+.|.+++|+|+|++||+|+.|+.|+|||+.. .+.+.++.+|.++|.+++|++ ++++|++|+.||+|++||+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 346889999999999999999999999999999974 467889999999999999986 4899999999999999999
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce--eeee-ecccceeEEEECC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL--LRNI-VFPSVIDAIALDP 228 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~~i~~~~~~~ 228 (451)
.+ .....+..+.+|...|.+++|+|+..+.+|++++.|+.|++||++++.. ...+ .|...|.+++|+|
T Consensus 85 ~~---------~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 85 EN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp SS---------SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred CC---------CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence 65 2223455677899999999999973338999999999999999987642 2223 3788999999999
Q ss_pred C-------------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C---CEEEEEcCCCc
Q 012996 229 A-------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G---DLLISGSEDGM 291 (451)
Q Consensus 229 ~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~---~~l~s~~~dg~ 291 (451)
+ +++|++|+.|+.|++||++..... ......+.+|...|.+++|+| + .+|++++.|++
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~ 230 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT 230 (297)
T ss_dssp CC------------CCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred CcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce-----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc
Confidence 7 579999999999999999875311 124567889999999999999 5 79999999999
Q ss_pred EEEEeCCCCc---eEEEe--ecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 292 VRVWDPITHN---IVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 292 i~iwd~~~~~---~~~~~--~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|++||+.+.. ....+ ..|...|.+++|+|++++||+++.||.+++|+..
T Consensus 231 v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999987743 12233 4678899999999999999999999999999965
No 52
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-41 Score=308.60 Aligned_cols=289 Identities=17% Similarity=0.193 Sum_probs=243.2
Q ss_pred CCCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeeee------cCCCCeeEEEECCC----CcEEEEec
Q 012996 34 SPPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKS------LPAEPIKPIAANSH----GTYIAGGG 99 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~~------~~~~~v~~~~~~~~----~~~l~~~~ 99 (451)
+|...|.+++ |+|+ ...+++++.+ +.|++|++.++...... .|...|.+++|+|+ +.+|++|+
T Consensus 16 ~h~~~v~~i~--~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 16 DHNQPLFGVQ--FNWHSKEGDPLVFATVGS-NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp TTCSCEEEEE--ECTTCCTTSCEEEEEEET-TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCCCceEEEE--EecccCCCCceEEEECCC-CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 5778899999 9984 4455566666 79999999866543221 15688999999998 77999999
Q ss_pred cCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc---cCCc
Q 012996 100 QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---TGHT 175 (451)
Q Consensus 100 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~~ 175 (451)
.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+++ ......+ ..|.
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-----------DTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-----------TEEEEEECSTTSCS
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-----------CeEEEEeccccccc
Confidence 999999999999999999999999999999999 999999999999999999955 2334444 6899
Q ss_pred CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----------------------------cccceeEEEE
Q 012996 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----------------------------FPSVIDAIAL 226 (451)
Q Consensus 176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------~~~~i~~~~~ 226 (451)
..|.+++|++++ .+|++++.||.|++||+++++....+. +...|.+++|
T Consensus 162 ~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 162 DEVLSADYDLLG--EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp SCEEEEEECTTS--SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred CceeEEEECCCC--CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 999999999988 899999999999999999876554332 7788999999
Q ss_pred CCCCCEEEEEeCCCcEEEEEccCCCCCCC-----CCCceeeeeeccCCcceeEEEEec---CCEEEEEcCCCcEEEEeCC
Q 012996 227 DPAEHVFYAGSRDGSIYIAALNAESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST---GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 227 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~s~~~dg~i~iwd~~ 298 (451)
+ ++++++++.||.|++||+........ ......+..+..|...|++++|+| +.+|++|+.||.|++||+.
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 8 77999999999999999987653111 112245777888999999999998 5899999999999999999
Q ss_pred CCce----EEEeecC--CCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 299 THNI----VRMFRLA--KGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 299 ~~~~----~~~~~~~--~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
++++ ...+..| ..+|++++|+|++++|++++.||.|++|++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 8764 4477777 7899999999999999999999999999974
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.6e-40 Score=303.91 Aligned_cols=285 Identities=12% Similarity=0.132 Sum_probs=240.9
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
|...|.+++ |+|+++++++++.+ +.|++||+.++. ......|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~i~~~~--~s~~~~~l~~~~~d-~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 7 LVEPISCHA--WNKDRTQIAICPNN-HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp CSSCCCEEE--ECTTSSEEEEECSS-SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred cCCCeEEEE--ECCCCCEEEEEeCC-CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 556788888 99999999999888 999999998874 334456889999999999999999999999999999988
Q ss_pred Ccceee--eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 112 GRLLKK--WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 112 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
++.... +..|...|.+++|+|++++|++++.||.|++||+..... ..........|...|.+++|++++
T Consensus 84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~-- 154 (372)
T 1k8k_C 84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-------WWVCKHIKKPIRSTVLSLDWHPNS-- 154 (372)
T ss_dssp TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT-------EEEEEEECTTCCSCEEEEEECTTS--
T ss_pred CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc-------ceeeeeeecccCCCeeEEEEcCCC--
Confidence 875444 367999999999999999999999999999999965210 001223346789999999999988
Q ss_pred eEEEEeeCCCcEEEEEcC------------------CCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 190 ATIVSASEDRTCKVWSLL------------------KGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.++++++.||.|++||++ .++.+..+. +...+.+++|+|++.+|++++.||.|++||+++.
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 899999999999999954 567777775 7889999999999999999999999999999886
Q ss_pred CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC--Cce-------------------------
Q 012996 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT--HNI------------------------- 302 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~--~~~------------------------- 302 (451)
..+..+..|..+|.+++|+| +.+|++| .||.|++|++.+ +..
T Consensus 235 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (372)
T 1k8k_C 235 ---------MAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQN 304 (372)
T ss_dssp ---------TEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHH
T ss_pred ---------ceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhh
Confidence 45677888999999999999 7777776 899999999987 421
Q ss_pred -------E------EEe-ecCCCCeeEEEEE-ecC---ceeeeccCCCCccccccCC
Q 012996 303 -------V------RMF-RLAKGPVNNILVV-RRP---LYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 303 -------~------~~~-~~~~~~v~~l~~s-~~~---~~l~~~s~d~~i~iw~~~~ 341 (451)
. ..+ .+|.++|++++|+ ++| .+|++++.||.|++|++..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 305 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 4899999999977 566 9999999999999999864
No 54
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.4e-39 Score=308.25 Aligned_cols=299 Identities=17% Similarity=0.250 Sum_probs=254.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~ 81 (451)
.+|++|+ .||+|++||+.+++.+..+.+ |...|.++. |+|++ .+++++.| |+|++||+.++...... .|..
T Consensus 133 ~~l~sgs-~dg~i~vwd~~~~~~~~~~~~---h~~~V~~l~--~~~~~-~l~s~s~d-g~i~vwd~~~~~~~~~~~~h~~ 204 (464)
T 3v7d_B 133 NYVITGA-DDKMIRVYDSINKKFLLQLSG---HDGGVWALK--YAHGG-ILVSGSTD-RTVRVWDIKKGCCTHVFEGHNS 204 (464)
T ss_dssp TEEEEEE-TTSCEEEEETTTTEEEEEECC---CSSCEEEEE--ECSTT-EEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEc-CCCcEEEEECCCCcEEEEEeC---CCcCEEEEE--EcCCC-EEEEEeCC-CCEEEEECCCCcEEEEECCCCC
Confidence 3689999 999999999999999988875 557788888 99888 88888888 99999999988766444 4889
Q ss_pred CeeEEEEC--CCCcEEEEeccCCCEEEEEcCCCcc-----------------------eeeeccccCCeeEEEEccCCcE
Q 012996 82 PIKPIAAN--SHGTYIAGGGQSGDIYMWEVASGRL-----------------------LKKWHAHYRAVTCLVFSEDGSF 136 (451)
Q Consensus 82 ~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~ 136 (451)
.|.+++|+ ++++++++|+.||.|++||+.++.. +..+.+|...|.++ ++++++
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 282 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNI 282 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCE
Confidence 99999998 5789999999999999999987653 44667888888887 567899
Q ss_pred EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (451)
Q Consensus 137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 216 (451)
+++|+.||.|++||+.+ ...+..+.+|...|.+++|++++ .++++++.||.|++||+++++.+..+.
T Consensus 283 l~~~~~d~~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~ 349 (464)
T 3v7d_B 283 VVSGSYDNTLIVWDVAQ-----------MKCLYILSGHTDRIYSTIYDHER--KRCISASMDTTIRIWDLENGELMYTLQ 349 (464)
T ss_dssp EEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEeCCCeEEEEECCC-----------CcEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence 99999999999999954 45677788999999999999988 899999999999999999999998887
Q ss_pred -cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 217 -FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 217 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
|...|.+++|+ +.+|++++.||.|++||+.+.. . .... .|...+..++|++ +.++++|+ ||.|++
T Consensus 350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~--------~-~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~i 416 (464)
T 3v7d_B 350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS--------R-KFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNI 416 (464)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC--------E-EEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEE
T ss_pred CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCc--------e-eeee-cCCCCccEEEEEeCCCEEEEec-CCeEEE
Confidence 88899999997 5899999999999999998753 1 2222 3667888899999 89999988 999999
Q ss_pred EeCCCCceEEE-eecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 295 WDPITHNIVRM-FRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 295 wd~~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
||+.+++++.. +..|.++|.+++|+ ...++++++.||.+.+|-
T Consensus 417 wd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 417 YNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999999986 66788999999997 445556666777666554
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-40 Score=311.27 Aligned_cols=285 Identities=13% Similarity=0.110 Sum_probs=224.1
Q ss_pred CCCCceEEecceEeec-cCcccCCCCCCccEEEEECCCCceee---eecCCCCeeEEEECC-CCcEEEEeccCCCEEEEE
Q 012996 34 SPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSKPQVEV---KSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~~~~~~---~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 108 (451)
.+...|++++ |+|. +.+||+|+.| |.|+|||+.++.... ...|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus 117 ~~~~~V~~l~--~~P~~~~~lasGs~d-g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 117 PFDRRATSLA--WHPTHPSTVAVGSKG-GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp ECSSCEEEEE--ECSSCTTCEEEEETT-SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3557799999 9995 5678888887 999999998665432 235889999999998 789999999999999999
Q ss_pred cCCCcceeeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 109 VASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 109 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
++++....... .+...+.+++|+|++++|++|+.||.|++||++. ..+..+.+|...|.+++|+|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~------------~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG------------KELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS------------CBCCCSBCCSSCEEEEEECTT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc------------ceeEEEecccceEEeeeecCC
Confidence 97665433333 3345678999999999999999999999999843 245677899999999999998
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeee----ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNI----VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
+. .++++++.|+.|++||+++.+....+ .|...|.+++|+|++.+|++++.||.|++||+.+... .
T Consensus 262 ~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~---------~ 331 (435)
T 4e54_B 262 CD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC---------P 331 (435)
T ss_dssp CS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS---------E
T ss_pred Cc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc---------c
Confidence 74 58899999999999999887654433 3788999999999999999999999999999987642 2
Q ss_pred eeeccCCc------ceeEEEEec-CCEEEEEc------------CCCcEEEEeCCCCceEEEee-cCCCCeeEE-EEEec
Q 012996 263 GSLSDHSK------AVTCLAYST-GDLLISGS------------EDGMVRVWDPITHNIVRMFR-LAKGPVNNI-LVVRR 321 (451)
Q Consensus 263 ~~~~~~~~------~v~~~~~~~-~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~-~~~~~v~~l-~~s~~ 321 (451)
..+..|.. .+....|+| +.++++++ .++.|++||..+++.+..+. +|...|.++ +|+|+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 22222221 223345666 55555543 34679999999999998865 677889887 69999
Q ss_pred CceeeeccCCCCccccccCCCCC
Q 012996 322 PLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 322 ~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
|.+|++|+ |+.|++|+...++.
T Consensus 412 g~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 412 GDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp SSCEEEEC-SSEEEECCCC----
T ss_pred CCEEEEEc-CCcEEEEECCcCee
Confidence 99999886 78999999886543
No 56
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-41 Score=313.98 Aligned_cols=303 Identities=12% Similarity=0.095 Sum_probs=245.0
Q ss_pred EEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCC---Cc---eeeeecCCCCeeEEEEC
Q 012996 17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSK---PQ---VEVKSLPAEPIKPIAAN 89 (451)
Q Consensus 17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~---~~---~~~~~~~~~~v~~~~~~ 89 (451)
.|+ .+++.+..+. .+|...|.+++ |+| +++++++++.| |+|++||+.+ +. ......|...|.+++|+
T Consensus 47 ~w~-~~g~~~~~~~--~~h~~~V~~~~--~s~~~~~~l~s~s~d-g~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 120 (437)
T 3gre_A 47 MGN-LRGKLIATLM--ENEPNSITSSA--VSPGETPYLITGSDQ-GVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMI 120 (437)
T ss_dssp GGG-CCCCEEEEEC--TTTTSCEEEEE--EECSSSCEEEEEETT-SEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEEC
T ss_pred ccc-ccceEEeeec--cCCCCceEEEE--ECCCCCCEEEEecCC-ceEEEeECcccccCcccceeeeccCCCCEEEEEEe
Confidence 587 5678877772 23668899999 999 99999999998 9999999865 32 23344588999999999
Q ss_pred CCCcEEEEeccCCCEEEEEcC---CCcceeeecc------------ccCCeeEEE--EccCCcEEEEeeCCCcEEEeeCc
Q 012996 90 SHGTYIAGGGQSGDIYMWEVA---SGRLLKKWHA------------HYRAVTCLV--FSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
|++++|++|+.||.|++||+. +++.+..+.. +...+.++. +++++.+|++|+.||.|++||++
T Consensus 121 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~ 200 (437)
T 3gre_A 121 PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR 200 (437)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT
T ss_pred CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 999999999999999999994 5554443322 456677776 55789999999999999999995
Q ss_pred chhhhhhhhcccccceecccC--CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC
Q 012996 153 TVFEECESQRASHLYLHSFTG--HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP 228 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~ 228 (451)
+ ...+..+.. |...|++++|++++ .+|++|+.||.|++||+++++.+..+. +...|.+++|+|
T Consensus 201 ~-----------~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 201 T-----------LERLQIIENSPRHGAVSSICIDEEC--CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp T-----------CCEEEEEECCGGGCCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred C-----------CeeeEEEccCCCCCceEEEEECCCC--CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 4 445666666 89999999999987 899999999999999999999988774 677899996654
Q ss_pred ----CCCEEEEEeCCCcEEEEEccCCCCCCCCC---------Cceee------eeecc--CCcceeEEEEecCCEEEEEc
Q 012996 229 ----AEHVFYAGSRDGSIYIAALNAESPSTSSY---------GMHII------GSLSD--HSKAVTCLAYSTGDLLISGS 287 (451)
Q Consensus 229 ----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~------~~~~~--~~~~v~~~~~~~~~~l~s~~ 287 (451)
++.+|++|+.||.|++||+++........ .+.+. ..+.+ |...|++++|+++.+|++|+
T Consensus 268 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~ 347 (437)
T 3gre_A 268 FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDE 347 (437)
T ss_dssp TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEG
T ss_pred ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecC
Confidence 68899999999999999998754210000 00000 01233 77889999999888999999
Q ss_pred CCCcEEEEeCCCCceEEEeec-------------------------------------CCCCeeEEEEEec--Cceeeec
Q 012996 288 EDGMVRVWDPITHNIVRMFRL-------------------------------------AKGPVNNILVVRR--PLYLNLG 328 (451)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~-------------------------------------~~~~v~~l~~s~~--~~~l~~~ 328 (451)
.||.|++||+.+++++..+.+ |.+.|++++|+++ +.+|++|
T Consensus 348 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 348 ATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp GGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred CCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 999999999999988877765 7889999999998 8899999
Q ss_pred cCCCCccccc
Q 012996 329 SFSNPHTSSR 338 (451)
Q Consensus 329 s~d~~i~iw~ 338 (451)
+.||.|++|+
T Consensus 428 ~~dG~I~iw~ 437 (437)
T 3gre_A 428 DNSGLIGIFQ 437 (437)
T ss_dssp ETTSCEEEEC
T ss_pred cCCceEEEeC
Confidence 9999999995
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.8e-39 Score=288.09 Aligned_cols=267 Identities=24% Similarity=0.372 Sum_probs=231.5
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||+++ .||.|++||+.+++....+.. |...|.+++ |+|+++++++++.| |.|++||+.++..... ..|..
T Consensus 36 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-~~i~vwd~~~~~~~~~~~~~~~ 108 (312)
T 4ery_A 36 EWLASSS-ADKLIKIWGAYDGKFEKTISG---HKLGISDVA--WSSDSNLLVSASDD-KTLKIWDVSSGKCLKTLKGHSN 108 (312)
T ss_dssp SEEEEEE-TTSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEee-CCCeEEEEeCCCcccchhhcc---CCCceEEEE--EcCCCCEEEEECCC-CEEEEEECCCCcEEEEEcCCCC
Confidence 3688999 999999999999998887765 456788888 99999999999998 9999999998776543 45888
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 161 (451)
.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++||+++
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~-------- 180 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-------- 180 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999955
Q ss_pred cccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccc---eeEEEECCCCCEEEEE
Q 012996 162 RASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV---IDAIALDPAEHVFYAG 236 (451)
Q Consensus 162 ~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~---i~~~~~~~~~~~l~~~ 236 (451)
...+.. ...+...+..++|+|++ .++++++.|+.|++||+++++.+..+. +... +......+++.+|++|
T Consensus 181 ---~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 181 ---GQCLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSG 255 (312)
T ss_dssp ---CCEEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEEC
T ss_pred ---CceeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEE
Confidence 222333 34567789999999998 899999999999999999999888776 3322 3333445688999999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCC
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPI 298 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~ 298 (451)
+.||.|++||+.+. ..+..+.+|...|.+++|+| +.+|++++ .|++|++|+..
T Consensus 256 ~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCc---------hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999876 55778899999999999999 99999986 69999999864
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2e-39 Score=299.78 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=224.7
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCC---------------CCCceEEecceEeeccCcccCCCCCCccEEEEEC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSW 68 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~ 68 (451)
+||+|+ +++++||++.+++.+..+..+.. +...|.+++ |+|+|+++++++.| +.|++||+
T Consensus 78 ~la~g~--~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~--~s~dg~~l~s~~~d-~~i~iwd~ 152 (393)
T 1erj_A 78 YLATGC--NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC--FSPDGKFLATGAED-RLIRIWDI 152 (393)
T ss_dssp EEEEEC--BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEE--ECTTSSEEEEEETT-SCEEEEET
T ss_pred EEEEEc--CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEE--ECCCCCEEEEEcCC-CeEEEEEC
Confidence 577766 68999999999999888765432 223478888 99999999999998 99999999
Q ss_pred CCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcE
Q 012996 69 SKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCV 146 (451)
Q Consensus 69 ~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i 146 (451)
.+++.... ..|...|.+++|+|++.+|++|+.|+.|++||+.+++....+. +...+.+++|+| ++++|++|+.||.|
T Consensus 153 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v 231 (393)
T 1erj_A 153 ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAV 231 (393)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCE
T ss_pred CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcE
Confidence 98876543 4588999999999999999999999999999999998877775 567899999999 89999999999999
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc------------eeee
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR------------LLRN 214 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~ 214 (451)
++||++++...... ........+|...|.+++|++++ .+|++++.|+.|++||+++.. +...
T Consensus 232 ~iwd~~~~~~~~~~----~~~~~~~~~h~~~v~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~ 305 (393)
T 1erj_A 232 RVWDSETGFLVERL----DSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305 (393)
T ss_dssp EEEETTTCCEEEEE----C------CCCSSCEEEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEE
T ss_pred EEEECCCCcEEEee----cccccCCCCCCCCEEEEEECCCC--CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEE
Confidence 99999653210000 00011226799999999999998 899999999999999997643 2233
Q ss_pred ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-------CCEEEEE
Q 012996 215 IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-------GDLLISG 286 (451)
Q Consensus 215 ~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~l~s~ 286 (451)
+. |...|.+++|+|++.+|++|+.|+.|++||..++ .++..+.+|...|.+++|++ +.+|++|
T Consensus 306 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred EecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence 33 7788999999999999999999999999999886 45678889999999999875 5789999
Q ss_pred cCCCcEEEEeCCC
Q 012996 287 SEDGMVRVWDPIT 299 (451)
Q Consensus 287 ~~dg~i~iwd~~~ 299 (451)
+.||+|++|++..
T Consensus 377 s~Dg~i~iW~~~~ 389 (393)
T 1erj_A 377 SGDCKARIWKYKK 389 (393)
T ss_dssp ETTSEEEEEEEEE
T ss_pred CCCCcEEECcccc
Confidence 9999999999754
No 59
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-41 Score=309.47 Aligned_cols=285 Identities=10% Similarity=0.049 Sum_probs=225.3
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCC--cee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--QVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
...|.+++ |+|+++++++++.| +.|++||+.++ ... ....|...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 11 ~~~v~~~~--~s~~g~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 11 PKPSYEHA--FNSQRTEFVTTTAT-NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp SSCCSCCE--ECSSSSEEECCCSS-SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred CCcEEEEE--ECCCCCEEEEecCC-CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 35677777 99999999999888 99999999876 332 33458899999999999999999999999999999988
Q ss_pred c---ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCC
Q 012996 113 R---LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGV 188 (451)
Q Consensus 113 ~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~ 188 (451)
. ....+..|...|.+++|+|++++|++++.|+.|++||+++.. .......+.. |...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~~~~~~~~- 158 (377)
T 3dwl_C 88 GTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN--------DWWVSKHLKRPLRSTILSLDWHPNN- 158 (377)
T ss_dssp -CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------------CCCCEEECSSCCSCEEEEEECTTS-
T ss_pred CceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc--------cceeeeEeecccCCCeEEEEEcCCC-
Confidence 7 667778899999999999999999999999999999996521 1223455666 99999999999988
Q ss_pred eeEEEEeeCCCcEEEEEcC------------------CCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 189 SATIVSASEDRTCKVWSLL------------------KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.+|++++.|+.|++||+. .++.+..+.|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 159 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 159 -VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp -SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred -CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 899999999999999985 2445555567888999999999999999999999999999987
Q ss_pred CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc--e-------------------------
Q 012996 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN--I------------------------- 302 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~--~------------------------- 302 (451)
... ...+..+.+|...|.+++|+| +.+|++|+.|+.+ +|+..... .
T Consensus 238 ~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (377)
T 3dwl_C 238 EQP-----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREE 311 (377)
T ss_dssp TSC-----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC
T ss_pred CCc-----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccc
Confidence 421 122667889999999999999 8899888877666 66554111 0
Q ss_pred E---------EEe----------------ecCCCCeeEEEEEecCc----eeeeccCCCCcccccc
Q 012996 303 V---------RMF----------------RLAKGPVNNILVVRRPL----YLNLGSFSNPHTSSRR 339 (451)
Q Consensus 303 ~---------~~~----------------~~~~~~v~~l~~s~~~~----~l~~~s~d~~i~iw~~ 339 (451)
. ..+ ..|.+.|+++++.+... .|+|++.||.|++|++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 312 EGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0 011 12899999999877553 5999999999999984
No 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=334.26 Aligned_cols=318 Identities=13% Similarity=0.133 Sum_probs=242.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.+||+|+ .||+|+|||..+++....+. +...|.+++ |+| |++|++++.| ++|++||+.+++......+...
T Consensus 30 ~~lAsgs-~Dg~I~lw~~~~~~~~~~~~----~~~~V~~l~--fsp-g~~L~S~s~D-~~v~lWd~~~~~~~~~~~~~~~ 100 (902)
T 2oaj_A 30 NLLAIAT-VTGEVHIYGQQQVEVVIKLE----DRSAIKEMR--FVK-GIYLVVINAK-DTVYVLSLYSQKVLTTVFVPGK 100 (902)
T ss_dssp TEEEEEE-TTSEEEEECSTTCEEEEECS----SCCCEEEEE--EET-TTEEEEEETT-CEEEEEETTTCSEEEEEECSSC
T ss_pred CEEEEEe-CCCEEEEEeCCCcEEEEEcC----CCCCEEEEE--EcC-CCEEEEEECc-CeEEEEECCCCcEEEEEcCCCC
Confidence 3789999 99999999998877665442 456799999 999 8889999888 9999999998887666567789
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEee
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWS 150 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd 150 (451)
|++++|+|++++|++|+.||.|++||+.++.+. ..+.+|.++|.+++|+|+ +..|++|+.||.| +||
T Consensus 101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd 179 (902)
T 2oaj_A 101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYS 179 (902)
T ss_dssp EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEE
Confidence 999999999999999999999999999888753 334679999999999995 5789999999999 999
Q ss_pred Ccchhhhhhhhcccccceecc------------------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee
Q 012996 151 LLTVFEECESQRASHLYLHSF------------------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL 212 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 212 (451)
+++.. .+..+ ..|...|.+++|+|++ .+|++++.||.|++||+++++++
T Consensus 180 ~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg--~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 180 LVENE-----------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS--LHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp TTTTE-----------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS--SEEEEEETTCCEEEEETTTCCEE
T ss_pred CCCCc-----------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCcEE
Confidence 96532 22222 3356789999999998 89999999999999999998876
Q ss_pred ee--ee-----------------cccceeEEEEC----CCC-CEEEEEeCC-----CcEEEEEcc---------------
Q 012996 213 RN--IV-----------------FPSVIDAIALD----PAE-HVFYAGSRD-----GSIYIAALN--------------- 248 (451)
Q Consensus 213 ~~--~~-----------------~~~~i~~~~~~----~~~-~~l~~~~~d-----g~i~i~d~~--------------- 248 (451)
.. +. +...|.+++|+ |++ .+|++|+.+ ..+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 53 21 13468999994 443 456666554 256666631
Q ss_pred --------------------------------------------------------CCCCCCCC-----------CC---
Q 012996 249 --------------------------------------------------------AESPSTSS-----------YG--- 258 (451)
Q Consensus 249 --------------------------------------------------------~~~~~~~~-----------~~--- 258 (451)
++...... ..
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~ 406 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATT 406 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEE
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeE
Confidence 11000000 00
Q ss_pred ------------------ceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE----EE--ee-----c
Q 012996 259 ------------------MHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV----RM--FR-----L 308 (451)
Q Consensus 259 ------------------~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~----~~--~~-----~ 308 (451)
......+.+|...+.+++|+| +++|++|+.||+|++||+.++... .. +. +
T Consensus 407 ~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~ 486 (902)
T 2oaj_A 407 SMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA 486 (902)
T ss_dssp EEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred EEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence 000001233444455556678 899999999999999999887431 11 11 7
Q ss_pred CCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
|...|++++|+||+++||+|+.||+|++|++.+.+
T Consensus 487 h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 487 KELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred CCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 88899999999999999999999999999998764
No 61
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-39 Score=301.53 Aligned_cols=276 Identities=15% Similarity=0.215 Sum_probs=235.7
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeee--cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 123 (451)
+.+++..+++++.+ |.|++|++.++...... .|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|..
T Consensus 99 ~~~s~~~l~~~~~d-~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 177 (401)
T 4aez_A 99 LDWSNLNVVAVALE-RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQA 177 (401)
T ss_dssp EEECTTSEEEEEET-TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred EeecCCCEEEEECC-CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCC
Confidence 45556778888877 99999999988765443 3688999999999999999999999999999999999999999999
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
.|.+++|+ +.+|++++.||.|++||++. .......+.+|...|.+++|++++ .+|++++.|+.|++
T Consensus 178 ~v~~~~~~--~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~d~~v~i 243 (401)
T 4aez_A 178 RVGCLSWN--RHVLSSGSRSGAIHHHDVRI----------ANHQIGTLQGHSSEVCGLAWRSDG--LQLASGGNDNVVQI 243 (401)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEETTSCEEE
T ss_pred ceEEEEEC--CCEEEEEcCCCCEEEEeccc----------CcceeeEEcCCCCCeeEEEEcCCC--CEEEEEeCCCeEEE
Confidence 99999995 67999999999999999953 234567788899999999999987 89999999999999
Q ss_pred EEcCCCceeeeee-cccceeEEEECCCCC-EEEEEe--CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 204 WSLLKGRLLRNIV-FPSVIDAIALDPAEH-VFYAGS--RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
||+++++....+. +...|.+++|+|++. ++++|+ .|+.|++||+.+.. .+..+ .+...|.+++|+|
T Consensus 244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---------~~~~~-~~~~~v~~~~~s~ 313 (401)
T 4aez_A 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---------RVNTV-DAGSQVTSLIWSP 313 (401)
T ss_dssp EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---------EEEEE-ECSSCEEEEEECS
T ss_pred ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---------EEEEE-eCCCcEEEEEECC
Confidence 9999998888776 888999999999765 555554 79999999998763 34444 3668899999999
Q ss_pred -CCEEEE--EcCCCcEEEEeCCCCceEE--EeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCC
Q 012996 280 -GDLLIS--GSEDGMVRVWDPITHNIVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPP 346 (451)
Q Consensus 280 -~~~l~s--~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~ 346 (451)
+.+|++ |+.||.|++||+.++.... .+.+|.+.|.+++|+|++.+|++++.||.+++|++.......
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999998 5589999999999865554 467899999999999999999999999999999998765443
No 62
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.3e-39 Score=302.31 Aligned_cols=275 Identities=19% Similarity=0.276 Sum_probs=232.6
Q ss_pred EEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 116 (451)
..++ |+++ +.||+|. | ++|+|||..+++.... ..|...|++|+|+|+|++|++|+.||.|+|||+.+++.+.
T Consensus 109 ~~l~--wS~~-n~lAvgl-d-~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 109 NLVD--WSSG-NVLAVAL-D-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp BCEE--ECTT-SEEEEEE-T-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eeEE--ECCC-CEEEEEe-C-CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 3455 8865 4666654 5 9999999999876543 2467789999999999999999999999999999999999
Q ss_pred eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
.+.+|...+.++.++ +.+|++|+.|+.+++||... ....+..+.+|...+..+.+++++ .++++++
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~----------~~~~~~~~~~h~~~~~~~~~~~~g--~~l~s~~ 249 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASGG 249 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEE
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecc----------cceeeEEecccccceeeeeecCCC--Ceeeeee
Confidence 999999999998876 67999999999999999854 344567788999999999999998 8999999
Q ss_pred CCCcEEEEEcCCCcee----ee-eecccceeEEEECCCC-CEEEE--EeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 197 EDRTCKVWSLLKGRLL----RN-IVFPSVIDAIALDPAE-HVFYA--GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 197 ~d~~i~iwd~~~~~~~----~~-~~~~~~i~~~~~~~~~-~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
.|+.+++|+..+++.. .. ..+...|.+++|+|.+ ..+++ |+.|+.|++||+.++ .....+..
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~~- 319 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVDA- 319 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEEC-
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---------ccceeecc-
Confidence 9999999999876532 22 2377899999999965 45554 457999999999886 44445544
Q ss_pred CcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 269 SKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 269 ~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
...+.++.|+| +..+++++ .||.|+|||+.+++++.++.+|.++|++++|+|+|++|+||+.|++|++|++....
T Consensus 320 ~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 320 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 46789999999 88777654 79999999999999999999999999999999999999999999999999987543
No 63
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=305.63 Aligned_cols=313 Identities=10% Similarity=0.105 Sum_probs=252.1
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeee-------------
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKS------------- 77 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~------------- 77 (451)
++.+++|++.+++....+.. |...|.+++ |+| +++++++++.| |.|++||+.+.......
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~---h~~~v~~~~--~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 95 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERI---HGGGINTLD--IEPVEGRYMLSGGSD-GVIVLYDLENSSRQSYYTCKAVCSIGRDHP 95 (408)
T ss_dssp HHHHHHHTEEECTTEEECCC---CSSCEEEEE--ECTTTCCEEEEEETT-SCEEEEECCCCSSSSCEEECEEEEECTTCT
T ss_pred cCcceeeccccCcceeeeec---cCCcEEEEE--EecCCCCEEEEEcCC-CeEEEEECCCCcccceEecccccccccccc
Confidence 45688999888888776665 567899999 999 99999999998 99999999876644332
Q ss_pred -cCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC---CcEEEEeeCCCcEEEeeCc
Q 012996 78 -LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 78 -~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~ 152 (451)
.|...|.+++|+| ++.+|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 3888999999999 78899999999999999999998887776 7788999999984 4599999999999999995
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeee----------------
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNI---------------- 215 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~---------------- 215 (451)
+ ...+..+..|...|.+++|+|++. .++++++.||.|++||++++. .+..+
T Consensus 175 ~-----------~~~~~~~~~~~~~v~~~~~~~~~~-~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (408)
T 4a11_B 175 S-----------GSCSHILQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT 242 (408)
T ss_dssp S-----------SCCCEEECCCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred C-----------cceeeeecCCCCcEEEEEECCCCC-cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc
Confidence 4 345667788999999999999873 369999999999999998765 22222
Q ss_pred ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
.+...|.+++|+|++.+|++++.||.|++||+.+.......... ........+....... +..+++++.|+.|++
T Consensus 243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 318 (408)
T 4a11_B 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGK----VCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAV 318 (408)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCC----CCCCCSSCCCCEECCSSSSCEEEEEETTEEEE
T ss_pred cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccc----ccccccccceeEEecCCCceEEEEecCCEEEE
Confidence 36778999999999999999999999999999987532211100 0011111222222223 677888889999999
Q ss_pred EeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCCCc
Q 012996 295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~~~ 347 (451)
||+.+++++..+.+|.++|++++|+|++++|++++.||.+++|++...++.+.
T Consensus 319 ~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 319 YTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------
T ss_pred EECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 99999999999999999999999999999999999999999999987665443
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.7e-39 Score=292.68 Aligned_cols=291 Identities=14% Similarity=0.140 Sum_probs=241.0
Q ss_pred CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEE
Q 012996 32 CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYM 106 (451)
Q Consensus 32 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 106 (451)
..+|...|.+++ |+|+++++++++.| |.|++|++.++. ......|...|.+++|+|+++ +|++|+.||.|++
T Consensus 7 ~~~h~~~v~~~~--~s~~~~~l~~~~~d-~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~ 83 (342)
T 1yfq_A 7 EQAPKDYISDIK--IIPSKSLLLITSWD-GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp SSCCSSCEEEEE--EEGGGTEEEEEETT-SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred ccCCCCcEEEEE--EcCCCCEEEEEcCC-CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence 346778899999 99999999999988 999999998777 555567889999999999999 9999999999999
Q ss_pred EEc-CCCcceeeecc--ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 107 WEV-ASGRLLKKWHA--HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 107 wd~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
||+ .+++. ..+.+ |...|.+++|+| +.+|++++.||.|++||+++...... .....++..+. |...|.+++|
T Consensus 84 wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 84 VDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVI--AVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp ECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCE--EEEESCSSSSS-SCCCEEEEEE
T ss_pred EEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccc--cccCCeeeEEe-eCCceEEEEe
Confidence 999 77654 67778 999999999999 99999999999999999853110000 00022344444 8899999999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCC-Ccee---eeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLK-GRLL---RNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~---~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (451)
+++ .+++++.|+.|++||+++ +... ....+...+.+++|+| ++.++++++.||.|++|+++...... .
T Consensus 159 ~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---~ 231 (342)
T 1yfq_A 159 NSS----RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---N 231 (342)
T ss_dssp CSS----EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST---T
T ss_pred cCC----cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc---c
Confidence 865 399999999999999988 5432 2223678899999999 99999999999999999998751000 0
Q ss_pred ceeeeeeccCCc---------ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecCceeee
Q 012996 259 MHIIGSLSDHSK---------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 259 ~~~~~~~~~~~~---------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~ 327 (451)
......+..|.. .|++++|+| +.+|++++.||.|++||+.+++++..+..| .++|++++ |++++|++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 023445555644 999999999 999999999999999999999999999998 99999999 99999999
Q ss_pred ccCCCC-cccccc
Q 012996 328 GSFSNP-HTSSRR 339 (451)
Q Consensus 328 ~s~d~~-i~iw~~ 339 (451)
++.||. .+.|..
T Consensus 310 ~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 310 ATSDDTFKTNAAI 322 (342)
T ss_dssp EEECTHHHHCSSS
T ss_pred EecCCcccccccc
Confidence 999999 777775
No 65
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-39 Score=298.39 Aligned_cols=276 Identities=15% Similarity=0.234 Sum_probs=235.9
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCe
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPI 83 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v 83 (451)
+++++ .||.|++||+.+++....+... +...|.+++ |+|+++++++++.+ |.|++||+.++..... ..|...|
T Consensus 106 l~~~~-~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~--~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v 179 (401)
T 4aez_A 106 VVAVA-LERNVYVWNADSGSVSALAETD--ESTYVASVK--WSHDGSFLSVGLGN-GLVDIYDVESQTKLRTMAGHQARV 179 (401)
T ss_dssp EEEEE-ETTEEEEEETTTCCEEEEEECC--TTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTCCEEEEECCCSSCE
T ss_pred EEEEE-CCCeEEEeeCCCCcEeEeeecC--CCCCEEEEE--ECCCCCEEEEECCC-CeEEEEECcCCeEEEEecCCCCce
Confidence 56677 7999999999999988777653 567899999 99999999999988 9999999988776544 4688999
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
.+++| ++++|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+|++++|++|+.||.|++||+++
T Consensus 180 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------- 248 (401)
T 4aez_A 180 GCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------- 248 (401)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---------
T ss_pred EEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---------
Confidence 99999 46799999999999999998 4567788899999999999999999999999999999999954
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEE--EeC
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA--GSR 238 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~ 238 (451)
......+..|...|.+++|+|++. .++++++ .|+.|++||+.+++.+..+.+...+.+++|+|++.++++ |+.
T Consensus 249 --~~~~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~ 325 (401)
T 4aez_A 249 --SIPKFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325 (401)
T ss_dssp --SSEEEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTT
T ss_pred --CCccEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecC
Confidence 445667788999999999999764 5777765 799999999999999999999999999999999999999 448
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
||.|++||+.+.. ......+.+|...|.+++|+| +.+|++++.||.|++||+.+++.+....
T Consensus 326 dg~i~v~~~~~~~-------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 326 DNNLSIWSYSSSG-------LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TCEEEEEEEETTE-------EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCcEEEEecCCcc-------ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999998753 234455778999999999999 9999999999999999999998776543
No 66
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.3e-39 Score=298.21 Aligned_cols=293 Identities=18% Similarity=0.282 Sum_probs=238.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
++||+|. |++|+|||..+|+....+..+ +|...|.+++ |+|+|++||+|+.| |.|++||+.+++.... ..|..
T Consensus 117 n~lAvgl--d~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~--fspdg~~lasgs~D-g~v~iWd~~~~~~~~~~~~h~~ 190 (420)
T 4gga_A 117 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA 190 (420)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SCEEEEETTTTEEEEEECCCSS
T ss_pred CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCcEEEEE--ECCCCCEEEEEECC-CeEEEEEcCCCcEEEEEeCCCC
Confidence 4677766 899999999999988877644 4667899999 99999999999998 9999999998876544 45778
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
.+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+..++.
T Consensus 191 ~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~----- 263 (420)
T 4gga_A 191 RVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE----- 263 (420)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS-----
T ss_pred ceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc-----
Confidence 88888774 789999999999999998765 4567788999999999999999999999999999999996532
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEE--eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS--ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS- 237 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 237 (451)
.....+.....|...|.+++|+|.+. .++++ |+.|++|++||+.+++....+.....+.++.|+|+++.+++++
T Consensus 264 --~~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 264 --GGWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp --SCSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred --ccceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 12234566778999999999999765 45554 4579999999999999999999889999999999999988765
Q ss_pred -CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996 238 -RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (451)
Q Consensus 238 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (451)
.|+.|++||+.+. .++..+.+|...|++++|+| +.+|+||+.||+|+|||+....+.+....+...+..
T Consensus 341 ~~d~~I~iwd~~~~---------~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 341 FAQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp TTTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred cCCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 7899999999876 56788999999999999999 999999999999999999888777777666655554
Q ss_pred EEEEe
Q 012996 316 ILVVR 320 (451)
Q Consensus 316 l~~s~ 320 (451)
..|..
T Consensus 412 ~s~~~ 416 (420)
T 4gga_A 412 SSLIH 416 (420)
T ss_dssp -----
T ss_pred cccCC
Confidence 44443
No 67
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=8.4e-39 Score=287.27 Aligned_cols=274 Identities=19% Similarity=0.248 Sum_probs=231.1
Q ss_pred EEecceEeeccCcccCCCCCCccEEEEECCCCceeee---ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 116 (451)
.+++ ||+++ .||++ .| ++|+|||+.+++.... ..|...|.+++|+|++++|++|+.||.|++||+.+++.+.
T Consensus 29 ~~l~--WS~~~-~lAvg-~D-~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~ 103 (318)
T 4ggc_A 29 NLVD--WSSGN-VLAVA-LD-NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103 (318)
T ss_dssp BCEE--ECTTS-EEEEE-ET-TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eEEE--ECCCC-EEEEE-eC-CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE
Confidence 4566 99876 66655 45 9999999998876543 2467789999999999999999999999999999999999
Q ss_pred eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee
Q 012996 117 KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
.+.+|...+.++.+. +..+++++.++.+++|+... ....+..+.+|...+..+.+.+++ .++++++
T Consensus 104 ~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~--~~l~s~~ 169 (318)
T 4ggc_A 104 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRV----------AEHHVATLSGHSQEVCGLRWAPDG--RHLASGG 169 (318)
T ss_dssp EEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTS----------SSCEEEEEECCSSCEEEEEECTTS--SEEEEEE
T ss_pred EecCccceEEEeecC--CCEEEEEecCCceEeeecCC----------CceeEEEEcCccCceEEEEEcCCC--CEEEEEe
Confidence 999999988776654 67999999999999999854 344567788999999999999988 8999999
Q ss_pred CCCcEEEEEcCCCceeee-----eecccceeEEEECCCCCEE---EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 197 EDRTCKVWSLLKGRLLRN-----IVFPSVIDAIALDPAEHVF---YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 197 ~d~~i~iwd~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
.|+.|++||+++++.... ..+...+.+++++|.+..+ ++++.++.|++||..... ......+
T Consensus 170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~~ 239 (318)
T 4ggc_A 170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVDA 239 (318)
T ss_dssp TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEEC
T ss_pred cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------ccccccc
Confidence 999999999988764322 2266789999999966543 356788999999998753 2234457
Q ss_pred CcceeEEEEec-CCEEEEE--cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 269 SKAVTCLAYST-GDLLISG--SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 269 ~~~v~~~~~~~-~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
...+..+.|+| +..++++ +.||.|++||+.+++++.++.+|.++|++++|+|++++|++||.||+|++|++...
T Consensus 240 ~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 240 HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 78899999999 7777665 47999999999999999999999999999999999999999999999999998653
No 68
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.8e-39 Score=315.43 Aligned_cols=300 Identities=17% Similarity=0.235 Sum_probs=259.6
Q ss_pred EEeecCCCCCCeEEEECccC----ceeeeeecCCCCCCc-eEEecceEee--ccCcccCCCCCCccEEEEECCCC-----
Q 012996 4 LIASSSVADTGIGCWDLESG----AEQLRYKSCASPPHG-LACVGQRFLA--SSQLREQPSASSGSILYWSWSKP----- 71 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~-v~~~~~~~~~--~~~~l~~~~~d~g~i~vw~~~~~----- 71 (451)
+||+++ ++.|+|||+.++ +....+.+ |... |.+++ |+| +++++++++.| |.|++||+.++
T Consensus 32 ~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~---h~~~~v~~~~--~sp~~~~~~l~s~~~d-g~v~vw~~~~~~~~~~ 103 (615)
T 1pgu_A 32 AIAYPC--GKSAFVRCLDDGDSKVPPVVQFTG---HGSSVVTTVK--FSPIKGSQYLCSGDES-GKVIVWGWTFDKESNS 103 (615)
T ss_dssp EEEEEE--TTEEEEEECCSSCCSSCSEEEECT---TTTSCEEEEE--ECSSTTCCEEEEEETT-SEEEEEEEEEEGGGTE
T ss_pred EEEEec--CCeEEEEECCCCCCccccceEEec---CCCceEEEEE--ECcCCCCCEEEEecCC-CEEEEEeCCCCccccc
Confidence 566666 789999999998 78777765 4567 89999 999 99999999998 99999999644
Q ss_pred ---cee-eeecCCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeC
Q 012996 72 ---QVE-VKSLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSE 142 (451)
Q Consensus 72 ---~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~ 142 (451)
... ....|..+|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|+++ .+++++.
T Consensus 104 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 181 (615)
T 1pgu_A 104 VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 181 (615)
T ss_dssp EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEET
T ss_pred ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeC
Confidence 222 234478899999999999999999887 6788887 6778889999999999999999997 8999999
Q ss_pred CCcEEEeeCcchhhhhhhhcccccceecccCCcC---ceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCceeeee---
Q 012996 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL---RITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNI--- 215 (451)
Q Consensus 143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--- 215 (451)
||.|++||+.+ ...+..+.+|.. .|.+++|+|+ + .++++++.||.|++||+.+++.+..+
T Consensus 182 d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 248 (615)
T 1pgu_A 182 DGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDD 248 (615)
T ss_dssp TTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred CCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEeccc
Confidence 99999999843 456677888998 9999999998 7 89999999999999999999999888
Q ss_pred --ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC----CcceeEEEEecCCEEEEEcCC
Q 012996 216 --VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSED 289 (451)
Q Consensus 216 --~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~s~~~d 289 (451)
.|...|.+++|+ ++.+|++++.||.|++||+.+. ..+..+..+ ...+.++.|+.+.++++++.|
T Consensus 249 ~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 318 (615)
T 1pgu_A 249 QEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---------KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 318 (615)
T ss_dssp TBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---------EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT
T ss_pred ccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---------cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC
Confidence 688999999999 9999999999999999999875 445555555 467888888559999999999
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
|.|++||+.+++++..+..|.++|++++| |+ |++++.||.+++|+..
T Consensus 319 g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 319 GTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp SCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 99999999999999999999999999999 77 7777777777777754
No 69
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.9e-39 Score=292.64 Aligned_cols=282 Identities=15% Similarity=0.184 Sum_probs=241.3
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCc-eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ-VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
..+.+++ |+|+|+.++++..+ +.+.+|...... ......|...|.+++|+|++++|++++ ||.|++||+.++...
T Consensus 10 ~~v~~~~--~s~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 10 KPAYSFH--VTADGQMQPVPFPP-DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EECCEEE--ECSSSCEEECCCCT-TSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred CceeEEE--ECCCCCEEEeecCC-CcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 4566777 99999999988877 556666544333 334456889999999999999999998 999999999887543
Q ss_pred e---eec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 116 K---KWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 116 ~---~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
. .+. .|...|.+++|+|++++|++++.||.|++||+.+ ........+..|...|.+++|++++ .
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~--~ 154 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---------PTPRIKAELTSSAPACYALAISPDS--K 154 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---------C--EEEEEEECSSSCEEEEEECTTS--S
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---------CCcceeeecccCCCceEEEEECCCC--C
Confidence 3 333 7899999999999999999999999999999965 2223456677899999999999987 8
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
++++++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.||.|++||+++. ..+..+ .|.
T Consensus 155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~-~~~ 224 (337)
T 1gxr_A 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQH-DFT 224 (337)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-ECS
T ss_pred EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---------ceEeee-cCC
Confidence 99999999999999999999888887 7889999999999999999999999999999876 333333 477
Q ss_pred cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 270 KAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
..+.+++|+| +.+|++++.||.|++||+.+++.. .+..|..+|.+++|+|++++|++++.||.+++|+......
T Consensus 225 ~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 8999999999 999999999999999999988754 6778899999999999999999999999999999886543
No 70
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=7.2e-40 Score=299.12 Aligned_cols=281 Identities=11% Similarity=0.069 Sum_probs=219.9
Q ss_pred CceEEecceEeeccCcccCCCCCC------ccEEEEECCCCcee-----------eeecCCCCeeEEEECCCCcEEEEe-
Q 012996 37 HGLACVGQRFLASSQLREQPSASS------GSILYWSWSKPQVE-----------VKSLPAEPIKPIAANSHGTYIAGG- 98 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~------g~i~vw~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~- 98 (451)
.+|.+++ |+|++++|++||.+. +.|++|++...... ....+...|.+++++ ++.+++|
T Consensus 15 ~PV~sv~--fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAK--FLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SCEEEEE--EEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCEEEEE--EeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 4689999 999999999987541 36999998754321 112356678888765 5566655
Q ss_pred ----------ccCCCEEEEEcCCCcceee---------eccccCCeeEEEEccCCcEEEE--eeCCCcEEEeeCcchhhh
Q 012996 99 ----------GQSGDIYMWEVASGRLLKK---------WHAHYRAVTCLVFSEDGSFLIS--GSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 99 ----------~~dg~i~iwd~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~ 157 (451)
+.|+.+++|++........ ...+...+.+++|+|||+++++ ++.|++|++||+.+
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---- 166 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---- 166 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT----
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC----
Confidence 4578899999876543211 1234566899999999999764 45789999999955
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee---ecccceeEEEECCCCCEEE
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI---VFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~ 234 (451)
...+..+ .|...|.+++|+|++ .++++++.+ .+.+|+..+++.+... .+...+.+++|+|++.+++
T Consensus 167 -------~~~~~~~-~~~~~V~~v~fspdg--~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 167 -------LTEKFEI-ETRGEVKDLHFSTDG--KVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp -------TEEEEEE-ECSSCCCEEEECTTS--SEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred -------CcEEEEe-CCCCceEEEEEccCC--ceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 3334444 377889999999998 788888755 5677777777665433 2677899999999999999
Q ss_pred EEeCCC----cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe-ec
Q 012996 235 AGSRDG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF-RL 308 (451)
Q Consensus 235 ~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~ 308 (451)
+++.++ .++.|++...... ......+.+|...|++++|+| +.+||+|+.|++|+|||+.+++++.++ .+
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTS-----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEE-----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred EEecCCcceeEEeecccccceec-----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 998887 5888888765310 122456778999999999999 999999999999999999999999885 78
Q ss_pred CCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 309 AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 309 ~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
|..+|++++|+|||++||++|.|++|+||++..
T Consensus 311 H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 311 HSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999999999853
No 71
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1e-39 Score=292.56 Aligned_cols=249 Identities=18% Similarity=0.170 Sum_probs=208.5
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~ 152 (451)
..|.+.|.+++|+|+|++||+|+.|+.|+|||+.++. .+..+.+|.+.|.+++|+| ++++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 4588999999999999999999999999999998774 4677899999999999986 48999999999999999996
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee-cccceeEEEECC
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV-FPSVIDAIALDP 228 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~-~~~~i~~~~~~~ 228 (451)
+ ........+.+|...|.+++|+|+..+.+|++++.|+.|++||++.+... ..+. |...+.+++|+|
T Consensus 90 ~---------~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 90 N---------GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp S---------SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred C---------CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 5 22234566788999999999999844489999999999999999876322 2222 677899999999
Q ss_pred C-----------------CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C----CEEEEE
Q 012996 229 A-----------------EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG 286 (451)
Q Consensus 229 ~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~ 286 (451)
+ +.+|++|+.|+.|++||+.... ....+..+.+|...|.+++|+| + .+|++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~ 234 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASC 234 (316)
T ss_dssp CCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEE
T ss_pred ccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceEEEEecCCCCCCCceEEEE
Confidence 7 4789999999999999996532 1245667889999999999999 5 789999
Q ss_pred cCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 287 SEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 287 ~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+.||+|++||+.+.. ....+..|.+.|.+++|+|++++|++++.|+.+++|+..
T Consensus 235 s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 235 SQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp ETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999987631 234556788999999999999999999999999999965
No 72
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.7e-38 Score=321.73 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=231.8
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||+++ .||.|+|||+.+++.+..+.. |...|.+++ |+|+++++++++.+ |.|++||+.++..... ..|..
T Consensus 26 ~~la~~~-~~g~v~iwd~~~~~~~~~~~~---~~~~v~~~~--~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~ 98 (814)
T 3mkq_A 26 PWVLTTL-YSGRVEIWNYETQVEVRSIQV---TETPVRAGK--FIARKNWIIVGSDD-FRIRVFNYNTGEKVVDFEAHPD 98 (814)
T ss_dssp SEEEEEE-TTSEEEEEETTTTEEEEEEEC---CSSCEEEEE--EEGGGTEEEEEETT-SEEEEEETTTCCEEEEEECCSS
T ss_pred CEEEEEe-CCCEEEEEECCCCceEEEEec---CCCcEEEEE--EeCCCCEEEEEeCC-CeEEEEECCCCcEEEEEecCCC
Confidence 3688898 999999999999999988875 446788888 99999999999998 9999999998876544 45889
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.|.+++|+|++++|++|+.||.|++||+.++ .....+.+|...|.+++|+| ++..|++++.||.|++||+.+
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~------ 172 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ------ 172 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC------
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC------
Confidence 9999999999999999999999999999887 66778889999999999999 889999999999999999954
Q ss_pred hhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996 160 SQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (451)
......+. .+...+.+++|+|.+++.++++++.||.|++||+.+++.+..+. |...|.+++|+|++.++++++
T Consensus 173 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 247 (814)
T 3mkq_A 173 -----STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247 (814)
T ss_dssp -----SSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred -----CcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 22233333 34588999999994444899999999999999999999888887 788999999999999999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCC
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~ 299 (451)
.||.|++||+.+. .....+..|...+.+++|+| +. .+++++.++.+.+|++..
T Consensus 248 ~dg~v~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 248 EDGTLKIWNSSTY---------KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp TTSCEEEEETTTC---------SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred CCCeEEEEECCCC---------cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 9999999999875 45677888999999999999 55 234445566788887653
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-38 Score=291.03 Aligned_cols=276 Identities=19% Similarity=0.247 Sum_probs=245.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.+|++++ .||.|++||+.+++.+..+.. |...|.+++ |+|+++++++++.| |.|++||+.+++......+...
T Consensus 45 ~~l~~~~-~dg~i~vwd~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~ 117 (369)
T 3zwl_B 45 DLLFSCS-KDSSASVWYSLNGERLGTLDG---HTGTIWSID--VDCFTKYCVTGSAD-YSIKLWDVSNGQCVATWKSPVP 117 (369)
T ss_dssp CEEEEEE-SSSCEEEEETTTCCEEEEECC---CSSCEEEEE--ECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEe-CCCEEEEEeCCCchhhhhhhh---cCCcEEEEE--EcCCCCEEEEEeCC-CeEEEEECCCCcEEEEeecCCC
Confidence 4688999 999999999999999988875 456788888 99999999999998 9999999999888777778899
Q ss_pred eeEEEECCCCcEEEEeccC-----CCEEEEEcCCCc-----------ceeeeccccC--CeeEEEEccCCcEEEEeeCCC
Q 012996 83 IKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR-----------LLKKWHAHYR--AVTCLVFSEDGSFLISGSEDG 144 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg 144 (451)
|.+++|+|+++++++++.+ |.|++||+..+. ....+..|.+ .+.+++|+|++++|++++.||
T Consensus 118 v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 197 (369)
T 3zwl_B 118 VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197 (369)
T ss_dssp EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence 9999999999999999998 999999997764 3344455666 999999999999999999999
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEE
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAI 224 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~ 224 (451)
.|++||+.+ .......+..|...|.+++|++++ .+|++++.|+.|++||+++++.+..+.+...+.++
T Consensus 198 ~i~i~d~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 198 KISKYDVSN----------NYEYVDSIDLHEKSISDMQFSPDL--TYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp EEEEEETTT----------TTEEEEEEECCSSCEEEEEECTTS--SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEEEECCC----------CcEeEEEEecCCCceeEEEECCCC--CEEEEecCCceEEEEECCCCceeeeecCCCCceeE
Confidence 999999954 144667788899999999999988 89999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCC--------------cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC
Q 012996 225 ALDPAEHVFYAGSRDG--------------SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED 289 (451)
Q Consensus 225 ~~~~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d 289 (451)
+|+|++.++++++.++ .+++||.... ..+..+.+|...|++++|+| +.+|++++.|
T Consensus 266 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 266 VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---------EEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp EECSSSSEEEEEECCC-------------CEEEEEETTTC---------CEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---------cchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 9999999999999988 8999999876 55678889999999999999 9999999999
Q ss_pred CcEEEEeCCCCceEEEe
Q 012996 290 GMVRVWDPITHNIVRMF 306 (451)
Q Consensus 290 g~i~iwd~~~~~~~~~~ 306 (451)
|.|++|++..+.....+
T Consensus 337 g~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 337 GFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp SEEEEEEECHHHHTCCC
T ss_pred CeEEEEECccccchhHH
Confidence 99999999876544433
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.9e-38 Score=296.58 Aligned_cols=296 Identities=17% Similarity=0.263 Sum_probs=248.9
Q ss_pred eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996 26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI 104 (451)
Q Consensus 26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 104 (451)
...+.+|...+ +.+ +.++++++++++.| |.|++||+.+++.... ..|...|.+++|+|++ +|++|+.||.|
T Consensus 114 ~~~l~~h~~~v--~~~----~~~~~~~l~sgs~d-g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i 185 (464)
T 3v7d_B 114 RTTLRGHMTSV--ITC----LQFEDNYVITGADD-KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTV 185 (464)
T ss_dssp EEEEECCSSSC--EEE----EEEETTEEEEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCE
T ss_pred eEEEcCCCCCc--EEE----EEECCCEEEEEcCC-CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCE
Confidence 34555544322 344 44577899999998 9999999998876654 4589999999999988 89999999999
Q ss_pred EEEEcCCCcceeeeccccCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCcchhhhhhh------------hcccccceec
Q 012996 105 YMWEVASGRLLKKWHAHYRAVTCLVFS--EDGSFLISGSEDGCVRIWSLLTVFEECES------------QRASHLYLHS 170 (451)
Q Consensus 105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------------~~~~~~~~~~ 170 (451)
++||+.+++.+..+.+|.+.|.+++|+ +++.+|++|+.||.|++||+.+....... ..........
T Consensus 186 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred EEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 999999999999999999999999998 47899999999999999999764321110 0011123556
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
+.+|...+.++ ++++ .++++++.||.|++||+++++.+..+. |...|.+++|+|++.++++|+.||.|++||+.+
T Consensus 266 ~~~~~~~v~~~--~~~~--~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHG--NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp ECCCSSCEEEE--EEET--TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccCccceEEEE--cCCC--CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 78899998877 4566 799999999999999999999988887 788999999999999999999999999999988
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+ ..+..+.+|...|.++.|+ +.+|++|+.||.|++||+.++.....+. |...+..++|+|++.+|++++
T Consensus 342 ~---------~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 342 G---------ELMYTLQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS 410 (464)
T ss_dssp T---------EEEEEECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE
T ss_pred C---------cEEEEEeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec
Confidence 6 6678889999999999998 6899999999999999999988776654 577889999999999999998
Q ss_pred CCCCccccccCCCCCC
Q 012996 330 FSNPHTSSRRHGSQLP 345 (451)
Q Consensus 330 ~d~~i~iw~~~~~~~~ 345 (451)
||.+++|++..+.+.
T Consensus 411 -dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 411 -ENQFNIYNLRSGKLV 425 (464)
T ss_dssp -TTEEEEEETTTCCEE
T ss_pred -CCeEEEEECCCCcEE
Confidence 999999999876543
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-38 Score=295.41 Aligned_cols=268 Identities=17% Similarity=0.239 Sum_probs=230.8
Q ss_pred EEeecCCCCCCeEEEECccCc------eeeeeecCCCCCCceEEecceEeec----c---CcccCCCCCCccEEEEECCC
Q 012996 4 LIASSSVADTGIGCWDLESGA------EQLRYKSCASPPHGLACVGQRFLAS----S---QLREQPSASSGSILYWSWSK 70 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~----~---~~l~~~~~d~g~i~vw~~~~ 70 (451)
+|++|+ .||.|++||+.+++ .+..+.. |...|.+++ |+|+ + +++++++.| |.|++|++.+
T Consensus 28 ~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~~g~~~~~l~s~~~d-g~i~iw~~~~ 100 (397)
T 1sq9_A 28 FTVSCS-GDGYLKVWDNKLLDNENPKDKSYSHFV---HKSGLHHVD--VLQAIERDAFELCLVATTSFS-GDLLFYRITR 100 (397)
T ss_dssp EEEEEE-TTSEEEEEESBCCTTCCGGGGEEEEEC---CTTCEEEEE--EEEEEETTTEEEEEEEEEETT-SCEEEEEEEE
T ss_pred eEEEEc-CCCEEEEEECCCcccccCCCcceEEec---CCCcEEEEE--EecccccCCccccEEEEEcCC-CCEEEEEccC
Confidence 688999 99999999999988 6666664 556788888 9999 9 999999998 9999999987
Q ss_pred Cc------eeeeecC-----CCCeeEEEEC----CCCcE-EEEeccCCCEEEEEcCC------Cccee-----ee-----
Q 012996 71 PQ------VEVKSLP-----AEPIKPIAAN----SHGTY-IAGGGQSGDIYMWEVAS------GRLLK-----KW----- 118 (451)
Q Consensus 71 ~~------~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~----- 118 (451)
+. ......| ...|.+++|+ |++++ |++|+.||.|++||+.+ ++.+. .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (397)
T 1sq9_A 101 EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVE 180 (397)
T ss_dssp CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEEC
T ss_pred CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeec
Confidence 76 3344445 4899999999 99999 99999999999999998 77776 77
Q ss_pred --ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC---C---cCceeEEEEeecCCee
Q 012996 119 --HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG---H---TLRITDIVIGYGGVSA 190 (451)
Q Consensus 119 --~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~i~~~~~~~~~ 190 (451)
..|...|.+++|+|++ +|++++.||.|++||+++ ...+..+.. | ...|.+++|++++ .
T Consensus 181 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~-----------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~--~ 246 (397)
T 1sq9_A 181 SPMTPSQFATSVDISERG-LIATGFNNGTVQISELST-----------LRPLYNFESQHSMINNSNSIRSVKFSPQG--S 246 (397)
T ss_dssp CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTT-----------TEEEEEEECCC---CCCCCEEEEEECSST--T
T ss_pred cccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCC-----------CceeEEEeccccccccCCccceEEECCCC--C
Confidence 4488999999999999 999999999999999954 345666677 8 9999999999988 8
Q ss_pred EEEEeeCC---CcEEEEEcCCCceeeeee--------------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCC
Q 012996 191 TIVSASED---RTCKVWSLLKGRLLRNIV--------------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 191 ~l~s~~~d---~~i~iwd~~~~~~~~~~~--------------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
+|++++.| +.|++||+++++.+..+. +...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 247 ~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--- 323 (397)
T 1sq9_A 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--- 323 (397)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---
T ss_pred EEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---
Confidence 99999999 999999999998888776 6788999999999999999999999999999876
Q ss_pred CCCCCceeeeeec------cC---------------CcceeEEEEec-C----------CEEEEEcCCCcEEEEeCCCCc
Q 012996 254 TSSYGMHIIGSLS------DH---------------SKAVTCLAYST-G----------DLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 254 ~~~~~~~~~~~~~------~~---------------~~~v~~~~~~~-~----------~~l~s~~~dg~i~iwd~~~~~ 301 (451)
..+..+. +| ...|++++|+| + .+|++++.||.|++||+.+++
T Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ------ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 4566666 67 99999999999 6 799999999999999998763
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.4e-39 Score=293.83 Aligned_cols=281 Identities=14% Similarity=0.186 Sum_probs=231.4
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCC--CCCceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeee-e
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCAS--PPHGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVK-S 77 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~-~ 77 (451)
+++++ .++.|++||+.+++.+..+..+.. +...+.+++ |+|+ +.++++++.| |.|++||+.+++.... .
T Consensus 37 ~~~~~-~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~l~~~~~d-g~i~v~d~~~~~~~~~~~ 112 (366)
T 3k26_A 37 VFATV-GSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA--WTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYV 112 (366)
T ss_dssp EEEEE-ETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEE--EEECTTTCCEEEEEEETT-CEEEEECTTTCCEEEEEE
T ss_pred EEEEC-CCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEE--eccCCCCCCCEEEEecCC-CEEEEEEchhceEeeeec
Confidence 44444 477999999999988887775543 567899999 9999 6689999888 9999999998776544 3
Q ss_pred cCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeee---ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKW---HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++
T Consensus 113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 192 (366)
T 3k26_A 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 192 (366)
T ss_dssp SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence 4889999999999 9999999999999999999999988888 78999999999999999999999999999999987
Q ss_pred hhhhhhhhc-----------------ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-----
Q 012996 154 VFEECESQR-----------------ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL----- 211 (451)
Q Consensus 154 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----- 211 (451)
......... ...........|...|.+++|+ + .++++++.|+.|++||+.++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~wd~~~~~~~~~~~ 268 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G--DLILSKSCENAIVCWKPGKMEDDIDKI 268 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T--TEEEEECSSSEEEEEEESSTTCCGGGC
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C--CEEEEEecCCEEEEEeCCCcccccccc
Confidence 543221110 0111223344599999999998 4 6999999999999999987644
Q ss_pred ---------eeeee-cccceeEEEECCC--CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC--CcceeEEEE
Q 012996 212 ---------LRNIV-FPSVIDAIALDPA--EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAY 277 (451)
Q Consensus 212 ---------~~~~~-~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~ 277 (451)
+..+. +...|.+++|+|+ +.+|++|+.||.|++||+....... .....+.+| ...|++++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~ 343 (366)
T 3k26_A 269 KPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSF 343 (366)
T ss_dssp CTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEE
T ss_pred ccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEe
Confidence 44444 6778999999999 9999999999999999998864211 234466677 799999999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
+| +.+|++++.||.|++||+.
T Consensus 344 s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 344 SRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCCeEEEEeCCCEEEEEEec
Confidence 99 9999999999999999985
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-38 Score=322.14 Aligned_cols=290 Identities=18% Similarity=0.271 Sum_probs=256.7
Q ss_pred eeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCE
Q 012996 26 QLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDI 104 (451)
Q Consensus 26 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 104 (451)
.+.+.+ |...|.+++ |+|+++++++++.+ |.|++||+.++..... ..|..+|.+++|+|++++|++|+.||.|
T Consensus 6 ~~~~~~---h~~~v~~i~--~sp~~~~la~~~~~-g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 6 KKTFSN---RSDRVKGID--FHPTEPWVLTTLYS-GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp EEEEEE---ECSCEEEEE--ECSSSSEEEEEETT-SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred ceeeec---CCCceEEEE--ECCCCCEEEEEeCC-CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 344544 557789999 99999999999988 9999999988776544 4588999999999999999999999999
Q ss_pred EEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 105 YMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 105 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++||+.+ .......+.+|...|.+++|+
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----------~~~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----------NWALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----------TSEEEEEEECCSSCEEEEEEE
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----------CceEEEEEcCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999954 234566778899999999999
Q ss_pred e-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCc
Q 012996 185 Y-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGM 259 (451)
Q Consensus 185 ~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 259 (451)
| ++ ..+++++.||.|++||+.++.....+. +...+.+++|+| ++.++++++.||.|++||+.+.
T Consensus 150 p~~~--~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~--------- 218 (814)
T 3mkq_A 150 PKDP--STFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------- 218 (814)
T ss_dssp TTEE--EEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---------
T ss_pred cCCC--CEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------
Confidence 9 66 899999999999999999888777666 348899999999 9999999999999999999875
Q ss_pred eeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCcccc
Q 012996 260 HIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSS 337 (451)
Q Consensus 260 ~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw 337 (451)
..+..+.+|...|++++|+| +.+|++++.||.|++||+.+++.+..+..|...+.+++|+|++..+ ++++.++.+.+|
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEE
Confidence 56778889999999999999 9999999999999999999999999999999999999999998743 555567778888
Q ss_pred ccCCC
Q 012996 338 RRHGS 342 (451)
Q Consensus 338 ~~~~~ 342 (451)
+....
T Consensus 299 ~~~~~ 303 (814)
T 3mkq_A 299 SLGND 303 (814)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 86644
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=4.3e-38 Score=295.19 Aligned_cols=281 Identities=19% Similarity=0.338 Sum_probs=242.7
Q ss_pred eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 28 RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 28 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
.+..+..+...|.++. ++++++++++.| |.|++||..+++.... ..|...|.+++| ++++|++|+.||.|++
T Consensus 125 ~~~~~~~~~~~v~~~~----~d~~~l~~g~~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~v 197 (435)
T 1p22_A 125 RIHCRSETSKGVYCLQ----YDDQKIVSGLRD-NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 197 (435)
T ss_dssp CEECCCSSCCCEEEEE----CCSSEEEEEESS-SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEecccCCCCcEEEEE----ECCCEEEEEeCC-CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEE
Confidence 3455666777888866 489999999998 9999999998776544 458899999999 7899999999999999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeec
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYG 186 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 186 (451)
||+.+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+.+. ........+.+|...|.++++ +
T Consensus 198 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~--~ 265 (435)
T 1p22_A 198 WDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASP--------TDITLRRVLVGHRAAVNVVDF--D 265 (435)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSS--------SCCEEEEEECCCSSCEEEEEE--E
T ss_pred EECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCC--------CCceeeeEecCCCCcEEEEEe--C
Confidence 9999999999999999999999997 458999999999999999652 112223567889999999998 4
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
+ .++++++.||.|++||+++++.+..+. +...+.++++ ++.++++|+.||.|++||++++ ..+..+
T Consensus 266 ~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---------~~~~~~ 332 (435)
T 1p22_A 266 D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---------ACLRVL 332 (435)
T ss_dssp T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---------CEEEEE
T ss_pred C--CEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---------CEEEEE
Confidence 4 799999999999999999999998887 7888999998 5789999999999999999886 557788
Q ss_pred ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc---------eEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN---------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
.+|...|.+++|+ +.+|++|+.||.|++||+.++. ++..+..|.++|++++| ++.+|++++.||.|++
T Consensus 333 ~~h~~~v~~~~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~i 409 (435)
T 1p22_A 333 EGHEELVRCIRFD-NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILI 409 (435)
T ss_dssp CCCSSCEEEEECC-SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEE
T ss_pred eCCcCcEEEEEec-CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEE
Confidence 8999999999995 7899999999999999997766 88999999999999999 7899999999999999
Q ss_pred cccCCCC
Q 012996 337 SRRHGSQ 343 (451)
Q Consensus 337 w~~~~~~ 343 (451)
|++.+..
T Consensus 410 wd~~~~~ 416 (435)
T 1p22_A 410 WDFLNDP 416 (435)
T ss_dssp EC-----
T ss_pred EECCCCC
Confidence 9987654
No 79
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.2e-38 Score=283.92 Aligned_cols=281 Identities=21% Similarity=0.311 Sum_probs=228.4
Q ss_pred EEEeecCCCCCCeEEEECccCceee--eeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQL--RYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLP 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~ 79 (451)
.+||||+ .||+|+|||+.+++... ......+|...|.++. |+|+++++++++.| +.|++|+......... ..+
T Consensus 52 ~~l~S~s-~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~--~s~dg~~l~s~~~d-~~i~~~~~~~~~~~~~~~~~ 127 (340)
T 4aow_A 52 DMILSAS-RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV--ISSDGQFALSGSWD-GTLRLWDLTTGTTTRRFVGH 127 (340)
T ss_dssp TEEEEEE-TTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECC
T ss_pred CEEEEEc-CCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEE--ECCCCCEEEEEccc-ccceEEeecccceeeeecCC
Confidence 3789999 99999999987654321 1122235668899999 99999999999998 9999999987776544 446
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc-eeeeccccCCeeEEEEccCC--cEEEEeeCCCcEEEeeCcchhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSLLTVFE 156 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~ 156 (451)
...+..+.+++++.+|++|+.|+.+++||+..... .....+|...+.+++|++++ .++++++.|+.|++||+.+
T Consensus 128 ~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~--- 204 (340)
T 4aow_A 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--- 204 (340)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---
T ss_pred CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC---
Confidence 77899999999999999999999999999876544 34457899999999998854 5788999999999999954
Q ss_pred hhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE
Q 012996 157 ECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 236 (451)
......+.+|...|++++|+|++ .+|++++.||.|++||+++.+.+..+.+...+.+++|+|++.++ ++
T Consensus 205 --------~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~ 273 (340)
T 4aow_A 205 --------CKLKTNHIGHTGYLNTVTVSPDG--SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CA 273 (340)
T ss_dssp --------TEEEEEECCCSSCEEEEEECTTS--SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EE
T ss_pred --------CceeeEecCCCCcEEEEEECCCC--CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-ec
Confidence 45667788999999999999988 89999999999999999999999999988999999999987655 56
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
+.|+.|++||++..................+|...|++++|+| +++|++|+.||.|+|||+.+|.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 6799999999987532211111122234557899999999999 9999999999999999999875
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.3e-38 Score=309.98 Aligned_cols=266 Identities=24% Similarity=0.356 Sum_probs=223.1
Q ss_pred EEEeecCCCCCCeEEEECccCc-----eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-
Q 012996 3 LLIASSSVADTGIGCWDLESGA-----EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK- 76 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~- 76 (451)
.+|+||+ .||+|++||+.+.. ....+. +|...|.+++ |+|+++++++++.| |+|++||+.++.....
T Consensus 396 ~~l~s~s-~D~~i~~W~~~~~~~~~~~~~~~~~---~h~~~v~~v~--~s~~g~~l~sgs~D-g~v~vwd~~~~~~~~~~ 468 (694)
T 3dm0_A 396 DIIVSAS-RDKSIILWKLTKDDKAYGVAQRRLT---GHSHFVEDVV--LSSDGQFALSGSWD-GELRLWDLAAGVSTRRF 468 (694)
T ss_dssp SEEEEEE-TTSEEEEEECCCSTTCSCEEEEEEE---CCSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEE
T ss_pred CEEEEEe-CCCcEEEEEccCCCcccccccceec---CCCCcEEEEE--ECCCCCEEEEEeCC-CcEEEEECCCCcceeEE
Confidence 3789999 99999999987643 334444 4667888998 99999999999998 9999999998776543
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee---eccccCCeeEEEEccCC--cEEEEeeCCCcEEEeeC
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK---WHAHYRAVTCLVFSEDG--SFLISGSEDGCVRIWSL 151 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~vwd~ 151 (451)
..|...|.+++|+|++++|++|+.|+.|++||......... ..+|...|.+++|+|++ ..|++++.|+.|++||+
T Consensus 469 ~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 469 VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 56889999999999999999999999999999865433222 25788999999999976 68999999999999999
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
++ ......+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+.+...+.+++|+|++.
T Consensus 549 ~~-----------~~~~~~~~~h~~~v~~v~~spdg--~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 549 SN-----------CKLRSTLAGHTGYVSTVAVSPDG--SLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp TT-----------CCEEEEECCCSSCEEEEEECTTS--SEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred CC-----------CcEEEEEcCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 54 45567788999999999999998 899999999999999999999998888888999999999998
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------------------cCCcceeEEEEec-CCEEEEEcCCCc
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------------------DHSKAVTCLAYST-GDLLISGSEDGM 291 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~-~~~l~s~~~dg~ 291 (451)
++++++ ++.|++||+.+... +..+. .+...+++++|+| +.+|++|+.||.
T Consensus 616 ~l~~~~-~~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~ 685 (694)
T 3dm0_A 616 WLCAAT-EHGIKIWDLESKSI---------VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV 685 (694)
T ss_dssp EEEEEE-TTEEEEEETTTTEE---------EEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEc-CCCEEEEECCCCCC---------hhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence 888766 55699999987632 22211 1223478999999 999999999999
Q ss_pred EEEEeCC
Q 012996 292 VRVWDPI 298 (451)
Q Consensus 292 i~iwd~~ 298 (451)
|+|||+.
T Consensus 686 i~iW~i~ 692 (694)
T 3dm0_A 686 IRVWGIG 692 (694)
T ss_dssp EEEEEC-
T ss_pred EEEEecc
Confidence 9999985
No 81
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-38 Score=289.60 Aligned_cols=289 Identities=13% Similarity=0.075 Sum_probs=233.9
Q ss_pred EEEeecCCCCCCeEEEECccCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee---e
Q 012996 3 LLIASSSVADTGIGCWDLESGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK---S 77 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~---~ 77 (451)
.+||+++ .||.|++||+.+++ .+..+.. |...|.+++ |+|+++++++++.| |.|++||+.+++.... .
T Consensus 21 ~~l~~~~-~d~~v~i~~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~ 93 (372)
T 1k8k_C 21 TQIAICP-NNHEVHIYEKSGNKWVQVHELKE---HNGQVTGVD--WAPDSNRIVTCGTD-RNAYVWTLKGRTWKPTLVIL 93 (372)
T ss_dssp SEEEEEC-SSSEEEEEEEETTEEEEEEEEEC---CSSCEEEEE--EETTTTEEEEEETT-SCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEe-CCCEEEEEeCCCCcEEeeeeecC---CCCcccEEE--EeCCCCEEEEEcCC-CeEEEEECCCCeeeeeEEee
Confidence 3688998 89999999999887 7777765 556788888 99999999999988 9999999988764322 4
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc----eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
.|...|.+++|+|++++|++|+.||.|++||+..+.. ......|...|.+++|+|++++|++++.||.|++||++.
T Consensus 94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 173 (372)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence 5788999999999999999999999999999988763 233367899999999999999999999999999999753
Q ss_pred hhhhhh-------hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEE
Q 012996 154 VFEECE-------SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIA 225 (451)
Q Consensus 154 ~~~~~~-------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~ 225 (451)
...... ........+..+..|...|.+++|++++ .+|++++.|+.|++||+++++.+..+. +...+.+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 251 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVT 251 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEE
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEE
Confidence 211000 0012345667778899999999999988 899999999999999999999988887 667999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEEccC--CCCCC--C---------------------CCCceee------eee-ccCCccee
Q 012996 226 LDPAEHVFYAGSRDGSIYIAALNA--ESPST--S---------------------SYGMHII------GSL-SDHSKAVT 273 (451)
Q Consensus 226 ~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~--~---------------------~~~~~~~------~~~-~~~~~~v~ 273 (451)
|+|++.++++| .|+.|++|++.. +.... . ....... ..+ .+|...|+
T Consensus 252 ~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 330 (372)
T 1k8k_C 252 FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVS 330 (372)
T ss_dssp EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEE
T ss_pred EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcc
Confidence 99999988887 899999999987 31000 0 0000110 223 48999999
Q ss_pred EEEEec--C---CEEEEEcCCCcEEEEeCCCCc
Q 012996 274 CLAYST--G---DLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 274 ~~~~~~--~---~~l~s~~~dg~i~iwd~~~~~ 301 (451)
+++|++ + .+|++|+.||.|++||+.+++
T Consensus 331 ~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 331 QISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 999876 5 899999999999999987654
No 82
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.7e-37 Score=275.61 Aligned_cols=249 Identities=15% Similarity=0.202 Sum_probs=205.3
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC--c-eeeeecCCCCeeEEEECCC--CcEEEEeccCCCEEEEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP--Q-VEVKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~--~-~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd 108 (451)
+|...|.+++ |+|+|++||+++.| ++|++|++... . ......|.++|.+++|+|+ +++|++|+.||.|++||
T Consensus 7 ~h~~~V~~~~--~s~~g~~las~s~D-~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 7 AHNEMIHDAV--MDYYGKRMATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp SCSSCEEEEE--ECTTSSEEEEEETT-SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred CCcCceEEEE--ECCCCCEEEEEeCC-CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 5667899999 99999999999998 99999998743 2 2344568999999999863 89999999999999999
Q ss_pred cCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 109 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
+.+++ .+..+.+|...|.+++|+|+ +.+|++++.||.|++||+++. .......+.+|...|.+++|+
T Consensus 84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~---------~~~~~~~~~~h~~~v~~~~~~ 154 (297)
T 2pm7_B 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN---------GTTSPIIIDAHAIGVNSASWA 154 (297)
T ss_dssp BSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSS---------SCBCCEEEECCSSCEEEEEEC
T ss_pred cCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCC---------CceeeeeeecccCccceEeec
Confidence 98874 56677889999999999997 889999999999999999652 111234567899999999999
Q ss_pred ecC-----------CeeEEEEeeCCCcEEEEEcCCCc----eeeeee-cccceeEEEECCCC---CEEEEEeCCCcEEEE
Q 012996 185 YGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPAE---HVFYAGSRDGSIYIA 245 (451)
Q Consensus 185 ~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~ 245 (451)
|+. .+.+|++|+.|++|++||++++. ....+. |...|.+++|+|++ .+|++++.|+.|++|
T Consensus 155 p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 155 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 863 12689999999999999998765 444554 78899999999984 899999999999999
Q ss_pred EccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 246 ALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|++...... .........|...|.+++|+| +.+|++++.||.|++|+..
T Consensus 235 d~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 235 TQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EeCCCCCcc----ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 998643110 011111256788999999999 9999999999999999976
No 83
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.1e-38 Score=295.49 Aligned_cols=285 Identities=13% Similarity=0.127 Sum_probs=225.5
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc------------eeeeecCC------------CCeeEEEECC
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------------VEVKSLPA------------EPIKPIAANS 90 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~------------~~~~~~~~------------~~v~~~~~~~ 90 (451)
+...|.+++ |+|+|++||+++.| |.|+||++.++. ......|. ..|.+++|+|
T Consensus 27 ~~~~V~~v~--~s~~g~~la~g~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 27 EADIISTVE--FNHSGELLATGDKG-GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp GGGSEEEEE--ECSSSSEEEEEETT-SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccCcEEEEE--ECCCCCEEEEEcCC-CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 457899999 99999999999998 999999998765 22334576 8899999999
Q ss_pred CC--cEEEEeccCCCEEEEEcCCCcce---------------------------------------ee-eccccCCeeEE
Q 012996 91 HG--TYIAGGGQSGDIYMWEVASGRLL---------------------------------------KK-WHAHYRAVTCL 128 (451)
Q Consensus 91 ~~--~~l~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~ 128 (451)
++ .+|++++.||.|++||+.++... .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 89999999999999999764432 12 36799999999
Q ss_pred EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
+|+|++++|++| .||.|++||+.+........ ......+.+|...|.+++|+|++. .+|++++.||.|++||+++
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIV---DIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEE---ECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCEEEEETTT
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeee---ecccccccccCcceEEEEECCCCC-cEEEEEeCCCeEEEEECcC
Confidence 999999999998 79999999996411000000 000114678999999999999853 6999999999999999999
Q ss_pred Cce----eeeee-ccc------------ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 209 GRL----LRNIV-FPS------------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 209 ~~~----~~~~~-~~~------------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
++. ...+. +.. .|.+++|+|++++|++++. +.|++||++... .++..+.+|...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--------~~~~~~~~~~~~ 329 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--------RPVETYQVHEYL 329 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--------SCSCCEESCGGG
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--------cccceeeccccc
Confidence 886 55555 333 8999999999999999999 999999998732 345566666532
Q ss_pred ---------------eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---------------------------
Q 012996 272 ---------------VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL--------------------------- 308 (451)
Q Consensus 272 ---------------v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------- 308 (451)
+..++|+| +.+|++|+.||.|++||+.+++.+. +..
T Consensus 330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccc
Confidence 33499999 9999999999999999999987763 222
Q ss_pred ------CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 309 ------AKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 309 ------~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
+...|..++|+|++.+||+++.++ +.+|.
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 234689999999999999998876 55554
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=283.83 Aligned_cols=295 Identities=15% Similarity=0.189 Sum_probs=236.5
Q ss_pred EECccCceeeeeecCCCCCCceEEecceEeec---cCcccCCCCCCccEEEEECCC-Ccee--eeecCCCCeeEEEECCC
Q 012996 18 WDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSK-PQVE--VKSLPAEPIKPIAANSH 91 (451)
Q Consensus 18 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~g~i~vw~~~~-~~~~--~~~~~~~~v~~~~~~~~ 91 (451)
|+....+.+. ...+|...|.+++ |+|+ |+++++++.| |.|++||+.+ +... ....|...|.+++|+|+
T Consensus 24 ~~~~~~~~~~---~~~~h~~~v~~~~--~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 97 (368)
T 3mmy_A 24 DNHNPMKDIE---VTSSPDDSIGCLS--FSPPTLPGNFLIAGSWA-NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDD 97 (368)
T ss_dssp CSSCTTCCEE---CSSCCSSCEEEEE--ECCTTSSSEEEEEEETT-SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTT
T ss_pred CCCCCcceeE---eccCCCCceEEEE--EcCCCCCceEEEEECCC-CcEEEEEcCCCCceeEEEeccccCCEEEEEECcC
Confidence 4444444444 4446778899999 9999 6999999988 9999999986 4432 34558899999999999
Q ss_pred CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE--ccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF--SEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
+++|++|+.||.|++||+.+++.+. +..|...|.+++| +|++.+|++++.||.|++||+++ ...+.
T Consensus 98 ~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----------~~~~~ 165 (368)
T 3mmy_A 98 GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS-----------SNPMM 165 (368)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC-----------SSCSE
T ss_pred CCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC-----------CcEEE
Confidence 9999999999999999999888766 5579999999999 88999999999999999999965 33444
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCE----EEEEeCCCcE
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHV----FYAGSRDGSI 242 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~----l~~~~~dg~i 242 (451)
.+..|. .+.++.+. + ..+++++.++.+.+|+++......... ....+.++++.++... +++++.||.|
T Consensus 166 ~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i 240 (368)
T 3mmy_A 166 VLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 240 (368)
T ss_dssp EEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred EEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence 455444 45555544 3 578889999999999998765433322 3445566666554443 9999999999
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCc------------ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
++||++.... ......+.+|.. .|++++|+| +.+|++|+.||.|++||+.+++++..+..|
T Consensus 241 ~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 241 AIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp EEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred EEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 9999987631 123445556655 799999999 999999999999999999999999999999
Q ss_pred CCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 310 KGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 310 ~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
..+|++++|+|++++|++++.|+..+.|++..
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred CCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999999999999877777553
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.4e-37 Score=286.88 Aligned_cols=269 Identities=16% Similarity=0.241 Sum_probs=222.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeecC--
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLP-- 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-- 79 (451)
.+||+|+ .||.|+|||+.+++....+.. .+|...|.+++ |+| ++.++++++.| +.|++||+.+........+
T Consensus 87 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~ 161 (383)
T 3ei3_B 87 TTVAVGS-KGGDIILWDYDVQNKTSFIQG-MGPGDAITGMK--FNQFNTNQLFVSSIR-GATTLRDFSGSVIQVFAKTDS 161 (383)
T ss_dssp TEEEEEE-BTSCEEEEETTSTTCEEEECC-CSTTCBEEEEE--EETTEEEEEEEEETT-TEEEEEETTSCEEEEEECCCC
T ss_pred CEEEEEc-CCCeEEEEeCCCcccceeeec-CCcCCceeEEE--eCCCCCCEEEEEeCC-CEEEEEECCCCceEEEeccCC
Confidence 4789999 999999999998888776643 34778899999 999 78999999988 9999999997655444433
Q ss_pred -CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhh
Q 012996 80 -AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 80 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
...|.+++|+|++++|++|+.||.|++||+ +++.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+++...
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~- 239 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD- 239 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-
T ss_pred CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-
Confidence 478999999999999999999999999998 6788889999999999999999998 999999999999999965211
Q ss_pred hhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc-----------------
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP----------------- 218 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~----------------- 218 (451)
....+..+ +|...|.+++|++ ++ .+|++++.|+.|++||+++++....+. +.
T Consensus 240 ------~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 240 ------KNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp ------TTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred ------ccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 12334444 6999999999999 87 899999999999999999887765554 21
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
..+..++++|++++ +|+.||.|++||+.++ ..+..+.+ |...+.+++|+| +.+|++|+ ||.|++|
T Consensus 311 ~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---------~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---------GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp SSEEEEECBCCTTT--CTTCCCCEEEEETTTC---------CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred CCceEEEecCCccc--ccCCCCeEEEEecCCC---------ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 23444666666666 6778999999999886 44566665 567888889999 99999997 9999999
Q ss_pred eCCC
Q 012996 296 DPIT 299 (451)
Q Consensus 296 d~~~ 299 (451)
|+.+
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9864
No 86
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-37 Score=283.46 Aligned_cols=261 Identities=14% Similarity=0.198 Sum_probs=221.7
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc--CCcEEEEeeCCCcEEE
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE--DGSFLISGSEDGCVRI 148 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~v 148 (451)
....|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++++|++++.||.|++
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 34568899999999999999999999999999999876 45667789999999999999 6999999999999999
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------------
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------------ 216 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------ 216 (451)
||+.+...... .........+..|...|.+++|+++..+.++++++.||.|++||+++++.+..+.
T Consensus 86 wd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 86 WEEDPDQEECS--GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEECTTSCTTS--SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EecCCCccccc--ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99966322110 0111456777889999999999998212899999999999999999887554432
Q ss_pred --cccceeEEEECCC---CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C----CEEEEE
Q 012996 217 --FPSVIDAIALDPA---EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G----DLLISG 286 (451)
Q Consensus 217 --~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~----~~l~s~ 286 (451)
+...+.+++|+|+ +..+++++.++.+.+|+..... ...+..+.+|...|++++|+| + .+|++|
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEEECCCCCCcceEEEEE
Confidence 4567899999997 9999999999999888776653 245677889999999999999 6 799999
Q ss_pred cCCCcEEEEeCCCC----------------------------------------------ceEEEeecCCCCeeEEEEEe
Q 012996 287 SEDGMVRVWDPITH----------------------------------------------NIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 287 ~~dg~i~iwd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~s~ 320 (451)
+.||.|++||+.++ +++..+.+|.++|++++|+|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp ETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred cCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 99999999999875 67778889999999999999
Q ss_pred cCceeeeccCCCCccccccCCCCC
Q 012996 321 RPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 321 ~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
++++|++++.||.|++|++.....
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp SSCCEEEEETTSCEEEEEECTTSC
T ss_pred CCCEEEEecCCCcEEEEecCcCcc
Confidence 999999999999999999886543
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.9e-37 Score=286.27 Aligned_cols=320 Identities=15% Similarity=0.136 Sum_probs=230.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecC----------CCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSC----------ASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKP 71 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~ 71 (451)
.+||+|+ .||.|++||+.++.....+... .+|...|.+++ |+| ++.++++++.+ |.|++||+.++
T Consensus 57 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~l~s~~~d-~~i~iwd~~~~ 132 (408)
T 4a11_B 57 RYMLSGG-SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQ--WYPHDTGMFTSSSFD-KTLKVWDTNTL 132 (408)
T ss_dssp CEEEEEE-TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEE--ECTTCTTCEEEEETT-SEEEEEETTTT
T ss_pred CEEEEEc-CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEE--EccCCCcEEEEEeCC-CeEEEeeCCCC
Confidence 4789999 9999999999988776655421 24778899999 999 77788888887 99999999998
Q ss_pred ceeeeecCCCCeeEEEECCC---CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEE
Q 012996 72 QVEVKSLPAEPIKPIAANSH---GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVR 147 (451)
Q Consensus 72 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~ 147 (451)
.......+...+.++.|+|. +.++++|+.+|.|++||+.+++.+..+..|...|.+++|+|++. +|++++.||.|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 133 QTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp EEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred ccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 88777778899999999984 45999999999999999999999999999999999999999988 589999999999
Q ss_pred EeeCcchhhhhhhh-----cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-----
Q 012996 148 IWSLLTVFEECESQ-----RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF----- 217 (451)
Q Consensus 148 vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----- 217 (451)
+||+++........ ............|...|.+++|++++ .+|++++.||.|++||+.+++.......
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 290 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN 290 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC--CEEEEecCCCeEEEEECCCCccceecccccccc
Confidence 99997642111000 01112223346799999999999988 8999999999999999998876554321
Q ss_pred -ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 218 -PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 218 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
...+........+..+++++.++.|++||+.+. ..+..+.+|...|++++|+| +.+|++|+.||.|++|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw 361 (408)
T 4a11_B 291 SKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361 (408)
T ss_dssp CSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccccceeEEecCCCceEEEEecCCEEEEEECcCC---------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEE
Confidence 122223333345667777888999999999886 56778889999999999999 9999999999999999
Q ss_pred eCCCCceEEEeecCCCCeeEEEEEe-cCceeeeccCCCCccccccC
Q 012996 296 DPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s~d~~i~iw~~~ 340 (451)
|+.+++++.....+... ..+.| ....+.+.+.++.+++|+..
T Consensus 362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 362 VPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp EECC------------------------------------------
T ss_pred eCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 99999887766543222 23343 33455667788999999854
No 88
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.7e-37 Score=288.18 Aligned_cols=277 Identities=14% Similarity=0.173 Sum_probs=229.1
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCc-----eeeeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCCC-------
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQ-----VEVKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVASG------- 112 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------- 112 (451)
++|+...+++.+..+|.|+||++.... ......|...|.+++|+| ++++|++|+.||.|++||+.++
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~ 121 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC
Confidence 777776665544434999999996542 223345889999999999 9999999999999999999988
Q ss_pred cceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEEeecCCe
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~ 189 (451)
+.+..+.+|...|.+++|+|++ .+|++++.||.|++||+.+ ...+..+ ..|...|.+++|++++
T Consensus 122 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~-- 188 (402)
T 2aq5_A 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----------GAAVLTLGPDVHPDTIYSVDWSRDG-- 188 (402)
T ss_dssp SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-----------TEEEEEECTTTCCSCEEEEEECTTS--
T ss_pred CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-----------CCccEEEecCCCCCceEEEEECCCC--
Confidence 5678889999999999999998 6999999999999999954 3455566 7899999999999988
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeee-e-cccc-eeEEEECCCCCEEEEE---eCCCcEEEEEccCCCCCCCCCCceeee
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNI-V-FPSV-IDAIALDPAEHVFYAG---SRDGSIYIAALNAESPSTSSYGMHIIG 263 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~-~-~~~~-i~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~ 263 (451)
.+|++++.||.|++||+++++.+..+ . +... +.+++|+|++.+|++| +.|+.|++||++.... ....
T Consensus 189 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~~ 261 (402)
T 2aq5_A 189 ALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-------PLSL 261 (402)
T ss_dssp SCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-------CSEE
T ss_pred CEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-------CceE
Confidence 89999999999999999999998887 3 5444 8999999999999999 7999999999988642 1111
Q ss_pred eeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCce-EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 264 SLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNI-VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 264 ~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
....|...+.+++|+| +.+|+ +|+.||.|++||+.+++. +..+.. |.++|.+++|+|++.+++++ ++.+++|+
T Consensus 262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s~--~~~~~~~~ 339 (402)
T 2aq5_A 262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVNK--CEIARFYK 339 (402)
T ss_dssp EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGGG--TEEEEEEE
T ss_pred EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecccccceec--ceeEEEEE
Confidence 2235778899999999 88886 566799999999999884 555554 45899999999999998764 56999999
Q ss_pred cCCCCC
Q 012996 339 RHGSQL 344 (451)
Q Consensus 339 ~~~~~~ 344 (451)
+....+
T Consensus 340 l~~~~~ 345 (402)
T 2aq5_A 340 LHERKC 345 (402)
T ss_dssp EETTEE
T ss_pred cCCCcE
Confidence 886543
No 89
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-36 Score=271.76 Aligned_cols=266 Identities=17% Similarity=0.195 Sum_probs=231.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc----eeeeecC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ----VEVKSLP 79 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~----~~~~~~~ 79 (451)
+|++++ .||.|++||+.+++....+..| ...+.+++ |+|+++++++++.+ |.|++|++.... ......|
T Consensus 31 ~l~s~~-~dg~v~vw~~~~~~~~~~~~~~---~~~v~~~~--~~~~~~~l~~~~~d-g~i~~~~~~~~~~~~~~~~~~~~ 103 (313)
T 3odt_A 31 KVASVS-RDGTVRLWSKDDQWLGTVVYTG---QGFLNSVC--YDSEKELLLFGGKD-TMINGVPLFATSGEDPLYTLIGH 103 (313)
T ss_dssp EEEEEE-TTSEEEEEEESSSEEEEEEEEC---SSCEEEEE--EETTTTEEEEEETT-SCEEEEETTCCTTSCC-CEECCC
T ss_pred EEEEEE-cCCcEEEEECCCCEEEEEeecC---CccEEEEE--ECCCCCEEEEecCC-CeEEEEEeeecCCCCcccchhhc
Confidence 688999 9999999999999888887765 56788888 99999999999998 999999987543 3344558
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
...|.+++| +++++++++.||.|++|| .++....+..|...+.++.|+| ++.++++++.||.|++||...
T Consensus 104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----- 174 (313)
T 3odt_A 104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----- 174 (313)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----
T ss_pred ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----
Confidence 899999999 578999999999999999 6778888899999999999998 999999999999999999632
Q ss_pred hhhcccccceecccC-CcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEE
Q 012996 159 ESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (451)
....+.. |...+.+++|++++ . +++++.||.|++||+++++.+..+. |...|.+++|+|++ .|+++
T Consensus 175 --------~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~ 242 (313)
T 3odt_A 175 --------VIKTFSGIHNDVVRHLAVVDDG--H-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSC 242 (313)
T ss_dssp --------EEEEECSSCSSCEEEEEEEETT--E-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEE
T ss_pred --------eEEEEeccCcccEEEEEEcCCC--e-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEE
Confidence 3444555 89999999999997 5 9999999999999999999998887 88999999999999 68999
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
+.||.|++||+.+. ..+..+..|...|++++|+| +. +++++.||.|++||+.+++.+....
T Consensus 243 ~~dg~v~iwd~~~~---------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 243 GEDRTVRIWSKENG---------SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp ETTSEEEEECTTTC---------CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred ecCCEEEEEECCCC---------ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 99999999999886 45677888999999999999 66 7789999999999999887766544
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=9.5e-38 Score=292.66 Aligned_cols=275 Identities=16% Similarity=0.205 Sum_probs=215.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeec---
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSL--- 78 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--- 78 (451)
.+||+|+ .||.|+|||+.+++....+. ..+|...|.+++ |+| ++.+|++++.| |+|++||+++........
T Consensus 133 ~~lasGs-~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~--f~p~~~~~l~s~s~D-~~v~iwd~~~~~~~~~~~~~~ 207 (435)
T 4e54_B 133 STVAVGS-KGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLK--FNPLNTNQFYASSME-GTTRLQDFKGNILRVFASSDT 207 (435)
T ss_dssp TCEEEEE-TTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEE--ECSSCTTEEEEECSS-SCEEEEETTSCEEEEEECCSS
T ss_pred CEEEEEe-CCCEEEEEECCCCCceeEEE-ccCCCCCEEEEE--EeCCCCCEEEEEeCC-CEEEEeeccCCceeEEeccCC
Confidence 3689999 99999999998876554432 335667888888 998 67899999888 999999998776554433
Q ss_pred CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhh
Q 012996 79 PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
+...+.+++|+|++.+|++|+.||.|++||+. ++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++..
T Consensus 208 ~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~-- 284 (435)
T 4e54_B 208 INIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR-- 284 (435)
T ss_dssp CSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC--
T ss_pred CCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc--
Confidence 24468899999999999999999999999985 567778899999999999999875 78899999999999996631
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cc------cceeEEEECCCC
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FP------SVIDAIALDPAE 230 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~------~~i~~~~~~~~~ 230 (451)
.........+|...|++++|+|++ .+|++++.||.|++||+.++.....+. +. ..+....|+|++
T Consensus 285 ------~~~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (435)
T 4e54_B 285 ------GKASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY 356 (435)
T ss_dssp ------SSSCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS
T ss_pred ------ccceEEEeeeccccccceeECCCC--CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC
Confidence 122233456799999999999988 899999999999999999887766553 21 123455677777
Q ss_pred CEEEEEe------------CCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEE-EEec-CCEEEEEcCCCcEEEE
Q 012996 231 HVFYAGS------------RDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCL-AYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 231 ~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~-~~~l~s~~~dg~i~iw 295 (451)
..++++. .++.|++||..++. .+.. ..+|...|.++ +|+| +.+|++|+ |+.|+||
T Consensus 357 ~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~---------~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 357 NLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK---------MMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp SCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC---------EEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred CEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc---------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 7777664 23579999998863 3333 45688889887 6999 99998876 8899999
Q ss_pred eCCCCceE
Q 012996 296 DPITHNIV 303 (451)
Q Consensus 296 d~~~~~~~ 303 (451)
|+.+++..
T Consensus 427 ~~~~gk~r 434 (435)
T 4e54_B 427 SQQEARTR 434 (435)
T ss_dssp CCC-----
T ss_pred ECCcCeee
Confidence 99988653
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-36 Score=285.17 Aligned_cols=283 Identities=17% Similarity=0.275 Sum_probs=245.1
Q ss_pred eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECCCCcEEEEeccCCC
Q 012996 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQSGD 103 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~ 103 (451)
....+.+|...+ +.+ +.++++++++++.| |.|++||+.+++.... ..|...|.+++|+ ++++++|+.||.
T Consensus 110 ~~~~l~~h~~~v--~~~----~~~~g~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~ 180 (445)
T 2ovr_B 110 SPKVLKGHDDHV--ITC----LQFCGNRIVSGSDD-NTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT 180 (445)
T ss_dssp CCEEEECSTTSC--EEE----EEEETTEEEEEETT-SCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred eeEEecccCCCc--EEE----EEEcCCEEEEEECC-CcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence 344555554322 343 56679999999998 9999999998876544 4588999999997 679999999999
Q ss_pred EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 104 IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
|++||+.+++.+..+.+|...|.++.|+ ++.+++|+.||.|++||+.+ ...+..+.+|...|.++.+
T Consensus 181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~-----------~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET-----------GQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS-----------CCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC-----------CcEEEEEcCCcccEEEEEE
Confidence 9999999999999999999999999996 56899999999999999954 4456778899999999998
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceee
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
++ .++++++.||.|++||+++++.+..+. +...+.+++| ++.++++|+.||.|++||+++. ..+
T Consensus 248 --~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---------~~~ 312 (445)
T 2ovr_B 248 --DG--RRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---------NCI 312 (445)
T ss_dssp --CS--SCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---------CEE
T ss_pred --CC--CEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---------CEE
Confidence 44 789999999999999999999988887 7889999999 8899999999999999999886 456
Q ss_pred eeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 263 GSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 263 ~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
..+.+|...+.++.++ +++|++|+.||.|++||+.+++++..+.. |..+|++++|+ +.+|++++.||.|++|++
T Consensus 313 ~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp EEECCCCSCEEEEEEE-TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred EEEcCCcccEEEEEEe-CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 7788999999998876 68999999999999999999999999986 78899999995 689999999999999999
Q ss_pred CCCCCCCc
Q 012996 340 HGSQLPPP 347 (451)
Q Consensus 340 ~~~~~~~~ 347 (451)
..+.....
T Consensus 390 ~~~~~~~~ 397 (445)
T 2ovr_B 390 KTGEFIRN 397 (445)
T ss_dssp TTCCEEEE
T ss_pred CCCceeee
Confidence 87655443
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.5e-38 Score=280.02 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=204.0
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce---eeeecCCCCeeEEEECC--CCcEEEEeccCCCEEEEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV---EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 108 (451)
+|...|.+++ |+|+|++||+++.| ++|++||+.++.. .....|..+|.+++|+| ++++|++|+.|+.|++||
T Consensus 11 ~H~~~V~~v~--~s~~g~~lasgs~D-~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 11 SHEDMIHDAQ--MDYYGTRLATCSSD-RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ---CCEEEEE--ECGGGCEEEEEETT-TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cccCeEEEee--EcCCCCEEEEEeCC-CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 5678899999 99999999999998 9999999987643 23456899999999986 489999999999999999
Q ss_pred cCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 109 VASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 109 ~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
+.++. ....+.+|...|.+++|+|+ +.+|++|+.||.|++||++.. ........+.+|...|.+++|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~--------~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE--------GQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS--------SCEEECCBTTSSSSCBCCCEEC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC--------CCcceeeeeccccCCcceEEEc
Confidence 98874 56677899999999999997 789999999999999998541 0112245567899999999999
Q ss_pred ecCC---------------eeEEEEeeCCCcEEEEEcCCC---ceeeeee-cccceeEEEECCCC----CEEEEEeCCCc
Q 012996 185 YGGV---------------SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPSVIDAIALDPAE----HVFYAGSRDGS 241 (451)
Q Consensus 185 ~~~~---------------~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~ 241 (451)
|+.. +.+|++++.|+.|++||++.. +....+. |...|.+++|+|++ .+|++++.||.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 8631 268999999999999999755 3445554 78899999999986 88999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|++|++....... .....+..|...|.+++|+| +.+|++++.||+|++|+..
T Consensus 240 v~iw~~~~~~~~~-----~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNT-----WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCC-----CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccc-----hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999997632100 11223456889999999999 9999999999999999975
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-38 Score=290.24 Aligned_cols=252 Identities=14% Similarity=0.152 Sum_probs=208.8
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC--cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcch
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG--RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTV 154 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~ 154 (451)
..+.++|.+++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+.+.
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~ 87 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD 87 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-----
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Confidence 346689999999999999999999999999999988 788889999999999999999999999999999999999652
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce---eeeee--cccceeEEEECCC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL---LRNIV--FPSVIDAIALDPA 229 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~--~~~~i~~~~~~~~ 229 (451)
. .......+..|...|.+++|++++ .+|++++.|+.|++||+++++. ...+. |...|.+++|+|+
T Consensus 88 ~--------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 88 G--------TWKQTLVLLRLNRAATFVRWSPNE--DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp ---------CCCCEEECCCCSSCEEEEECCTTS--SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred C--------ceeeeeEecccCCceEEEEECCCC--CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 1 133456678899999999999988 8999999999999999998863 45554 7889999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCC---------CCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSS---------YGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+++|++++.||.|++||+......... .....+..+ +|...|++++|+| +.+|++++.||.|++||+.+
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~ 236 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA 236 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS
T ss_pred CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 999999999999999999643211100 112445556 8999999999999 99999999999999999999
Q ss_pred Cce----EEEeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 300 HNI----VRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 300 ~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
++. +..+..|..+|.+++|+|++++|++++.++.+.+|..
T Consensus 237 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 237 PEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 988 8889999999999999999999999987777744443
No 94
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=269.73 Aligned_cols=275 Identities=18% Similarity=0.287 Sum_probs=231.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+||+|. |++|+|||+.+|+.+..+..+ +|...|.+++ |+|+++++++++.| |+|++|++.+++.... ..|..
T Consensus 37 ~~lAvg~--D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~--~~~~~~~l~sgs~D-g~v~iw~~~~~~~~~~~~~h~~ 110 (318)
T 4ggc_A 37 NVLAVAL--DNSVYLWSASSGDILQLLQME-QPGEYISSVA--WIKEGNYLAVGTSS-AEVQLWDVQQQKRLRNMTSHSA 110 (318)
T ss_dssp SEEEEEE--TTEEEEEETTTCCEEEEEECC-STTCCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEe--CCEEEEEECCCCCEEEEEEec-CCCCeEEEEE--ECCCCCEEEEEECC-CcEEEeecCCceeEEEecCccc
Confidence 3577765 899999999999999887654 4778899999 99999999999998 9999999998876544 44666
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCC-cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASG-RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
.+.++. +++..+++|+.++.+++|+.... ..+..+.+|...+.++.+++++++|++++.||.|++||++++..
T Consensus 111 ~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---- 184 (318)
T 4ggc_A 111 RVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG---- 184 (318)
T ss_dssp CEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTT----
T ss_pred eEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcc----
Confidence 666554 45789999999999999998776 44567889999999999999999999999999999999976321
Q ss_pred hcccccceecccCCcCceeEEEEeecCCee-EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe--
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSA-TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-- 237 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 237 (451)
..........|...|.++.+++.+..- .+++++.++.|++||...........+...+..++|+|.+..+++++
T Consensus 185 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 185 ---GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp ---BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred ---cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence 222345556788899999998876422 23567788999999999999888888899999999999999887764
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
.|+.|++||+.+. .++..+.+|...|++++|+| +.+|++|+.||+|+|||+....
T Consensus 262 ~d~~i~iwd~~~~---------~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 262 AQNQLVIWKYPTM---------AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp TTCCEEEEETTTC---------CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 7999999999886 56788999999999999999 9999999999999999997654
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=282.66 Aligned_cols=280 Identities=13% Similarity=0.206 Sum_probs=226.9
Q ss_pred EEEeecCCC---CCCeEEEECccCceeeeeecCCCCCCceEEecceEeec---cCcccCCCCCCccEEEEECCCCc--ee
Q 012996 3 LLIASSSVA---DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLAS---SQLREQPSASSGSILYWSWSKPQ--VE 74 (451)
Q Consensus 3 ~~l~s~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~d~g~i~vw~~~~~~--~~ 74 (451)
.++++|+ . ||.|+|||+.+++....... .|...|.+++ |+|+ +.++++++.+ |.|++||+.++. ..
T Consensus 32 ~l~~~~s-~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~--~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~ 105 (357)
T 3i2n_A 32 KFVTMGN-FARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGT--FGATSLQQRYLATGDFG-GNLHIWNLEAPEMPVY 105 (357)
T ss_dssp EEEEEEC---CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEE--CTTCCTTTCCEEEEETT-SCEEEECTTSCSSCSE
T ss_pred eEEEecC-ccCCCcEEEEEeCCCCcccceeee--cccCcEEEEE--EcCCCCCCceEEEecCC-CeEEEEeCCCCCccEE
Confidence 4677887 6 99999999998887644332 3567889998 9998 6999999988 999999999776 33
Q ss_pred eeecCCCCeeEEE------ECCCCcEEEEeccCCCEEEEEcCCCc-ceeeeccccC----CeeEEE----EccCCcEEEE
Q 012996 75 VKSLPAEPIKPIA------ANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWHAHYR----AVTCLV----FSEDGSFLIS 139 (451)
Q Consensus 75 ~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~s 139 (451)
....|...|.+++ |+|++++|++|+.||.|++||+.+++ .+..+..|.+ .|.++. |+|++++|++
T Consensus 106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 185 (357)
T 3i2n_A 106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA 185 (357)
T ss_dssp EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE
T ss_pred EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE
Confidence 4456889999995 57899999999999999999999887 6777766655 889998 6789999999
Q ss_pred eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee---cCCeeEEEEeeCCCcEEEEEcCCCceeeee-
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY---GGVSATIVSASEDRTCKVWSLLKGRLLRNI- 215 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~---~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~- 215 (451)
++.||.|++||+++. .. .....|...|.+++|+| ++ .++++++.||.|++||+++++....+
T Consensus 186 ~~~d~~i~i~d~~~~-----------~~-~~~~~~~~~v~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~ 251 (357)
T 3i2n_A 186 GYDNGDIKLFDLRNM-----------AL-RWETNIKNGVCSLEFDRKDISM--NKLVATSLEGKFHVFDMRTQHPTKGFA 251 (357)
T ss_dssp EETTSEEEEEETTTT-----------EE-EEEEECSSCEEEEEESCSSSSC--CEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred EccCCeEEEEECccC-----------ce-eeecCCCCceEEEEcCCCCCCC--CEEEEECCCCeEEEEeCcCCCccccee
Confidence 999999999999652 12 33456889999999999 66 89999999999999999887665444
Q ss_pred -----ecccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCC----------CCCceeeeeeccCCcceeEEEEec
Q 012996 216 -----VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS----------SYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 216 -----~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
.+...|.+++|+|++. +|++++.||.|++||++....... ......+..+.+|...|++++|+|
T Consensus 252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 331 (357)
T 3i2n_A 252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP 331 (357)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence 3788999999999998 899999999999999987543210 011246778889999999999999
Q ss_pred -CCEEE-EEcCCCcEEEEeCCCCce
Q 012996 280 -GDLLI-SGSEDGMVRVWDPITHNI 302 (451)
Q Consensus 280 -~~~l~-s~~~dg~i~iwd~~~~~~ 302 (451)
+.+|+ +++.||.|++||+.+.+.
T Consensus 332 ~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 332 DKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp SSTTEEEEEETTSEEEEEEECC---
T ss_pred CCCeEEEEecCCCcEEEEECCCccc
Confidence 88888 899999999999987654
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=280.38 Aligned_cols=254 Identities=18% Similarity=0.177 Sum_probs=216.6
Q ss_pred eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEee
Q 012996 75 VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWS 150 (451)
Q Consensus 75 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd 150 (451)
....|.+.|.+++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 345688999999999999999999999999999998 66777888999999999999976 89999999999999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee--e-ecccceeEEEEC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN--I-VFPSVIDAIALD 227 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~-~~~~~i~~~~~~ 227 (451)
+.+ ........+..|...|.+++|+++..+.++++++.|+.|++||++++..... + .+...|.+++|+
T Consensus 86 ~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~ 156 (379)
T 3jrp_A 86 EEN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWA 156 (379)
T ss_dssp EET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEEC
T ss_pred cCC---------CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEc
Confidence 965 2223566778899999999999982228999999999999999988743322 2 378899999999
Q ss_pred C-------------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec----CCEEEEEcCCC
Q 012996 228 P-------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDG 290 (451)
Q Consensus 228 ~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg 290 (451)
| ++.+|++++.||.|++||++..... ......+.+|...|++++|+| +.+|++++.||
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg 231 (379)
T 3jrp_A 157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231 (379)
T ss_dssp CCC----------CTTCEEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred CccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc-----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence 9 6999999999999999999875421 245567889999999999999 37899999999
Q ss_pred cEEEEeCCCCc-----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 291 MVRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 291 ~i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.|++||+.++. .+.....|...|++++|+|++++|++++.||.+++|++...
T Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 99999998864 22223347889999999999999999999999999998743
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.2e-36 Score=275.01 Aligned_cols=271 Identities=13% Similarity=0.093 Sum_probs=203.6
Q ss_pred EEEeecCCCCC-------CeEEEECccCceeee-----e--ecCCCCCCceEEecceEee---------ccCcccCCCCC
Q 012996 3 LLIASSSVADT-------GIGCWDLESGAEQLR-----Y--KSCASPPHGLACVGQRFLA---------SSQLREQPSAS 59 (451)
Q Consensus 3 ~~l~s~~~~dg-------~i~vwd~~~~~~~~~-----~--~~~~~~~~~v~~~~~~~~~---------~~~~l~~~~~d 59 (451)
.+||+|+ .|. .|++|++..+..... . .....+...+.+++ +.. ++..+++++.+
T Consensus 27 ~~l~sGG-g~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~--~~~~~~~~g~~~~~~~l~s~~~d 103 (365)
T 4h5i_A 27 TLLVAGG-GGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID--ASKGIILVGCNENSTKITQGKGN 103 (365)
T ss_dssp EEEEEEE-CCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE--EETTEEEEECCCCHHHHHHTSCC
T ss_pred cEEEEEC-CCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE--eCCCEEEEEECCCccEEEEecCC
Confidence 4678876 433 499999875543210 0 01223445555544 322 23344455555
Q ss_pred CccEEEEECCCCceeee----------ecCCCCeeEEEECCCCcEEEE--eccCCCEEEEEcCCCcceeeeccccCCeeE
Q 012996 60 SGSILYWSWSKPQVEVK----------SLPAEPIKPIAANSHGTYIAG--GGQSGDIYMWEVASGRLLKKWHAHYRAVTC 127 (451)
Q Consensus 60 ~g~i~vw~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 127 (451)
+.+++|++........ ..+...+.+++|+|||+++++ ++.|+.|+|||+.+++++..+. |.+.|.+
T Consensus 104 -~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~ 181 (365)
T 4h5i_A 104 -KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKD 181 (365)
T ss_dssp -CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred -CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEE
Confidence 8999999875442211 113456899999999999765 4578999999999999988885 7788999
Q ss_pred EEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC----cEEE
Q 012996 128 LVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR----TCKV 203 (451)
Q Consensus 128 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~----~i~i 203 (451)
++|+|||++|++++.+ .+.+|+..+ ...........|...|.+++|+|++ ..+++++.|+ .+++
T Consensus 182 v~fspdg~~l~s~s~~-~~~~~~~~~---------~~~~~~~~~~~~~~~v~~v~fspdg--~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 182 LHFSTDGKVVAYITGS-SLEVISTVT---------GSCIARKTDFDKNWSLSKINFIADD--TVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp EEECTTSSEEEEECSS-CEEEEETTT---------CCEEEEECCCCTTEEEEEEEEEETT--EEEEEEEESSSCCEEEEE
T ss_pred EEEccCCceEEeccce-eEEEEEecc---------CcceeeeecCCCCCCEEEEEEcCCC--CEEEEEecCCcceeEEee
Confidence 9999999999999866 566666543 2222334566789999999999998 8999998887 6888
Q ss_pred EEcCCCcee----eeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEE
Q 012996 204 WSLLKGRLL----RNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAY 277 (451)
Q Consensus 204 wd~~~~~~~----~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~ 277 (451)
|++...... ..+. +...|++++|+|++++|++|+.|+.|++||+.+. +++.. +.+|...|++++|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEE
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEE
Confidence 998766432 2222 6778999999999999999999999999999886 45555 5789999999999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+| +.+|++||.|++|+|||+..
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCC
Confidence 99 99999999999999999864
No 98
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=294.69 Aligned_cols=270 Identities=13% Similarity=0.033 Sum_probs=204.4
Q ss_pred CCceEEecceEeecc---------CcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEE
Q 012996 36 PHGLACVGQRFLASS---------QLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYM 106 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~---------~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 106 (451)
...|.+++ |+|++ ++||+++.+ +.. -..+|+++.+++++.|+.|+|
T Consensus 133 ~~~V~sv~--w~p~~~~~~~~~~~~~LAv~~~~-~~~----------------------~~~~~~~~~laS~s~D~tI~i 187 (524)
T 2j04_B 133 GGLVTDIA--WLNIEENTDIGKDIQYLAVAVSQ-YMD----------------------EPLNEHLEMFDKEKHSSCIQI 187 (524)
T ss_dssp CC--CCCS--CEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEE
T ss_pred CCceeEEE--ecccCCCCccCcCCeEEEEEEec-ccC----------------------CccchhhhhhccCCCCceEEE
Confidence 35677777 99987 788887765 210 013789999999999999999
Q ss_pred EEcCCCcce----eeeccccCCeeEEEEccC------CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC
Q 012996 107 WEVASGRLL----KKWHAHYRAVTCLVFSED------GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL 176 (451)
Q Consensus 107 wd~~~~~~~----~~~~~~~~~v~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (451)
||+.+++.. ..+..|.+.|.+++|+|+ +.+|++++.||+|++||+...............+...+.+|..
T Consensus 188 Wd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~ 267 (524)
T 2j04_B 188 FKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADS 267 (524)
T ss_dssp EEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTT
T ss_pred EEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCC
Confidence 999887653 345678899999999996 5799999999999999996532110000001123346788999
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-eeeeee-cccceeEE--EECCCC-CEEEEEeCCCcEEEEEccCCC
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-LLRNIV-FPSVIDAI--ALDPAE-HVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~-~~~~i~~~--~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.|++++|+++ ..|++|+.||+|++||++++. +...+. |...|.++ +|+|++ .+|++|+.|++|++||+++.
T Consensus 268 ~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~- 343 (524)
T 2j04_B 268 LITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI- 343 (524)
T ss_dssp CEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH-
T ss_pred CEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC-
Confidence 9999999875 479999999999999998764 334444 88899999 578887 89999999999999999875
Q ss_pred CCCCCCCceeeeeeccCCc--ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996 252 PSTSSYGMHIIGSLSDHSK--AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (451)
.....+.+|.. .|.+++|+| +..|++++.|++|++||++++.++.++.+|.++|++++|+|++++|++|
T Consensus 344 --------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sg 415 (524)
T 2j04_B 344 --------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAG 415 (524)
T ss_dssp --------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEE
T ss_pred --------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEE
Confidence 33444555643 588999999 9999999999999999999999989999999999999999999999999
Q ss_pred cCCCCccccccCCC
Q 012996 329 SFSNPHTSSRRHGS 342 (451)
Q Consensus 329 s~d~~i~iw~~~~~ 342 (451)
+.||+|++|+....
T Consensus 416 s~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 416 SADGSLIITNAARR 429 (524)
T ss_dssp ETTTEEECCBSCSS
T ss_pred ECCCEEEEEechHh
Confidence 99999999998754
No 99
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6e-36 Score=280.61 Aligned_cols=286 Identities=20% Similarity=0.333 Sum_probs=226.3
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~ 81 (451)
.+|++|+ .||.|++||+.+++....+.+ |...|.++. | +++++++++.| |.|++||+.+++.... ..|..
T Consensus 144 ~~l~~g~-~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~--~--~~~~l~sg~~d-g~i~vwd~~~~~~~~~~~~h~~ 214 (435)
T 1p22_A 144 QKIVSGL-RDNTIKIWDKNTLECKRILTG---HTGSVLCLQ--Y--DERVIITGSSD-STVRVWDVNTGEMLNTLIHHCE 214 (435)
T ss_dssp SEEEEEE-SSSCEEEEESSSCCEEEEECC---CSSCEEEEE--C--CSSEEEEEETT-SCEEEEESSSCCEEEEECCCCS
T ss_pred CEEEEEe-CCCeEEEEeCCCCeEEEEEcC---CCCcEEEEE--E--CCCEEEEEcCC-CeEEEEECCCCcEEEEEcCCCC
Confidence 3688999 999999999999999988875 446788877 6 88999999988 9999999998876544 45788
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce---eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
.|.+++|+ +.++++|+.||.|++||+.++... ..+.+|...|.+++| ++++|++|+.||.|++||+++
T Consensus 215 ~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~----- 285 (435)
T 1p22_A 215 AVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST----- 285 (435)
T ss_dssp CEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-----
T ss_pred cEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-----
Confidence 99999997 459999999999999999988766 667899999999999 588999999999999999954
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (451)
...+..+.+|...|.++.+. + .++++|+.||.|++||+++++.+..+. |...|.+++| ++.+|++|+
T Consensus 286 ------~~~~~~~~~~~~~v~~~~~~--~--~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 286 ------CEFVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp ------CCEEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred ------CcEEEEEcCCCCcEEEEEeC--C--CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 45677788999999999883 4 799999999999999999999988887 8889999999 788999999
Q ss_pred CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEE
Q 012996 238 RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNIL 317 (451)
Q Consensus 238 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~ 317 (451)
.||.|++||+..............+..+.+|...|++++|+ +.+|++|+.||.|++||+.+......... ..+...+.
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~~~~~~ 431 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD-EFQIVSSSHDDTILIWDFLNDPAAQAEPP-RSPSRTYT 431 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC-SSCEEECCSSSEEEEEC---------------------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC-CCEEEEEeCCCEEEEEECCCCCCcccCCC-CCCcccee
Confidence 99999999997754222222223677888999999999995 78899999999999999988765544332 34555555
Q ss_pred EEe
Q 012996 318 VVR 320 (451)
Q Consensus 318 ~s~ 320 (451)
|.+
T Consensus 432 ~~~ 434 (435)
T 1p22_A 432 YIS 434 (435)
T ss_dssp ---
T ss_pred eec
Confidence 543
No 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=286.10 Aligned_cols=286 Identities=13% Similarity=0.154 Sum_probs=226.0
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcCC---Cc---ceee
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVAS---GR---LLKK 117 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~---~~~~ 117 (451)
|+|+++.+++++ .|+......... ..|.+.|++++|+| ++++|++|+.||.|++||+.+ +. ....
T Consensus 35 f~~~~~~~~~~~-------~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN-------MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC-------GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc-------cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 788888887764 377555444444 56789999999999 999999999999999999977 43 2223
Q ss_pred eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec--ccC--CcCceeEEEEeecCCeeEEE
Q 012996 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG--HTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~i~~~~~~~~~~l~ 193 (451)
+ .|...|.+++|+|++++|++|+.||.|++||+................+.. +.. +...+.++.+...+++.+++
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 186 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLV 186 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEE
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEE
Confidence 3 599999999999999999999999999999995210000000000011111 122 56777888765544448999
Q ss_pred EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCC
Q 012996 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHS 269 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~ 269 (451)
+++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++|+.||.|++||++.. ..+..+. .|.
T Consensus 187 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~ 257 (437)
T 3gre_A 187 ALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---------VLIRSWSFGDH 257 (437)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---------EEEEEEBCTTC
T ss_pred EEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---------cEEEEEecCCC
Confidence 99999999999999999988886 5789999999999999999999999999999875 5556654 788
Q ss_pred cceeEEEEec-----CCEEEEEcCCCcEEEEeCCCCceEEEeec--------------------------CCCCeeEEEE
Q 012996 270 KAVTCLAYST-----GDLLISGSEDGMVRVWDPITHNIVRMFRL--------------------------AKGPVNNILV 318 (451)
Q Consensus 270 ~~v~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~v~~l~~ 318 (451)
..|++++|+| +.+|++|+.||.|++||+.+++++..+.. |...|++++|
T Consensus 258 ~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 337 (437)
T 3gre_A 258 APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISV 337 (437)
T ss_dssp EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEE
T ss_pred CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEE
Confidence 8999997665 55999999999999999999998888774 4456889999
Q ss_pred EecCceeeeccCCCCccccccCCCCCCCccc
Q 012996 319 VRRPLYLNLGSFSNPHTSSRRHGSQLPPPLD 349 (451)
Q Consensus 319 s~~~~~l~~~s~d~~i~iw~~~~~~~~~~~~ 349 (451)
+ ++++|++++.||.|++|++........+.
T Consensus 338 ~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 338 S-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp E-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred C-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 9 78999999999999999998776655443
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-36 Score=283.16 Aligned_cols=254 Identities=15% Similarity=0.203 Sum_probs=217.4
Q ss_pred eecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCC----------CcceeeeccccCCeeEEEEccCCc-EEEEeeCC
Q 012996 76 KSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVAS----------GRLLKKWHAHYRAVTCLVFSEDGS-FLISGSED 143 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d 143 (451)
...|.+.|++++|+|+ +.+|++++.+|.|++||+.+ ...+..+.+|...|.+++|+|++. +|++|+.|
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 3557899999999997 78999999999999999987 577788899999999999999888 99999999
Q ss_pred CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---ceeeeee-ccc
Q 012996 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS 219 (451)
Q Consensus 144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~ 219 (451)
|.|++|++.+..... ........+.+|...|.+++|++.+. .+|++++.||.|++||++++ +.+..+. |..
T Consensus 204 g~i~vwd~~~~~~~~----~~~~~~~~~~~h~~~v~~v~~~p~~~-~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 204 HTICLWDINATPKEH----RVIDAKNIFTGHTAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp SCEEEEETTSCCBGG----GEEECSEEECCCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred CeEEEEeCCCCCCCC----ceeccceeecCCCCCEeeeEEeCCCC-CEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999996521110 01112455678999999999999432 79999999999999999987 4555554 788
Q ss_pred ceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-C-CEEEEEcCCCcEEEEe
Q 012996 220 VIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-G-DLLISGSEDGMVRVWD 296 (451)
Q Consensus 220 ~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~s~~~dg~i~iwd 296 (451)
.|.+++|+|++. +|++|+.||.|++||++... .++..+..|...|++++|+| + .+|++++.||.|+|||
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK--------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence 999999999887 68899999999999998753 45677888999999999999 6 5799999999999999
Q ss_pred CCC--------------CceEEEeecCCCCeeEEEEEecCc-eeeeccCCCCccccccCCC
Q 012996 297 PIT--------------HNIVRMFRLAKGPVNNILVVRRPL-YLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 297 ~~~--------------~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s~d~~i~iw~~~~~ 342 (451)
+.. .+++..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 987 467888889999999999999999 8999999999999998753
No 102
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.7e-34 Score=267.04 Aligned_cols=310 Identities=13% Similarity=0.107 Sum_probs=247.8
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE 81 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~ 81 (451)
..++++++ .|+.|++||+.+++.+..+..+. .+.+++ |+|+++++++++..++.|++||..+++......+..
T Consensus 2 ~~l~vs~~-~d~~v~v~d~~~~~~~~~~~~~~----~~~~~~--~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 74 (391)
T 1l0q_A 2 TFAYIANS-ESDNISVIDVTSNKVTATIPVGS----NPMGAV--ISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS 74 (391)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEEECSS----SEEEEE--ECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEcC-CCCEEEEEECCCCeEEEEeecCC----CcceEE--ECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC
Confidence 35788888 99999999999999998887543 367888 999999885544333999999999888876666667
Q ss_pred CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE-EEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++.| ++++.|+.|++||+.+
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~------ 147 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVT------ 147 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT------
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC------
Confidence 999999999999875 4556799999999999888877654 568999999999977 6888899999999954
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS- 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 237 (451)
......+..+ ..+.+++|++++ ..+ ++++.++.|++||+++++....+.+...+.+++|+|+++++++++
T Consensus 148 -----~~~~~~~~~~-~~~~~~~~~~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 148 -----KAVINTVSVG-RSPKGIAVTPDG--TKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp -----TEEEEEEECC-SSEEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEE
T ss_pred -----CcEEEEEecC-CCcceEEECCCC--CEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEec
Confidence 2334444444 456899999988 555 677889999999999999988888888999999999999999988
Q ss_pred --CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE-EEEcCCCcEEEEeCCCCceEEEeecCCCCe
Q 012996 238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPV 313 (451)
Q Consensus 238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v 313 (451)
.++.|++||+.+. ..+..+..|. .+.+++|+| +++| ++++.|+.|++||+.+++.+..+..|..+.
T Consensus 220 ~~~~~~v~~~d~~~~---------~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~ 289 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTN---------KITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPY 289 (391)
T ss_dssp CSSCCEEEEEETTTT---------EEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred CcCCCcEEEEECCCC---------eEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCC
Confidence 6899999999875 4455565554 578999999 8766 677889999999999999999988776543
Q ss_pred e---EEE------------EEecC----------ceeeeccCCCCccccccCCCC
Q 012996 314 N---NIL------------VVRRP----------LYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 314 ~---~l~------------~s~~~----------~~l~~~s~d~~i~iw~~~~~~ 343 (451)
. .+. |+.+. ..|...+.|...++|++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 290 ASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp CCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred ccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 2 122 33221 345666778889999986543
No 103
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-35 Score=274.70 Aligned_cols=279 Identities=13% Similarity=0.113 Sum_probs=227.8
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCc---eeeee------------------------------------
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ---VEVKS------------------------------------ 77 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~---~~~~~------------------------------------ 77 (451)
..+.+++ |+++|++++++. + +.|++||+.+++ .....
T Consensus 5 ~p~~~v~--~s~dg~~l~~~~-~-~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T 2vdu_B 5 HPLQNLL--TSRDGSLVFAII-K-NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK 80 (450)
T ss_dssp CCCCEEE--ECSSSSEEEEEE-T-TEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred ccEEEEE--ecCCCCEEEEEe-C-CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence 3466777 999999766664 4 899999988776 22111
Q ss_pred -------------------cCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcC--CCcceeeec--cccCCeeEEEEccC
Q 012996 78 -------------------LPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVA--SGRLLKKWH--AHYRAVTCLVFSED 133 (451)
Q Consensus 78 -------------------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~ 133 (451)
.|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED 160 (450)
T ss_dssp -------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT
T ss_pred CccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC
Confidence 122369999999999996 899999999999999 888888876 56789999999999
Q ss_pred CcEEEEeeCCCcEEEeeCcchhhhhhhhccccc-ceecccCCcCceeEEEEeec---CCeeEEEEeeCCCcEEEEEcCCC
Q 012996 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHL-YLHSFTGHTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKG 209 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~~~~---~~~~~l~s~~~d~~i~iwd~~~~ 209 (451)
+++|++|+.+|.|.+|++.+.. ... ....+.+|...|.+++|+|+ + .+|++++.|+.|++||++++
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~sp~~~~~--~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIP--------EEKFTQEPILGHVSMLTDVHLIKDSDGH--QFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCC--------CSSCCCCCSEECSSCEEEEEEEECTTSC--EEEEEEETTSCEEEEEESCT
T ss_pred CCEEEEEeCCCcEEEEecCCcc--------cccccceeeecccCceEEEEEcCCCCCC--cEEEEEcCCCcEEEEECCCC
Confidence 9999999999999999996521 111 33467789999999999998 6 89999999999999999999
Q ss_pred ceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec---------------------
Q 012996 210 RLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--------------------- 266 (451)
Q Consensus 210 ~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--------------------- 266 (451)
+.+..+. |...|.+++|+ ++.+|++++.|+.|++||+.++.. +..+.
T Consensus 231 ~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (450)
T 2vdu_B 231 FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKN---------LSTFDYNSLIKPYLNDQHLAPPRFQN 300 (450)
T ss_dssp TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCE---------EEEEECHHHHGGGCCTTSBC------
T ss_pred ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcE---------eeeecchhhhhhhhhhcccccccccc
Confidence 8887643 78899999999 999999999999999999988642 22222
Q ss_pred ----cCCcceeEEEEec-CCEEEEEc-CCCcEEEEeC--CCC---ceEEEeecCCCCeeEEEEEecCceeeeccC-----
Q 012996 267 ----DHSKAVTCLAYST-GDLLISGS-EDGMVRVWDP--ITH---NIVRMFRLAKGPVNNILVVRRPLYLNLGSF----- 330 (451)
Q Consensus 267 ----~~~~~v~~~~~~~-~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~----- 330 (451)
.+...|.+++|+| +.+|++++ .|+.|++|++ .++ ..+..+..| +.|.+++|+|++.++++++.
T Consensus 301 ~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~ 379 (450)
T 2vdu_B 301 ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGV 379 (450)
T ss_dssp ----CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSS
T ss_pred cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCC
Confidence 2346799999999 99999998 8999999999 565 777888887 89999999997655555554
Q ss_pred -CCCccccccC
Q 012996 331 -SNPHTSSRRH 340 (451)
Q Consensus 331 -d~~i~iw~~~ 340 (451)
+..+.+|.+.
T Consensus 380 ~~~~i~v~~~~ 390 (450)
T 2vdu_B 380 QKNFAKFIEYN 390 (450)
T ss_dssp CCCSEEEEEEE
T ss_pred CCcceEEEEEE
Confidence 4557888765
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5.8e-36 Score=277.82 Aligned_cols=275 Identities=15% Similarity=0.223 Sum_probs=222.7
Q ss_pred EEEeecCCCCCCeEEEECccCce-eeeeecCCCCCCceEEecceEee-ccCcccCCCCCCccEEEEECCCCc--------
Q 012996 3 LLIASSSVADTGIGCWDLESGAE-QLRYKSCASPPHGLACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQ-------- 72 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~-------- 72 (451)
.++++++ .||.|+|||+..... ...+....+|...|.+++ |+| ++.++++++.| |.|++|++.++.
T Consensus 48 ~~~~~~~-~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~--~~p~~~~~l~s~s~d-g~v~vw~~~~~~~~~~~~~~ 123 (402)
T 2aq5_A 48 ALICEAS-GGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIA--WCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREP 123 (402)
T ss_dssp EEEBCCS-SSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEE--ECTTCTTEEEEEETT-SEEEEEECCTTCCSSCBCSC
T ss_pred EEEEEEc-CCCEEEEEECccCCCCCCCCceEecCCCCEEEEE--eCCCCCCEEEEEeCC-CeEEEEEccCCCCccccCCc
Confidence 3556677 899999999865432 233334456778899999 999 89999999988 999999998763
Q ss_pred eeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCCcceeee--ccccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 73 VEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASGRLLKKW--HAHYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 73 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
......|...|.+++|+|++ ++|++|+.||.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++|
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 203 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 23445688999999999998 69999999999999999999999999 8899999999999999999999999999999
Q ss_pred eCcchhhhhhhhcccccceecc-cCCcCc-eeEEEEeecCCeeEEEEe---eCCCcEEEEEcCCCce-e--eeeecccce
Q 012996 150 SLLTVFEECESQRASHLYLHSF-TGHTLR-ITDIVIGYGGVSATIVSA---SEDRTCKVWSLLKGRL-L--RNIVFPSVI 221 (451)
Q Consensus 150 d~~~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~i~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~-~--~~~~~~~~i 221 (451)
|+++ ...+..+ ..|... +.++.|++++ .++++| +.|+.|++||++++.. + ..+.+...+
T Consensus 204 d~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v 270 (402)
T 2aq5_A 204 EPRK-----------GTVVAEKDRPHEGTRPVHAVFVSEG--KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV 270 (402)
T ss_dssp ETTT-----------TEEEEEEECSSCSSSCCEEEECSTT--EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred eCCC-----------CceeeeeccCCCCCcceEEEEcCCC--cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence 9954 3345555 677765 8999999987 889998 7999999999988664 2 233467789
Q ss_pred eEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 222 DAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 222 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
.+++|+|++.+|++ |+.||.|++||+.+..+. ...+..+. |...|.+++|+| +.++++ .++.+++|++.+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~-----~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF-----LHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTC-----EEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc-----eEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCC
Confidence 99999999999975 557999999999886420 12222332 568999999999 777654 567999999987
Q ss_pred Cce
Q 012996 300 HNI 302 (451)
Q Consensus 300 ~~~ 302 (451)
+.+
T Consensus 343 ~~~ 345 (402)
T 2aq5_A 343 RKC 345 (402)
T ss_dssp TEE
T ss_pred CcE
Confidence 643
No 105
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.7e-35 Score=265.55 Aligned_cols=269 Identities=17% Similarity=0.202 Sum_probs=216.9
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-----eeeecCCCCeeEEEECC--CCcEEEEeccCCCEEE
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-----EVKSLPAEPIKPIAANS--HGTYIAGGGQSGDIYM 106 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-----~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 106 (451)
+|...|.+++ |+|++++|++++.| |.|++||+.++.. .....|...|.+++|+| ++++|++|+.||.|++
T Consensus 9 gH~~~v~~~~--~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVV--YDFYGRHVATCSSD-QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CCSSCEEEEE--ECSSSSEEEEEETT-SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred ccccceeEEE--EcCCCCEEEEeeCC-CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 5678899999 99999999999998 9999999986532 12245889999999999 6999999999999999
Q ss_pred EEcCCC---------cceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhccc--ccceecccC
Q 012996 107 WEVASG---------RLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRAS--HLYLHSFTG 173 (451)
Q Consensus 107 wd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~ 173 (451)
||+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++........... .........
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 999887 457778899999999999999 9999999999999999997643221111000 001112236
Q ss_pred CcCceeEEEEeec---CCeeEEEEeeCCCcEEEEEcCCCce--eeeee-cccceeEEEECCCC----CEEEEEeCCCcEE
Q 012996 174 HTLRITDIVIGYG---GVSATIVSASEDRTCKVWSLLKGRL--LRNIV-FPSVIDAIALDPAE----HVFYAGSRDGSIY 243 (451)
Q Consensus 174 ~~~~i~~i~~~~~---~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~-~~~~i~~~~~~~~~----~~l~~~~~dg~i~ 243 (451)
|...+.+++|+|+ + ..+++++.++.+.+|+...++. +..+. |...|.+++|+|++ .+|++|+.||.|+
T Consensus 166 ~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~ 243 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSP--EKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIR 243 (351)
T ss_dssp CSCCCEEEEECCCSSSC--CEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEE
T ss_pred cccceeEEEeccCCCCC--cEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEE
Confidence 8889999999997 5 8999999999998888877765 44443 78899999999998 8999999999999
Q ss_pred EEEccCCCCCC-------------------------------------CCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996 244 IAALNAESPST-------------------------------------SSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 244 i~d~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s 285 (451)
+||++...... .......+..+.+|...|++++|+| +.+|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 99998752211 0111256677889999999999999 999999
Q ss_pred EcCCCcEEEEeCCCCceEEEee
Q 012996 286 GSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 286 ~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
|+.||.|++||+.+++.+..+.
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EETTSCEEEEEECTTSCEEEEE
T ss_pred ecCCCcEEEEecCcCcchhhee
Confidence 9999999999999886655543
No 106
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-35 Score=270.59 Aligned_cols=259 Identities=14% Similarity=0.171 Sum_probs=213.3
Q ss_pred ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CcEEEEe
Q 012996 24 AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGG 98 (451)
Q Consensus 24 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~-~~~~~~~~v~~~~~~~~--~~~l~~~ 98 (451)
+.+..+.+ |...|.+++ |+|+++++++++.| |.|++|++.... .. ....|...|.+++|+|+ +++|++|
T Consensus 2 ~~~~~~~~---h~~~v~~~~--~s~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 75 (379)
T 3jrp_A 2 SMVVIANA---HNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 75 (379)
T ss_dssp ---CCEEE---CCCCEEEEE--ECSSSSEEEEEETT-SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE
T ss_pred CccEEecC---CcccEEEEE--EcCCCCEEEEEECC-CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEe
Confidence 34445554 557788988 99999999999988 999999997433 22 23458899999999987 9999999
Q ss_pred ccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 99 GQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
+.||.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||+.+ ........+..|
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~ 146 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---------NGTTSPIIIDAH 146 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT---------TSCCCEEEEECC
T ss_pred ccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC---------CCceeeEEecCC
Confidence 999999999999887 67788889999999999998 99999999999999999965 222344566789
Q ss_pred cCceeEEEEee-------------cCCeeEEEEeeCCCcEEEEEcCCCcee----eeee-cccceeEEEECCC---CCEE
Q 012996 175 TLRITDIVIGY-------------GGVSATIVSASEDRTCKVWSLLKGRLL----RNIV-FPSVIDAIALDPA---EHVF 233 (451)
Q Consensus 175 ~~~i~~i~~~~-------------~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~-~~~~i~~~~~~~~---~~~l 233 (451)
...|.+++|+| ++ .++++++.||.|++||++++... ..+. |...|.+++|+|+ +.+|
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKES--RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp TTCEEEEEECCCC----------CTT--CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCceEEEEEcCccccccccccCCCCC--CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 99999999999 45 89999999999999999876533 3333 7889999999999 8999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
++++.||.|++||+....... .........|...|++++|+| +.+|++++.||.|++|++......
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCC----EEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred EEEeCCCEEEEEeCCCCCccc----eeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 999999999999998863211 122333445889999999999 999999999999999998865433
No 107
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-36 Score=276.68 Aligned_cols=252 Identities=14% Similarity=0.138 Sum_probs=199.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEP 82 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~ 82 (451)
.++||++ .|++|+ |...++.+ .+|...|.+++ |+|+| .+ +.+.+|+.+.... ....|...
T Consensus 28 ~~iASas-~D~TV~--d~~~~~~l------~gh~~~v~~V~--FsPdg-------~~-~~~~~~~~~~~~~-~~~~~~~~ 87 (588)
T 2j04_A 28 TLYLTTF-PDISIG--QPKYAKDI------NCNSKNLFHVK--EFPLE-------FE-NKLDFELAQQNGL-LNSQPVCY 87 (588)
T ss_dssp CEEEECS-SSEEEE--EECCCSCC------SSBGGGTEEEE--EECCC-------CC-CTTTTSCCCSSCS-STTSCSCC
T ss_pred CEEEEEc-CCceee--ccccccee------cCCCccEEEEE--ECCCC-------Cc-ceEEEEeCCCceE-eecCCCCc
Confidence 3789999 999999 75555433 36788999999 99999 23 7888887654442 33345789
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC-----CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-----AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
|.+++|||+|.+||+++.||.|++||... ++..+. |.. .|.+++|+|||++|++|+.||+|++||+.++...
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~ 164 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSEN 164 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence 99999999999999999999999999544 666666 665 4999999999999999999999999999652100
Q ss_pred hhhhcccccceecc----cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee---eeee--cccceeEEEECC
Q 012996 158 CESQRASHLYLHSF----TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL---RNIV--FPSVIDAIALDP 228 (451)
Q Consensus 158 ~~~~~~~~~~~~~~----~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~--~~~~i~~~~~~~ 228 (451)
......+.++ .+|...|.+++|+|++ +++++.|++|++||+..+... ..+. |...|.+++|+
T Consensus 165 ----~~~~i~l~ti~~~~~gh~~~V~sVawSPdg----Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 165 ----TPEFYFESSIRLSDAGSKDWVTHIVWYEDV----LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp ----CCCCEEEEEEECSCTTCCCCEEEEEEETTE----EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred ----cccceeeeeeecccccccccEEEEEEcCCc----EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 0000124444 6788999999999873 889999999999999887742 3452 56789999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE--ec-CCEEEEEcCCCcEEEEeCC
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY--ST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
+..+++++ ++.|++||+.+.. ......+|...|..++| +| +..|++++.||+ ++|...
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred -CCEEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 68888887 6999999998863 22333389999999999 99 889999999999 999875
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-35 Score=278.63 Aligned_cols=258 Identities=17% Similarity=0.258 Sum_probs=206.9
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-----------ceeeecccc------------CCeeEEEEccCC
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-----------LLKKWHAHY------------RAVTCLVFSEDG 134 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 134 (451)
.+.+.|.+++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 356899999999999999999999999999998876 477888998 889999999988
Q ss_pred --cEEEEeeCCCcEEEeeCcchhhhhhhh---c-------------c------------cccceec-ccCCcCceeEEEE
Q 012996 135 --SFLISGSEDGCVRIWSLLTVFEECESQ---R-------------A------------SHLYLHS-FTGHTLRITDIVI 183 (451)
Q Consensus 135 --~~l~s~~~dg~i~vwd~~~~~~~~~~~---~-------------~------------~~~~~~~-~~~~~~~i~~i~~ 183 (451)
.+|++++.||.|++||+.+........ . . ....... ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 799999999999999996532110000 0 0 0000112 3679999999999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCC-Cceeeee--------ecccceeEEEECCCC-CEEEEEeCCCcEEEEEccCCCCC
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLK-GRLLRNI--------VFPSVIDAIALDPAE-HVFYAGSRDGSIYIAALNAESPS 253 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~--------~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~ 253 (451)
++++ .+|+++ .|+.|++||+++ ++.+..+ .|...|.+++|+|++ .+|++|+.||.|++||+++....
T Consensus 186 ~~~~--~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDY--ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTS--SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred cCCC--CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 9988 899998 799999999984 4444422 377889999999998 99999999999999999886421
Q ss_pred CCCCCceeeeeeccCCc------------ceeEEEEec-CCEEEEEcCCCcEEEEeCCC-CceEEEeecCCCC-------
Q 012996 254 TSSYGMHIIGSLSDHSK------------AVTCLAYST-GDLLISGSEDGMVRVWDPIT-HNIVRMFRLAKGP------- 312 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~------------~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~------- 312 (451)
. ..+..+.+|.. .|.+++|+| +.+|++++. |.|++||+.+ ++++..+..|...
T Consensus 263 ~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 263 D-----RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp C-----TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred c-----ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 1 11345566654 999999999 999999998 9999999997 8899999888642
Q ss_pred --------eeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 313 --------VNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 313 --------v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
+..++|+|++++|++++.||.|++|++.+...
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 33499999999999999999999999987654
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-36 Score=275.82 Aligned_cols=260 Identities=11% Similarity=-0.014 Sum_probs=210.0
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
..+|.+++ |+|||+++|+++.| ++|+ |...++.. ..|...|.+++|+|+| .++.+.+|+ ++..
T Consensus 15 ~~~v~sv~--~SpDG~~iASas~D-~TV~--d~~~~~~l--~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~ 77 (588)
T 2j04_A 15 EDWKNNLT--WARDGTLYLTTFPD-ISIG--QPKYAKDI--NCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN 77 (588)
T ss_dssp SSSSCCEE--ECTTSCEEEECSSS-EEEE--EECCCSCC--SSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred hccEEEEE--ECCCCCEEEEEcCC-ceee--ccccccee--cCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence 36677777 99999999999999 9999 75555433 5688999999999999 455555555 3332
Q ss_pred eeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC-----ceeEEEEeecCCe
Q 012996 116 KKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL-----RITDIVIGYGGVS 189 (451)
Q Consensus 116 ~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~i~~~~~~~~ 189 (451)
..+. .|...|.+++|+|+|..|++++.||.|++||... .+..+. |.. .|.+++|+|++
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------~l~~l~-~~~~~~~~sv~svafSPDG-- 141 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------MLTNLD-SKGNLSSRTYHCFEWNPIE-- 141 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------EEEECC-CSSCSTTTCEEEEEECSSS--
T ss_pred eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------eeeecc-CCCccccccEEEEEEcCCC--
Confidence 2332 4688999999999999999999999999999632 444555 555 59999999999
Q ss_pred eEEEEeeCCCcEEEEEcCCCce-------eeeee-----cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC
Q 012996 190 ATIVSASEDRTCKVWSLLKGRL-------LRNIV-----FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~-------~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 257 (451)
++|++|+.||+|++||+.++.. +..+. |...|.+++|+|+| +++++.|+.|++||+......
T Consensus 142 ~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~---- 215 (588)
T 2j04_A 142 SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ---- 215 (588)
T ss_dssp SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC----
T ss_pred CEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc----
Confidence 8999999999999999998753 45542 45689999999999 888999999999999876410
Q ss_pred Cceeeeee-ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE--EecCceeeeccCCCCc
Q 012996 258 GMHIIGSL-SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV--VRRPLYLNLGSFSNPH 334 (451)
Q Consensus 258 ~~~~~~~~-~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~--s~~~~~l~~~s~d~~i 334 (451)
....++ .+|...|.+++|+ +..||+++ ++.|++||+.+++......+|.+.|..++| +|++..|++++.||.
T Consensus 216 --~~~~tL~~~h~~~V~svaFs-g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~- 290 (588)
T 2j04_A 216 --PVSRMIQNASRRKITDLKIV-DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY- 290 (588)
T ss_dssp --CCEEEEECCCSSCCCCEEEE-TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-
T ss_pred --cceeeecccccCcEEEEEEE-CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-
Confidence 123345 4788999999999 89999997 699999999988774444479999999999 999999999998888
Q ss_pred ccccc
Q 012996 335 TSSRR 339 (451)
Q Consensus 335 ~iw~~ 339 (451)
++|..
T Consensus 291 klw~~ 295 (588)
T 2j04_A 291 KVLLE 295 (588)
T ss_dssp EEEES
T ss_pred EEEee
Confidence 55553
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-35 Score=294.04 Aligned_cols=253 Identities=18% Similarity=0.160 Sum_probs=216.1
Q ss_pred eecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeC
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~ 151 (451)
...|.+.|++++|+|++++|++|+.||.|++||+. ++..+..+.+|.++|++++|+|+ +++|++|+.||.|++||+
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999999999999999999998 55778889999999999999987 999999999999999999
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--e-eecccceeEEEECC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--N-IVFPSVIDAIALDP 228 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~-~~~~~~i~~~~~~~ 228 (451)
.+ ........+.+|...|.+++|+|+..+..+++++.||.|++||++++.... . ..+...|.+++|+|
T Consensus 85 ~~---------~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 85 EN---------GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp ET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CC---------CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecC
Confidence 65 222356677889999999999998222899999999999999998874332 2 23788999999999
Q ss_pred -------------CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecC----CEEEEEcCCCc
Q 012996 229 -------------AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTG----DLLISGSEDGM 291 (451)
Q Consensus 229 -------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~l~s~~~dg~ 291 (451)
++.++++|+.||.|++||++..... ......+.+|...|++++|+|. .+|++|+.||.
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~ 230 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT 230 (753)
T ss_dssp CC---------CGGGCCEEEEETTSCEEEEEEETTTTE-----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC
T ss_pred cccccccccccCCCCCEEEEEECCCeEEEEeccCCccc-----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE
Confidence 5899999999999999999876421 2456678899999999999983 68999999999
Q ss_pred EEEEeCCCCc-----eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 292 VRVWDPITHN-----IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 292 i~iwd~~~~~-----~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
|++||+.++. .+.....|.+.|++++|+|+|++|++++.||.|++|++...
T Consensus 231 I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 231 CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9999998864 33444568889999999999999999999999999998843
No 111
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.5e-34 Score=262.39 Aligned_cols=261 Identities=15% Similarity=0.131 Sum_probs=223.1
Q ss_pred EEeecCCCCCCeEEEECccCc---eeeeeecCCCCCCceEEecceEeeccC-cccCCCCCCccEEEEEC-CCCceeeeec
Q 012996 4 LIASSSVADTGIGCWDLESGA---EQLRYKSCASPPHGLACVGQRFLASSQ-LREQPSASSGSILYWSW-SKPQVEVKSL 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~-~~~~~~~~~~ 78 (451)
+|++++ .||.|+|||+.++. ....+. .|...|.+++ |+|+++ ++++++.+ |.|++||+ .++.......
T Consensus 25 ~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~---~~~~~v~~~~--~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~ 97 (342)
T 1yfq_A 25 LLLITS-WDGSLTVYKFDIQAKNVDLLQSL---RYKHPLLCCN--FIDNTDLQIYVGTVQ-GEILKVDLIGSPSFQALTN 97 (342)
T ss_dssp EEEEEE-TTSEEEEEEEETTTTEEEEEEEE---ECSSCEEEEE--EEESSSEEEEEEETT-SCEEEECSSSSSSEEECBS
T ss_pred EEEEEc-CCCeEEEEEeCCCCccccceeee---ecCCceEEEE--ECCCCCcEEEEEcCC-CeEEEEEeccCCceEeccc
Confidence 678888 99999999999887 233333 4667899999 999999 99999988 99999999 8888776677
Q ss_pred --CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------CcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEE
Q 012996 79 --PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVR 147 (451)
Q Consensus 79 --~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 147 (451)
|...|.+++|+| +++|++++.||.|++||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|+
T Consensus 98 ~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~ 173 (342)
T 1yfq_A 98 NEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQ 173 (342)
T ss_dssp CCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEE
T ss_pred cCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEE
Confidence 899999999999 99999999999999999988 77777776 89999999999876 99999999999
Q ss_pred EeeCcc-hhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCC------ceeeeee-cc
Q 012996 148 IWSLLT-VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKG------RLLRNIV-FP 218 (451)
Q Consensus 148 vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~-~~ 218 (451)
+||+++ .. .........|...+.+++|++ ++ .++++++.||.|++|++... +....+. +.
T Consensus 174 i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 174 WFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQ--EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp EEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGG--CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred EEECCcccc---------ccceeeecCCCCceeEEEECCCCC--CEEEEEecCCcEEEEEEcCCCcccccccceeeeccc
Confidence 999954 21 112334456888999999999 87 89999999999999999876 6666665 43
Q ss_pred c---------ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEEc
Q 012996 219 S---------VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 219 ~---------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~~ 287 (451)
. .|.+++|+|++++|++++.||.|++||+.+. ..+..+.+| ...|++++ | +.+|++|+
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---------KKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---------hHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 3 8999999999999999999999999999876 567778888 99999999 7 99999999
Q ss_pred CCCc-EEEEeC
Q 012996 288 EDGM-VRVWDP 297 (451)
Q Consensus 288 ~dg~-i~iwd~ 297 (451)
.||. .+.|..
T Consensus 312 ~Dg~~~~~~~~ 322 (342)
T 1yfq_A 312 SDDTFKTNAAI 322 (342)
T ss_dssp ECTHHHHCSSS
T ss_pred cCCcccccccc
Confidence 9998 655553
No 112
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=9.7e-35 Score=252.25 Aligned_cols=271 Identities=11% Similarity=0.083 Sum_probs=197.8
Q ss_pred eEEEeecCCCCCCeEEEECccC---ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec
Q 012996 2 ELLIASSSVADTGIGCWDLESG---AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL 78 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~ 78 (451)
|..+++++ ..+|++|+..++ +.++++..+. ..|..+. ++|+...|+...- -..
T Consensus 54 ~~~~~~~~--~~~v~lw~~~~~~~~~~~~~~~~~~---~~v~~~~--~~~~~~~~~~~~~-----------------~~~ 109 (356)
T 2w18_A 54 EPCIITAC--EDVVSLWKALDAWQWEKLYTWHFAE---VPVLQIV--PVPDVYNLVCVAL-----------------GNL 109 (356)
T ss_dssp EEEEEEEE--SSEEEEEEESSSSBEEEEEEEECCS---SCEEEEC--CCTTCCSCEEEEE-----------------CSS
T ss_pred ccEEEEec--cceEEEcccCCCccceeeEEEeccC---ceeEEEE--EcCcccceeeeee-----------------ccc
Confidence 67788888 679999999998 7777777654 4566666 8887664433221 112
Q ss_pred CCCCeeEEEECCC----CcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 79 PAEPIKPIAANSH----GTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 79 ~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
+...|.+++|+|+ +.++++++.+ +.+|++.+++.+.+ ..+|.+.|..++|+|+|+
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~------------------ 169 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGG------------------ 169 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSC------------------
T ss_pred cccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCc------------------
Confidence 3467999999999 9999998754 77887654444443 234444444444444443
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c---ccceeEEEECC
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDP 228 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~---~~~i~~~~~~~ 228 (451)
.+..+.+|...++.++|++ ++++.+|++++.|++|+|||+.+++.+..+. + ...+.+++|+|
T Consensus 170 -------------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp 236 (356)
T 2w18_A 170 -------------GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE 236 (356)
T ss_dssp -------------EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE
T ss_pred -------------eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC
Confidence 3334556888889999999 5555899999999999999999999999986 3 23577889999
Q ss_pred CCCEE------------EEEeCCCcEEEEEccCCCCCCCCCCceeeeee-----ccCCcceeEEEEecCCEEEEEcCCCc
Q 012996 229 AEHVF------------YAGSRDGSIYIAALNAESPSTSSYGMHIIGSL-----SDHSKAVTCLAYSTGDLLISGSEDGM 291 (451)
Q Consensus 229 ~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~s~~~dg~ 291 (451)
++.++ ++|+.|++|++||..++. .+..+ .+|...+.+..++ +.++++|+.||+
T Consensus 237 dG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk---------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgT 306 (356)
T 2w18_A 237 MGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL---------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGT 306 (356)
T ss_dssp TTEEEEEEC------------CCEEEEEEETTTTE---------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSC
T ss_pred CCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE---------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCc
Confidence 99887 567889999999998763 22222 4666655544444 789999999999
Q ss_pred EEEEeCCCCceEEEeecCCCCee-EEEEEecCceeeeccCCCCcccccc
Q 012996 292 VRVWDPITHNIVRMFRLAKGPVN-NILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
|+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|++|+.
T Consensus 307 IkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999999999999999887655 6899999999999999999999985
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.6e-34 Score=266.36 Aligned_cols=299 Identities=13% Similarity=0.103 Sum_probs=239.6
Q ss_pred CCCCeEEEECc--cC--ceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee------ecCC
Q 012996 11 ADTGIGCWDLE--SG--AEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK------SLPA 80 (451)
Q Consensus 11 ~dg~i~vwd~~--~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~------~~~~ 80 (451)
.++.+.||.+. ++ +.+..+..+ ..+.+++ |+|++.++++++.+ +.|++||..+++.... ..|.
T Consensus 97 ~~~~~~l~~~d~~~~~~~~~~~~~~~----~~~~~~~--~s~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 97 EELNEKLIALDKEGITHRFISRFKTG----FQPKSVR--FIDNTRLAIPLLED-EGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp GGGTTCEEECCBTTCSEEEEEEEECS----SCBCCCE--ESSSSEEEEEBTTS-SSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred CCCceEEEEECCCCCcceEEEEEcCC----CCceEEE--EeCCCeEEEEeCCC-CeEEEEECCCCeEeeecCcccccccC
Confidence 56645555543 34 455555433 2344566 99966666666665 9999999998776542 2467
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE-eeCCCcEEEeeCcchhhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS-GSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~ 159 (451)
..|.+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.+++ ++.|+.|++||+++
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~------ 243 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT------ 243 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT------
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC------
Confidence 78999999999999999999999999999999999999899999999999999988854 45799999999954
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEee--------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
...+..+.. ...+.+++|++++ ..+++++ .|+.|++||+.+++....+.+...+.+++|+|+++
T Consensus 244 -----~~~~~~~~~-~~~~~~~~~~~~g--~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 244 -----KLEIRKTDK-IGLPRGLLLSKDG--KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN 315 (433)
T ss_dssp -----TEEEEECCC-CSEEEEEEECTTS--SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred -----CcEEEEecC-CCCceEEEEcCCC--CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence 223344443 4458999999988 7888877 58899999999999888887888899999999997
Q ss_pred EE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC---------------CCcEEE
Q 012996 232 VF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE---------------DGMVRV 294 (451)
Q Consensus 232 ~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~---------------dg~i~i 294 (451)
.+ ++++.++.|++||+.+. .....+. +...+.+++|+| +.++++++. ||.|++
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~---------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~ 385 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEK---------KVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYV 385 (433)
T ss_dssp EEEEEETTTTEEEEEETTTT---------EEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEE
T ss_pred EEEEEecCCCEEEEEECCCC---------cEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEE
Confidence 55 56689999999999875 3344443 677899999999 888888776 579999
Q ss_pred EeCCCCceEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccCC
Q 012996 295 WDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHG 341 (451)
Q Consensus 295 wd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~ 341 (451)
||+.+++.+..+.. ...+.+++|+|+|++|++++ .|+.+++|++.+
T Consensus 386 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 386 IDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 99999999998887 45799999999999998776 599999999764
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=288.05 Aligned_cols=251 Identities=15% Similarity=0.193 Sum_probs=210.7
Q ss_pred CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCc--ee-eeecCCCCeeEEEECCC--CcEEEEeccCCCEEEE
Q 012996 33 ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ--VE-VKSLPAEPIKPIAANSH--GTYIAGGGQSGDIYMW 107 (451)
Q Consensus 33 ~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~--~~-~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw 107 (451)
.+|...|.+++ |+|+++++++++.| |.|++||+.++. .. ....|.++|.+++|+|+ +++|++|+.||.|++|
T Consensus 6 ~gH~~~V~~l~--~s~dg~~latg~~d-g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 6 NAHNELIHDAV--LDYYGKRLATCSSD-KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp --CCCCEEEEC--CCSSSCCEEEEETT-TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ccCcceeEEEE--ECCCCCeEEEEECC-CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 35678899999 99999999999988 999999987443 22 33458899999999988 9999999999999999
Q ss_pred EcCCCc--ceeeeccccCCeeEEEEccC--CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 108 EVASGR--LLKKWHAHYRAVTCLVFSED--GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 108 d~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
|+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||+++ ........+.+|...|.+++|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~---------~~~~~~~~~~~~~~~v~~l~~ 153 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE---------NGTTSPIIIDAHAIGVNSASW 153 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCS---------SSCCCCEEEECCSSCEEEEEE
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeec---------CCCcceeEeecCCCceEEEEe
Confidence 999886 67778899999999999998 99999999999999999966 223344556789999999999
Q ss_pred eecC-----------CeeEEEEeeCCCcEEEEEcCCCc----eeeeee-cccceeEEEECCC---CCEEEEEeCCCcEEE
Q 012996 184 GYGG-----------VSATIVSASEDRTCKVWSLLKGR----LLRNIV-FPSVIDAIALDPA---EHVFYAGSRDGSIYI 244 (451)
Q Consensus 184 ~~~~-----------~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~-~~~~i~~~~~~~~---~~~l~~~~~dg~i~i 244 (451)
+|.. ++..+++|+.||.|++||++++. ....+. |...|.+++|+|+ +.+|++|+.||.|++
T Consensus 154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp CCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred cCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 9841 12899999999999999998873 334444 7889999999999 999999999999999
Q ss_pred EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
||+....... .........|...|++++|+| +.+|++|+.||.|++||+.+
T Consensus 234 wd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 234 WTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9998863211 112334456889999999999 99999999999999999874
No 115
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-33 Score=257.28 Aligned_cols=289 Identities=9% Similarity=0.020 Sum_probs=210.1
Q ss_pred EEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-
Q 012996 17 CWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI- 95 (451)
Q Consensus 17 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l- 95 (451)
||++.+...+..+. .|...|.+++ |+|+|+++++++.+ .+++|+..+........+ ..+..+++.++++.+
T Consensus 3 i~s~~~~~~~~~~~---~h~~~V~~v~--fs~dg~~la~g~~~--~~~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPEN---HVSNPVTDYE--FNQDQSCLILSTLK--SFEIYNVHPVAHIMSQEM-RHLSKVRMLHRTNYVA 74 (355)
T ss_dssp -------------------CCCCCEEE--ECTTSSEEEEECSS--EEEEEEETTEEEEEEEEC-SCCCEEEECTTSSEEE
T ss_pred cccccccCCccccc---cCCCceEEEE--ECCCCCEEEEEcCC--EEEEEecCCcceeeeeec-CCeEEEEEcCCCCEEE
Confidence 56666666665444 4557788888 99999999988765 478999887765544333 358889999988887
Q ss_pred EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996 96 AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (451)
Q Consensus 96 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (451)
++|+.|+.|++||+.+++.+..+. |...|.++.|+++. ++++ .|+.|++||+.+. ...+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~----------~~~~~~~~~-- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNP----------WKRITDDIR-- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTT----------CCBSSCCEE--
T ss_pred EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCC----------ceeeEEecc--
Confidence 567888999999999999988886 67799999999764 4444 4789999999652 122333332
Q ss_pred CceeEEEEeecCCeeEEEE-eeCCCcEEEEEcCCCc---------------e-eeeee-cccceeEEEECCCCCEEEEEe
Q 012996 176 LRITDIVIGYGGVSATIVS-ASEDRTCKVWSLLKGR---------------L-LRNIV-FPSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 176 ~~i~~i~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~---------------~-~~~~~-~~~~i~~~~~~~~~~~l~~~~ 237 (451)
+...+++++ . .+.++ |+.||.|++||+.++. + +..+. |...|.+++|+|++.+|++|+
T Consensus 139 -~~~~~~~s~-~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 139 -FGGVCEFSN-G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEEEEET-T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -CCceEEEEc-c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 333445555 2 34444 7899999999999865 1 44444 889999999999999999999
Q ss_pred CCCc-EEEEEccCCCCCCCCCCceeeeeec-c-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE--Ee-----
Q 012996 238 RDGS-IYIAALNAESPSTSSYGMHIIGSLS-D-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR--MF----- 306 (451)
Q Consensus 238 ~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~--~~----- 306 (451)
.||. |++||++++ ..+..+. + |...|++++|+| +.+|++++.|++|++||+..+.... .+
T Consensus 215 ~d~~~v~iwd~~~~---------~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 215 QDGTIIRVFKTEDG---------VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp TTCSEEEEEETTTC---------CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CCCCEEEEEECCCC---------cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 9998 999999986 4566676 5 999999999999 9999999999999999997653211 11
Q ss_pred -------------e---cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 307 -------------R---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 307 -------------~---~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
. .+..+...++|++++++|++++.||.+.+|++...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 11223477999999999999999999999997643
No 116
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=5e-35 Score=270.12 Aligned_cols=287 Identities=9% Similarity=0.027 Sum_probs=200.9
Q ss_pred CCceEEecceEeeccCcccCCCCCCccEEEEECCCCc------e----eeeecCCCCeeEEEE-----------------
Q 012996 36 PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQ------V----EVKSLPAEPIKPIAA----------------- 88 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~------~----~~~~~~~~~v~~~~~----------------- 88 (451)
+..+.... .+|++..+++++.+ +.|.+|+..... . .....+..++..+.|
T Consensus 18 p~~~~w~~--~~~~~~~l~a~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 18 PYTTTWCS--QSPSCSNLLAIGHD-TGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp EEEEEECT--TSGGGTTEEEEEES-SEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CeEEEEeC--CCCCCCCEEEEECC-CCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 34444433 45666666666666 778888753211 0 011112333444433
Q ss_pred ---CCCCcEEEEeccCCCEEEEEcCCCcce-----eeeccccCCeeEEEEcc--------CCcEEEEeeCCCcEEEeeCc
Q 012996 89 ---NSHGTYIAGGGQSGDIYMWEVASGRLL-----KKWHAHYRAVTCLVFSE--------DGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 89 ---~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~s~~~dg~i~vwd~~ 152 (451)
++++.+|++|+.|++|+|||+.+++.. ..+.+|.+.|++++|+| |+++|++|+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 445678999999999999999887543 34689999999999998 78999999999999999994
Q ss_pred chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-----------------
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI----------------- 215 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------- 215 (451)
+ ......+..|...+.+++|+|++. .+|++++.|++|++||+++++.....
T Consensus 175 ~-----------~~~~~~~~~~~~~v~~v~~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 175 D-----------EGPILAGYPLSSPGISVQFRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp T-----------TEEEEEEEECSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred C-----------CceeeeecCCCCCcEEEEECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 4 334556677899999999999763 58999999999999999887644322
Q ss_pred ---------ecccceeEEEEC-CCCCEEEEEeCCCcEEEEEccCCCCCCCCCC----------ceeeeeeccCCcceeEE
Q 012996 216 ---------VFPSVIDAIALD-PAEHVFYAGSRDGSIYIAALNAESPSTSSYG----------MHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 216 ---------~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~v~~~ 275 (451)
.+...+.++.|+ |++..+++++.|+.+++||+........... .........+...+..+
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 134567788886 7999999999999999999976542111000 00111222223333333
Q ss_pred EEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 276 AYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 276 ~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.+.+ +.++++|+.||+|++||+.+++++..+..|..+|.+++|+|||++||+++.+|. .+|+
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv-~lvr 386 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSV-LLTR 386 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEE-EEEE
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEE
Confidence 3333 346677889999999999999999999999999999999999999999987775 4444
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=257.23 Aligned_cols=269 Identities=10% Similarity=0.125 Sum_probs=219.2
Q ss_pred EEEeecCCCCCCeEEEECcc-Ccee-eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC
Q 012996 3 LLIASSSVADTGIGCWDLES-GAEQ-LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~ 80 (451)
.+|++|+ .||.|+|||+.+ +..+ ..+.. |...|.+++ |+|+++++++++.| |.|++||+.++.......|.
T Consensus 55 ~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~---h~~~v~~~~--~~~~~~~l~s~~~d-g~v~iwd~~~~~~~~~~~~~ 127 (368)
T 3mmy_A 55 NFLIAGS-WANDVRCWEVQDSGQTIPKAQQM---HTGPVLDVC--WSDDGSKVFTASCD-KTAKMWDLSSNQAIQIAQHD 127 (368)
T ss_dssp EEEEEEE-TTSEEEEEEECTTSCEEEEEEEE---CSSCEEEEE--ECTTSSEEEEEETT-SEEEEEETTTTEEEEEEECS
T ss_pred eEEEEEC-CCCcEEEEEcCCCCceeEEEecc---ccCCEEEEE--ECcCCCEEEEEcCC-CcEEEEEcCCCCceeecccc
Confidence 6899999 999999999997 5554 45554 557788888 99999999999988 99999999999888778899
Q ss_pred CCeeEEEE--CCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 81 EPIKPIAA--NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 81 ~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
..|.+++| +|++++|++++.||.|++||+.+++.+..+..|. .+.++.+. +..+++++.++.+.+|++...
T Consensus 128 ~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~---- 200 (368)
T 3mmy_A 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQ---- 200 (368)
T ss_dssp SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSS----
T ss_pred CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccc----
Confidence 99999999 9999999999999999999999999998887664 56666666 457889999999999999652
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCC--eeEEEEeeCCCcEEEEEcCCC---ceeeeee-ccc------------c
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGV--SATIVSASEDRTCKVWSLLKG---RLLRNIV-FPS------------V 220 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~--~~~l~s~~~d~~i~iwd~~~~---~~~~~~~-~~~------------~ 220 (451)
..........+...+.++.+.+... ...+++++.||.|++||++.. .....+. +.. .
T Consensus 201 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (368)
T 3mmy_A 201 -----PSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYA 275 (368)
T ss_dssp -----CEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECC
T ss_pred -----cchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccc
Confidence 1112222233445556666665542 244999999999999999887 4444544 322 6
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 221 IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
|.+++|+|++++|++|+.||.|++||+.+. ..+..+.+|...|++++|+| +.+|++++.|+..+.|++.+
T Consensus 276 v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDAR---------TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEEEEECTTTCCEEEEETTSCEEEEETTTT---------EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred eEEEEEecCCCEEEEEccCCeEEEEECCCC---------cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999999999999999999999999999876 56778889999999999999 99999999998666665443
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-34 Score=258.36 Aligned_cols=266 Identities=7% Similarity=0.019 Sum_probs=203.6
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC---------CCccee
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA---------SGRLLK 116 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~ 116 (451)
+.+++..+++++.| |.|++||+.+++...... ...|.++.|+|+ +++++.|+.|++|+.. +++.+.
T Consensus 44 ~~~d~~~l~sg~~D-g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCED-GALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEET-TEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCC-CcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 55678888888888 899999988776544433 466778888887 8888888888888654 445444
Q ss_pred eec-cccCCeeEEEEcc--CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc-cCCcCceeEEEEeecCCeeEE
Q 012996 117 KWH-AHYRAVTCLVFSE--DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 117 ~~~-~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l 192 (451)
.+. +|.+.|.+++|+| ++++|++++.||.|++||++++ ...... ..|...+.+++|+|++ .++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-----------~~~~~~~~~~~~~i~~~~~~pdg--~~l 185 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-----------SQYIVHSAKSDVEYSSGVLHKDS--LLL 185 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS-----------CEEEEECCCSSCCCCEEEECTTS--CEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC-----------cEEEEEecCCCCceEEEEECCCC--CEE
Confidence 443 6778999999999 9999999999999999999652 223333 3456689999999988 899
Q ss_pred EEeeCCCcEEEEEcCCCcee-eeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 193 VSASEDRTCKVWSLLKGRLL-RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~-~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
++|+.||.|++||+++++.+ ..+. |...|.+++|+|++.+|++++ ++.|++||++...... .+..+..|.
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~ 258 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPE 258 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC--
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce------eeccccccc
Confidence 99999999999999999877 5554 689999999999999999999 5599999999865321 122222344
Q ss_pred ccee--EEEEec-CCEEEEEcC-CCcEEEEeCCCCceEEEeecCCCCeeEEEEEe---cCceeeeccCCCCccccccC
Q 012996 270 KAVT--CLAYST-GDLLISGSE-DGMVRVWDPITHNIVRMFRLAKGPVNNILVVR---RPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 270 ~~v~--~~~~~~-~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s~d~~i~iw~~~ 340 (451)
..+. +++|+| +.+|++++. |+.|++|++......... .++..+.|+| +...+++++.||.+.++-..
T Consensus 259 ~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 259 FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 4444 699999 999999988 999999998765543333 5778888998 88899999999998887544
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-33 Score=260.24 Aligned_cols=237 Identities=14% Similarity=0.149 Sum_probs=196.1
Q ss_pred ceEEecceEeeccCcc-cCCCCCCccEEEEECC--CCceeeee---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 38 GLACVGQRFLASSQLR-EQPSASSGSILYWSWS--KPQVEVKS---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l-~~~~~d~g~i~vw~~~--~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
.|.+++ |+|++++| ++++.| |.|++||+. ++...... .+...|.+++|+|++++|++|+.+|.|++|++.+
T Consensus 104 ~v~~~~--~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLR--LTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CEEEEE--ECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred ceEEEE--EcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 688898 99999997 677676 999999998 65544332 4678999999999999999999999999999988
Q ss_pred Cccee----eeccccCCeeEEEEccC---CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEE
Q 012996 112 GRLLK----KWHAHYRAVTCLVFSED---GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVI 183 (451)
Q Consensus 112 ~~~~~----~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~ 183 (451)
+.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+.+ ...+.. +.+|...|.+++|
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~-----------~~~~~~~~~~h~~~v~~~~~ 249 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ-----------CFIVDKWLFGHKHFVSSICC 249 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-----------TTCEEEECCCCSSCEEEEEE
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-----------CceeeeeecCCCCceEEEEE
Confidence 87554 77889999999999999 99999999999999999954 233444 5689999999999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec--------------------------ccceeEEEECCCCCEEEEEe
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF--------------------------PSVIDAIALDPAEHVFYAGS 237 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--------------------------~~~i~~~~~~~~~~~l~~~~ 237 (451)
+ ++ .+|++++.|+.|++||+.+++.+..+.. ...+.+++|+|+++++++++
T Consensus 250 s-d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~ 326 (450)
T 2vdu_B 250 G-KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV 326 (450)
T ss_dssp C-ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred C-CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence 9 77 8999999999999999999998877752 24688999999999999999
Q ss_pred -CCCcEEEEEc--cCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcC-------CCcEEEEeCC
Q 012996 238 -RDGSIYIAAL--NAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-------DGMVRVWDPI 298 (451)
Q Consensus 238 -~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-------dg~i~iwd~~ 298 (451)
.++.|++|++ .... ....+..+..| ..|.+++|+|+.++++.+. +..|.+|.+.
T Consensus 327 ~~d~~i~iw~~~~~~~~------~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 327 EATKCIIILEMSEKQKG------DLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp TTCSEEEEEEECSSSTT------CEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCCCeEEEEEeccCCCC------ceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 8999999999 3321 12556667777 8899999999545555433 4558888754
No 120
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=5.2e-33 Score=260.01 Aligned_cols=255 Identities=14% Similarity=0.211 Sum_probs=208.0
Q ss_pred CCCCceEEecceEeec-cCcccCCCCCCccEEEEECCC----------Cc-eeeeecCCCCeeEEEECCCCc-EEEEecc
Q 012996 34 SPPHGLACVGQRFLAS-SQLREQPSASSGSILYWSWSK----------PQ-VEVKSLPAEPIKPIAANSHGT-YIAGGGQ 100 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~-~~~l~~~~~d~g~i~vw~~~~----------~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 100 (451)
.|...|.+++ |+|+ +.++++++.+ |.|++|++.+ .. ......|...|.+++|+|++. +|++|+.
T Consensus 126 ~h~~~v~~l~--~~p~~~~~lat~~~d-g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 126 NHEGEVNRAR--YMPQNACVIATKTPS-SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EESSCCSEEE--EETTEEEEEEEECSS-SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred cCCCcEEEEE--ECCCCCcEEEEECCC-CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 3556777788 9997 6788888877 9999999875 22 223356888999999999988 9999999
Q ss_pred CCCEEEEEcCCCcc-------eeeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc
Q 012996 101 SGDIYMWEVASGRL-------LKKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT 172 (451)
Q Consensus 101 dg~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 172 (451)
||.|++|++.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||+++. .....+..+.
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--------~~~~~~~~~~ 274 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--------NTSKPSHTVD 274 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--------CSSSCSEEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--------CCCcceeEee
Confidence 99999999987432 456678999999999999 7889999999999999999752 1124555667
Q ss_pred CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-cccceeEEEECCCCC-EEEEEeCCCcEEEEEccC
Q 012996 173 GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-FPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 249 (451)
.|...|++++|++++. .++++|+.||.|++||+++ +..+..+. |...|.+++|+|++. +|++++.||.|++||+..
T Consensus 275 ~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred cCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 8999999999999873 4799999999999999998 45666666 889999999999885 699999999999999987
Q ss_pred CCCCCC-----CCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCC
Q 012996 250 ESPSTS-----SYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 250 ~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~ 300 (451)
...... ......+..+.+|...|++++|+| +. +|++++.||.|+||++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 431110 001245667788999999999999 77 8999999999999998653
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=4.2e-32 Score=250.95 Aligned_cols=266 Identities=14% Similarity=0.111 Sum_probs=219.5
Q ss_pred cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEE
Q 012996 52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVF 130 (451)
Q Consensus 52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 130 (451)
.+++++.+ +.|++||+.+++......+...+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus 4 l~vs~~~d-~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 4 AYIANSES-DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEEETTT-TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEEcCCC-CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 34555555 99999999988877666666779999999999977 677789999999999999988887655 8999999
Q ss_pred ccCCcEEEE-eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC
Q 012996 131 SEDGSFLIS-GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK 208 (451)
Q Consensus 131 ~~~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~ 208 (451)
+|++++|+. ++.++.|++||+.+ ...+..+. +...+.+++|++++ +.+ ++++.++.|++||+.+
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~~-----------~~~~~~~~-~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTTS-----------NTVAGTVK-TGKSPLGLALSPDG--KKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETTT-----------TEEEEEEE-CSSSEEEEEECTTS--SEEEEEETTTTEEEEEETTT
T ss_pred CCCCCEEEEEECCCCEEEEEECCC-----------CeEEEEEe-CCCCcceEEECCCC--CEEEEEeCCCCEEEEEECCC
Confidence 999998764 45679999999955 22333344 34467899999988 555 7888899999999999
Q ss_pred CceeeeeecccceeEEEECCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE
Q 012996 209 GRLLRNIVFPSVIDAIALDPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG 286 (451)
Q Consensus 209 ~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~ 286 (451)
++.+..+.....+.+++|+|+++.+ ++++.++.|++||+.+. .....+ .+...+.+++|+| +.+|+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~~-~~~~~~~~~~~~~~g~~l~~~ 217 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---------SVIDTV-KVEAAPSGIAVNPEGTKAYVT 217 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEE-ECSSEEEEEEECTTSSEEEEE
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---------eEEEEE-ecCCCccceEECCCCCEEEEE
Confidence 9998888877788999999999887 56678899999999875 333333 3566889999999 8888888
Q ss_pred c---CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCCCCC
Q 012996 287 S---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 287 ~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~~~~ 344 (451)
+ .++.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.+++|+.....+
T Consensus 218 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 218 NVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp EECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcE
Confidence 7 68999999999999999988765 57899999999987 6778999999999886544
No 122
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.9e-32 Score=244.52 Aligned_cols=254 Identities=12% Similarity=0.115 Sum_probs=188.8
Q ss_pred EEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEE-EEeeC
Q 012996 65 YWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFL-ISGSE 142 (451)
Q Consensus 65 vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~ 142 (451)
+|++.+.... ....|...|.+++|+|||++|++|+.+| +++|++.+++...... ...+..+.+.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECC
Confidence 3444443332 2355789999999999999999998775 7899998877665443 2357888998888777 56788
Q ss_pred CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ceeeeeecccce
Q 012996 143 DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLLRNIVFPSVI 221 (451)
Q Consensus 143 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~i 221 (451)
|+.|++||+.+ ...+..+. |...|.++.++++ .++++ .++.|++||+.++ +.+..+.. ..
T Consensus 80 d~~v~iWd~~~-----------~~~~~~~~-~~~~v~~v~~~~~----~~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~ 140 (355)
T 3vu4_A 80 KEVVHIWDDVK-----------KQDVSRIK-VDAPVKDLFLSRE----FIVVS-YGDVISVFKFGNPWKRITDDIR--FG 140 (355)
T ss_dssp TTEEEEEETTT-----------TEEEEEEE-CSSCEEEEEECSS----EEEEE-ETTEEEEEESSTTCCBSSCCEE--EE
T ss_pred ccEEEEEECCC-----------CcEEEEEE-CCCceEEEEEcCC----EEEEE-EcCEEEEEECCCCceeeEEecc--CC
Confidence 89999999955 33344444 6678999998765 33333 4789999999988 77666655 44
Q ss_pred eEEEECCCCCEEEE--EeCCCcEEEEEccCCCCCCC------CCCcee-eeeeccCCcceeEEEEec-CCEEEEEcCCCc
Q 012996 222 DAIALDPAEHVFYA--GSRDGSIYIAALNAESPSTS------SYGMHI-IGSLSDHSKAVTCLAYST-GDLLISGSEDGM 291 (451)
Q Consensus 222 ~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~ 291 (451)
..+++++ .++++ |+.+|.|++||+.+...... .....+ +..+.+|...|++++|+| +.+|++|+.||+
T Consensus 141 ~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 4566666 55655 68999999999987531100 000122 667889999999999999 999999999998
Q ss_pred -EEEEeCCCCceEEEee-c-CCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 292 -VRVWDPITHNIVRMFR-L-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 292 -i~iwd~~~~~~~~~~~-~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
|++||+.+++++.++. + |.++|.+++|+|++++|++++.|+.+++|++...
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 9999999999999998 5 9999999999999999999999999999998754
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=249.27 Aligned_cols=238 Identities=9% Similarity=-0.054 Sum_probs=190.1
Q ss_pred EECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccc
Q 012996 87 AANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHL 166 (451)
Q Consensus 87 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 166 (451)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+......... .....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~--~~~~~ 115 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILD--SKTNK 115 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEE--TTTCC
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEee--cCCcc
Confidence 345678999999999999999999999888876 567888899988 99999999999998853110000 01122
Q ss_pred ceec-ccCCcCceeEEEEee--cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCc
Q 012996 167 YLHS-FTGHTLRITDIVIGY--GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 167 ~~~~-~~~~~~~i~~i~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
.+.. ..+|...|.+++|+| ++ .++++++.||.|++||+++++...... +...+.+++|+|++.+|++|+.||.
T Consensus 116 ~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~ 193 (343)
T 3lrv_A 116 VLREIEVDSANEIIYMYGHNEVNT--EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI 193 (343)
T ss_dssp EEEEEECCCSSCEEEEECCC---C--CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC
T ss_pred eeEEeecCCCCCEEEEEcCCCCCC--CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE
Confidence 1222 236778999999999 77 899999999999999999998866553 4567999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCee--
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVN-- 314 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~-- 314 (451)
|++||+++.. .....+.. |..+|++++|+| +.+|++++ |+.|++||+++++.+..+.. |..++.
T Consensus 194 i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 194 LDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp EEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred EEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccce
Confidence 9999999874 22245666 999999999999 99999999 55999999999887766554 444554
Q ss_pred EEEEEecCceeeeccC-CCCccccccCCC
Q 012996 315 NILVVRRPLYLNLGSF-SNPHTSSRRHGS 342 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~-d~~i~iw~~~~~ 342 (451)
+++|+|+|++|++++. |+.+++|++...
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 5999999999999988 999999998643
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=100.00 E-value=1.3e-30 Score=249.06 Aligned_cols=322 Identities=13% Similarity=0.090 Sum_probs=250.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEEC--CCCceeeeecCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSW--SKPQVEVKSLPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~--~~~~~~~~~~~~ 80 (451)
.++++++ .|++|.+||..+++.+.++..+.. +..++ |+|+|+++++++.+ +.|.+||+ .+.+......+.
T Consensus 150 ~~~vs~~-~d~~V~v~D~~t~~~~~~i~~g~~----~~~v~--~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 150 LFSVTLR-DAGQIALVDGDSKKIVKVIDTGYA----VHISR--MSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp EEEEEEG-GGTEEEEEETTTCCEEEEEECSTT----EEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC
T ss_pred EEEEEEc-CCCeEEEEECCCceEEEEEecCcc----cceEE--ECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC
Confidence 4677788 899999999999999998874322 66777 99999999999998 99999999 777766555566
Q ss_pred CCeeEEEECC----CCcEEEEecc-CCCEEEEEcCCCcceeeecc----------ccC-CeeEEEEccCCc-EEEEeeCC
Q 012996 81 EPIKPIAANS----HGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGS-FLISGSED 143 (451)
Q Consensus 81 ~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~-~l~s~~~d 143 (451)
..+..++|+| +|+++++++. ++.|.+||..+++++..+.. |.. .+..+.++|++. ++++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 7889999999 9999999884 89999999999998888754 222 788999999665 45677778
Q ss_pred CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCCceeeeee-----c
Q 012996 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGRLLRNIV-----F 217 (451)
Q Consensus 144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~-----~ 217 (451)
+.|.+||+.+. ....+..+ .+...+.++.|+|++ ++++ ++..+++|.+||..+++++..+. |
T Consensus 302 g~i~vvd~~~~---------~~l~~~~i-~~~~~~~~~~~spdg--~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph 369 (543)
T 1nir_A 302 GKVLLVNYKDI---------DNLTVTSI-GAAPFLHDGGWDSSH--RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 369 (543)
T ss_dssp TEEEEEECTTS---------SSCEEEEE-ECCSSCCCEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC
T ss_pred CeEEEEEecCC---------CcceeEEe-ccCcCccCceECCCC--CEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC
Confidence 99999999652 11111122 245667789999998 6655 45568999999999999888776 3
Q ss_pred ccceeEEEECCC-CCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-------
Q 012996 218 PSVIDAIALDPA-EHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS------- 287 (451)
Q Consensus 218 ~~~i~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~------- 287 (451)
+.....+ ++|+ +..++++. .|+.|.+||+.+... ....++.+.++..|...+..++++| +++|++++
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~--~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~ 446 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH--PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR 446 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC--chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence 3333333 4676 56666665 589999999987321 1222477889999999999999999 99999987
Q ss_pred CCCcEEEEeCCCCceE-EEe--------ecCCCCeeEEEEEecCceeeec-----cCCCCccccccCCCCCCCc
Q 012996 288 EDGMVRVWDPITHNIV-RMF--------RLAKGPVNNILVVRRPLYLNLG-----SFSNPHTSSRRHGSQLPPP 347 (451)
Q Consensus 288 ~dg~i~iwd~~~~~~~-~~~--------~~~~~~v~~l~~s~~~~~l~~~-----s~d~~i~iw~~~~~~~~~~ 347 (451)
.+++|.+||+.+++.. ..+ ..+...+..+.|+|+|+.|+++ +.|+.|.+||..+.++...
T Consensus 447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 2779999999999887 444 3456789999999999999865 3579999999987765433
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=4.8e-30 Score=240.52 Aligned_cols=269 Identities=17% Similarity=0.159 Sum_probs=219.4
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeec--CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKS--CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LP 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~ 79 (451)
.++++++ .|+.|++||+.+++....+.. ..+|...+.+++ |++++.++++++.+ +.|++||+.++...... .+
T Consensus 135 ~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~s~~~d-~~v~~~d~~~~~~~~~~~~~ 210 (433)
T 3bws_A 135 RLAIPLL-EDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETIS--IPEHNELWVSQMQA-NAVHVFDLKTLAYKATVDLT 210 (433)
T ss_dssp EEEEEBT-TSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEE--EGGGTEEEEEEGGG-TEEEEEETTTCCEEEEEECS
T ss_pred eEEEEeC-CCCeEEEEECCCCeEeeecCcccccccCCceeEEE--EcCCCEEEEEECCC-CEEEEEECCCceEEEEEcCC
Confidence 4677787 899999999999988764332 224667888888 99999999998887 99999999987765443 46
Q ss_pred CCCeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee--------CCCcEEEee
Q 012996 80 AEPIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--------EDGCVRIWS 150 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--------~dg~i~vwd 150 (451)
...+.+++|+|++++++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+++++++++ .||.|++||
T Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d 289 (433)
T 3bws_A 211 GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYS 289 (433)
T ss_dssp SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEE
Confidence 78999999999999885 5557999999999999888877654 4589999999999999888 488999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+.++ ..... ..|...+.+++|++++. .++++++.++.|++||+.+++....+.+...+.+++|+|++
T Consensus 290 ~~~~-----------~~~~~-~~~~~~~~~~~~~~~g~-~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 290 MDKE-----------KLIDT-IGPPGNKRHIVSGNTEN-KIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp TTTT-----------EEEEE-EEEEECEEEEEECSSTT-EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CCCC-----------cEEee-ccCCCCcceEEECCCCC-EEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 9652 22222 24566788999999873 45677789999999999999999888888899999999999
Q ss_pred CEEEEEeC---------------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-CCcEE
Q 012996 231 HVFYAGSR---------------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE-DGMVR 293 (451)
Q Consensus 231 ~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~-dg~i~ 293 (451)
+++++++. ||.|++||+.+. +.+..+.. ...+.+++|+| +.+|++++. |+.|+
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---------TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---------EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCC---------cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 99998876 579999999875 44445544 45789999999 888887765 99999
Q ss_pred EEeCCC
Q 012996 294 VWDPIT 299 (451)
Q Consensus 294 iwd~~~ 299 (451)
+|++..
T Consensus 427 v~~~~~ 432 (433)
T 3bws_A 427 VYRRDG 432 (433)
T ss_dssp EEEETT
T ss_pred EEEecC
Confidence 999763
No 126
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.5e-31 Score=246.77 Aligned_cols=239 Identities=13% Similarity=0.114 Sum_probs=174.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceee------eecCCCCeeEEEECC--------CCcEEEEeccCCCEEEEEcCC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEV------KSLPAEPIKPIAANS--------HGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~------~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~iwd~~~ 111 (451)
+.+++.++++++.| ++|++||...+.... ...|.+.|.+++|+| |+++||+|+.|++|+|||+.+
T Consensus 97 ~~~~~~~las~~~d-~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~ 175 (393)
T 4gq1_A 97 SPVYSLFLACVCQD-NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD 175 (393)
T ss_dssp CCEEEEEEEEEETT-SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred cCCCCCEEEEEeCC-CcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence 56778889999888 999999998876532 235889999999998 889999999999999999999
Q ss_pred CcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCcchhhhhhhhc--------------ccccceecccCCcC
Q 012996 112 GRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLLTVFEECESQR--------------ASHLYLHSFTGHTL 176 (451)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 176 (451)
+..+..+..|..+|.+++|+|++ .+|++++.||+|++||+++......... ..........+|..
T Consensus 176 ~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 255 (393)
T 4gq1_A 176 EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS 255 (393)
T ss_dssp TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence 88888888899999999999977 4799999999999999977533221110 00111123357888
Q ss_pred ceeEEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccc------------------eeEEEECC--CCCEEE
Q 012996 177 RITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSV------------------IDAIALDP--AEHVFY 234 (451)
Q Consensus 177 ~i~~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~------------------i~~~~~~~--~~~~l~ 234 (451)
.+.++.|. +++ ..+++++.|+++++||+..++....+. +... .....++| ++.+++
T Consensus 256 ~v~~v~~~~~dg--~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 256 SLANVRWIGSDG--SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SCSEEEEETTTT--CEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cceeeeeecCCC--CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 99999987 566 899999999999999998776554442 2111 12233443 344667
Q ss_pred EEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 235 AGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 235 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
+|+.||.|++||+.++. .......|..+|++++|+| |++||+++.+| +.+|.+
T Consensus 334 sgs~Dg~V~lwd~~~~~---------~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKD---------SNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp EETTTTEEEEEETTCTT---------CCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred EECCCCEEEEEECCCCc---------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 78899999999998863 3445667889999999999 99999998777 555543
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.98 E-value=5.7e-30 Score=237.57 Aligned_cols=282 Identities=15% Similarity=0.056 Sum_probs=218.3
Q ss_pred CCC----CeEEEEC--ccCceee--eeecCCCCCCceEEecceEee--------------ccCcccCCCCC--C---ccE
Q 012996 11 ADT----GIGCWDL--ESGAEQL--RYKSCASPPHGLACVGQRFLA--------------SSQLREQPSAS--S---GSI 63 (451)
Q Consensus 11 ~dg----~i~vwd~--~~~~~~~--~~~~~~~~~~~v~~~~~~~~~--------------~~~~l~~~~~d--~---g~i 63 (451)
.|| .|+|||+ .+++.+. .+.++. ..+..++ +.+ .+..++.++.+ + +.|
T Consensus 87 ~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i 161 (415)
T 2hqs_A 87 PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNK---QWLRYAG--HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYEL 161 (415)
T ss_dssp TTSCEEEEEEEEECSSSTTCEEEEEEEEECG---GGHHHHH--HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEE
T ss_pred CCCeEEEEEEEEeCCCCCCCEEeeeEEEcCh---hHHHHHH--HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceE
Confidence 467 8999999 9998773 355543 3344444 333 14455554443 2 699
Q ss_pred EEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC---CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-E
Q 012996 64 LYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-S 139 (451)
Q Consensus 64 ~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s 139 (451)
++||++.........|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+|||+.|+ +
T Consensus 162 ~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~ 240 (415)
T 2hqs_A 162 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFA 240 (415)
T ss_dssp EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEE
Confidence 999998766666666788999999999999999998875 8999999988765 4667888999999999999887 6
Q ss_pred eeCCCc--EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CC--cEEEEEcCCCceeee
Q 012996 140 GSEDGC--VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DR--TCKVWSLLKGRLLRN 214 (451)
Q Consensus 140 ~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~ 214 (451)
++.++. |.+||+.++ ....+..|...+.+++|+|++ +.|++++. ++ .|++||+.+++....
T Consensus 241 ~~~~g~~~i~~~d~~~~------------~~~~l~~~~~~~~~~~~spdg--~~l~~~s~~~g~~~i~~~d~~~~~~~~l 306 (415)
T 2hqs_A 241 LSKTGSLNLYVMDLASG------------QIRQVTDGRSNNTEPTWFPDS--QNLAFTSDQAGRPQVYKVNINGGAPQRI 306 (415)
T ss_dssp ECTTSSCEEEEEETTTC------------CEEECCCCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCCEEC
T ss_pred EecCCCceEEEEECCCC------------CEEeCcCCCCcccceEECCCC--CEEEEEECCCCCcEEEEEECCCCCEEEE
Confidence 666655 999998541 124566788899999999998 77777765 45 678889988775443
Q ss_pred eecccceeEEEECCCCCEEEEEeCC---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996 215 IVFPSVIDAIALDPAEHVFYAGSRD---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
..+...+.+++|+|+|++|++++.+ ..|++||+.++. ...+..|. .+.+++|+| +++|++++.++
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~----------~~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----------VQVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC----------EEECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC----------EEEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 3466788899999999999988764 589999998764 23444554 899999999 99999988877
Q ss_pred ---cEEEEeCCCCceEEEeecCCCCeeEEEEEecCce
Q 012996 291 ---MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY 324 (451)
Q Consensus 291 ---~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~ 324 (451)
.|++||+. +.....+..|.+.|.+++|+|...+
T Consensus 376 ~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 376 MGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp TEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCCC
T ss_pred CccEEEEEECC-CCcEEEeeCCCCCCcCCcccccccc
Confidence 79999986 6667889999999999999996543
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=4.9e-28 Score=231.26 Aligned_cols=276 Identities=11% Similarity=0.058 Sum_probs=219.8
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc--CCCcceeeeccccC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--ASGRLLKKWHAHYR 123 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~ 123 (451)
|+|++..+++.+.+ ++|.+||..++++.........+.+++|+|+|++|++++.|+.|.+||+ .+++.+..+. +..
T Consensus 145 ~~p~~~~~vs~~~d-~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~ 222 (543)
T 1nir_A 145 LDLPNLFSVTLRDA-GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGI 222 (543)
T ss_dssp CCGGGEEEEEEGGG-TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCS
T ss_pred cCCCCEEEEEEcCC-CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCC
Confidence 78888888777776 9999999999887655443344899999999999999999999999999 8888888887 455
Q ss_pred CeeEEEEcc----CCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccC----------CcC-ceeEEEEeecC
Q 012996 124 AVTCLVFSE----DGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTG----------HTL-RITDIVIGYGG 187 (451)
Q Consensus 124 ~v~~~~~~~----~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~i~~i~~~~~~ 187 (451)
.+..++|+| ||+++++++. +++|.+||..++ .++..+.. |.. .+.++.+++++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~-----------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~ 291 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL-----------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 291 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC-----------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS
T ss_pred CcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc-----------ccceeecccCcccCccccccCCceEEEEECCCC
Confidence 679999999 9999998885 899999998552 22333222 223 78899999876
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceee--eeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLR--NIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
. .++++...++.|.+||+.+.+.+. .+.+...+..++|+|++++|++++ .++.|.+||..++ +.+..
T Consensus 292 ~-~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---------~l~~~ 361 (543)
T 1nir_A 292 P-EFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---------RLSAL 361 (543)
T ss_dssp S-EEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---------EEEEE
T ss_pred C-EEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---------eEEEe
Confidence 4 678888899999999998876544 555666788999999999877665 5889999999986 33444
Q ss_pred ecc----CCcceeEEEEec--CCEEEEEc-CCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeecc-
Q 012996 265 LSD----HSKAVTCLAYST--GDLLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGS- 329 (451)
Q Consensus 265 ~~~----~~~~v~~~~~~~--~~~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s- 329 (451)
+.. |......+ ++| +.+++++. .|++|.+||+.+ +++++++..|.+.+..+.|+|++++|++++
T Consensus 362 i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 362 VDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred eccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence 432 54434333 456 55667765 689999999998 899999999988899999999999999987
Q ss_pred ------CCCCccccccCCCCCC
Q 012996 330 ------FSNPHTSSRRHGSQLP 345 (451)
Q Consensus 330 ------~d~~i~iw~~~~~~~~ 345 (451)
.+++|.+||+.+....
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCcccCceEEEEECCCCCCC
Confidence 3789999999877654
No 129
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.3e-27 Score=239.24 Aligned_cols=310 Identities=11% Similarity=0.083 Sum_probs=229.4
Q ss_pred EEeecCCC-CC-----CeEEEECccCceeeeeecCCCCC---------------------CceEEecceEeeccCcccCC
Q 012996 4 LIASSSVA-DT-----GIGCWDLESGAEQLRYKSCASPP---------------------HGLACVGQRFLASSQLREQP 56 (451)
Q Consensus 4 ~l~s~~~~-dg-----~i~vwd~~~~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~~~~~l~~~ 56 (451)
+|++++ . |+ .|.+||+.+++....+..+...+ ..+..++ |+|+|++|+++
T Consensus 50 ~la~~~-~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~ 126 (741)
T 2ecf_A 50 RVTFLR-GKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ--WSPDAQRLLFP 126 (741)
T ss_dssp EEEEEE-CCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE--ECTTSSEEEEE
T ss_pred EEEEEe-ccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE--ECCCCCEEEEE
Confidence 467776 5 77 89999999998776664432210 2355666 99999999988
Q ss_pred CCCCccEEEEECCCC---ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCC---------
Q 012996 57 SASSGSILYWSWSKP---QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRA--------- 124 (451)
Q Consensus 57 ~~d~g~i~vw~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------- 124 (451)
+. +.|.+||+.++ .......+...+.+++|+|||++|+.++ ++.|++||+.+++.......+...
T Consensus 127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v 203 (741)
T 2ecf_A 127 LG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFV 203 (741)
T ss_dssp ET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHH
T ss_pred eC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceecccccee
Confidence 86 89999999987 6555555678899999999999999877 468999999888766554444332
Q ss_pred -------eeEEEEccCCcEEEEeeCCC---------------------------------cEEEeeCcc-hhhhhhhhcc
Q 012996 125 -------VTCLVFSEDGSFLISGSEDG---------------------------------CVRIWSLLT-VFEECESQRA 163 (451)
Q Consensus 125 -------v~~~~~~~~~~~l~s~~~dg---------------------------------~i~vwd~~~-~~~~~~~~~~ 163 (451)
+.++.|+|||++|++++.|+ .|.+||+.+ +..
T Consensus 204 ~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~------- 276 (741)
T 2ecf_A 204 ADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT------- 276 (741)
T ss_dssp HHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-------
T ss_pred eeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-------
Confidence 47899999999999988765 788888843 210
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeC-----CCcEEEEEcCCCceeeeeeccc-----ceeEEEECCCCCEE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLKGRLLRNIVFPS-----VIDAIALDPAEHVF 233 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l 233 (451)
..+.....|...+.+++| |++ +.|++++. +..|++||+.+++....+.... .+..++|+|+|+++
T Consensus 277 --~~~~~~~~~~~~~~~~~~-pDg--~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 277 --QWIDLGKEQDIYLARVNW-RDP--QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp --EEECCCSCSSEEEEEEEE-EET--TEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred --EEecCCCCcceEEEEEEe-CCC--CEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 111111257788999999 998 67776543 5689999999998776665322 45689999999999
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE-EEec-CCEEE-EEcCCC--cEEEEeCCC-CceEEEee
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL-AYST-GDLLI-SGSEDG--MVRVWDPIT-HNIVRMFR 307 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~l~-s~~~dg--~i~iwd~~~-~~~~~~~~ 307 (451)
++++.+|.+.+|.++... . ...+..|...|..+ .|+| ++.|+ +++.++ .++||++.. +.....+.
T Consensus 352 ~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~ 422 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKG--------K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS 422 (741)
T ss_dssp EEECTTSSCEEEEECSSS--------C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred EEecCCCccEEEEEcCCC--------C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence 999999988888776432 3 45666777888887 5999 77665 555555 899999864 55566676
Q ss_pred cCCCCeeEEEEEecCceeeeccCC----CCccccccCC
Q 012996 308 LAKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHG 341 (451)
Q Consensus 308 ~~~~~v~~l~~s~~~~~l~~~s~d----~~i~iw~~~~ 341 (451)
. ...+..++|+|||++|+....+ ..+.+|+..+
T Consensus 423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 5 6678999999999998765433 3466666543
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.1e-27 Score=208.24 Aligned_cols=211 Identities=15% Similarity=0.074 Sum_probs=158.9
Q ss_pred CceEEecceEeec----cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec--cCCCEEEEEc-
Q 012996 37 HGLACVGQRFLAS----SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QSGDIYMWEV- 109 (451)
Q Consensus 37 ~~v~~~~~~~~~~----~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~- 109 (451)
..|..++ |+|+ ++.+++++. .+.+|++ ++++++.+++ .|+.|++|++
T Consensus 112 ~~v~sla--~spd~~~~~~~l~s~g~---~~~v~~l---------------------~~g~lv~ss~~g~d~~V~~~~~s 165 (356)
T 2w18_A 112 REIRALF--CSSDDESEKQVLLKSGN---IKAVLGL---------------------TKRRLVSSSGTLSDQQVEVMTFA 165 (356)
T ss_dssp EEEEEEC--C------CCEEEEEEEE---EEEEEEE---------------------TTTEEEEEESSSTTCEEEEEEEC
T ss_pred cceEEEE--ECCCccccccEEEeCCC---eEEEEec---------------------CCCcEEEecccCCCCcEEEEEEC
Confidence 4667777 8888 888887653 4666742 4566666643 5889999999
Q ss_pred CCCcceeeeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc---CceeEEEE
Q 012996 110 ASGRLLKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---LRITDIVI 183 (451)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~i~~ 183 (451)
.+++.+..+..|...+..++|++ ++.+|++++.|++|+|||+.+ ...++++.+|. ..+.+++|
T Consensus 166 ~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-----------Gk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 166 EDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-----------GQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT-----------CCEEEEEECCC---CCCEEEEE
T ss_pred CCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC-----------CcEEEEEcCCCcceeeeEEEEE
Confidence 55888888889999999999999 779999999999999999955 45666676543 36777789
Q ss_pred eecCCeeEE------------EEeeCCCcEEEEEcCCCceeeeee------cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996 184 GYGGVSATI------------VSASEDRTCKVWSLLKGRLLRNIV------FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (451)
Q Consensus 184 ~~~~~~~~l------------~s~~~d~~i~iwd~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (451)
+|++ .++ ++|+.|++|++||..+++.+..+. +...+. ..+.++.++++|+.|++|++|
T Consensus 235 SpdG--~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~l--sg~~sg~~lASgS~DgTIkIW 310 (356)
T 2w18_A 235 SEMG--LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFL--EGDVKDHCAAAILTSGTIAIW 310 (356)
T ss_dssp EETT--EEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEE--EEEEETTEEEEEETTSCEEEE
T ss_pred CCCC--CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeE--ccccCCCEEEEEcCCCcEEEE
Confidence 9988 554 678899999999999998876542 122222 223347789999999999999
Q ss_pred EccCCCCCCCCCCceeeeeeccCCccee-EEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 246 ALNAESPSTSSYGMHIIGSLSDHSKAVT-CLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
|+.++ +.+.++.+|...+. +++|+| +.+|++|+.|++|+|||+
T Consensus 311 Dl~tG---------k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 311 DLLLG---------QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ETTTC---------SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ECCCC---------cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99987 56778888887655 689999 999999999999999995
No 131
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.96 E-value=1.4e-27 Score=237.79 Aligned_cols=309 Identities=13% Similarity=0.085 Sum_probs=220.0
Q ss_pred EeecCCCCCCeEEEECccCcee-eeeecCCC--------------CCCceEEecceEeeccCcccCCCCCCccEEEEECC
Q 012996 5 IASSSVADTGIGCWDLESGAEQ-LRYKSCAS--------------PPHGLACVGQRFLASSQLREQPSASSGSILYWSWS 69 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~-~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~ 69 (451)
+++++ .|+ | +||+.+|+.+ ..+..+.. +...+.+++ |+|+ +.++.+. + +.|.+||+.
T Consensus 38 ~~~~~-~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~--~spd-~~~~~~~-~-~~i~~~d~~ 109 (706)
T 2z3z_A 38 YVFIE-GDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL--DAGR-GLVVLFT-Q-GGLVGFDML 109 (706)
T ss_dssp EEEEE-TTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE--ETTT-TEEEEEE-T-TEEEEEETT
T ss_pred EEEEe-CCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE--ECCC-CeEEEEE-C-CEEEEEECC
Confidence 34445 566 8 9999999873 33332211 114578888 9999 6555553 3 899999999
Q ss_pred CCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-----CcceeeeccccCC--------------eeEEEE
Q 012996 70 KPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-----GRLLKKWHAHYRA--------------VTCLVF 130 (451)
Q Consensus 70 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------v~~~~~ 130 (451)
+++......+...+.+++|+|||++|+++ .++.|++||+.+ ++.......+... +.++.|
T Consensus 110 ~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~ 188 (706)
T 2z3z_A 110 ARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFW 188 (706)
T ss_dssp TTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred CCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEE
Confidence 88776666677789999999999999985 679999999998 7766554444433 488999
Q ss_pred ccCCcEEEEee---------------------------------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCc
Q 012996 131 SEDGSFLISGS---------------------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLR 177 (451)
Q Consensus 131 ~~~~~~l~s~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (451)
+|||++|++++ .+..|.+||+.++. ...+.....|...
T Consensus 189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~---------~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK---------TVYLQTGEPKEKF 259 (706)
T ss_dssp CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE---------EEECCCCSCTTCE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc---------eEeeccCCCCcee
Confidence 99999999987 44679999996521 1111112356778
Q ss_pred eeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee---ccc---ceeEEEECC--CCCEEEEEeCCCcEEE
Q 012996 178 ITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV---FPS---VIDAIALDP--AEHVFYAGSRDGSIYI 244 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i 244 (451)
+.+++|+|++ +.|++++.++ .|++||+.+++....+. ... .+.+++|+| ++++++++..+|.+++
T Consensus 260 ~~~~~~spdg--~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l 337 (706)
T 2z3z_A 260 LTNLSWSPDE--NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL 337 (706)
T ss_dssp EEEEEECTTS--SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred EeeEEEECCC--CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence 9999999998 7888877765 89999999984333332 221 246789999 9999999999999999
Q ss_pred EEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CCEEEEE-cCCC----cEEEEeCCCCceEEEeecCCCCeeEEE
Q 012996 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISG-SEDG----MVRVWDPITHNIVRMFRLAKGPVNNIL 317 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~l~ 317 (451)
|.+.... ..+..+..|...+.. ++|+| ++.|+.+ +.++ .|..||+.+++ +..+. |...+.+++
T Consensus 338 ~~~~~~~--------~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~ 407 (706)
T 2z3z_A 338 YLYDTTG--------RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQ 407 (706)
T ss_dssp EEEETTS--------CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEE
T ss_pred EEEECCC--------CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEE
Confidence 9886321 335566677777877 79999 7766554 4444 67777877765 44444 567799999
Q ss_pred EEecCceeeeccCC----CCccccccCCCC
Q 012996 318 VVRRPLYLNLGSFS----NPHTSSRRHGSQ 343 (451)
Q Consensus 318 ~s~~~~~l~~~s~d----~~i~iw~~~~~~ 343 (451)
|+|||++|+.++.+ +.+.+|+..+..
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 99999998776443 458999987654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.2e-27 Score=222.03 Aligned_cols=276 Identities=12% Similarity=0.022 Sum_probs=210.0
Q ss_pred ceEEecceEeeccCccc-CCC---CCCc----cEEEEEC--CCCceee---eecCCCCeeEEEECC--------------
Q 012996 38 GLACVGQRFLASSQLRE-QPS---ASSG----SILYWSW--SKPQVEV---KSLPAEPIKPIAANS-------------- 90 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~-~~~---~d~g----~i~vw~~--~~~~~~~---~~~~~~~v~~~~~~~-------------- 90 (451)
.+...+ |.+.|..++ +++ ..+| .|++||+ .+++... ...|...+..+++++
T Consensus 64 ~~~~~~--w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 64 EVQPAA--WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GCCHHH--HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcCHHH--HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 344445 777776554 443 1237 8999999 7777542 234666677777664
Q ss_pred CCcEEEEeccC------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC---cEEEeeCcchhhhhhhh
Q 012996 91 HGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQ 161 (451)
Q Consensus 91 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~ 161 (451)
.+..++.++.+ +.|++||+. +.....+..|...+.+++|+|||++|++++.++ .|++||+.++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg------- 213 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG------- 213 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-------
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------
Confidence 15556655554 789999986 555677888999999999999999999999875 9999999652
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCc--EEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRT--CKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
.. ..+..|...+.+++|+|++ +.|+ +++.++. |++||+.+++......+...+.+++|+|+++.|++++.
T Consensus 214 ----~~-~~l~~~~~~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~ 286 (415)
T 2hqs_A 214 ----AV-RQVASFPRHNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSD 286 (415)
T ss_dssp ----CE-EEEECCSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred ----cE-EEeecCCCcccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEEC
Confidence 12 2456678889999999998 6666 6666665 99999998877554457788999999999999988876
Q ss_pred -CC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC---CcEEEEeCCCCceEEEeecCCC
Q 012996 239 -DG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED---GMVRVWDPITHNIVRMFRLAKG 311 (451)
Q Consensus 239 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~ 311 (451)
++ .|++||+.++. ...+..|...+.+++|+| +++|++++.+ +.|.+||+.+++.. .+..+.
T Consensus 287 ~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~- 354 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF- 354 (415)
T ss_dssp TTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-
T ss_pred CCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-
Confidence 45 67777887653 233455677899999999 9999888764 58999999988774 455554
Q ss_pred CeeEEEEEecCceeeeccCCC---CccccccCCC
Q 012996 312 PVNNILVVRRPLYLNLGSFSN---PHTSSRRHGS 342 (451)
Q Consensus 312 ~v~~l~~s~~~~~l~~~s~d~---~i~iw~~~~~ 342 (451)
.+.+++|+|+|++|++++.++ .+.+|+..+.
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 899999999999999998877 6999998754
No 133
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.96 E-value=9.4e-27 Score=206.19 Aligned_cols=251 Identities=16% Similarity=0.076 Sum_probs=195.6
Q ss_pred CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-Ccceeeeccc-cCCeeEEEEccCCcEE
Q 012996 60 SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH-YRAVTCLVFSEDGSFL 137 (451)
Q Consensus 60 ~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l 137 (451)
++.|++||+.+++......|...|.+++|+|++++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 3999999999988776677888999999999999999976 78999999998 8777666665 4678999999999999
Q ss_pred EEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEc--CCCcee
Q 012996 138 ISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSL--LKGRLL 212 (451)
Q Consensus 138 ~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~--~~~~~~ 212 (451)
++++ .++...+|.+.. ... ....+..+. .+..++|+|++ ..++ +++.++.+++|++ .++...
T Consensus 100 ~~~~~~~~~~~~l~~~~~---------~~~-~~~~~~~~~-~~~~~~~spdg--~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 100 AISDKVEFGKSAIYLLPS---------TGG-TPRLMTKNL-PSYWHGWSPDG--KSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EEEECTTTSSCEEEEEET---------TCC-CCEECCSSS-SEEEEEECTTS--SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEeCCCCcceEEEEEC---------CCC-ceEEeecCC-CccceEECCCC--CEEEEEECCCCceEEEEEECCCCcce
Confidence 9998 445666666532 111 122333333 48889999988 5555 7888999999985 444444
Q ss_pred eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCC-
Q 012996 213 RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSED- 289 (451)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d- 289 (451)
....+...+.+++|+|+++.|++++ .++.+.+|++.... .....+..|...+.+++|+| +++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECTTSSEEEEEEEET
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECCCCCEEEEEEcCC
Confidence 4444677899999999999888766 58999999987432 23456667888999999999 9999888766
Q ss_pred ----------CcEEEEeCCCCce--EEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 290 ----------GMVRVWDPITHNI--VRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 290 ----------g~i~iwd~~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
+.|.+||+.+++. +..+..|...+..++|+|++++|++++.+.
T Consensus 239 ~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 239 DVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999988765 444557888999999999999998887654
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=1.6e-25 Score=202.88 Aligned_cols=296 Identities=11% Similarity=0.124 Sum_probs=201.0
Q ss_pred EEEeecCCCCCCeEEEECc-cCc--eeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceee--
Q 012996 3 LLIASSSVADTGIGCWDLE-SGA--EQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV-- 75 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~-- 75 (451)
.++++++ .|+.|.+||+. ++. .+..+. +...+.+++ |+|+|+++++++.+++.|.+|+++ ++....
T Consensus 6 ~l~~~~~-~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~ 78 (343)
T 1ri6_A 6 TVYIASP-ESQQIHVWNLNHEGALTLTQVVD----VPGQVQPMV--VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 78 (343)
T ss_dssp EEEEEEG-GGTEEEEEEECTTSCEEEEEEEE----CSSCCCCEE--ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EEEEeCC-CCCeEEEEEECCCCcEEEeeeEe----cCCCCceEE--ECCCCCEEEEeecCCCeEEEEEecCCCCceeecc
Confidence 3445546 79999999985 342 233332 334455566 999999998888876999999997 444332
Q ss_pred eecCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcC---CCcceeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEee
Q 012996 76 KSLPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVA---SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWS 150 (451)
Q Consensus 76 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd 150 (451)
.......+..++|+|++++|++++. ++.|.+||+. ..+....+..+ ..+.+++|+|+++++++++ .++.|.+||
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 79 ESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp EEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 2223348899999999998866654 7889999994 44445555433 4588999999999888877 889999999
Q ss_pred Ccchhhhhhhhccccccee--ccc-CCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCC--Cce--eeeee-c----
Q 012996 151 LLTVFEECESQRASHLYLH--SFT-GHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLK--GRL--LRNIV-F---- 217 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~--~~~--~~~~~-~---- 217 (451)
+.+.. ...... ... .....+.+++|+|++ .+++ ++..++.|.+||+.. ++. ...+. .
T Consensus 158 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~pdg--~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~ 227 (343)
T 1ri6_A 158 VSDDG--------HLVAQDPAEVTTVEGAGPRHMVFHPNE--QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF 227 (343)
T ss_dssp ECTTS--------CEEEEEEEEEECSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred ecCCC--------ceeeecccccccCCCCCcceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence 95410 001111 112 233467889999988 6554 555889999999953 432 22222 1
Q ss_pred --ccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-CCCcE
Q 012996 218 --PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-EDGMV 292 (451)
Q Consensus 218 --~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~dg~i 292 (451)
...+..++|+|++++|+++. .++.|.+||+..... ....+..+..+.. +.+++|+| +++|++++ .++.|
T Consensus 228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~-----~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v 301 (343)
T 1ri6_A 228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS-----VLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHI 301 (343)
T ss_dssp CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC-----CEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEE
T ss_pred cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC-----ceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeE
Confidence 23466899999999887554 789999999983210 0234444544444 88999999 88888777 68999
Q ss_pred EEE--eCCCCc--eEEEeecCCCCeeEEEEEecCc
Q 012996 293 RVW--DPITHN--IVRMFRLAKGPVNNILVVRRPL 323 (451)
Q Consensus 293 ~iw--d~~~~~--~~~~~~~~~~~v~~l~~s~~~~ 323 (451)
.+| |..+++ .+..+.. .....+++|.|+.+
T Consensus 302 ~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 302 SVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred EEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 999 544664 3444544 24567888888654
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.95 E-value=1.3e-25 Score=202.45 Aligned_cols=275 Identities=8% Similarity=-0.011 Sum_probs=198.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeee-cCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKS-LPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~-~~~ 80 (451)
.++++++ .++.|.+||+.+++....+..+ .... .++ |+|+|+++++++..++.|.+||..++.. .... .+.
T Consensus 11 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~---~~~~-~~~--~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 11 FGIVVEQ-HLRRISFFSTDTLEILNQITLG---YDFV-DTA--ITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp EEEEEEG-GGTEEEEEETTTCCEEEEEECC---CCEE-EEE--ECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EEEEEec-CCCeEEEEeCcccceeeeEEcc---CCcc-eEE--EcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 4567777 8999999999999998877643 2334 677 9999998877777559999999988875 3333 344
Q ss_pred CCeeEEEECCCCcEEEEeccCC---CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe-eCCCc-EEEeeCcchh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSG---DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGC-VRIWSLLTVF 155 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~-i~vwd~~~~~ 155 (451)
.+..+++|+|+|++++++..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ..++. |.+|++....
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG 162 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCC
Confidence 4444499999999999665553 8999999999888877644 456899999999865554 55588 9999985411
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeE-EEEeeCCCcEEEEEcCCCce---eeeeecccceeEEEECCCCC
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSAT-IVSASEDRTCKVWSLLKGRL---LRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~i~~~~~~~~~~ 231 (451)
... ... ...+ .......+++|+|++ ++ ++++..++.|.+||+.+++. +..+.....+..++|+|+++
T Consensus 163 ~~~-----~~~-~~~~-~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 163 VLF-----DTG-QEFI-SGGTRPFNITFTPDG--NFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp CEE-----EEE-EEEE-CSSSSEEEEEECTTS--SEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred cEe-----ecC-Cccc-cCCCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 000 000 1111 234457899999998 54 45555789999999999988 77777778889999999999
Q ss_pred EEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccC----Cc---ceeEEEEec-CCEEEEE-cCCCcEEEEeCCCCc
Q 012996 232 VFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDH----SK---AVTCLAYST-GDLLISG-SEDGMVRVWDPITHN 301 (451)
Q Consensus 232 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~---~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~~~ 301 (451)
++++++ .++.|.+||+.++.. ..+..+..+ .. ....++|+| +++|+++ ..++.|.+||+....
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTL-------SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEE-------EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEEEEEcCCCEEEEEECCCCce-------eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 877665 477899999987642 112222111 22 235689999 8877555 556799999987644
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.95 E-value=1.7e-25 Score=202.09 Aligned_cols=274 Identities=12% Similarity=0.033 Sum_probs=201.2
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC-
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE- 81 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~- 81 (451)
.+|++++ .++.|.+||+.+++.+..+...... ..+..++ |+|+|+.+++++..++.|.+||..+++.........
T Consensus 2 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPA-RPDKLVVIDTEKMAVDKVITIADAG-PTPMVPM--VAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEE-TTTEEEEEETTTTEEEEEEECTTCT-TCCCCEE--ECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT
T ss_pred cEEEEcC-CCCeEEEEECCCCcEEEEEEcCCCC-CCccceE--EcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc
Confidence 4678888 8999999999999998887643210 0234455 999998876665555999999998887654433222
Q ss_pred -----CeeEEEECCCCcEEEEec------------cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC
Q 012996 82 -----PIKPIAANSHGTYIAGGG------------QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG 144 (451)
Q Consensus 82 -----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg 144 (451)
.+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 688999999999998875 578999999998888777754 4567889999999988887 68
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCC-----------------------c
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDR-----------------------T 200 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~-----------------------~ 200 (451)
.|.+||+.++. ....+..+.. ...+.|++++ ..++..+ .++ .
T Consensus 155 ~i~~~d~~~~~-----------~~~~~~~~~~-~~~~~~s~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 155 DLHVMDPEAGT-----------LVEDKPIQSW-EAETYAQPDV--LAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp SEEEEETTTTE-----------EEEEECSTTT-TTTTBCCCBC--CCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred eEEEEECCCCc-----------Eeeeeecccc-CCCceeCCCc--cEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 99999996532 2222222210 0112566665 3333332 222 4
Q ss_pred EEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEE
Q 012996 201 CKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAY 277 (451)
Q Consensus 201 i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 277 (451)
|.+||+.+++.. .+. +...+.+++|+|++++++++ ++.|++||+.+. +.+..+.. ...+.+++|
T Consensus 221 v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~ 287 (337)
T 1pby_B 221 LLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN---------ASIKRVPL-PHSYYSVNV 287 (337)
T ss_dssp EEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT---------EEEEEEEC-SSCCCEEEE
T ss_pred eEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC---------cCcceecC-CCceeeEEE
Confidence 789999988765 332 44567889999999999988 799999999875 33334432 356789999
Q ss_pred ec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 278 ST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 278 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
+| +++|++++.++.|.+||+.+++.+..+..+.
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 99 9999999999999999999999998887653
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=6.7e-26 Score=205.31 Aligned_cols=275 Identities=13% Similarity=0.132 Sum_probs=191.2
Q ss_pred CcccCCCCCCccEEEEECC-CCc--eeeeecCCCCeeEEEECCCCcEEEEeccC-CCEEEEEcC--CCc--ceeeecccc
Q 012996 51 QLREQPSASSGSILYWSWS-KPQ--VEVKSLPAEPIKPIAANSHGTYIAGGGQS-GDIYMWEVA--SGR--LLKKWHAHY 122 (451)
Q Consensus 51 ~~l~~~~~d~g~i~vw~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~--~~~~~~~~~ 122 (451)
+++++++..++.|.+|+++ ++. ......+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 3444442333999999985 332 22334467789999999999988888776 899999997 554 334444443
Q ss_pred CCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCc
Q 012996 123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRT 200 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~ 200 (451)
.+.+++|+|++++|++++. ++.|.+||+..+ ........+.. ...+.+++|++++ +++++++ .++.
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~-~~~~~~~~~s~dg--~~l~~~~~~~~~ 152 (343)
T 1ri6_A 85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG--------LPVGVVDVVEG-LDGCHSANISPDN--RTLWVPALKQDR 152 (343)
T ss_dssp -CCSEEEECTTSSEEEEEETTTTEEEEEEEETT--------EEEEEEEEECC-CTTBCCCEECTTS--SEEEEEEGGGTE
T ss_pred -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC--------ccccccccccC-CCCceEEEECCCC--CEEEEecCCCCE
Confidence 7899999999998876665 888999998421 01122233333 3357889999988 6677666 8999
Q ss_pred EEEEEcCC-Cceee----eee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeecc---CC
Q 012996 201 CKVWSLLK-GRLLR----NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSD---HS 269 (451)
Q Consensus 201 i~iwd~~~-~~~~~----~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~ 269 (451)
|.+||+.+ ++... .+. ....+..++|+|+++++++++ .++.|.+|++........ .......+.. ..
T Consensus 153 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~--~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 153 ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE--CVQTLDMMPENFSDT 230 (343)
T ss_dssp EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE--EEEEEECSCTTCCSC
T ss_pred EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE--EEeeccccCcccccc
Confidence 99999987 65432 122 345788999999999776655 789999999964221000 0011111111 13
Q ss_pred cceeEEEEec-CCEEE-EEcCCCcEEEEeCC----CCceEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996 270 KAVTCLAYST-GDLLI-SGSEDGMVRVWDPI----THNIVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~ 340 (451)
..+..++|+| +++|+ ++..++.|.+||+. ..+.+..+..+.. +.+++|+|+|++|++++ .++.+.+|+++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 4677899999 87776 55579999999998 3345556665544 89999999999887776 68999999765
No 138
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.95 E-value=4.5e-26 Score=227.60 Aligned_cols=299 Identities=11% Similarity=0.045 Sum_probs=210.3
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--------CccEEEEECCCCceeee
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVK 76 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~g~i~vw~~~~~~~~~~ 76 (451)
+++ + .||+|++||+.+++....+..+......+..++ |+|+|++|++++.+ ++.+.+||+.++.....
T Consensus 31 ~~~-~-~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~--~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 106 (723)
T 1xfd_A 31 IYR-E-QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYE--ISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL 106 (723)
T ss_dssp CCC-C-SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEE--ECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC
T ss_pred EEE-e-CCCCEEEEECCCCcEEEEeccccccccccceEE--ECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec
Confidence 344 5 799999999999998877765543323477777 99999999988653 26889999998875322
Q ss_pred ec---CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe------------------eEEEEccCCc
Q 012996 77 SL---PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV------------------TCLVFSEDGS 135 (451)
Q Consensus 77 ~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~ 135 (451)
.. +...+..++|||||+.||.++. +.|++||+.+++.......+...+ .++.|+|||+
T Consensus 107 ~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~ 185 (723)
T 1xfd_A 107 DPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT 185 (723)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS
T ss_pred cCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC
Confidence 22 2334899999999999999776 789999999888776665544433 7899999999
Q ss_pred EEEEeeCCC----------------------------------cEEEeeCcchhhhhhhhcccccceeccc------CCc
Q 012996 136 FLISGSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFT------GHT 175 (451)
Q Consensus 136 ~l~s~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~ 175 (451)
.|++++.|+ .|.+||+.++. ....+. .+.
T Consensus 186 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-----------~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 186 RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-----------HDLEMMPPDDPRMRE 254 (723)
T ss_dssp EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-----------CCEECCCCCCGGGSS
T ss_pred EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-----------eeEEeeCCccCCCcc
Confidence 999887653 68888885521 112222 246
Q ss_pred CceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCceeeeee--cccce----eEEEECCCCCEEEE--EeCCC---
Q 012996 176 LRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGRLLRNIV--FPSVI----DAIALDPAEHVFYA--GSRDG--- 240 (451)
Q Consensus 176 ~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~--~~~~i----~~~~~~~~~~~l~~--~~~dg--- 240 (451)
..+.+++|+|++ +++++.+. +..|++||+.+++....+. +...+ ..++|+|+|+.|+. +..++
T Consensus 255 ~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 255 YYITMVKWATST--KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp EEEEEEEESSSS--EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred ceeEEEEEeCCC--eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 788999999998 77766543 3579999999988766553 22333 37899999997775 45666
Q ss_pred ---cEEEEEc-cCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CCEEEEEcCC---CcEEEEeCCCCc--eEEEeec-
Q 012996 241 ---SIYIAAL-NAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GDLLISGSED---GMVRVWDPITHN--IVRMFRL- 308 (451)
Q Consensus 241 ---~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~l~s~~~d---g~i~iwd~~~~~--~~~~~~~- 308 (451)
.|++||. ..... .....+..+...+.. ++|+| ++.|+..+.+ +.+++|++.... ....+..
T Consensus 333 ~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 405 (723)
T 1xfd_A 333 KFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD 405 (723)
T ss_dssp CEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred ceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence 4666763 33210 002233333344444 69999 8888766554 789999986432 3444443
Q ss_pred --CCCCeeEEEEEecCceeeec
Q 012996 309 --AKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 309 --~~~~v~~l~~s~~~~~l~~~ 328 (451)
|...+..++|+|||++|+..
T Consensus 406 ~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 406 LVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SSSSCCCCEEEECTTSSEEEEE
T ss_pred ccCCCCeEEEEECCCCCEEEEE
Confidence 56779999999999988764
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.95 E-value=7.5e-25 Score=199.30 Aligned_cols=269 Identities=10% Similarity=0.085 Sum_probs=209.4
Q ss_pred ceEEecceEeeccCcccCCCCC------CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEE-EeccCCCEEEEEcC
Q 012996 38 GLACVGQRFLASSQLREQPSAS------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIA-GGGQSGDIYMWEVA 110 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d------~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 110 (451)
.+..++ |+|+++.+++++.+ ++.|.+||..+++..........+..++|+|+|++++ ++..++.|.+||..
T Consensus 42 ~~~~~~--~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 42 GAYEMA--YSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SEEEEE--EETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CccceE--ECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 455666 99999988887754 4799999999888766655556789999999999654 45557899999999
Q ss_pred CCcceeeeccccCC---------eeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCcee
Q 012996 111 SGRLLKKWHAHYRA---------VTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRIT 179 (451)
Q Consensus 111 ~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 179 (451)
+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+ ......+..+...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~-----------~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN-----------IKLKTAIQNTGKMST 188 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT-----------TEEEEEECCCCTTCC
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC-----------CceEEEecCCCCccc
Confidence 99988877654432 68899999999877766 478899999954 333444444555678
Q ss_pred EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCC-CcEEEEEccCCCCC
Q 012996 180 DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRD-GSIYIAALNAESPS 253 (451)
Q Consensus 180 ~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~ 253 (451)
+++|++++ +.+++++.++.|.+||+.+++....+.. ...+..++|+|+++++++++.+ +.|.+||..+..
T Consensus 189 ~~~~s~dg--~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-- 264 (353)
T 3vgz_A 189 GLALDSEG--KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-- 264 (353)
T ss_dssp CCEEETTT--TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC--
T ss_pred eEEECCCC--CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc--
Confidence 89999998 7888888999999999999988877763 3457789999999988777654 899999998763
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEE-EEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLI-SGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS 331 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d 331 (451)
.+..+..+. ...++|+| +++++ +...++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+++..+
T Consensus 265 -------~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 265 -------ILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp -------EEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEEC
T ss_pred -------EEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcc
Confidence 233333322 25799999 77554 4457999999999999999888764 468999999999988777665
Q ss_pred CC
Q 012996 332 NP 333 (451)
Q Consensus 332 ~~ 333 (451)
+.
T Consensus 335 ~~ 336 (353)
T 3vgz_A 335 KS 336 (353)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=2e-25 Score=230.87 Aligned_cols=316 Identities=11% Similarity=0.066 Sum_probs=235.6
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC-----CccEEEEECCCCceeeeecC
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-----SGSILYWSWSKPQVEVKSLP 79 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~g~i~vw~~~~~~~~~~~~~ 79 (451)
||.++ ++.|.+||+.+++.. .+.. |...+.+++ |||||+.||.++.+ +..|.+|+..++.......|
T Consensus 27 iaf~~--~~~l~~~~~~gg~~~-~lt~---~~~~v~~~~--~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt~~ 98 (1045)
T 1k32_A 27 IIFVC--CDDLWEHDLKSGSTR-KIVS---NLGVINNAR--FFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF 98 (1045)
T ss_dssp EEEEE--TTEEEEEETTTCCEE-EEEC---SSSEEEEEE--ECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC
T ss_pred EEEEE--CCcEEEEECCCCcEE-Eeee---CCCcccCeE--ECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcccC
Confidence 55555 368999999877653 4443 557788888 99999999987542 25899999998876655667
Q ss_pred CCCe-------eEEEECCCCcEEEEeccC------CCEEEEEcCCCcce-------------------------------
Q 012996 80 AEPI-------KPIAANSHGTYIAGGGQS------GDIYMWEVASGRLL------------------------------- 115 (451)
Q Consensus 80 ~~~v-------~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~------------------------------- 115 (451)
...+ ..++|+|||+++++++.+ ..|++|++.++...
T Consensus 99 ~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~ 178 (1045)
T 1k32_A 99 SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKG 178 (1045)
T ss_dssp CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTT
T ss_pred CCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCcccccc
Confidence 7777 899999999977777644 35888887655422
Q ss_pred ------------------eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh-hhh----------ccccc
Q 012996 116 ------------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC-ESQ----------RASHL 166 (451)
Q Consensus 116 ------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~----------~~~~~ 166 (451)
..+.+|...+.++.|+++ .++++++.|+.+.+|.+....... ... .....
T Consensus 179 ~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~ 257 (1045)
T 1k32_A 179 YRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGR 257 (1045)
T ss_dssp CCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSS
T ss_pred ccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCC
Confidence 112356777888999887 677788888999999764211000 000 00000
Q ss_pred ------------------ceecccC-----------CcCceeEEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996 167 ------------------YLHSFTG-----------HTLRITDIVIG-YGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (451)
Q Consensus 167 ------------------~~~~~~~-----------~~~~i~~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 216 (451)
.+..+.. |...+.+++|+ |++ ..+++++ ++.+.+|++..+.......
T Consensus 258 ~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG--~~la~~~-~~~i~~~~~~~~~~~~~~~ 334 (1045)
T 1k32_A 258 RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG--DLIAFVS-RGQAFIQDVSGTYVLKVPE 334 (1045)
T ss_dssp CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG--GCEEEEE-TTEEEEECTTSSBEEECSC
T ss_pred EEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC--CEEEEEE-cCEEEEEcCCCCceEEccC
Confidence 0111121 23368899999 988 7777777 7899999998877655444
Q ss_pred ccc-ceeEEEECCCCCEEEEEeCCCcEE-EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996 217 FPS-VIDAIALDPAEHVFYAGSRDGSIY-IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR 293 (451)
Q Consensus 217 ~~~-~i~~~~~~~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~ 293 (451)
+.. .+..++|+ +++.|+.++.++.+. +|++.... ...+.+|...+..++|+| +++|++++.++.|+
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~----------~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGK----------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCC----------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCC----------ceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence 566 89999999 999999999888888 99987653 223447888999999999 99999999999999
Q ss_pred EEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC----------CccccccCCCC
Q 012996 294 VWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN----------PHTSSRRHGSQ 343 (451)
Q Consensus 294 iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~----------~i~iw~~~~~~ 343 (451)
+||+.+++....+..|.+.+.+++|||||++|++++.++ .+++|+..++.
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999999998888878999999999999999999887654 89999987653
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=7.1e-25 Score=197.64 Aligned_cols=276 Identities=12% Similarity=0.120 Sum_probs=196.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcc-eeeecccc
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRL-LKKWHAHY 122 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~~ 122 (451)
|.+++..++++...++.|.+||..+++..... .+...+ +++|+|+|+++++++. ++.|.+||+.+++. ...+..+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC
Confidence 55666665555444499999999988775443 345556 9999999997666555 88999999999988 77777777
Q ss_pred CCeeEEEEccCCcEEEEeeCCC---cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996 123 RAVTCLVFSEDGSFLISGSEDG---CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~ 199 (451)
.+..+++|+|++++++++..++ .|.+||+.++ ..+..+.. .....+++|+|++. .++++...++
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~spdg~-~l~~~~~~~~ 150 (331)
T 3u4y_A 84 SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-----------KFISTIPI-PYDAVGIAISPNGN-GLILIDRSSA 150 (331)
T ss_dssp SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-----------EEEEEEEC-CTTEEEEEECTTSS-CEEEEEETTT
T ss_pred CCccceEECCCCCEEEEecCCCCcccEEEEECCCC-----------CeEEEEEC-CCCccceEECCCCC-EEEEEecCCC
Confidence 7666699999999999665553 8999999552 23333333 33458999999983 3455556668
Q ss_pred c-EEEEEcCCCcee-----eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 200 T-CKVWSLLKGRLL-----RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 200 ~-i~iwd~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
. |.+|++.....+ ..+.....+..++|+|+++++++++ .++.|++||+.+... ...+..+. +...+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------~~~~~~~~-~~~~~ 223 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN------ITLLNAVG-TNNLP 223 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS------CEEEEEEE-CSSCC
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc------cceeeecc-CCCCC
Confidence 8 999998764332 2223456689999999999766655 688999999987642 01134444 34677
Q ss_pred eEEEEec-CCEEEEEc-CCCcEEEEeCCCCce--EEEeecC----CCC---eeEEEEEecCceeeec-cCCCCccccccC
Q 012996 273 TCLAYST-GDLLISGS-EDGMVRVWDPITHNI--VRMFRLA----KGP---VNNILVVRRPLYLNLG-SFSNPHTSSRRH 340 (451)
Q Consensus 273 ~~~~~~~-~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~----~~~---v~~l~~s~~~~~l~~~-s~d~~i~iw~~~ 340 (451)
..++|+| ++++++++ .++.|.+||+.+++. +..+..+ ..+ ...++|+|+|++|+++ ..++.+.+|++.
T Consensus 224 ~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 224 GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 8999999 88666554 578899999999877 4444332 222 3568999999988655 456799999987
Q ss_pred CC
Q 012996 341 GS 342 (451)
Q Consensus 341 ~~ 342 (451)
+.
T Consensus 304 ~~ 305 (331)
T 3u4y_A 304 GK 305 (331)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=7.1e-26 Score=226.75 Aligned_cols=276 Identities=9% Similarity=0.001 Sum_probs=208.8
Q ss_pred CCceEEecceEeeccCcccCCCC-CCc-----cEEEEECCCCceeeeec-CC------------------------CCee
Q 012996 36 PHGLACVGQRFLASSQLREQPSA-SSG-----SILYWSWSKPQVEVKSL-PA------------------------EPIK 84 (451)
Q Consensus 36 ~~~v~~~~~~~~~~~~~l~~~~~-d~g-----~i~vw~~~~~~~~~~~~-~~------------------------~~v~ 84 (451)
...+..++ |+|+|++|++++. + + .|.+||+.+++...... +. ..|.
T Consensus 36 ~~~~~~~~--~SpdG~~la~~~~~d-~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPK--VAPDGSRVTFLRGKD-SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEE--ECTTSSEEEEEECCS-SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred CCCCCCce--EecCCCEEEEEeccC-CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 45577788 9999999999988 5 6 89999999887544332 21 2388
Q ss_pred EEEECCCCcEEEEeccCCCEEEEEcCCCc--ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 85 PIAANSHGTYIAGGGQSGDIYMWEVASGR--LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 85 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
+++|+|||++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|+.++. +.|.+||+.++.
T Consensus 113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~------- 183 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR------- 183 (741)
T ss_dssp CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE-------
T ss_pred eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC-------
Confidence 9999999999999876 899999998873 45566778889999999999999998874 589999996521
Q ss_pred ccccceecccCCcC----------------ceeEEEEeecCCeeEEEEeeCCC---------------------------
Q 012996 163 ASHLYLHSFTGHTL----------------RITDIVIGYGGVSATIVSASEDR--------------------------- 199 (451)
Q Consensus 163 ~~~~~~~~~~~~~~----------------~i~~i~~~~~~~~~~l~s~~~d~--------------------------- 199 (451)
.......+.. .+.++.|+|++ ++|++++.|+
T Consensus 184 ----~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg--~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 184 ----QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD--SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ----EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS--SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ----EEEeccCCccceeccccceeeeeccccccceEECCCC--CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 1111122222 24778999998 7888877665
Q ss_pred ------cEEEEEcCC-Cceeeee---ecccceeEEEECCCCCEEEEEeC-----CCcEEEEEccCCCCCCCCCCceeeee
Q 012996 200 ------TCKVWSLLK-GRLLRNI---VFPSVIDAIALDPAEHVFYAGSR-----DGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 200 ------~i~iwd~~~-~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
.|.+||+.+ ++..... .+...+..++| |+|+.|++++. +..|++||+.++. ....
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~---------~~~~ 327 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ---------QRVL 327 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---------EEEE
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---------eEEE
Confidence 789999988 7654433 25577899999 99999987754 5689999998764 2223
Q ss_pred eccCCc----ceeEEEEec-CCEEEEEcCCCcEEEEeCC-CCceEEEeecCCCCeeEE-EEEecCceee-eccCCC--Cc
Q 012996 265 LSDHSK----AVTCLAYST-GDLLISGSEDGMVRVWDPI-THNIVRMFRLAKGPVNNI-LVVRRPLYLN-LGSFSN--PH 334 (451)
Q Consensus 265 ~~~~~~----~v~~~~~~~-~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~l-~~s~~~~~l~-~~s~d~--~i 334 (451)
+..+.. .+..++|+| ++++++++.||.+.||.+. ++. ...+..|...|..+ .|+|+++.|+ +++.++ .+
T Consensus 328 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 328 AHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARES 406 (741)
T ss_dssp EEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCB
T ss_pred EEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceE
Confidence 333332 456899999 8899999999988888765 445 77888888888887 5999998775 455555 88
Q ss_pred cccccC
Q 012996 335 TSSRRH 340 (451)
Q Consensus 335 ~iw~~~ 340 (451)
++|++.
T Consensus 407 ~l~~~~ 412 (741)
T 2ecf_A 407 QIYAVP 412 (741)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.94 E-value=1.1e-25 Score=203.24 Aligned_cols=265 Identities=12% Similarity=0.074 Sum_probs=201.8
Q ss_pred cccCCCCCCccEEEEECCCCceeeeecCCC---CeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeecc-c----c
Q 012996 52 LREQPSASSGSILYWSWSKPQVEVKSLPAE---PIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHA-H----Y 122 (451)
Q Consensus 52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~-~----~ 122 (451)
++++++.+ +.|.+||..+++......... .+..++|+|+++++ +++..++.|.+||+.+++.+..+.. + .
T Consensus 3 ~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 3 YILAPARP-DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEETT-TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEcCCC-CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 45666666 999999999887765554444 68999999999766 5556678999999999988776653 2 2
Q ss_pred CCeeEEEEccCCcEEEEee------------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 123 RAVTCLVFSEDGSFLISGS------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
..+.+++|+|+++++++++ .++.|.+||+.+. .....+.. ...+.+++|++++ +
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----------~~~~~~~~-~~~~~~~~~s~dg--~ 147 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----------SRRKAFEA-PRQITMLAWARDG--S 147 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------EEEEEEEC-CSSCCCEEECTTS--S
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-----------cEEEEEeC-CCCcceeEECCCC--C
Confidence 3678899999999988886 5799999999542 22233332 3456788999988 6
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC------------------------cEEEEE
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG------------------------SIYIAA 246 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------------------------~i~i~d 246 (451)
+++++ ++.|.+||+.+++....+........+.|+|++..+++.+..+ .|.+||
T Consensus 148 ~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d 225 (337)
T 1pby_B 148 KLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp CEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence 67766 6889999999998887776433222347899988776655433 468899
Q ss_pred ccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee
Q 012996 247 LNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL 325 (451)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l 325 (451)
+.+... . ...+..+...+.+++|+| +++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus 226 ~~~~~~-------~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 226 LETGEM-------A-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTV 294 (337)
T ss_dssp TTTCCE-------E-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEE
T ss_pred CCCCCc-------e-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEE
Confidence 887641 1 333445667888999999 8888888 799999999999988888754 567899999999999
Q ss_pred eeccCCCCccccccCCCCC
Q 012996 326 NLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 326 ~~~s~d~~i~iw~~~~~~~ 344 (451)
++++.++.+.+|+..+...
T Consensus 295 ~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEESBSSEEEEEETTTCCE
T ss_pred EEEcCCCcEEEEECcCCcE
Confidence 9999999999999886543
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=7.5e-25 Score=193.92 Aligned_cols=253 Identities=13% Similarity=0.075 Sum_probs=189.6
Q ss_pred cCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-Cceeeee-cC-CCCee
Q 012996 8 SSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-PQVEVKS-LP-AEPIK 84 (451)
Q Consensus 8 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-~~~~~~~-~~-~~~v~ 84 (451)
++ .|+.|.+||+.+++..... . +...+.+++ |+|+|+++++++ + +.|.+||+.+ +...... .+ ...+.
T Consensus 18 ~~-~~~~i~~~d~~~~~~~~~~-~---~~~~v~~~~--~spdg~~l~~~~-~-~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 18 GS-MRSSIEIFNIRTRKMRVVW-Q---TPELFEAPN--WSPDGKYLLLNS-E-GLLYRLSLAGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp CC-CCEEEEEEETTTTEEEEEE-E---ESSCCEEEE--ECTTSSEEEEEE-T-TEEEEEESSSCCSCEECCCTTCCCBCS
T ss_pred CC-cceeEEEEeCCCCceeeec-c---CCcceEeeE--ECCCCCEEEEEc-C-CeEEEEeCCCCCCceEecccccccccc
Confidence 45 7899999999988876443 3 346677888 999999999876 4 8999999988 6654433 22 46789
Q ss_pred EEEECCCCcEEEEec--cCCCEEEE--EcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhh
Q 012996 85 PIAANSHGTYIAGGG--QSGDIYMW--EVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 85 ~~~~~~~~~~l~~~~--~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+++|+|++++|++++ .++...|| +..++. ...+..+ ..+..++|+|++++|+ +++.++.+.+|++..
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~------ 160 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDI------ 160 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEET------
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEEC------
Confidence 999999999999988 33455555 444444 3444433 3488999999999877 788899999999742
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC-CCceeeeee-cccceeEEEECCCCCEEEEE
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL-KGRLLRNIV-FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~-~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~ 236 (451)
.......+..|...+.+++|+|++ ..++.++ .++.+++|++. .+.....+. +...+.+++|+|++++|+++
T Consensus 161 ----~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 161 ----DSGVETRLTHGEGRNDGPDYSPDG--RWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp ----TTCCEEECCCSSSCEEEEEECTTS--SEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred ----CCCcceEcccCCCccccceECCCC--CEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 112234556678889999999988 6666555 68999999886 444444444 66788999999999999888
Q ss_pred eCC-----------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996 237 SRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 237 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
+.+ +.|++||+.+... ..+..+.+|...+.+++|+| +.+|++++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNV-------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSC-------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EcCCCCCcccccCceEEEEEecCCCCc-------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 765 5699999987642 34555567888999999999 99888887654
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3.7e-25 Score=221.02 Aligned_cols=275 Identities=8% Similarity=-0.004 Sum_probs=194.7
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-CC---CeeEEEECCCCcEEEEeccC---------CCEE
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE---PIKPIAANSHGTYIAGGGQS---------GDIY 105 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~---~v~~~~~~~~~~~l~~~~~d---------g~i~ 105 (451)
...++ |+|+|+++++ +.+ |+|++||..+++......+ .. .|.+++|||||++|++++.+ +.++
T Consensus 19 ~~~~~--~spdg~~~~~-~~d-g~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAK--WISDTEFIYR-EQK-GTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCC--BSSSSCBCCC-CSS-SCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccE--EcCCCcEEEE-eCC-CCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 34455 9999997766 555 9999999988876544433 22 49999999999999998764 6788
Q ss_pred EEEcCCCcc--eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcC-------
Q 012996 106 MWEVASGRL--LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTL------- 176 (451)
Q Consensus 106 iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~------- 176 (451)
+||+.+++. +.....|...+..++|+|||+.|+.++. +.|.+||+.++. .......+..
T Consensus 95 ~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-----------~~~~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 95 LSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-----------AIRVVSTGKEGVIYNGL 162 (723)
T ss_dssp EEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-----------CEEEECCCBTTTEEEEE
T ss_pred EEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-----------eEEEecCCCCCceECcc
Confidence 999998876 2222345556889999999999999886 799999996521 1222222222
Q ss_pred -----------ceeEEEEeecCCeeEEEEeeCCC----------------------------------cEEEEEcCCCce
Q 012996 177 -----------RITDIVIGYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRL 211 (451)
Q Consensus 177 -----------~i~~i~~~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~ 211 (451)
.+.+++|+|++ +.|++++.++ .|++||+.+++.
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~ 240 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDG--TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH 240 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTS--SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC
T ss_pred cceeEEEEeccCcceEEECCCC--CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce
Confidence 23789999998 7888776543 799999998875
Q ss_pred eeeeec-------ccceeEEEECCCCCEEEEEeC----CCcEEEEEccCCCCCCCCCCceeeeeec-cCCcce----eEE
Q 012996 212 LRNIVF-------PSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAV----TCL 275 (451)
Q Consensus 212 ~~~~~~-------~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~ 275 (451)
...+.. ...+..++|+|+|+++++... +..|++||+.++. ....+. .+...+ ..+
T Consensus 241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV---------CTKKHEDESEAWLHRQNEEP 311 (723)
T ss_dssp CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC---------EEEEEEEECSSCCCCCCCCC
T ss_pred eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc---------ceEEEEeccCCEEeccCCCc
Confidence 444442 467899999999998877653 3579999998764 122222 233433 378
Q ss_pred EEec-CCEEEE--EcCCC------cEEEEe-CCCCc--eEEEeecCCCCeeE-EEEEecCceeeeccCC---CCcccccc
Q 012996 276 AYST-GDLLIS--GSEDG------MVRVWD-PITHN--IVRMFRLAKGPVNN-ILVVRRPLYLNLGSFS---NPHTSSRR 339 (451)
Q Consensus 276 ~~~~-~~~l~s--~~~dg------~i~iwd-~~~~~--~~~~~~~~~~~v~~-l~~s~~~~~l~~~s~d---~~i~iw~~ 339 (451)
+|+| |+.|+. +..++ .|.+|| ...+. +...+..+...+.. ++|+|||+.|+..+.+ +.+.+|++
T Consensus 312 ~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred eEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 9999 886664 45666 577788 34444 15555544445554 6999999999766554 78999987
Q ss_pred C
Q 012996 340 H 340 (451)
Q Consensus 340 ~ 340 (451)
.
T Consensus 392 ~ 392 (723)
T 1xfd_A 392 N 392 (723)
T ss_dssp C
T ss_pred e
Confidence 5
No 146
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.4e-24 Score=224.67 Aligned_cols=293 Identities=12% Similarity=0.039 Sum_probs=224.6
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceeeeecCCCCeeEEEEC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPAEPIKPIAAN 89 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~~~~~~~~v~~~~~~ 89 (451)
+....+|....+.....+. +|...+.++. |+++ .+++++..+ +.+.+|.++ .........+ ..+...+|+
T Consensus 182 ~~~~~lw~~~~~~~~~~l~---~~~~~v~~~~--~s~d-~l~~~~~~d-g~~~l~~~~~~g~~~~~l~~~-~~~~~~~~S 253 (1045)
T 1k32_A 182 GTRGKIWIEVNSGAFKKIV---DMSTHVSSPV--IVGH-RIYFITDID-GFGQIYSTDLDGKDLRKHTSF-TDYYPRHLN 253 (1045)
T ss_dssp TTCCEEEEEEETTEEEEEE---CCSSCCEEEE--EETT-EEEEEECTT-SSCEEEEEETTSCSCEECCCC-CSSCEEEEE
T ss_pred CCcCCEEEECCCCCeEECc---CCCCcccceE--EeCC-EEEEEEecc-CceEEEEEeCCCCcceEecCC-CCcceeeEc
Confidence 3456777655444455554 4556677777 9887 555555555 899999865 3333222223 357788999
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCcceeeecc-----------ccCCeeEEEEc-cCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHA-----------HYRAVTCLVFS-EDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
|+|++|+.+ .++.|++|++... .+..+.. |...+.+++|+ |||+.|++++ ++.|.+|++..+
T Consensus 254 pDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~--- 327 (1045)
T 1k32_A 254 TDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT--- 327 (1045)
T ss_dssp ESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS---
T ss_pred CCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC---
Confidence 999999887 5889999998443 3335444 44578999999 9999999887 789999998541
Q ss_pred hhhhcccccceecccCCcC-ceeEEEEeecCCeeEEEEeeCCCcEE-EEEcCCCceeeeeecccceeEEEECCCCCEEEE
Q 012996 158 CESQRASHLYLHSFTGHTL-RITDIVIGYGGVSATIVSASEDRTCK-VWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~l~s~~~d~~i~-iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 235 (451)
. ...+..|.. .+..++|+ ++ ..+++++.++.+. +||+.+++......+...+..++|+|+|++|++
T Consensus 328 --------~-~~~~~~~~~~~~~~~~~s-dg--~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~ 395 (1045)
T 1k32_A 328 --------Y-VLKVPEPLRIRYVRRGGD-TK--VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV 395 (1045)
T ss_dssp --------B-EEECSCCSCEEEEEECSS-SE--EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE
T ss_pred --------c-eEEccCCCcceEEeeeEc-CC--CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEE
Confidence 1 233556777 88999999 76 7888888888888 999987765544445678999999999999999
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC----------cEEEEeCCCCceEE
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG----------MVRVWDPITHNIVR 304 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg----------~i~iwd~~~~~~~~ 304 (451)
++.++.|++||+.++. ......+|...+.+++|+| +++|++++.++ .|++||+.+++ +.
T Consensus 396 ~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~ 465 (1045)
T 1k32_A 396 ANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF 465 (1045)
T ss_dssp EETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred ECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence 9999999999998763 3344557889999999999 99998887654 89999999887 67
Q ss_pred EeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 305 MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 305 ~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.+..|...+..++|+|||++|++++.++....|+..
T Consensus 466 ~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 466 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 778888889999999999999999998888888754
No 147
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=1e-22 Score=184.74 Aligned_cols=264 Identities=10% Similarity=0.109 Sum_probs=184.8
Q ss_pred ccEEEEECC--CCceee--eecCCCCeeEEEECCCCcEEEEecc---CCCEEEEEcCCCc--ceeeeccccCCeeEEEEc
Q 012996 61 GSILYWSWS--KPQVEV--KSLPAEPIKPIAANSHGTYIAGGGQ---SGDIYMWEVASGR--LLKKWHAHYRAVTCLVFS 131 (451)
Q Consensus 61 g~i~vw~~~--~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~ 131 (451)
+.|.+|.++ ++.... ...+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 667777765 444332 223456788999999999 554443 6899999997665 344545677888999999
Q ss_pred cCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceeccc---------CCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 132 EDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFT---------GHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 132 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
|++++|++++ .++.|.+|++... .....+..+. .+...+.+++|+|++ +++++...++.|
T Consensus 95 pdg~~l~~~~~~~~~v~v~~~~~~--------g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg--~l~v~~~~~~~v 164 (347)
T 3hfq_A 95 EARQLVYSANYHKGTAEVMKIAAD--------GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDN--RLAVIDLGSDKV 164 (347)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTT--------SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTS--CEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCCEEEEEEeCCC--------CCeeecceeecCCCCCCccccCCCceEEEECCCC--cEEEEeCCCCEE
Confidence 9999888887 6789999998531 0111111111 123357889999998 666777778899
Q ss_pred EEEEcC-CCceeee--ee--cccceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC------
Q 012996 202 KVWSLL-KGRLLRN--IV--FPSVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------ 269 (451)
Q Consensus 202 ~iwd~~-~~~~~~~--~~--~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------ 269 (451)
.+|++. +++.... +. ....+..++|+|+|+++++ +..++.|.+|++...... ...+..+....
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-----~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-----FTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-----EEEEEEEESSCTTCCSC
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-----eEEeeeeeecCCCCCCC
Confidence 999998 4543322 22 2346788999999997666 456789999998852110 11222222222
Q ss_pred cceeEEEEec-CCEE-EEEcCCCcEEEEeCC---CCceEEEeecCCCCeeEEEEEecCceeeeccCC-CCccccccC
Q 012996 270 KAVTCLAYST-GDLL-ISGSEDGMVRVWDPI---THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-NPHTSSRRH 340 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d-~~i~iw~~~ 340 (451)
..+..++|+| +++| ++...++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.+.+|++.
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 4588999999 8877 555668999999987 335566666666778999999999988887654 889999554
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2e-22 Score=183.20 Aligned_cols=249 Identities=12% Similarity=0.109 Sum_probs=190.7
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC-CC---------
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP-AE--------- 81 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~-~~--------- 81 (451)
++.|.+||..+++.+..+.... .+ ..++ |+|+|+++++++..++.|.+||..+++....... ..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-~~---~~~~--~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-KP---FGAT--INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-CC---CSEE--EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCC-Cc---ceEE--ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 6789999999999988886533 23 3344 9999997776666559999999998876544322 11
Q ss_pred CeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.+.+++|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.++
T Consensus 142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~----- 216 (353)
T 3vgz_A 142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN----- 216 (353)
T ss_dssp EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT-----
T ss_pred CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC-----
Confidence 278899999999887765 4788999999999988888766667899999999999999999999999999652
Q ss_pred hhcccccceeccc----CCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996 160 SQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 160 ~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (451)
.....+. ++...+.+++|++++ +.+++++ .++.|.+||+.+++.+..+..... ..++|+|++++++
T Consensus 217 ------~~~~~~~~~~~~~~~~~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 217 ------KILSRKKLLDDGKEHFFINISLDTAR--QRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAY 287 (353)
T ss_dssp ------EEEEEEECCCSSSCCCEEEEEEETTT--TEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEE
T ss_pred ------eEEEEEEcCCCCCCcccceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEE
Confidence 2222222 355678889999988 5555544 559999999999998888875443 6799999999776
Q ss_pred EEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC
Q 012996 235 AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 235 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg 290 (451)
+++ .++.|.+||..+. +.+..+.. ...+.+++|+| +++|+++..++
T Consensus 288 v~~~~~~~v~~~d~~~~---------~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSY---------KVVKTFDT-PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEETTTTEEEEEETTTT---------EEEEEEEC-CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCeEEEEECCCC---------eEEEEEec-CCCCCeEEEcCCCCEEEEEEccc
Confidence 665 6899999999875 33444443 34779999999 88777766654
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=9.8e-23 Score=184.88 Aligned_cols=282 Identities=12% Similarity=0.142 Sum_probs=186.0
Q ss_pred CeEEEeecCC---CCCCeEEEECc--cCceee-eeecCCCCCCceEEecceEeeccCcccCCCC--CCccEEEEECCCCc
Q 012996 1 MELLIASSSV---ADTGIGCWDLE--SGAEQL-RYKSCASPPHGLACVGQRFLASSQLREQPSA--SSGSILYWSWSKPQ 72 (451)
Q Consensus 1 ~e~~l~s~~~---~dg~i~vwd~~--~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~g~i~vw~~~~~~ 72 (451)
|.-.+++|++ .++.|.+|++. +++... ....+. .....++ |+|+|+ +++++. +++.|.+|++.++.
T Consensus 1 ~~~~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~---~~p~~~a--~spdg~-l~~~~~~~~~~~v~~~~~~~g~ 74 (347)
T 3hfq_A 1 MQERILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAAT---QNPTYLA--LSAKDC-LYSVDKEDDEGGIAAWQIDGQT 74 (347)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEEC---SCCCCEE--ECTTCE-EEEEEEETTEEEEEEEEEETTE
T ss_pred CCcEEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeecc---CCcceEE--EccCCe-EEEEEecCCCceEEEEEecCCc
Confidence 4444455421 45678887765 455432 122222 3334455 999999 555543 24899999997665
Q ss_pred eeee---ecCCCCeeEEEECCCCcEEEEec-cCCCEEEEEcCC-Cc--ceeeecc---------ccCCeeEEEEccCCcE
Q 012996 73 VEVK---SLPAEPIKPIAANSHGTYIAGGG-QSGDIYMWEVAS-GR--LLKKWHA---------HYRAVTCLVFSEDGSF 136 (451)
Q Consensus 73 ~~~~---~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~ 136 (451)
.... ..+...+..++|+|+|++|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+|++++
T Consensus 75 ~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 75 AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 4322 23567889999999999888877 678999999953 32 2222221 1234888999999996
Q ss_pred EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC--Cce-
Q 012996 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK--GRL- 211 (451)
Q Consensus 137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~--~~~- 211 (451)
+++...++.|.+|++... ........+.. ....+..++|+|++ +++ +++..++.|.+|++.. ++.
T Consensus 155 ~v~~~~~~~v~~~~~~~~--------g~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDA--------GQLSEQSVLTMEAGFGPRHLVFSPDG--QYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEEETTTTEEEEEEECTT--------SCEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEeCCCCEEEEEEECCC--------CcEEEeeeEEcCCCCCCceEEECCCC--CEEEEEeCCCCEEEEEEecCCCCceE
Confidence 666667889999999621 11111111122 22356789999998 644 4566788999999874 443
Q ss_pred -eeeee-cc------cceeEEEECCCCCEEEE-EeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996 212 -LRNIV-FP------SVIDAIALDPAEHVFYA-GSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (451)
Q Consensus 212 -~~~~~-~~------~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 281 (451)
+..+. .+ ..+..++|+|+|++|++ ...++.|.+|++.... ....+..+..+...+..++|+| ++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~spdg~ 298 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG------HLTLIQQISTEGDFPRDFDLDPTEA 298 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG------CEEEEEEEECSSSCCCEEEECTTSS
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC------cEEEeEEEecCCCCcCeEEECCCCC
Confidence 22222 12 45888999999998855 4568999999997321 1244556666677789999999 88
Q ss_pred EEEEEcC-CCcEEEE--eCCCCceEE
Q 012996 282 LLISGSE-DGMVRVW--DPITHNIVR 304 (451)
Q Consensus 282 ~l~s~~~-dg~i~iw--d~~~~~~~~ 304 (451)
+|++++. ++.|.+| |..++++..
T Consensus 299 ~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 299 FVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 8887765 4899999 656676553
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.92 E-value=3e-23 Score=188.37 Aligned_cols=272 Identities=10% Similarity=0.022 Sum_probs=188.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCC--CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccc-
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE--PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAH- 121 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~- 121 (451)
+++++.++++++.+ +.|.+||..+++......... .+..++|+|++++++ ++..++.|.+||+.+++.+..+..+
T Consensus 7 ~~~~~~~~v~~~~~-~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 7 LKAGHEYMIVTNYP-NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCTTCEEEEEEETT-TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred ccCCCEEEEEeCCC-CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 67778888888777 999999999887665443334 688999999998654 5567889999999999887766533
Q ss_pred -----cCCeeEEEEccCCcEEEEeeCC------------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 122 -----YRAVTCLVFSEDGSFLISGSED------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 122 -----~~~v~~~~~~~~~~~l~s~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
...+.+++|+|+|++|++++.+ +.|.+||+.++.. ...+..+. +...+.+++|+
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--------~~~~~~~~-~~~~~~~~~~s 156 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE--------AKPVRTFP-MPRQVYLMRAA 156 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG--------BCCSEEEE-CCSSCCCEEEC
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc--------cceeeecc-CCCcccceeEC
Confidence 2337899999999999998865 8999999965311 11122222 33467889999
Q ss_pred ecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccc-------------------------ceeEEEECCCCCEEEEEeCC
Q 012996 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------------------VIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~i~~~~~~~~~~~l~~~~~d 239 (451)
+++ + +++++ +.|.+||+.+++....+.... ....+++++++.........
T Consensus 157 ~dg--~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 157 DDG--S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp TTS--C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred CCC--c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 998 6 55543 349999999998877665332 34456666544211110000
Q ss_pred C-cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEE
Q 012996 240 G-SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNI 316 (451)
Q Consensus 240 g-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l 316 (451)
. .+..++..+.. .....+..+...+.+++|+| +++++++ ++.|.+||+.+++.+..+... ..+.++
T Consensus 232 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~ 300 (349)
T 1jmx_B 232 LYGYLSVDLKTGK--------THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCV 300 (349)
T ss_dssp EEEEEEEETTTCC--------EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEE
T ss_pred ceeEEEEeccCCc--------EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccce
Confidence 1 11123443332 11112223556788999998 6677777 889999999999988888753 457899
Q ss_pred EEEecCceeeeccCCCCccccccCCCC
Q 012996 317 LVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 317 ~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+|+|++++|++++.++.+.+|+..+.+
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred EECCCCCEEEEecCCCeEEEEeccccc
Confidence 999999999988889999999987654
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.91 E-value=2.5e-23 Score=207.53 Aligned_cols=319 Identities=11% Similarity=0.029 Sum_probs=211.0
Q ss_pred eecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC--------CccEEEEECCCCceeeee
Q 012996 6 ASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS--------SGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 6 ~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d--------~g~i~vw~~~~~~~~~~~ 77 (451)
+..+ .|+.|++||+.+++....+..+......+..++ |||||++|++++.. ++.|++||+.+++.....
T Consensus 30 ~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~ 106 (719)
T 1z68_A 30 LHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYG--LSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN 106 (719)
T ss_dssp EEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS
T ss_pred EEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEE--ECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce
Confidence 3344 589999999999988766543321112366777 99999999988761 289999999988762111
Q ss_pred cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee-ccccCCe-----------------eEEEEccCCcEEEE
Q 012996 78 LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW-HAHYRAV-----------------TCLVFSEDGSFLIS 139 (451)
Q Consensus 78 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~l~s 139 (451)
.....+..++|||||+.||.+. ++.|++|++.+++..... .++...| .+++|+|||++|++
T Consensus 107 ~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~ 185 (719)
T 1z68_A 107 ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAY 185 (719)
T ss_dssp CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEE
T ss_pred ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEE
Confidence 1235789999999999999875 789999999888765432 2332222 48999999999999
Q ss_pred eeCCC----------------------------------cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee
Q 012996 140 GSEDG----------------------------------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY 185 (451)
Q Consensus 140 ~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 185 (451)
++.|. .|.+||+.++..... ........+.+|...+.+++|+|
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Sp 262 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGP---QEVPVPAMIASSDYYFSWLTWVT 262 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCC---EECCCCHHHHTSCEEEEEEEESS
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccce---eEccCCccCCCCcceEEEeEEeC
Confidence 87652 788999866321100 00000023456888999999999
Q ss_pred cCCeeEEEEeeCC----CcEEEEE----cCCCceeeee-----eccccee-----EEEECCCCCEEEE--EeCCC--cEE
Q 012996 186 GGVSATIVSASED----RTCKVWS----LLKGRLLRNI-----VFPSVID-----AIALDPAEHVFYA--GSRDG--SIY 243 (451)
Q Consensus 186 ~~~~~~l~s~~~d----~~i~iwd----~~~~~~~~~~-----~~~~~i~-----~~~~~~~~~~l~~--~~~dg--~i~ 243 (451)
++ .++++.... ..|.+|| +.+++....+ .+...+. .+.|+|+|+.++. +..+| .|+
T Consensus 263 D~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 263 DE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred CC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence 96 677764433 2488899 7777665544 2444555 7899999996654 44555 466
Q ss_pred EEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcC-----CCcEEEEeCCC--Cc-eEEEeec----CCC
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSE-----DGMVRVWDPIT--HN-IVRMFRL----AKG 311 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~-----dg~i~iwd~~~--~~-~~~~~~~----~~~ 311 (451)
+||+.+.. ...+..+...+..+.++.++.|+..+. ++...+|.+.. +. ....+.. |..
T Consensus 341 ~~~~~~~~----------~~~lt~~~~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~ 410 (719)
T 1z68_A 341 YIKDTVEN----------AIQITSGKWEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC 410 (719)
T ss_dssp EESSCSTT----------CEECSCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred EEECCCCc----------eEecccCceEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence 66765542 234445555666655557444444444 48888998754 32 1233332 556
Q ss_pred CeeEEEEEecCceeee-ccCC--CCccccccCCCC
Q 012996 312 PVNNILVVRRPLYLNL-GSFS--NPHTSSRRHGSQ 343 (451)
Q Consensus 312 ~v~~l~~s~~~~~l~~-~s~d--~~i~iw~~~~~~ 343 (451)
.+..+.|+|++++++. ++.+ ..+.+|+..++.
T Consensus 411 ~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 411 QYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp CBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred ceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 7889999999998874 3333 346778775443
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=1.2e-22 Score=202.34 Aligned_cols=275 Identities=14% Similarity=0.121 Sum_probs=188.3
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC-----Cceeeeec-CCCC---
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK-----PQVEVKSL-PAEP--- 82 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~-----~~~~~~~~-~~~~--- 82 (451)
++.|.+||+.+++..... .+. ..+..++ |+|+|+.++++ .+ +.|.+|++.+ ++...... +...
T Consensus 100 ~~~i~~~d~~~~~~~~l~-~~~---~~~~~~~--~SpdG~~la~~-~~-~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLF-DTN---EETASLD--FSPVGDRVAYV-RN-HNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp TTEEEEEETTTTEEEEEE-CCT---TCCTTCE--ECTTSSEEEEE-ET-TEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred CCEEEEEECCCCceEEcc-CCc---ccccCCc--CCCCCCEEEEE-EC-CeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 589999999988765433 333 2344445 99999999985 44 8999999987 65543222 2222
Q ss_pred -----------eeEEEECCCCcEEEEec---------------------------------cCCCEEEEEcCCCcceeee
Q 012996 83 -----------IKPIAANSHGTYIAGGG---------------------------------QSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 83 -----------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 118 (451)
+.++.|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 58999999999999987 3467999999988765443
Q ss_pred --ccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCc---CceeEEEEee--c
Q 012996 119 --HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHT---LRITDIVIGY--G 186 (451)
Q Consensus 119 --~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~i~~~~--~ 186 (451)
..|...+.+++|+|||+.|++++.++ .|.+||+.++. ....+.. ..+. ..+.+++|+| +
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~~sp~~d 322 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--------FVRTLFV-ETDKHYVEPLHPLTFLPGSN 322 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--------EEEEEEE-EECSSCCCCCSCCEECTTCS
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--------eeeEEEE-ccCCCeECccCCceeecCCC
Confidence 25677899999999999999888775 89999996521 0011110 1111 2346788999 7
Q ss_pred CCeeEEEEeeCCCcEEEEEcC-CCceeeeee-cccceeE-EEECCCCCEEEEEeCC-C----cEEEEEccCCCCCCCCCC
Q 012996 187 GVSATIVSASEDRTCKVWSLL-KGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRD-G----SIYIAALNAESPSTSSYG 258 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~d-g----~i~i~d~~~~~~~~~~~~ 258 (451)
+ .++++++.++.+++|++. ++..+..+. +...+.. ++|+|+++.|+.++.+ + .|+.||+.++.
T Consensus 323 g--~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~------- 393 (706)
T 2z3z_A 323 N--QFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK------- 393 (706)
T ss_dssp S--EEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------
T ss_pred C--EEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------
Confidence 7 789999999999999876 566555554 4555666 7999999888766544 3 56666665542
Q ss_pred ceeeeeeccCCcceeEEEEec-CCEEEEEcCC----CcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996 259 MHIIGSLSDHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (451)
Q Consensus 259 ~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (451)
...+ .|...+.+++|+| +++++..+.+ +.|.+||+.+++ ...+. +..++....+
T Consensus 394 ---~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~-~~~~~~~~~~ 452 (706)
T 2z3z_A 394 ---TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE-AKNPDTGYAM 452 (706)
T ss_dssp ---CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE-CC------CC
T ss_pred ---ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc-ccchhhhcCC
Confidence 1222 2567789999999 8888776443 569999998887 33333 3334444434
No 153
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.91 E-value=4e-23 Score=200.78 Aligned_cols=268 Identities=12% Similarity=0.043 Sum_probs=196.6
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCC-CCeeEEEECCCCcEEEEecc---CCCEEEEEcCC-
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPA-EPIKPIAANSHGTYIAGGGQ---SGDIYMWEVAS- 111 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~- 111 (451)
..+.+++ |+|||+.||.++..+|++.||+++++.......+. ..+..++|+|| +++++++. +....+|.+..
T Consensus 22 ~~~~~~~--~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 22 VEKYSLQ--GVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp SCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred cchheee--cCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3577888 99999999998873499999999777665555454 58999999999 77777654 45566665543
Q ss_pred --CcceeeeccccCCeeEEEEccCCcE-EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 112 --GRLLKKWHAHYRAVTCLVFSEDGSF-LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 112 --~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
+... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.++ ... .+..+.. .+++|+|+|
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g-----------~~~-~l~~~~~--~~~~~spDG- 161 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGG-----------GLR-ELARLPG--FGFVSDIRG- 161 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT-----------EEE-EEEEESS--CEEEEEEET-
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCC-----------cEE-EeecCCC--ceEEECCCC-
Confidence 2222 33322 23446688887753 333344455669998552 111 1222222 788999999
Q ss_pred eeEEEEeeCC----CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCceee
Q 012996 189 SATIVSASED----RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHII 262 (451)
Q Consensus 189 ~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~ 262 (451)
+++++++.+ +.|++||+.+++......+...+..++|+|+|+.|+++..++ .|++||+.++. ..
T Consensus 162 -~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~---------~~ 231 (582)
T 3o4h_A 162 -DLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS---------VE 231 (582)
T ss_dssp -TEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC---------EE
T ss_pred -CEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc---------EE
Confidence 788887777 789999999888765555778899999999999999888888 89999998764 22
Q ss_pred eeeccCCcceeEEE--------Eec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996 263 GSLSDHSKAVTCLA--------YST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 263 ~~~~~~~~~v~~~~--------~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
.+.+|...+..++ |+| +.++++++.||.+++|++ ++.+. .+.+.|.+++|+ +++++++++.+..
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 232 -DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp -ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTE
T ss_pred -EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCC
Confidence 5566777777777 999 988899999999999999 66554 345679999999 9999988887754
Q ss_pred ---ccccccCC
Q 012996 334 ---HTSSRRHG 341 (451)
Q Consensus 334 ---i~iw~~~~ 341 (451)
+.+|+..+
T Consensus 305 p~~l~~~d~~~ 315 (582)
T 3o4h_A 305 PPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEETTCC
T ss_pred CCeEEEEcCCC
Confidence 66666553
No 154
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=1.5e-22 Score=188.38 Aligned_cols=262 Identities=13% Similarity=0.095 Sum_probs=177.1
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc----------ceee-----eccccCCe
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR----------LLKK-----WHAHYRAV 125 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~-----~~~~~~~v 125 (451)
+.+++|+.... .+...+..+++++++.++++++.++ +++|+..... .+.. ...+...|
T Consensus 23 ~~vri~~~~~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (434)
T 2oit_A 23 KKVRIFDSPEE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPI 95 (434)
T ss_dssp CEEECSCCCSS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCE
T ss_pred eeEEecCCccc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcc
Confidence 46777764211 2345689999999999999999887 9998763211 0110 11356679
Q ss_pred eEEEEccCCcEEE----EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 126 TCLVFSEDGSFLI----SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 126 ~~~~~~~~~~~l~----s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
.+++|+|++++|+ +|+.|+.|++||+.+.................+.+|...|.+++|+|+.. .+|++++.||+|
T Consensus 96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-~~las~s~Dg~v 174 (434)
T 2oit_A 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVP-SMVAVCLADGSI 174 (434)
T ss_dssp EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCT-TEEEEEETTSCE
T ss_pred cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCC-CEEEEEECCCeE
Confidence 9999999999999 88899999999996531100000001112456678999999999999732 799999999999
Q ss_pred EEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-------cCCccee
Q 012996 202 KVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-------DHSKAVT 273 (451)
Q Consensus 202 ~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~v~ 273 (451)
++||++++....... |...+.+++|+|++++|++|+.||.|++||.+. . ....+. .|...|.
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~-~---------~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL-Q---------EKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC-C---------EEEEECCCTTCCTTSCEEEE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC-c---------ccccccCCcccCCCCceeEE
Confidence 999999886654433 678999999999999999999999999999982 2 111221 2445899
Q ss_pred EEEEec-CCEEEEE-cCCC------cEEEEeCCCCc-----eEEEee-------cCCCCeeEEEEEecCceeeecc-CCC
Q 012996 274 CLAYST-GDLLISG-SEDG------MVRVWDPITHN-----IVRMFR-------LAKGPVNNILVVRRPLYLNLGS-FSN 332 (451)
Q Consensus 274 ~~~~~~-~~~l~s~-~~dg------~i~iwd~~~~~-----~~~~~~-------~~~~~v~~l~~s~~~~~l~~~s-~d~ 332 (451)
+++|++ +.++++. +.|| .+++|++.... ....+. ....+-..+.+-++.+++++++ ..+
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 999999 5555443 3343 38999987642 111211 1122223334447777765544 344
Q ss_pred CccccccC
Q 012996 333 PHTSSRRH 340 (451)
Q Consensus 333 ~i~iw~~~ 340 (451)
.+-+....
T Consensus 325 dv~vl~~~ 332 (434)
T 2oit_A 325 EVSILARQ 332 (434)
T ss_dssp BCEEEEEC
T ss_pred ceeEEEec
Confidence 45555543
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.91 E-value=2e-21 Score=176.21 Aligned_cols=267 Identities=12% Similarity=0.073 Sum_probs=184.1
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC---
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--- 79 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--- 79 (451)
.++++++ .++.|.+||+.+++.+..+..... .....++ |+|+|+.+++++..++.|.+||..+++.......
T Consensus 12 ~~~v~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~--~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 12 EYMIVTN-YPNNLHVVDVASDTVYKSCVMPDK--FGPGTAM--MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp EEEEEEE-TTTEEEEEETTTTEEEEEEECSSC--CSSCEEE--ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred EEEEEeC-CCCeEEEEECCCCcEEEEEecCCC--CCCceeE--ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc
Confidence 4677888 899999999999998888764321 1244556 9999987766555449999999998876544322
Q ss_pred ----CCCeeEEEECCCCcEEEEeccC------------CCEEEEEcCCCcce---eeeccccCCeeEEEEccCCcEEEEe
Q 012996 80 ----AEPIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLL---KKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 80 ----~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
...+.+++|+|+|++|++++.+ +.|.+||+.+++.. ..+. +...+.+++|+|+++ ++++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~ 164 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVA 164 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEc
Confidence 2238899999999999998865 89999999886543 3333 334688999999999 5555
Q ss_pred eCCCcEEEeeCcchhhhhhhhcccccceecccCCc---------------------C---ceeEEEEeecCCe-------
Q 012996 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------------------L---RITDIVIGYGGVS------- 189 (451)
Q Consensus 141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~i~~i~~~~~~~~------- 189 (451)
+. .|.+||+.++.. ...+..+. . ...++++++++..
T Consensus 165 ~~--~i~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 231 (349)
T 1jmx_B 165 GP--DIYKMDVKTGKY-----------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 231 (349)
T ss_dssp SS--SEEEECTTTCCE-----------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE
T ss_pred cC--cEEEEeCCCCce-----------eccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc
Confidence 43 499999965321 11111110 0 2234455433210
Q ss_pred --eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECC-CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 190 --ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDP-AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 190 --~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
.++.....++.+.+|++. .....+..++++| ++++++++ ++.|++||+.+. +.+..+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~---------~~~~~~~ 292 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA--------DLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR---------KLIKAAN 292 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE--------ECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT---------EEEEEEE
T ss_pred ceeEEEEeccCCcEEecccc--------cCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC---------eEEEEEc
Confidence 111122333444444431 1455788999999 99999988 889999999875 3333443
Q ss_pred cCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecC
Q 012996 267 DHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLA 309 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 309 (451)
....+.+++|+| +++|++++.++.|.+||+.+++.+..+..+
T Consensus 293 -~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 293 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred -CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 234578999999 888888888999999999999999888765
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1.4e-20 Score=171.64 Aligned_cols=291 Identities=11% Similarity=0.143 Sum_probs=189.2
Q ss_pred CCCCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---CccEEEEECCC--Cceeee---ecCC
Q 012996 11 ADTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSK--PQVEVK---SLPA 80 (451)
Q Consensus 11 ~dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~--~~~~~~---~~~~ 80 (451)
.++.|.+|++ .+++....... +......++ |+|+|++|++++.+ ++.|.+|+++. +..... ..+.
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~--~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~ 99 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLI--PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMG 99 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEE--ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSS
T ss_pred CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEE--ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCC
Confidence 5678999976 45654332222 223344455 99999999888773 37999999865 333222 2244
Q ss_pred CCeeEEEECCCCcEEEEec-cCCCEEEEEcCCCcceeee------c--------cccCCeeEEEEccCCcEEEEee-CCC
Q 012996 81 EPIKPIAANSHGTYIAGGG-QSGDIYMWEVASGRLLKKW------H--------AHYRAVTCLVFSEDGSFLISGS-EDG 144 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~------~--------~~~~~v~~~~~~~~~~~l~s~~-~dg 144 (451)
..+..+++ ++++|++++ .++.|.+|++.....+..+ . .+...+.+++|+|+|+++++++ .++
T Consensus 100 ~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 177 (361)
T 3scy_A 100 ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTD 177 (361)
T ss_dssp SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTT
T ss_pred CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCC
Confidence 56777888 788776665 5789999999754333221 1 1123457899999999776555 478
Q ss_pred cEEEeeCcchhhhhhhhccc-ccc----eecccCCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcCCCcee--eeee
Q 012996 145 CVRIWSLLTVFEECESQRAS-HLY----LHSFTGHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLLKGRLL--RNIV 216 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~-~~~----~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~--~~~~ 216 (451)
.|.+|++........ .. ... ......+...+..++|+|++ +++++++ .++.|.+||+.+++.. ..+.
T Consensus 178 ~v~v~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~spdg--~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 178 QIHKFNINPNANADN---KEKFLTKGTPEAFKVAPGSGPRHLIFNSDG--KFAYLINEIGGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp EEEEEEECTTCCTTT---CCCCEEEEEEEEEECCTTCCEEEEEECTTS--SEEEEEETTTCEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCCccc---ccceeecccccceecCCCCCCeEEEEcCCC--CEEEEEcCCCCeEEEEEecCCceEEeEEEe
Confidence 999999854210000 00 000 11122334556889999998 6676666 6899999999877542 2222
Q ss_pred ----cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc-C
Q 012996 217 ----FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS-E 288 (451)
Q Consensus 217 ----~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~-~ 288 (451)
+......++|+|++++|+++..+ +.|.+|++..... ....+..+.. ...+.+++|+| +++|++++ .
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g-----~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNG-----TLTKVGYQLT-GIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTC-----CEEEEEEEEC-SSCCCEEEECTTSCEEEEEETT
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCC-----cEEEeeEecC-CCCCceEEECCCCCEEEEEECC
Confidence 12346799999999999877765 8999999963211 0133444444 56788999999 88888877 6
Q ss_pred CCcEEEE--eCCCCceEEEe-ecCCCCeeEEEEE
Q 012996 289 DGMVRVW--DPITHNIVRMF-RLAKGPVNNILVV 319 (451)
Q Consensus 289 dg~i~iw--d~~~~~~~~~~-~~~~~~v~~l~~s 319 (451)
++.|.+| |..+++..... ..+...+.|+.|.
T Consensus 327 ~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 327 TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7889995 55577765543 2345578888886
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=8.7e-23 Score=198.44 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=178.9
Q ss_pred CCCeeEEEECCCCcEEEEecc-CCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeC---CCcEEEeeCcch
Q 012996 80 AEPIKPIAANSHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTV 154 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~ 154 (451)
..+|.+++|+|||+.||.++. ||.+.||++..++... +..|. ..+..+.|+|| +.+++++. +....+|.+...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998877 9999999996665544 44444 68999999999 77777765 455677665320
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEE
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFY 234 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 234 (451)
. ..... .+..+. .+...+|++++.+..+++++.+ .+.+||+.+++......++. .+++|+|+|++++
T Consensus 99 ~--------~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 99 R--------PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp S--------TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS--CEEEEEEETTEEE
T ss_pred C--------CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC--ceEEECCCCCEEE
Confidence 0 01111 122121 2335688898864455555544 45599999887665555444 8899999999999
Q ss_pred EEeCC----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCC--cEEEEeCCCCceEEEee
Q 012996 235 AGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDG--MVRVWDPITHNIVRMFR 307 (451)
Q Consensus 235 ~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg--~i~iwd~~~~~~~~~~~ 307 (451)
.++.+ +.|++||+.++. ...+..|...+..++|+| |+.|+++..+| .|++||+.+++.. .+.
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~ 234 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE 234 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred EEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence 88777 789999988764 335677888999999999 99999888888 8999999999888 778
Q ss_pred cCCCCeeEEE--------EEecCceeeeccCCCCcccccc
Q 012996 308 LAKGPVNNIL--------VVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 308 ~~~~~v~~l~--------~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
.|...+..++ |+|||..+++++.|+.+++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 235 LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8888788778 9999988899999999999998
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.89 E-value=9.2e-22 Score=181.36 Aligned_cols=302 Identities=9% Similarity=-0.082 Sum_probs=203.5
Q ss_pred eEEEECccCceeeeeecCCCCCCce--EEecceEeeccCcccCCCCCCc--cEEEEECCCCceeeeec-CCCCeeEEEEC
Q 012996 15 IGCWDLESGAEQLRYKSCASPPHGL--ACVGQRFLASSQLREQPSASSG--SILYWSWSKPQVEVKSL-PAEPIKPIAAN 89 (451)
Q Consensus 15 i~vwd~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~~~~~d~g--~i~vw~~~~~~~~~~~~-~~~~v~~~~~~ 89 (451)
...+|..+|..+..+..+....... ...+ |+|+|++|+.++..+| .|.+||..+++...... +...+..+.|+
T Consensus 12 ~~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~--~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~s 89 (388)
T 3pe7_A 12 DTYQDASTGAQVTRLTPPDVTCHRNYFYQKC--FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLS 89 (388)
T ss_dssp EEEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEEC
T ss_pred eEEecCCCCcceEEecCCcccccchhhcCcc--CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEc
Confidence 3456777888887776544322111 1145 9999999998887436 48888988877654443 33445578899
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEE--EccCCcEEEEe----------------------eCCCc
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLV--FSEDGSFLISG----------------------SEDGC 145 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~s~----------------------~~dg~ 145 (451)
|||+.|+.++.++.|++||+.+++....+..+...+.... ++|++++++.. ..++.
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 9999999999889999999999987766666666554444 48899988742 24467
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCC------CcEEEEEcCCCceeeeeecc
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVFP 218 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~ 218 (451)
|.+||+.++ ....+..+...+..+.|+| ++ ..|+.++.+ ..|.++|+..+.......+.
T Consensus 170 l~~~d~~~g------------~~~~l~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 235 (388)
T 3pe7_A 170 LMRVDLKTG------------ESTVILQENQWLGHPIYRPYDD--STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA 235 (388)
T ss_dssp EEEEETTTC------------CEEEEEEESSCEEEEEEETTEE--EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC
T ss_pred EEEEECCCC------------ceEEeecCCccccccEECCCCC--CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC
Confidence 999998552 1233344566788999999 87 677666543 37888888665543333333
Q ss_pred --cceeEEEECCCCCEEEEEeC-CC----cEEEEEccCCCCCCCCCCceeeeeeccCCcc---eeEEEEec-CCEEEEE-
Q 012996 219 --SVIDAIALDPAEHVFYAGSR-DG----SIYIAALNAESPSTSSYGMHIIGSLSDHSKA---VTCLAYST-GDLLISG- 286 (451)
Q Consensus 219 --~~i~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~-~~~l~s~- 286 (451)
..+...+|+|+|+.|+..+. ++ .|++||+.++.. ..+..+.++... ...+.|+| |+.|+..
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 236 EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEEEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEEEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 35778899999997755433 22 399999988642 223333321111 12237899 7777653
Q ss_pred --------cCCCcEEEEeCCCCceEEEeecCCC-----------CeeEEEEEecCceeeecc-CCCCccccccC
Q 012996 287 --------SEDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (451)
Q Consensus 287 --------~~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~ 340 (451)
..+..|.+||+.+++. ..+..+.. .+.+++|+|||+.|+.++ .+|...+|.+.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp --------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 4566899999988765 45555555 578899999999887665 46777777654
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.9e-20 Score=170.72 Aligned_cols=271 Identities=8% Similarity=0.050 Sum_probs=180.3
Q ss_pred ccEEEEECC--CCceeee-ecCCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCC--Ccc--eeeeccccCCeeEEE
Q 012996 61 GSILYWSWS--KPQVEVK-SLPAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVAS--GRL--LKKWHAHYRAVTCLV 129 (451)
Q Consensus 61 g~i~vw~~~--~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~~v~~~~ 129 (451)
+.|.+|.++ ++..... ..+...+..++|+|+|++|++++.+ +.|.+|++.. ++. +.....+......++
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~ 106 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT 106 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE
T ss_pred CCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE
Confidence 789999764 4443322 1266788899999999999988875 7899998865 432 333444556677788
Q ss_pred EccCCcEEEEee-CCCcEEEeeCcchhhhhhhhc---ccccceecccCCcCceeEEEEeecCCeeEEEE-eeCCCcEEEE
Q 012996 130 FSEDGSFLISGS-EDGCVRIWSLLTVFEECESQR---ASHLYLHSFTGHTLRITDIVIGYGGVSATIVS-ASEDRTCKVW 204 (451)
Q Consensus 130 ~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s-~~~d~~i~iw 204 (451)
+ ++++|++++ .++.|.+|++........... ....-......+...+.+++|+|++ +++++ ...++.|.+|
T Consensus 107 ~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg--~~l~~~~~~~~~v~v~ 182 (361)
T 3scy_A 107 T--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG--KYLLADDLGTDQIHKF 182 (361)
T ss_dssp E--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS--SEEEEEETTTTEEEEE
T ss_pred E--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC--CEEEEEeCCCCEEEEE
Confidence 8 788777766 578999999964211000000 0000000011123346789999998 65554 4458899999
Q ss_pred EcCCCce--------------eeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 205 SLLKGRL--------------LRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 205 d~~~~~~--------------~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
++..... .........+..++|+|+++++++++ .++.|.+|++.++... ....+.....+.
T Consensus 183 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~----~~~~~~~~~~~~ 258 (361)
T 3scy_A 183 NINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD----EIQTVAADTVNA 258 (361)
T ss_dssp EECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE----EEEEEESCSSCC
T ss_pred EEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE----EeEEEecCCCCC
Confidence 9875431 11222456678999999999888877 6899999999854210 001122223344
Q ss_pred cceeEEEEec-CCEEEEEcC--CCcEEEEeCC--CCc--eEEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccC
Q 012996 270 KAVTCLAYST-GDLLISGSE--DGMVRVWDPI--THN--IVRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRH 340 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l~s~~~--dg~i~iwd~~--~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~ 340 (451)
..+..++|+| +++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+|+|++|++++ .++.+.+|++.
T Consensus 259 ~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 5678999999 888866655 4899999985 444 4445554 55788999999999888877 67889997654
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=200.01 Aligned_cols=276 Identities=11% Similarity=0.029 Sum_probs=189.5
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCC----CeeEEEECCCCcEEEEecc---------CCCEEEEEcCCC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE----PIKPIAANSHGTYIAGGGQ---------SGDIYMWEVASG 112 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~ 112 (451)
|+|+|++++++ .+ +.|++||..+++......+.. .+.+++|||||++|++++. ++.|++||+.++
T Consensus 23 ~s~dg~~~~~~-~d-~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g 100 (719)
T 1z68_A 23 WISGQEYLHQS-AD-NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG 100 (719)
T ss_dssp ESSSSEEEEEC-TT-SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred ECCCCeEEEEc-CC-CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence 99999766655 45 999999999888665543322 4899999999999998876 689999999988
Q ss_pred cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce---------eEEEE
Q 012996 113 RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI---------TDIVI 183 (451)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~i~~ 183 (451)
+.+.... ....+..++|+|||+.|+.+. ++.|++|++.++....... .......+.++...| .+++|
T Consensus 101 ~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 101 EFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp EECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred cccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEE
Confidence 7631111 125688999999999999886 7799999996532110000 000000112222222 58999
Q ss_pred eecCCeeEEEEeeCCC----------------------------------cEEEEEcCCCcee--eee-------ecccc
Q 012996 184 GYGGVSATIVSASEDR----------------------------------TCKVWSLLKGRLL--RNI-------VFPSV 220 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~----------------------------------~i~iwd~~~~~~~--~~~-------~~~~~ 220 (451)
+|++ +.|++++.|. .|++||+.+++.. ..+ .+...
T Consensus 177 SPDG--~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 177 SPNG--KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp CTTS--SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred CCCC--CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 9998 7888877552 7889999887653 111 14567
Q ss_pred eeEEEECCCCCEEEEEeCC----CcEEEEE----ccCCCCCCCCCCceeeeee----ccCCccee-----EEEEec-CCE
Q 012996 221 IDAIALDPAEHVFYAGSRD----GSIYIAA----LNAESPSTSSYGMHIIGSL----SDHSKAVT-----CLAYST-GDL 282 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~-~~~ 282 (451)
+..++|+|+++++++.... ..|++|| ..++. ....+ .+|...+. .+.|+| ++.
T Consensus 255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD---------CPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE---------CCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc---------eEEEEecccccCCceEccccCCccEECCCCCe
Confidence 8999999998877775433 2488888 55542 12222 35666676 889999 775
Q ss_pred EE--EEcCCC--cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCC-----CCccccccC
Q 012996 283 LI--SGSEDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFS-----NPHTSSRRH 340 (451)
Q Consensus 283 l~--s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d-----~~i~iw~~~ 340 (451)
|+ ++..+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +...+|.+.
T Consensus 326 l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 326 YYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp EEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 44 344555 57778887766 45666666678888888 88877666554 788999875
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=1.3e-21 Score=181.92 Aligned_cols=196 Identities=13% Similarity=0.078 Sum_probs=151.7
Q ss_pred ceEEecceEeeccCcccCCCCCCccEEEEECCCC-----------ce-----eeeecCCCCeeEEEECCCCcEEE----E
Q 012996 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKP-----------QV-----EVKSLPAEPIKPIAANSHGTYIA----G 97 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~-----------~~-----~~~~~~~~~v~~~~~~~~~~~l~----~ 97 (451)
.+..++ +++++.++++++.+ + +++|+.... .. .....+...|.+++|+|+|++|+ +
T Consensus 38 ~~n~la--vs~~~~~l~~~~~d-g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 38 RSSLLA--VSNKYGLVFAGGAS-G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CCBCEE--EETTTTEEEEEETT-E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CccEEE--EecCCCEEEEECCC-E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 456666 99999999998887 6 888874310 10 01223456799999999999999 7
Q ss_pred eccCCCEEEEEcCCC--------cc---eeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 98 GGQSGDIYMWEVASG--------RL---LKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 98 ~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|+.|+.|+|||+.++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||+++ .
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-----------~ 182 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-----------T 182 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-----------S
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-----------C
Confidence 889999999999765 22 3456779999999999997 88999999999999999965 2
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c-------ccceeEEEECCCCCEEEEE-
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F-------PSVIDAIALDPAEHVFYAG- 236 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~i~~~~~~~~~~~l~~~- 236 (451)
.......+|...|.+++|++++ .+|++|+.||.|++||++ ++....+. + ...+.+++|++++.++++.
T Consensus 183 ~~~~~~~~~~~~v~~v~wspdg--~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 183 VKVCATLPSTVAVTSVCWSPKG--KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp EEEEEEECGGGCEEEEEECTTS--SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cceeeccCCCCceeEEEEcCCC--CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 2334455688999999999998 899999999999999998 55554443 1 2378999999988877553
Q ss_pred eCCC------cEEEEEccCCC
Q 012996 237 SRDG------SIYIAALNAES 251 (451)
Q Consensus 237 ~~dg------~i~i~d~~~~~ 251 (451)
..+| .+++|+++...
T Consensus 260 ~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 260 AADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp ETTCCSSSCCEEEEEECCCTT
T ss_pred cCCCccCCCCceEEEEeccCC
Confidence 3443 38999998653
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.88 E-value=3.2e-20 Score=168.48 Aligned_cols=285 Identities=12% Similarity=0.076 Sum_probs=201.0
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec---
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL--- 78 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~--- 78 (451)
.|+.|.+||..+++.+.++..... . .++ |+|+|++++++.. .++.|.+||..+.+......
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~---p--~i~--~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~ 101 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFN---G--HVQ--VSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPP 101 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEE---E--EEE--ECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECT
T ss_pred ccCeEEEEECCCCeEEEEecCCCC---C--ceE--ECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCc
Confidence 478999999999999888765432 1 455 9999999988752 23789999998776653322
Q ss_pred ----CCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceee-eccccCCeeEEEEccCC-cEEEEeeCCCcEEEee
Q 012996 79 ----PAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWS 150 (451)
Q Consensus 79 ----~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd 150 (451)
+......++++|+|++|+++.. ++.|.+||+.+++.+.. +... ....+.+.|++ ..+++.+.||.+.+|+
T Consensus 102 ~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 102 KRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp TBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred cccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 1346789999999999998864 57899999999988877 5422 22335677765 6788888999999998
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeeec-----------
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIVF----------- 217 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~----------- 217 (451)
+........ .......+..+..++ .+.+.+++ ..++..+.++.+.++|+...... ..+..
T Consensus 180 ~~~~g~~~~----~~~~~~~~~~~~~~~-~~~~~~~g--~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 180 LGEDGKVAS----QSRSKQMFSVKDDPI-FIAPALDK--DKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp ECTTSSEEE----EEECCCCSCTTTSCB-CSCCEECS--SEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE
T ss_pred ECCCCcEee----eccccceEcCCCCce-EEEecccC--CEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc
Confidence 743110000 000001122222222 22335555 45566678899999998755321 22111
Q ss_pred ccceeEEEECCCCCEEEEEeC-----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEE
Q 012996 218 PSVIDAIALDPAEHVFYAGSR-----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s 285 (451)
+.....++++|+++.++++.. .+.|.+||+.+. +.+.++..+. +.+++|+| +++|++
T Consensus 253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~---------~~v~~i~~~~--p~~ia~spdg~~l~v 321 (361)
T 2oiz_A 253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK---------QRVARIPGRD--ALSMTIDQQRNLMLT 321 (361)
T ss_dssp ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT---------EEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC---------cEEEEEecCC--eeEEEECCCCCEEEE
Confidence 122223789999888887653 348999999886 5677777776 99999999 999998
Q ss_pred EcCCCcEEEEeCCCC--ceEEEeecCCCCeeEEEEEecCc
Q 012996 286 GSEDGMVRVWDPITH--NIVRMFRLAKGPVNNILVVRRPL 323 (451)
Q Consensus 286 ~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~l~~s~~~~ 323 (451)
++. +.|.+||..++ +.+.++..+......++++|+|.
T Consensus 322 ~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 322 LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 887 99999999999 99999866667788999999985
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=6.4e-20 Score=167.35 Aligned_cols=278 Identities=10% Similarity=0.035 Sum_probs=182.7
Q ss_pred CeEEEeecCCC-CCCeEEEEC--ccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC-CCceeee
Q 012996 1 MELLIASSSVA-DTGIGCWDL--ESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS-KPQVEVK 76 (451)
Q Consensus 1 ~e~~l~s~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~-~~~~~~~ 76 (451)
|-..|++|++. ++.|.+|++ .+|+....-.........+..++ |+|+|+++++++.+ .|.+|++. +++....
T Consensus 1 ~~~~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a--~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~ 76 (365)
T 1jof_A 1 PLHHLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMT--FDHERKNIYGAAMK--KWSSFAVKSPTEIVHE 76 (365)
T ss_dssp CEEEEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEE--ECTTSSEEEEEEBT--EEEEEEEEETTEEEEE
T ss_pred CcEEEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEE--ECCCCCEEEEEccc--eEEEEEECCCCCEEEe
Confidence 33445555523 357888765 45654321111011222345566 99999998887764 89999987 6654322
Q ss_pred ec--CCCCeeEEEECCCCcE--EEEec-------------cCCCEEEEEcC-CCcceeeec----cccCCeeEEEEccCC
Q 012996 77 SL--PAEPIKPIAANSHGTY--IAGGG-------------QSGDIYMWEVA-SGRLLKKWH----AHYRAVTCLVFSEDG 134 (451)
Q Consensus 77 ~~--~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~ 134 (451)
.. ..+.+.+++|+|+|++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|||
T Consensus 77 ~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 21 1234677999999994 55553 68899999997 466544443 245678999999999
Q ss_pred cEEEEeeC-CCcEEEeeCc-chhhhhhhhcccccceeccc--CCcCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC--
Q 012996 135 SFLISGSE-DGCVRIWSLL-TVFEECESQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL-- 207 (451)
Q Consensus 135 ~~l~s~~~-dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~-- 207 (451)
++|+++.. ++.|.+|++. ++ ....+..+. .|...+..++|+|++ +++++++ .++.|.+|++.
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g---------~~~~~~~~~~~~~g~~p~~~~~spdg--~~l~v~~~~~~~v~v~~~~~~ 225 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASG---------EVELVGSVDAPDPGDHPRWVAMHPTG--NYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTS---------CEEEEEEEECSSTTCCEEEEEECTTS--SEEEEEETTTTEEEEEEECTT
T ss_pred CEEEEEcCCCCEEEEEEECCCC---------CEEEeeeEecCCCCCCCCEeEECCCC--CEEEEEECCCCeEEEEEEeCC
Confidence 98887654 6799999985 31 111122222 245668899999998 6777666 47899999875
Q ss_pred CCcee---eeee-cc------c-------ceeEEE-ECCCCCEEEEEeCCC------cEEEEEccC-CCCCCCCCCceee
Q 012996 208 KGRLL---RNIV-FP------S-------VIDAIA-LDPAEHVFYAGSRDG------SIYIAALNA-ESPSTSSYGMHII 262 (451)
Q Consensus 208 ~~~~~---~~~~-~~------~-------~i~~~~-~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~~ 262 (451)
+++.. ..+. .+ . .+..++ |+|+|++|+++..+. .|.+|++.. +. ...+
T Consensus 226 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~-------~~~~ 298 (365)
T 1jof_A 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS-------IEKQ 298 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC-------EEEE
T ss_pred CCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC-------EEEe
Confidence 45542 1222 11 1 478999 999999998876433 899999963 22 1111
Q ss_pred e-eeccCCcceeEEEEec----CCEEEEEcCC-CcEEEEeCCCC
Q 012996 263 G-SLSDHSKAVTCLAYST----GDLLISGSED-GMVRVWDPITH 300 (451)
Q Consensus 263 ~-~~~~~~~~v~~~~~~~----~~~l~s~~~d-g~i~iwd~~~~ 300 (451)
. ....+...+..++|+| +++|++++.+ +.|.+|++...
T Consensus 299 ~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1 1333455677889998 8899998864 89999998765
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=4.7e-20 Score=168.23 Aligned_cols=268 Identities=11% Similarity=0.074 Sum_probs=181.1
Q ss_pred ccEEEEEC--CCCceeeee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC-CCcceeeeccc-cCCeeEEEEcc
Q 012996 61 GSILYWSW--SKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA-SGRLLKKWHAH-YRAVTCLVFSE 132 (451)
Q Consensus 61 g~i~vw~~--~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~~~~~~ 132 (451)
+.|.+|++ .++...... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 45777665 445443221 133478899999999999988887 89999997 77665433211 13466789999
Q ss_pred CCcE--EEEee-------------CCCcEEEeeCcchhhhhhhhcccccceeccc----CCcCceeEEEEeecCCeeEEE
Q 012996 133 DGSF--LISGS-------------EDGCVRIWSLLTVFEECESQRASHLYLHSFT----GHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 133 ~~~~--l~s~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~i~~~~~~~~~~l~ 193 (451)
+|++ ++++. .+|.+.+|++... ......+. .+...+.+++|+|++ ++++
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~spdG--~~l~ 160 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET----------GKLEKNVQNYEYQENTGIHGMVFDPTE--TYLY 160 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT----------CCEEEEEEEEECCTTCCEEEEEECTTS--SEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCC----------CcCcceEeeEEeCCCCcceEEEECCCC--CEEE
Confidence 9994 55553 6899999998531 11111111 245678899999998 6777
Q ss_pred Eee-CCCcEEEEEcC-CCcee--eeee---cccceeEEEECCCCCEEEEEeC-CCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 194 SAS-EDRTCKVWSLL-KGRLL--RNIV---FPSVIDAIALDPAEHVFYAGSR-DGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 194 s~~-~d~~i~iwd~~-~~~~~--~~~~---~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
+++ .++.|++||+. +++.. ..+. +...+..++|+|+|+++++++. ++.|.+|++......... ....+..+
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~-~~~~~~~~ 239 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY-THHSFPLI 239 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEESS
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE-ccceEEcC
Confidence 665 46899999998 67643 2333 2456899999999999988775 689999987642100000 00011122
Q ss_pred c----cCCc------ceeEEE-Eec-CCEEEEEcCCC------cEEEEeCC-CCceEE---EeecCCCCeeEEEEEe---
Q 012996 266 S----DHSK------AVTCLA-YST-GDLLISGSEDG------MVRVWDPI-THNIVR---MFRLAKGPVNNILVVR--- 320 (451)
Q Consensus 266 ~----~~~~------~v~~~~-~~~-~~~l~s~~~dg------~i~iwd~~-~~~~~~---~~~~~~~~v~~l~~s~--- 320 (451)
. +|.. .+..++ |+| +++|++++.+. .|.+|++. +++... .+..+...+..++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 1 2232 588999 999 88887765432 89999986 566543 2334555678899999
Q ss_pred cCceeeeccCC-CCccccccCCC
Q 012996 321 RPLYLNLGSFS-NPHTSSRRHGS 342 (451)
Q Consensus 321 ~~~~l~~~s~d-~~i~iw~~~~~ 342 (451)
||++|++++.+ +.|.+|++...
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999988764 89999998764
No 165
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.86 E-value=8.5e-19 Score=157.92 Aligned_cols=276 Identities=13% Similarity=0.069 Sum_probs=189.6
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 118 (451)
+.++. |++++..++..+.+ +.++.|. .........+...+.+++|+|+|++++++..++.|.+||..+++.....
T Consensus 8 ~~~~~--~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 8 LPTLF--YSGKSNSAVPIISE-SELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCBCC--SCGGGGCSSCCCCG-GGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cceee--ecCCccceeEEeec-ccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 45566 99999988888666 8999993 2222233345567899999999998888888899999999888765544
Q ss_pred ccccCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEE
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s 194 (451)
..+...+.+++++|+++++++...+ +.|.+||..+.. .........+...+.++++++++ .++++
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~i~~d~~g--~l~v~ 151 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN---------LQDIIEDLSTAYCIDDMVFDSKG--GFYFT 151 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS---------CEEEECSSSSCCCEEEEEECTTS--CEEEE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE---------EEEEEccCccCCcccceEECCCC--CEEEE
Confidence 4566789999999999988777666 689999985421 11011111244578899999887 66666
Q ss_pred eeC------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996 195 ASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (451)
Q Consensus 195 ~~~------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (451)
... .+.|..+|..+++..........+..++|+|+++.++++ +.++.|++||+.................+.+
T Consensus 152 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 152 DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp ECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred eccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 543 356777776655544333334457889999999866555 5578999999864211000000001111222
Q ss_pred CCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC------CeeEEEEEecCceeeeccCCC
Q 012996 268 HSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG------PVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 268 ~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~s~d~ 332 (451)
+ ..+..+++++ +.++++...++.|.+||. +++.+..+..+.. .+.+++|+|++..|+.++.++
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 4678899999 888887777899999998 5777777765433 689999999987776665554
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=3.3e-19 Score=177.85 Aligned_cols=311 Identities=13% Similarity=0.075 Sum_probs=197.1
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEE--ecceEeeccCcccCCCCCC--------ccEEEEECCCCce
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLAC--VGQRFLASSQLREQPSASS--------GSILYWSWSKPQV 73 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~l~~~~~d~--------g~i~vw~~~~~~~ 73 (451)
+|+++ ||+|++||+.+++....+..+......+.. .. |||||++++.++.+. +.+.+||+.+++.
T Consensus 30 ~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~ 104 (740)
T 4a5s_A 30 YLYKQ---ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS--ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL 104 (740)
T ss_dssp EEEEE---TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE--ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred EEEEc---CCcEEEEECCCCceEEEEechhhhhhcccccceE--ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcE
Confidence 45553 789999999999987777666543333332 55 899999998887641 4567999999887
Q ss_pred eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCe-----------------eEEEEccCCc
Q 012996 74 EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAV-----------------TCLVFSEDGS 135 (451)
Q Consensus 74 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~ 135 (451)
.....+...+...+|||||+.||.+ .++.|++|++.+++.... ..++...+ ..+.|||||+
T Consensus 105 ~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~ 183 (740)
T 4a5s_A 105 ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT 183 (740)
T ss_dssp CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS
T ss_pred EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC
Confidence 6555567789999999999999987 468999999988775442 22332222 3589999999
Q ss_pred EEEEeeCCC------------------------------------cEEEeeCcc---hhhhhhhhcccccceeccc----
Q 012996 136 FLISGSEDG------------------------------------CVRIWSLLT---VFEECESQRASHLYLHSFT---- 172 (451)
Q Consensus 136 ~l~s~~~dg------------------------------------~i~vwd~~~---~~~~~~~~~~~~~~~~~~~---- 172 (451)
.|+.++.|. .|.+||+.+ +. ......+.
T Consensus 184 ~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~---------~~~~~~l~~~~~ 254 (740)
T 4a5s_A 184 FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVT---------NATSIQITAPAS 254 (740)
T ss_dssp EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSS---------CCCEEEECCCHH
T ss_pred EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCC---------cceEEEecCCcc
Confidence 999876433 245555532 10 00111121
Q ss_pred --CCcCceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCCc----ee--eee---ecccce-----eEEEECCCCCE
Q 012996 173 --GHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKGR----LL--RNI---VFPSVI-----DAIALDPAEHV 232 (451)
Q Consensus 173 --~~~~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~----~~--~~~---~~~~~i-----~~~~~~~~~~~ 232 (451)
+|...+..++|+|++ +.++.... +..|.+||+.+++ +. ..+ .+...+ ....|+|+|+.
T Consensus 255 ~~~~~~~~~~~~wspdg--~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQE--RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHTSCEEEEEEEEEETT--EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred CCCCCeEEEEEEEeCCC--eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 377789999999998 65554432 3479999999887 22 111 133333 37889999998
Q ss_pred EE-EEe-CCC--cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCE-EEEEcC----CC--cEEEEeCCCCc
Q 012996 233 FY-AGS-RDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDL-LISGSE----DG--MVRVWDPITHN 301 (451)
Q Consensus 233 l~-~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~s~~~----dg--~i~iwd~~~~~ 301 (451)
++ ..+ .+| .|++||..++. ...+......|..+..-.++. ++++.. .+ .|...++..+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~----------~~~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~ 402 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD----------CTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT 402 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS----------CEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred EEEEEEcCCCceEEEEEECCCCc----------eEecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence 76 554 344 68888887653 223333445565554322444 444443 23 34445555444
Q ss_pred eEEEeec----CCCCeeEEEEEecCceeeeccCC---CCccccccCC
Q 012996 302 IVRMFRL----AKGPVNNILVVRRPLYLNLGSFS---NPHTSSRRHG 341 (451)
Q Consensus 302 ~~~~~~~----~~~~v~~l~~s~~~~~l~~~s~d---~~i~iw~~~~ 341 (451)
....+.. ....+....|||++++++..... ..+.+++..+
T Consensus 403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~ 449 (740)
T 4a5s_A 403 KVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVN 449 (740)
T ss_dssp EEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTT
T ss_pred cceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCC
Confidence 3323432 23568899999999987543322 2345555443
No 167
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.85 E-value=2.8e-18 Score=154.03 Aligned_cols=241 Identities=15% Similarity=0.140 Sum_probs=184.2
Q ss_pred CCCeeEEEECCCCcEEEEeccC------------------------CCEEEEEcCCCcceeeec-cccCCeeEEEEccCC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQS------------------------GDIYMWEVASGRLLKKWH-AHYRAVTCLVFSEDG 134 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~ 134 (451)
-..+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+...+..++++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999887776 479999998898876664 445678999999999
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc---------cCCcCceeEEEEee-cCCeeEEEEee-CCCcEEE
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF---------TGHTLRITDIVIGY-GGVSATIVSAS-EDRTCKV 203 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---------~~~~~~i~~i~~~~-~~~~~~l~s~~-~d~~i~i 203 (451)
+++++...++.|++||.... ...+..+ ..+.....++++++ ++ .++++.+ .++.|++
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~----------~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSK----------EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCNSRIVQ 170 (329)
T ss_dssp CEEEEETTTTEEEEECTTCS----------SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC--CEEEEECSSCCEEEE
T ss_pred CEEEEECCCCEEEEEeCCCC----------eEEEEEecccCCCCCCccccCCCcEEEEeCCCC--eEEEEeCCCCCeEEE
Confidence 98888888999999998431 0012222 23455688999998 66 6777775 6899999
Q ss_pred EEcCCCceeeeeecc-----------cceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee--ccCC
Q 012996 204 WSLLKGRLLRNIVFP-----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL--SDHS 269 (451)
Q Consensus 204 wd~~~~~~~~~~~~~-----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~ 269 (451)
|| .++..+..+... ..+..++++|+ +.++++...++.|++|+..++. .+..+ ..+.
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---------~~~~~~~~~~~ 240 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---------FVREIKHASFG 240 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEEECCTTTT
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------EEEEEeccccC
Confidence 99 567777766421 23789999998 6777777788899999998543 23333 3456
Q ss_pred cceeEEEEecCCEEEEEc-------CCCcEEEEeCCCCceEEEee---cCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 270 KAVTCLAYSTGDLLISGS-------EDGMVRVWDPITHNIVRMFR---LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 270 ~~v~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
..+.+++++|+..+++.+ .+..|++||..+++.+..+. .+......|+++|+|..+++...++.|++|+.
T Consensus 241 ~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 241 RNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred CCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence 678888888843333333 34589999999999999884 56677999999999988899899999999998
Q ss_pred CCC
Q 012996 340 HGS 342 (451)
Q Consensus 340 ~~~ 342 (451)
.+.
T Consensus 321 ~~~ 323 (329)
T 3fvz_A 321 TEK 323 (329)
T ss_dssp EEC
T ss_pred Ccc
Confidence 754
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=1e-19 Score=168.03 Aligned_cols=296 Identities=7% Similarity=-0.123 Sum_probs=192.9
Q ss_pred EEEECccCceeeeeecCCCC--CCceEEecceEeeccCcccCCCCCC--ccEEEEECCCCceeeeecCCCCe-eEEEECC
Q 012996 16 GCWDLESGAEQLRYKSCASP--PHGLACVGQRFLASSQLREQPSASS--GSILYWSWSKPQVEVKSLPAEPI-KPIAANS 90 (451)
Q Consensus 16 ~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~--g~i~vw~~~~~~~~~~~~~~~~v-~~~~~~~ 90 (451)
...|..++..+..+..+... ...+..++ |+|+|++++.+...+ ..|.+|+..+++......+...+ ..+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~--~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKC--FTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCC--BCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCc--CCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC
Confidence 34578888887776544222 11134455 999999988765432 47888898887765444333333 3488999
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-------------------EEEccCCcEEEEe-----eCCCcE
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-------------------LVFSEDGSFLISG-----SEDGCV 146 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~s~-----~~dg~i 146 (451)
||++|+.++.++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999888889999999888766555544432222 3456666665544 356688
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCC------CcEEEEEcCCCceeeeeec--
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASED------RTCKVWSLLKGRLLRNIVF-- 217 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~-- 217 (451)
.+||+.++ .. ..+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+..++......+
T Consensus 171 ~~~d~~~g-----------~~-~~~~~~~~~~~~~~~sp~dg--~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (396)
T 3c5m_A 171 IKVDIETG-----------EL-EVIHQDTAWLGHPIYRPFDD--STVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE 236 (396)
T ss_dssp EEEETTTC-----------CE-EEEEEESSCEEEEEEETTEE--EEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT
T ss_pred EEEECCCC-----------cE-EeeccCCcccccceECCCCC--CEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC
Confidence 99998542 11 12224566788899998 65 555554433 3688899876653333322
Q ss_pred ccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEc---
Q 012996 218 PSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGS--- 287 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~--- 287 (451)
...+..++|+|+++.|+.++.+ +.|++||+.++.. ..+....+ .. +.|+| +.++++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~ 304 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGSLMVGDGCDA 304 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence 2357889999999987776543 4499999987541 22222221 22 78887 66777654
Q ss_pred -------------CCCcEEEEeCCCCceEEEeecCCC-----------CeeEEEEEecCceeeeccC-CCCccccccC
Q 012996 288 -------------EDGMVRVWDPITHNIVRMFRLAKG-----------PVNNILVVRRPLYLNLGSF-SNPHTSSRRH 340 (451)
Q Consensus 288 -------------~dg~i~iwd~~~~~~~~~~~~~~~-----------~v~~l~~s~~~~~l~~~s~-d~~i~iw~~~ 340 (451)
.++.|.+||+.+++. ..+..+.. .+..+.|+|+|+.|+.++. ++...+|.+.
T Consensus 305 p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 305 PVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp ----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 347899999988765 34554444 2677899999998877664 5666666543
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.84 E-value=6.3e-19 Score=174.06 Aligned_cols=288 Identities=9% Similarity=-0.077 Sum_probs=187.3
Q ss_pred EEEeec--CCCCCCeEEEECccCceeeeeecCCCCCC-ce-----EEecceEe--eccCc-ccCCCCCCccEEEEECC--
Q 012996 3 LLIASS--SVADTGIGCWDLESGAEQLRYKSCASPPH-GL-----ACVGQRFL--ASSQL-REQPSASSGSILYWSWS-- 69 (451)
Q Consensus 3 ~~l~s~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v-----~~~~~~~~--~~~~~-l~~~~~d~g~i~vw~~~-- 69 (451)
.++++. + .++...||....+.....+..+..... .+ .... |+ |||+. |+.++..+..|.+|+..
T Consensus 36 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~SPDg~~~la~~~~~~~~l~~~~~~~~ 112 (662)
T 3azo_A 36 VWWVAPRPA-EAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWA--GVPRPAGGPLLVFTHFGDQRLYAFEPDAP 112 (662)
T ss_dssp EEEEEEETT-TTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEE--EECCSSSSCEEEEEBTTTCCEEEECTTST
T ss_pred EEEEecCcc-cCCcEEEEEECCCCCcceeCCCCccccccccccCCccce--eeeecCCCeEEEEEECCCCeEEEEcCCCC
Confidence 345555 5 688999999655555555544332211 00 0222 54 99999 77766544778888876
Q ss_pred C-Cceeeeec-----CCCCeeEEEECCCCcEEEEeccC----------CCEEEEEcCC------Ccceeeec-cccCCee
Q 012996 70 K-PQVEVKSL-----PAEPIKPIAANSHGTYIAGGGQS----------GDIYMWEVAS------GRLLKKWH-AHYRAVT 126 (451)
Q Consensus 70 ~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~-~~~~~v~ 126 (451)
+ +....... +...+..++|+|||+.|++++.+ ..|++||+.+ ++. ..+. .+...+.
T Consensus 113 g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 191 (662)
T 3azo_A 113 GGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT 191 (662)
T ss_dssp TCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC
T ss_pred CCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc
Confidence 3 44333333 45678899999999999988876 5799999987 544 4444 5567788
Q ss_pred EEEEccCCcEEEEeeCC--------CcEEEeeCc-chhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996 127 CLVFSEDGSFLISGSED--------GCVRIWSLL-TVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~ 197 (451)
.++|+|||++|+.++.+ ..|.+||+. ++. ..........|...+..+.|+|++ +++++++.
T Consensus 192 ~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~--------~~~~~~l~~~~~~~~~~~~~spdg--~l~~~~~~ 261 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR--------FADTRTLLGGPEEAIAQAEWAPDG--SLIVATDR 261 (662)
T ss_dssp CCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC--------EEEEEEEEEETTBCEEEEEECTTS--CEEEEECT
T ss_pred CceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc--------ccccEEeCCCCCceEcceEECCCC--eEEEEECC
Confidence 89999999999987755 379999985 210 002222334456788999999998 67888888
Q ss_pred CC--cEEEEEcCCCceeeeeecccc---------eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 198 DR--TCKVWSLLKGRLLRNIVFPSV---------IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 198 d~--~i~iwd~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
++ .|.+||+.+++......+... +..++|+|++.++++++. +.+++|.++... ..+..+.
T Consensus 262 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~--------~~~~~l~ 332 (662)
T 3azo_A 262 TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPES--------GELVDAA 332 (662)
T ss_dssp TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTT--------TEEEECC
T ss_pred CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCC--------CcEEEec
Confidence 88 666677666665443332221 467899999999999998 999999554321 1245566
Q ss_pred cCCcceeEE-EEecCCEE-EEEcCCC--cEEEEeCCCCceEEEeecCCCCe
Q 012996 267 DHSKAVTCL-AYSTGDLL-ISGSEDG--MVRVWDPITHNIVRMFRLAKGPV 313 (451)
Q Consensus 267 ~~~~~v~~~-~~~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v 313 (451)
.|...+..+ +++++.++ ++++.+. .|.+||+.+++.......+...+
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~ 383 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV 383 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence 677777777 55443333 3444444 46666777776554434443333
No 170
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.83 E-value=1.4e-17 Score=146.56 Aligned_cols=234 Identities=9% Similarity=0.181 Sum_probs=175.4
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec------cccCCeeEEEE-ccCCcEEEEeeC-CCcEEEeeC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVF-SEDGSFLISGSE-DGCVRIWSL 151 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~s~~~-dg~i~vwd~ 151 (451)
-..+.+++++++++++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|.+||.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 3568999999999988888888999999976 66665553 24467889999 467776666543 789999995
Q ss_pred cchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEEEC
Q 012996 152 LTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALD 227 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~ 227 (451)
.. ..+..+. .+...+.++++.+++ +++++...++.|.+||. .++.+..+. ....+..++++
T Consensus 108 ~g------------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 108 YG------------QFVRKFGATILQHPRGVTVDNKG--RIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp TS------------CEEEEECTTTCSCEEEEEECTTS--CEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEEC
T ss_pred CC------------cEEEEecCccCCCceEEEEeCCC--CEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEEC
Confidence 22 1222222 234567899998887 77777778899999996 466666554 23468899999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--CCcceeEEEEec-CCEEEEEcCCC-cEEEEeCCCCceE
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD--HSKAVTCLAYST-GDLLISGSEDG-MVRVWDPITHNIV 303 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~~l~s~~~dg-~i~iwd~~~~~~~ 303 (451)
|+++++++...++.|++||.... .+..+.. +...+..+++++ +.++++...++ .|.+||. +++.+
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~ 241 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLI 241 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEE
T ss_pred CCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEE
Confidence 99998887788999999997542 2333332 346789999999 88888887776 9999995 57777
Q ss_pred EEeecCCC--CeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 304 RMFRLAKG--PVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 304 ~~~~~~~~--~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
..+..+.. .+.+++++|+|+++++ +.|+.|++|+...
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 242 SALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 77776543 4779999999987777 5789999998754
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=2.7e-18 Score=155.79 Aligned_cols=257 Identities=10% Similarity=0.022 Sum_probs=179.5
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc----------CCCEEEEEcCCCcceeeeccc------cCC
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ----------SGDIYMWEVASGRLLKKWHAH------YRA 124 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~------~~~ 124 (451)
+.|.+||..+++........... .++|+|||+++++++. ++.|.+||..+++.+..+... ...
T Consensus 31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY 109 (361)
T ss_dssp CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence 79999999888765444333333 9999999999988762 567999999998888777532 345
Q ss_pred eeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEEEeecCCeeEEEEeeCCCcE
Q 012996 125 VTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIVIGYGGVSATIVSASEDRTC 201 (451)
Q Consensus 125 v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i 201 (451)
...++|+|||++|+++.. ++.|.+||+.+. ..+.. +.. . ....+.+.|.+. ..+++.+.||.+
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-----------~~~~~~i~~-~-~~~~v~~~p~~~-~~~~~~~~dg~~ 175 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-----------DYVEDVTAA-A-GCWSVIPQPNRP-RSFMTICGDGGL 175 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----------EEEEEEGGG-T-TEEEEEECTTSS-SEEEEEETTSSE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCC-----------cEEEEEecC-C-CcceeEEcCCCC-eeEEEECCCCcE
Confidence 678999999999998874 578999999652 23333 221 1 112245556553 577888899999
Q ss_pred EEEEcCC-Cceeee------eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc------C
Q 012996 202 KVWSLLK-GRLLRN------IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD------H 268 (451)
Q Consensus 202 ~iwd~~~-~~~~~~------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~------~ 268 (451)
.+|++.. ++.... +........+.++|++..++..+.++.++++|+..... .....+.- +
T Consensus 176 ~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~~ 248 (361)
T 2oiz_A 176 LTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDKA 248 (361)
T ss_dssp EEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHHH
T ss_pred EEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-------eecccccccCccccc
Confidence 9999865 554411 11111112233356677777778889999999875431 11111100 0
Q ss_pred ----CcceeEEEEec-CCEEEEEcC-----------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 269 ----SKAVTCLAYST-GDLLISGSE-----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 269 ----~~~v~~~~~~~-~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
......++++| ++.++++.. .+.|.+||+.+++.+.++..+. ..+++|+|||++|++++. +
T Consensus 249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence 01122378899 677666543 3479999999999999999876 999999999999998887 9
Q ss_pred CccccccCCC
Q 012996 333 PHTSSRRHGS 342 (451)
Q Consensus 333 ~i~iw~~~~~ 342 (451)
.|.+||..+.
T Consensus 326 ~v~v~D~~t~ 335 (361)
T 2oiz_A 326 NVNVYDISQP 335 (361)
T ss_dssp CEEEEECSSS
T ss_pred eEEEEECCCC
Confidence 9999998875
No 172
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.81 E-value=2.2e-17 Score=157.31 Aligned_cols=320 Identities=11% Similarity=0.048 Sum_probs=221.7
Q ss_pred EEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceeeeecCC
Q 012996 3 LLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEVKSLPA 80 (451)
Q Consensus 3 ~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~~~~~~ 80 (451)
.++++.. .++.|.++|..+++.+.++.... ....+. |+|+|+++++++.+ +.|.+||+. +.+........
T Consensus 168 ~~~V~~~-~~~~V~viD~~t~~v~~~i~~g~----~p~~v~--~SpDGr~lyv~~~d-g~V~viD~~~~t~~~v~~i~~G 239 (567)
T 1qks_A 168 LFSVTLR-DAGQIALIDGSTYEIKTVLDTGY----AVHISR--LSASGRYLFVIGRD-GKVNMIDLWMKEPTTVAEIKIG 239 (567)
T ss_dssp EEEEEET-TTTEEEEEETTTCCEEEEEECSS----CEEEEE--ECTTSCEEEEEETT-SEEEEEETTSSSCCEEEEEECC
T ss_pred eEEEEeC-CCCeEEEEECCCCeEEEEEeCCC----CccceE--ECCCCCEEEEEcCC-CeEEEEECCCCCCcEeEEEecC
Confidence 4667777 89999999999999998886432 344566 99999999988876 999999995 66665555455
Q ss_pred CCeeEEEEC----CCCcEEEEecc-CCCEEEEEcCCCcceeeecc----------ccC-CeeEEEEccCCcE-EEEeeCC
Q 012996 81 EPIKPIAAN----SHGTYIAGGGQ-SGDIYMWEVASGRLLKKWHA----------HYR-AVTCLVFSEDGSF-LISGSED 143 (451)
Q Consensus 81 ~~v~~~~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~-l~s~~~d 143 (451)
.....++|+ |||+++++++. ++.|.|+|..+.+.+..+.. |.. .+..+..++++.. ++....+
T Consensus 240 ~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 240 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 567899999 69999887765 58899999999988877642 112 5778888887554 4555667
Q ss_pred CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe-eCCCcEEEEEcCCCceeeeeec-c---
Q 012996 144 GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA-SEDRTCKVWSLLKGRLLRNIVF-P--- 218 (451)
Q Consensus 144 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~-~--- 218 (451)
|.|.++|..+. ....+..+ .......++.|++++ ++++++ ..++.|.++|+.+++....+.. .
T Consensus 320 g~v~~vd~~~~---------~~~~v~~i-~~~~~~~d~~~~pdg--r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P 387 (567)
T 1qks_A 320 GKILLVDYTDL---------NNLKTTEI-SAERFLHDGGLDGSH--RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP 387 (567)
T ss_dssp TEEEEEETTCS---------SEEEEEEE-ECCSSEEEEEECTTS--CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB
T ss_pred CeEEEEecCCC---------ccceeeee-eccccccCceECCCC--CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC
Confidence 99999998541 11111122 123345678898888 666554 4688999999999987766643 1
Q ss_pred cceeEEE-ECCCCCEEE-EEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC------
Q 012996 219 SVIDAIA-LDPAEHVFY-AGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE------ 288 (451)
Q Consensus 219 ~~i~~~~-~~~~~~~l~-~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~------ 288 (451)
.+-.... ++|++..++ ++. .++.|.++|...... ....++.+.++......-..+..+| ++++.+...
T Consensus 388 hpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~--~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~ 465 (567)
T 1qks_A 388 HPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH--PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAE 465 (567)
T ss_dssp CCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC--TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHH
T ss_pred CCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC--ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcc
Confidence 1111222 578755544 443 468999999987431 1222455666665444445577899 888888663
Q ss_pred -CCcEEEEeCCCC-----c-eEEEee--------cCCCCeeEEEEEecCceeeecc-----CCCCccccccCCCCC
Q 012996 289 -DGMVRVWDPITH-----N-IVRMFR--------LAKGPVNNILVVRRPLYLNLGS-----FSNPHTSSRRHGSQL 344 (451)
Q Consensus 289 -dg~i~iwd~~~~-----~-~~~~~~--------~~~~~v~~l~~s~~~~~l~~~s-----~d~~i~iw~~~~~~~ 344 (451)
.++|.++|+.+. . .+..+. .....+..+.|+|+|.++..+. .++.|.++|..+.++
T Consensus 466 ~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 466 ISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp HHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceE
Confidence 458999999876 2 123332 1234789999999999887653 378899988776544
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=3e-18 Score=171.02 Aligned_cols=280 Identities=10% Similarity=0.001 Sum_probs=177.6
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeee-ecCCC-----CeeEEEECCCCcEEEEeccC---------CCEEEEEcC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVK-SLPAE-----PIKPIAANSHGTYIAGGGQS---------GDIYMWEVA 110 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-~~~~~-----~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~ 110 (451)
|+|+|++++++ + |.|++||+.+++.... ..+.. ....++|||||++|+.++.+ +.+.+||+.
T Consensus 24 w~~dg~~~~~~--~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 24 WISDHEYLYKQ--E-NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp ECSSSEEEEEE--T-TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ECCCCcEEEEc--C-CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 99999998886 5 9999999998876433 22321 22348899999999998775 567899999
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCc---------CceeEE
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHT---------LRITDI 181 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~i 181 (451)
+++.. .+..|.+.+...+|||||+.|+.+. ++.|.+|++.++....... .......+.++. +...++
T Consensus 101 ~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 101 KRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp TTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcC--CCCccceecCcccccccchhcCCCcce
Confidence 98755 4566778899999999999998885 6799999986532110000 000000111222 122358
Q ss_pred EEeecCCeeEEEEeeCCC------------------------------------cEEEEEcCC---Cc--eeeeee----
Q 012996 182 VIGYGGVSATIVSASEDR------------------------------------TCKVWSLLK---GR--LLRNIV---- 216 (451)
Q Consensus 182 ~~~~~~~~~~l~s~~~d~------------------------------------~i~iwd~~~---~~--~~~~~~---- 216 (451)
.|+|++ +.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 177 ~wSpDg--~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 177 WWSPNG--TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp EECTTS--SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred EECCCC--CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 899998 7777764321 588899988 73 122222
Q ss_pred ---cccceeEEEECCCCCEEEEEeC----CCcEEEEEccCCCCCCCCCCceeeeee--ccCCccee-----EEEEec-CC
Q 012996 217 ---FPSVIDAIALDPAEHVFYAGSR----DGSIYIAALNAESPSTSSYGMHIIGSL--SDHSKAVT-----CLAYST-GD 281 (451)
Q Consensus 217 ---~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~~-~~ 281 (451)
+...+..++|+|+++.++.... +..|++||+.++..... ...+..+ .+|...|. ...|+| |+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~---~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN---CLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE---ECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc---eeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 4556889999999997665533 33799999988641000 0001111 34555554 788999 88
Q ss_pred EEE-EEc-CCC--cEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee-ccC----CCCcccccc
Q 012996 282 LLI-SGS-EDG--MVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL-GSF----SNPHTSSRR 339 (451)
Q Consensus 282 ~l~-s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~s~----d~~i~iw~~ 339 (451)
.|+ ..+ .+| .|.+||+.+++.. .+......|..+.+ +|++.|+. ++. .+...+|.+
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence 766 554 344 5888998876654 44444555666543 44655543 333 234455544
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=4.4e-18 Score=156.66 Aligned_cols=236 Identities=11% Similarity=0.016 Sum_probs=163.7
Q ss_pred EEECCCCcEEEEecc-CCC--EEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhc
Q 012996 86 IAANSHGTYIAGGGQ-SGD--IYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 86 ~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 162 (451)
.+|+|||++|+.++. +|. |.+||+.+++.......+...+..+.|+||++.|+.++.++.|.+||+.++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g-------- 112 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL-------- 112 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC--------
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC--------
Confidence 789999999988877 663 888999988877777777666667889999999999999999999999652
Q ss_pred ccccceecccCCcCceeEEEE--eecCCeeEEEEe----------------------eCCCcEEEEEcCCCceeeeeecc
Q 012996 163 ASHLYLHSFTGHTLRITDIVI--GYGGVSATIVSA----------------------SEDRTCKVWSLLKGRLLRNIVFP 218 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~--~~~~~~~~l~s~----------------------~~d~~i~iwd~~~~~~~~~~~~~ 218 (451)
........+...+....+ ++++ ..++.. ..+..|.+||+.+++......+.
T Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~~dg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~ 187 (388)
T 3pe7_A 113 ---EENVVYQVPAEWVGYGTWVANSDC--TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN 187 (388)
T ss_dssp ---CEEEEEECCTTEEEEEEEEECTTS--SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES
T ss_pred ---cceeeeechhhcccccceeECCCC--CeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC
Confidence 122223334444444444 4554 666532 24578999999998876666677
Q ss_pred cceeEEEECC-CCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccCC--cceeEEEEec-CCEEEEEcC
Q 012996 219 SVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHS--KAVTCLAYST-GDLLISGSE 288 (451)
Q Consensus 219 ~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~~l~s~~~ 288 (451)
..+..++|+| +++.|+....+ ..|+++|..... ...+..+. ..+....|+| |+.|+..+.
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~ 257 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN----------MRKVKTHAEGESCTHEFWVPDGSALVYVSY 257 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC----------CEESCCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc----------eEEeeeCCCCcccccceECCCCCEEEEEec
Confidence 7889999999 99988877653 378888876543 22233333 3577889999 887755443
Q ss_pred -CC----cEEEEeCCCCceEE--EeecCCC---CeeEEEEEecCceeeec---------cCCCCccccccCCCCC
Q 012996 289 -DG----MVRVWDPITHNIVR--MFRLAKG---PVNNILVVRRPLYLNLG---------SFSNPHTSSRRHGSQL 344 (451)
Q Consensus 289 -dg----~i~iwd~~~~~~~~--~~~~~~~---~v~~l~~s~~~~~l~~~---------s~d~~i~iw~~~~~~~ 344 (451)
++ .|.+||+.+++... .+..+.. ....+.|+|||+.|+.. ..+..|.+|+..++..
T Consensus 258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 22 39999999887433 3332100 12234799999999864 4456799999887543
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.80 E-value=5.9e-18 Score=167.13 Aligned_cols=282 Identities=12% Similarity=0.023 Sum_probs=183.0
Q ss_pred CCCceEEecceEeeccCcccCC--CCCCccEEEEECC-CCceeeeecCCCCee---------EEEEC--CCCcE-EEEec
Q 012996 35 PPHGLACVGQRFLASSQLREQP--SASSGSILYWSWS-KPQVEVKSLPAEPIK---------PIAAN--SHGTY-IAGGG 99 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~--~~d~g~i~vw~~~-~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~ 99 (451)
+...+..+. +++++-+++.. +.+ +...||... .+.......+...+. ...|+ |||+. |+.++
T Consensus 22 ~~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~ 98 (662)
T 3azo_A 22 RSGRPACVG--AVGDEVWWVAPRPAEA-GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH 98 (662)
T ss_dssp TCSCCEEEE--EETTEEEEEEEETTTT-TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred cCCccceeE--EcCCeEEEEecCcccC-CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence 345666777 88776666665 334 889999853 333333333444555 56565 99998 76654
Q ss_pred c-CCCEEEEEcC--CCcceeeecc-----ccCCeeEEEEccCCcEEEEeeCC----------CcEEEeeCcchhhhhhhh
Q 012996 100 Q-SGDIYMWEVA--SGRLLKKWHA-----HYRAVTCLVFSEDGSFLISGSED----------GCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 100 ~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~ 161 (451)
. +..|+++++. .......+.. |...+.+++|+|||+.|++++.+ ..|.+||+.+....
T Consensus 99 ~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---- 174 (662)
T 3azo_A 99 FGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA---- 174 (662)
T ss_dssp TTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT----
T ss_pred CCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc----
Confidence 3 5667777765 2033444544 66778999999999999988876 58999998541000
Q ss_pred cccccceeccc-CCcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEEcC-CC---ceeeeee-cccceeEEEEC
Q 012996 162 RASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASED--------RTCKVWSLL-KG---RLLRNIV-FPSVIDAIALD 227 (451)
Q Consensus 162 ~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd~~-~~---~~~~~~~-~~~~i~~~~~~ 227 (451)
.......+. .+...+..++|+|++ ++|+.++.+ ..|++||+. ++ +...... +...+..++|+
T Consensus 175 --~~~~~~~l~~~~~~~~~~~~~SpDG--~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 175 --DRSAVRELSDDAHRFVTGPRLSPDG--RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp --CGGGSEESSCSCSSEECCCEECTTS--SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred --cCCceeEEEecCCCcccCceECCCC--CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 001123334 556678889999998 788877654 379999998 56 3333333 35789999999
Q ss_pred CCCCEEEEEeCCC--cEEEEEccCCCCCCCCCCceeeeeeccCCcc--------eeEEEEec-CCEEEEEcCCCcEEEE-
Q 012996 228 PAEHVFYAGSRDG--SIYIAALNAESPSTSSYGMHIIGSLSDHSKA--------VTCLAYST-GDLLISGSEDGMVRVW- 295 (451)
Q Consensus 228 ~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~-~~~l~s~~~dg~i~iw- 295 (451)
|+|++++++..++ .|++||+.++. .......+... +..++|+| +.++++++. +.++||
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 9999888888888 56666654432 11111112111 56789998 889999988 999999
Q ss_pred -eCCCCceEEEeecCCCCeeEE-EEEecCceeeeccCCCCccccc
Q 012996 296 -DPITHNIVRMFRLAKGPVNNI-LVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 296 -d~~~~~~~~~~~~~~~~v~~l-~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
|..+++ +..+..|.+.+..+ +++++.-++++++.+....+|.
T Consensus 321 ~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 321 LDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVE 364 (662)
T ss_dssp EETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEE
Confidence 555554 67788887778776 4443333445555555444443
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=1e-16 Score=140.98 Aligned_cols=237 Identities=14% Similarity=0.167 Sum_probs=170.7
Q ss_pred CCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec------CCCCeeEEEE-CCCCcEEEEecc-CCCEEE
Q 012996 35 PPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL------PAEPIKPIAA-NSHGTYIAGGGQ-SGDIYM 106 (451)
Q Consensus 35 ~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~------~~~~v~~~~~-~~~~~~l~~~~~-dg~i~i 106 (451)
+......++ +++++.++++...+ +.|.+||.+......... +...+..+++ .++++++++... ++.|.+
T Consensus 28 ~~~~p~~v~--~~~~g~l~v~~~~~-~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVA--VNAQNDIIVADTNN-HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp CBSCEEEEE--ECTTCCEEEEEGGG-TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred ccCCCceEE--ECCCCCEEEEECCC-CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 345567777 89999877766665 899999987443322211 2246889999 577877777643 789999
Q ss_pred EEcCCCcceeeec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecc--cCCcCceeEEEE
Q 012996 107 WEVASGRLLKKWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF--TGHTLRITDIVI 183 (451)
Q Consensus 107 wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~i~~ 183 (451)
|| .+++.+..+. .+...+.+++++++++++++...++.|.+||... ..+..+ ..+...+.++++
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------------~~~~~~~~~~~~~~p~~i~~ 171 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------------NVLHKFGCSKHLEFPNGVVV 171 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS------------CEEEEEECTTTCSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC------------CEEEEeCCCCccCCcEEEEE
Confidence 99 6777776663 3446789999999999888877889999999632 112222 134456889999
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc---cceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCc
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP---SVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGM 259 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~ 259 (451)
++++ +++++...++.|++||. .++.+..+... ..+..++++|++.++++...++ .|.+||....
T Consensus 172 ~~~g--~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~--------- 239 (286)
T 1q7f_A 172 NDKQ--EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ--------- 239 (286)
T ss_dssp CSSS--EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---------
T ss_pred CCCC--CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---------
Confidence 9887 77777778999999997 45556555432 5688999999998888887776 9999996432
Q ss_pred eeeeeeccCC--cceeEEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996 260 HIIGSLSDHS--KAVTCLAYST-GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 260 ~~~~~~~~~~--~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
.+..+..+. ..+.+++++| +.++++ +.|+.|++|++....
T Consensus 240 -~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 240 -LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp -EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred -EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 233333332 3478999999 776666 679999999986543
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=3.1e-17 Score=148.55 Aligned_cols=251 Identities=7% Similarity=0.063 Sum_probs=170.8
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEE
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIA 87 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~ 87 (451)
++.|.+||+.+++.. .+ ..+.... |+|+|+.|+.++.++ ..|.+|++.+++......... +..++
T Consensus 42 ~~~l~~~d~~~~~~~-~l-------~~~~~~~--~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~ 110 (347)
T 2gop_A 42 ENTIVIENLKNNARR-FI-------ENATMPR--ISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLE 110 (347)
T ss_dssp EEEEEEEETTTCCEE-EE-------ESCEEEE--ECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEE
T ss_pred cceEEEEeCCCCceE-Ec-------ccCCCeE--ECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cccee
Confidence 567999999887653 33 3355666 999999998876532 348888888776554443334 99999
Q ss_pred ECCCCcEEEEeccC---------------------------CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996 88 ANSHGTYIAGGGQS---------------------------GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 88 ~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
|+|||+.|+.++.+ ..|++||+.+++.+..+.. . .+..+.|+||| +++++
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~ 187 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV 187 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE
Confidence 99999998887642 5699999988876455544 3 78899999999 77777
Q ss_pred eCCC-------cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC--------CcEEEEE
Q 012996 141 SEDG-------CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED--------RTCKVWS 205 (451)
Q Consensus 141 ~~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d--------~~i~iwd 205 (451)
..++ ...+|.+.++ . ...+..+ ..+..+ +|++ +.|+.++.+ ..|.+||
T Consensus 188 ~~~~~~~~~~~~~~l~~~d~~---------~---~~~l~~~-~~~~~~--spdg--~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 188 PHREIIPQYFKFWDIYIWEDG---------K---EEKMFEK-VSFYAV--DSDG--ERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp ECCCSSCCSSCCEEEEEEETT---------E---EEEEEEE-ESEEEE--EECS--SCEEEEECCSSSCCCSSCEEEEEC
T ss_pred ecccccccccccccEEEeCCC---------c---eEEeccC-cceeeE--CCCC--CEEEEEEccccCCccccceEEEEC
Confidence 6542 4456655321 1 1122223 344443 7887 667666543 3688888
Q ss_pred cCCCceeeeee-cccceeE-EEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEE
Q 012996 206 LLKGRLLRNIV-FPSVIDA-IALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLL 283 (451)
Q Consensus 206 ~~~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 283 (451)
+++...... +...+.. +.|+ ++ ++++++.++.+++| +.++ .. ..+..+...|.+++|+| .++
T Consensus 251 --~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g---------~~-~~~~~~~~~v~~~~~s~-~~~ 314 (347)
T 2gop_A 251 --GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG---------EI-KPIAKGRHWIMGFDVDE-IVV 314 (347)
T ss_dssp --SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS---------SE-EEEECSSSEEEEEEESS-SEE
T ss_pred --CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC---------ce-EEEecCCCeEEeeeeeC-cEE
Confidence 555443333 4567776 8999 88 88899999999999 8732 22 23334577899999999 888
Q ss_pred EEEcCCCcE-EEEeCCCCceEEEeecCCC
Q 012996 284 ISGSEDGMV-RVWDPITHNIVRMFRLAKG 311 (451)
Q Consensus 284 ~s~~~dg~i-~iwd~~~~~~~~~~~~~~~ 311 (451)
++++.++.. .+|.+. ++ ...+..|..
T Consensus 315 ~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 315 YLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 888877764 777765 54 445555544
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=1.7e-16 Score=142.20 Aligned_cols=279 Identities=8% Similarity=-0.032 Sum_probs=188.4
Q ss_pred CCCCeEEEECccCceeeeeec---CCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEE
Q 012996 11 ADTGIGCWDLESGAEQLRYKS---CASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIA 87 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~ 87 (451)
.+++|.+||..+++....+.. ..........+. +. .++..++.. .++.|.+||..+.+..........+..++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~~-~~~lyv~~~-~~~~v~viD~~t~~~~~~i~~~~~p~~i~ 90 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--IR-DGIGWIVVN-NSHVIFAIDINTFKEVGRITGFTSPRYIH 90 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--EE-TTEEEEEEG-GGTEEEEEETTTCCEEEEEECCSSEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--EE-CCEEEEEEc-CCCEEEEEECcccEEEEEcCCCCCCcEEE
Confidence 389999999999988765421 111112233343 42 333333333 34899999999888765555567889999
Q ss_pred ECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-----CCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhh
Q 012996 88 ANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-----RAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 88 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 161 (451)
++++++.+++...++.|.+||..+++....+.... .....+++ .++..+++.. .++.|.++|+.+.
T Consensus 91 ~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~------- 162 (328)
T 3dsm_A 91 FLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD------- 162 (328)
T ss_dssp EEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT-------
T ss_pred EeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC-------
Confidence 99998655554478999999999998877665333 14567777 4444444433 4889999999652
Q ss_pred cccccceecccCCcCceeEEEEeecCCeeEEEEeeCC----------CcEEEEEcCCCceeeeeec--ccceeEEEECCC
Q 012996 162 RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED----------RTCKVWSLLKGRLLRNIVF--PSVIDAIALDPA 229 (451)
Q Consensus 162 ~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~--~~~i~~~~~~~~ 229 (451)
.....+.. ......+++++++ ++++++..+ +.|.++|..+++....+.. ......++++|+
T Consensus 163 ----~~~~~i~~-g~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d 235 (328)
T 3dsm_A 163 ----KVVDELTI-GIQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT 235 (328)
T ss_dssp ----EEEEEEEC-SSCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT
T ss_pred ----eEEEEEEc-CCCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC
Confidence 22222222 2234567888877 666666554 7899999999988877764 346899999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEE----cCCCcEEEEeCCCCceE
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISG----SEDGMVRVWDPITHNIV 303 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~----~~dg~i~iwd~~~~~~~ 303 (451)
++.|+++.. .|.+||..+..... ...+..+......++++| +.++++. ..++.|.+||.. ++.+
T Consensus 236 ~~~lyv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 236 RDTLYWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp SCEEEEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred CCEEEEEcc--EEEEEECCCCceee-------eeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 999998765 89999998764211 011111246788999998 5555555 578999999988 9999
Q ss_pred EEeecCCCCeeEEEEE
Q 012996 304 RMFRLAKGPVNNILVV 319 (451)
Q Consensus 304 ~~~~~~~~~v~~l~~s 319 (451)
.++.... .-..++|-
T Consensus 306 ~~i~~G~-~P~~~~~~ 320 (328)
T 3dsm_A 306 DEFYVGI-IPGAFCWK 320 (328)
T ss_dssp EEEEEEE-SEEEEEEE
T ss_pred EEEEecc-CcceEEEe
Confidence 8887532 23445543
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.78 E-value=5.6e-17 Score=146.84 Aligned_cols=239 Identities=13% Similarity=0.107 Sum_probs=162.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---C--CEEEEEcCCCcceeeeccccCCeeEEEEccCCc
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G--DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS 135 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 135 (451)
+.|.+|++.++..... ..+..++|+|||++|+.++.+ + .|.+|++.+++.......+ . +..+.|+|||+
T Consensus 43 ~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~ 116 (347)
T 2gop_A 43 NTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSR 116 (347)
T ss_dssp EEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSS
T ss_pred ceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCC
Confidence 7899999988765433 568899999999999887654 2 3888898887765554433 3 89999999999
Q ss_pred EEEEeeCC---------------------------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 136 FLISGSED---------------------------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 136 ~l~s~~~d---------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
.|+.++.+ ..|.+||+.++ ..+..+.. . .+..+.|+|++
T Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-----------~~~~~l~~-~-~~~~~~~spdg- 182 (347)
T 2gop_A 117 KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-----------EVIEEFEK-P-RFSSGIWHRDK- 182 (347)
T ss_dssp EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-----------EEEEEEEE-E-TTCEEEEETTE-
T ss_pred EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-----------eEEeeecC-C-CcccccCCCCe-
Confidence 98887642 56888998542 11122222 2 67788898875
Q ss_pred eeEEEEeeCCC-------cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--------CcEEEEEccCCCCC
Q 012996 189 SATIVSASEDR-------TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--------GSIYIAALNAESPS 253 (451)
Q Consensus 189 ~~~l~s~~~d~-------~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~ 253 (451)
++++++.++ ...+|.+.+++......+ ..+.. ++|+|+.|+.++.+ ..|++|| ++
T Consensus 183 --~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~--- 252 (347)
T 2gop_A 183 --IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GK--- 252 (347)
T ss_dssp --EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SS---
T ss_pred --EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CC---
Confidence 666665442 334444435544332223 44444 38999988877654 3678887 32
Q ss_pred CCCCCceeeeeeccCCcceeE-EEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 254 TSSYGMHIIGSLSDHSKAVTC-LAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
.......+|...+.. +.|+ +.++++++.++.++|| +.+++.. .+..+.+.|.+++|+| .++++++.++
T Consensus 253 ------~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 253 ------EVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp ------CEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSS
T ss_pred ------ceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCC
Confidence 222334456677886 8888 4488889999999999 8766654 4444577899999999 5666666666
Q ss_pred Cc-cccccC
Q 012996 333 PH-TSSRRH 340 (451)
Q Consensus 333 ~i-~iw~~~ 340 (451)
.. .+|...
T Consensus 322 ~~~~l~~~~ 330 (347)
T 2gop_A 322 RLRELFTWD 330 (347)
T ss_dssp SCCEEEEES
T ss_pred ChHHheEeC
Confidence 54 777765
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=1.6e-16 Score=142.58 Aligned_cols=236 Identities=13% Similarity=0.136 Sum_probs=174.6
Q ss_pred CceEEecceEeeccCcccCCCCCC-----------------------ccEEEEECCCCceeeeec--CCCCeeEEEECCC
Q 012996 37 HGLACVGQRFLASSQLREQPSASS-----------------------GSILYWSWSKPQVEVKSL--PAEPIKPIAANSH 91 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~-----------------------g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~ 91 (451)
..+..++ ++|+|+++++...+. +.|.+||..++....... +...+..++++|+
T Consensus 24 ~~v~~va--~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVA--LDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEE--ECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEE--ECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 5567777 888888776655441 379999998777654433 2357899999999
Q ss_pred CcEEEEeccCCCEEEEEcCCCc-ceeee---------ccccCCeeEEEEcc-CCcEEEEee-CCCcEEEeeCcchhhhhh
Q 012996 92 GTYIAGGGQSGDIYMWEVASGR-LLKKW---------HAHYRAVTCLVFSE-DGSFLISGS-EDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~s~~-~dg~i~vwd~~~~~~~~~ 159 (451)
|+++++...++.|++||..... .+..+ ..+......++++| ++.++++.+ .++.|++|+...
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g------ 175 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG------ 175 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS------
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC------
Confidence 9988888888999999975432 45554 24455789999999 788888876 689999999532
Q ss_pred hhcccccceeccc----------CCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCceeeeee---cccceeEEE
Q 012996 160 SQRASHLYLHSFT----------GHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIA 225 (451)
Q Consensus 160 ~~~~~~~~~~~~~----------~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~ 225 (451)
..+..+. ++.....+++++++ + .++++...++.|++||..+++.+..+. +...+.+++
T Consensus 176 ------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g--~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 176 ------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD--QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp ------CEEEEECEECCSSSCCTTEESCEEEEEEETTTT--EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred ------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCC--EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 1222221 22334789999987 5 788888889999999998898888775 445788999
Q ss_pred ECCCCCEEEE-------EeCCCcEEEEEccCCCCCCCCCCceeeeee---ccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 226 LDPAEHVFYA-------GSRDGSIYIAALNAESPSTSSYGMHIIGSL---SDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 226 ~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
++| +..+.+ ...+..|++|+..++. .+..+ .++...+..|+++| +.++++...++.|++
T Consensus 248 ~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~---------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~ 317 (329)
T 3fvz_A 248 YIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE---------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWK 317 (329)
T ss_dssp EET-TEEEEEECCCCTTCSCCCCEEEEETTTCC---------EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEE
T ss_pred ecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe---------EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEE
Confidence 999 333333 2344589999988763 33343 35677899999999 888888888999999
Q ss_pred EeCC
Q 012996 295 WDPI 298 (451)
Q Consensus 295 wd~~ 298 (451)
|++.
T Consensus 318 ~~~~ 321 (329)
T 3fvz_A 318 FTLT 321 (329)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 9975
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.77 E-value=9.5e-17 Score=159.46 Aligned_cols=244 Identities=12% Similarity=0.071 Sum_probs=172.7
Q ss_pred CeeEEEECCCCcEEEEeccCC-----CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc-----------
Q 012996 82 PIKPIAANSHGTYIAGGGQSG-----DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC----------- 145 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~----------- 145 (451)
.+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 588999999999998765533 7999999999876543222 23678999999999999888766
Q ss_pred -----EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-----CCcEEEEEcCC------C
Q 012996 146 -----VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-----DRTCKVWSLLK------G 209 (451)
Q Consensus 146 -----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-----d~~i~iwd~~~------~ 209 (451)
|.+|++.+... ....+.....|...+.++.|++++ ++|+.++. +..|++||+.+ +
T Consensus 205 ~~~~~v~~~~l~t~~~-------~~~~v~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQS-------EDILCAEFPDEPKWMGGAELSDDG--RYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp CCCCEEEEEETTSCGG-------GCEEEECCTTCTTCEEEEEECTTS--CEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred CCCCEEEEEECCCCcc-------cceEEeccCCCCeEEEEEEEcCCC--CEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999965211 111233334456667889999998 67766554 56899999976 4
Q ss_pred c-eeeeee-cccceeEEEECCCCCEEEEEeCC----CcEEEEEccCCCCCCCCCCceeeeeeccCCc--ceeEEEEec-C
Q 012996 210 R-LLRNIV-FPSVIDAIALDPAEHVFYAGSRD----GSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVTCLAYST-G 280 (451)
Q Consensus 210 ~-~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~ 280 (451)
. ....+. +...+.. .|+|+|+.|+..+.. +.|.+||+.+... .....+..|.. .+..+.|++ +
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-------SKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------ccceeccCCCCCCeEEEEEEEcCC
Confidence 3 233443 3333433 588888888776653 3699999876531 01223444433 688899997 7
Q ss_pred CEEEEEcCCCc--EEEEeCCCCceEEEeecCCCCeeEEEEEecCceeee----ccCCCCccccccCCCC
Q 012996 281 DLLISGSEDGM--VRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNL----GSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 281 ~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~----~s~d~~i~iw~~~~~~ 343 (451)
.++++...|+. |.+||+.+++.+..+..+.+.+..+.++|++..++. ....+.+..|+..++.
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 78888888885 667787788888888888888999999999876652 2345678889887655
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.77 E-value=3.6e-16 Score=138.18 Aligned_cols=232 Identities=12% Similarity=0.005 Sum_probs=165.8
Q ss_pred CCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
......+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++|+++++...++.|.+||..++..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~- 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW- 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE-
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE-
Confidence 345678999999998 7788888999999998876 666667778899999999999887777778999999854211
Q ss_pred hhhhcccccceecccC-CcCceeEEEEeecCCeeEEEE----ee-------------CCCcEEEEEcCCCceeeeeeccc
Q 012996 158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----AS-------------EDRTCKVWSLLKGRLLRNIVFPS 219 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s----~~-------------~d~~i~iwd~~~~~~~~~~~~~~ 219 (451)
......... ....+.++++++++ +++++ ++ ..+.|..++.. ++.........
T Consensus 103 -------~~~~~~~~~~~~~~~~~i~~d~~G--~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (296)
T 3e5z_A 103 -------ESIADSFEGKKLNSPNDVCLAPDG--SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRV 172 (296)
T ss_dssp -------EEEECEETTEECCCCCCEEECTTS--CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCS
T ss_pred -------EEEeeccCCCCCCCCCCEEECCCC--CEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCC
Confidence 000011111 12346678898887 77776 33 13456666655 54433333556
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccC-CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
....++|+|+++.+++.+.++.|++|++.. +... .....+..+...+.++++++ |+++++. ++.|.+||.
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~------~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE------YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE------EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc------CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 678999999999997777889999999973 2100 00112233556678899999 8766665 888999997
Q ss_pred CCCceEEEeecCCCCeeEEEEE-ecCceeeeccCCCC
Q 012996 298 ITHNIVRMFRLAKGPVNNILVV-RRPLYLNLGSFSNP 333 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~s~d~~ 333 (451)
. ++.+..+..+.. +++++|. |+++.|++++.++.
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l 279 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEF 279 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEE
T ss_pred C-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeE
Confidence 6 888888888777 9999994 89988888877643
No 183
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.75 E-value=7.3e-15 Score=129.82 Aligned_cols=272 Identities=7% Similarity=-0.022 Sum_probs=189.3
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 114 (451)
..+.++. +.++|...++...+ +.|.+||.. +...... .....+.+++++++|.++++...++.|..||.. ++.
T Consensus 15 ~~~~~i~--~d~~g~l~v~~~~~-~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 15 TGPYGIT--VSDKGKVWITQHKA-NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCccceE--ECCCCCEEEEecCC-CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 4566777 88999877766555 899999988 5544332 235679999999999988887778889999975 432
Q ss_pred e-eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 115 L-KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 115 ~-~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
. ..+......+.++++.+++.++++...++.|.+||. ++ .. .......+...+.++++.+++ .+++
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---------~~-~~~~~~~~~~~~~~i~~~~~g--~l~v 156 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG---------KI-REYELPNKGSYPSFITLGSDN--ALWF 156 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC---------CE-EEEECSSTTCCEEEEEECTTS--CEEE
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC---------CE-EEecCCCCCCCCceEEEcCCC--CEEE
Confidence 2 112234567899999999988887777889999997 31 11 111122234567888888776 6777
Q ss_pred EeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 194 SASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
+...++.|..||. +++.... .. ....+..+++++++.++++...++.|..||. ++. ........+...
T Consensus 157 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--------~~~~~~~~~~~~ 226 (299)
T 2z2n_A 157 TENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--------ITEFKIPTPNAR 226 (299)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--------EEEEECSSTTCC
T ss_pred EeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--------EEEEECCCCCCC
Confidence 7667789999998 6655432 11 2346789999999987776667889999998 432 111123335567
Q ss_pred eeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEe--ecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 272 VTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMF--RLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 272 v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+.++++++ +.++++...++.|..||. +++ +..+ ..+...+.++++ +++.+.++.+ .+.+..++..
T Consensus 227 ~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 227 PHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp EEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred ceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 89999999 887777667889999998 454 3333 344567899999 8888777655 4555555544
No 184
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.75 E-value=5.6e-17 Score=160.62 Aligned_cols=278 Identities=10% Similarity=-0.021 Sum_probs=184.4
Q ss_pred EeeccCcccCCCCCCc--cEEEE--ECCCCceeeeec-------CCCCeeEEEECCCCcEEEE-----eccCCCEEEEEc
Q 012996 46 FLASSQLREQPSASSG--SILYW--SWSKPQVEVKSL-------PAEPIKPIAANSHGTYIAG-----GGQSGDIYMWEV 109 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g--~i~vw--~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~-----~~~dg~i~iwd~ 109 (451)
.+|+|++++....+.+ .-.+| +...+....... |...+..++|||||++||. |+.+..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 4577887776654422 33444 443443322221 2336889999999999983 444568999999
Q ss_pred CCCcceeeeccccCCe--eEEEEccCCcEEEEeeCCCc-------------EEEeeCcchhhhhhhhcccccceecccCC
Q 012996 110 ASGRLLKKWHAHYRAV--TCLVFSEDGSFLISGSEDGC-------------VRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 110 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~dg~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
.+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.+... ....+.....|
T Consensus 155 ~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~~lv~~~~~~ 225 (695)
T 2bkl_A 155 DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-------KDTVVHERTGD 225 (695)
T ss_dssp TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-------GCEEEECCCCC
T ss_pred CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-------hceEEEecCCC
Confidence 9988651 1122222 67999999999999988776 99999965311 11234444556
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCC----cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC----CCcEEEEE
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDR----TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR----DGSIYIAA 246 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d 246 (451)
...+.++.|++++ ++|+.++.++ .|.+|+..++.......+...+....+ +++. ++..+. ++.|.+||
T Consensus 226 ~~~~~~~~~SpDG--~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSRDG--KYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECTTS--CCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECCCC--CEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEe
Confidence 6788899999998 6777666555 677777666654444444555566666 6666 555443 57899999
Q ss_pred ccCCCCCCCCCCceeeeeeccC--CcceeEEEEecCCEEEEEcCCCcEEEEeCC-CCceEEEeecC-CCCeeEEEEEecC
Q 012996 247 LNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILVVRRP 322 (451)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~s~~~ 322 (451)
+.+... .....+..| ...+..++|+.+.++++...|+..+||.+. ++..+..+..+ .+.+..+.++|++
T Consensus 302 ~~~~~~-------~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 302 PAKPAR-------ASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDL 374 (695)
T ss_dssp TTBCSG-------GGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTC
T ss_pred CCCCCc-------cCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCC
Confidence 876531 001222222 456788888767788888889988888654 46666777665 6678889999999
Q ss_pred ceee----eccCCCCccccccCCCC
Q 012996 323 LYLN----LGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 323 ~~l~----~~s~d~~i~iw~~~~~~ 343 (451)
..++ +....+.+++|+..++.
T Consensus 375 ~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 375 DDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8776 44456789999987654
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.75 E-value=1.3e-15 Score=136.39 Aligned_cols=254 Identities=9% Similarity=0.006 Sum_probs=179.9
Q ss_pred ccEEEEECCCCceeeee-------cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC
Q 012996 61 GSILYWSWSKPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 133 (451)
+.|.+||..+++..... ........+.+. +++++++...++.|.+||..+++.+.++. .......++++++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~ 94 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSD 94 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEET
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCC
Confidence 89999999988765322 122446778774 45556666677899999999999988885 3467889999998
Q ss_pred CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC-----cCceeEEEEeecCCeeEEEEee-CCCcEEEEEcC
Q 012996 134 GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH-----TLRITDIVIGYGGVSATIVSAS-EDRTCKVWSLL 207 (451)
Q Consensus 134 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~i~~~~~~~~~~l~s~~-~d~~i~iwd~~ 207 (451)
++.+++...++.|.+||..+.. ....+... ......+++ .++ .++++.. .++.|.+||+.
T Consensus 95 g~lyv~~~~~~~v~~iD~~t~~-----------~~~~i~~g~~~~~~~~p~~i~~-~~~--~lyv~~~~~~~~v~viD~~ 160 (328)
T 3dsm_A 95 EKAYVTQIWDYRIFIINPKTYE-----------ITGYIECPDMDMESGSTEQMVQ-YGK--YVYVNCWSYQNRILKIDTE 160 (328)
T ss_dssp TEEEEEEBSCSEEEEEETTTTE-----------EEEEEECTTCCTTTCBCCCEEE-ETT--EEEEEECTTCCEEEEEETT
T ss_pred CeEEEEECCCCeEEEEECCCCe-----------EEEEEEcCCccccCCCcceEEE-ECC--EEEEEcCCCCCEEEEEECC
Confidence 8655554478999999996532 22222211 124456666 333 4444443 48899999999
Q ss_pred CCceeeeeecccceeEEEECCCCCEEEEEeCC----------CcEEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEE
Q 012996 208 KGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD----------GSIYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLA 276 (451)
Q Consensus 208 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 276 (451)
+++....+........++++|++++++++..+ +.|.++|..+. +....+... ......++
T Consensus 161 t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la 231 (328)
T 3dsm_A 161 TDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQ 231 (328)
T ss_dssp TTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEE
T ss_pred CCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEE
Confidence 99988888766677889999999977776554 78999998875 333333221 24689999
Q ss_pred Eec-CCEEEEEcCCCcEEEEeCCCCceEEE--eecCCCCeeEEEEEec-Cceeeec----cCCCCccccccCC
Q 012996 277 YST-GDLLISGSEDGMVRVWDPITHNIVRM--FRLAKGPVNNILVVRR-PLYLNLG----SFSNPHTSSRRHG 341 (451)
Q Consensus 277 ~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~l~~s~~-~~~l~~~----s~d~~i~iw~~~~ 341 (451)
++| ++.|+++.. .|.+||..+++.... +..+......++++|+ +..+++. ..++.|.+|+..+
T Consensus 232 ~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 232 LNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred EecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence 999 888888765 899999998876422 2222356889999994 5555555 5788999999874
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.75 E-value=5.6e-16 Score=134.93 Aligned_cols=239 Identities=9% Similarity=-0.047 Sum_probs=167.5
Q ss_pred CeeEEEECCCCcEEE-EeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHGTYIA-GGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~------ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN------ 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc------
Confidence 778999999999777 546788999999765543322233445678999999998666655 889999997441
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (451)
............+.++++.+++ .++++...++.|.+|+..+........ ....+..++++|+++++++...+
T Consensus 98 -----~~~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 98 -----NQTVLPFDGLNYPEGLAVDTQG--AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp -----CCEECCCCSCSSEEEEEECTTC--CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred -----eEeeeecCCcCCCcceEECCCC--CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCC
Confidence 1111111223567889998877 677777778899999866554332221 23467889999999877777778
Q ss_pred CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (451)
+.|.+||..... .......+...+.++++++ +.++++...++.|.+||............+...+.++++
T Consensus 171 ~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~ 241 (270)
T 1rwi_B 171 NRVVKLEAESNN---------QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAV 241 (270)
T ss_dssp TEEEEECTTTCC---------EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEE
T ss_pred CEEEEEecCCCc---------eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEE
Confidence 899999987653 1111222336788999999 877777778899999998765443322233457899999
Q ss_pred EecCceeeeccCCCCccccccCCCC
Q 012996 319 VRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 319 s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+++|+.+++...++.|.+++....+
T Consensus 242 ~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCCCCEEEEECCCCEEEEEcCCCcc
Confidence 9999988888899999999977544
No 187
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.74 E-value=2.5e-15 Score=143.13 Aligned_cols=268 Identities=13% Similarity=0.063 Sum_probs=191.3
Q ss_pred cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcC--CCcceeeeccccCCeeEEE
Q 012996 52 LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVA--SGRLLKKWHAHYRAVTCLV 129 (451)
Q Consensus 52 ~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~ 129 (451)
.++++..+++.|.++|..+++..........+..+.|+|||+++++++.++.|.+||+. +++.+..+.... ....++
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia 246 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIE 246 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeE
Confidence 34444444499999999999887666666678899999999999999999999999995 777777776533 457899
Q ss_pred Ec----cCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceeccc----------CCcC-ceeEEEEeecCCeeEEE
Q 012996 130 FS----EDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFT----------GHTL-RITDIVIGYGGVSATIV 193 (451)
Q Consensus 130 ~~----~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~i~~i~~~~~~~~~~l~ 193 (451)
|+ |||++++++.. ++.|.++|..+.. .+..+. .|.. .+..+..++++. .+++
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-----------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-~~vv 314 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-----------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP-EFIV 314 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCC-----------EEEEEECCEECTTTCCEESCCCEEEEEECSSSS-EEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCc-----------EEEEEeccccccccccccCCCceEEEEEcCCCC-EEEE
Confidence 99 69998887765 5899999986532 222211 1222 567788777653 6677
Q ss_pred EeeCCCcEEEEEcCCCcee--eeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeec----
Q 012996 194 SASEDRTCKVWSLLKGRLL--RNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLS---- 266 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---- 266 (451)
....+|.|.++|....+.+ ..+........+.|+|++++|+++. .++.|.++|+.+.+ .+..+.
T Consensus 315 ~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---------l~~~i~vgg~ 385 (567)
T 1qks_A 315 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIEDTGGQ 385 (567)
T ss_dssp EETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSSS
T ss_pred EecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---------EEEEEeccCc
Confidence 7778899999999876433 2333455677889999999988765 57899999998763 222221
Q ss_pred -cCCcceeEEEEec-CC-EEEEEc-CCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeeccC-----
Q 012996 267 -DHSKAVTCLAYST-GD-LLISGS-EDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSF----- 330 (451)
Q Consensus 267 -~~~~~v~~~~~~~-~~-~l~s~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~----- 330 (451)
.|.+.-..+ ++| +. +++++. .++.|.++|..+ .+.++++......-..+.++|++++|.+...
T Consensus 386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~ 464 (567)
T 1qks_A 386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 464 (567)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence 233222222 567 34 444443 468999999988 6788888865444355788999999877552
Q ss_pred --CCCccccccCCC
Q 012996 331 --SNPHTSSRRHGS 342 (451)
Q Consensus 331 --d~~i~iw~~~~~ 342 (451)
.+.|.++|+...
T Consensus 465 ~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 465 EISGSVAVFDIKAM 478 (567)
T ss_dssp HHHTCEEEEEGGGC
T ss_pred ccCceEEEEECCcc
Confidence 458999998764
No 188
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=4.9e-17 Score=149.98 Aligned_cols=236 Identities=8% Similarity=-0.061 Sum_probs=156.9
Q ss_pred eeEEEECCCCcEEEEeccC---CCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 83 IKPIAANSHGTYIAGGGQS---GDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+..++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|||+.|+.++.++.|.+||+.++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~---- 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE---- 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC----
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC----
Confidence 7788999999998776443 368889998877554433333333347899999999999999999999986521
Q ss_pred hhcccccceecccCCcCceeE-------------------EEEeecCCeeEEEEe-----eCCCcEEEEEcCCCceeeee
Q 012996 160 SQRASHLYLHSFTGHTLRITD-------------------IVIGYGGVSATIVSA-----SEDRTCKVWSLLKGRLLRNI 215 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~-------------------i~~~~~~~~~~l~s~-----~~d~~i~iwd~~~~~~~~~~ 215 (451)
.......+...... +.++|++ +.++.. ..+..|++||+.+++.....
T Consensus 114 -------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg--~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~ 184 (396)
T 3c5m_A 114 -------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT--SWEKFAEFYHTNPTCRLIKVDIETGELEVIH 184 (396)
T ss_dssp -------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC--SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE
T ss_pred -------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCC--cceeeeeeccCCCcceEEEEECCCCcEEeec
Confidence 11111112221111 1234444 333322 45678999999988876666
Q ss_pred ecccceeEEEECC-CCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccC--CcceeEEEEec-CCEEEE
Q 012996 216 VFPSVIDAIALDP-AEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDH--SKAVTCLAYST-GDLLIS 285 (451)
Q Consensus 216 ~~~~~i~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~~l~s 285 (451)
.....+..+.|+| ++..|+..+.+ ..|++||+.... ...+..+ ...+..+.|+| +++|+.
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------~~~l~~~~~~~~~~~~~~spdg~~l~~ 254 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----------VRKIKEHAEGESCTHEFWIPDGSAMAY 254 (396)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----------CEESSCCCTTEEEEEEEECTTSSCEEE
T ss_pred cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----------eeEeeccCCCccccceEECCCCCEEEE
Confidence 6777889999999 78877666543 368888886543 1122222 33578899999 887777
Q ss_pred EcCC-----CcEEEEeCCCCceEEEeecCCCCeeEEEEEe-cCceeeecc----------------CCCCccccccCCCC
Q 012996 286 GSED-----GMVRVWDPITHNIVRMFRLAKGPVNNILVVR-RPLYLNLGS----------------FSNPHTSSRRHGSQ 343 (451)
Q Consensus 286 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s----------------~d~~i~iw~~~~~~ 343 (451)
++.+ +.|.+||+.+++....... .+ .. +.|+| +|+++++++ .++.+.+|+..++.
T Consensus 255 ~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 255 VSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp EEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred EecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence 6543 4499999988875443322 12 33 89999 999888754 34678899987655
Q ss_pred C
Q 012996 344 L 344 (451)
Q Consensus 344 ~ 344 (451)
.
T Consensus 332 ~ 332 (396)
T 3c5m_A 332 A 332 (396)
T ss_dssp C
T ss_pred e
Confidence 3
No 189
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.73 E-value=1.5e-15 Score=150.83 Aligned_cols=246 Identities=9% Similarity=0.044 Sum_probs=166.5
Q ss_pred ceEEecceEeeccCcccCCCCCCc----cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC----------
Q 012996 38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------- 103 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g----~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------- 103 (451)
.+.... |||+|++||.+..++| .|++||+.+++..........+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~--~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 126 ALRGYA--FSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 466667 9999999997655423 899999998886543333334778999999999999887765
Q ss_pred ------EEEEEcCCCcce--e--eeccccCCeeEEEEccCCcEEEEeeC-----CCcEEEeeCcchhhhhhhhcccccce
Q 012996 104 ------IYMWEVASGRLL--K--KWHAHYRAVTCLVFSEDGSFLISGSE-----DGCVRIWSLLTVFEECESQRASHLYL 168 (451)
Q Consensus 104 ------i~iwd~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~ 168 (451)
|++|++.++... . ....|...+..+.|+|||++|+.++. +..|.+||+.+.... .......
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~----~~~~~~~ 279 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG----ITGILKW 279 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS----SCSSCCC
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc----cCCccce
Confidence 999999887632 2 22335566789999999999887765 568999998430000 0011123
Q ss_pred ecccCCcCceeEEEEeecCCeeEEEEeeC-C---CcEEEEEcCCCce--eeee-ecc--cceeEEEECCCCCEEEEEeCC
Q 012996 169 HSFTGHTLRITDIVIGYGGVSATIVSASE-D---RTCKVWSLLKGRL--LRNI-VFP--SVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 169 ~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d---~~i~iwd~~~~~~--~~~~-~~~--~~i~~~~~~~~~~~l~~~~~d 239 (451)
..+..+...+.. .|++++ ..|+..+. + +.|.+||+.++.. ...+ .+. ..+..++|++++.++++...+
T Consensus 280 ~~l~~~~~~~~~-~~s~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEG--TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEECSSSSCEE-EEEEET--TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeCCCCcEEE-EEeccC--CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 344455555544 477777 44444443 2 3699999987642 2233 332 368889998888888888888
Q ss_pred Cc--EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-c---CCCcEEEEeCCCCc
Q 012996 240 GS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-S---EDGMVRVWDPITHN 301 (451)
Q Consensus 240 g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~---~dg~i~iwd~~~~~ 301 (451)
+. |++|++.++ ..+..+..+...+..+.++| +..++.. + ..++|..||+.+++
T Consensus 357 g~~~l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 357 VKNTLQLHDLATG---------ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TEEEEEEEETTTC---------CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEECCCC---------CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 85 556666443 23445666677888999998 6655533 2 35789999998877
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.73 E-value=1.1e-15 Score=151.30 Aligned_cols=239 Identities=8% Similarity=-0.082 Sum_probs=162.1
Q ss_pred CceEEecceEeeccCccc-----CCCCCCccEEEEECCCCcee-eeecCCCCeeEEEECCCCcEEEEeccCCC-------
Q 012996 37 HGLACVGQRFLASSQLRE-----QPSASSGSILYWSWSKPQVE-VKSLPAEPIKPIAANSHGTYIAGGGQSGD------- 103 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~-----~~~~d~g~i~vw~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 103 (451)
..+.... |||||++|| .++.+ ..|++||+.+++.. ...........++|+|||+.|+.++.+..
T Consensus 121 ~~~~~~~--~SPDG~~la~~~~~~G~~~-~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 121 VSLGTWA--VSWDGKKVAFAQKPNAADE-AVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp EEEEEEE--ECTTSSEEEEEEEETTCSC-CEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred EEEEEEE--ECCCCCEEEEEECCCCCce-EEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 4566677 999999999 44444 79999999988764 22222222378999999999999888766
Q ss_pred ------EEEEEcCCCcc----eeeeccccCCeeEEEEccCCcEEEEeeCCC----cEEEeeCcchhhhhhhhccccccee
Q 012996 104 ------IYMWEVASGRL----LKKWHAHYRAVTCLVFSEDGSFLISGSEDG----CVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 104 ------i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
|++|++.++.. +.....|...+..+.|+|||++|+.++.++ .|.+|+..+ . ...
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-----------~-~~~ 265 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-----------K-DFR 265 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-----------S-SCE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-----------C-ceE
Confidence 99999988762 333344556788999999999998877665 566665422 1 123
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCce---eeeeec--ccceeEEEECCCCCEEEEEeCCCc
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRL---LRNIVF--PSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~---~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
.+..+...+....+ +++ .+++.+. .++.|.+||+.++.. ...+.+ ...+..++++ ++.++++...|+.
T Consensus 266 ~l~~~~~~~~~~~~-~~g--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKD--RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp EEEECSSCCEEEEE-ETT--EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred EeecCCCceEEEEe-cCC--cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 33445555555555 565 5444443 257899999987653 233332 4457888887 6778888889998
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccC-CcceeEEEEec-CCEEEEE----cCCCcEEEEeCCCCce
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDH-SKAVTCLAYST-GDLLISG----SEDGMVRVWDPITHNI 302 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~~l~s~----~~dg~i~iwd~~~~~~ 302 (451)
.++|.+.... .....+..+ ...+..+.++| +..++.. ...++|++||+.+++.
T Consensus 342 ~~l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 342 SEVRVATLKG--------KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTC--------CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEeCCC--------CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888665321 223334444 56778888888 7666632 3457899999988763
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.72 E-value=3.8e-15 Score=129.41 Aligned_cols=247 Identities=14% Similarity=0.061 Sum_probs=174.8
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCC--CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCe
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPA--EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAV 125 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v 125 (451)
.++.+++++.+ +.|.+||.++++........ ..+.++.++|+|+++++ .++.|..||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~-~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGW-NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTC-SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCC-CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 35677777777 99999999888887765543 37899999999998884 4677999998 899998887653 478
Q ss_pred eEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEE
Q 012996 126 TCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVW 204 (451)
Q Consensus 126 ~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iw 204 (451)
.++.+.++|+++++.+. ++.|..+|... ....... .......+......+++.+++ +++++...++.|..|
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~-----~~~~~~~~~~~~~~v~~~~~G--~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNMKG-EVLSKTE-----FETGIERPHAQFRQINKNKKG--NYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECTTS-CEEEEEE-----ECCSCSSGGGSCSCCEECTTS--CEEEEETTTTEEEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeCCC-CEEEEEe-----ccCCCCcccccccCceECCCC--CEEEEecCCCEEEEE
Confidence 88999999999999887 77777777521 1100000 000001122234445566666 899999999999999
Q ss_pred EcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC------CcceeEEEEe
Q 012996 205 SLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH------SKAVTCLAYS 278 (451)
Q Consensus 205 d~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~ 278 (451)
|.. |+.+..+..+..+.++...++++.+++++.++.|..+|..+++ .+..+..+ ...+..+...
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~---------~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNR---------IVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCC---------EEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCc---------EEEEecCCCCCCccccccccceEc
Confidence 987 9999998877777888999999999999988899999988764 23333221 2346778888
Q ss_pred c-CCEEEEEc--CC------CcEEEEeC-CCCceEEEeecCC--CCeeEEE
Q 012996 279 T-GDLLISGS--ED------GMVRVWDP-ITHNIVRMFRLAK--GPVNNIL 317 (451)
Q Consensus 279 ~-~~~l~s~~--~d------g~i~iwd~-~~~~~~~~~~~~~--~~v~~l~ 317 (451)
+ +.++++.. .. +..+++++ .+++.+-++..+. +.++.++
T Consensus 222 ~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 222 QNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp TTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred CCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 8 77777763 11 23345555 5778877776543 3455543
No 192
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=5.3e-15 Score=130.63 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=163.0
Q ss_pred ceEEecceEeeccC-cccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee
Q 012996 38 GLACVGQRFLASSQ-LREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK 116 (451)
Q Consensus 38 ~v~~~~~~~~~~~~-~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 116 (451)
....+. |+|+|+ +++++..+ +.|..|+..++ ......+...+.+++++|+|+++++...++.|.+||..+++...
T Consensus 29 ~~eg~~--~d~~g~~l~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~ 104 (296)
T 3e5z_A 29 WTEGPV--YVPARSAVIFSDVRQ-NRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWES 104 (296)
T ss_dssp SEEEEE--EEGGGTEEEEEEGGG-TEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEE
T ss_pred cccCCe--EeCCCCEEEEEeCCC-CEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEE
Confidence 345556 999998 55555555 89999999887 54445566789999999999988887777899999998887544
Q ss_pred eeccc----cCCeeEEEEccCCcEEEE----eeC-------------CCcEEEeeCcchhhhhhhhcccccceecccCCc
Q 012996 117 KWHAH----YRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (451)
Q Consensus 117 ~~~~~----~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (451)
..... ...+.+++++|+|+++++ |+. .+.|..++.. .....+..+.
T Consensus 105 ~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-------------g~~~~~~~~~ 171 (296)
T 3e5z_A 105 IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-------------GTLSAPIRDR 171 (296)
T ss_dssp EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-------------SCEEEEECCC
T ss_pred EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-------------CCEEEeecCC
Confidence 33221 235678999999998887 331 2345555542 1122334455
Q ss_pred CceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCce---eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGRL---LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~---~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
....+++|++++ +.+++.+.++.|.+|++. +++. ...+. ....+..++++++|+++++. ++.|.+||...
T Consensus 172 ~~~~gi~~s~dg--~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g- 246 (296)
T 3e5z_A 172 VKPNGLAFLPSG--NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDG- 246 (296)
T ss_dssp SSEEEEEECTTS--CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTS-
T ss_pred CCCccEEECCCC--CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCC-
Confidence 667899999988 667777888999999997 4544 22221 34456789999999866555 78999999863
Q ss_pred CCCCCCCCceeeeeeccCCcceeEEEEe-c-CCEEEEEcCCCcEEEEeCCCCce
Q 012996 251 SPSTSSYGMHIIGSLSDHSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPITHNI 302 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~ 302 (451)
..+..+..+.. +++++|. | ++.|++++.++ +.-++..+.+.
T Consensus 247 ---------~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 247 ---------DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ---------CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ---------CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 33555666666 9999995 6 77888887764 55556665543
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.71 E-value=4.2e-15 Score=129.38 Aligned_cols=239 Identities=8% Similarity=-0.008 Sum_probs=165.1
Q ss_pred ceEEecceEeeccCccc-CCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce
Q 012996 38 GLACVGQRFLASSQLRE-QPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL 115 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~-~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 115 (451)
....++ +.++|++.+ +...+ +.|.+|+..+....... .....+.+++++++|+++++.. ++.|.+||.......
T Consensus 25 ~p~~i~--~~~~g~l~v~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVA--VDSAGNVYVTSEGMY-GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEE--ECTTCCEEEEECSSS-CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceE--ECCCCCEEEEccCCC-CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence 455666 889998666 43444 89999997665543322 2335788999999999776655 889999997655433
Q ss_pred eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996 116 KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (451)
Q Consensus 116 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~ 195 (451)
.........+.+++++++++++++...++.|.+|+..+ .............+.++++++++ +++++.
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~p~~i~~~~~g--~l~v~~ 167 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-----------KTQTVLPFTGLNDPDGVAVDNSG--NVYVTD 167 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-----------CSCEECCCCSCCSCCCEEECTTC--CEEEEE
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-----------ceeEeeccccCCCceeEEEeCCC--CEEEEE
Confidence 22222336789999999999877777788999997633 11111112233456788898877 677777
Q ss_pred eCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE
Q 012996 196 SEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC 274 (451)
Q Consensus 196 ~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 274 (451)
..++.|.+||........... ....+..+++++++.++++...++.|.+|+...... ......+...+.+
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 168 TDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLA 238 (270)
T ss_dssp GGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEE
T ss_pred CCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCcee
Confidence 778899999987765443322 226688999999997777777788999999866421 1112223457899
Q ss_pred EEEec-CCEEEEEcCCCcEEEEeCCCCce
Q 012996 275 LAYST-GDLLISGSEDGMVRVWDPITHNI 302 (451)
Q Consensus 275 ~~~~~-~~~l~s~~~dg~i~iwd~~~~~~ 302 (451)
+++++ +.++++...++.|++++....+.
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 99999 88888889999999999876543
No 194
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=8.9e-15 Score=131.51 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=167.2
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEEC
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN 89 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~ 89 (451)
.++.++.| .++....+..+. ..+..++ |+++|++++++..+ +.|.+||..++...... .+...+.+++++
T Consensus 25 ~~~~~~~~---~~~~~~~~~~~~---~~~~~~~--~~~~g~l~~~~~~~-~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~ 95 (333)
T 2dg1_A 25 SESELQTI---TAEPWLEISKKG---LQLEGLN--FDRQGQLFLLDVFE-GNIFKINPETKEIKRPFVSHKANPAAIKIH 95 (333)
T ss_dssp CGGGSCEE---ECEEEEEEESSC---CCEEEEE--ECTTSCEEEEETTT-CEEEEECTTTCCEEEEEECSSSSEEEEEEC
T ss_pred ecccCccc---ccceeEEEeccC---ccccCcE--ECCCCCEEEEECCC-CEEEEEeCCCCcEEEEeeCCCCCcceEEEC
Confidence 57788888 355555555433 3445666 99999976666666 89999999887765433 456789999999
Q ss_pred CCCcEEEEeccC----CCEEEEEcCCCcceeeec--cccCCeeEEEEccCCcEEEEeeC------CCcEEEeeCcchhhh
Q 012996 90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKWH--AHYRAVTCLVFSEDGSFLISGSE------DGCVRIWSLLTVFEE 157 (451)
Q Consensus 90 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~ 157 (451)
|+|+++++...+ +.|.+||..++.....+. .+...+.+++++|+++++++... .+.|..++..+
T Consensus 96 ~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---- 171 (333)
T 2dg1_A 96 KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---- 171 (333)
T ss_dssp TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----
T ss_pred CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC----
Confidence 999988876665 689999988776543332 24467899999999987776653 24566666532
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEeeCCCcEEEEEcCC-Cceeeee------ecc--cceeEEEEC
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSASEDRTCKVWSLLK-GRLLRNI------VFP--SVIDAIALD 227 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~~d~~i~iwd~~~-~~~~~~~------~~~--~~i~~~~~~ 227 (451)
.. ...+..+...+.+++|++++ +.+ ++.+.++.|.+||+.+ +.....+ ... ..+..++++
T Consensus 172 -------~~-~~~~~~~~~~~~~i~~~~dg--~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d 241 (333)
T 2dg1_A 172 -------RT-VTPIIQNISVANGIALSTDE--KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID 241 (333)
T ss_dssp -------CC-EEEEEEEESSEEEEEECTTS--SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB
T ss_pred -------CE-EEEeecCCCcccceEECCCC--CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC
Confidence 11 11122223456788999887 544 5555678999999964 3332211 111 367889999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCC------cceeEEEEec-CCEEEEEcCCC
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHS------KAVTCLAYST-GDLLISGSEDG 290 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~-~~~l~s~~~dg 290 (451)
++++++++...++.|.+||.... .+..+..+. ..+.+++|+| +..|+.++.++
T Consensus 242 ~~G~l~v~~~~~~~v~~~d~~g~----------~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 242 SDDNLYVAMYGQGRVLVFNKRGY----------PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TTCCEEEEEETTTEEEEECTTSC----------EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCCEEEEEcCCCEEEEECCCCC----------EEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 99998887778899999998432 233333222 2689999998 77776666554
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.70 E-value=1.2e-14 Score=129.88 Aligned_cols=280 Identities=10% Similarity=0.017 Sum_probs=189.9
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-C--
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P-- 79 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~-- 79 (451)
++.|.+.|..+++.+.++.....+ . +. ++|+|+++.++.. .++.|.+||..+.+...... .
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P----~-va--~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g 130 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLP----N-PV--VADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA 130 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSC----E-EE--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC
T ss_pred CCEEEEEECCCCeEEEEEECCCCC----c-EE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc
Confidence 679999999999999999865543 2 45 9999999988762 23789999999988654432 1
Q ss_pred -----CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 80 -----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 80 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
......++|+|||+++.++.. ++.|.++|+.+++.+.++.... + ...+....+.+++.+.||.+.+.++.
T Consensus 131 ~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~ 207 (386)
T 3sjl_D 131 PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFG 207 (386)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred cccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECC
Confidence 235778999999999888764 6889999999999988885322 1 22333345667788889999999885
Q ss_pred chhhhhhhhcccccceecccCCcCcee-EEEEe-ecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeee-----------c
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRIT-DIVIG-YGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------F 217 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----------~ 217 (451)
+...... . .. ..+..-..++. ...|. +++ .+++ .+.+|.|++.|+.+.. ....+. .
T Consensus 208 ~~g~v~~-~-~~----~~~~~~~~~~~~~~~~~~~dG--~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 208 TEGTPEI-T-HT----EVFHPEDEFLINHPAYSQKAG--RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp SSSCCEE-E-EC----CCCSCTTSCBCSCCEEETTTT--EEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCCeEEE-e-ec----ceeccccccccccceeEcCCC--cEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence 4111000 0 00 01111111221 12443 344 4444 5558999999997654 333332 1
Q ss_pred ccceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEE
Q 012996 218 PSVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLIS 285 (451)
Q Consensus 218 ~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s 285 (451)
+.....++++|+++.+++... .+.|.++|+.+.+ .+..+.- ...+.+|++++ ++ +|++
T Consensus 279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k---------v~~~i~v-g~~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE---------RLAKFEM-GHEIDSINVSQDEKPLLYA 348 (386)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-EEEECEEEECSSSSCEEEE
T ss_pred CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe---------EEEEEEC-CCCcceEEECCCCCeEEEE
Confidence 334556888999999888753 2579999998874 3444332 24788999999 65 5655
Q ss_pred E-cCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 286 G-SEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 286 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+ ..++.|.++|..+++.++++... +.-..|.+++|
T Consensus 349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 4 56899999999999999999863 44556677766
No 196
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.69 E-value=6.3e-14 Score=124.76 Aligned_cols=245 Identities=9% Similarity=0.064 Sum_probs=168.2
Q ss_pred CCCeeEEEECCCCcEEEE-------eccCCCEEEEEcCCCcceeeec----cccCCeeEEEEccC-CcEEEEeeCCCcEE
Q 012996 80 AEPIKPIAANSHGTYIAG-------GGQSGDIYMWEVASGRLLKKWH----AHYRAVTCLVFSED-GSFLISGSEDGCVR 147 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~ 147 (451)
-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .+.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 345689999999988887 6778899999988776543222 25567899999998 76555444 44788
Q ss_pred EeeCcchhhhhhhhcccccc-eeccc-CCcCceeEEEEeecCCeeEEEEeeCC---------------CcEEEEEcCCCc
Q 012996 148 IWSLLTVFEECESQRASHLY-LHSFT-GHTLRITDIVIGYGGVSATIVSASED---------------RTCKVWSLLKGR 210 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~-~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~d---------------~~i~iwd~~~~~ 210 (451)
+||.. +... .. ..... .....+.++++.+++ +++++...+ +.|..||.. ++
T Consensus 96 ~~d~~-g~~~--------~~~~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~ 163 (314)
T 1pjx_A 96 VVQTD-GTFE--------EIAKKDSEGRRMQGCNDCAFDYEG--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ 163 (314)
T ss_dssp EEETT-SCEE--------ECCSBCTTSCBCBCCCEEEECTTS--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC
T ss_pred EEeCC-CCEE--------EEEeccCCCccccCCcCEEECCCC--CEEEEecCcccccccccccccCCCCeEEEECCC-CC
Confidence 99874 2100 00 00001 122457889998887 666666554 567778765 55
Q ss_pred eeeeeecccceeEEEEC----CCCCEEEEE-eCCCcEEEEEccC-CCCCCCCCCceeeeeeccCC-cceeEEEEec-CCE
Q 012996 211 LLRNIVFPSVIDAIALD----PAEHVFYAG-SRDGSIYIAALNA-ESPSTSSYGMHIIGSLSDHS-KAVTCLAYST-GDL 282 (451)
Q Consensus 211 ~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~~ 282 (451)
.............++++ |+++.++++ ..++.|.+||... +... .......+..+. ..+..+++++ +.+
T Consensus 164 ~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~----~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE----NKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE----EEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc----cceEEEECCCCCCCCCCceEECCCCCE
Confidence 44433344556889999 999776665 4678999999862 2100 001223334444 5678899999 888
Q ss_pred EEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCcee-eeccCCCCccccccCC
Q 012996 283 LISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYL-NLGSFSNPHTSSRRHG 341 (451)
Q Consensus 283 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l-~~~s~d~~i~iw~~~~ 341 (451)
+++...++.|.+||..+++.+..+..+...+.+++|+|+++.| ++...++.+..|+...
T Consensus 240 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8887788999999998888888887777889999999999855 5555667888887653
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.69 E-value=2.4e-15 Score=150.00 Aligned_cols=279 Identities=13% Similarity=0.007 Sum_probs=180.6
Q ss_pred EeeccCcccCCCCCCc--cEEEEEC--C---CCceeeee-------cCCCCeeEEEECCCCcEEEEeccC-----CCEEE
Q 012996 46 FLASSQLREQPSASSG--SILYWSW--S---KPQVEVKS-------LPAEPIKPIAANSHGTYIAGGGQS-----GDIYM 106 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g--~i~vw~~--~---~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 106 (451)
.+|+|++++....+.+ .-.+|.. . .+...... .+...+..++|||||++||.+..+ ..|++
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEE
Confidence 4588888876655433 3455543 3 33322211 122368899999999999877543 35999
Q ss_pred EEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc--------------EEEeeCcchhhhhhhhcccccceeccc
Q 012996 107 WEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------------VRIWSLLTVFEECESQRASHLYLHSFT 172 (451)
Q Consensus 107 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------------i~vwd~~~~~~~~~~~~~~~~~~~~~~ 172 (451)
||+.+++.+... .+...+..++|+|| +.|+.++.++. |.+|++.+... ....+....
T Consensus 194 ~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-------~~~lv~~~~ 264 (741)
T 1yr2_A 194 VGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-------ADQPVFATP 264 (741)
T ss_dssp EETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-------GCEEEECCT
T ss_pred EECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-------hCEEEeccC
Confidence 999999875432 12222457899999 88888877654 88898855211 112233333
Q ss_pred CCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCC--ceeeeee-cccceeEEEECCCCCEEEEEeCC----C
Q 012996 173 GHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRD----G 240 (451)
Q Consensus 173 ~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d----g 240 (451)
.+...+.++.|++++ ++|+..+.++ .|++||+.++ +....+. ......... +|+++.|+..+.+ +
T Consensus 265 ~~~~~~~~~~~SpDG--~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~ 341 (741)
T 1yr2_A 265 ELPKRGHGASVSSDG--RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLK 341 (741)
T ss_dssp TCTTCEEEEEECTTS--CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTC
T ss_pred CCCeEEEEEEECCCC--CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCC
Confidence 444567889999998 6777666443 8999999876 3133333 333444443 4889888887764 4
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC-CCceEEEeecC-CCCeeEEEE
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI-THNIVRMFRLA-KGPVNNILV 318 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~~v~~l~~ 318 (451)
.|++||+.+.. . .....+..+...+..+.++.+.++++...|+..+||.+. ++.....+..+ .+.+..+.+
T Consensus 342 ~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~ 414 (741)
T 1yr2_A 342 KIVRVDLSGST-P------RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSG 414 (741)
T ss_dssp EEEEEECSSSS-C------EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEEC
T ss_pred EEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeec
Confidence 59999987631 0 122233445556667777756678888889987777554 46667777653 677899999
Q ss_pred EecCceee----eccCCCCccccccCCCC
Q 012996 319 VRRPLYLN----LGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 319 s~~~~~l~----~~s~d~~i~iw~~~~~~ 343 (451)
+|++..|+ +....+.+..|+..++.
T Consensus 415 s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 415 RPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 99998776 44455789999876543
No 198
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.68 E-value=1.3e-13 Score=125.17 Aligned_cols=271 Identities=9% Similarity=-0.106 Sum_probs=181.2
Q ss_pred eeccCcccCCCC-CCc---cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCC
Q 012996 47 LASSQLREQPSA-SSG---SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASG 112 (451)
Q Consensus 47 ~~~~~~l~~~~~-d~g---~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~ 112 (451)
.|+++++.+... ..+ .|.+||..+++........... .++++|||++++++. .++.|.+||..+.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~ 107 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF 107 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence 356665555543 213 8899999988876544433333 999999999998875 3577999999988
Q ss_pred cceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceec-ccCCcCceeEEE
Q 012996 113 RLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHS-FTGHTLRITDIV 182 (451)
Q Consensus 113 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~i~ 182 (451)
+.+..+... ......+.|+|||++|+++.. ++.|.++| .++. .+.. +.. .. ++.
T Consensus 108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----------~~~~~i~~-~~---~~~ 171 (373)
T 2mad_H 108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----------SDDQLLSS-PT---CYH 171 (373)
T ss_pred cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------EEeEEcCC-Cc---eEE
Confidence 877766422 123458999999999998874 47899999 7631 2222 221 11 234
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee------cccc-eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV------FPSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS 255 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------~~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 255 (451)
+.+.+. ..+++.+.||.+.++|. +++...... ...+ .....+.+++..++..+..+.+.+.|+.....
T Consensus 172 ~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~--- 246 (373)
T 2mad_H 172 IHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA--- 246 (373)
T ss_pred EEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc---
Confidence 455554 46677888999999999 877663321 1111 12244566655555555788999999875431
Q ss_pred CCCceeeeeecc----------CCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCee
Q 012996 256 SYGMHIIGSLSD----------HSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPVN 314 (451)
Q Consensus 256 ~~~~~~~~~~~~----------~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (451)
..+..+.- .......+.++| ++.++++.. ++.|.++|..+++.+.++.. .....
T Consensus 247 ----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~ 321 (373)
T 2mad_H 247 ----TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVD 321 (373)
T ss_pred ----eEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcC
Confidence 11111110 112344477888 676666543 35799999999999999965 34689
Q ss_pred EEEEEecCc-eeeecc-CCCCccccccCCCCC
Q 012996 315 NILVVRRPL-YLNLGS-FSNPHTSSRRHGSQL 344 (451)
Q Consensus 315 ~l~~s~~~~-~l~~~s-~d~~i~iw~~~~~~~ 344 (451)
+++|+|||+ .++++. .++.+.++|..+.+.
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 999999999 677776 589999999887554
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.68 E-value=2.9e-14 Score=123.84 Aligned_cols=210 Identities=13% Similarity=0.107 Sum_probs=163.2
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeecccc-CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHY-RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH 169 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 169 (451)
.+++|++++.++.|.+||..+|+.+..+..+. ..+.++.++|+|+++++ .++.|..||. + ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~-----------G~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-D-----------GRELW 69 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-T-----------SCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-C-----------CCEEE
Confidence 46889999999999999999999999998776 57899999999998883 4678999997 3 22333
Q ss_pred cccCC-cCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCceeeeeecc-------cceeEEEECCCCCEEEEEeCCC
Q 012996 170 SFTGH-TLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLRNIVFP-------SVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 170 ~~~~~-~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-------~~i~~~~~~~~~~~l~~~~~dg 240 (451)
.+..+ ...+.++.+.+++ +++++.+. ++.|..+|. +++.+..+... .....+++.++++++++...++
T Consensus 70 ~~~~~~~~~~~~~~~~~dG--~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDG--NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEECCTTCEEEEEEECTTS--CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEcCCCCccccccEECCCC--CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 44433 3467788888887 78888877 788888885 78877776522 2345667899999999999999
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCC------CCe
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAK------GPV 313 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v 313 (451)
.|..||.. ++ .+..+..+ ..+.++...+ ++++++++.++.|..+|..+|+.+.++..+. ..+
T Consensus 147 ~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~ 215 (276)
T 3no2_A 147 EVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFV 215 (276)
T ss_dssp EEEEECTT-SC---------EEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEE
T ss_pred EEEEECCC-CC---------EEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccc
Confidence 99999987 53 34444433 3456677778 8999998888899999999999999987542 237
Q ss_pred eEEEEEecCceeeec
Q 012996 314 NNILVVRRPLYLNLG 328 (451)
Q Consensus 314 ~~l~~s~~~~~l~~~ 328 (451)
..++..++|..+++.
T Consensus 216 ~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 216 AQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred ccceEcCCCCEEEEe
Confidence 888889999888876
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.68 E-value=4.8e-13 Score=121.32 Aligned_cols=262 Identities=8% Similarity=-0.098 Sum_probs=175.3
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeecC-----
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSLP----- 79 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~~----- 79 (451)
+|.++|..+++.+.++.....+ . +. ++|+|+++.++.. .++.|.+||..+.+.......
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p--~---i~--~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~ 120 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP--N---PV--AAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR 120 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC--C---eE--ECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc
Confidence 8899999999998887654322 3 33 9999999988852 237899999987665433211
Q ss_pred ---CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceee-eccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeCc
Q 012996 80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 80 ---~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~ 152 (451)
......++|+|||++|+++.. ++.|.++| .+++.+.. +... + ++.+.|++ +.+++.+.||.+.++|.
T Consensus 121 ~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~- 194 (373)
T 2mad_H 121 FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH- 194 (373)
T ss_pred cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-
Confidence 134568999999999998864 47899999 99988877 5432 1 24455544 45667778999999998
Q ss_pred chhhhhhhhcccccceecccCCcCc-eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeee-----------cc
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLR-ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIV-----------FP 218 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~-i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~-----------~~ 218 (451)
++...... ... ..+ ....+ .....+.+++. .++++ +..+.+.+.|+.... .+..+. .+
T Consensus 195 ~g~~~~~~---~~~--~~~-~~~~p~~~~~~~~~~~~-~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p 266 (373)
T 2mad_H 195 AGGAAGAG---LVG--AML-TAAQNLLTQPAQANKSG-RIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRP 266 (373)
T ss_pred CCcEEEEE---ecc--ccc-cCCcceeecceeEecCC-EEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceec
Confidence 53221000 000 001 11111 12234555552 33333 367899999987542 222222 12
Q ss_pred cceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEE
Q 012996 219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG 286 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~ 286 (451)
.....+.++|+++.++++.. .+.|.++|..+. +.+.++. ......+++|+| ++ .++++
T Consensus 267 ~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~---------~vv~~i~-~g~~p~~i~~s~Dg~~~l~v~ 336 (373)
T 2mad_H 267 GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG---------QTSSQIS-LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred CceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC---------EEEEEEE-CCCCcCeEEECCCCCeEEEEE
Confidence 33455889999999888754 357999999876 4445553 234689999999 88 77777
Q ss_pred c-CCCcEEEEeCCCCceEEEe
Q 012996 287 S-EDGMVRVWDPITHNIVRMF 306 (451)
Q Consensus 287 ~-~dg~i~iwd~~~~~~~~~~ 306 (451)
. .++.|.+||+.+++.+.++
T Consensus 337 ~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 337 SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cCCCCeEEEEECCCCCEEeee
Confidence 7 5899999999999999884
No 201
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.67 E-value=4.1e-13 Score=118.58 Aligned_cols=263 Identities=7% Similarity=-0.002 Sum_probs=182.2
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL 114 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 114 (451)
.....+. +.++|...++...+ +.|.+|+.. +....... ....+.++++.+++++.++...++.|..||.. ++.
T Consensus 20 ~~p~~i~--~d~~g~l~v~~~~~-~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 20 SGPYGIT--SSEDGKVWFTQHKA-NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp CCEEEEE--ECTTSCEEEEETTT-TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCcceee--ECCCCCEEEEcCCC-CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4556666 88888877766555 899999988 55443222 23678999999999988877767889999977 554
Q ss_pred ee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEE
Q 012996 115 LK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIV 193 (451)
Q Consensus 115 ~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~ 193 (451)
.. ........+.++++.++++++++...++.|..||... ......+......+.++++.+++ ++++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-----------~~~~~~~~~~~~~~~~i~~d~~g--~l~v 161 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADG-----------TIYEYDLPNKGSYPAFITLGSDN--ALWF 161 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTS-----------CEEEEECSSTTCCEEEEEECTTS--SEEE
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCCC-----------CEEEccCCCCCCCceeEEECCCC--CEEE
Confidence 32 2222346789999999998888777688899998741 11111122234567888888877 6666
Q ss_pred EeeCCCcEEEEEcCCCceeeeee---cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 194 SASEDRTCKVWSLLKGRLLRNIV---FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 194 s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
+...++.|..||. +++... +. ....+..+++++++.++++....+.|..|+.. +. ........+..
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~ 230 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GE--------ISEYDIPTPNA 230 (300)
T ss_dssp EETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CC--------EEEEECSSTTC
T ss_pred EecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-Cc--------EEEEECCCCCC
Confidence 6666788999998 555443 32 23468899999999877766667789999983 22 11112233456
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-EeecCCCCeeEEEEEecCceeeecc
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR-MFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
.+.++++++ +.+.++...++.|..||. +++... .+......+.+++++++|...++..
T Consensus 231 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 231 RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc
Confidence 788999999 887777767789999998 454332 2333345789999999998666654
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=5.1e-13 Score=117.90 Aligned_cols=236 Identities=9% Similarity=0.018 Sum_probs=169.3
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
...+.+++++++|+++++...++.|.+||.. +..... ...+...+.++++++++.++++...++.|..||...
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----- 87 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG----- 87 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-----
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-----
Confidence 3578999999999988876667899999987 544322 223456789999999999888777788899999732
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~ 236 (451)
......+......+.++++.+++ .++++...++.|..||. +++...... ....+..+++++++.++++.
T Consensus 88 ------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 88 ------IIKEYTLPNPDSAPYGITEGPNG--DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp ------CEEEEECSSTTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred ------cEEEEeCCCcCCCceeeEECCCC--CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence 11111122244567888888776 67777777889999998 554432221 23568899999999887777
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE-eecCCCCee
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN 314 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~ 314 (451)
..++.|..||. ++. ........+...+.++++++ +.++++...++.|.+||. +++.... ...+...+.
T Consensus 159 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 228 (299)
T 2z2n_A 159 NQNNAIGRITE-SGD--------ITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPH 228 (299)
T ss_dssp TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCCCEEEEEcC-CCc--------EEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCce
Confidence 77789999998 432 11111233455688999999 887777777889999998 6664332 233456789
Q ss_pred EEEEEecCceeeeccCCCCccccccC
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+++++++|..+++...++.+..|+..
T Consensus 229 ~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 229 AITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEECSTTCEEEEETTTTEEEEEETT
T ss_pred eEEECCCCCEEEeccCCceEEEECCC
Confidence 99999999877776677888888874
No 203
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.63 E-value=4.6e-14 Score=126.17 Aligned_cols=274 Identities=10% Similarity=0.008 Sum_probs=183.6
Q ss_pred EeeccCcccCCCCC----CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCC
Q 012996 46 FLASSQLREQPSAS----SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVAS 111 (451)
Q Consensus 46 ~~~~~~~l~~~~~d----~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~ 111 (451)
..|+++.+.++... ++.|.+.|..+.+............ ++++|||+++++++ .++.|.+||..+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t 118 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT 118 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 45777777666542 3899999999988765544333334 99999999887765 356899999999
Q ss_pred Ccceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 112 GRLLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 112 ~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
++.+..+... ......+.|+|||++++++.. ++.|.++|+.+ ...+..+.... . ...
T Consensus 119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t-----------~~vv~tI~v~g--~-~~~ 184 (386)
T 3sjl_D 119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG-----------KAFKRMLDVPD--C-YHI 184 (386)
T ss_dssp CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT-----------TEEEEEEECCS--E-EEE
T ss_pred CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC-----------CcEEEEEECCC--c-cee
Confidence 9988877432 124567999999999988864 68999999965 33334332211 1 122
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeee-c----ccce-eEEEE-CCCCCEEEEEeCCCcEEEEEccCCCCCC
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIV-F----PSVI-DAIAL-DPAEHVFYAGSRDGSIYIAALNAESPST 254 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~-~----~~~i-~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 254 (451)
+ |.+. ..+++.+.||.+.+.++.+ ++...... . ...+ ....| .++|++++ .+.+|.+++.|+.+...
T Consensus 185 ~-P~g~-~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~-- 259 (386)
T 3sjl_D 185 F-PTAP-DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA-- 259 (386)
T ss_dssp E-EEET-TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC--
T ss_pred e-cCCC-ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc--
Confidence 2 3332 5677888899999999976 55432111 1 1112 12355 36776665 45589999999976542
Q ss_pred CCCCceeeeeec---------c-CCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCe
Q 012996 255 SSYGMHIIGSLS---------D-HSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPV 313 (451)
Q Consensus 255 ~~~~~~~~~~~~---------~-~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v 313 (451)
.....+. + .......+++++ ++.++.... .+.|.+.|+.+++.++++... .++
T Consensus 260 -----~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~ 333 (386)
T 3sjl_D 260 -----KFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI 333 (386)
T ss_dssp -----EECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred -----eeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCc
Confidence 1111111 0 122334577788 666666532 257999999999999998863 478
Q ss_pred eEEEEEecCc-eeee-ccCCCCccccccCCCCCC
Q 012996 314 NNILVVRRPL-YLNL-GSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 314 ~~l~~s~~~~-~l~~-~s~d~~i~iw~~~~~~~~ 345 (451)
..|++++|++ +|++ ...++.+.++|..+.+..
T Consensus 334 ~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 334 DSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp CEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred ceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 8999999997 5555 456899999998876543
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.61 E-value=1.3e-12 Score=115.13 Aligned_cols=231 Identities=10% Similarity=0.101 Sum_probs=155.0
Q ss_pred CCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 81 EPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 81 ~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
.-..+..|+|+ +.++++...++.|+.||..++.. ..+ .....+.+++++++++++++ . ++.|.+||..++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~---- 84 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS---- 84 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE----
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc----
Confidence 34568889985 55666767788999999887764 233 24567999999999995554 4 5679999985421
Q ss_pred hhcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeCC---------CcEEEEEcCC-CceeeeeecccceeEEEEC
Q 012996 160 SQRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASED---------RTCKVWSLLK-GRLLRNIVFPSVIDAIALD 227 (451)
Q Consensus 160 ~~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~d---------~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~ 227 (451)
...+.... .....+.++++++++ +++++.... ..-.+|.+.. ++...........+.++|+
T Consensus 85 -----~~~~~~~~~~~~~~~~~di~~d~dG--~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s 157 (297)
T 3g4e_A 85 -----AVVLATVDNDKKNNRFNDGKVDPAG--RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS 157 (297)
T ss_dssp -----EEEEEECCTTCSSEEEEEEEECTTS--CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC
T ss_pred -----EEEEEecCCCCCCCCCCCEEECCCC--CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc
Confidence 11111111 123457889998887 655544221 2234444432 4433333344557889999
Q ss_pred CCCCEEEEE-eCCCcEEEEEcc--CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceE
Q 012996 228 PAEHVFYAG-SRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIV 303 (451)
Q Consensus 228 ~~~~~l~~~-~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~ 303 (451)
|+++.|+++ +.++.|..|++. ++.. ...+....+..+...+..+++++ |++.++...++.|..||..+++.+
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 999877654 557889999984 2211 00122333334456788999999 887777777888999999999999
Q ss_pred EEeecCCCCeeEEEEE-ecCceeeeccC
Q 012996 304 RMFRLAKGPVNNILVV-RRPLYLNLGSF 330 (451)
Q Consensus 304 ~~~~~~~~~v~~l~~s-~~~~~l~~~s~ 330 (451)
..+..+...+++++|. |+++.|..++.
T Consensus 234 ~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 QTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999887889999999 88887755543
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.61 E-value=3.2e-13 Score=123.04 Aligned_cols=264 Identities=10% Similarity=-0.009 Sum_probs=178.1
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCC---------CCccEEEEECCCCceeeeec-C---
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA---------SSGSILYWSWSKPQVEVKSL-P--- 79 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------d~g~i~vw~~~~~~~~~~~~-~--- 79 (451)
+.|.+.|+.+++.+.++.....+ .+ . ++|+|+++.++.. .++.|.++|..+.+...... .
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P--gi---a--~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~ 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP--HP---V--AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC--EE---E--ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC
T ss_pred CeEEEEECCCCEEEEEEECCCCC--ce---E--ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc
Confidence 79999999999999999865533 44 4 9999999988863 23799999999887654432 1
Q ss_pred ----CCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEEEeeCCCcEEEeeCc
Q 012996 80 ----AEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 80 ----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~ 152 (451)
......+.|+|||++++++.. ++.|.+.|+.+++.+..+.... +....|+ ...+++.+.||.+.+.+..
T Consensus 172 r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~ 247 (426)
T 3c75_H 172 RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFA 247 (426)
T ss_dssp CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECC
T ss_pred ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECC
Confidence 235678999999999998764 5789999999999888876422 1223332 2556666677777777773
Q ss_pred chhhhhhhhcccccceecccCCcCce-eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee--eeee-----------cc
Q 012996 153 TVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL--RNIV-----------FP 218 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~-----------~~ 218 (451)
++..... .. ..+.....++ ..+.+.+++ ..++..+..+.+.+.|....... ..+. .+
T Consensus 248 ~~~v~~~---~~----~~~~v~~~p~~~~~~~~~dg--~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p 318 (426)
T 3c75_H 248 DGETKVT---NT----EVFHTEDELLINHPAFSLRS--GRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP 318 (426)
T ss_dssp TTCCEEE---EC----CCCSCTTSCBCSCCEECTTT--CEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE
T ss_pred CCcEEEE---ee----eeeccCCCceeeEeeecCCC--CEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc
Confidence 2111000 00 0111111111 123456666 45555566789999998655421 1111 12
Q ss_pred cceeEEEECCCCCEEEEEeC----------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEE
Q 012996 219 SVIDAIALDPAEHVFYAGSR----------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISG 286 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~ 286 (451)
.....++++|+++.+++... ++.|.++|..+.+ .+.++.. ......+.|+| ++ ++++.
T Consensus 319 ~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k---------vv~~I~v-g~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 319 GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE---------RINKIEL-GHEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC---------EEEEEEE-EEEECEEEECCSSSCEEEEE
T ss_pred CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe---------EEEEEEC-CCCcCeEEEccCCCEEEEEE
Confidence 22334789999998888753 3579999998863 3444432 23588999999 87 77777
Q ss_pred c-CCCcEEEEeCCCCceEEEe
Q 012996 287 S-EDGMVRVWDPITHNIVRMF 306 (451)
Q Consensus 287 ~-~dg~i~iwd~~~~~~~~~~ 306 (451)
. .++.|.++|+.+++.++++
T Consensus 389 n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEe
Confidence 7 5999999999999999997
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.61 E-value=7.6e-14 Score=127.13 Aligned_cols=278 Identities=11% Similarity=-0.009 Sum_probs=184.6
Q ss_pred eccCcccCCCCCC----ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCc
Q 012996 48 ASSQLREQPSASS----GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGR 113 (451)
Q Consensus 48 ~~~~~l~~~~~d~----g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~ 113 (451)
++++.+.++...+ +.|.++|..+.+......-.... .+.++|||++++++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 3444444443332 69999999998887655433334 899999999888875 36789999999999
Q ss_pred ceeeeccc-------cCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEe
Q 012996 114 LLKKWHAH-------YRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIG 184 (451)
Q Consensus 114 ~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~ 184 (451)
.+..+.-. ......+.|+|||++++++.. ++.|.+.|+.+ ...+..+.... +....
T Consensus 161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t-----------~kvv~~I~v~g----~~~~~ 225 (426)
T 3c75_H 161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG-----------KTFDRMLDVPD----CYHIF 225 (426)
T ss_dssp EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT-----------TEEEEEEECCS----EEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC-----------CeEEEEEEcCC----ceeec
Confidence 88776422 234567899999999998874 57899999965 22333333211 12334
Q ss_pred ecCCeeEEEEeeCCCcEEEEEcCCCceeee----eec-ccc-eeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCC
Q 012996 185 YGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVF-PSV-IDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYG 258 (451)
Q Consensus 185 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~-~~~-i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 258 (451)
|.+. ..+++.+.||.+.+.+..+++.... +.. ..+ ...+.+.+++..++..+..+.+++.|.......... .
T Consensus 226 p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~-~ 303 (426)
T 3c75_H 226 PASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRA-P 303 (426)
T ss_dssp EEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECC-C
T ss_pred cCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEee-e
Confidence 4443 5667777899999888866655422 111 111 123567888888888888899999998654311000 0
Q ss_pred ceeee--e--eccCCcceeEEEEec-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCc
Q 012996 259 MHIIG--S--LSDHSKAVTCLAYST-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPL 323 (451)
Q Consensus 259 ~~~~~--~--~~~~~~~v~~~~~~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~ 323 (451)
+.... . ..........++++| ++.+++... ++.|.++|..+.+.+.++... ....++.|+|||+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~ 382 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAE 382 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSS
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCC
Confidence 00000 0 000011222368899 676665532 357999999999999999753 3588999999999
Q ss_pred -eeeecc-CCCCccccccCCCCC
Q 012996 324 -YLNLGS-FSNPHTSSRRHGSQL 344 (451)
Q Consensus 324 -~l~~~s-~d~~i~iw~~~~~~~ 344 (451)
+++++. .++.|.++|..+.+.
T Consensus 383 ~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 383 PLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CEEEEEETTTTEEEEEETTTCCE
T ss_pred EEEEEEcCCCCeEEEEECCCCCE
Confidence 787777 589999999887654
No 207
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.60 E-value=2.5e-12 Score=117.60 Aligned_cols=308 Identities=9% Similarity=0.034 Sum_probs=187.9
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC------CCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------PHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~ 77 (451)
.|++++ .++.|..+|..+|+.+..+...... ...+... ...++..+.+++.+ +.|..+|..+++.....
T Consensus 55 ~v~~~~-~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~v~~~~-g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 55 VVYAAD-RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG---VTVSGGHVYIGSEK-AQVYALNTSDGTVAWQT 129 (376)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE---EEEETTEEEEEETT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCeEEEEEccCCceeeeecCccccccccccCcccccC---ceEeCCEEEEEcCC-CEEEEEECCCCCEEEEE
Confidence 355566 6889999999999998777653211 1222222 23345566666666 89999999988877655
Q ss_pred cCCCCeeE-EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCe-----eEEEEccCCcEEEEeeCCCcEEEeeC
Q 012996 78 LPAEPIKP-IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAV-----TCLVFSEDGSFLISGSEDGCVRIWSL 151 (451)
Q Consensus 78 ~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~s~~~dg~i~vwd~ 151 (451)
.....+.+ .... +..+++++.++.|..+|..+|+.+..+....... ...... +..++.++.++.+..+|.
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 43332221 1222 4467778889999999999999887765432211 122222 446788888999999998
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEH 231 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~ 231 (451)
.++................+.. -..+.......+ ..++.++.++.+..+|..+++.+....... ...+.. ++.
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~-~~~~~~~p~~~~---~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~ 278 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDR-LSDVDTTPVVVN---GVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGN 278 (376)
T ss_dssp TTCCEEEEEECCC------------CCCCCCEEET---TEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETT
T ss_pred CCCcEEEEEecccCCCCccccc-ccccCCCcEEEC---CEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceE--ECC
Confidence 6642211100000000000000 000100001112 467778889999999999999887665333 333333 467
Q ss_pred EEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCC
Q 012996 232 VFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK 310 (451)
Q Consensus 232 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 310 (451)
.+++++.++.++.+|..++.. ..... .....+...... +..|+.++.+|.|.++|..+++.+..+....
T Consensus 279 ~l~~~~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~-~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~ 348 (376)
T 3q7m_A 279 RIYLVDQNDRVMALTIDGGVT---------LWTQSDLLHRLLTSPVLY-NGNLVVGDSEGYLHWINVEDGRFVAQQKVDS 348 (376)
T ss_dssp EEEEEETTCCEEEEETTTCCE---------EEEECTTTTSCCCCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCT
T ss_pred EEEEEcCCCeEEEEECCCCcE---------EEeecccCCCcccCCEEE-CCEEEEEeCCCeEEEEECCCCcEEEEEecCC
Confidence 888889999999999988752 22222 111222222222 6788899999999999999999988877644
Q ss_pred CCeeEEEEEecCceeeeccCCCCccccc
Q 012996 311 GPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 311 ~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
..+....... +..|+.++.+|.+..|+
T Consensus 349 ~~~~~~~~~~-~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 349 SGFQTEPVAA-DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCBCSCCEEE-TTEEEEEBTTSCEEEEE
T ss_pred CcceeCCEEE-CCEEEEEeCCCEEEEEe
Confidence 4443322223 45677788899888775
No 208
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.59 E-value=6e-13 Score=122.47 Aligned_cols=234 Identities=9% Similarity=0.047 Sum_probs=159.4
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC 158 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~ 158 (451)
.....|+|+++++++++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+|+......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC--
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce--
Confidence 4678999999999888877788999999987766555443 23334 99999999998888766 688887743110
Q ss_pred hhhcccccceecc-cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee----eecc-cce-e-EEEECCC-
Q 012996 159 ESQRASHLYLHSF-TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN----IVFP-SVI-D-AIALDPA- 229 (451)
Q Consensus 159 ~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~-~~i-~-~~~~~~~- 229 (451)
...+..+ ......+.+++++++. ..|+.+..++.|+.||..++..... .... ..- . .++|+|+
T Consensus 207 ------~~~~g~~~~~~~~~p~~iav~p~~--g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 207 ------PTRIGQLGSTFSGKIGAVALDETE--EWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp ------EEEEEECCTTSCSCCCBCEECTTS--SEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTT
T ss_pred ------eEEeeeccchhcCCcEEEEEeCCC--CeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCC
Confidence 0011111 1134566788998843 3455577788999999987653322 1111 111 3 8999995
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC---------------CcceeEEEEec-CCEEEEEc-CCCcE
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGS-EDGMV 292 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~l~s~~-~dg~i 292 (451)
+.++++...++.|+.|+..... ..+.++ -.....+++++ +.++++-+ .++.|
T Consensus 279 g~lyv~d~~~~~I~~~~~~g~~-----------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I 347 (409)
T 3hrp_A 279 SNFYMSDQNLSSVYKITPDGEC-----------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCL 347 (409)
T ss_dssp TEEEEEETTTTEEEEECTTCCE-----------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEE
T ss_pred CEEEEEeCCCCEEEEEecCCCE-----------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEE
Confidence 5555555667889999876531 111111 24578999999 88888877 88999
Q ss_pred EEEeCCCCceEEEeecC---------------CCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 293 RVWDPITHNIVRMFRLA---------------KGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 293 ~iwd~~~~~~~~~~~~~---------------~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
+.|++.++.. .++.++ ......++++++|.++++-..++.|+.++
T Consensus 348 ~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 348 RKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp EEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred EEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 9999877764 444443 23578999999988888877777776554
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.58 E-value=3.5e-13 Score=134.45 Aligned_cols=240 Identities=12% Similarity=0.071 Sum_probs=156.4
Q ss_pred ceEEecceEeeccCcccCCCCCCc----cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC----------
Q 012996 38 GLACVGQRFLASSQLREQPSASSG----SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD---------- 103 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g----~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------- 103 (451)
.+.... |||||++||.+..++| .|++||+.+++......+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~--~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 164 ALDAWA--ASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEE--ECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEeEE--ECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 456666 9999999998765433 599999998886543323223468899999 98888776554
Q ss_pred ----EEEEEcCCCcc--eeee--ccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceec
Q 012996 104 ----IYMWEVASGRL--LKKW--HAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 104 ----i~iwd~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
|++|++.++.. ...+ ..+...+..+.|+|||++|+..+.++ .|.+||+.++ .......
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~---------~~~~~~~ 311 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG---------KIGPVTA 311 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT---------EECCCEE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC---------CCcccEE
Confidence 89999877653 2222 23334588999999999988777544 7999998541 0010223
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeC----CCcEEEEEcCCC--ceeeeee-cccceeEEEECCCCCEEEEEeCCCcEE
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASE----DRTCKVWSLLKG--RLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIY 243 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~----d~~i~iwd~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~ 243 (451)
+..+...+.... ++++ ..|+..+. ++.|.+||+.++ .....+. +...+..++++ ++.++++...++..+
T Consensus 312 l~~~~~~~~~~~-~~dg--~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 312 LIPDLKAQWDFV-DGVG--DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EECSSSSCEEEE-EEET--TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred ecCCCCceEEEE-eccC--CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 334444444443 4666 55655554 345999999875 2333333 33456677776 666778888888877
Q ss_pred EEEccCCCCCCCCCCceeeeeecc-CCcceeEEEEec-CCEEE-EE---cCCCcEEEEeCCCCc
Q 012996 244 IAALNAESPSTSSYGMHIIGSLSD-HSKAVTCLAYST-GDLLI-SG---SEDGMVRVWDPITHN 301 (451)
Q Consensus 244 i~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~l~-s~---~~dg~i~iwd~~~~~ 301 (451)
+|.+.... .....+.. +...+..+.++| +..|+ +. ...++|.+||+.+++
T Consensus 388 l~~~~~~g--------~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 388 VLAFDLDG--------KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEETTS--------CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEEeCCC--------CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 77654211 22333433 356788899999 66555 32 345789999998876
No 210
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=1.1e-12 Score=116.73 Aligned_cols=232 Identities=9% Similarity=0.056 Sum_probs=155.9
Q ss_pred eEEecceEeeccCcccC-------CCCCCccEEEEECCCCceeeeec-----CCCCeeEEEECCC-CcEEEEeccCCCEE
Q 012996 39 LACVGQRFLASSQLREQ-------PSASSGSILYWSWSKPQVEVKSL-----PAEPIKPIAANSH-GTYIAGGGQSGDIY 105 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~-------~~~d~g~i~vw~~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 105 (451)
...++ |.+++.++++ ...+ +.|.+|+..+++...... +...+.+++++++ |+++++.. .+.|.
T Consensus 20 ~~~~~--~~~~g~l~~~~~~~~~~~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 20 AEGPV--FDKNGDFYIVAPEVEVNGKPA-GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLL 95 (314)
T ss_dssp CEEEE--ECTTSCEEEEETTCEETTEEC-CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEE
T ss_pred ccCce--ECCCCCEEEEEeccccCCCCC-CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEE
Confidence 34555 8888887776 4555 899999987776643332 3467899999999 77666544 34799
Q ss_pred EEEcCCCcceee-ecc----ccCCeeEEEEccCCcEEEEeeCC---------------CcEEEeeCcchhhhhhhhcccc
Q 012996 106 MWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSED---------------GCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 106 iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~d---------------g~i~vwd~~~~~~~~~~~~~~~ 165 (451)
+||.. ++.... ... ....+.+++++++|+++++...+ +.|..|+.. .
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------g 162 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD------------G 162 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT------------S
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC------------C
Confidence 99987 665433 211 12458899999999887776655 456666652 1
Q ss_pred cceecccCCcCceeEEEEe----ecCCeeEEEEe-eCCCcEEEEEcC-CCce-----eeeee-cc-cceeEEEECCCCCE
Q 012996 166 LYLHSFTGHTLRITDIVIG----YGGVSATIVSA-SEDRTCKVWSLL-KGRL-----LRNIV-FP-SVIDAIALDPAEHV 232 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~----~~~~~~~l~s~-~~d~~i~iwd~~-~~~~-----~~~~~-~~-~~i~~~~~~~~~~~ 232 (451)
.. ..+..+......++++ +++ +.++.+ ..++.|.+||+. +++. ...+. +. ..+..++++++|.+
T Consensus 163 ~~-~~~~~~~~~~~~i~~~~~~d~dg--~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 239 (314)
T 1pjx_A 163 QM-IQVDTAFQFPNGIAVRHMNDGRP--YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNL 239 (314)
T ss_dssp CE-EEEEEEESSEEEEEEEECTTSCE--EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCE
T ss_pred CE-EEeccCCCCcceEEEecccCCCC--CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCE
Confidence 11 1112233445788888 765 555444 567899999986 4432 11221 11 56788999999988
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCC
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~ 299 (451)
+++...++.|.+||..++. .+..+..+...+.++++++ ++ ++++...++.|..|++..
T Consensus 240 ~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 240 LVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8887788999999987442 2233445557899999999 87 445556678899999764
No 211
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.57 E-value=3.9e-12 Score=124.84 Aligned_cols=308 Identities=13% Similarity=0.084 Sum_probs=188.6
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCC------ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPH------GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~ 77 (451)
.|++++ .++.|..+|..+|+.+.++........ ...... ....+..+++++.+ +.|..+|..+++.....
T Consensus 72 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~v~~~d-g~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTG-PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG--VAVWKGKVYVGVLD-GRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEEC-GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCc--cEEECCEEEEEccC-CEEEEEECCCCCEeeee
Confidence 355566 688999999999999988764322100 000011 22345566677666 99999999999887654
Q ss_pred cCC---CCeeEEEECC---CCcEEEEec------cCCCEEEEEcCCCcceeeeccc------------------------
Q 012996 78 LPA---EPIKPIAANS---HGTYIAGGG------QSGDIYMWEVASGRLLKKWHAH------------------------ 121 (451)
Q Consensus 78 ~~~---~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~------------------------ 121 (451)
... .....+..+| ++. +++++ .+|.|+.||..+|+.+..+...
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 332 1111222233 444 44443 3689999999999988766421
Q ss_pred -------cCCeeEEEEccCCcEEEEeeCCCc-------------------EEEeeCcchhhhhhhhcccccceecccCCc
Q 012996 122 -------YRAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT 175 (451)
Q Consensus 122 -------~~~v~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (451)
......+.++|+...++.++.++. |..+|..++........... ....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~-d~wd~~-~~ 304 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG-DAWDYT-AT 304 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT-CCSCCC-CC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc-cccccc-CC
Confidence 011125788888888888887764 88999876432211100000 000000 11
Q ss_pred CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc-----------------------------------
Q 012996 176 LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS----------------------------------- 219 (451)
Q Consensus 176 ~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------------------------------- 219 (451)
....-.....++. ...++.++.+|.++++|..+|+.+.......
T Consensus 305 ~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~ 384 (689)
T 1yiq_A 305 QHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA 384 (689)
T ss_dssp SCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred CCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence 1111122223441 1378899999999999999999875433111
Q ss_pred -----ceeEEEECCCCCEEEEEeC---------------------------------------------CCcEEEEEccC
Q 012996 220 -----VIDAIALDPAEHVFYAGSR---------------------------------------------DGSIYIAALNA 249 (451)
Q Consensus 220 -----~i~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~ 249 (451)
.-..++++|+..++++... +|.|+.||+.+
T Consensus 385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t 464 (689)
T 1yiq_A 385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK 464 (689)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence 0112688888888887643 36688888887
Q ss_pred CCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecCce-ee
Q 012996 250 ESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRPLY-LN 326 (451)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~~~-l~ 326 (451)
++ .+-....+ .++..-.+.. +.+++.|+.||.|+.||..+|+.+.+++...+. ..-+.|..+|+. ++
T Consensus 465 G~---------~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 465 QQ---------AAWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TE---------EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CC---------eEeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 63 23333333 2233334555 889999999999999999999999998865442 245777888864 44
Q ss_pred ec
Q 012996 327 LG 328 (451)
Q Consensus 327 ~~ 328 (451)
+.
T Consensus 535 ~~ 536 (689)
T 1yiq_A 535 FM 536 (689)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 212
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.57 E-value=6.5e-12 Score=110.77 Aligned_cols=237 Identities=12% Similarity=0.046 Sum_probs=167.8
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
...+.++++.++|++.++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|..||...
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g----- 92 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKG----- 92 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-----
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCC-----
Confidence 4578999999999988887778899999987 55433 2233346789999999998877776678899999741
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeee-ee-cccceeEEEECCCCCEEEEE
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRN-IV-FPSVIDAIALDPAEHVFYAG 236 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~ 236 (451)
.............+.++++.+++ .++++...++.|..||.. ++.... +. ....+..++++++++++++.
T Consensus 93 ------~~~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 93 ------GFTEYPLPQPDSGPYGITEGLNG--DIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp ------CEEEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred ------CeEEecCCCCCCCCccceECCCC--CEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEe
Confidence 11111122233567888888776 677776668899999987 554422 22 23568899999999966666
Q ss_pred eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEE-eecCCCCee
Q 012996 237 SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRM-FRLAKGPVN 314 (451)
Q Consensus 237 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~ 314 (451)
..++.|..+|. .+. ........+...+.++++++ +.+.++....+.|.+||. +++.... +..+...+.
T Consensus 164 ~~~~~i~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~ 233 (300)
T 2qc5_A 164 NQNNSIGRITN-TGK--------LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPH 233 (300)
T ss_dssp TTTTEEEEECT-TCC--------EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred cCCCeEEEECC-CCc--------EEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCce
Confidence 66788999988 332 11112223446788999999 877777777788999998 5554432 333456789
Q ss_pred EEEEEecCceeeeccCCCCccccccCC
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
+++++++|...++...++.|..++..+
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~~g 260 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITNDN 260 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECTTS
T ss_pred EEEECCCCCEEEeccCCCeEEEECCCC
Confidence 999999998777776778888888743
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=2e-13 Score=122.62 Aligned_cols=179 Identities=10% Similarity=0.062 Sum_probs=133.2
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
++..+++++...++++|+.+ .+.+|++.................. ...+.. |+.++| ++ .+|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~--~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HG--DQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ET--TEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CC--CEEEEE-cCCcEEE
Confidence 68999999999999999998 5666998665422110111111111 223556 999999 55 788888 8899999
Q ss_pred EEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC
Q 012996 204 WSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD 281 (451)
Q Consensus 204 wd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 281 (451)
||+++........ +...+.++.+.+.. +++++.||.+.+||+.... .. .+...|++++||| |
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---------~~----~~~~~Vs~v~WSpkG- 174 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---------TK----QLAQNVTSFDVTNSQ- 174 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------EE----EEEESEEEEEECSSE-
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------cc----cccCCceEEEEcCCc-
Confidence 9998766544443 56667777766543 8889999999999998763 11 1456899999999 7
Q ss_pred EEEEEcCCCcEEEEeCCCCce--EEEe------e---cCCCCeeEEEEEecCceeee
Q 012996 282 LLISGSEDGMVRVWDPITHNI--VRMF------R---LAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 282 ~l~s~~~dg~i~iwd~~~~~~--~~~~------~---~~~~~v~~l~~s~~~~~l~~ 327 (451)
++.|..||++++|+...+.. .+++ . .|...|.+|.|.+++.+|++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 78899999999999887775 5666 2 36788999999999999976
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.55 E-value=1.8e-12 Score=127.03 Aligned_cols=299 Identities=13% Similarity=0.112 Sum_probs=189.0
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCc------eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~ 77 (451)
.|++++ .++.|..+|..+|+.+.++......... +..-. ....+..+++++.+ +.|..+|..+++.....
T Consensus 79 ~vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~v~v~~~d-g~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 79 IMYVSA-SWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG--VALWKGKVYVGAWD-GRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EEEEEC-GGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEEE
T ss_pred EEEEEC-CCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC--ceEECCEEEEEcCC-CEEEEEECCCCCEEeee
Confidence 345556 6789999999999999888654321000 11111 22245666666666 99999999999887664
Q ss_pred cCC------CCeeEEEECCCCcEEEEecc------CCCEEEEEcCCCcceeeeccccC----------------------
Q 012996 78 LPA------EPIKPIAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYR---------------------- 123 (451)
Q Consensus 78 ~~~------~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~---------------------- 123 (451)
... ..+.+--.. .+..+++++. +|.|+.||..+|+.+..+.....
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 432 112111011 2345555543 68999999999998877643211
Q ss_pred ----------CeeEEEEccCCcEEEEeeCCC-------------------cEEEeeCcchhhhhhhhcccccceecccCC
Q 012996 124 ----------AVTCLVFSEDGSFLISGSEDG-------------------CVRIWSLLTVFEECESQRASHLYLHSFTGH 174 (451)
Q Consensus 124 ----------~v~~~~~~~~~~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 174 (451)
....++++|++..++.++.++ .|..+|..++..... .....|
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~---------~~~~~~ 304 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWH---------YQETPG 304 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE---------EESSTT
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEE---------EecCCC
Confidence 113578888888888877664 488888866432111 111112
Q ss_pred c-------CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc------------ce-------------
Q 012996 175 T-------LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS------------VI------------- 221 (451)
Q Consensus 175 ~-------~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------------~i------------- 221 (451)
. ....-+....++. ...++.++.+|.++++|..+|+.+..+.... .+
T Consensus 305 d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~ 384 (677)
T 1kb0_A 305 DNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQD 384 (677)
T ss_dssp CCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEE
T ss_pred cccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccE
Confidence 1 1111122222331 1578899999999999999999887665211 01
Q ss_pred -----------eEEEECCCCCEEEEEeCC-------------------------------------------CcEEEEEc
Q 012996 222 -----------DAIALDPAEHVFYAGSRD-------------------------------------------GSIYIAAL 247 (451)
Q Consensus 222 -----------~~~~~~~~~~~l~~~~~d-------------------------------------------g~i~i~d~ 247 (451)
..++++|+..++++...+ |.|..||+
T Consensus 385 ~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~ 464 (677)
T 1kb0_A 385 AVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDP 464 (677)
T ss_dssp CSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEET
T ss_pred ECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeC
Confidence 146888988888886532 67888888
Q ss_pred cCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCcee
Q 012996 248 NAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPLYL 325 (451)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~~l 325 (451)
.+++ .+-... +..++....+.. +.+++.++.||.+++||..+++.+.++....+ ...-+.|.++|+.+
T Consensus 465 ~tG~---------~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~ 534 (677)
T 1kb0_A 465 VAQK---------AAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (677)
T ss_dssp TTTE---------EEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCc---------EEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence 8763 222322 233444445556 88889999999999999999999999985543 33446677888644
Q ss_pred e
Q 012996 326 N 326 (451)
Q Consensus 326 ~ 326 (451)
+
T Consensus 535 v 535 (677)
T 1kb0_A 535 V 535 (677)
T ss_dssp E
T ss_pred E
Confidence 3
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.55 E-value=1.7e-12 Score=114.93 Aligned_cols=233 Identities=12% Similarity=0.047 Sum_probs=156.8
Q ss_pred CCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhh
Q 012996 79 PAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEE 157 (451)
Q Consensus 79 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 157 (451)
.........|+|+++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+... .
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-Q-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-C--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCCC-C--
Confidence 445677899999998 5677777889999997 454 445555667889999999999776655667899998731 0
Q ss_pred hhhhcccccceecccC-CcCceeEEEEeecCCeeEEEE----eeC-------------CCcEEEEEcCCCceeeeeeccc
Q 012996 158 CESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIVS----ASE-------------DRTCKVWSLLKGRLLRNIVFPS 219 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~s----~~~-------------d~~i~iwd~~~~~~~~~~~~~~ 219 (451)
.........+ ....+.++++.+++ .++++ |.. .+.|..||..+++..... ...
T Consensus 118 ------~~~~~~~~~~~~~~~~~~i~~d~dG--~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~ 188 (305)
T 3dr2_A 118 ------AHLLVGRYAGKRLNSPNDLIVARDG--AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLD 188 (305)
T ss_dssp ------EEEEECEETTEECSCCCCEEECTTS--CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EES
T ss_pred ------EEEEEeccCCCccCCCCCEEECCCC--CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCC
Confidence 0001111111 12346678888887 67775 332 356888887666654433 344
Q ss_pred ceeEEEECCCCCEEEEEeCC------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcE
Q 012996 220 VIDAIALDPAEHVFYAGSRD------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMV 292 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i 292 (451)
....++|+|+++.|+++... +.|+.|++..... . ...... .........+++++ |+ |.+++.+| |
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l-~---~~~~~~--~~~~~~pdgi~~d~~G~-lwv~~~~g-v 260 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL-H---DRRHFA--SVPDGLPDGFCVDRGGW-LWSSSGTG-V 260 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE-E---EEEEEE--CCSSSCCCSEEECTTSC-EEECCSSE-E
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc-c---CCeEEE--ECCCCCCCeEEECCCCC-EEEecCCc-E
Confidence 56789999999988887665 7899999875420 0 001111 11234456788998 77 44445554 9
Q ss_pred EEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCcc
Q 012996 293 RVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 293 ~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~ 335 (451)
.+|+. +++.+..+..+. .+.+++|+|+++.|..++.++..+
T Consensus 261 ~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 99997 688888887665 589999999998888777665433
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.55 E-value=1.3e-11 Score=110.21 Aligned_cols=227 Identities=13% Similarity=0.048 Sum_probs=150.9
Q ss_pred CeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
-..+..|+|+ +.++++...++.|..||..+++.. .+. ....+.++.|+++++++++. .+ .|.+||..++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~----- 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----- 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-----
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-----
Confidence 3467889997 556667677889999998876543 232 34679999999999877654 44 49999985421
Q ss_pred hcccccceeccc--CCcCceeEEEEeecCCeeEEEEeeC------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCE
Q 012996 161 QRASHLYLHSFT--GHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHV 232 (451)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~i~~i~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~ 232 (451)
...+.... .....+.++++++++ +++++... .+.|..++ +++.............++|+|+++.
T Consensus 121 ----~~~~~~~~~~~~~~~~~~i~~d~~G--~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 121 ----LTLHAELESDLPGNRSNDGRMHPSG--ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp ----EEEEECSSTTCTTEEEEEEEECTTS--CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCE
T ss_pred ----EEEEeeCCCCCCCCCCCCEEECCCC--CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCE
Confidence 11111111 112467889998887 55554432 24566666 4544333233345678999999987
Q ss_pred EEEE-eCCCcEEEEEcc--CC-CCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 233 FYAG-SRDGSIYIAALN--AE-SPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 233 l~~~-~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
++++ +.++.|.+|++. ++ ... .......+......+..+++.+ +.+.++...++.|.+||. +++.+..+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~----~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~ 267 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTG----KAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE 267 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSS----CCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred EEEEECCCCEEEEEEcccccCCccc----CceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence 7665 456899999986 33 110 0122223333445678899998 877777666788999998 688888888
Q ss_pred cCCCCeeEEEEE-ecCceeeeccC
Q 012996 308 LAKGPVNNILVV-RRPLYLNLGSF 330 (451)
Q Consensus 308 ~~~~~v~~l~~s-~~~~~l~~~s~ 330 (451)
.+...+++++|+ |++..|+.++.
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCcEEEEEecCCCCEEEEEec
Confidence 777789999999 88877755443
No 217
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.55 E-value=3e-13 Score=121.48 Aligned_cols=174 Identities=10% Similarity=0.019 Sum_probs=130.3
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc---------cee-eeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR---------LLK-KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
.++..+++++...++++|+.++ +.+|++.+.. ... ....+.. |+.++| |+++|+++ .++.|++||
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 4799999999999999999874 6779976543 111 1223556 999999 88999998 889999999
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCC
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAE 230 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~ 230 (451)
+.+.. .......|...+.++.+.+. .+++++.||.|.+||+.++.... +...|.+++|+|+|
T Consensus 113 v~sl~-----------~~~~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG 174 (388)
T 1xip_A 113 LEELS-----------EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ 174 (388)
T ss_dssp SSSTT-----------CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE
T ss_pred chhhh-----------ccCccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc
Confidence 96532 22234456667777765533 38888999999999999877643 45689999999999
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee------c---cCCcceeEEEEec-CCEEEEE
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL------S---DHSKAVTCLAYST-GDLLISG 286 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------~---~~~~~v~~~~~~~-~~~l~s~ 286 (451)
+++|..||.+++|+...... ....++ . +|...|.+|.|.+ +.++++-
T Consensus 175 --~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 175 --LAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --eEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 78899999999998876531 002222 2 4789999999999 7777763
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.55 E-value=7.5e-12 Score=115.14 Aligned_cols=236 Identities=8% Similarity=0.026 Sum_probs=159.8
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCcc
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRL 114 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~ 114 (451)
.....++ ++++++++++...+ +.|++||..++............. ++|+|+++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la--~d~~g~lyv~d~~~-~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIA--AVGNNTVLAYQRDD-PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEE--ECSTTEEEEEETTT-TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEE--EeCCCCEEEEecCC-CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 3456677 88999876666655 899999998877665444334444 99999999988887766 788998876654
Q ss_pred eeee----ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec--ccCCcCce--eEEEEeec
Q 012996 115 LKKW----HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS--FTGHTLRI--TDIVIGYG 186 (451)
Q Consensus 115 ~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~i~~~~~ 186 (451)
...+ ......+.+++++|++..|+.+..++.|..||..+.. ...... ..++...- ..++|+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~---------~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE---------VTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC---------EEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC---------EEEEecccccCCCCCCccccEEEeCC
Confidence 4343 2245677899999954455557778899999985421 111100 11122222 38999985
Q ss_pred CCeeEEEEeeCCCcEEEEEcCCCceeeeeec---------------ccceeEEEECCCCCEEEEEe-CCCcEEEEEccCC
Q 012996 187 GVSATIVSASEDRTCKVWSLLKGRLLRNIVF---------------PSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAE 250 (451)
Q Consensus 187 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 250 (451)
+. .++++-...+.|+.|+.... ....... -.....++++|+++++++-. .++.|+.|++..+
T Consensus 278 ~g-~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 278 DS-NFYMSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp TT-EEEEEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred CC-EEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 32 67777778889999997543 2221111 13478999999999777777 7889999997554
Q ss_pred CCCCCCCCceeeeeeccC---------------CcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 251 SPSTSSYGMHIIGSLSDH---------------SKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
. +..+.++ -.....+++++ +.++++-..++.|+.+++
T Consensus 356 ~----------v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 356 Y----------VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp E----------EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred E----------EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 2 2222222 24678899999 888888888888887764
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.52 E-value=1.1e-12 Score=117.63 Aligned_cols=290 Identities=13% Similarity=0.071 Sum_probs=181.9
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCe
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPI 83 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v 83 (451)
|..++ .++.|..|| .+++....+.. +...+..+. ..+++.. .+++. + |..+|. ++....... .....
T Consensus 33 l~v~t-~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~--~~~~g~l-~v~t~--~-l~~~d~-~g~~~~~~~~~~~~~ 100 (330)
T 3hxj_A 33 IYLGS-SNKNLYAIN-TDGSVKWFFKS---GEIIECRPS--IGKDGTI-YFGSD--K-VYAINP-DGTEKWRFDTKKAIV 100 (330)
T ss_dssp EECSS-TTTTTEEEC-TTSCEEESSCG---GGEEEECCE--ETTTTEE-CCSSC--E-EEEECC-CGGGGGGSCC-----
T ss_pred EEEEc-CCCEEEEEC-CCCcEEEEEec---CCCcccceE--EecCCcE-EEecC--c-EEEECC-CCcEEEEEECCCCcc
Confidence 45566 788999999 88888665432 112223333 4345554 34433 4 888886 433322222 22222
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
....+. +..+.+++.++.|..+|.. ++.......+...+.++...+++. ++.++.++.|..+|.. +
T Consensus 101 ~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g--------- 166 (330)
T 3hxj_A 101 SDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G--------- 166 (330)
T ss_dssp CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---------
T ss_pred cCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---------
Confidence 233333 4556777888899999988 777766665656667777777776 5667778899999984 1
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeCCCcE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSRDGSI 242 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 242 (451)
.....+......+.++....++ . ++.++ +.+..+| .+++....+. ....+.++..++++. +++++.++.+
T Consensus 167 --~~~~~~~~~~~~~~~~~~d~~g--~-l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl 237 (330)
T 3hxj_A 167 --TEKWRFKTNDAITSAASIGKDG--T-IYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHL 237 (330)
T ss_dssp --CEEEEEECSSCCCSCCEECTTC--C-EEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEE
T ss_pred --CEeEEEecCCCceeeeEEcCCC--E-EEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeE
Confidence 1222222233445556655554 4 44444 8899999 7777766655 335677888888764 5667777888
Q ss_pred EEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecC
Q 012996 243 YIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRP 322 (451)
Q Consensus 243 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~ 322 (451)
..+|.... .+..+......+.++...++..|..++.+|.|..+|. +++.+..+......+.++..+++|
T Consensus 238 ~~~~~~g~----------~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g 306 (330)
T 3hxj_A 238 YAINPDGT----------EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENG 306 (330)
T ss_dssp EEECTTSC----------EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTC
T ss_pred EEECCCCC----------EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCC
Confidence 88874332 2223333333444555655567778888989999995 788877777666678888887877
Q ss_pred ceeeeccCCCCccccccCC
Q 012996 323 LYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 323 ~~l~~~s~d~~i~iw~~~~ 341 (451)
. |..++.+|.+.+.....
T Consensus 307 ~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 307 T-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp C-EEEECTTSCEEEEEC--
T ss_pred E-EEEEcCCCeEEEEeccc
Confidence 5 55677889888776553
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=3.1e-11 Score=106.35 Aligned_cols=218 Identities=10% Similarity=0.081 Sum_probs=143.3
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc----c
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H 121 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~ 121 (451)
|++++..+..+...++.|..||..++..... .....+.+++++|+|+++++ . ++.|.+||..+++....... .
T Consensus 20 w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~ 96 (297)
T 3g4e_A 20 WEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKK 96 (297)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCS
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCC
Confidence 8886555444444348999999988765432 34578999999999996555 3 46799999987765432221 1
Q ss_pred cCCeeEEEEccCCcEEEEeeCC---------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE
Q 012996 122 YRAVTCLVFSEDGSFLISGSED---------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI 192 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l 192 (451)
...+.+++++|+|+++++...+ ..-.+|.+.. . .. ...+..+......++|++++. .++
T Consensus 97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~---------~-g~-~~~~~~~~~~pngi~~spdg~-~ly 164 (297)
T 3g4e_A 97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP---------D-HH-VKKYFDQVDISNGLDWSLDHK-IFY 164 (297)
T ss_dssp SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT---------T-SC-EEEEEEEESBEEEEEECTTSC-EEE
T ss_pred CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC---------C-CC-EEEEeeccccccceEEcCCCC-EEE
Confidence 2357889999999976654322 2335555422 1 11 111222334567899999873 344
Q ss_pred EEeeCCCcEEEEEc--CCCcee--eee---e-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 193 VSASEDRTCKVWSL--LKGRLL--RNI---V-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 193 ~s~~~d~~i~iwd~--~~~~~~--~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
++.+.++.|.+||+ .++... ..+ . ....+..++++++|++.++....+.|..||..++ +.+..
T Consensus 165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---------~~~~~ 235 (297)
T 3g4e_A 165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---------KRLQT 235 (297)
T ss_dssp EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---------CEEEE
T ss_pred EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---------eEEEE
Confidence 56666889999997 455432 112 1 2356789999999987777777888999998865 34556
Q ss_pred eccCCcceeEEEEe-c-CCEEEEEc
Q 012996 265 LSDHSKAVTCLAYS-T-GDLLISGS 287 (451)
Q Consensus 265 ~~~~~~~v~~~~~~-~-~~~l~s~~ 287 (451)
+..+...+++++|. | ++.|+.++
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEE
T ss_pred EECCCCCceEEEEeCCCCCEEEEEc
Confidence 66666789999998 6 55544443
No 221
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.47 E-value=5e-12 Score=113.32 Aligned_cols=268 Identities=8% Similarity=-0.091 Sum_probs=173.7
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCC---------CCCccEEEEECCCCceeeeec-C----
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPS---------ASSGSILYWSWSKPQVEVKSL-P---- 79 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---------~d~g~i~vw~~~~~~~~~~~~-~---- 79 (451)
+|.+.|..+++.+.++.....+ . +. ++|+++++.++. ..++.|.+||..+.+...... +
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~---i~--~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--L---AV--AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--E---EE--ECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--c---eE--ECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 7889999999999999876543 3 44 999999999886 234899999999988765542 2
Q ss_pred ---CCCeeEEEECCCCcEEEEecc--CCCEEE--EEcCCCcceeeeccccCCeeEEEEccCC-cEEEEeeCCCcEEEeeC
Q 012996 80 ---AEPIKPIAANSHGTYIAGGGQ--SGDIYM--WEVASGRLLKKWHAHYRAVTCLVFSEDG-SFLISGSEDGCVRIWSL 151 (451)
Q Consensus 80 ---~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~ 151 (451)
......++++|||++++++.. +..+.+ +|+.+ +..+... +. ..+.|++ ..+++.+.||.+.+.|+
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~ 192 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDL 192 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEEC
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEEC
Confidence 135779999999999998864 356888 88877 4444321 11 1223433 34556677888888888
Q ss_pred cchhhhhhhhcccccce----ecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc--eeeeeec--------
Q 012996 152 LTVFEECESQRASHLYL----HSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR--LLRNIVF-------- 217 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~-------- 217 (451)
.+.... ..... ..+.....+. . .+++ ..++..+. +.+.+.|..+.. .+..+..
T Consensus 193 ~~~~~~------~~~v~~~~t~~i~vg~~P~---~-~~~~--~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~ 259 (368)
T 1mda_H 193 AAAPAA------AGIVGAQCTGAQNCSSQAA---Q-ANYP--GMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKAD 259 (368)
T ss_dssp CSSCCC------CEECCCCSCTTSCBCSCCE---E-ETTT--TEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHT
T ss_pred cccccc------CCeEEEEeeeeeeCCCCcc---c-cccC--CEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccc
Confidence 540000 00000 0111112222 2 4444 34444445 899999986532 2332221
Q ss_pred ---ccceeEEEECCCCCEEEEEeC---------CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EE
Q 012996 218 ---PSVIDAIALDPAEHVFYAGSR---------DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LL 283 (451)
Q Consensus 218 ---~~~i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l 283 (451)
+.....++++|+++.++++.. ++.+.++|+.+.+ .+..+... .....|+|+| ++ .+
T Consensus 260 ~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~---------vv~~i~vg-~~p~gi~~s~Dg~~l~ 329 (368)
T 1mda_H 260 NFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ---------TSGPISNG-HDSDAIIAAQDGASDN 329 (368)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC---------EEECCEEE-EEECEEEECCSSSCEE
T ss_pred ccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe---------EEEEEECC-CCcceEEECCCCCEEE
Confidence 122233789999999887643 2356699998863 34444332 2688999999 76 56
Q ss_pred EEEc-CCCcEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 284 ISGS-EDGMVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 284 ~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
++.. .++.|.++|+.+++.+.++..... -..+++.
T Consensus 330 va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 330 YANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred EEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 6666 599999999999999999986544 3455544
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.45 E-value=3.3e-11 Score=108.46 Aligned_cols=244 Identities=9% Similarity=0.023 Sum_probs=157.1
Q ss_pred CCeeEEEECCCCcEEEEec--cCCCEEEEEcCCCcceeee-------ccccCCeeEEEEccCCcEEEEeeC-----CCcE
Q 012996 81 EPIKPIAANSHGTYIAGGG--QSGDIYMWEVASGRLLKKW-------HAHYRAVTCLVFSEDGSFLISGSE-----DGCV 146 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i 146 (451)
..+..++++|+|+++++.. .++.++||.+.+++.. .+ ..|...+.+++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 6789999999999988853 2343555555455432 22 235568899999999886665433 5789
Q ss_pred EEeeCcchhhhhhhhcccccceecc------cCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCceeeeeec
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGRLLRNIVF 217 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~ 217 (451)
.+||+.++. .+..+ ..+...+.++++++++. ..+++.. .++.|.+||+.+++..+.+..
T Consensus 96 ~~~d~~tg~-----------~~~~~~~~~~~~~~~~~~~~v~vd~~~g-~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~ 163 (343)
T 2qe8_A 96 VAWDTLNNQ-----------LSRVIYLPPPITLSNSFVNDLAVDLIHN-FVYISDPAPDDKAALIRVDLQTGLAARVLQG 163 (343)
T ss_dssp EEEETTTTE-----------EEEEEECCTTTSCTTCCCCEEEEETTTT-EEEEEECCSGGGCEEEEEETTTCCEEEECTT
T ss_pred EEEECCCCe-----------EEEEEECChhhcccccccceEEEecCCC-EEEEEcCccCCCCeEEEEECCCCCEEEEecC
Confidence 999986532 11111 12334568899987542 4555555 678999999987765543311
Q ss_pred ------------------------------ccceeEEEECCCCCEEEEEeCCC-cEEEEEccCCCCCCCCCCceeee--e
Q 012996 218 ------------------------------PSVIDAIALDPAEHVFYAGSRDG-SIYIAALNAESPSTSSYGMHIIG--S 264 (451)
Q Consensus 218 ------------------------------~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~--~ 264 (451)
...+..++|+|+++.|+++...+ .++.++......... ....... .
T Consensus 164 ~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 242 (343)
T 2qe8_A 164 YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIE 242 (343)
T ss_dssp CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCE
T ss_pred CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceE
Confidence 02357899999999998887666 565555432110000 0000000 1
Q ss_pred eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 265 LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 265 ~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
..++......+++++ +.++++...++.|.+||..+++....... +....++++|.+++.++++.+..+.+.+|.
T Consensus 243 ~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 243 RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 123445677899999 99999988999999999856764333332 244689999999998888876666665554
No 223
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=1.6e-11 Score=121.24 Aligned_cols=239 Identities=11% Similarity=0.061 Sum_probs=153.6
Q ss_pred CceEEecceEeeccCcccCC----CCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCC---------
Q 012996 37 HGLACVGQRFLASSQLREQP----SASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGD--------- 103 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--------- 103 (451)
..+..+. |||+|+++|.+ |.+...|++||+.+++......+......++|+ ||+.|+.++.+..
T Consensus 129 ~~l~~~~--~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 129 TALDQLS--FSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CEEEEEE--ECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred EEEEEEE--ECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 4566666 99999999842 333378999999998864432222224678999 9999988877743
Q ss_pred ----EEEEEcCCCcc----eeeecc-ccCCeeEEEEccCCcEEEEeeC----CCcEEEeeCcchhhhhhhhcccccceec
Q 012996 104 ----IYMWEVASGRL----LKKWHA-HYRAVTCLVFSEDGSFLISGSE----DGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 104 ----i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
|++|++.++.. +..... |...+..+.|+|||++|+.... ++.|.++|+.+. ......
T Consensus 206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~----------~~~~~~ 275 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE----------NAPLLT 275 (693)
T ss_dssp CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST----------TCCCEE
T ss_pred CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC----------CCceEE
Confidence 99999877643 223333 4556788999999998864432 347999998542 112233
Q ss_pred ccCCcCceeEEEEeecCCeeEEEEeeCC---CcEEEEEcCCCce--eee-eecccceeEEEECCCCCEEEEEeCCC---c
Q 012996 171 FTGHTLRITDIVIGYGGVSATIVSASED---RTCKVWSLLKGRL--LRN-IVFPSVIDAIALDPAEHVFYAGSRDG---S 241 (451)
Q Consensus 171 ~~~~~~~i~~i~~~~~~~~~~l~s~~~d---~~i~iwd~~~~~~--~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg---~ 241 (451)
+..+....... +++++. .+++.+..+ +.|..+|+.++.. ... +.+...+. .|+++++.|+....++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE
Confidence 44455554444 555553 455555444 5799999987654 223 33444443 8889888887765544 6
Q ss_pred EEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEec-CCEEEEEcCC----CcEEEEeCCCCce
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYST-GDLLISGSED----GMVRVWDPITHNI 302 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~l~s~~~d----g~i~iwd~~~~~~ 302 (451)
|++|++.... ...+. .+...+..+.+++ +..++....+ +.|..||+.+++.
T Consensus 352 l~~~d~~g~~----------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 352 VEQFDYEGKR----------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEEECTTSCE----------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEEEECCCCe----------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8888887532 12222 2345677777787 5555544433 7899999887653
No 224
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.45 E-value=5.1e-12 Score=124.88 Aligned_cols=241 Identities=15% Similarity=0.080 Sum_probs=153.8
Q ss_pred CCCeeEEEECCCCcEEEEe-----ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCc---------
Q 012996 80 AEPIKPIAANSHGTYIAGG-----GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGC--------- 145 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~--------- 145 (451)
...+..++|||||++||.+ +....|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~ 205 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART 205 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence 3468888999999999853 33356999999999865431 111113568899 9999998887743
Q ss_pred ----EEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecCCeeEEE-EeeC---CCcEEEEEcCCCc-eeeee
Q 012996 146 ----VRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGGVSATIV-SASE---DRTCKVWSLLKGR-LLRNI 215 (451)
Q Consensus 146 ----i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~~l~-s~~~---d~~i~iwd~~~~~-~~~~~ 215 (451)
|.+|++.+... ....+..... |.....++.+++++ ++|+ +.+. +..|+++|+.++. ....+
T Consensus 206 ~~~~v~~~~lgt~~~-------~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 206 DQHKVYFHRLGTAQE-------DDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp CCCEEEEEETTSCGG-------GCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred CCcEEEEEECCCCcc-------cceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 89999865211 1123333344 55567788999998 5554 3332 3589999997763 23333
Q ss_pred e-cccceeEEEECCCCCEEEEEeC-C---CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcC-
Q 012996 216 V-FPSVIDAIALDPAEHVFYAGSR-D---GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSE- 288 (451)
Q Consensus 216 ~-~~~~i~~~~~~~~~~~l~~~~~-d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~- 288 (451)
. ........ +++++..|+..+. + +.|..+|+.+... .....+..|...+. .|++ ++.|+....
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~ 346 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHSGSGYLFAEYMV 346 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEEETTEEEEEEEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEEECCEEEEEEEE
Confidence 3 33333343 6666666655443 3 5789999887531 11234445555554 8888 877776655
Q ss_pred CC--cEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCC----CCccccccCCC
Q 012996 289 DG--MVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFS----NPHTSSRRHGS 342 (451)
Q Consensus 289 dg--~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d----~~i~iw~~~~~ 342 (451)
+| .|++||+..+ ....+.. ..+.+..+.++|++..|+....+ +.+..|++.+.
T Consensus 347 ~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 347 DATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp TTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 44 6899998744 4455543 34567788888888877654433 67888887654
No 225
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.44 E-value=2.2e-12 Score=115.67 Aligned_cols=250 Identities=10% Similarity=-0.091 Sum_probs=165.9
Q ss_pred cEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec----------cCCCEEEEEcCCCcceeeeccc-------cCC
Q 012996 62 SILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG----------QSGDIYMWEVASGRLLKKWHAH-------YRA 124 (451)
Q Consensus 62 ~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~ 124 (451)
.|.++|..+.+......-.... .+.++||+++++++. .++.|.+||+.+++.+.++..+ ...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8889999998877554433333 899999999998875 3678999999999999888643 134
Q ss_pred eeEEEEccCCcEEEEeeC--CCcEEE--eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 125 VTCLVFSEDGSFLISGSE--DGCVRI--WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 125 v~~~~~~~~~~~l~s~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
...+.++|||++++++.. +..+.+ +|+.+ +..+.. .+. ..+.+++. ..+++.+.||.
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--------------v~~i~v-~~~---~~~~p~g~-~~~~~~~~dg~ 186 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--------------DQLTKS-ASC---FHIHPGAA-ATHYLGSCPAS 186 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--------------EEEEEC-SSC---CCCEEEET-TEEECCCCTTS
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--------------ceEEEC-CCc---eEEccCCC-eEEEEEcCCCC
Confidence 578999999999998864 457888 99844 111111 001 12334443 45567778899
Q ss_pred EEEEEcCC-----Cceee----eeec-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec----
Q 012996 201 CKVWSLLK-----GRLLR----NIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---- 266 (451)
Q Consensus 201 i~iwd~~~-----~~~~~----~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---- 266 (451)
+.+.|+.+ ++... .+.. ..+. . .+++..++..+. +.+.+.|+..... ..+..+.
T Consensus 187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~-------~v~~~~~~~~~ 254 (368)
T 1mda_H 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA-------TMKAAIDGNES 254 (368)
T ss_dssp CEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-------EEECCCCSSCT
T ss_pred EEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-------eEEEEEEeccc
Confidence 98899876 44331 1111 1222 3 555566555555 9999999865321 1111110
Q ss_pred ---cC---CcceeEEEEec-CCEEEEEcC---------CCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCce-eeecc
Q 012996 267 ---DH---SKAVTCLAYST-GDLLISGSE---------DGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLY-LNLGS 329 (451)
Q Consensus 267 ---~~---~~~v~~~~~~~-~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~s 329 (451)
.+ ......++++| ++.++.+.. ++.+.++|+.+++.+.++.... ...+++|+|||++ +++..
T Consensus 255 ~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~ 333 (368)
T 1mda_H 255 GRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEE
T ss_pred cccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEcc
Confidence 01 11122267999 777765532 2356699999999999987643 6899999999985 45555
Q ss_pred -CCCCccccccCCCCC
Q 012996 330 -FSNPHTSSRRHGSQL 344 (451)
Q Consensus 330 -~d~~i~iw~~~~~~~ 344 (451)
.++.|.++|..+.+.
T Consensus 334 ~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 334 AGTEVLDIYDAASDQD 349 (368)
T ss_dssp TTTTEEEEEESSSCEE
T ss_pred CCCCeEEEEECCCCcE
Confidence 589999999887553
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=6.6e-11 Score=104.66 Aligned_cols=222 Identities=9% Similarity=0.090 Sum_probs=143.1
Q ss_pred EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 119 (451)
.... |+|+|+.|+.++..++.|..|+.. +.......+...+..++++++|+++++...++.|.+|+.. ++......
T Consensus 48 egp~--~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~ 123 (305)
T 3dr2_A 48 EGPA--WWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVG 123 (305)
T ss_dssp EEEE--EEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEC
T ss_pred cCCe--EeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEe
Confidence 3444 999999554444444899999984 4444444456778999999999977776666789999975 55332221
Q ss_pred ---c-ccCCeeEEEEccCCcEEEE----eeC-------------CCcEEEeeCcchhhhhhhhcccccceecccCCcCce
Q 012996 120 ---A-HYRAVTCLVFSEDGSFLIS----GSE-------------DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI 178 (451)
Q Consensus 120 ---~-~~~~v~~~~~~~~~~~l~s----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 178 (451)
+ ....+.+++++++|+++++ |.. .+.|..||..++ .... +. .....
T Consensus 124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g-----------~~~~-~~-~~~~p 190 (305)
T 3dr2_A 124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS-----------PLQR-MA-DLDHP 190 (305)
T ss_dssp EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC-----------CCEE-EE-EESSE
T ss_pred ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC-----------cEEE-Ee-cCCCC
Confidence 1 1235678999999998886 432 245777776331 1111 11 33456
Q ss_pred eEEEEeecCCeeEEEEeeCC------CcEEEEEcCCCcee--eeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 179 TDIVIGYGGVSATIVSASED------RTCKVWSLLKGRLL--RNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
..++|++++ ..|+.+... +.|.+|++..+... ..+. .......++++++|+ |++++.+ .|.+|+..
T Consensus 191 ~gl~~spdg--~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~~ 266 (305)
T 3dr2_A 191 NGLAFSPDE--QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDSD 266 (305)
T ss_dssp EEEEECTTS--SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECTT
T ss_pred cceEEcCCC--CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECCC
Confidence 789999988 666666554 78999998765411 1111 234456789999998 5555544 49999875
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR 293 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~ 293 (451)
. ..+..+..+. .+.+++|++ ++.|+.++.++..+
T Consensus 267 g----------~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 G----------QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp S----------CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred C----------CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 4 2344444343 588999998 77777777665433
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.40 E-value=1.8e-10 Score=102.82 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=138.9
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeecc----c
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA----H 121 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~ 121 (451)
|+|+++.++.++..++.|..|+..++...... ....+.+++++|+|+++++. .+ .|.+||..+++....... .
T Consensus 56 ~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 56 FDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp EETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCT
T ss_pred EeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCC
Confidence 88876555444443489999999877654332 35689999999999877764 44 499999888775432221 1
Q ss_pred cCCeeEEEEccCCcEEEEeeCC----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEE-EEee
Q 012996 122 YRAVTCLVFSEDGSFLISGSED----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATI-VSAS 196 (451)
Q Consensus 122 ~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l-~s~~ 196 (451)
...+.+++++|+|+++++...+ +...+|.+.++ . ...+..+......++|++++ +.+ ++.+
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g---------~---~~~~~~~~~~~~~i~~s~dg--~~lyv~~~ 198 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---------K---VTKLFADISIPNSICFSPDG--TTGYFVDT 198 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---------E---EEEEEEEESSEEEEEECTTS--CEEEEEET
T ss_pred CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC---------c---EEEeeCCCcccCCeEEcCCC--CEEEEEEC
Confidence 2358899999999876655422 23344444221 0 11111222345788999887 555 4445
Q ss_pred CCCcEEEEEcC--CC-ce-----eeeee-cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc
Q 012996 197 EDRTCKVWSLL--KG-RL-----LRNIV-FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD 267 (451)
Q Consensus 197 ~d~~i~iwd~~--~~-~~-----~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 267 (451)
.++.|.+||+. ++ .. ...+. ....+..++++++|.+.++...++.|..||... ..+..+..
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g----------~~~~~i~~ 268 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG----------NHIARYEV 268 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTC----------CEEEEEEC
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCC----------CEEEEEEC
Confidence 67899999986 55 32 11111 234578899999998777776778899998743 23445555
Q ss_pred CCcceeEEEEe-c-CCEEEEEc
Q 012996 268 HSKAVTCLAYS-T-GDLLISGS 287 (451)
Q Consensus 268 ~~~~v~~~~~~-~-~~~l~s~~ 287 (451)
+...+++++|+ + ++.|+.++
T Consensus 269 ~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 269 PGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCcEEEEEecCCCCEEEEEe
Confidence 66679999998 7 66554444
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.37 E-value=2e-10 Score=112.46 Aligned_cols=243 Identities=9% Similarity=0.056 Sum_probs=156.3
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecC-CCCC-CceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSC-ASPP-HGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~-~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~ 77 (451)
.|++++ .|+.|..+|..+|+.+.++... .... ..+.... ...++..++..+. .+|.|+.||..+++.....
T Consensus 130 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p--~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 130 KVYVGA-WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAP--RVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEc-CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCc--EEECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 456667 7999999999999999888764 2111 1222212 2234444433332 1389999999999877654
Q ss_pred cCCC---------------------------------CeeEEEECCCCcEEEEeccCC-------------------CEE
Q 012996 78 LPAE---------------------------------PIKPIAANSHGTYIAGGGQSG-------------------DIY 105 (451)
Q Consensus 78 ~~~~---------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~ 105 (451)
.... ....++++|++..+++++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 3211 113578889888888877654 499
Q ss_pred EEEcCCCcceeeecc--cc-------CCeeEEEEccCC---cEEEEeeCCCcEEEeeCcchhhhhhhhccccc-------
Q 012996 106 MWEVASGRLLKKWHA--HY-------RAVTCLVFSEDG---SFLISGSEDGCVRIWSLLTVFEECESQRASHL------- 166 (451)
Q Consensus 106 iwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------- 166 (451)
.+|..+|+.+..++. |. .....+....+| ..++.++.+|.+.++|..++............
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999998877653 21 122233344467 68999999999999999876432211100000
Q ss_pred ---cee------------cccCCc--CceeEEEEeecCCeeEEEEeeC--------------------------------
Q 012996 167 ---YLH------------SFTGHT--LRITDIVIGYGGVSATIVSASE-------------------------------- 197 (451)
Q Consensus 167 ---~~~------------~~~~~~--~~i~~i~~~~~~~~~~l~s~~~-------------------------------- 197 (451)
++. .+.+.. ..-..++++|+. .++++...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT--GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT--TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCC--CEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 000 000000 000245666665 45555432
Q ss_pred -----------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 198 -----------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 198 -----------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.|.|..||+.+++.+..+.+...+....+...+..+++++.||.+++||..+++
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence 278999999999999888876666666667788899999999999999999874
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.36 E-value=3.3e-10 Score=105.69 Aligned_cols=290 Identities=11% Similarity=0.033 Sum_probs=197.9
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC------------------------------------CCceEEecceEe
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP------------------------------------PHGLACVGQRFL 47 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------------------------------~~~v~~~~~~~~ 47 (451)
.+.||+ ..|.++|+-+.+++.++.+.-+... ........ .|
T Consensus 17 ~f~s~g-~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~--~s 93 (595)
T 1fwx_A 17 GFWSSG-QSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVH--MS 93 (595)
T ss_dssp EEECCB-TTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEE--EE
T ss_pred EEeeCC-cCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccc--cC
Confidence 467777 9999999999999988766432110 01111122 44
Q ss_pred e-----ccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEE-C-CCCcEEEEec------------------c
Q 012996 48 A-----SSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAA-N-SHGTYIAGGG------------------Q 100 (451)
Q Consensus 48 ~-----~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~ 100 (451)
. ||+++.+...+++.|.+.|+.+.+... .......+..+++ + |++.++++++ .
T Consensus 94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 4 899999988877899999999988554 3334567889998 5 9999998884 3
Q ss_pred CCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC---------------cEEEeeCcchhhhhhhhcccc
Q 012996 101 SGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG---------------CVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 101 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---------------~i~vwd~~~~~~~~~~~~~~~ 165 (451)
++.+.++|..+.+...++.-.. ....++++|+|+++++.+.+. .|.+.|......
T Consensus 174 ~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--------- 243 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--------- 243 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH---------
T ss_pred CceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE---------
Confidence 4679999999988888776433 456788999999999888764 244444422110
Q ss_pred cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC--Cce-eeeeecccceeEEEECCCCCEEEEEe-CCCc
Q 012996 166 LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK--GRL-LRNIVFPSVIDAIALDPAEHVFYAGS-RDGS 241 (451)
Q Consensus 166 ~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 241 (451)
+.++|...++ +.|.+.|.++ ++. +..+..+....++.++|||+++++++ .+..
T Consensus 244 -----------------~v~~Gk~~~i------~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~ 300 (595)
T 1fwx_A 244 -----------------AIAAGDYQEL------NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT 300 (595)
T ss_dssp -----------------HHHHTCSEEE------TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB
T ss_pred -----------------eccCCCeeEE------CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe
Confidence 1122321222 5599999998 555 66777777889999999999888765 5779
Q ss_pred EEEEEccCCCCC---CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC----------CceEEEee
Q 012996 242 IYIAALNAESPS---TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT----------HNIVRMFR 307 (451)
Q Consensus 242 i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~ 307 (451)
|.++|+.+.... .-.......... .-......++|+| |...++...|+.|.+||+.+ .+.+.++.
T Consensus 301 VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid 379 (595)
T 1fwx_A 301 VTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD 379 (595)
T ss_dssp EEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE
T ss_pred EEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee
Confidence 999999853100 000000112222 2235678899999 85555667899999999877 56777887
Q ss_pred cCCCCe-----eEEEEEecCceeeeccC
Q 012996 308 LAKGPV-----NNILVVRRPLYLNLGSF 330 (451)
Q Consensus 308 ~~~~~v-----~~l~~s~~~~~l~~~s~ 330 (451)
.|-.+- .++.++|||++|+++..
T Consensus 380 V~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 380 VHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp CSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cccccccceeccceEeCCCCCEEEEcCC
Confidence 765432 23345799999988653
No 230
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.34 E-value=1.4e-09 Score=99.24 Aligned_cols=268 Identities=9% Similarity=0.034 Sum_probs=166.3
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecC----------CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLP----------AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 118 (451)
.+..+.+++.+ +.|..+|..+++....... ...+.+. ...++..+++++.++.|..+|..+|+.+...
T Consensus 52 ~~~~v~~~~~~-g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRA-GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTT-SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCC-CeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 34555566655 8999999998887655433 1222222 2224566777888999999999999988776
Q ss_pred ccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
............. +..++.++.++.|..+|..++.......... .......... .... + ..++.++.+
T Consensus 130 ~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~----~~~~-~---~~v~~g~~~ 197 (376)
T 3q7m_A 130 KVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDM--PSLSLRGESA----PTTA-F---GAAVVGGDN 197 (376)
T ss_dssp ECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-------CCCCC----CEEE-T---TEEEECCTT
T ss_pred eCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC--CceeecCCCC----cEEE-C---CEEEEEcCC
Confidence 5443222222232 4467888889999999986643211110000 0000000111 1111 2 467888889
Q ss_pred CcEEEEEcCCCceeeeeecccce-----e---EEEECC--CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccC
Q 012996 199 RTCKVWSLLKGRLLRNIVFPSVI-----D---AIALDP--AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDH 268 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~~~i-----~---~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 268 (451)
+.+..+|..+++.+.......+. . .+...| .+..+++++.++.++.+|..++.. +....
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~---------~w~~~-- 266 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI---------MWKRE-- 266 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------EEEEC--
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------Eeecc--
Confidence 99999999999988776633211 0 011222 357788888999999999988742 21221
Q ss_pred CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccCCCCC
Q 012996 269 SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 269 ~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
......+... +..++.++.+|.|..+|..+++.+..... ....+..... .+..|+.++.+|.+..++..+++.
T Consensus 267 ~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 267 LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcE
Confidence 1223334333 77888888899999999999998877652 2222333333 356788888899999999776654
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.33 E-value=3.3e-09 Score=95.55 Aligned_cols=219 Identities=15% Similarity=0.176 Sum_probs=146.1
Q ss_pred CCCcEEEE-eccCCCEEEEEcCCC----cceeeec-------cccCCeeEEEEccCCcEEEEeeCC------CcEEEeeC
Q 012996 90 SHGTYIAG-GGQSGDIYMWEVASG----RLLKKWH-------AHYRAVTCLVFSEDGSFLISGSED------GCVRIWSL 151 (451)
Q Consensus 90 ~~~~~l~~-~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~d------g~i~vwd~ 151 (451)
+++++|++ |..++.|+|+|+.+. +...++. ........+..+|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887765 556788999999755 4455552 111245667888999 77766655 78999998
Q ss_pred cchhhhhhhhcccccceecccC--Cc-CceeEEEEeecCCeeEEEEee-------------------CCCcEEEEEcCCC
Q 012996 152 LTVFEECESQRASHLYLHSFTG--HT-LRITDIVIGYGGVSATIVSAS-------------------EDRTCKVWSLLKG 209 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~~i~~~~~~~~~~l~s~~-------------------~d~~i~iwd~~~~ 209 (451)
.+ ...+..+.. .. ..-..+.|+|++ +.+++.. .+.+|.+||+.++
T Consensus 172 ~T-----------~~v~~~~~~~~~~~~~~Yd~~~~p~~--~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 172 YS-----------FEPLGKWEIDRGDQYLAYDFWWNLPN--EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp TT-----------CCEEEECCSBCTTCCCCCCEEEETTT--TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred CC-----------CeEEEEEccCCCCccccceEEECCCC--CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 65 233333331 11 223457778887 6777775 3689999999999
Q ss_pred ceeeeeecc---cceeEEEE--CCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeee--cc---------
Q 012996 210 RLLRNIVFP---SVIDAIAL--DPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSL--SD--------- 267 (451)
Q Consensus 210 ~~~~~~~~~---~~i~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~--------- 267 (451)
+.+.++... .....+.| +|+++++++++. ++.|.+|....+. +.....+ ..
T Consensus 239 k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vIdi~~~~v~~~lp~ 311 (462)
T 2ece_A 239 KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIEIPAEPLEGNLPE 311 (462)
T ss_dssp EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEEECCEECCSSCCG
T ss_pred cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEeCCCccccccccc
Confidence 888888754 33445545 999999998874 5688877665421 1111110 00
Q ss_pred -------CCcceeEEEEec-CCEEEEEcC-CCcEEEEeCCC---CceEEEeecCC--------------CCeeEEEEEec
Q 012996 268 -------HSKAVTCLAYST-GDLLISGSE-DGMVRVWDPIT---HNIVRMFRLAK--------------GPVNNILVVRR 321 (451)
Q Consensus 268 -------~~~~v~~~~~~~-~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~--------------~~v~~l~~s~~ 321 (451)
-......|.+|+ +++|.++.. .+.|.+||+.. .+.+..+.... +.-..++++||
T Consensus 312 ~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 312 ILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred cccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 024578899999 888877765 67899999853 35565554321 12588999999
Q ss_pred Cceeeecc
Q 012996 322 PLYLNLGS 329 (451)
Q Consensus 322 ~~~l~~~s 329 (451)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99998876
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.32 E-value=6.7e-13 Score=120.56 Aligned_cols=202 Identities=11% Similarity=0.079 Sum_probs=113.7
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceec
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
++..+++++.||.|+.||..+|+.+..+.. +.+.+..+..++..+++++.||.|..||..++... ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~-----------w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGL-----------TK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCS-----------EE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCcee-----------ee
Confidence 577899999999999999999999988875 55666566667778888889999999999664221 11
Q ss_pred ccCCcC-cee-EEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEcc
Q 012996 171 FTGHTL-RIT-DIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALN 248 (451)
Q Consensus 171 ~~~~~~-~i~-~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 248 (451)
+..+.. .+. +..+. .+ ..+++++.++.++.||..+|+.+..+..... ..++|++..+++++.++.|+.||..
T Consensus 75 ~~~~~~~~~~~sp~~~-~~--~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 75 LPFTIPELVQASPCRS-SD--GILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp CSCCHHHHHTTCSCC--------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSS
T ss_pred eeccCccccccCceEe-cC--CEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECC
Confidence 111100 000 00111 12 5778888999999999999998877764432 3456788999999999999999998
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE-EEEEecCc
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYST----GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN-ILVVRRPL 323 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-l~~s~~~~ 323 (451)
++.... .+..+ ......+.+ +..+++++.||.|..||..+++.+.++.. .+++.. ..++++|.
T Consensus 149 tG~~~W---------~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 149 TRELRW---------NATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp SSSCCC---------EEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred CCCEEE---------eEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 875322 11110 011122222 16788889999999999999999888774 344443 34445553
No 233
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=2.5e-14 Score=130.03 Aligned_cols=254 Identities=11% Similarity=0.079 Sum_probs=141.3
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC-Cee-
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR-AVT- 126 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~- 126 (451)
++..+++++.+ |.|..||..+++....... +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~d-g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLD-GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETT-SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCC-CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 46677777777 9999999999998766555 6666666677888888888999999999999988766643321 110
Q ss_pred EEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEc
Q 012996 127 CLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSL 206 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~ 206 (451)
+..+. ++..+++++.|+.|..||..++.. +..+..+. ...++|.+ ..+++++.++.|+.||.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~-----------~w~~~~~~----~~~~~p~~--~~v~~~~~dg~v~a~d~ 147 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEK-----------QQTLSSAF----ADSLSPST--SLLYLGRTEYTITMYDT 147 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------------------EEEEEEEEEEECCCS
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcE-----------EEEecCCC----cccccccC--CEEEEEecCCEEEEEEC
Confidence 11111 345688888999999999976432 22222221 12334444 78889999999999999
Q ss_pred CCCceeeeeecccceeEEEECCCC---CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeE-EEEec-CC
Q 012996 207 LKGRLLRNIVFPSVIDAIALDPAE---HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTC-LAYST-GD 281 (451)
Q Consensus 207 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~ 281 (451)
.+++.+..+.... ....+++++. ..+++++.+|.++.||..++.. +-... ...++.. ..+++ +.
T Consensus 148 ~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~---------~W~~~-~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 148 KTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV---------LWIQN-YASPVVAFYVWQREGL 216 (369)
T ss_dssp SSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE---------EEEEE-CSSCEEEEEECTTSSC
T ss_pred CCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcE---------EEEec-CCCceEEEEEecCCce
Confidence 9998877665322 2233344432 5678889999999999988742 22222 2334433 23333 22
Q ss_pred EE----EEEcCCCcEEEEeCCCCc----eEEEeecCCCCeeEEEEEe--cCceeeeccCCCCccccccC
Q 012996 282 LL----ISGSEDGMVRVWDPITHN----IVRMFRLAKGPVNNILVVR--RPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 282 ~l----~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~l~~s~--~~~~l~~~s~d~~i~iw~~~ 340 (451)
.. +.+ ++.+..+|..+|+ .+..+... +.+. +| .+..|+.++.||.+...+..
T Consensus 217 ~~v~~~~~~--~~~l~~ld~~tG~~~~~~~W~~~~~-~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 217 RKVMHINVA--VETLRYLTFMSGEVGRITKWKYPFP-KETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEECCEEEE--HHHHHHHHHHHHHHHHHHTSCCCCC-CHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred Eeccceeec--ccceeeeehhcCCcccceeeeeccC-cccc----ccccccceEEEecccCCEEecCcc
Confidence 11 112 3445666766665 44333321 1121 22 34567777888888888765
No 234
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.30 E-value=4.2e-09 Score=103.06 Aligned_cols=301 Identities=14% Similarity=0.130 Sum_probs=180.3
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCc------eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHG------LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL 78 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~ 78 (451)
|++++ .++.|..+|..+|+.+.++......... ...-. ....+..+++++.+ +.|..+|..+++......
T Consensus 69 vyv~~-~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 69 IYTSM-SWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG--VALWGDKVYVGTLD-GRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEE-GGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC--CEEEBTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred EEEEC-CCCeEEEEECCCChhceEECCCCCccccccccccCCccc--eEEECCEEEEEcCC-CEEEEEECCCCCEeeeec
Confidence 44555 5789999999999999887643221100 00001 12234556666666 999999999998876543
Q ss_pred CCC--CeeEEEECC--CCcEEEEecc------CCCEEEEEcCCCcceeeecccc--------------------------
Q 012996 79 PAE--PIKPIAANS--HGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHY-------------------------- 122 (451)
Q Consensus 79 ~~~--~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~-------------------------- 122 (451)
... ....+..+| .+..++++.. +|.|+.+|..+|+.+..+....
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 211 011111122 1334555543 5889999999999887764210
Q ss_pred -----CCeeEEEEccCCcEEEEeeCCCc-------------------EEEeeCcchhhhhhhhcccccceecccCCc---
Q 012996 123 -----RAVTCLVFSEDGSFLISGSEDGC-------------------VRIWSLLTVFEECESQRASHLYLHSFTGHT--- 175 (451)
Q Consensus 123 -----~~v~~~~~~~~~~~l~s~~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--- 175 (451)
.....+++.|+...++.++.++. |..+|..++..... .....|.
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~---------~~~~~~~~wd 295 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH---------YQVTPGDSWD 295 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE---------EESSTTCCSC
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE---------eecCCCcccc
Confidence 01124678887788888877663 88888866432111 1111121
Q ss_pred ----CceeEEEEeecCC-eeEEEEeeCCCcEEEEEcCCCceeeeeeccc-------------c-----------------
Q 012996 176 ----LRITDIVIGYGGV-SATIVSASEDRTCKVWSLLKGRLLRNIVFPS-------------V----------------- 220 (451)
Q Consensus 176 ----~~i~~i~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------~----------------- 220 (451)
.+.....+..++. ...++.++.+|.++++|..+|+.+..+.... +
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 2222222333442 1368999999999999999999885443111 0
Q ss_pred -------eeEEEECCCCCEEEEEe------------------------------------CCCcEEEEEccCCCCCCCCC
Q 012996 221 -------IDAIALDPAEHVFYAGS------------------------------------RDGSIYIAALNAESPSTSSY 257 (451)
Q Consensus 221 -------i~~~~~~~~~~~l~~~~------------------------------------~dg~i~i~d~~~~~~~~~~~ 257 (451)
-..++++|+...+++.. .+|.|..||+.+++
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~------ 449 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK------ 449 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE------
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc------
Confidence 01257777777766522 23678888888764
Q ss_pred CceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEEEEecCc-eeeec
Q 012996 258 GMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNILVVRRPL-YLNLG 328 (451)
Q Consensus 258 ~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~~s~~~~-~l~~~ 328 (451)
.+-....+ .+.....+.. +.+++.++.||.|+.||..+++.+..++...+.. .-+.+..+|+ |++.+
T Consensus 450 ---~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~ 519 (668)
T 1kv9_A 450 ---AAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIM 519 (668)
T ss_dssp ---EEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ---EEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEE
Confidence 22222222 2333333444 8899999999999999999999999988654321 2344556665 44443
No 235
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=7.4e-10 Score=108.73 Aligned_cols=243 Identities=9% Similarity=0.120 Sum_probs=153.8
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecC-C-CCCCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSC-A-SPPHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~ 77 (451)
.|++++ .|+.|..+|..+|+.+..+... . .....+.+.. ...++..++..+. .+|.|..||..+++.....
T Consensus 123 ~v~v~~-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP--~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 123 KVYVGV-LDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP--RVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEc-cCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc--EEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 466677 7999999999999999887653 1 1111222211 2234544443322 1389999999999877554
Q ss_pred cC--CC------------------------------CeeEEEECCCCcEEEEeccCCC-------------------EEE
Q 012996 78 LP--AE------------------------------PIKPIAANSHGTYIAGGGQSGD-------------------IYM 106 (451)
Q Consensus 78 ~~--~~------------------------------~v~~~~~~~~~~~l~~~~~dg~-------------------i~i 106 (451)
.. .. ....++++|++..+++++.++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 21 00 1125788898888988887753 999
Q ss_pred EEcCCCcceeeecc--cc-------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhcccccceec----
Q 012996 107 WEVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHS---- 170 (451)
Q Consensus 107 wd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---- 170 (451)
+|..+|+.+..++. |. .++.......+|+ .++.++.+|.+.++|..++................
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 99999999887753 22 1222222223565 78899999999999998764421110000000000
Q ss_pred -------------ccCCcC-----------ceeEEEEeecCCeeEEEEeeC-----------------------------
Q 012996 171 -------------FTGHTL-----------RITDIVIGYGGVSATIVSASE----------------------------- 197 (451)
Q Consensus 171 -------------~~~~~~-----------~i~~i~~~~~~~~~~l~s~~~----------------------------- 197 (451)
+..... .-..++++|.. .++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDT--GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCC--CEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 000000 01125566654 44444321
Q ss_pred ----------------CCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 198 ----------------DRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 198 ----------------d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
+|.|..||+.+++.+..+.+......-.+...+.++++|+.||.++.||.++++
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 478999999999999888866655555666678899999999999999999984
No 236
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.24 E-value=6.4e-09 Score=99.67 Aligned_cols=296 Identities=14% Similarity=0.091 Sum_probs=173.3
Q ss_pred EeecCCC-CCCeEEEEC-ccCceeeeeecCCCCC-Cc-----eEEecceEeeccCcccCCCCCCccEEEEECCCCceeee
Q 012996 5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK 76 (451)
Q Consensus 5 l~s~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~ 76 (451)
|+.++ . ++.|.-+|. .+|+.+.++....... .. ...-. ....+..+++++.+ +.|..+|..+++....
T Consensus 65 vyv~~-~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~d-g~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHS-AFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRG--LAYGAGQIVKKQAN-GHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCC--CEEETTEEEEECTT-SEEEEEETTTCCEEEE
T ss_pred EEEEe-CCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccc--cEEECCEEEEEeCC-CEEEEEECCCCCEEEE
Confidence 44455 5 789999999 8999988775432110 00 00001 11234556666666 9999999999988765
Q ss_pred ecCCC-----CeeE-EEECCCCcEEEEecc------CCCEEEEEcCCCcceeeeccccCC--------------------
Q 012996 77 SLPAE-----PIKP-IAANSHGTYIAGGGQ------SGDIYMWEVASGRLLKKWHAHYRA-------------------- 124 (451)
Q Consensus 77 ~~~~~-----~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-------------------- 124 (451)
..... .+.+ ... .++ .+++++. +|.|+.+|..+|+.+..+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred ecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 43222 1211 111 134 4555544 789999999999988766422110
Q ss_pred -----------------e-eEEEEccCCcEEEEeeCC----------------CcEEEeeCcchhhhhhhhcccccceec
Q 012996 125 -----------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRASHLYLHS 170 (451)
Q Consensus 125 -----------------v-~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~~~~ 170 (451)
+ ..+++.++...++.+..+ +.|..+|..++.... ...
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W---------~~~ 289 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKW---------GYQ 289 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEE---------EEE
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEE---------Eec
Confidence 0 135666655566655432 258888886643211 111
Q ss_pred ccCC--------cCceeEEEEeecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeeccc--------------ce------
Q 012996 171 FTGH--------TLRITDIVIGYGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------VI------ 221 (451)
Q Consensus 171 ~~~~--------~~~i~~i~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~i------ 221 (451)
...| ..++. +....++.. ..++.++.+|.++++|..+++.+..+.... ++
T Consensus 290 ~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~ 368 (571)
T 2ad6_A 290 KTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFA 368 (571)
T ss_dssp SSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGC
T ss_pred CCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccC
Confidence 1111 12221 112234410 256778899999999999999887665321 11
Q ss_pred --------------------eEEEECCCCCEEEEEeC-------------------------------------CCcEEE
Q 012996 222 --------------------DAIALDPAEHVFYAGSR-------------------------------------DGSIYI 244 (451)
Q Consensus 222 --------------------~~~~~~~~~~~l~~~~~-------------------------------------dg~i~i 244 (451)
..++++|+...+++... +|.|+.
T Consensus 369 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a 448 (571)
T 2ad6_A 369 TRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRA 448 (571)
T ss_dssp CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEE
T ss_pred CCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEE
Confidence 23577888788877643 467888
Q ss_pred EEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-eeEEEEEecC
Q 012996 245 AALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-VNNILVVRRP 322 (451)
Q Consensus 245 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~l~~s~~~ 322 (451)
||..+++. +-.... ...+.+..+.. +..++.++.||.|+.||..+++.+.++...... -.-+.+..+|
T Consensus 449 ~D~~tG~~---------~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G 518 (571)
T 2ad6_A 449 FDLTTGKA---------KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKG 518 (571)
T ss_dssp ECTTTCCE---------EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred EECCCCCE---------EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECC
Confidence 88877642 222211 12222222233 778888999999999999999999988854332 1224466777
Q ss_pred ceee
Q 012996 323 LYLN 326 (451)
Q Consensus 323 ~~l~ 326 (451)
+.++
T Consensus 519 ~~yv 522 (571)
T 2ad6_A 519 KQYI 522 (571)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6443
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.24 E-value=1.7e-08 Score=87.13 Aligned_cols=240 Identities=10% Similarity=-0.005 Sum_probs=147.5
Q ss_pred ccEEEEECCCCcee------eeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC
Q 012996 61 GSILYWSWSKPQVE------VKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED 133 (451)
Q Consensus 61 g~i~vw~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 133 (451)
+.|+.++++..... ....+...+..++|++++..| ++-..++.|..++.........+.........++++++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~ 89 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHL 89 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETT
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEec
Confidence 56777777654321 111123457899999965555 45455788999998765443333333356789999996
Q ss_pred CcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--CCcEEEEEcCCCc
Q 012996 134 GSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--DRTCKVWSLLKGR 210 (451)
Q Consensus 134 ~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~ 210 (451)
+..|+ +-...+.|.++++... ....+ ..........+++++++. .++++... .+.|..+++.. .
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~g~---------~~~~~--~~~~~~~P~~i~vd~~~g-~lyv~~~~~~~~~I~~~~~dg-~ 156 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMDGT---------QRRVL--FDTGLVNPRGIVTDPVRG-NLYWTDWNRDNPKIETSHMDG-T 156 (267)
T ss_dssp TTEEEEEETTTTEEEEEETTSC---------SCEEE--ECSSCSSEEEEEEETTTT-EEEEEECCSSSCEEEEEETTS-C
T ss_pred CCeEEEEECCCCEEEEEEcCCC---------CEEEE--EECCCCCccEEEEeeCCC-EEEEEECCCCCcEEEEEecCC-C
Confidence 55444 4455678999988431 11111 111123567899998541 34444333 46888888753 3
Q ss_pred eeeeee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996 211 LLRNIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287 (451)
Q Consensus 211 ~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~ 287 (451)
....+. .......++++|++..|+++. ..+.|..+|..... ....... ......++...+.++++..
T Consensus 157 ~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~~-~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 157 NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEG-LQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEEC-CCSEEEEEEETTEEEEEET
T ss_pred CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---------eEEEecC-CCCceEEEEeCCEEEEEEC
Confidence 323222 224578899999877766654 55789999987532 1111222 2334566655344555555
Q ss_pred CCCcEEEEeCCCCceEEEeecCCC-CeeEEEEEecCc
Q 012996 288 EDGMVRVWDPITHNIVRMFRLAKG-PVNNILVVRRPL 323 (451)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~~~-~v~~l~~s~~~~ 323 (451)
..+.|..+|..+++.+.++..... ....+++.|++.
T Consensus 227 ~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 227 KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 678999999999999998875432 478888888764
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.22 E-value=1.2e-08 Score=91.96 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=160.0
Q ss_pred CCeEEEECcc-----CceeeeeecCCC----CCCce----EEecceEe--eccCcccCCCCCCccEEEEECCCC----ce
Q 012996 13 TGIGCWDLES-----GAEQLRYKSCAS----PPHGL----ACVGQRFL--ASSQLREQPSASSGSILYWSWSKP----QV 73 (451)
Q Consensus 13 g~i~vwd~~~-----~~~~~~~~~~~~----~~~~v----~~~~~~~~--~~~~~l~~~~~d~g~i~vw~~~~~----~~ 73 (451)
-.|.+-|+.. ++.+..+..... |..+- .|++..++ +++++|++.+..++.|.|+|+.+. +.
T Consensus 43 d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 43 DFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI 122 (462)
T ss_dssp CEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred CeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence 3588888886 777766543221 11110 11111246 888998888887799999998644 22
Q ss_pred eeeec--------CCCCeeEEEECCCCcEEEEeccC------CCEEEEEcCCCcceeeeccccC---CeeEEEEccCCcE
Q 012996 74 EVKSL--------PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLKKWHAHYR---AVTCLVFSEDGSF 136 (451)
Q Consensus 74 ~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~ 136 (451)
..... .......+.++|+| +++++..+ |.|.++|..+++.+.++..... .-..+-|+|+++.
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE
Confidence 21110 11245667889999 66665444 7899999999999988863322 2345888999998
Q ss_pred EEEee-------------------CCCcEEEeeCcchhhhhhhhcccccceecccC--CcCceeEEEE--eecCCeeEEE
Q 012996 137 LISGS-------------------EDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HTLRITDIVI--GYGGVSATIV 193 (451)
Q Consensus 137 l~s~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~i~~--~~~~~~~~l~ 193 (451)
+++.. ...+|.+||+.+ ...+.++.. .......+.| +|++ ++++
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-----------~k~~~tI~vg~~g~~P~~i~f~~~Pdg--~~aY 268 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-----------RKRIHSLTLGEENRMALELRPLHDPTK--LMGF 268 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-----------TEEEEEEESCTTEEEEEEEEECSSTTC--CEEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCC-----------CcEeeEEecCCCCCccceeEeeECCCC--CEEE
Confidence 88884 367999999954 223333332 1223445656 6666 6666
Q ss_pred Eee------CCCcEEEEEcCCCce--eeee--ec-----------------ccceeEEEECCCCCEEEEEeC-CCcEEEE
Q 012996 194 SAS------EDRTCKVWSLLKGRL--LRNI--VF-----------------PSVIDAIALDPAEHVFYAGSR-DGSIYIA 245 (451)
Q Consensus 194 s~~------~d~~i~iwd~~~~~~--~~~~--~~-----------------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~ 245 (451)
+++ .+++|.+|....+.. ...+ .. ......+.++|++++|+++.. .+.|.+|
T Consensus 269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~Vavf 348 (462)
T 2ece_A 269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQY 348 (462)
T ss_dssp EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEE
T ss_pred EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEE
Confidence 555 567887766544321 1111 00 245788999999999999875 5789999
Q ss_pred EccCCCCCCCCCCceeeeeeccC--------------CcceeEEEEec-CCEEEEEc
Q 012996 246 ALNAESPSTSSYGMHIIGSLSDH--------------SKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~-~~~l~s~~ 287 (451)
|+..... .+.+..+... ......+.++| |++|+++.
T Consensus 349 dV~d~~~------~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 349 DISNPFK------PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECSSTTS------CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EecCCCC------cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9864321 1333333221 11367899999 98888887
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.21 E-value=4.5e-10 Score=100.47 Aligned_cols=252 Identities=14% Similarity=0.054 Sum_probs=156.9
Q ss_pred cCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEE
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCL 128 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 128 (451)
+..+.+++.+ +.|..|| .+++...... +...+.++...+++. +.+++.+ |..+|. +++.+..+..........
T Consensus 30 ~g~l~v~t~~-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~ 103 (330)
T 3hxj_A 30 NGTIYLGSSN-KNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF 103 (330)
T ss_dssp TSCEECSSTT-TTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred CCeEEEEcCC-CEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence 3345555555 8899999 7766544332 233456777777776 4444544 888885 676665554333333333
Q ss_pred EEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 129 VFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 129 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
.+. +..+..++.++.|..+|.. + ........+...+.++...+++ .++.++.++.|..+|..
T Consensus 104 ~~~--~~~l~v~t~~~~l~~~d~~-g-----------~~~~~~~~~~~~~~~~~~~~~g---~l~vgt~~~~l~~~d~~- 165 (330)
T 3hxj_A 104 TIF--EDILYVTSMDGHLYAINTD-G-----------TEKWRFKTKKAIYATPIVSEDG---TIYVGSNDNYLYAINPD- 165 (330)
T ss_dssp EEE--TTEEEEECTTSEEEEECTT-S-----------CEEEEEECSSCCCSCCEECTTS---CEEEECTTSEEEEECTT-
T ss_pred eEE--CCEEEEEecCCEEEEEcCC-C-----------CEEEEEcCCCceeeeeEEcCCC---EEEEEcCCCEEEEECCC-
Confidence 343 4457778888999999974 1 1122222233344555554444 46778888999999998
Q ss_pred Cceeeeeec-ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEc
Q 012996 209 GRLLRNIVF-PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGS 287 (451)
Q Consensus 209 ~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~ 287 (451)
++....+.. ...+.++...+++.++ +++ +.+..+| .++. ...........+.++...+...|..++
T Consensus 166 g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~---------~~~~~~~~~~~~~~~~~~~~g~l~v~t 232 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGT---------EKWNFYAGYWTVTRPAISEDGTIYVTS 232 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSC---------EEEEECCSSCCCSCCEECTTSCEEEEE
T ss_pred CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCc---------EEEEEccCCcceeceEECCCCeEEEEc
Confidence 777766653 3456677777777654 444 8899999 4432 233333344667888887744566677
Q ss_pred CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 288 EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.++.|..+| .+++.+..+......+..+.+.+++ .|..++.+|.+..++..
T Consensus 233 ~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 233 LDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINPD 283 (330)
T ss_dssp TTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECTT
T ss_pred CCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECCC
Confidence 788888888 4677777766555555666666565 56667778778888754
No 240
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.19 E-value=1.1e-09 Score=98.42 Aligned_cols=247 Identities=9% Similarity=0.047 Sum_probs=147.7
Q ss_pred ceEEecceEeeccCcccCCCC-CCccEEEEECCCCceeee-------ecCCCCeeEEEECCCCcEEEEecc-----CCCE
Q 012996 38 GLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVK-------SLPAEPIKPIAANSHGTYIAGGGQ-----SGDI 104 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~-d~g~i~vw~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 104 (451)
....++ ++++|+.+++... +++.+.||.+.++..... ..+...+..++++++++++++-.. ++.|
T Consensus 18 ~p~~va--~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 18 APGNIT--LTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp CEEEEE--ECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CcceEE--ECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 455556 8899988877532 214355555544432211 113357899999999987776543 5789
Q ss_pred EEEEcCCCcceeeecc------ccCCeeEEEEccCC-cEEEEee---CCCcEEEeeCcchhhhhhhhcc-c--c-cceec
Q 012996 105 YMWEVASGRLLKKWHA------HYRAVTCLVFSEDG-SFLISGS---EDGCVRIWSLLTVFEECESQRA-S--H-LYLHS 170 (451)
Q Consensus 105 ~iwd~~~~~~~~~~~~------~~~~v~~~~~~~~~-~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~-~--~-~~~~~ 170 (451)
.+||+.+++.+..+.. +...+..+++++++ ..+++.. .++.|.+||+.++......... . . .....
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999999987766542 22456899999854 4445544 5789999998653211100000 0 0 00000
Q ss_pred ccC--------------CcCceeEEEEeecCCeeEEEEeeCCC-cEEEEEcC---CCc-----e---eeeeecccceeEE
Q 012996 171 FTG--------------HTLRITDIVIGYGGVSATIVSASEDR-TCKVWSLL---KGR-----L---LRNIVFPSVIDAI 224 (451)
Q Consensus 171 ~~~--------------~~~~i~~i~~~~~~~~~~l~s~~~d~-~i~iwd~~---~~~-----~---~~~~~~~~~i~~~ 224 (451)
..+ ....+..+++++++ +.|+.+..++ .+..++.. .+. . +...........+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg--~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi 253 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN--EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI 253 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTS--CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCC--CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence 000 01246789999987 6777776655 45555432 111 0 1111223356779
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEe
Q 012996 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWD 296 (451)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd 296 (451)
+++++|.++++...++.|.+||..++. ...+... .+...+.++++.+ +.++++.+..+.+.+|.
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~-------~~~~~~~-~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRA-------YKLLVTD-EKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTE-------EEEEEEC-GGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCC-------EEEEEEC-CceecCCeeEECCCCcEEEEeCccccccccc
Confidence 999999998888889999999983331 1112111 1345688999998 77777777665554444
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.17 E-value=5.7e-08 Score=93.03 Aligned_cols=299 Identities=13% Similarity=0.114 Sum_probs=173.6
Q ss_pred EeecCCC-CCCeEEEEC-ccCceeeeeecCCCCC-Cc-----e--EEecceEeeccCc----ccCCCCCCccEEEEECCC
Q 012996 5 IASSSVA-DTGIGCWDL-ESGAEQLRYKSCASPP-HG-----L--ACVGQRFLASSQL----REQPSASSGSILYWSWSK 70 (451)
Q Consensus 5 l~s~~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~-~~-----v--~~~~~~~~~~~~~----l~~~~~d~g~i~vw~~~~ 70 (451)
|++++ . ++.|.-+|. .+|+.+.++....... .. . ..++ +.|.+.. +++++.+ +.|.-+|..+
T Consensus 65 vyv~~-~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~a--v~p~~g~~~~rV~v~t~d-g~l~AlDa~T 140 (599)
T 1w6s_A 65 MYIHT-SFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLA--YWPGDGKTPALILKTQLD-GNVAALNAET 140 (599)
T ss_dssp EEEEC-STTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCE--EECCCSSSCCEEEEECTT-SEEEEEETTT
T ss_pred EEEEe-CCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceE--EEecCCcceeEEEEEcCC-CEEEEEECCC
Confidence 44555 5 789999999 8999998876433210 00 0 1122 4434444 6666666 9999999999
Q ss_pred CceeeeecCCC-----CeeE-EEECCCCcEEEEec------cCCCEEEEEcCCCcceeeeccccCC--------------
Q 012996 71 PQVEVKSLPAE-----PIKP-IAANSHGTYIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA-------------- 124 (451)
Q Consensus 71 ~~~~~~~~~~~-----~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-------------- 124 (451)
++......... .+.+ -.+ .++ .+++++ .+|.|+-+|..+|+.+..+......
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 98876643222 1221 111 134 455554 3789999999999988766422110
Q ss_pred -----------------------e-eEEEEccCCcEEEEeeCC----------------CcEEEeeCcchhhhhhhhccc
Q 012996 125 -----------------------V-TCLVFSEDGSFLISGSED----------------GCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 125 -----------------------v-~~~~~~~~~~~l~s~~~d----------------g~i~vwd~~~~~~~~~~~~~~ 164 (451)
+ ..+++.++...++.+..+ +.|..+|..++...
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~------- 291 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK------- 291 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-------
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-------
Confidence 1 134566666677766655 36888888663221
Q ss_pred ccceecccCC--------cCceeEEEEe-ecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeeccc--------------c
Q 012996 165 HLYLHSFTGH--------TLRITDIVIG-YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPS--------------V 220 (451)
Q Consensus 165 ~~~~~~~~~~--------~~~i~~i~~~-~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------------~ 220 (451)
.......| ..++. +... .++.. ..++.++.+|.++++|..+++.+....... +
T Consensus 292 --W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 292 --FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp --EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred --eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 11111212 12221 1111 12211 467778899999999999999887655211 0
Q ss_pred e--------------------------eEEEECCCCCEEEEEe-------------------------------------
Q 012996 221 I--------------------------DAIALDPAEHVFYAGS------------------------------------- 237 (451)
Q Consensus 221 i--------------------------~~~~~~~~~~~l~~~~------------------------------------- 237 (451)
+ ..++++|+..++++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 1 2456777766666543
Q ss_pred --CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCC-e
Q 012996 238 --RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGP-V 313 (451)
Q Consensus 238 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v 313 (451)
..|.|..||+.+++. +-... +..++..-.... +.+++.++.||.++.||..+|+.+.+++...+. .
T Consensus 449 ~~~~G~l~A~D~~tG~~---------~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~ 518 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDY---------KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (599)
T ss_dssp TBCCEEEEEECTTTCCE---------EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCCcCeEEEEECCCCCE---------EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEe
Confidence 235666666666532 11111 111111111222 778888999999999999999999998765432 2
Q ss_pred eEEEEEecCc-eeeecc
Q 012996 314 NNILVVRRPL-YLNLGS 329 (451)
Q Consensus 314 ~~l~~s~~~~-~l~~~s 329 (451)
.-+.+..+|+ |+++.+
T Consensus 519 ~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 519 YPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred ccEEEEeCCEEEEEEEc
Confidence 3356667886 454443
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.16 E-value=2.4e-07 Score=93.17 Aligned_cols=300 Identities=10% Similarity=0.140 Sum_probs=186.4
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--------CCCC
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--------PAEP 82 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--------~~~~ 82 (451)
.++.|..||..+++...... ......|.++. ..+++.+.+.+.. +.+..||..+........ ....
T Consensus 191 ~~~Gl~~~~~~~~~~~~~~~--~~~~~~i~~i~--~d~~g~lwigt~~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 191 STDGLYTYSITQKTFEKVIP--ILGTKQIQAIL--QQSPTRIWVATEG--AGLFLINPKTKEIKNYLHSPSNPKSISSNY 264 (795)
T ss_dssp SSSCEEEEETTTCCEEECC------CCCEEEEE--EEETTEEEEEEBS--SCEEEEETTTTEEEEECCCTTCTTSCSCSB
T ss_pred CCCCEEEEeCCCCeEEEecC--CCCCCeeEEEE--EcCCCCEEEEECC--CCeEEEeCCCCeEEEeecCCCCccccCCCe
Confidence 34568889987765432211 11234566665 6666766554433 458889987765443221 2357
Q ss_pred eeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchh
Q 012996 83 IKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVF 155 (451)
Q Consensus 83 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 155 (451)
|.++...++|.+.+. +.+ -|.+||..++....... -....|.++...++|. |..|+.++-|..|+..+..
T Consensus 265 i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 341 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIG-TFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNR 341 (795)
T ss_dssp EEEEEECTTSCEEEE-ESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGS
T ss_pred EEEEEEcCCCCEEEE-eCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCccc
Confidence 999999988886554 445 58999987665433221 1235799999998887 5667777789999874311
Q ss_pred hhhhhhcccccceec----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---------ccccee
Q 012996 156 EECESQRASHLYLHS----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---------FPSVID 222 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------~~~~i~ 222 (451)
...... -......|.++....++ .|..|+.++-|..||..+++...... ....|.
T Consensus 342 ---------~~~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 342 ---------FKNIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp ---------SEEECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred ---------ceEEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 100000 01124468888776654 56778888789999987765433221 135688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee--eccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
+++.++++..|.+|+.++-|..||..++.. ..... -..+...|.++...+ +.+.+ |+.+ -|.+||..+
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-------~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQV-------ENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQ 480 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCCE-------EEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTT
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCcE-------EEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCC
Confidence 999888888677888877899999876531 11100 002345789998887 65444 4444 488899887
Q ss_pred CceEEEee------cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 300 HNIVRMFR------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 300 ~~~~~~~~------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
++...... .+...|.++...++|...+... +.+..|+..+.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~ 527 (795)
T 4a2l_A 481 RSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGL 527 (795)
T ss_dssp TEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETT
T ss_pred CeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCC
Confidence 65433221 1235789999999887666554 45666766543
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.16 E-value=3.1e-08 Score=95.04 Aligned_cols=303 Identities=15% Similarity=0.132 Sum_probs=173.3
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEE----ecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCC-----Ce
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLAC----VGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAE-----PI 83 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~-----~v 83 (451)
+.|..+|..+|+.+.++...........| -. ....+..+++++.+ +.|.-+|..+++......... .+
T Consensus 78 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g--~a~~~~~v~~~t~d-g~l~AlD~~TG~~~W~~~~~~~~~~~~~ 154 (582)
T 1flg_A 78 SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRG--AAIYGDKVFFGTLD-ASVVALNKNTGKVVWKKKFADHGAGYTM 154 (582)
T ss_dssp TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCC--CEEETTEEEEEETT-TEEEEEESSSCCEEEEEECSCGGGTCBC
T ss_pred CCEEEEECCCCcEEEEEcCCCCcccccccccCCCc--cEEECCEEEEEeCC-CEEEEEECCCCCEEeeecCCCCCcCccc
Confidence 34999999999999888654322111000 00 11234455555566 899999999998876543211 11
Q ss_pred e-E-EEEC--CCCc-EEEEec------cCCCEEEEEcCCCcceeeeccccCC----------------------------
Q 012996 84 K-P-IAAN--SHGT-YIAGGG------QSGDIYMWEVASGRLLKKWHAHYRA---------------------------- 124 (451)
Q Consensus 84 ~-~-~~~~--~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~---------------------------- 124 (451)
. . +... .+|+ .+++++ .+|.|+-+|..+|+.+.........
T Consensus 155 ~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~ 234 (582)
T 1flg_A 155 TGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPT 234 (582)
T ss_dssp CSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTT
T ss_pred ccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccc
Confidence 1 1 1111 1233 566654 3789999999999887655321100
Q ss_pred ------------e-eEEEEccCCcEEEEeeC--------------------C----CcEEEeeCcchhhhhhhhcccccc
Q 012996 125 ------------V-TCLVFSEDGSFLISGSE--------------------D----GCVRIWSLLTVFEECESQRASHLY 167 (451)
Q Consensus 125 ------------v-~~~~~~~~~~~l~s~~~--------------------d----g~i~vwd~~~~~~~~~~~~~~~~~ 167 (451)
+ ..+++.|+...++.+.. | +.|..+|..++....
T Consensus 235 g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W--------- 305 (582)
T 1flg_A 235 GKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW--------- 305 (582)
T ss_dssp SBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE---------
T ss_pred ccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE---------
Confidence 0 13456666666666553 2 578888886643221
Q ss_pred eecccCCcC----cee-EEEEe---ecCCe-eEEEEeeCCCcEEEEEcCCCceeeeeecccce-----------------
Q 012996 168 LHSFTGHTL----RIT-DIVIG---YGGVS-ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVI----------------- 221 (451)
Q Consensus 168 ~~~~~~~~~----~i~-~i~~~---~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i----------------- 221 (451)
......|.. .+. .+.+. .++.. ..++.++.+|.++++|..+++.+..+.....+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~ 385 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEcc
Confidence 111111210 001 11122 13311 37888999999999999999988766532100
Q ss_pred -----------------------------eEEEECCCCCEEEEEeC---------------------------------C
Q 012996 222 -----------------------------DAIALDPAEHVFYAGSR---------------------------------D 239 (451)
Q Consensus 222 -----------------------------~~~~~~~~~~~l~~~~~---------------------------------d 239 (451)
..++++|+...+++... +
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~ 465 (582)
T 1flg_A 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred ccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCc
Confidence 13466776666665432 4
Q ss_pred CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCe-eEEE
Q 012996 240 GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPV-NNIL 317 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~l~ 317 (451)
|.|..||+.+++. +-....+ .++..-.... +.+++.|+.||.++.||.++|+.+.+++...+.+ .-+.
T Consensus 466 G~l~A~D~~tG~~---------~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~ 535 (582)
T 1flg_A 466 GSLRAMDPVSGKV---------VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPIT 535 (582)
T ss_dssp EEEEEECTTTCCE---------EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred ceEEEEECCCCCE---------EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceE
Confidence 6788888877642 1111111 1222211222 7788889999999999999999999988754422 2367
Q ss_pred EEecCc-eeeeccC-CCCcccc
Q 012996 318 VVRRPL-YLNLGSF-SNPHTSS 337 (451)
Q Consensus 318 ~s~~~~-~l~~~s~-d~~i~iw 337 (451)
|..+|+ |+++.+. -|.+-+|
T Consensus 536 y~~~G~qYv~~~~G~gg~~~~~ 557 (582)
T 1flg_A 536 WEQDGEQYLGVTVGYGGAVPLW 557 (582)
T ss_dssp EEETTEEEEEEEECCCSHHHHH
T ss_pred EEECCEEEEEEEccCCCccccc
Confidence 778886 4444333 3444445
No 244
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.09 E-value=8.5e-08 Score=85.28 Aligned_cols=237 Identities=10% Similarity=0.014 Sum_probs=149.3
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec--------------------cccCCeeEEEEcc-CCcEEEE
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH--------------------AHYRAVTCLVFSE-DGSFLIS 139 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~~~l~s 139 (451)
....+++++++++++.++..++.|..|+..++... .+. .....+.++++.+ +++ |+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 35678899999997778888899999987665432 221 0123578899997 665 555
Q ss_pred eeCCCcEEEeeCcchhhhhhhhccccccee-cccC-CcCceeEEEEee-cCCeeEEEEeeC-----------------CC
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHLYLH-SFTG-HTLRITDIVIGY-GGVSATIVSASE-----------------DR 199 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~i~~~~-~~~~~~l~s~~~-----------------d~ 199 (451)
+...+.|..+|..++. ...+. ...+ .......+++.+ ++ ++.++... ++
T Consensus 97 ~d~~~~i~~~d~~~g~---------~~~~~~~~~~~~~~~p~~i~~d~~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH---------ATQLATSVDGVPFKWLYAVTVDQRTG--IVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp EETTTEEEEECTTCEE---------CEEEESEETTEECSCEEEEEECTTTC--CEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred EECCCCEEEEeCCCCE---------EEEecccCCCCcccccceEEEecCCC--EEEEECCcccccccccceehcccCCCc
Confidence 5444558888874321 01111 1111 123467788887 76 55555322 36
Q ss_pred cEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996 200 TCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 200 ~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
.|..||..+++.............++++|+++.|+++ +..+.|+.|++...... .......+ .+ ...+++.
T Consensus 166 ~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~----~~~~~~~~---~g-P~gi~~d 237 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG----TAEVLVKI---PN-PGNIKRN 237 (322)
T ss_dssp EEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT----CEEEEEEC---SS-EEEEEEC
T ss_pred eEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC----ccceEEeC---CC-CCCeEEC
Confidence 7889998776643333333456679999999977766 55689999998753210 01122221 23 7789999
Q ss_pred c-CCEEEEEcC----------CCcEEEEeCCCCceEEEeecCC----CCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 279 T-GDLLISGSE----------DGMVRVWDPITHNIVRMFRLAK----GPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 279 ~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+ |.+.++... .+.|..+|. .++.+..+.... ..++.+++ .++.++++....+.|..++..
T Consensus 238 ~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 238 ADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred CCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 9 876666544 467889986 578887776543 35677776 466666666677778777754
No 245
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.08 E-value=9.1e-09 Score=96.07 Aligned_cols=237 Identities=9% Similarity=-0.010 Sum_probs=152.6
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceE-e-eccCcccCC-----------------CCCCccEEE
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-L-ASSQLREQP-----------------SASSGSILY 65 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~~~-----------------~~d~g~i~v 65 (451)
+++.. .++.|.+-|+.+.++...+....+ .....++ + . |+++++.++ ...++.+.+
T Consensus 105 fVnd~-~~~rVavIdl~t~~~~~ii~ip~g--~~phg~~--~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 105 FMNDK-ANTRVARVRCDVMKCDAILEIPNA--KGIHGLR--PQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEET-TTTEEEEEETTTTEEEEEEECSSC--CSEEEEE--ECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred EEEcC-CCCEEEEEECCCceEeeEEeCCCC--CCCccee--eeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 44555 778899999999998874432111 1222333 3 2 555555555 344579999
Q ss_pred EECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--------------------------------------CEEEE
Q 012996 66 WSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--------------------------------------DIYMW 107 (451)
Q Consensus 66 w~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------------------------------~i~iw 107 (451)
.|.++.+......-.+....++++|+|+++++.+.+. .|.|.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999988776654334668889999999998887553 46777
Q ss_pred EcCC--Ccc-eeeeccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhh-cccccceecccCCcCceeEEE
Q 012996 108 EVAS--GRL-LKKWHAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQ-RASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 108 d~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~ 182 (451)
|..+ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+........ ........... -......++
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a 337 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA 337 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence 7776 444 344432 23557899999999877655 57899999997642211000 01111222222 234567889
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCC----------Cceeeeeecccce------eEEEECCCCCEEEEEeCC--CcE--
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLK----------GRLLRNIVFPSVI------DAIALDPAEHVFYAGSRD--GSI-- 242 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~~~i------~~~~~~~~~~~l~~~~~d--g~i-- 242 (451)
|+++| ...++.-.|+.|..||+.+ .+.+..+...... ..+.++|+|++|+++..- .++
T Consensus 338 F~~dG--~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 338 FDGRG--NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp ECTTS--EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred ECCCC--eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence 99988 6777888999999999977 4556666533222 123458999999998642 223
Q ss_pred ---------EEEEccCC
Q 012996 243 ---------YIAALNAE 250 (451)
Q Consensus 243 ---------~i~d~~~~ 250 (451)
.++|+...
T Consensus 416 ~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGD 432 (595)
T ss_dssp CCSSCCEEEEEEECSSS
T ss_pred CCCCCCCcceEEEcCCC
Confidence 77888544
No 246
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.06 E-value=3e-08 Score=83.92 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=134.5
Q ss_pred CceeeeeecCCCCCCceEEecceEeeccCcccCCCC-CCccEEEEECCCCceeeeecCCCCe--eEEEECCCCcEE-EEe
Q 012996 23 GAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSA-SSGSILYWSWSKPQVEVKSLPAEPI--KPIAANSHGTYI-AGG 98 (451)
Q Consensus 23 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d~g~i~vw~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l-~~~ 98 (451)
.+.+.++.. .. ......+. |++++.+.++.+. .++.|.+.|..+++........... ..+++. +..| ++.
T Consensus 9 ~~vv~~~p~-~~-~~f~~Gl~--~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 9 VEVLNEFPH-DP-YAFTQGLV--YAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp EEEEEEEEC-CT-TCCEEEEE--ECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred ceEEEEEEC-CC-CCCcccEE--EeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence 345555532 21 11234445 8888766655543 2389999999999877654332322 344554 4444 444
Q ss_pred ccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC--C--
Q 012996 99 GQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--H-- 174 (451)
Q Consensus 99 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~-- 174 (451)
-.++.+.++|..+.+.+.++...... ...+++|++.++++..++.|.++|..+. .....+.- +
T Consensus 83 ~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~-----------~v~~~I~Vg~~~~ 149 (266)
T 2iwa_A 83 WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF-----------KLIKKHNVKYNGH 149 (266)
T ss_dssp TTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC-----------CEEEEEECEETTE
T ss_pred ecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC-----------cEEEEEEECCCCc
Confidence 56789999999999998888533111 2335567777777777889999998652 22222221 1
Q ss_pred -cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEE-EeC
Q 012996 175 -TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYA-GSR 238 (451)
Q Consensus 175 -~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~-~~~ 238 (451)
-..++.+.+. ++ ...+....++.|.+.|..+++.+..+... ...+.++|+|+++.+++ +..
T Consensus 150 p~~~~nele~~-dg--~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~ 226 (266)
T 2iwa_A 150 RVIRLNELEYI-NG--EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL 226 (266)
T ss_dssp ECCCEEEEEEE-TT--EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred ccccceeEEEE-CC--EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence 1235677776 54 55555556889999999999999988743 24689999998876555 556
Q ss_pred CCcEEEEEccCC
Q 012996 239 DGSIYIAALNAE 250 (451)
Q Consensus 239 dg~i~i~d~~~~ 250 (451)
.+.++..++...
T Consensus 227 ~~~v~~i~l~~~ 238 (266)
T 2iwa_A 227 WPKLFEIKLHLV 238 (266)
T ss_dssp CSEEEEEEEEEC
T ss_pred CCeEEEEEEecc
Confidence 788999888764
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.06 E-value=2.2e-07 Score=80.13 Aligned_cols=239 Identities=10% Similarity=-0.048 Sum_probs=140.8
Q ss_pred CCeEEEECccCcee-----eeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEE
Q 012996 13 TGIGCWDLESGAEQ-----LRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPI 86 (451)
Q Consensus 13 g~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~ 86 (451)
+.|+.+|+...... ..+.. +......++ +.+++..+..+...++.|..++.+......... .......+
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~--~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i 84 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLA--FDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI 84 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEE--EETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE
T ss_pred CeEEEEEecCcccccccceeeecC---CCCcEEEEE--EecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE
Confidence 47899998754321 01111 112345566 888776666655544899999988665433222 23578999
Q ss_pred EECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhc
Q 012996 87 AANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 87 ~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~ 162 (451)
+++|++..| ++-...+.|.++++..................++++|++..|+.+.. .+.|..+++...
T Consensus 85 a~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-------- 156 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-------- 156 (267)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--------
T ss_pred EEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC--------
Confidence 999975544 45455678999998643322222222246789999996555555443 367888877321
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-CCCc
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGS 241 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~ 241 (451)
....+ .........++++++++. .++++-...+.|..+|+........+........++.. +..++++. ..+.
T Consensus 157 -~~~~~--~~~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~ 230 (267)
T 1npe_A 157 -NRRIL--AQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNS 230 (267)
T ss_dssp -CCEEE--ECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTE
T ss_pred -CcEEE--EECCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCe
Confidence 11111 112234567899988652 45556666789999998754433333322334566654 45555554 5689
Q ss_pred EEEEEccCCCCCCCCCCceeeeeeccCC-cceeEEEEec
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSDHS-KAVTCLAYST 279 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 279 (451)
|..+|..++ +.+..+.... .....+++.|
T Consensus 231 v~~~d~~~g---------~~~~~i~~g~~~~p~gi~~~~ 260 (267)
T 1npe_A 231 VIAMDLAIS---------KEMDTFHPHKQTRLYGITIAL 260 (267)
T ss_dssp EEEEETTTT---------EEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEeCCCC---------CceEEEccccccccceeeecC
Confidence 999998775 3344443222 2466777776
No 248
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.02 E-value=8.5e-08 Score=81.20 Aligned_cols=203 Identities=11% Similarity=0.065 Sum_probs=134.3
Q ss_pred cceeeeccccC--CeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhcccccceecccC-CcCceeEEEEeecC
Q 012996 113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRASHLYLHSFTG-HTLRITDIVIGYGG 187 (451)
Q Consensus 113 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~ 187 (451)
+.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.++ ..+..+.- .......+++. +
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-----------~v~~~i~l~~~~fgeGi~~~--g 75 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG-----------KVENIHKMDDSYFGEGLTLL--N 75 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC-----------CEEEEEECCTTCCEEEEEEE--T
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC-----------CEEEEEecCCCcceEEEEEe--C
Confidence 3445553 443 3579999998765555543 579999999663 22332221 11122244443 3
Q ss_pred CeeEEEEeeCCCcEEEEEcCCCceeeeeecc-cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 188 VSATIVSASEDRTCKVWSLLKGRLLRNIVFP-SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
. .+.++.-.++.+.++|..+.+.+..+..+ .. ...++++++.++++..++.|.++|..+.. .+..+.
T Consensus 76 ~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~---------v~~~I~ 143 (266)
T 2iwa_A 76 E-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFK---------LIKKHN 143 (266)
T ss_dssp T-EEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCC---------EEEEEE
T ss_pred C-EEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCc---------EEEEEE
Confidence 2 55566667899999999999999988754 32 23455678888888888999999998753 222222
Q ss_pred c--C---CcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCC-------------CCeeEEEEEecCcee-ee
Q 012996 267 D--H---SKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAK-------------GPVNNILVVRRPLYL-NL 327 (451)
Q Consensus 267 ~--~---~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l-~~ 327 (451)
- + -..++.+.|..+...+....++.|.+.|..+++.+..+.... .....|+|+|+++.| ++
T Consensus 144 Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT 223 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT 223 (266)
T ss_dssp CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE
T ss_pred ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE
Confidence 1 1 123667887755455555568899999999999999987421 256899999998655 56
Q ss_pred ccCCCCccccccCC
Q 012996 328 GSFSNPHTSSRRHG 341 (451)
Q Consensus 328 ~s~d~~i~iw~~~~ 341 (451)
+...+.+..-++..
T Consensus 224 gk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 224 GKLWPKLFEIKLHL 237 (266)
T ss_dssp ETTCSEEEEEEEEE
T ss_pred CCCCCeEEEEEEec
Confidence 66677777766654
No 249
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.01 E-value=2.6e-06 Score=85.63 Aligned_cols=297 Identities=14% Similarity=0.096 Sum_probs=181.6
Q ss_pred CCCeEEEECccCceeeeeecC----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--------cC
Q 012996 12 DTGIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LP 79 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--------~~ 79 (451)
++.|.+||..+++........ .-....|.++. ..++|.+.+.+ . +.|.+|+..+....... ..
T Consensus 234 ~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWigt-~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 308 (795)
T 4a2l_A 234 GAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLA--MDSQNRLWIGT-F--NDLNIYHEGTDSFASYSSNPVENGSLS 308 (795)
T ss_dssp SSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEE--ECTTSCEEEEE-S--SCEEEEETTTTEEEEECCCTTSTTSCS
T ss_pred CCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEE--EcCCCCEEEEe-C--ChhheEcCCCCeEEEEecCCCCCCCCC
Confidence 345889998766543221111 11235677776 66667655433 3 35888998776654332 12
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
...|.++...++|.+- .|+.++-|..|+..++....... -....|.++...++|. |..|+.++-|..|+..+
T Consensus 309 ~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~ 386 (795)
T 4a2l_A 309 QRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPIT 386 (795)
T ss_dssp SSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTT
T ss_pred CCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCC
Confidence 3579999999988754 56666779999876554322111 1245689999888876 55677777899999754
Q ss_pred hhhhhhhhcccccceecc------cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-----ccccee
Q 012996 154 VFEECESQRASHLYLHSF------TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-----FPSVID 222 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~i~ 222 (451)
. ........ ......|.+++...++ ..|..|+.++-|.+||..+++...... ....|.
T Consensus 387 ~---------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~ 455 (795)
T 4a2l_A 387 Q---------RFTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY 455 (795)
T ss_dssp C---------CEEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE
T ss_pred C---------cEEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE
Confidence 1 11000000 0123568888876665 547778887789999988776433221 235688
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee----ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL----SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~ 297 (451)
++...+++.+.+ |+. +-+.+||..+... ...... .-....|.++...+ +.+.+ |+. +-|..||.
T Consensus 456 ~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~ 524 (795)
T 4a2l_A 456 AILPDGEGNLWL-GTL-SALVRFNPEQRSF-------TTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQ 524 (795)
T ss_dssp EEEECSSSCEEE-EES-SCEEEEETTTTEE-------EECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEE
T ss_pred EEEECCCCCEEE-Eec-CceeEEeCCCCeE-------EEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeC
Confidence 999888877554 444 4588898766421 111100 11236788998888 55544 444 45888998
Q ss_pred CCCceEEEee-------cCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 298 ITHNIVRMFR-------LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 298 ~~~~~~~~~~-------~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.+++. .+. .+...|.++..+++|...+++. . .+..|+..+
T Consensus 525 ~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 525 EGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp ETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred CCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence 77655 222 2345789999999887655443 3 455566543
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.01 E-value=1.9e-07 Score=78.01 Aligned_cols=190 Identities=12% Similarity=0.126 Sum_probs=125.9
Q ss_pred ceeeeccccCC--eeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 114 LLKKWHAHYRA--VTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 114 ~~~~~~~~~~~--v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
.+.++ .|... ...+.|+ ++.++.+.+.+| .|+++|+.++. .+...... .......+.+.++
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-----------v~~~~~l~-~~~FgeGit~~g~- 97 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-----------TLQQIELG-KRYFGEGISDWKD- 97 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-----------EEEEEECC-TTCCEEEEEEETT-
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCc-----------EEEEEecC-CccceeEEEEeCC-
Confidence 34555 35443 3788998 677777777776 89999996632 22222211 2222222333342
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-- 267 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 267 (451)
.+.+..-.++.+.+||..+.+.+.++..+..-..++ ++++.|+.+..++.|.++|..+.. .+..+.-
T Consensus 98 ~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~---------v~~~I~V~~ 166 (262)
T 3nol_A 98 KIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLT--HNDQYLIMSDGTPVLRFLDPESLT---------PVRTITVTA 166 (262)
T ss_dssp EEEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEE--ECSSCEEECCSSSEEEEECTTTCS---------EEEEEECEE
T ss_pred EEEEEEeeCCEEEEEECccCcEEEEEECCCCceEEe--cCCCEEEEECCCCeEEEEcCCCCe---------EEEEEEecc
Confidence 455555568999999999999999998655444444 567888887778889999998764 2222221
Q ss_pred CC---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC------------CCCeeEEEEEecCceeeecc
Q 012996 268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA------------KGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 268 ~~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~v~~l~~s~~~~~l~~~s 329 (451)
.. ..++.+.|..+...+..-.++.|.+.|..+++.+..+... ....+.|+|+|+++.|..++
T Consensus 167 ~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 167 HGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 12 3345577765655555556889999999999999988752 12468899999887766554
No 251
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.01 E-value=9e-08 Score=93.71 Aligned_cols=243 Identities=10% Similarity=0.135 Sum_probs=149.2
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC----CCccEEEEECCCCceeeeec
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA----SSGSILYWSWSKPQVEVKSL 78 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~----d~g~i~vw~~~~~~~~~~~~ 78 (451)
.|+.++ .|+.|..+|..+|+.+.++...... ...+.... ...++..++..+. .+|.|..+|..+++......
T Consensus 119 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGT-LDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAP--RVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCC--EEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEc-CCCEEEEEECCCCCEeeeeccCCCCCcceecCCC--EEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 456667 7999999999999999887653211 11121111 2224444433322 13899999999998776543
Q ss_pred C--CC------------------------------CeeEEEECCCCcEEEEeccCC-------------------CEEEE
Q 012996 79 P--AE------------------------------PIKPIAANSHGTYIAGGGQSG-------------------DIYMW 107 (451)
Q Consensus 79 ~--~~------------------------------~v~~~~~~~~~~~l~~~~~dg-------------------~i~iw 107 (451)
. .. ....+++.|++..++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 1 11 112468888888888887665 39999
Q ss_pred EcCCCcceeeecc--cc-------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhccc-----------
Q 012996 108 EVASGRLLKKWHA--HY-------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS----------- 164 (451)
Q Consensus 108 d~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----------- 164 (451)
|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.+.++|..++..........
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999998877753 22 2232233334665 68899999999999987764321100000
Q ss_pred cccee------------cccCCcC--ceeEEEEeecCCeeEEEE------------------------------------
Q 012996 165 HLYLH------------SFTGHTL--RITDIVIGYGGVSATIVS------------------------------------ 194 (451)
Q Consensus 165 ~~~~~------------~~~~~~~--~i~~i~~~~~~~~~~l~s------------------------------------ 194 (451)
..++. .+.+..+ .-..++++++. .+++.
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT--GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT--TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCC--CEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 00000 0000000 00113444443 22222
Q ss_pred eeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 195 ASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
...+|.|..||+.+++.+.............+...+.++++++.||.++.||..+++
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 123488999999999998888765555544555578899999999999999999874
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.94 E-value=2.5e-07 Score=77.29 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=126.2
Q ss_pred cceeeeccccC--CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 113 RLLKKWHAHYR--AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 113 ~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
+.+.++ .|.. ....+.|+ ++.++.+.+.+|.|+++|+.++. .+..+......-..+++ .+. .
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-----------v~~~~l~~~~FgeGit~--~g~-~ 107 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-----------PVWMERLGNIFAEGLAS--DGE-R 107 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSS-----------CSEEEECTTCCEEEEEE--CSS-C
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCc-----------EEeEECCCCcceeEEEE--eCC-E
Confidence 344455 3443 34688887 46777788888999999997632 22222111111123444 332 5
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cC
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DH 268 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~ 268 (451)
+.+..-.++.+.+||..+.+.+.++..+..-..++ ++++.|+++..++.|+++|..+.+ .+.++. .+
T Consensus 108 Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~---------v~~~I~V~~~ 176 (268)
T 3nok_A 108 LYQLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFA---------LVGAVQVKLR 176 (268)
T ss_dssp EEEEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCC---------EEEEEECEET
T ss_pred EEEEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCe---------EEEEEEeCCC
Confidence 55566678999999999999999998655444555 567888888889999999988864 222222 12
Q ss_pred C---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC-------------CCCeeEEEEEecCceeeec
Q 012996 269 S---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 269 ~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~ 328 (451)
. ..++.+.|..|...+..-.++.|.+.|..+++.+..+... ..-.+.|+++|+++.|...
T Consensus 177 g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 177 GQPVELINELECANGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp TEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred CcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 2 2446677776655555556889999999999999988742 1356889999977665544
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.93 E-value=3.8e-07 Score=87.40 Aligned_cols=241 Identities=11% Similarity=0.025 Sum_probs=141.7
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC-----CCccEEEEECCCCceeeee
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA-----SSGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~-----d~g~i~vw~~~~~~~~~~~ 77 (451)
.|+.++ .|+.|..+|..+|+.+.++...... ...+.+.. ...++..++.... + +.|..+|..+++...+.
T Consensus 117 ~v~v~~-~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P--~v~~g~v~vg~~~~~~~~~-g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 117 QIVKKQ-ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAP--FVAKDTVLMGCSGAELGVR-GAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEEECBCGGGTCC-CEEEEEETTTCCEEEEE
T ss_pred EEEEEe-CCCEEEEEECCCCCEEEEecCCCCCccceeccCC--EEECCEEEEEecCCccCCC-CEEEEEECCCCcEEEEE
Confidence 355666 7899999999999998877543210 01122111 2224444333322 4 89999999998877654
Q ss_pred cCCCCe---------------------------------------eEEEECCCCcEEEEeccC----------------C
Q 012996 78 LPAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------G 102 (451)
Q Consensus 78 ~~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g 102 (451)
....+. ..+++.++...+..+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 322111 235666766666665532 2
Q ss_pred CEEEEEcCCCcceeeecc--cc--------CCeeEEEEccCCc---EEEEeeCCCcEEEeeCcchhhhhhhhccc-----
Q 012996 103 DIYMWEVASGRLLKKWHA--HY--------RAVTCLVFSEDGS---FLISGSEDGCVRIWSLLTVFEECESQRAS----- 164 (451)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~~~~~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----- 164 (451)
.|..+|..+|+.+..++. |. .++ -+....+|+ .++.++.+|.+.++|..++..........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 599999999998877643 21 222 122224674 57788889999999987754322111000
Q ss_pred -------cccee--------------cccCCcC--ceeEEEEeecCCeeEEEEee-------------------------
Q 012996 165 -------HLYLH--------------SFTGHTL--RITDIVIGYGGVSATIVSAS------------------------- 196 (451)
Q Consensus 165 -------~~~~~--------------~~~~~~~--~i~~i~~~~~~~~~~l~s~~------------------------- 196 (451)
..++. ...+..+ .-..++++|+. .+++..+
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES--RTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC--CEEEEEchhccccccccccccccCCccccccc
Confidence 00000 0000000 00123455443 3333322
Q ss_pred ------------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 197 ------------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 197 ------------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.+|.|..||+.+++.+..+.....+....+...+..+++++.||.++.+|..+++
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 3578999999999998888765544433333356778889999999999999875
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.92 E-value=1.2e-06 Score=77.12 Aligned_cols=227 Identities=9% Similarity=0.014 Sum_probs=135.5
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEEC 158 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~ 158 (451)
.....++|+++++++++-..++.|..||... .....+. ....+..+++.++++++++..... .|..++..++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~--- 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT--- 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---
Confidence 5678999999999777766788999999754 3333332 235688999999998666554332 36666653321
Q ss_pred hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCce-eeee-------e---cccceeEEEEC
Q 012996 159 ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRL-LRNI-------V---FPSVIDAIALD 227 (451)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~-------~---~~~~i~~~~~~ 227 (451)
...+.... .......++..+++ ..+++-..++.|+.+|...+.. +... . .-...+.+ +
T Consensus 107 ------~~~~~~~~-~~~~~~g~~~~~~~--~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 107 ------VETLLTLP-DAIFLNGITPLSDT--QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp ------EEEEEECT-TCSCEEEEEESSSS--EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred ------EEEEEeCC-CccccCcccccCCC--cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 11111111 11223344443333 4455554688999999865421 1100 0 01123444 7
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEE-
Q 012996 228 PAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVR- 304 (451)
Q Consensus 228 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~- 304 (451)
|+++.|+++. ..+.|+.|++....... ....... ......+++++ |+++++....+.|.++|.. ++...
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~---~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPG---EPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTII 247 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBC---CCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEE
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCC---ccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEE
Confidence 7887776654 56789999987521000 0111111 13467789999 8877777778899999975 65532
Q ss_pred -EeecCCCCeeEEEEE---ecCceeeeccCC
Q 012996 305 -MFRLAKGPVNNILVV---RRPLYLNLGSFS 331 (451)
Q Consensus 305 -~~~~~~~~v~~l~~s---~~~~~l~~~s~d 331 (451)
.+.......++++|. |++..|..++..
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eecccccCCceEEEEecccCCCCEEEEECCC
Confidence 344334568999999 887777665543
No 255
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.92 E-value=1.6e-07 Score=78.46 Aligned_cols=180 Identities=12% Similarity=0.111 Sum_probs=120.0
Q ss_pred EEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCCCcceee
Q 012996 40 ACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVASGRLLKK 117 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~ 117 (451)
..+. |+ ++.+..++|.+ ...|+++|+.+++.................++++.|... -.++.+.+||..+.+.+.+
T Consensus 46 qGL~--~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 46 EGFF--YR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEE--EE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred ceEE--EE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 4444 77 66666666654 139999999999987665544555444333445454443 4578999999999999998
Q ss_pred eccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC----Cc-CceeEEEEeecCCeeEE
Q 012996 118 WHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG----HT-LRITDIVIGYGGVSATI 192 (451)
Q Consensus 118 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~-~~i~~i~~~~~~~~~~l 192 (451)
+...... ..++ +|++.|+.+..++.|.++|..+. ..+..+.- .. ..++.+.+. ++ ...
T Consensus 123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~-----------~v~~~I~V~~~g~~~~~lNELe~~-~G--~ly 185 (262)
T 3nol_A 123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESL-----------TPVRTITVTAHGEELPELNELEWV-DG--EIF 185 (262)
T ss_dssp EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTC-----------SEEEEEECEETTEECCCEEEEEEE-TT--EEE
T ss_pred EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCC-----------eEEEEEEeccCCccccccceeEEE-CC--EEE
Confidence 8643221 3333 56777777666788999998652 22222211 11 234456665 44 555
Q ss_pred EEeeCCCcEEEEEcCCCceeeeeecc-------------cceeEEEECCCCCEEEEEeCC
Q 012996 193 VSASEDRTCKVWSLLKGRLLRNIVFP-------------SVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 193 ~s~~~d~~i~iwd~~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~~d 239 (451)
+..-.+..|.+.|..+++.+..+... ...+.++++|+++.|++.+..
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 55557889999999999999888742 245889999988888777653
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.91 E-value=8.3e-06 Score=72.00 Aligned_cols=239 Identities=11% Similarity=-0.033 Sum_probs=145.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCC----CcceeeeccccCCeeEEEEccC-C
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSED-G 134 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~ 134 (451)
..|+..++.+............+..++|++.+. ++++-..++.|..+++.. ......+.........+++.+. +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 578888988776554444556788999998655 445555568899999875 2222223323345678999874 4
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR 213 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~ 213 (451)
+++++-...+.|.++++... ..............++++.|.+. .++++.... +.|...++. +....
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~-----------~~~~~~~~~~~~P~~iavdp~~g-~ly~~d~~~~~~I~~~~~d-G~~~~ 156 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGV-----------KRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLN-GVDIY 156 (316)
T ss_dssp EEEEEETTTTEEEEEETTSS-----------SEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETT-SCCEE
T ss_pred eEEEEECCCCEEEEEeCCCC-----------ceEEEEECCCCCcceEEeCCCCC-EEEEEccCCCCeEEEEcCC-CCCeE
Confidence 44555566788999987431 11111122234567889987552 344444333 688888875 33333
Q ss_pred eee--cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996 214 NIV--FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 214 ~~~--~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
.+. .-.....++++|++..|+.+. ..+.|..+|+..... ..+............+++..+.++++-...+
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~~~~ly~~d~~~~ 229 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINE 229 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEECCEEEEEECCCC
Confidence 332 234578999999877776665 556899999875321 2222221223445778876566667777788
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 291 MVRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
.|..++..+++.+..+.........|...
T Consensus 230 ~V~~~~~~~g~~~~~i~~~~~~p~~i~v~ 258 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLLAENLLSPEDMVLF 258 (316)
T ss_dssp EEEEEETTTCCCCEEEECSCSCCCCEEEE
T ss_pred eEEEEeCCCCcceEEEecCCCCceEEEEe
Confidence 99999988887777765432333444433
No 257
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.89 E-value=3.2e-06 Score=76.91 Aligned_cols=240 Identities=8% Similarity=-0.098 Sum_probs=150.8
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI 138 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 138 (451)
..|+..++..............+..++|++.+. ++++-...+.|..+++........+.........+++.+. +.+++
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~ 175 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 175 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence 567788877666555444556788999997554 4455456778999998765543333333345578899874 44455
Q ss_pred EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceeeeee-
Q 012996 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV- 216 (451)
Q Consensus 139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~- 216 (451)
+-...+.|.+.++.. ......+........++++.|.+. .++++-... +.|..+++..........
T Consensus 176 ~d~~~~~I~~~~~dg-----------~~~~~l~~~~l~~P~giavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 176 TDSGTSRIEVANLDG-----------AHRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EETTTTEEEECBTTS-----------CSCEEEECSSCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EcCCCCeEEEEeCCC-----------CceEEeecCCCCCCcEEEEEcCCC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 555667888888743 111111222334568899987652 444444444 788888875433222222
Q ss_pred cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996 217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295 (451)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw 295 (451)
.-.....++++|++..|+.+. ..+.|..+|+..... ...+.........|++..+.++++-...+.|..+
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEEECCCCCceEEEEECCEEEEeeCCCCeEEEE
Confidence 233578899998777666654 556899999875321 1112223345677888547677777778889999
Q ss_pred eCCCCceEEEeecCCCCeeEEEEEec
Q 012996 296 DPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+..+++.+..+.........|++...
T Consensus 315 ~~~~G~~~~~i~~~~~~p~gi~v~~~ 340 (386)
T 3v65_B 315 NKFTGKNQEIIRNKLHFPMDIHTLHP 340 (386)
T ss_dssp ETTTCCSCEEEECSCSCCCCEEEESG
T ss_pred ECCCCcceEEEccCCCCCceEEEEch
Confidence 98788887777655455666666543
No 258
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=1.8e-06 Score=71.55 Aligned_cols=190 Identities=17% Similarity=0.125 Sum_probs=124.9
Q ss_pred ceeeecccc--CCeeEEEEccCCcEEEEeeCCC--cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe
Q 012996 114 LLKKWHAHY--RAVTCLVFSEDGSFLISGSEDG--CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS 189 (451)
Q Consensus 114 ~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 189 (451)
.+.++ .|. .....+.|++ +.++.+.+.+| .|+.+|+.++ ..+....... ......+...+.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg-----------kv~~~~~l~~-~~fgeGi~~~~~- 75 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG-----------RILQRAEVPP-PYFGAGIVAWRD- 75 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC-----------CEEEEEECCT-TCCEEEEEEETT-
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCC-----------CEEEEEeCCC-CcceeEEEEeCC-
Confidence 34455 454 3456899986 56666666654 8999999663 2222222111 122222222332
Q ss_pred eEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeecc--
Q 012996 190 ATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSD-- 267 (451)
Q Consensus 190 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 267 (451)
.+....-.++.+.+||..+.+.+.++..+..-..++ +++..|+++..++.|.++|..+.. .+.++.-
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~---------~~~~I~V~~ 144 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATLTPRARFRYPGEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ---------QVGSIKVTA 144 (243)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEECSSCCCEEE--ECSSCEEEECSSSEEEEECTTTCC---------EEEEEECEE
T ss_pred EEEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEEe--eCCCEEEEECCCCeEEEEeCCCCe---------EEEEEEEcc
Confidence 556666678999999999999999998665555555 467788888778999999998864 2222221
Q ss_pred CC---cceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecC-------------CCCeeEEEEEecCceeeecc
Q 012996 268 HS---KAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLA-------------KGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 268 ~~---~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~l~~s~~~~~l~~~s 329 (451)
+. ..++.+.+..+..++..-.+..|.+.|..+++.+..+... ..-.+.|+++|++..|...+
T Consensus 145 ~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 145 GGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 22 3455677765666655556789999999999999988732 12568899999776665543
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.88 E-value=6e-06 Score=82.83 Aligned_cols=301 Identities=11% Similarity=0.050 Sum_probs=175.2
Q ss_pred CeEEEECccCceeeeeecC----CCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee------------
Q 012996 14 GIGCWDLESGAEQLRYKSC----ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS------------ 77 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~------------ 77 (451)
.|.+||..+++........ .-....|.++. ..++|.+.+. ... +-|.+++..+.......
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~d~~g~lWig-t~~-~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~ 306 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIK--QLKDNKLWIA-TEL-NGIMILDLQQNQFLLPEQIRFEFIREGDN 306 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEE--ECTTSEEEEE-ESS-SCEEEEETTCC---------CEEECBCSS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEE--ECCCCCEEEE-eCC-CCeEEECCCCCeeeeeeccccccccCCCC
Confidence 5888887665543211111 11234566665 5566665543 333 56888888765533211
Q ss_pred ---cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec---------cccCCeeEEEEccCCcEEEEeeCCCc
Q 012996 78 ---LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH---------AHYRAVTCLVFSEDGSFLISGSEDGC 145 (451)
Q Consensus 78 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~s~~~dg~ 145 (451)
.....|.++...++|. |-+|+.++-|..++..++....... .....|.++...+++. |..|+.++-
T Consensus 307 ~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~G 384 (781)
T 3v9f_A 307 NYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGG 384 (781)
T ss_dssp TTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSC
T ss_pred CCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCc
Confidence 2345799999998887 4456666779999876554322111 1235688998888776 556676667
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee---ccccee
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV---FPSVID 222 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~i~ 222 (451)
|..|+..+.... ............|.++....++ .|..|+.++-+..+|..+++...... ....|.
T Consensus 385 l~~~~~~~~~~~--------~~~~~~~~~~~~v~~i~~d~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~ 453 (781)
T 3v9f_A 385 INVFENGKRVAI--------YNKENRELLSNSVLCSLKDSEG---NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVR 453 (781)
T ss_dssp EEEEETTEEEEE--------CC-----CCCSBEEEEEECTTS---CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEE
T ss_pred EEEEECCCCeEE--------EccCCCCCCCcceEEEEECCCC---CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEE
Confidence 889987542100 0000001234568888776554 45667777779999987765433221 235788
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~ 299 (451)
++...+++. |.+|+. +-+..||..+... ....... .....|.++...+...|..|+.++-|..||..+
T Consensus 454 ~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 454 VFYEDKNKK-IWIGTH-AGVFVIDLASKKV-------IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp EEEECTTSE-EEEEET-TEEEEEESSSSSC-------CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred EEEECCCCC-EEEEEC-CceEEEeCCCCeE-------EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 998888776 445555 5588898776431 1111111 113678899888833344555544477899776
Q ss_pred CceEEEeec----CCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 300 HNIVRMFRL----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 300 ~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
++.. .+.. ....|.++...++|.+.++.. .|.+..|+..+.
T Consensus 525 ~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~ 569 (781)
T 3v9f_A 525 QLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNF 569 (781)
T ss_dssp CEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTC
T ss_pred CeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCC
Confidence 6433 3321 234688999988887655544 665466776544
No 260
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.87 E-value=7.8e-06 Score=73.23 Aligned_cols=239 Identities=8% Similarity=-0.089 Sum_probs=150.0
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC-CcEEE
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED-GSFLI 138 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 138 (451)
..|+..+...............+..++|++.+..| .+-...+.|..+++........+.........+++.+. +.+++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~ 132 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 132 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence 46777787766655444445668899999755555 45456778999998766544433333345678999874 45555
Q ss_pred EeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceeeeee-
Q 012996 139 SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLRNIV- 216 (451)
Q Consensus 139 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~- 216 (451)
+-...+.|.+.++.. ...............++++.|.+. .++++-... +.|..+++........+.
T Consensus 133 ~d~~~~~I~~~~~dG-----------~~~~~l~~~~l~~P~~iavdp~~g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 200 (349)
T 3v64_C 133 TDSGTSRIEVANLDG-----------AHRKVLLWQSLEKPRAIALHPMEG-TIYWTDWGNTPRIEASSMDGSGRRIIADT 200 (349)
T ss_dssp EETTTTEEEEEETTS-----------CSCEEEECTTCSCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCSCEESCCS
T ss_pred EcCCCCeEEEEcCCC-----------CceEEEEeCCCCCcceEEEecCcC-eEEEeccCCCCEEEEEeCCCCCcEEEEEC
Confidence 655677899998843 111111222334568899987552 455555455 788888876433222222
Q ss_pred cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEE
Q 012996 217 FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVW 295 (451)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iw 295 (451)
.-.....++++|++..|+.+. ..+.|..+|+..... . ..+.........+++..+.++++-...+.|..+
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~-------~--~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-------K--AVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E--EEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCce-------E--EEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence 234578999998777666654 567899999875321 1 112222345677888546677777778889999
Q ss_pred eCCCCceEEEeecCCCCeeEEEEEe
Q 012996 296 DPITHNIVRMFRLAKGPVNNILVVR 320 (451)
Q Consensus 296 d~~~~~~~~~~~~~~~~v~~l~~s~ 320 (451)
+..+++.+..+........++++..
T Consensus 272 ~~~~G~~~~~i~~~~~~p~gi~v~~ 296 (349)
T 3v64_C 272 NKFTGKNQEIIRNKLHFPMDIHTLH 296 (349)
T ss_dssp ETTTCCSCEEEECSCSCCCCEEEEC
T ss_pred EccCCCccEEeccCCCCCceEEEEc
Confidence 9778877777765444555666543
No 261
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=2.9e-06 Score=75.29 Aligned_cols=227 Identities=9% Similarity=0.006 Sum_probs=134.7
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecC--------------------CCCeeEEEECC-CCcEEEEeccCCCE
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLP--------------------AEPIKPIAANS-HGTYIAGGGQSGDI 104 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--------------------~~~v~~~~~~~-~~~~l~~~~~dg~i 104 (451)
+.+++.++.++..+ +.|..|+..+......... ...+..+++.+ +++++++ ...+.|
T Consensus 26 ~d~~g~~l~v~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~~i 103 (322)
T 2fp8_A 26 FDSTNKGFYTSVQD-GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYYHL 103 (322)
T ss_dssp CCTTCSSEEEECTT-SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTTEE
T ss_pred EcCCCCEEEEEcCC-CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCCCE
Confidence 77888867766666 8999999876554322110 13578899997 6665554 334458
Q ss_pred EEEEcCCCcceeee---cc-ccCCeeEEEEcc-CCcEEEEeeC-----------------CCcEEEeeCcchhhhhhhhc
Q 012996 105 YMWEVASGRLLKKW---HA-HYRAVTCLVFSE-DGSFLISGSE-----------------DGCVRIWSLLTVFEECESQR 162 (451)
Q Consensus 105 ~iwd~~~~~~~~~~---~~-~~~~v~~~~~~~-~~~~l~s~~~-----------------dg~i~vwd~~~~~~~~~~~~ 162 (451)
..+|..++...... .+ .......+++.+ +|++.++-.. ++.|..||..++.
T Consensus 104 ~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~------- 176 (322)
T 2fp8_A 104 SVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE------- 176 (322)
T ss_dssp EEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE-------
T ss_pred EEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE-------
Confidence 88887655432111 11 123568899999 8987665432 3667777764311
Q ss_pred ccccceecccCCcCceeEEEEeecCCeeEEE-EeeCCCcEEEEEcCCCc--eeeee-ecccceeEEEECCCCCEEEEEeC
Q 012996 163 ASHLYLHSFTGHTLRITDIVIGYGGVSATIV-SASEDRTCKVWSLLKGR--LLRNI-VFPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 163 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
...+.........+++++++ +.|+ +-+..+.|..|++.... ....+ ..+. ...++++++|++.++...
T Consensus 177 -----~~~~~~~~~~p~gia~~~dg--~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 -----TTLLLKELHVPGGAEVSADS--SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp -----EEEEEEEESCCCEEEECTTS--SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred -----EEEeccCCccCcceEECCCC--CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 11111111234578898887 5554 44566899999987421 11112 2334 788999999986665544
Q ss_pred ----------CCcEEEEEccCCCCCCCCCCceeeeeeccC----CcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996 239 ----------DGSIYIAALNAESPSTSSYGMHIIGSLSDH----SKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 239 ----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~ 299 (451)
.+.|..+|... ..+..+... ...++++++..+.++++...++.|..+++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 45677887643 223233222 2356667664365666666778898888753
No 262
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=2.1e-05 Score=78.91 Aligned_cols=310 Identities=12% Similarity=0.030 Sum_probs=179.7
Q ss_pred CCCeEEEECccCceeeeeecCC---CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee--------cCC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCA---SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS--------LPA 80 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~--------~~~ 80 (451)
++.|..+|..+++.. .+.... -+...|.++. ..++|.+.+. ..+ +.|..|+..+....... ...
T Consensus 136 ~~gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~--~d~~g~lwig-t~~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 210 (781)
T 3v9f_A 136 YRGIEYLDIATGKFT-HYNKSTVPALPSEQTWTAT--EAEDGKLYIG-HVE-GGLSILSLNDKSVKHFVHDPQNPNSLPG 210 (781)
T ss_dssp SSCEEEEETTTTEEE-EESTTTCTTCSCCCEEEEE--EEETTEEEEE-ETT-TEEEEEETTTTEEEEECC--------CC
T ss_pred CCCeeEEECCCCeEE-eeccCcccCCCccceEEEE--ECCCCCEEEE-ecC-CCeEEEcCCCCceEeeecCCCCcccCCC
Confidence 456788887665543 232111 1224466665 5566666553 333 46888998776543221 124
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec-------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcc
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH-------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~ 153 (451)
..|.++...++|.+.+. +.+ -+.+||..+++...... .....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 57999999888876654 444 58999987665432211 1245689998888776 55566656688888754
Q ss_pred hhhhhhhhcccc----cceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeee-------e---ccc
Q 012996 154 VFEECESQRASH----LYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNI-------V---FPS 219 (451)
Q Consensus 154 ~~~~~~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-------~---~~~ 219 (451)
..-..... ... ............|.++....++ .|..|+.++-|..++..++...... . ...
T Consensus 288 ~~~~~~~~-~~f~~~~~~~~~~~l~~~~v~~i~~D~~g---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 288 NQFLLPEQ-IRFEFIREGDNNYSLSNASARYIFQDSFN---NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp C----------CEEECBCSSTTSBSSSCEEEEEECSSC---CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred Ceeeeeec-cccccccCCCCCCCCCCCeEEEEEEeCCC---CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 21100000 000 0000011234568888776665 5677777778999998765432211 0 235
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeee-eeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996 220 VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 220 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 298 (451)
.|.+++..+++. |.+|+.++-|..|+..+... .... ........|.++...+...|..|+.++-|..+|..
T Consensus 364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA-------IYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTR 435 (781)
T ss_dssp CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-------ECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSS
T ss_pred ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-------EEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCC
Confidence 688999888775 55677667788898765321 0000 00123467889988773445557766678999987
Q ss_pred CCceEEEee--cCCCCeeEEEEEecCceeeeccCCCCccccccCCCC
Q 012996 299 THNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQ 343 (451)
Q Consensus 299 ~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~ 343 (451)
+++...... .....|.++...++|.+.+.. . +.+..++..+..
T Consensus 436 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 436 LKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-H-AGVFVIDLASKK 480 (781)
T ss_dssp SCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-T-TEEEEEESSSSS
T ss_pred CCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-C-CceEEEeCCCCe
Confidence 765432211 234679999988888755544 3 446667665443
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.83 E-value=1.9e-05 Score=72.14 Aligned_cols=242 Identities=10% Similarity=-0.043 Sum_probs=150.3
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEcc-CC
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSE-DG 134 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~-~~ 134 (451)
..|+..++..............+..|+|++.+..| .+-...+.|+.+++... .....+.........+++.+ .+
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 56777777766555555456788999999865555 44455678988987652 22333333445678899987 55
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC-CCcEEEEEcCCCceee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-DRTCKVWSLLKGRLLR 213 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~ 213 (451)
+++++-...+.|.+.++.. ......+........+|++.|.+. .++++-.. .+.|...++.......
T Consensus 172 ~lY~~d~~~~~I~~~~~~g-----------~~~~~l~~~~~~~P~~iavdp~~g-~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETTTTEEEEECTTT-----------CSEEEEEECSSCCEEEEEEETTTT-EEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ceEEEECCCCeEEEEeCCC-----------CceEEEEeCCCCCcceEEEecccC-eEEEEeCCCCCEEEEEeCCCCccEE
Confidence 5555656678899998843 111111222334567899988652 34444322 4788888876433222
Q ss_pred eee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996 214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM 291 (451)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~ 291 (451)
.+. .-.....++++|++..|+.+. ..+.|..+|+..... ..+...........++++..+.++++-...+.
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 312 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEETTEEEEEESSSCS
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCe
Confidence 222 225678999999877777664 457899999876431 22222212234456777754667777777888
Q ss_pred EEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 292 VRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
|..+|..+++.+..+........++.....
T Consensus 313 V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~ 342 (400)
T 3p5b_L 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHN 342 (400)
T ss_dssp EEEEESSSCCCCEEEECSCSCEEEEEEESG
T ss_pred EEEEEcCCCCceEEEecCCCCCceEEEEee
Confidence 999998888888877755555666665543
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.80 E-value=9.7e-06 Score=71.30 Aligned_cols=236 Identities=13% Similarity=0.059 Sum_probs=133.8
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCccee
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLK 116 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~ 116 (451)
...++ |.++++++++-... +.|..||....... .......+..+++.++|+++++..... .|..++..+++...
T Consensus 34 pegia--~~~~g~lyv~d~~~-~~I~~~d~~g~~~~-~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 34 LENLA--SAPDGTIFVTNHEV-GEIVSITPDGNQQI-HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp EEEEE--ECTTSCEEEEETTT-TEEEEECTTCCEEE-EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred cceEE--ECCCCCEEEEeCCC-CeEEEECCCCceEE-EEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 44555 88888866655455 89999998764332 222346789999999999766543322 37777777776543
Q ss_pred eec-cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEe
Q 012996 117 KWH-AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSA 195 (451)
Q Consensus 117 ~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~ 195 (451)
... ........++..+++..+++-..++.|.++|................ .......-.....+ ++++. .++++-
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~-~~~~~~~~~~pngi--s~dg~-~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA-RSNSESVFPAANGL--KRFGN-FLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS-CSSTTCCSCSEEEE--EEETT-EEEEEE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc-cccccCCCCcCCCc--CcCCC-EEEEEe
Confidence 222 11223345555555555555545788888887431000000000000 00001111233445 66652 455566
Q ss_pred eCCCcEEEEEcCC-Cce--eeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 196 SEDRTCKVWSLLK-GRL--LRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 196 ~~d~~i~iwd~~~-~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
...+.|..|++.. ++. ...+........++++++|+++++....+.|.++|..... ..+..+.......
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~~--------~~~~~~~~~~~~p 257 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGS 257 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCCCCE--------EEEeecccccCCc
Confidence 6778999999874 332 1122222346778999999877776677899999865311 1122232233568
Q ss_pred eEEEEe---c-CCEEEEEcCCC
Q 012996 273 TCLAYS---T-GDLLISGSEDG 290 (451)
Q Consensus 273 ~~~~~~---~-~~~l~s~~~dg 290 (451)
++++|. | ++.|+.++..+
T Consensus 258 ~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 258 TAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEEECCSTTTTTEEEEEECTT
T ss_pred eEEEEecccCCCCEEEEECCCC
Confidence 899998 7 56666555443
No 265
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.79 E-value=3.2e-07 Score=89.95 Aligned_cols=256 Identities=11% Similarity=0.004 Sum_probs=138.3
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-C-CCCeeEEEECCC
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-P-AEPIKPIAANSH 91 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~-~~~v~~~~~~~~ 91 (451)
.+.+||..+++....-.....+.......+ +.++++.++.||.++..+.+||..+........ + ...-.+++..++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~--~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d 297 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGIS--MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD 297 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEE--ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCcccccc--CCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence 588999888764322111111111112233 678899999999766799999988765433221 1 222245566778
Q ss_pred CcEEEEec-cC-----CCEEEEEcCCCcceeee----ccccCCeeEEEEccCCcEEEEeeCCC---------cEEEeeCc
Q 012996 92 GTYIAGGG-QS-----GDIYMWEVASGRLLKKW----HAHYRAVTCLVFSEDGSFLISGSEDG---------CVRIWSLL 152 (451)
Q Consensus 92 ~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg---------~i~vwd~~ 152 (451)
+++++.|+ .+ ..+.+||..+++-...- ......-....+..++..++.|+.+| .+..||..
T Consensus 298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 99999988 34 46999998776432210 00000000011223444555554444 45677775
Q ss_pred chhhhhhhhcccccceecccC------CcCceeEEEEee-cCCeeEEEEeeCCC-----------cEEEEEcCCCceeee
Q 012996 153 TVFEECESQRASHLYLHSFTG------HTLRITDIVIGY-GGVSATIVSASEDR-----------TCKVWSLLKGRLLRN 214 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~~i~~~~-~~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~ 214 (451)
+..- ......... ....-.++.+.. ++ .+++.|+.++ .+.+||..+......
T Consensus 378 ~~~w--------~~~~~~~~~~~~~~~~~~~~~av~~~~~~~--~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 447 (656)
T 1k3i_A 378 GSGD--------VKSAGKRQSNRGVAPDAMCGNAVMYDAVKG--KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVF 447 (656)
T ss_dssp TTCE--------EEEEEECEETTEECCCCBTCEEEEEETTTT--EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEE
T ss_pred Ccce--------eecCCccccccccCCCCCCCceEeccCCCC--eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEE
Confidence 4210 000000000 011122333322 33 7888887543 678888877654433
Q ss_pred e----ecccceeEEEECCCCCEEEEEeCC-----------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec
Q 012996 215 I----VFPSVIDAIALDPAEHVFYAGSRD-----------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST 279 (451)
Q Consensus 215 ~----~~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 279 (451)
. ..+..-.+++..|+++++++|+.+ ..+.+||..+.. +..+..+........+..+.|
T Consensus 448 ~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~-------W~~~~~~~~~R~~hs~a~ll~ 520 (656)
T 1k3i_A 448 ASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT-------FYKQNPNSIVRVYHSISLLLP 520 (656)
T ss_dssp CTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE-------EEECCCCSSCCCTTEEEEECT
T ss_pred ccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc-------eeecCCCCCccccccHhhcCC
Confidence 2 223334566778899999999864 468999987653 222222222222333444556
Q ss_pred -CCEEEEEcC
Q 012996 280 -GDLLISGSE 288 (451)
Q Consensus 280 -~~~l~s~~~ 288 (451)
+++++.|+.
T Consensus 521 dg~v~v~GG~ 530 (656)
T 1k3i_A 521 DGRVFNGGGG 530 (656)
T ss_dssp TSCEEEEECC
T ss_pred CcEEEecCCC
Confidence 889998885
No 266
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.79 E-value=1.8e-06 Score=71.60 Aligned_cols=192 Identities=11% Similarity=0.090 Sum_probs=122.3
Q ss_pred eeeeeecCCCCCCceEEecceEeeccCcccCCCCC-CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEE-EEeccCC
Q 012996 25 EQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS-SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYI-AGGGQSG 102 (451)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg 102 (451)
.+.++ .|. +..-...+. |++ +.+..++|.. ...|+++|+.+++......-..........+.++.| ...-.++
T Consensus 11 v~~~~-phd-~~~ftqGL~--~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRY-PHD-TTAFTEGLF--YLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH 85 (243)
T ss_dssp EEEEE-ECC-TTCCEEEEE--EET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEc-CCC-CccccccEE--EEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC
Confidence 44455 332 223344455 765 5555555553 258999999999987665544454444333334444 4445678
Q ss_pred CEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC--Cc---Cc
Q 012996 103 DIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG--HT---LR 177 (451)
Q Consensus 103 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~---~~ 177 (451)
.+.+||..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+. ..+..+.- +. ..
T Consensus 86 ~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~-----------~~~~~I~V~~~g~~~~~ 151 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTL-----------QQVGSIKVTAGGRPLDN 151 (243)
T ss_dssp EEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTC-----------CEEEEEECEETTEECCC
T ss_pred EEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCC-----------eEEEEEEEccCCccccc
Confidence 9999999999999988643322 4454 45666666666889999998652 22222221 21 23
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~ 238 (451)
++.+.+. ++ ...+..-.+..|.+.|..+++.+..+... ...+.++++|+++.|++.+.
T Consensus 152 lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 152 LNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 4455554 44 55555546889999999999998887622 24688999998777776654
No 267
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.76 E-value=1.7e-06 Score=72.22 Aligned_cols=172 Identities=11% Similarity=0.070 Sum_probs=115.1
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeE--EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccC
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKP--IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYR 123 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 123 (451)
|+ ++.+..+.+.+ |.|+++|+.+++..... ....... +++..+ ++.++.-.++.+.+||..+.+.+.++....
T Consensus 62 ~~-~~~Ly~stG~~-g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~- 136 (268)
T 3nok_A 62 FH-QGHFFESTGHQ-GTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSG- 136 (268)
T ss_dssp EE-TTEEEEEETTT-TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSS-
T ss_pred EE-CCEEEEEcCCC-CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCC-
Confidence 65 34555555555 88999999999877655 3344444 555433 333444568899999999999999886432
Q ss_pred CeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceeccc--CCc---CceeEEEEeecCCeeEEEEeeCC
Q 012996 124 AVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT--GHT---LRITDIVIGYGGVSATIVSASED 198 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~i~~~~~~~~~~l~s~~~d 198 (451)
.-..++ +|++.|+.+..++.|.++|..+. ..+..+. .+. ..++.+.|. ++ ...+....+
T Consensus 137 eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~-----------~v~~~I~V~~~g~~v~~lNeLe~~-dG--~lyanvw~s 200 (268)
T 3nok_A 137 EGWGLC--YWNGKLVRSDGGTMLTFHEPDGF-----------ALVGAVQVKLRGQPVELINELECA-NG--VIYANIWHS 200 (268)
T ss_dssp CCCCEE--EETTEEEEECSSSEEEEECTTTC-----------CEEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTC
T ss_pred ceeEEe--cCCCEEEEECCCCEEEEEcCCCC-----------eEEEEEEeCCCCcccccccccEEe-CC--EEEEEECCC
Confidence 223444 45777777777889999998653 2222221 122 234566665 44 555555568
Q ss_pred CcEEEEEcCCCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996 199 RTCKVWSLLKGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~ 238 (451)
..|.+.|..+++.+..+... ...+.++++|+++.|++.+.
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 89999999999999888732 25688999998776666553
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=4.3e-06 Score=80.15 Aligned_cols=240 Identities=10% Similarity=0.054 Sum_probs=140.1
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCC-----CCCccEEEEECCCCceeeeec
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPS-----ASSGSILYWSWSKPQVEVKSL 78 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~-----~d~g~i~vw~~~~~~~~~~~~ 78 (451)
|+.++ .|+.|..+|..+|+.+......... ...+.+.. ...++..++.++ .+ |.|+-+|..+++...+..
T Consensus 124 V~v~t-~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP--~v~~g~V~vg~~g~e~g~~-g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 124 ILKTQ-LDGNVAALNAETGETVWKVENSDIKVGSTLTIAP--YVVKDKVIIGSSGAELGVR-GYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp EEEEC-TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC--EEETTEEEECCBCGGGTCC-CEEEEEETTTCCEEEEEE
T ss_pred EEEEc-CCCEEEEEECCCCCEEEeecCCCCCccceeecCC--EEECCEEEEEecccccCCC-CeEEEEECCCCcEEEEEc
Confidence 56677 7899999999999998776543210 01222211 223444443332 24 899999999998876544
Q ss_pred CCCCe---------------------------------------eEEEECCCCcEEEEeccC----------------CC
Q 012996 79 PAEPI---------------------------------------KPIAANSHGTYIAGGGQS----------------GD 103 (451)
Q Consensus 79 ~~~~v---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~ 103 (451)
...+. ..+++.+....+..+..+ +.
T Consensus 200 ~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~s 279 (599)
T 1w6s_A 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (599)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccce
Confidence 32211 134566677777776655 37
Q ss_pred EEEEEcCCCcceeeecccc----------CCeeEEEEc-cCC---cEEEEeeCCCcEEEeeCcchhhhhhhhccc-----
Q 012996 104 IYMWEVASGRLLKKWHAHY----------RAVTCLVFS-EDG---SFLISGSEDGCVRIWSLLTVFEECESQRAS----- 164 (451)
Q Consensus 104 i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~-~~~---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----- 164 (451)
|..+|..+|+.+..++... .++. +... .+| ..++.++.+|.+.++|..++..........
T Consensus 280 v~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~ 358 (599)
T 1w6s_A 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (599)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccc
Confidence 9999999999887765321 1221 2222 467 567788899999999997764322111000
Q ss_pred -------ccceec--------------ccCCc--CceeEEEEeecCCeeEEEE---------------------------
Q 012996 165 -------HLYLHS--------------FTGHT--LRITDIVIGYGGVSATIVS--------------------------- 194 (451)
Q Consensus 165 -------~~~~~~--------------~~~~~--~~i~~i~~~~~~~~~~l~s--------------------------- 194 (451)
..++.. +.+.. ..-..++++|.. .++++
T Consensus 359 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~--~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR--ELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT--TEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC--CEEEEeccccceeeecccccccCCcceecccc
Confidence 000000 00000 000112233222 11111
Q ss_pred ------ee------CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 195 ------AS------EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 195 ------~~------~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
.+ ..|.|..||+.+++.+.......+...-.+...+..+++++.||.++.||.++++
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 01 4578999999999998887654333221222356788889999999999999985
No 269
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.72 E-value=5.3e-06 Score=79.58 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=158.9
Q ss_pred ccCcccCCCCCCccEEEEECCCCceeeeecCCCCe----------eEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996 49 SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPI----------KPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 118 (451)
++..+ +++.+ +.|.-+|..+++........... ..+++ .+..+++++.++.|.-+|..+|+.+...
T Consensus 68 ~g~vy-v~~~~-~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 68 DGVIY-VTASY-SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp TTEEE-EEETT-TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred CCEEE-EEcCC-CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 34433 33333 33888999888877665432211 11222 2556777888999999999999988766
Q ss_pred ccccC----Cee-EEEEcc---CCc-EEEEee------CCCcEEEeeCcchhhhhhhhcccccce---------------
Q 012996 119 HAHYR----AVT-CLVFSE---DGS-FLISGS------EDGCVRIWSLLTVFEECESQRASHLYL--------------- 168 (451)
Q Consensus 119 ~~~~~----~v~-~~~~~~---~~~-~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~--------------- 168 (451)
..... .+. ...... +++ .+++++ .+|.|..+|..++.......... ..+
T Consensus 144 ~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~-~~~~p~~~~~~~~~g~~g 222 (582)
T 1flg_A 144 KFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE-GHMGRLNGKDSTVTGDVK 222 (582)
T ss_dssp ECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST-TCEEEETTEEEEESSCTT
T ss_pred cCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCc-cccccccCcccccccccc
Confidence 43220 111 111111 233 566654 37899999998765432211100 000
Q ss_pred -e--------------ccc-CCcCceeEEEEeecCCeeEEEEeeC--------------------C----CcEEEEEcCC
Q 012996 169 -H--------------SFT-GHTLRITDIVIGYGGVSATIVSASE--------------------D----RTCKVWSLLK 208 (451)
Q Consensus 169 -~--------------~~~-~~~~~i~~i~~~~~~~~~~l~s~~~--------------------d----~~i~iwd~~~ 208 (451)
. ... +....-..+++.+.. ..++.++. | +.|..+|..+
T Consensus 223 ~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~--g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 223 APSWPDDRNSPTGKVESWSHGGGAPWQSASFDAET--NTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp CTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTT--TEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccCCCccccccccccccccCCccccCCceEcCCC--CEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 0 000 000001223444444 45555442 2 5899999999
Q ss_pred Cceeeeeecc-c---------ceeEEEEC-CCC---CEEEEEeCCCcEEEEEccCCCCCCCCCC--------------ce
Q 012996 209 GRLLRNIVFP-S---------VIDAIALD-PAE---HVFYAGSRDGSIYIAALNAESPSTSSYG--------------MH 260 (451)
Q Consensus 209 ~~~~~~~~~~-~---------~i~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------~~ 260 (451)
|+.+..+... . ...-+... .+| ..++.++.+|.++++|..+++....... .+
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~ 380 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGR 380 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCC
T ss_pred CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCC
Confidence 9998887631 1 11111221 456 4788899999999999988754211000 00
Q ss_pred eee--------------------eeccCC--cceeEEEEec-CCEEEEEc------------------------------
Q 012996 261 IIG--------------------SLSDHS--KAVTCLAYST-GDLLISGS------------------------------ 287 (451)
Q Consensus 261 ~~~--------------------~~~~~~--~~v~~~~~~~-~~~l~s~~------------------------------ 287 (451)
++. ...+.. ..-..++++| ..++++..
T Consensus 381 p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~ 460 (582)
T 1flg_A 381 PVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM 460 (582)
T ss_dssp EEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES
T ss_pred EeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCC
Confidence 000 000000 0011345666 33333321
Q ss_pred ---CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCCCCCC
Q 012996 288 ---EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGSQLP 345 (451)
Q Consensus 288 ---~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~~~~ 345 (451)
.+|.|.-||+.+++.+-+...+ .++..-.....+..++.++.||.++.+|..+++..
T Consensus 461 ~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 461 YDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp CSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence 3688999999999998877653 23333333345667888999999999998876543
No 270
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.66 E-value=1.5e-06 Score=85.18 Aligned_cols=241 Identities=10% Similarity=0.065 Sum_probs=135.4
Q ss_pred eEEEECC-CCcEEEEeccCC-----------CEEEEEcCCCcce--eeec-cccCCeeEEEEccCCcEEEEeeC-CCcEE
Q 012996 84 KPIAANS-HGTYIAGGGQSG-----------DIYMWEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE-DGCVR 147 (451)
Q Consensus 84 ~~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~-dg~i~ 147 (451)
..+++.+ ++++++.|+.+. .+.+||..+++.. ..+. .+.....++++..++++++.|+. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 4666777 888888887543 5889999877532 2222 23334456788889999999984 45799
Q ss_pred EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC-----CcEEEEEcCCCceeee-----ee
Q 012996 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-----RTCKVWSLLKGRLLRN-----IV 216 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~~-----~~ 216 (451)
+||..+. ....+..+..... -.+++..+++ .+++.|+ .+ ..+.+||..+++-... ..
T Consensus 269 ~yd~~t~---------~W~~~~~~~~~R~-~~s~~~~~dg--~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p 336 (656)
T 1k3i_A 269 LYDSSSD---------SWIPGPDMQVARG-YQSSATMSDG--RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 336 (656)
T ss_dssp EEEGGGT---------EEEECCCCSSCCS-SCEEEECTTS--CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGG
T ss_pred EecCcCC---------ceeECCCCCcccc-ccceEEecCC--eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccc
Confidence 9998652 1111111111111 1233444455 7888887 34 5699999987654322 01
Q ss_pred cccceeEEEECCCCCEEEEEeCCC---------cEEEEEccCCCCCCCCCCceeeeeecc------CCcceeEEEEec--
Q 012996 217 FPSVIDAIALDPAEHVFYAGSRDG---------SIYIAALNAESPSTSSYGMHIIGSLSD------HSKAVTCLAYST-- 279 (451)
Q Consensus 217 ~~~~i~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~-- 279 (451)
....-....+..++..++.|+.+| .+..||..+..- ......... ....-.++.+..
T Consensus 337 ~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w------~~~~~~~~~~~~~~~~~~~~~av~~~~~~ 410 (656)
T 1k3i_A 337 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD------VKSAGKRQSNRGVAPDAMCGNAVMYDAVK 410 (656)
T ss_dssp GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE------EEEEEECEETTEECCCCBTCEEEEEETTT
T ss_pred cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcce------eecCCccccccccCCCCCCCceEeccCCC
Confidence 111100112334566666665554 456777765431 011111100 011234455544
Q ss_pred CCEEEEEcCCC-----------cEEEEeCCCCceEEEe--ecCCCCe-eEEEEEecCceeeeccCC-----------CCc
Q 012996 280 GDLLISGSEDG-----------MVRVWDPITHNIVRMF--RLAKGPV-NNILVVRRPLYLNLGSFS-----------NPH 334 (451)
Q Consensus 280 ~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~--~~~~~~v-~~l~~s~~~~~l~~~s~d-----------~~i 334 (451)
+.+++.|+.++ .|.+||..+..-.... ..+.... .+.+..|+++.++.|+.+ ..+
T Consensus 411 ~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v 490 (656)
T 1k3i_A 411 GKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490 (656)
T ss_dssp TEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCC
T ss_pred CeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccce
Confidence 77778887543 6888998776544433 2233332 445667899999999865 346
Q ss_pred cccccCCC
Q 012996 335 TSSRRHGS 342 (451)
Q Consensus 335 ~iw~~~~~ 342 (451)
.+||....
T Consensus 491 ~~ydp~t~ 498 (656)
T 1k3i_A 491 EIYVPEQD 498 (656)
T ss_dssp EEEEGGGT
T ss_pred EEEcCCCC
Confidence 77776543
No 271
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.64 E-value=4.7e-05 Score=67.06 Aligned_cols=238 Identities=10% Similarity=-0.045 Sum_probs=146.4
Q ss_pred ccEEEEECCCCc--eeeeecCCCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcce-eeeccccCCeeEEEEcc-CCc
Q 012996 61 GSILYWSWSKPQ--VEVKSLPAEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLL-KKWHAHYRAVTCLVFSE-DGS 135 (451)
Q Consensus 61 g~i~vw~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~~-~~~ 135 (451)
..|+..+++... ..........+..++|.+. +.++.+-...+.|..+++..+... ..+.........+++.+ .+.
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ 92 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK 92 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence 678888887653 2222222345778999985 445555556778999998765422 22222334567899987 455
Q ss_pred EEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceee
Q 012996 136 FLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLR 213 (451)
Q Consensus 136 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~ 213 (451)
++++-...+.|.++++... ..............++++.+.+ ..|+.+. ..+.|...++.. ....
T Consensus 93 ly~~d~~~~~I~~~~~dG~-----------~~~~l~~~~~~~P~giavdp~~--g~ly~td~~~~~~I~r~~~dG-~~~~ 158 (318)
T 3sov_A 93 LYWTDSETNRIEVSNLDGS-----------LRKVLFWQELDQPRAIALDPSS--GFMYWTDWGEVPKIERAGMDG-SSRF 158 (318)
T ss_dssp EEEEETTTTEEEEEETTSC-----------SCEEEECSSCSSEEEEEEEGGG--TEEEEEECSSSCEEEEEETTS-CSCE
T ss_pred EEEEECCCCEEEEEECCCC-----------cEEEEEeCCCCCccEEEEeCCC--CEEEEEecCCCCEEEEEEcCC-CCeE
Confidence 5556556778999998431 1111112333456789998764 3444444 357888888753 3222
Q ss_pred eee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996 214 NIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 214 ~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
.+. .-.....++++|++..|+.+ +..+.|..+|+..... ..+ ..+.......+++..+.++++-...+
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~--~~~~~~~P~glav~~~~lywtd~~~~ 229 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAV--VKGSLPHPFALTLFEDILYWTDWSTH 229 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE--ECSCCSCEEEEEEETTEEEEEETTTT
T ss_pred EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEE--ecCCCCCceEEEEeCCEEEEEecCCC
Confidence 322 22456899999977766665 4567899999875321 111 12234456777776566677767788
Q ss_pred cEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 291 MVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 291 ~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
.|..++..+++....+........+++....
T Consensus 230 ~V~~~~~~~G~~~~~i~~~~~~P~~i~v~~~ 260 (318)
T 3sov_A 230 SILACNKYTGEGLREIHSDIFSPMDIHAFSQ 260 (318)
T ss_dssp EEEEEETTTCCSCEEEECCCSSCCCEEEECG
T ss_pred eEEEEECCCCCceEEEeCCCCCCcEEEEecc
Confidence 9999999888877777654444555555433
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.64 E-value=2.1e-05 Score=66.10 Aligned_cols=202 Identities=10% Similarity=0.118 Sum_probs=132.7
Q ss_pred CCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 34 SPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 34 ~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
+-...+..++ |.|++..|.+....++.|...|.. +.+..... .......|++.+++.++++.-.++.+.++++..
T Consensus 24 g~~~~lSGla--~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 24 GITNNISSLT--WSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp TCCSCEEEEE--EETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CcccCcceeE--EeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 3335677777 999877776655555999999988 55544432 235788999999998777766678899998865
Q ss_pred Ccce---eeec------cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhccccccee----cccCCcCce
Q 012996 112 GRLL---KKWH------AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLH----SFTGHTLRI 178 (451)
Q Consensus 112 ~~~~---~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i 178 (451)
...+ .... ........++|+|.++.|+++.......+|.+...... ....... .-..+...+
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-----~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-----NELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS-----SCCEEEECHHHHHTCCSSCC
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC-----CceeeecchhhccccccCCc
Confidence 5422 2221 23445689999998877777777666666666410000 0000000 001123456
Q ss_pred eEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeecc----------cceeEEEECCCCCEEEEEeCCCcEEEEE
Q 012996 179 TDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFP----------SVIDAIALDPAEHVFYAGSRDGSIYIAA 246 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~i~i~d 246 (451)
.++++.|... .+++....++.+..+|.. ++.+..+... .....|+|+++|+ |++.+..+.++.|.
T Consensus 176 S~l~~dp~tg-~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 176 SGAEFNQQKN-TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CEEEEETTTT-EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred eeEEEcCCCC-eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 8899988753 777778888899999965 6666666633 2568999999997 55557777666664
No 273
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=0.00013 Score=65.15 Aligned_cols=233 Identities=10% Similarity=-0.058 Sum_probs=136.9
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhh
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~ 159 (451)
+..+|.+..++. +|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...
T Consensus 34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~----- 105 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS----- 105 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-----
T ss_pred CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCC-----
Confidence 344566666644 444433 3458888876554433333 334578999997555554 5456778988888431
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEe-
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGS- 237 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~- 237 (451)
..............++++.+.+. .++++-...+.|.+.++........+. .-.....++++|.+..|+...
T Consensus 106 ------~~~~~~~~~~~~p~glavd~~~g-~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~ 178 (349)
T 3v64_C 106 ------NVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178 (349)
T ss_dssp ------SCEEEECSSCSCCCEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC
T ss_pred ------CceEEEeCCCCCccEEEEecCCC-eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc
Confidence 11111122223456788886442 566666677899999986543322222 234578999999666665554
Q ss_pred CC-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEE-EEEcCCCcEEEEeCCCCceEEEeecCCCCee
Q 012996 238 RD-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLL-ISGSEDGMVRVWDPITHNIVRMFRLAKGPVN 314 (451)
Q Consensus 238 ~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 314 (451)
.. +.|..+++..... . ......-...+.|+++| +..| ++-...+.|..+|+........+........
T Consensus 179 ~~~~~I~r~~~dG~~~-------~--~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~ 249 (349)
T 3v64_C 179 GNTPRIEASSMDGSGR-------R--IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPF 249 (349)
T ss_dssp SSSCEEEEEETTSCSC-------E--ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred CCCCEEEEEeCCCCCc-------E--EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCce
Confidence 44 7888888876421 1 11112234678999998 5544 4445677899999865433333333344567
Q ss_pred EEEEEecCceeeeccCCCCccccc
Q 012996 315 NILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 315 ~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
.+++ ..+..+++-...+.|...+
T Consensus 250 giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 250 AITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEE-ECCEEEEecCCCCeEEEEE
Confidence 7888 3444555544556666555
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.61 E-value=0.0001 Score=66.91 Aligned_cols=233 Identities=10% Similarity=-0.064 Sum_probs=138.4
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-EEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-FLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
.-.|.+..+. .+|+.+. ...|+.+++.......... ....+..++|++.+. ++++-...+.|..+++...
T Consensus 78 ~~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~------ 148 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS------ 148 (386)
T ss_dssp SSCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC------
T ss_pred CCeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC------
Confidence 3445555553 3444433 3568888887665444443 345578999997544 4445556778988988431
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEECCCCCEEEEEeC-
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIALDPAEHVFYAGSR- 238 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~- 238 (451)
.....+........++++.+.+. .++++-...+.|.+.++........+. .......++++|.+..|+....
T Consensus 149 -----~~~~~~~~~~~~p~glavd~~~g-~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 149 -----NVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp -----CEEEEECSSCSCCCCEEEETTTT-EEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS
T ss_pred -----CcEEEEeCCCCCccEEEEEeCCC-eEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC
Confidence 11111122223446788876442 566666677889999886443322222 2256789999997776666543
Q ss_pred C-CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeE
Q 012996 239 D-GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNN 315 (451)
Q Consensus 239 d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 315 (451)
. +.|+.+++..... .......-...+.|+++| +. +.++-+..+.|..+|+........+.........
T Consensus 223 ~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~g 293 (386)
T 3v65_B 223 NTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA 293 (386)
T ss_dssp SSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEE
T ss_pred CCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceE
Confidence 3 6788888776421 111222334678999997 44 5555566788999998654333333333445677
Q ss_pred EEEEecCceeeeccCCCCcccccc
Q 012996 316 ILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 316 l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
|++ ..+..+++-...+.|..++.
T Consensus 294 iav-~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 294 ITV-FEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEET
T ss_pred EEE-ECCEEEEeeCCCCeEEEEEC
Confidence 888 44455555555666666663
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.60 E-value=0.00019 Score=63.25 Aligned_cols=218 Identities=9% Similarity=-0.028 Sum_probs=129.2
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC----Cceeeee-cCCCCeeEEE
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA 87 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~----~~~~~~~-~~~~~v~~~~ 87 (451)
..|+..|+.+.+....+.. ......++ |.+.+..+..+...++.|..++.+. ....... .....+..++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~----~~~p~g~~--~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN----LRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp SSEEEEETTSCCCEEEECS----CSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred CeEEEEECCCcceEehhcC----CCceEEEE--EEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 4799999987765544432 23445566 8887666665554448999999876 2222211 1224568899
Q ss_pred ECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-C-CcEEEeeCcchhhhhhhhccc
Q 012996 88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 88 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~ 164 (451)
+.+. +++.++-...+.|.++++........+.........+++.|.+..|+.+.. . +.|...++.. .
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG----------~ 153 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----------V 153 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS----------C
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC----------C
Confidence 9864 445555566788999997644333233333456789999986655554443 2 6788877632 1
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c---ccceeEEEECCCCCEEEEEeCCC
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F---PSVIDAIALDPAEHVFYAGSRDG 240 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~---~~~i~~~~~~~~~~~l~~~~~dg 240 (451)
. ........-.....+++++++. .+.++-+..+.|..+|+... ....+. . ......+++. .+..+++-...+
T Consensus 154 ~-~~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 154 D-IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp C-EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred C-eEEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 1 1111112234567899987652 45555556779999998643 233332 1 2345677774 355555555677
Q ss_pred cEEEEEccCC
Q 012996 241 SIYIAALNAE 250 (451)
Q Consensus 241 ~i~i~d~~~~ 250 (451)
.|..++..++
T Consensus 230 ~V~~~~~~~g 239 (316)
T 1ijq_A 230 AIFSANRLTG 239 (316)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEeCCCC
Confidence 8888887554
No 276
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.60 E-value=3.2e-05 Score=65.04 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=128.0
Q ss_pred eeccccCCeeEEEEccCCcEEE-EeeCCCcEEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEE
Q 012996 117 KWHAHYRAVTCLVFSEDGSFLI-SGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVS 194 (451)
Q Consensus 117 ~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s 194 (451)
.+.+-...+..++|+|++..|+ +...++.|...|.. ...+..+. .-.....++++..++ .++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~------------g~v~~~i~l~g~~D~EGIa~~~~g--~~~vs 86 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN------------GDLIRTIPLDFVKDLETIEYIGDN--QFVIS 86 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT------------CCEEEEEECSSCSSEEEEEECSTT--EEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC------------CCEEEEEecCCCCChHHeEEeCCC--EEEEE
Confidence 3445556899999999765554 56677888888873 22222221 112456778887665 66666
Q ss_pred eeCCCcEEEEEcCCCce---eeeee-------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 195 ASEDRTCKVWSLLKGRL---LRNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 195 ~~~d~~i~iwd~~~~~~---~~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
.-.++.+.++++..... +.... .+.....++|+|.++.|+++.......+|.++.. .... .......
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~~~~--~l~i~~~ 163 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-LSSN--ELHISKD 163 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-TCSS--CCEEEEC
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-ccCC--ceeeecc
Confidence 66778899998765442 22221 2334589999999988888877666566665521 0000 1111100
Q ss_pred ----eccCCcceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC---------CeeEEEEEecCceeeecc
Q 012996 265 ----LSDHSKAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG---------PVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 265 ----~~~~~~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~v~~l~~s~~~~~l~~~s 329 (451)
-..+...+.+++++| +.+++....+..|.++|.. ++.+..+....+ .--.|+|.++|+..++ +
T Consensus 164 ~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s 241 (255)
T 3qqz_A 164 KALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S 241 (255)
T ss_dssp HHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E
T ss_pred hhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c
Confidence 011345678999999 7788888888899999955 667766654322 5688999999975554 5
Q ss_pred CCCCcccc
Q 012996 330 FSNPHTSS 337 (451)
Q Consensus 330 ~d~~i~iw 337 (451)
.-+.++.+
T Consensus 242 E~n~~y~f 249 (255)
T 3qqz_A 242 EPNRFYRF 249 (255)
T ss_dssp TTTEEEEE
T ss_pred CCceEEEE
Confidence 65544433
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.57 E-value=3.5e-05 Score=67.33 Aligned_cols=201 Identities=14% Similarity=0.270 Sum_probs=130.5
Q ss_pred CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccC----CcE--E-E-EeeC--CCcEEEeeCcchhhhhhh
Q 012996 91 HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSED----GSF--L-I-SGSE--DGCVRIWSLLTVFEECES 160 (451)
Q Consensus 91 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l-~-s~~~--dg~i~vwd~~~~~~~~~~ 160 (451)
...+++.....+-+.+||+ +|+.+..+.. +.++.+..-|+ |+. + + +.-. +++|.+|++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~------ 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK------ 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT------
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC------
Confidence 4455655566778999999 8998888753 56677666552 222 2 3 3333 578999977321
Q ss_pred hcccccceeccc-------CCcCceeEEEE--eecCCeeEEEEeeCCCcEEEEEc-------CCCceeeeeecccceeEE
Q 012996 161 QRASHLYLHSFT-------GHTLRITDIVI--GYGGVSATIVSASEDRTCKVWSL-------LKGRLLRNIVFPSVIDAI 224 (451)
Q Consensus 161 ~~~~~~~~~~~~-------~~~~~i~~i~~--~~~~~~~~l~s~~~d~~i~iwd~-------~~~~~~~~~~~~~~i~~~ 224 (451)
.. .+..+. .-...+..+|+ ++.....++++...+|.+..|++ .+.+.++++...+.+..|
T Consensus 110 ---~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc 185 (355)
T 3amr_A 110 ---NG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM 185 (355)
T ss_dssp ---TC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred ---CC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence 01 122221 11156677787 44332247888889999999988 244677888888999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec-cC-CcceeEEEEec---CC-EEEEEc-CCCcEEEEeC
Q 012996 225 ALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS-DH-SKAVTCLAYST---GD-LLISGS-EDGMVRVWDP 297 (451)
Q Consensus 225 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~---~~-~l~s~~-~dg~i~iwd~ 297 (451)
..++....|+++-.+.-|..|+....... ....+.... ++ ...+..|++-+ +. +|++++ .++++.+||.
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 99999999999999877766665432210 012333331 22 24688888853 33 666666 5779999999
Q ss_pred C-CCceEEEeec
Q 012996 298 I-THNIVRMFRL 308 (451)
Q Consensus 298 ~-~~~~~~~~~~ 308 (451)
. +.+.+..|..
T Consensus 262 ~~~~~~vg~f~I 273 (355)
T 3amr_A 262 QGKNKYVADFRI 273 (355)
T ss_dssp STTCCEEEEEEE
T ss_pred CCCCcEEEEEEe
Confidence 6 6777777763
No 278
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=1.3e-05 Score=79.73 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=111.3
Q ss_pred ceEEecceEe-eccCcccCCCCCC----ccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEeccC-----CCEEE
Q 012996 38 GLACVGQRFL-ASSQLREQPSASS----GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQS-----GDIYM 106 (451)
Q Consensus 38 ~v~~~~~~~~-~~~~~l~~~~~d~----g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i 106 (451)
.+.... || |+|+++|.+...+ ..|+++|+.++ +...... ......++|+|||+.|+....+ ..|++
T Consensus 175 ~~~~~~--~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~-~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVK--PAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV-SGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEE--ECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE-EEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeE--ecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc-cCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 455556 99 9999988543321 46999999987 5321111 1124578999999888877664 25888
Q ss_pred EEcCCCcce--eeec-cccCCeeEEEEccCCcEEEEeeC---CCcEEEeeCcchhhhhhhhcccccc--eecccCCcCce
Q 012996 107 WEVASGRLL--KKWH-AHYRAVTCLVFSEDGSFLISGSE---DGCVRIWSLLTVFEECESQRASHLY--LHSFTGHTLRI 178 (451)
Q Consensus 107 wd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i 178 (451)
+++.++... ..+. ........+.|+|||++|+..+. ...|.++|+.+. .... ...........
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~---------~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG---------NAHNTLEIVRPREKGVR 322 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC---------TTCCCEEESSCCCTTCC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC---------CCCceeEEeecCCCCce
Confidence 888776432 2222 22344667899999998886553 345788888542 1111 11222233444
Q ss_pred eEEEEeecCCeeEEEEeeCC----CcEEEEEcCCC-ceee-eeeccc--ceeEEEECCCCCEEEEEeCCCc--EEEEEc
Q 012996 179 TDIVIGYGGVSATIVSASED----RTCKVWSLLKG-RLLR-NIVFPS--VIDAIALDPAEHVFYAGSRDGS--IYIAAL 247 (451)
Q Consensus 179 ~~i~~~~~~~~~~l~s~~~d----~~i~iwd~~~~-~~~~-~~~~~~--~i~~~~~~~~~~~l~~~~~dg~--i~i~d~ 247 (451)
.++.|+.++ .+++.+..+ ..|..+|+.++ .... .+.+.. .+..+.+. .+.++++...++. |+++++
T Consensus 323 ~s~~~~~g~--~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTS--HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTT--EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCC--EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 555443333 455555443 35677777642 2222 233322 45556665 3445556666775 555564
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.55 E-value=2.7e-05 Score=71.78 Aligned_cols=239 Identities=7% Similarity=0.004 Sum_probs=134.5
Q ss_pred CeeEEEECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCC-C----cEEEeeCcchh
Q 012996 82 PIKPIAANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSED-G----CVRIWSLLTVF 155 (451)
Q Consensus 82 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g----~i~vwd~~~~~ 155 (451)
....|+++| ++..|.++...+.|+.+|+..+...... ........++|++++++|+.+... + .+.+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-- 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-- 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC--
Confidence 567899998 4555655555578999998766544333 345567899999999966665542 2 233333211
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCE
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHV 232 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~ 232 (451)
.......+. ......++++++ ++ .++++-..++.|..++...+....... .......++|+|++++
T Consensus 215 --------~~~~~~~l~-~~~~p~giavdp~~g--~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~ 283 (430)
T 3tc9_A 215 --------GFKVITELT-KGQNCNGAETHPING--ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283 (430)
T ss_dssp --------TSCSEEEEE-ECSSCCCEEECTTTC--CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSE
T ss_pred --------ceeeeeeec-cCCCceEEEEeCCCC--EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCE
Confidence 111001111 122345677888 44 566666678899999987665422222 2235778999999996
Q ss_pred EEEE-eCCCcEEEEEccCCCCCCCCCCceeeeee------------ccCCccee-EEEEe--------c-CCEEEEEcCC
Q 012996 233 FYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL------------SDHSKAVT-CLAYS--------T-GDLLISGSED 289 (451)
Q Consensus 233 l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~------------~~~~~~v~-~~~~~--------~-~~~l~s~~~d 289 (451)
|+++ ...+.|+.++.......... ...+... ...-.... .++.. + +.++++-...
T Consensus 284 lyv~d~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 284 AYIVVVNQHYILRSDYDWKTKRLTT--PYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp EEEEETTTTEEEEEEEETTTTEECC--CEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred EEEEECCCCEEEEEeCCcccccccc--eEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 6555 46678999887643100000 0000000 00011223 45553 3 4555555567
Q ss_pred CcEEEEeCCCCceEEEeecC------------------CCCeeEEEEEec-CceeeeccCCCCccccc
Q 012996 290 GMVRVWDPITHNIVRMFRLA------------------KGPVNNILVVRR-PLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~s~~-~~~l~~~s~d~~i~iw~ 338 (451)
+.|+.++ .++.... +.+. -..-..|+++|+ +.++++-...+.|+..+
T Consensus 362 ~~I~~i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 362 HCIRILT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp TEEEEEC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred cEEEEEC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 7888888 4564333 2221 114678999994 55555544455555544
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.51 E-value=9.1e-05 Score=68.31 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=135.5
Q ss_pred CeeEEEECCC--CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcch
Q 012996 82 PIKPIAANSH--GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTV 154 (451)
Q Consensus 82 ~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~ 154 (451)
....|+|+|+ +..|.++...+.|+.+|..++...... ........++|+++++ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~- 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS- 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG-
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC-
Confidence 4679999984 334444444488999998777655433 3445688999999999 44444321 122233211
Q ss_pred hhhhhhhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcEEEEEcCCCceeeee-e--cccceeEEEECCCC
Q 012996 155 FEECESQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTCKVWSLLKGRLLRNI-V--FPSVIDAIALDPAE 230 (451)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~--~~~~i~~~~~~~~~ 230 (451)
.......+. .......+++.+ ++ .++++-..++.|+.+|..++.....+ . .......++++|++
T Consensus 217 ---------~~~~~~~~~-~~~~P~giavd~~~G--~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG 284 (433)
T 4hw6_A 217 ---------GFTERLSLC-NARGAKTCAVHPQNG--KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTG 284 (433)
T ss_dssp ---------TTCCEEEEE-ECSSBCCCEECTTTC--CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTS
T ss_pred ---------Ceecccccc-ccCCCCEEEEeCCCC--eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCC
Confidence 000001111 123345677777 44 55556667788999998877653332 2 12223469999999
Q ss_pred CEEEEEe-CCCcEEEEEccCCCCCCCCCCceee-ee-----------eccCCcceeEEEE---------ec-CCEEEEEc
Q 012996 231 HVFYAGS-RDGSIYIAALNAESPSTSSYGMHII-GS-----------LSDHSKAVTCLAY---------ST-GDLLISGS 287 (451)
Q Consensus 231 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~-~~-----------~~~~~~~v~~~~~---------~~-~~~l~s~~ 287 (451)
+.|+++. ..+.|+.++.......... ...+ .. ....-.....+++ .+ +.++++-.
T Consensus 285 ~~LYvad~~~~~I~~~~~d~~~~~~~~--~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~ 362 (433)
T 4hw6_A 285 DWAYIIYNGKHCIYRVDYNRETGKLAV--PYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR 362 (433)
T ss_dssp SEEEEEETTTTEEEEEEBCTTTCCBCC--CEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcccCc--EEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC
Confidence 9666654 5678999887632110000 0000 00 0001234677888 56 66777767
Q ss_pred CCCcEEEEeCCCCceEEEeecC------------------CCCeeEEEEE-ecCceeeeccCCCCccccc
Q 012996 288 EDGMVRVWDPITHNIVRMFRLA------------------KGPVNNILVV-RRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 288 ~dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~l~~s-~~~~~l~~~s~d~~i~iw~ 338 (451)
..+.|+.++. ++.. .++.+. -..-..|+++ ++|.++++=...+.|+..+
T Consensus 363 ~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 363 DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 7888999985 5643 333321 1235678999 5666555555555555544
No 281
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.50 E-value=1.8e-06 Score=84.71 Aligned_cols=240 Identities=11% Similarity=-0.015 Sum_probs=139.5
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEe-ccCCCEEEEEcCC----CcceeeeccccCCeeEEEEcc-CC
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGG-GQSGDIYMWEVAS----GRLLKKWHAHYRAVTCLVFSE-DG 134 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~~~-~~ 134 (451)
+.|+..++.+............+..|+|++.+..|..+ ...+.|+.+++.. ......+.........|++.+ .+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g 465 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 465 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence 57888888776654444444567899999876666554 4567899999865 222222222223456788875 44
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-CC-CcEEEEEcCCCcee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS-ED-RTCKVWSLLKGRLL 212 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~-~d-~~i~iwd~~~~~~~ 212 (451)
+++++-...+.|.++++... .....+.........+++.+.+ ..|+.+. .. +.|..+++.... .
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~-----------~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~-~ 531 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGV-----------KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVD-I 531 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSC-----------CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCC-C
T ss_pred cEEEEeccCCeEEEEecCCC-----------ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCC-e
Confidence 55555556788999987431 1111112122345677887755 3444333 22 678888775322 2
Q ss_pred eeee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC
Q 012996 213 RNIV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED 289 (451)
Q Consensus 213 ~~~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d 289 (451)
..+. .-.....|+|+|++..|+.+ ...+.|..+++..... ..+............|++..+.++++....
T Consensus 532 ~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~~~lywtd~~~ 604 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIIN 604 (699)
T ss_dssp CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEETTEEEEECSTT
T ss_pred eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEECCEEEEEeCCC
Confidence 2221 22346789999976666555 4567899999875321 112111112233455666556566666677
Q ss_pred CcEEEEeCCCCceEEEeecCCCCeeEEEEEec
Q 012996 290 GMVRVWDPITHNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 290 g~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
+.|..++..+++.+..+.......+.|++.+.
T Consensus 605 ~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~ 636 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNLLAENLLSPEDMVLFHQ 636 (699)
T ss_dssp TCEEEEETTTEEEEECCCTTCSSCCCCCBCSS
T ss_pred CeEEEEEccCCCceEEeecCCCCCcEEEEeCc
Confidence 89999998889888877654334455554433
No 282
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.49 E-value=0.00027 Score=69.97 Aligned_cols=240 Identities=10% Similarity=-0.058 Sum_probs=142.6
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCC-cEEEEeccCCCEEEEEcCCC----cceeeeccccCCeeEEEEccCC-
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHG-TYIAGGGQSGDIYMWEVASG----RLLKKWHAHYRAVTCLVFSEDG- 134 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~~~~- 134 (451)
..|+..++..............+..|+|.+.. .++++-...+.|+.+++... .....+.........|++.+.+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence 45666666655544444455678899998854 44455555678888888642 2233333344567789998766
Q ss_pred cEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-CcEEEEEcCCCceee
Q 012996 135 SFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-RTCKVWSLLKGRLLR 213 (451)
Q Consensus 135 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~ 213 (451)
+++++-...+.|.+.++.. ......+........+|++.+... .++++-... +.|...++.......
T Consensus 484 ~LY~tD~~~~~I~v~~ldG-----------~~~~~l~~~~l~~P~gIaVDp~~g-~LYwtD~g~~~~I~~~~~dG~~~~~ 551 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTKG-----------VKRKTLFRENGSKPRAIVVDPVHG-FMYWTDWGTPAKIKKGGLNGVDIYS 551 (791)
T ss_dssp EEEEEETTTTEEEEEETTS-----------SSEEEEEECTTCCEEEEEEETTTT-EEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cEEEEecCCCeEEEEeCCC-----------CeEEEEEeCCCCCcceEEEecCCC-CEEEecCCCCCeEEEEecCCCceEE
Confidence 4455555678899999843 111111222334578899988652 344443233 678888886433322
Q ss_pred eee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996 214 NIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM 291 (451)
Q Consensus 214 ~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~ 291 (451)
.+. .-.....|++++.+..|+.+. ..+.|..+++..... ..+......-....+|++..+.++++-...+.
T Consensus 552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624 (791)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETTEEEEEETTTTE
T ss_pred EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecCCCccCCCCEEEEeCCEEEEEECCCCE
Confidence 222 225688999998777777664 456899999876431 11211111223445666654556666667788
Q ss_pred EEEEeCCCCceEEEeecCCCCeeEEEEE
Q 012996 292 VRVWDPITHNIVRMFRLAKGPVNNILVV 319 (451)
Q Consensus 292 i~iwd~~~~~~~~~~~~~~~~v~~l~~s 319 (451)
|...|..+++.+..+.........|++.
T Consensus 625 I~~~dk~tG~~~~~l~~~l~~P~~i~v~ 652 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLAENLLSPEDMVLF 652 (791)
T ss_dssp EEEEETTTCCCCEEEECSCSCCCCEEEE
T ss_pred EEEEeCCCCcceEEeecCCCCceeEeee
Confidence 9999988887777765444344455544
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.45 E-value=0.00081 Score=61.31 Aligned_cols=219 Identities=10% Similarity=-0.031 Sum_probs=129.5
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----cee-eeecCCCCeeEEE
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----QVE-VKSLPAEPIKPIA 87 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----~~~-~~~~~~~~v~~~~ 87 (451)
..|+..|+........+. ....+..++ |.+.+..|..+....+.|..++.+.. ... ...........++
T Consensus 92 ~~I~~i~l~~~~~~~~~~----~~~~~~~l~--~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 165 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 165 (400)
T ss_dssp TEEEEECTTSCSCEEEEC----SCSCEEEEE--EETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEE
T ss_pred ceeEEEccCCcceeEecc----ccCcceEEe--eeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEE
Confidence 578888887654443332 234566677 98876666655444488999988752 122 2222345678899
Q ss_pred ECC-CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhccc
Q 012996 88 ANS-HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 88 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~ 164 (451)
+.+ .+++.++-...+.|.+.++........+.........|++.|.+..|+.+.. .+.|...++..
T Consensus 166 vD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG----------- 234 (400)
T 3p5b_L 166 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----------- 234 (400)
T ss_dssp EETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTS-----------
T ss_pred EEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCC-----------
Confidence 987 4555556566788999998655443334434456789999996555555442 36788888732
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEEeCCCc
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
..........-....+|++++.+. .+.++-+..+.|..+|+........... -.....+++ ..+.++++-...+.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~ 312 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA 312 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCS
T ss_pred CccEEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCe
Confidence 111111122234668899997662 4445555677899999864333222221 133456666 23445555556678
Q ss_pred EEEEEccCC
Q 012996 242 IYIAALNAE 250 (451)
Q Consensus 242 i~i~d~~~~ 250 (451)
|..+|..++
T Consensus 313 V~~~~~~~G 321 (400)
T 3p5b_L 313 IFSANRLTG 321 (400)
T ss_dssp EEEEESSSC
T ss_pred EEEEEcCCC
Confidence 888886554
No 284
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.44 E-value=0.0004 Score=61.49 Aligned_cols=267 Identities=10% Similarity=0.030 Sum_probs=141.8
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCce-eeeec----CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV-EVKSL----PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS 111 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 111 (451)
..+.++. |.+.+..+++ +.. |.| +...+.++. ..... ....+.+|.|.+ +..+++ +..|.|+. ....
T Consensus 36 ~~~~~v~--~~~~~~~~~~-G~~-g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~Dg 107 (327)
T 2xbg_A 36 ATILDMS--FIDRHHGWLV-GVN-ATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDG 107 (327)
T ss_dssp SCEEEEE--ESSSSCEEEE-ETT-TEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESST
T ss_pred CcEEEEE--ECCCCcEEEE-cCC-CeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCC
Confidence 3566666 7666666664 444 655 333443321 11111 234688999986 454554 45564443 2222
Q ss_pred Ccceeeec---cccCCeeEEEEccCCcEEEEeeCCCcE-EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 112 GRLLKKWH---AHYRAVTCLVFSEDGSFLISGSEDGCV-RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 112 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i-~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
|+.-.... .+.+.+..+.+.+++..++++ .+|.| +-.|- ..........+...+..+.+.+++
T Consensus 108 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~Dg------------G~tW~~~~~~~~~~~~~~~~~~~~ 174 (327)
T 2xbg_A 108 GQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDS------------GKNWQALVQEAIGVMRNLNRSPSG 174 (327)
T ss_dssp TSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESST------------TSSEEEEECSCCCCEEEEEECTTS
T ss_pred CCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCC------------CCCCEEeecCCCcceEEEEEcCCC
Confidence 33322221 233557788887777666555 45544 32332 111111223345577888887765
Q ss_pred CeeEEEEeeCCCcEEE-EEc--CCCceeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee
Q 012996 188 VSATIVSASEDRTCKV-WSL--LKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 188 ~~~~l~s~~~d~~i~i-wd~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
.+++.+. +|.+.. +|- .+-+.+. ......+..+.+.+++..+ +++.+|.+++.+.+.+. .+..+..
T Consensus 175 --~~~~~g~-~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~------tW~~~~~ 243 (327)
T 2xbg_A 175 --EYVAVSS-RGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE------NWGELLS 243 (327)
T ss_dssp --CEEEEET-TSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE------EECCCBC
T ss_pred --cEEEEEC-CCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC------eeEeccC
Confidence 5665554 454443 442 1222221 1245678889999988755 45567887776422111 0111111
Q ss_pred e-ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEeec---CCCCeeEEEEEecCceeeeccCCCCccccc
Q 012996 265 L-SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFRL---AKGPVNNILVVRRPLYLNLGSFSNPHTSSR 338 (451)
Q Consensus 265 ~-~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~ 338 (451)
- ..+...+.++.+.+ +.+++++ .+|.| ++..+.++.-..+.. ....+.++.|.+++. ++.++.+|.+.-++
T Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 244 PLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 0 01224578888888 6666655 47766 455555655554442 245688999986665 55556778765544
No 285
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.39 E-value=0.0017 Score=62.67 Aligned_cols=113 Identities=8% Similarity=-0.108 Sum_probs=71.2
Q ss_pred ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEECCCCcEEEEecc--CCCEEEEEcCCCcc
Q 012996 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAANSHGTYIAGGGQ--SGDIYMWEVASGRL 114 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~ 114 (451)
....++ +.+.+..|..+....+.|.+.+.+........ ........|++.|.+.+|..... .+.|...++. |..
T Consensus 85 ~P~GlA--vD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~ 161 (619)
T 3s94_A 85 SPDGLA--CDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSS 161 (619)
T ss_dssp CEEEEE--EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCS
T ss_pred CcCeEE--EEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCc
Confidence 344555 77766655555544489999999876543332 34456789999997555554443 3567777764 433
Q ss_pred eeee-ccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCcc
Q 012996 115 LKKW-HAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLLT 153 (451)
Q Consensus 115 ~~~~-~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~ 153 (451)
...+ ...-.....|++++++..|+.+ ...+.|..+|+..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence 3333 3344567899999866555554 4466788888853
No 286
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.37 E-value=0.0011 Score=64.15 Aligned_cols=224 Identities=7% Similarity=-0.071 Sum_probs=138.6
Q ss_pred ccEEEEECCCCceeeeec--CCCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCc-E
Q 012996 61 GSILYWSWSKPQVEVKSL--PAEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGS-F 136 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 136 (451)
+.|+..++++........ .-..+..|+|++.+..| .+-..++.|..+++........+.........+++.+.+. +
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence 678888887655432221 23568899999865555 4545678899999865444333333334577899987544 4
Q ss_pred EEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee--CCCcEEEEEcCCCceeee
Q 012996 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS--EDRTCKVWSLLKGRLLRN 214 (451)
Q Consensus 137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~ 214 (451)
+++-...+.|.+.++... ....+ ....-....++++.|.. ..|+.+. ..+.|...++........
T Consensus 95 Y~tD~~~~~I~v~~~dG~---------~~~~l--~~~~l~~P~~iavdp~~--G~lY~tD~g~~~~I~r~~~dG~~~~~l 161 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQ---------HRQVL--VWKDLDSPRALALDPAE--GFMYWTEWGGKPKIDRAAMDGSERTTL 161 (628)
T ss_dssp EEEETTTTEEEEEETTST---------TCEEE--ECSSCCCEEEEEEETTT--TEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred EEEECCCCEEEEEecCCC---------cEEEE--EeCCCCCcccEEEccCC--CeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence 455555678999988431 11111 11233456789998754 3444444 256788888754433332
Q ss_pred eecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEE
Q 012996 215 IVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVR 293 (451)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~ 293 (451)
...-.....+++++++..|+.+. ..+.|..+|+..... + .+........++++..+.++++-...+.|.
T Consensus 162 ~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~---v~~~~l~~P~glav~~~~ly~tD~~~~~I~ 231 (628)
T 4a0p_A 162 VPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------E---VIADDLPHPFGLTQYQDYIYWTDWSRRSIE 231 (628)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------E---EEEECCSCEEEEEEETTEEEEEETTTTEEE
T ss_pred ECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-------E---EeeccCCCceEEEEECCEEEEecCCCCEEE
Confidence 33345678999999877776664 567899999876431 1 122233445677776555566666688899
Q ss_pred EEeCCCCceEEEee
Q 012996 294 VWDPITHNIVRMFR 307 (451)
Q Consensus 294 iwd~~~~~~~~~~~ 307 (451)
..|..+++....+.
T Consensus 232 ~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 232 RANKTSGQNRTIIQ 245 (628)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEECCCCCceEEEe
Confidence 99987776555544
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.36 E-value=0.00057 Score=60.11 Aligned_cols=221 Identities=11% Similarity=0.017 Sum_probs=129.1
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCce--eeeecCCCCeeEEEECC
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQV--EVKSLPAEPIKPIAANS 90 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~--~~~~~~~~~v~~~~~~~ 90 (451)
..|+..|+........+.. ........++ |.+.+..|..+...++.|..++.+.... ............+++.+
T Consensus 13 ~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld--~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVV--GGLEDAAAVD--FVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEETTCTTSCCEEEE--EEEEEEEEEE--EEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred CeEEEEECCCCceEEEEEe--cCCCccEEEE--EEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 5799999876531111110 0112344556 8887666655544448999999876532 12222234567889987
Q ss_pred -CCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccc
Q 012996 91 -HGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLY 167 (451)
Q Consensus 91 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~ 167 (451)
.+++.++-...+.|.++++........+.........+++.|.+..|+.+. ..+.|...++.. .. .
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG----------~~-~ 157 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG----------SS-R 157 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS----------CS-C
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC----------CC-e
Confidence 455555556677899999764433323334445678999998655555554 256788877632 11 1
Q ss_pred eecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCCcEEEE
Q 012996 168 LHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIA 245 (451)
Q Consensus 168 ~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 245 (451)
.......-....++++++++. .+.++-+..+.|..+|+.... ...+. .......+++. .+..+++-...+.|..+
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILAC 234 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCS-CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCc-eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEE
Confidence 111112233557899998652 555555667889999986432 22222 22345566664 33455555566788888
Q ss_pred EccCCC
Q 012996 246 ALNAES 251 (451)
Q Consensus 246 d~~~~~ 251 (451)
+..++.
T Consensus 235 ~~~~G~ 240 (318)
T 3sov_A 235 NKYTGE 240 (318)
T ss_dssp ETTTCC
T ss_pred ECCCCC
Confidence 886553
No 288
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.35 E-value=0.00011 Score=67.72 Aligned_cols=233 Identities=11% Similarity=0.047 Sum_probs=132.8
Q ss_pred EEecceEeec--cCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC---C-CEEEEEcCCCc
Q 012996 40 ACVGQRFLAS--SQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS---G-DIYMWEVASGR 113 (451)
Q Consensus 40 ~~~~~~~~~~--~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~ 113 (451)
..++ +.|+ ...|.++... +.|+.++..++..............++++++|+++++-... . .+...+...+.
T Consensus 142 ~gva--vd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 142 WRMM--FDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CEEE--ECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred ceEE--EccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3444 7774 3334444443 78999998777766555555678999999999955543321 1 13333322221
Q ss_pred ce-eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee-
Q 012996 114 LL-KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA- 190 (451)
Q Consensus 114 ~~-~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~- 190 (451)
.. ..+. .......++++| ++.++++-..++.|..++..++.. ...+.... ....-..+++++++ +
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~--------~~~~~~~~-~~~~~~~ia~dpdG--~~ 286 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL--------TEEEVMMD-TKGSNFHIVWHPTG--DW 286 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE--------EEEEEECS-CCSSCEEEEECTTS--SE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE--------EEEEeccC-CCCCcccEEEeCCC--CE
Confidence 10 1221 234457789999 677666666678899999853210 00111111 11223468999988 5
Q ss_pred EEEEeeCCCcEEEEEcC--CCcee--eeeec----------------ccceeEEEE---------CCCCCEEEEEeCCCc
Q 012996 191 TIVSASEDRTCKVWSLL--KGRLL--RNIVF----------------PSVIDAIAL---------DPAEHVFYAGSRDGS 241 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~--~~~~~--~~~~~----------------~~~i~~~~~---------~~~~~~l~~~~~dg~ 241 (451)
++++-...+.|+.+++. ++... ..+.. -.....+++ .+++.++++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 55555567889998865 23211 11110 123567888 777777777677788
Q ss_pred EEEEEccCCCCCCCCCCceeeeeecc------------------CCcceeEEEEe-c-CCEEEEEcCCCcEEEEeCC
Q 012996 242 IYIAALNAESPSTSSYGMHIIGSLSD------------------HSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 242 i~i~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~-~-~~~l~s~~~dg~i~iwd~~ 298 (451)
|+.++... . +.++.+ .-.....|+++ + +.++++-..++.|+.++++
T Consensus 367 I~~~~~~G-~----------v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 367 VRVLTPEG-R----------VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEECTTS-E----------EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEECCCC-C----------EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99887532 1 111111 12346788888 4 5555555567778877653
No 289
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00023 Score=65.90 Aligned_cols=252 Identities=10% Similarity=0.020 Sum_probs=142.2
Q ss_pred CeeEEEECC-CCcEE-EEeccCCCEEEEEcCCCcceeeecc---ccCCeeEEEE-------ccCCcEEEEeeCCC-c---
Q 012996 82 PIKPIAANS-HGTYI-AGGGQSGDIYMWEVASGRLLKKWHA---HYRAVTCLVF-------SEDGSFLISGSEDG-C--- 145 (451)
Q Consensus 82 ~v~~~~~~~-~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~s~~~dg-~--- 145 (451)
....|+|+| ++..| ++-...+.|++.|+..+........ .......++| ++++.+|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 34444 4434346799999887765544432 1235789999 99998777666554 2
Q ss_pred ---EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-------CCce----
Q 012996 146 ---VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL-------KGRL---- 211 (451)
Q Consensus 146 ---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~---- 211 (451)
|.+++...... .. .......+..+ .....+++++++. .++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~-~~-~~~~~~~v~~~----~~p~giavdp~~g-~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 220 SPSVYIIKRNADGT-FD-DRSDIQLIAAY----KQCNGATIHPING-ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp EEEEEEEECCTTSC-CS-TTSCEEEEEEE----SCCCCEEECTTTC-CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CceEEEEecCCCCc-ee-ecccceeeccC----CCceEEEEcCCCC-eEEEEECCCCEEEEEecccccccccCceeeccc
Confidence 55555321000 00 00000111111 1234667777432 566677788889999987 5543
Q ss_pred -------eee-ee--cccceeEEEECCCCCEEEEE-eCCCcEEEEEccCCCCCCCCCCceeeeee---cc---------C
Q 012996 212 -------LRN-IV--FPSVIDAIALDPAEHVFYAG-SRDGSIYIAALNAESPSTSSYGMHIIGSL---SD---------H 268 (451)
Q Consensus 212 -------~~~-~~--~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~---------~ 268 (451)
... +. .......++|+|++++|+++ +..+.|+.++.......... ...+.-. .+ .
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~--~~~~aG~~g~~G~~DG~~~~a~ 370 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFIT--PYNFVGGYKQSGYRDDVGTEAR 370 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECC--CEEEEEBTTBCCCBCCBGGGCB
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecc--cEEecCCCCCCcccCCcccccc
Confidence 112 22 23446789999999976655 45678998776543210000 0000000 00 1
Q ss_pred Cccee-EEEEe-------c-CCEEEEEcCCCcEEEEeCCCCceEEEeecC------------------------CCCeeE
Q 012996 269 SKAVT-CLAYS-------T-GDLLISGSEDGMVRVWDPITHNIVRMFRLA------------------------KGPVNN 315 (451)
Q Consensus 269 ~~~v~-~~~~~-------~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------------~~~v~~ 315 (451)
-.... .++.. + +.++++-.....|+.++ .++. +.++.+. -..-..
T Consensus 371 f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~g 448 (496)
T 3kya_A 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSG 448 (496)
T ss_dssp CSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEE
T ss_pred cCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcE
Confidence 12234 45554 5 66777767788899999 4563 4444332 113568
Q ss_pred EEEEec-CceeeeccCCCCccccccCCCCC
Q 012996 316 ILVVRR-PLYLNLGSFSNPHTSSRRHGSQL 344 (451)
Q Consensus 316 l~~s~~-~~~l~~~s~d~~i~iw~~~~~~~ 344 (451)
|+++++ |.++++=+....|+.++..+...
T Consensus 449 Iavd~~~g~lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 449 LVYDDVKEMFYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECCCC-
T ss_pred EEEECCCCEEEEEeCCCCEEEEEECCCCcc
Confidence 899986 66666656667788777765443
No 290
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=0.00018 Score=66.37 Aligned_cols=151 Identities=8% Similarity=-0.003 Sum_probs=94.8
Q ss_pred EEecceEee-ccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEecc-CC----CEEEEEcCCCc
Q 012996 40 ACVGQRFLA-SSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQ-SG----DIYMWEVASGR 113 (451)
Q Consensus 40 ~~~~~~~~~-~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~ 113 (451)
..++ ++| ++..|.++... +.|+.+|.....+............|+|++++++|+++.. ++ .+.+++ ..+.
T Consensus 140 ~~la--vdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 140 VWLS--FDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CEEE--EETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CEEE--ECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 3445 786 45555555554 7899999988776555555667899999999996655543 22 233344 3443
Q ss_pred ce--eeeccccCCeeEEEEcc-CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 114 LL--KKWHAHYRAVTCLVFSE-DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 114 ~~--~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
.. ..+. .......++++| ++.++++-..++.|..++..... ...+.... .......+++++++ +
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~---------~~~~~~~~-~~~~P~gia~~pdG--~ 282 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE---------TTPLFTIQ-DSGWEFHIQFHPSG--N 282 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE---------EEEEEECS-SSSCCEEEEECTTS--S
T ss_pred eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc---------EEEEEEcC-CCCcceeEEEcCCC--C
Confidence 32 2232 234467889999 67766666677899999985311 00111111 12345789999988 6
Q ss_pred -EEEEeeCCCcEEEEEcC
Q 012996 191 -TIVSASEDRTCKVWSLL 207 (451)
Q Consensus 191 -~l~s~~~d~~i~iwd~~ 207 (451)
++++-...+.|..++..
T Consensus 283 ~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 283 YAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCC
Confidence 55555677889998765
No 291
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.30 E-value=5.5e-05 Score=75.23 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=107.7
Q ss_pred CeeEEEEC-CCCcEEEEecc-CC----CEEEEEcCCC-cceee-eccccCCeeEEEEccCCcEEEEeeCC-----CcEEE
Q 012996 82 PIKPIAAN-SHGTYIAGGGQ-SG----DIYMWEVASG-RLLKK-WHAHYRAVTCLVFSEDGSFLISGSED-----GCVRI 148 (451)
Q Consensus 82 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~v 148 (451)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+.. +. .....+.|+||++.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99998886533 22 4999999988 63321 21 123568899999888777665 25777
Q ss_pred eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee---CCCcEEEEEcCCCc-ee--eeee--cccc
Q 012996 149 WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS---EDRTCKVWSLLKGR-LL--RNIV--FPSV 220 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~-~~--~~~~--~~~~ 220 (451)
+++.+... ....+... .......++.|++++ ++|+..+ ....|.++|+.++. .. ..+. ....
T Consensus 252 ~~lgt~~~-------~~~lv~~~-~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 252 HVMGKLQS-------EDVCLYEE-HNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp EETTSCGG-------GCEEEEEC-CCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred EECCCCch-------hcEEEEec-CCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 77754211 01111111 122345678899988 6665544 23468888987752 12 2222 2334
Q ss_pred eeEEEECCCCCEEEEEeCC--C--cEEEEEccCCCCCCCCCCceeeee-eccCCc--ceeEEEEecCCEEEEEcCCCc--
Q 012996 221 IDAIALDPAEHVFYAGSRD--G--SIYIAALNAESPSTSSYGMHIIGS-LSDHSK--AVTCLAYSTGDLLISGSEDGM-- 291 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~d--g--~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~--~v~~~~~~~~~~l~s~~~dg~-- 291 (451)
..++.|+..+.+++....+ + .|..+++.+.. .+. . +..|.. .+..+.+..+.++++...+|.
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~------~~~---~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~ 392 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS------DWS---HVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTR 392 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT------CCC---CEEECCCSSEEEEEEEECSSEEEEEEEETTEEE
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc------cce---eeEECCCCCcEEEEEEEECCEEEEEEEeCCEEE
Confidence 4555554444444444443 2 56666765421 011 1 222333 344555543555666667775
Q ss_pred EEEEeC
Q 012996 292 VRVWDP 297 (451)
Q Consensus 292 i~iwd~ 297 (451)
|.++++
T Consensus 393 l~~~dl 398 (751)
T 2xe4_A 393 IWTMMA 398 (751)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 555665
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.30 E-value=0.0017 Score=57.46 Aligned_cols=230 Identities=12% Similarity=0.057 Sum_probs=123.6
Q ss_pred CceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee----cCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC
Q 012996 37 HGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS----LPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG 112 (451)
Q Consensus 37 ~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 112 (451)
..+..+. |.+ +..++ ++.. +.|.. ..+.++--... .....+..+.+.+++..++++. +|.|..- ...|
T Consensus 80 ~~~~~i~--~~~-~~~~~-~g~~-g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S-~DgG 151 (327)
T 2xbg_A 80 YRFNSVS--FQG-NEGWI-VGEP-PIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRT-KDSG 151 (327)
T ss_dssp CEEEEEE--EET-TEEEE-EEET-TEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEE-SSTT
T ss_pred ccEEEEE--ecC-CeEEE-EECC-CeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEE-cCCC
Confidence 3566666 765 44433 3444 54443 33333321111 1234577888877777777654 5554321 1223
Q ss_pred cceee-eccccCCeeEEEEccCCcEEEEeeCCCcEEE-eeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCee
Q 012996 113 RLLKK-WHAHYRAVTCLVFSEDGSFLISGSEDGCVRI-WSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSA 190 (451)
Q Consensus 113 ~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 190 (451)
+.-.. ...+...+..+.+.+++.+++.+. +|.+.. +|-.. .....+ -......+..+.+.+++ .
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG---------~tW~~~--~~~~~~~~~~~~~~~~g--~ 217 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQ---------TAWEPH--NRTTSRRLHNMGFTPDG--R 217 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTC---------SSCEEE--ECCSSSCEEEEEECTTS--C
T ss_pred CCCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCC---------CceeEC--CCCCCCccceeEECCCC--C
Confidence 32222 234456788999999888776664 444433 33200 111112 12344567788887665 4
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeee
Q 012996 191 TIVSASEDRTCKVWSLLKGRLLRNIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSL 265 (451)
Q Consensus 191 ~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 265 (451)
++.++.+|.+++.+...++.-..+.. ...+.++.+.+++..++++. +|.|+ +..+.+. .+..+...
T Consensus 218 -~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~-~S~DgG~------tW~~~~~~ 288 (327)
T 2xbg_A 218 -LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL-CSQDGGQ------TWQQDVDV 288 (327)
T ss_dssp -EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE-EESSTTS------SCEECGGG
T ss_pred -EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE-EeCCCCc------ccEEcCcc
Confidence 44556678877764333433333321 23578899998777666554 66663 3333332 12222211
Q ss_pred ccCCcceeEEEEecCCEEEEEcCCCcEEEEeC
Q 012996 266 SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDP 297 (451)
Q Consensus 266 ~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~ 297 (451)
..+...+.++.|.++..+++++.+|.|.-++-
T Consensus 289 ~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 289 KKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp TTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 12345678888877555777778998877663
No 293
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.29 E-value=0.0014 Score=56.23 Aligned_cols=256 Identities=11% Similarity=0.095 Sum_probs=151.2
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (451)
+.+|.|-|+..+..+.+..- .....| .+|..+.+|.-.. .++.++|+++.+........+.|..=.|-.+
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi--~AdsAI------MnP~~~ViALrag--~~LQiFnletK~klks~~~~e~VvfWkWis~ 117 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPI--SADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 117 (365)
T ss_dssp EEEEEEEETTSTTSCEEEEC--CCSEEE------ECSSSSEEEEEET--TEEEEEETTTTEEEEEEECSSCEEEEEECSS
T ss_pred CCEEEEEECCCCCCcccccc--ccceee------eCCCccEEEEecC--CeEEEechHHhhhhcceecCCccEEEEecCC
Confidence 33677777776555432211 111111 5677777766653 7999999999887666666788888888655
Q ss_pred CcEEEEeccCCCEEEEEcCC-Ccceeeecccc----CCeeEEEEccCCcEEEEeeC-------CCcEEEeeCcchhhhhh
Q 012996 92 GTYIAGGGQSGDIYMWEVAS-GRLLKKWHAHY----RAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECE 159 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~ 159 (451)
.. |+..+. ..|+.|++.. ..+.+.+..|. ..|..-..+++.++++..|- .|.+.+|..+.
T Consensus 118 ~~-L~lVT~-taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------ 189 (365)
T 2xzh_A 118 NT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------ 189 (365)
T ss_dssp SE-EEEEES-SEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT------
T ss_pred Ce-EEEEcC-CcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc------
Confidence 44 444343 4799999974 35566665543 45666677888888764432 36788898843
Q ss_pred hhcccccceecccCCcCceeEEEEeecCC-eeEEEEeeC---CCcEEEEEcCCC---cee-----eeeec-----cccee
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGV-SATIVSASE---DRTCKVWSLLKG---RLL-----RNIVF-----PSVID 222 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~~l~s~~~---d~~i~iwd~~~~---~~~-----~~~~~-----~~~i~ 222 (451)
...+.+.+|...-..+.+..+.. ..+++.+.. .+.+++.++... ... ..+.. ..-.-
T Consensus 190 ------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPV 263 (365)
T 2xzh_A 190 ------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 263 (365)
T ss_dssp ------TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEE
T ss_pred ------cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceE
Confidence 23455667765544443322211 123333322 258899988442 111 11111 23456
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH 300 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~ 300 (451)
++..++.-..++.-+.-|.|++||+.++. ++..-+-....|..-+.+. ..-++.....|.|.--.++..
T Consensus 264 amqvs~kygviyviTK~G~ihlyDleTgt---------~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 264 AMQISEKHDVVFLITKYGYIHLYDLETGT---------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEEecccCCEEEEEeCCcEEEEEEcccCc---------EEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 78888888899999999999999999974 3333333344444444433 233333345555554444433
No 294
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.21 E-value=0.005 Score=59.51 Aligned_cols=179 Identities=7% Similarity=-0.064 Sum_probs=98.2
Q ss_pred CCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-cCCCCeeEEEEC
Q 012996 11 ADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-LPAEPIKPIAAN 89 (451)
Q Consensus 11 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-~~~~~v~~~~~~ 89 (451)
.++.|..+++........+......+.++ + +.+.+..|..+....+.|.+.+++........ ........|++.
T Consensus 57 ~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl---A--vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavd 131 (628)
T 4a0p_A 57 SLKTISRAFMNGSALEHVVEFGLDYPEGM---A--VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALD 131 (628)
T ss_dssp TTTEEEEEETTSCSCEEEECSSCSCCCEE---E--EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEE
T ss_pred CCCeEEEEECCCCCcEEEEeCCCCCcceE---E--EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEc
Confidence 45666666655333222222222233333 3 55555545444443488999998765543322 334567899999
Q ss_pred CCCcEEEEec--cCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhccccc
Q 012996 90 SHGTYIAGGG--QSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHL 166 (451)
Q Consensus 90 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~ 166 (451)
|...+|.... ..+.|...++.... ...+-........|++++++..|+.+ ...+.|..+|+... ...
T Consensus 132 p~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~---------~~~ 201 (628)
T 4a0p_A 132 PAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL---------NRE 201 (628)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCE
T ss_pred cCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC---------ceE
Confidence 8655555444 24678878765433 33333345667899999976666555 44678888888431 111
Q ss_pred ceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc
Q 012996 167 YLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR 210 (451)
Q Consensus 167 ~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~ 210 (451)
. +........++++.. + .++++-...+.|...|..+++
T Consensus 202 v---~~~~l~~P~glav~~-~--~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 202 V---IADDLPHPFGLTQYQ-D--YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp E---EEECCSCEEEEEEET-T--EEEEEETTTTEEEEEETTTCC
T ss_pred E---eeccCCCceEEEEEC-C--EEEEecCCCCEEEEEECCCCC
Confidence 1 111222334555543 2 455555456667777755443
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=0.00069 Score=62.70 Aligned_cols=240 Identities=9% Similarity=0.081 Sum_probs=132.2
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceE-------eeccCcccCCCCCCc------cEEEEECCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRF-------LASSQLREQPSASSG------SILYWSWSK 70 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~~~~~d~g------~i~vw~~~~ 70 (451)
++++.. ..+.|++.|+.++.....+............++ | .++|..|.++...++ .|.+.+...
T Consensus 154 Lyv~~~-~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia--~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~ 230 (496)
T 3kya_A 154 LYICYD-GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIA--FNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230 (496)
T ss_dssp EEEEEE-TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEE--ECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred EEEEEC-CCCeEEEEECCCCEEEEEEccCccccCCCcEEE--EeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence 344444 456788899887666544433222344567777 8 999986666655422 266665333
Q ss_pred -Ccee-----eeecCCCCeeEEEECC-CCcEEEEeccCCCEEEEEcC-------CCcc-----------eee-ec-cccC
Q 012996 71 -PQVE-----VKSLPAEPIKPIAANS-HGTYIAGGGQSGDIYMWEVA-------SGRL-----------LKK-WH-AHYR 123 (451)
Q Consensus 71 -~~~~-----~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-------~~~~-----------~~~-~~-~~~~ 123 (451)
+... ...........++++| ++.++++-..++.|..+|+. ++.. ... +. +...
T Consensus 231 ~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~ 310 (496)
T 3kya_A 231 DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS 310 (496)
T ss_dssp TSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred CCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence 1221 0111123456888999 45556666677889999987 4543 112 11 2234
Q ss_pred CeeEEEEccCCcEEEEe-eCCCcEEEeeCcchhhhhhhhcccccceec--ccC---------CcCcee-EEEEeec----
Q 012996 124 AVTCLVFSEDGSFLISG-SEDGCVRIWSLLTVFEECESQRASHLYLHS--FTG---------HTLRIT-DIVIGYG---- 186 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~i~-~i~~~~~---- 186 (451)
....++|+|++++|+.+ +..+.|+.++......... ........ ..+ .-.... .++....
T Consensus 311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~---~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~ 387 (496)
T 3kya_A 311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI---TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTG 387 (496)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC---CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCS
T ss_pred CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec---ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccc
Confidence 46799999999964444 5567888866532100000 00000000 000 111233 3444310
Q ss_pred -CCeeEEEEeeCCCcEEEEEcCCCceeeeee-c------------------------ccceeEEEECCC-CCEEEEEeCC
Q 012996 187 -GVSATIVSASEDRTCKVWSLLKGRLLRNIV-F------------------------PSVIDAIALDPA-EHVFYAGSRD 239 (451)
Q Consensus 187 -~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~------------------------~~~i~~~~~~~~-~~~l~~~~~d 239 (451)
..+.++++-...++|+.++ .++. +.++. . -.....++++++ +.++++=...
T Consensus 388 ~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N 465 (496)
T 3kya_A 388 EEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG 465 (496)
T ss_dssp SCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred cCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence 2236666667788999998 4553 33332 1 023568899886 6655555667
Q ss_pred CcEEEEEccCCC
Q 012996 240 GSIYIAALNAES 251 (451)
Q Consensus 240 g~i~i~d~~~~~ 251 (451)
.+|+.+++....
T Consensus 466 ~rIrki~~~~~~ 477 (496)
T 3kya_A 466 HTIRTISMEQEE 477 (496)
T ss_dssp TEEEEEEECCCC
T ss_pred CEEEEEECCCCc
Confidence 789999887653
No 296
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.17 E-value=0.0099 Score=61.60 Aligned_cols=306 Identities=13% Similarity=0.099 Sum_probs=159.3
Q ss_pred EEeecCCC-CCCeEEEECccCceeeeeecC-CCCCCceEEecceEeeccCcccCCCCCCccEEEEECC--CCceee---e
Q 012996 4 LIASSSVA-DTGIGCWDLESGAEQLRYKSC-ASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWS--KPQVEV---K 76 (451)
Q Consensus 4 ~l~s~~~~-dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~--~~~~~~---~ 76 (451)
++|.|. . |++|+|+++.+.+.+...... ...+..+..+. + ....+|.++-.| |.+.-+.++ ++.... .
T Consensus 573 ~~aVg~-~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~--~-~~~~~L~igl~d-G~l~~~~~d~~tg~l~d~r~~ 647 (1158)
T 3ei3_A 573 LCAIGL-WTDISARILKLPSFELLHKEMLGGEIIPRSILMTT--F-ESSHYLLCALGD-GALFYFGLNIETGLLSDRKKV 647 (1158)
T ss_dssp EEEEEE-TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--E-TTEEEEEEEETT-SEEEEEEECTTTCCEEEEEEE
T ss_pred EEEEEE-CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--e-CCCcEEEEEeCC-CeEEEEEEcCCCCccccceeE
Confidence 567777 5 999999999987766543322 12344554444 3 334567766666 888766654 343332 2
Q ss_pred ecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeE-EEEccC--CcEEEEeeCCCcEEEeeCcc
Q 012996 77 SLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTC-LVFSED--GSFLISGSEDGCVRIWSLLT 153 (451)
Q Consensus 77 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~--~~~l~s~~~dg~i~vwd~~~ 153 (451)
.....++.-..+...+..-+.+..+....+|.- .++.... .-....+.. ..|+.. ..-++..+ ++.++|..+.+
T Consensus 648 ~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~-~~~l~~s-~l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~ 724 (1158)
T 3ei3_A 648 TLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSS-NHKLVFS-NVNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDE 724 (1158)
T ss_dssp ECCSSCCEEEEEESSSCEEEEEESSSCEEEEES-SSSEEEE-EBSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECC
T ss_pred EcCCCceEEEEEeeCCceeEEEECCCCEEEEEc-CCceEEe-ccChHHhceEeccCcccCCCcEEEEc-CCceEEEEecc
Confidence 223456655555444433222233445555543 3332221 112223333 345431 22344333 44688887744
Q ss_pred hhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEee-------------------------------------
Q 012996 154 VFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSAS------------------------------------- 196 (451)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~------------------------------------- 196 (451)
.. ...+..+. -...+..+++++.. +.++.+.
T Consensus 725 ~~---------~~~~~~ip-L~~Tprri~y~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1158)
T 3ei3_A 725 IQ---------KLHIRTVP-LYESPRKICYQEVS--QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS 792 (1158)
T ss_dssp SS---------SEEEEEEE-CSSEEEEEEEEGGG--TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred cC---------CeeEEEEe-CCCCceEEEEcCCC--CEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence 21 11111111 12234444554433 1111111
Q ss_pred ------------CCCcEEEEEcCCCceeeeeec--ccceeEEE---ECC-CCCEEEEEe----------CCCcEEEEEcc
Q 012996 197 ------------EDRTCKVWSLLKGRLLRNIVF--PSVIDAIA---LDP-AEHVFYAGS----------RDGSIYIAALN 248 (451)
Q Consensus 197 ------------~d~~i~iwd~~~~~~~~~~~~--~~~i~~~~---~~~-~~~~l~~~~----------~dg~i~i~d~~ 248 (451)
.-+.|++.|..+.+.+..+.. ...+.+++ |.. ...++++|+ ..|.|++|++.
T Consensus 793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 113578888888887776663 34455544 332 247888887 35789999997
Q ss_pred CCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeec
Q 012996 249 AESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 328 (451)
..+ .+.+... ...++|++++--.| +|++|- ..+|++|++...+.++.-..+-..|..+.....+.+++.|
T Consensus 873 ~~k-------L~lv~~~-~v~g~v~al~~~~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vg 942 (1158)
T 3ei3_A 873 DGK-------LQTVAEK-EVKGAVYSMVEFNG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVG 942 (1158)
T ss_dssp TTE-------EEEEEEE-EESSCEEEEEEETT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEE
T ss_pred CCE-------EEEEEEE-EcCCcCEEEeeeCC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEE
Confidence 321 2333322 24678888765445 555443 5789999998765554211112224444444567788887
Q ss_pred cCCCCcccccc
Q 012996 329 SFSNPHTSSRR 339 (451)
Q Consensus 329 s~d~~i~iw~~ 339 (451)
..-..+.+...
T Consensus 943 D~~~Sv~~~~y 953 (1158)
T 3ei3_A 943 DLMRSVLLLAY 953 (1158)
T ss_dssp ESSBCEEEEEE
T ss_pred EhhheEEEEEE
Confidence 76666655543
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.16 E-value=0.0036 Score=55.99 Aligned_cols=216 Identities=11% Similarity=0.128 Sum_probs=137.9
Q ss_pred CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCC
Q 012996 12 DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSH 91 (451)
Q Consensus 12 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~ 91 (451)
+..|.|-|+..+..+.+... .....| .+|..+.+|.-.. .++.|+|+++..........+.|..=.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~AdsAI------MnP~~~iiALrag--~~lQiFnle~K~klks~~~~e~VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--SADSAI------MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--CCSEEE------ECSSSSCEEEEET--TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred CCeEEEEECCCCCcceeccc--ccceee------eCCCCcEEEEecC--CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence 34677888777655432211 111111 6677777776653 7999999998887666656678888888654
Q ss_pred CcEEEEeccCCCEEEEEcCCC-cceeeecccc----CCeeEEEEccCCcEEEEeeC-------CCcEEEeeCcchhhhhh
Q 012996 92 GTYIAGGGQSGDIYMWEVASG-RLLKKWHAHY----RAVTCLVFSEDGSFLISGSE-------DGCVRIWSLLTVFEECE 159 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~----~~v~~~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~ 159 (451)
.. |+..+. ..|+-|++... .+.+.+..|. ..|..-..+++.++++..|- .|.+.+|..+.
T Consensus 117 ~~-l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er------ 188 (494)
T 1bpo_A 117 NT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR------ 188 (494)
T ss_dssp TE-EEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT------
T ss_pred Ce-EEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc------
Confidence 44 444443 47999999643 5566665543 45666777888888774332 46788998843
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCe-eEEEEeeC---CCcEEEEEcCCC---cee-----eeeec-----cccee
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATIVSASE---DRTCKVWSLLKG---RLL-----RNIVF-----PSVID 222 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l~s~~~---d~~i~iwd~~~~---~~~-----~~~~~-----~~~i~ 222 (451)
...+.+.+|...-..+.+..+... .+++.+.. .+.++|.++... ... ..+.. ..-..
T Consensus 189 ------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 189 ------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp ------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred ------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 344556777766655544322211 33443433 278999998543 111 11111 23456
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 223 AIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 223 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
++..++.-..++.-+.-|.|++||+.++.
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred EEEecccCCEEEEEecCceEEEEecccce
Confidence 78889988999999999999999999974
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.001 Score=58.12 Aligned_cols=200 Identities=13% Similarity=0.214 Sum_probs=118.6
Q ss_pred EeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCc---ccCCCCC--CccEEEEECC--CCceeeee
Q 012996 5 IASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQL---REQPSAS--SGSILYWSWS--KPQVEVKS 77 (451)
Q Consensus 5 l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---l~~~~~d--~g~i~vw~~~--~~~~~~~~ 77 (451)
++... ..+.+.+||+ +|+.+..+.. +..+.|-... .|.-.|+. ++++..+ +++|.+|+++ +..+....
T Consensus 43 ii~t~-k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~ 117 (355)
T 3amr_A 43 LITTN-KKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT 117 (355)
T ss_dssp EEEEE-TTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred EEEEc-CCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence 33334 4678999999 8999988753 3334443221 13223332 3333443 4899999774 33322221
Q ss_pred c------CC-CCeeEEEE--CCC-Cc-EEEEeccCCCEEEEEcC-------CCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996 78 L------PA-EPIKPIAA--NSH-GT-YIAGGGQSGDIYMWEVA-------SGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (451)
Q Consensus 78 ~------~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 139 (451)
. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.++++.. .+.+..+...+....|+.
T Consensus 118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEE
Confidence 1 11 56777887 774 43 67888889999999983 3355666654 356788888888888999
Q ss_pred eeCCCcEEEeeCcchhhhhhhhcccccceeccc-CC-cCceeEEEEeecCCee-EEEEee-CCCcEEEEEcC-CCceeee
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-GH-TLRITDIVIGYGGVSA-TIVSAS-EDRTCKVWSLL-KGRLLRN 214 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~i~~~~~~~~~-~l~s~~-~d~~i~iwd~~-~~~~~~~ 214 (451)
+-.+.-|..++.+... ......+..+. ++ ...+..|++-+...+. +|++++ .+.++.+||.. +.+.+..
T Consensus 197 ~eEd~GIw~~da~p~~------~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDG------GSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp EETTTEEEEEECSTTS------CSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred ecccceEEEEeCCcCC------CCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9998665555542200 00122233221 22 3468888885433223 455444 67799999986 5555555
Q ss_pred ee
Q 012996 215 IV 216 (451)
Q Consensus 215 ~~ 216 (451)
|.
T Consensus 271 f~ 272 (355)
T 3amr_A 271 FR 272 (355)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 299
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.09 E-value=6.5e-05 Score=73.78 Aligned_cols=219 Identities=9% Similarity=-0.041 Sum_probs=121.4
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCC----Cceeeee-cCCCCeeEEE
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSK----PQVEVKS-LPAEPIKPIA 87 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~----~~~~~~~-~~~~~v~~~~ 87 (451)
+.|+..++.+......+... ..+..++ |.+.+..|..+....+.|..+++.+ ....... ........|+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~----~~p~gla--~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNL----RNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TC-CEECTTSCCEECCSCCC----TTCCCCE--EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred cceEEEeCCCCcceeeeccC----cceEEEc--cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 57788887766554333322 2233444 8887666666554448999999875 2211111 1223456788
Q ss_pred ECCC-CcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-C-CcEEEeeCcchhhhhhhhccc
Q 012996 88 ANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-D-GCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 88 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-d-g~i~vwd~~~~~~~~~~~~~~ 164 (451)
+.+. ++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++.. ..
T Consensus 460 vD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG---------~~ 530 (699)
T 1n7d_A 460 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG---------VD 530 (699)
T ss_dssp CCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS---------CC
T ss_pred EEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC---------CC
Confidence 8854 455555456788999997654433333333345678999986555554432 2 6787777632 11
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEEeCCCc
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
...+ ....-....+|++++.+. .++++-+..+.|..+++........+.. ......+++..+ .++++....+.
T Consensus 531 ~~~l--~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~ 606 (699)
T 1n7d_A 531 IYSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEA 606 (699)
T ss_dssp CCEE--SCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTC
T ss_pred eeEE--EeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCe
Confidence 1111 111223456789987652 5556666678899999864322222211 122344555443 44445556678
Q ss_pred EEEEEccCC
Q 012996 242 IYIAALNAE 250 (451)
Q Consensus 242 i~i~d~~~~ 250 (451)
|..++..++
T Consensus 607 V~~~d~~~G 615 (699)
T 1n7d_A 607 IFSANRLTG 615 (699)
T ss_dssp EEEEETTTE
T ss_pred EEEEEccCC
Confidence 888886554
No 300
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.08 E-value=0.0068 Score=60.10 Aligned_cols=218 Identities=9% Similarity=-0.077 Sum_probs=123.0
Q ss_pred CCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC----c-eeeeecCCCCeeEEE
Q 012996 13 TGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP----Q-VEVKSLPAEPIKPIA 87 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~----~-~~~~~~~~~~v~~~~ 87 (451)
..|+..++........+. ....+..++ |.+....|..+....+.|+.+++... . .............|+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~----~~~~~~gl~--~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLA 477 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP----NLRNVVALD--TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 477 (791)
T ss_dssp SSEEEECTTSCCCEEEEC----SCSSEEEEE--EETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred cceeEeeccCCcceeeec----CCCceEEEe--ecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceee
Confidence 467777776554433222 224455666 88765555554444488988888753 1 122222345677899
Q ss_pred ECCCCc-EEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeC--CCcEEEeeCcchhhhhhhhccc
Q 012996 88 ANSHGT-YIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE--DGCVRIWSLLTVFEECESQRAS 164 (451)
Q Consensus 88 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~ 164 (451)
+.+.+. ++++-...+.|.+.++........+.........|++.|.+.+|+.+.. .+.|.+.++..
T Consensus 478 vD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG----------- 546 (791)
T 3m0c_C 478 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG----------- 546 (791)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-----------
T ss_pred eeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-----------
Confidence 987664 4455566788999998644433333334456889999997555555442 26788887732
Q ss_pred ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeeec---ccceeEEEECCCCCEEEEE-eCCC
Q 012996 165 HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVF---PSVIDAIALDPAEHVFYAG-SRDG 240 (451)
Q Consensus 165 ~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~-~~dg 240 (451)
......+...-....+|++.+... .++++-...+.|..+++........+.. -....+|++. +..|+.. ...+
T Consensus 547 ~~~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~ 623 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINE 623 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTT
T ss_pred CceEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCC
Confidence 111111222334678899986652 4444545567899999864433322221 1233455553 3344444 4556
Q ss_pred cEEEEEccCC
Q 012996 241 SIYIAALNAE 250 (451)
Q Consensus 241 ~i~i~d~~~~ 250 (451)
.|...+..++
T Consensus 624 ~I~~~dk~tG 633 (791)
T 3m0c_C 624 AIFSANRLTG 633 (791)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEeCCCC
Confidence 7777776554
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.06 E-value=0.0014 Score=56.86 Aligned_cols=158 Identities=8% Similarity=0.034 Sum_probs=102.6
Q ss_pred CCCeeEEEECCCCcEE-EEeccCCCEEEEEcCCCcceee-ecc----cc--CCeeEEEE---ccCCcEEEEee-------
Q 012996 80 AEPIKPIAANSHGTYI-AGGGQSGDIYMWEVASGRLLKK-WHA----HY--RAVTCLVF---SEDGSFLISGS------- 141 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~s~~------- 141 (451)
.--..+++|.+....| ++.-..|.|..|+...+..... +.. .. ..+..|.| .|+++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3445688998754444 5544789999999875543322 222 11 13578999 68887777543
Q ss_pred ------CCCcEEEeeCc---chhhhhhhhcccccceecccC-----------CcCceeEEEEeecCCeeEEEEeeCC-Cc
Q 012996 142 ------EDGCVRIWSLL---TVFEECESQRASHLYLHSFTG-----------HTLRITDIVIGYGGVSATIVSASED-RT 200 (451)
Q Consensus 142 ------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~-----------~~~~i~~i~~~~~~~~~~l~s~~~d-~~ 200 (451)
.+..|..||+. ++. ......+.. -.....+++..++| +..++++.. +.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~---------~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G--naYVt~s~~~~~ 160 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSK---------PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG--NSYVAFALGMPA 160 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCC---------CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS--CEEEEEEESSCE
T ss_pred cccccCCCCEEEEEcCCcCCCCC---------EEEEecCccccccccccccccccCCceeEECCCC--CEEEeCCCCCCe
Confidence 25779999986 321 111111111 11347788888877 788888888 88
Q ss_pred EEEEEcCCCceeeeee--c-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 201 CKVWSLLKGRLLRNIV--F-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 201 i~iwd~~~~~~~~~~~--~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
|..++.... .+..+. . ....+.++++|++..|++....|.+..+|+..
T Consensus 161 I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 161 IARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 887776533 333222 1 12366899999999999887799999999884
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.02 E-value=0.0018 Score=56.38 Aligned_cols=221 Identities=10% Similarity=0.061 Sum_probs=109.3
Q ss_pred CCcEEEEec-cC-----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCC-----CcEEEeeCcchhhh
Q 012996 91 HGTYIAGGG-QS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSED-----GCVRIWSLLTVFEE 157 (451)
Q Consensus 91 ~~~~l~~~~-~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~ 157 (451)
++.+++.|+ .+ ..+.+||+.+.+-.. .+.........+. .++..++.|+.+ ..+.+||+.+...
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~- 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADED- 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTT-
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCC-
Confidence 456667776 33 368899987664222 2221111112222 357777777765 3588888865210
Q ss_pred hhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeeeee--cccceeEEEECCCC
Q 012996 158 CESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAE 230 (451)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~ 230 (451)
.....+..+....... +++. .++ .+++.|+.+ ..+.+||+.+.+-...-. .+..-.+++. .++
T Consensus 91 -----~~W~~~~~~p~~r~~~-~~~~-~~~--~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~ 160 (301)
T 2vpj_A 91 -----GVWYSVAPMNVRRGLA-GATT-LGD--MIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASG 160 (301)
T ss_dssp -----CCCEEECCCSSCCBSC-EEEE-ETT--EEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETT
T ss_pred -----CeeEECCCCCCCccce-eEEE-ECC--EEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECC
Confidence 0022222221111111 1222 244 677777654 358899988765433222 1111122222 266
Q ss_pred CEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCC
Q 012996 231 HVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITH 300 (451)
Q Consensus 231 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~ 300 (451)
.+++.|+.+ ..+.+||+.+.. +..+..+....... ++....+.+++.|+.+ ..+.+||+.+.
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGA-GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSC-EEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccc-eEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 677777654 358888887653 23232222111111 2222236677777764 46899999876
Q ss_pred ceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 301 NIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 301 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
+-...-..........+..-+++.++.|+.++
T Consensus 233 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 264 (301)
T 2vpj_A 233 SWTTVTSMTTPRCYVGATVLRGRLYAIAGYDG 264 (301)
T ss_dssp EEEEECCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred cEEECCCCCCcccceeEEEECCEEEEEcCcCC
Confidence 54332222222222223334677778887664
No 303
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.00 E-value=0.013 Score=56.49 Aligned_cols=280 Identities=11% Similarity=-0.018 Sum_probs=145.8
Q ss_pred EEecceEeeccCcccCCCCCCccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeee
Q 012996 40 ACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKW 118 (451)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 118 (451)
..++ +.++++.|..+....+.|...+++......... .......|++..+ .++.+-...+.|...|..+++....+
T Consensus 174 ~Gla--ld~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 174 NGLT--LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEE--EETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred cEEE--EEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 3444 777666666555444788888887654332211 2233467777755 44555556678999998777543332
Q ss_pred ccccCC-------------------------eeEEEEc-c-----------------CC--------cEEEEeeCCCcEE
Q 012996 119 HAHYRA-------------------------VTCLVFS-E-----------------DG--------SFLISGSEDGCVR 147 (451)
Q Consensus 119 ~~~~~~-------------------------v~~~~~~-~-----------------~~--------~~l~s~~~dg~i~ 147 (451)
...... +..+++. | |+ .+|+.+ ..+.|+
T Consensus 251 ~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~ 329 (619)
T 3s94_A 251 HSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTDLR 329 (619)
T ss_dssp CSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEE
T ss_pred ecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccceE
Confidence 211111 1111111 1 10 112221 123444
Q ss_pred EeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-cccceeEEEE
Q 012996 148 IWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-FPSVIDAIAL 226 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~i~~~~~ 226 (451)
..++.... .......+. .-..+.++++.+... .++++-...+.|+.+++........+. .-.....+++
T Consensus 330 ~i~l~~~~--------~~~~~~~~~-~l~~~~~ld~d~~~~-~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv 399 (619)
T 3s94_A 330 RISLDTPD--------FTDIVLQLE-DIRHAIAIDYDPVEG-YIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV 399 (619)
T ss_dssp EEESSSTT--------CCCEECCCS-CCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEecCCCc--------cceeEEecc-ccCccEEEEEEcCCC-eEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence 44442210 000011111 123456778876442 455555567889989886543322222 2246778999
Q ss_pred CCCCCEE-EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCce
Q 012996 227 DPAEHVF-YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNI 302 (451)
Q Consensus 227 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~ 302 (451)
++.+..| ++-+..+.|.+.++..... .. .....-....+|++.| ...|..+. ..+.|...++.....
T Consensus 400 D~~~~~lY~tD~~~~~I~v~~~~G~~~-------~~--l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~ 470 (619)
T 3s94_A 400 DWVARNLYWTDTGTDRIEVTRLNGTMR-------KI--LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR 470 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSCSC-------EE--EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred ecccCcEEEEeCCCCcEEEEeCCCCeE-------EE--EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc
Confidence 8755544 4445678899999876421 11 1122345688999999 45555443 236677777653322
Q ss_pred EEEeecCCCCeeEEEEEecCceeeecc-CCCCccccccCCC
Q 012996 303 VRMFRLAKGPVNNILVVRRPLYLNLGS-FSNPHTSSRRHGS 342 (451)
Q Consensus 303 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-~d~~i~iw~~~~~ 342 (451)
.......-...+.|++++++..|..+. ..+.|...+..+.
T Consensus 471 ~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 471 VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 222233345678999998776665553 3455666666554
No 304
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.99 E-value=0.0023 Score=55.47 Aligned_cols=204 Identities=8% Similarity=0.055 Sum_probs=123.4
Q ss_pred ccccCCeeEEEEccCCcEEEEee-CCCcEEEeeCcchhhhhhhhcccccceecccC----C--cCceeEEEE---eecCC
Q 012996 119 HAHYRAVTCLVFSEDGSFLISGS-EDGCVRIWSLLTVFEECESQRASHLYLHSFTG----H--TLRITDIVI---GYGGV 188 (451)
Q Consensus 119 ~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~--~~~i~~i~~---~~~~~ 188 (451)
........++.|++....|+.++ ..++|..|+.... ....+ .+.+ . ...+.++.| .+.+
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---------~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g- 77 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---------SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK- 77 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---------CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---------eEEEE-ecCCccccCCCcceeeEEEEeccCCCC-
Confidence 34444556899988544555554 7899999998531 11111 2221 1 123567888 4554
Q ss_pred eeEEEEee-------------CCCcEEEEEcC---CCceeeeeecc--------------cceeEEEECCCCCEEEEEeC
Q 012996 189 SATIVSAS-------------EDRTCKVWSLL---KGRLLRNIVFP--------------SVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 189 ~~~l~s~~-------------~d~~i~iwd~~---~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~ 238 (451)
.++++.. .+..|..||+. +++.+...... .....++..++|+..++++.
T Consensus 78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~ 156 (334)
T 2p9w_A 78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL 156 (334)
T ss_dssp -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE
T ss_pred -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC
Confidence 6766544 26789999999 78877766522 24789999999999999988
Q ss_pred C-CcEEEEEccCCCCCCCCCCceeee-ee--ccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCCce--EEEee-cC-
Q 012996 239 D-GSIYIAALNAESPSTSSYGMHIIG-SL--SDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITHNI--VRMFR-LA- 309 (451)
Q Consensus 239 d-g~i~i~d~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-~~- 309 (451)
. +.|..++...... .... .. .......+.|+++| +..|++....|.|..+|+.+... +..-. +.
T Consensus 157 ~~~~I~rV~pdG~~~-------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~ 229 (334)
T 2p9w_A 157 GMPAIARVSADGKTV-------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDF 229 (334)
T ss_dssp SSCEEEEECTTSCCE-------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCC
T ss_pred CCCeEEEEeCCCCEE-------eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCc
Confidence 8 8888777765421 1000 01 11223477999999 88888887799999999885432 21110 21
Q ss_pred --CCCeeEE-EEEecCce-eeeccCCCCccccccCC
Q 012996 310 --KGPVNNI-LVVRRPLY-LNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 310 --~~~v~~l-~~s~~~~~-l~~~s~d~~i~iw~~~~ 341 (451)
......| ..-.+|+. |++.+..+.+.+.+.++
T Consensus 230 ~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 230 GTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp CCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ccccCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 1123443 33456776 44444445444444433
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.99 E-value=0.0056 Score=54.66 Aligned_cols=238 Identities=13% Similarity=0.021 Sum_probs=124.3
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--eeeec---cccCCeeEEEEccC---CcEEEEeeC-C-----CcE
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKWH---AHYRAVTCLVFSED---GSFLISGSE-D-----GCV 146 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~-d-----g~i 146 (451)
.....++|.|+|+++++ ...|.|++++ +++. +..+. ........|+|+|+ +..|+.+.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 45789999999996665 5568999998 4432 11111 22456789999998 445544433 2 567
Q ss_pred EEeeCcchhhhhhhhcccccceeccc---CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCC-
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFT---GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKG- 209 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~- 209 (451)
..|+...... ......+..+. ........++|.+++ .+.++.+. .|.|.-++....
T Consensus 108 ~r~~~~~~~~-----~~~~~l~~~~p~~~~~~h~~~~l~~~pdG--~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 108 VRLRHLGERG-----VLDRVVLDGIPARPHGLHSGGRIAFGPDG--MLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEECSSCE-----EEEEEEEEEECCCTTCCCCCCCEEECTTS--CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred EEEEeCCCCc-----CceEEEEEeCCCCCCCCcCCceEEECCCC--CEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 7777642100 00011111122 111123578999887 55555432 256666665420
Q ss_pred -----------ceeeeee-cccceeEEEECC-CCCEEEEEeCCCcE------EEEEccCCCCC-CC-------CC-Ccee
Q 012996 210 -----------RLLRNIV-FPSVIDAIALDP-AEHVFYAGSRDGSI------YIAALNAESPS-TS-------SY-GMHI 261 (451)
Q Consensus 210 -----------~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg~i------~i~d~~~~~~~-~~-------~~-~~~~ 261 (451)
.....+. .......++|+| ++.++++-...+.+ .+.-+..+... .. .. ...+
T Consensus 181 p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp CTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 0111111 123467789999 55555443333321 12222222100 00 00 0122
Q ss_pred eeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCce------EEEeecCCCCeeEEEEEecCceeeecc
Q 012996 262 IGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNI------VRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 262 ~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
+..+ .+......++|..+.++++.-..+.|...++..... ...+-.....+.++++.|||.++++..
T Consensus 261 ~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 261 LYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp SEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred eEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2233 223456778885577777776777888887654321 122222246789999999997666643
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.98 E-value=0.0063 Score=52.27 Aligned_cols=261 Identities=11% Similarity=0.105 Sum_probs=154.2
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
..|.+-|+.++....+..-.. -+.-.+|..+.+|.-. ...+.|+|+++.+.++.+.- ...|.--.|-.+. .|+-.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~A--dsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lV 123 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV 123 (365)
T ss_dssp EEEEEEETTSTTSCEEEECCC--SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEE
T ss_pred CEEEEEECCCCCCcccccccc--ceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEE
Confidence 589999998766554433221 2344588888888765 57899999999988877753 4577777776544 45444
Q ss_pred eCCCcEEEeeCcchhhhhhhhcccccceecccCC----cCceeEEEEeecCCeeEEEEeeC-------CCcEEEEEcCCC
Q 012996 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSASE-------DRTCKVWSLLKG 209 (451)
Q Consensus 141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~~-------d~~i~iwd~~~~ 209 (451)
+. ..|.-|++.. ...+.+.+..| ...|..-..+++. ++++..+- .|.+.+|..+.+
T Consensus 124 T~-taVyHWs~~~----------~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~ 190 (365)
T 2xzh_A 124 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 190 (365)
T ss_dssp ES-SEEEEEESST----------TCCCEEEEECCGGGTTCEEEEEEECTTS--CEEEEEEEEEETTEEEEEEEEEETTTT
T ss_pred cC-CcEEEEcccC----------CCCCceeeecchhcccceEEEEEECCCC--CEEEEEeEeccCCccceeEEEEeeccc
Confidence 43 4899999854 22333333333 2344444444444 66654432 367889988655
Q ss_pred ceeeeee-cccceeEEEEC--CCC-CEEEEEeC---CCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec
Q 012996 210 RLLRNIV-FPSVIDAIALD--PAE-HVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST 279 (451)
Q Consensus 210 ~~~~~~~-~~~~i~~~~~~--~~~-~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 279 (451)
.. +.+. |-..-..+.+. +.. ..|+.+.. .+++++.++.........+..+.+..+. .-..-..+|..++
T Consensus 191 ~s-Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ 269 (365)
T 2xzh_A 191 VS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE 269 (365)
T ss_dssp EE-EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET
T ss_pred cc-ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc
Confidence 32 2222 22222122111 111 12332222 2689999986541111222222222111 1244567788898
Q ss_pred -CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 280 -GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 280 -~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
...+..-+.-|.|.+||+.++.++..-+-...+|..-+-+....-++.....|.|.--.++
T Consensus 270 kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 270 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred cCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 8888888999999999999999999888777777666655554444444455554433333
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.95 E-value=0.022 Score=59.14 Aligned_cols=131 Identities=12% Similarity=0.094 Sum_probs=77.6
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceee--eecCCCCeeEEEECCC
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEV--KSLPAEPIKPIAANSH 91 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~--~~~~~~~v~~~~~~~~ 91 (451)
.|++.+...+..+..+....+ ..|...+ .++..++.+. . +.+.++.++.+.... .......|.|+++.|.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~--~~I~~As----~n~~~vvva~-g-~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~ 564 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQA--KNISVAS----CNSSQVVVAV-G-RALYYLQIHPQELRQISHTEMEHEVACLDITPL 564 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTC--CCCCEEE----ECSSEEEEEE-T-TEEEEEEEETTEEEEEEEEECSSCEEEEECCCC
T ss_pred EEEEEECCCCeEEEEEECCCC--CEEEEEE----eCCCEEEEEE-C-CEEEEEEeeCCceeeecccCCCCceEEEEeecC
Confidence 466666555545545532211 1233222 2234455553 3 778888776544322 2223578999999863
Q ss_pred ------CcEEEEecc-CCCEEEEEcCCCcceeeeccc-cCCeeEEEEc--cCCcEEEEeeCCCcEEEeeCc
Q 012996 92 ------GTYIAGGGQ-SGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--EDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 92 ------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~s~~~dg~i~vwd~~ 152 (451)
+.++++|.. |++|+|+++.+.+.+....-. .....++.+. ....+|..|-.||.+.-+.+.
T Consensus 565 ~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 565 GDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp SSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred CCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 479999997 999999999876655432211 1234444443 234678899999998777653
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.88 E-value=0.0033 Score=54.76 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=109.8
Q ss_pred ccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccC-----CCEEEEEcCCCc---ce--eeeccccCCeeEEE
Q 012996 61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS-----GDIYMWEVASGR---LL--KKWHAHYRAVTCLV 129 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~---~~--~~~~~~~~~v~~~~ 129 (451)
..+.+||..+........ +...........++.+++.|+.+ ..+.+||..+.+ -. ..+.........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 478889988766443221 11111111222357777887755 459999988765 22 22221122222222
Q ss_pred EccCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----C
Q 012996 130 FSEDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----R 199 (451)
Q Consensus 130 ~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~ 199 (451)
+ +++.++.|+.++ .+.+||+.+. ....+......... .+++ ..++ .+++.|+.+ .
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~ 175 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNID---------QWSMLGDMQTAREG-AGLV-VASG--VIYCLGGYDGLNILN 175 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTT---------EEEEEEECSSCCBS-CEEE-EETT--EEEEECCBCSSCBCC
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCC---------eEEECCCCCCCccc-ceEE-EECC--EEEEECCCCCCcccc
Confidence 2 577777777543 5778887542 12222211111111 1122 2244 677777654 4
Q ss_pred cEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 200 TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 200 ~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
.+.+||+.+.+-...-. .+..-.+++. -++.+++.|+.+ ..+.+||+.+.. +..+..+.......
T Consensus 176 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~ 247 (301)
T 2vpj_A 176 SVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYV 247 (301)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred eEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccce
Confidence 58899988765433222 1111112222 256677777664 468899987653 23332222211122
Q ss_pred eEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996 273 TCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (451)
Q Consensus 273 ~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 301 (451)
. ++...+.+++.|+.+ ..|.+||+.+.+
T Consensus 248 ~-~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 248 G-ATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp E-EEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred e-EEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 2 222236677777765 357788887654
No 309
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.88 E-value=0.0036 Score=54.56 Aligned_cols=218 Identities=11% Similarity=0.139 Sum_probs=105.8
Q ss_pred CcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeCCC-----cEEEeeCcchhhhhhh
Q 012996 92 GTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSEDG-----CVRIWSLLTVFEECES 160 (451)
Q Consensus 92 ~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~ 160 (451)
+.+++.|+.+ ..+.+||+.+.+-.. .+......-..+. -++..++.|+.++ .+.+||..+.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~------ 87 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--MAGLVFAVGGFNGSLRVRTVDSYDPVKD------ 87 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEESCBCSSSBCCCEEEEETTTT------
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--ECCEEEEEeCcCCCccccceEEECCCCC------
Confidence 4556666643 358888887664222 1211111111222 2577777887653 4778887542
Q ss_pred hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEcCCCceeeeee--cccceeEEEECCCCCEE
Q 012996 161 QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVF 233 (451)
Q Consensus 161 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l 233 (451)
....+..+...... .+++. .++ .+++.|+.++ .+.+||+.+.+-...-. .+..-.+++. -++.++
T Consensus 88 ---~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iy 159 (302)
T 2xn4_A 88 ---QWTSVANMRDRRST-LGAAV-LNG--LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLY 159 (302)
T ss_dssp ---EEEEECCCSSCCBS-CEEEE-ETT--EEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEE
T ss_pred ---ceeeCCCCCccccc-eEEEE-ECC--EEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEE
Confidence 11122111111111 11222 244 6777776553 57788987765433222 1111122222 256666
Q ss_pred EEEeCC-------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996 234 YAGSRD-------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (451)
Q Consensus 234 ~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 301 (451)
+.|+.+ ..+.+||+.+.. +..+..+....... +++...+.+++.|+.+ ..+.+||+.+.+
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSC-EEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccc-cEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 666542 358888887653 22222222211122 2222236777777764 368899988764
Q ss_pred eEEEeecCCCCeeEEEEEecCceeeeccCCCC
Q 012996 302 IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNP 333 (451)
Q Consensus 302 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~ 333 (451)
-...-.........-+...+++.++.|+.++.
T Consensus 232 W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~ 263 (302)
T 2xn4_A 232 WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS 263 (302)
T ss_dssp EEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred EeeCCCCCCccccCeEEEECCEEEEECCcCCC
Confidence 33221111111122233346777788876643
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.86 E-value=0.004 Score=54.26 Aligned_cols=216 Identities=13% Similarity=0.216 Sum_probs=107.2
Q ss_pred ccEEEEECCCCceeeeec-CCCCe-eEEEECCCCcEEEEeccC-----CCEEEEEcCCCccee--eeccccCCeeEEEEc
Q 012996 61 GSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQS-----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFS 131 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~ 131 (451)
..+..||..+........ +.... .+++ .-++.+++.|+.+ ..+.+||..+.+-.. .+.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 468889988766443321 11111 1222 2267777888755 358899987664322 22211122222222
Q ss_pred cCCcEEEEeeCCC-----cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-------C
Q 012996 132 EDGSFLISGSEDG-----CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-------R 199 (451)
Q Consensus 132 ~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-------~ 199 (451)
++..++.|+.++ .+.+||+.+. ....+..+...... .+++. .++ .+++.|+.+ .
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~ 173 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSN---------EWFHVAPMNTRRSS-VGVGV-VGG--LLYAVGGYDVASRQCLS 173 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTTTEECC
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCC---------eEeecCCCCCcccC-ceEEE-ECC--EEEEEeCCCCCCCcccc
Confidence 577777777654 4677777542 12122111111111 12222 243 666666543 3
Q ss_pred cEEEEEcCCCceeee--eecccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcce
Q 012996 200 TCKVWSLLKGRLLRN--IVFPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 200 ~i~iwd~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v 272 (451)
.+.+||+.+.+-... +..+..-.+++. -++.+++.|+.+ ..+.+||+.+.. +..+..+.......
T Consensus 174 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 174 TVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNA 245 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSC
T ss_pred EEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccC
Confidence 588999887654332 221111122222 256777777654 368899987653 22222222111111
Q ss_pred eEEEEecCCEEEEEcCCC-----cEEEEeCCCCc
Q 012996 273 TCLAYSTGDLLISGSEDG-----MVRVWDPITHN 301 (451)
Q Consensus 273 ~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~ 301 (451)
+++...+.+++.|+.++ .+.+||+.+.+
T Consensus 246 -~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 246 -GVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp -EEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred -eEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 22222366777777654 47888877654
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.78 E-value=0.019 Score=51.45 Aligned_cols=263 Identities=10% Similarity=0.078 Sum_probs=154.6
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
..|.|-|+.++....+..-. --+.-.+|..+.+|.-. ...+.|+|+++...+..+.- ...|.--.|-.+. .|+-.
T Consensus 48 ~~vvIiDl~~~~~~~rrpi~--AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~lV 122 (494)
T 1bpo_A 48 AQVVIIDMNDPSNPIRRPIS--ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV 122 (494)
T ss_dssp CEEEEEETTSTTSCEEEECC--CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEEEE
T ss_pred CeEEEEECCCCCcceecccc--cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEEEE
Confidence 58999999876655443221 23445688888887755 57899999999888877753 3467677776544 44444
Q ss_pred eCCCcEEEeeCcchhhhhhhhcccccceecccCC----cCceeEEEEeecCCeeEEEEee-------CCCcEEEEEcCCC
Q 012996 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG 209 (451)
Q Consensus 141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~ 209 (451)
+. ..|.-|++.. ...+.+.+..| ...|..-..+++. ++++..+ -.|.+.+|....+
T Consensus 123 T~-taVyHWsi~~----------~s~P~kvFdR~~~L~~~QIInY~~d~~~--kW~~l~GI~~~~~~v~G~mQLYS~er~ 189 (494)
T 1bpo_A 123 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 189 (494)
T ss_dssp CS-SEEEEEESSS----------SCCCEEEEECCGGGTTCEEEEEEECTTS--SEEEEEEEEEETTEEEEEEEEEESTTC
T ss_pred cC-CeeEEecccC----------CCCchhheecchhcccceEEEEEECCCC--CeEEEEeecccCCcccceEEEeecccc
Confidence 43 4899999953 22333434333 2345444455554 6666433 2467889998755
Q ss_pred ceeeeeecccceeEEEECCC---CCEEEEEeC---CCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec-
Q 012996 210 RLLRNIVFPSVIDAIALDPA---EHVFYAGSR---DGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST- 279 (451)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~- 279 (451)
.....-.|-..-..+.+..+ ...++.+.. .+++++.++.........+..+.+..+. .-..-..++..++
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~k 269 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETT
T ss_pred ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEeccc
Confidence 43221113222222222211 122333332 3789999996542111122112221111 1234567788999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccCC
Q 012996 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
...+..-+.-|.|.+||+.++.++..-+-...+|..-+-+....-++.....|.|.--.++.
T Consensus 270 ygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred CCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 88888889999999999999999988777667776655554444444444555544444443
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.76 E-value=0.016 Score=50.50 Aligned_cols=217 Identities=11% Similarity=0.096 Sum_probs=110.0
Q ss_pred ccEEEEECCCCceeeeec-CCCCeeEEEECCCCcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccC
Q 012996 61 GSILYWSWSKPQVEVKSL-PAEPIKPIAANSHGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSED 133 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~ 133 (451)
..+.+||..+........ +..........-++.+++.|+.+ ..+.+||..+.+-.. .+.........+.+ +
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~ 101 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--E 101 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--T
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--C
Confidence 678899988776543321 11111111122357777887755 568899987764322 22211112222222 5
Q ss_pred CcEEEEeeCC------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC---------C
Q 012996 134 GSFLISGSED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE---------D 198 (451)
Q Consensus 134 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~---------d 198 (451)
+++++.|+.+ ..+.+||..+. ....+..+...... .+++ ..++ .+++.|+. -
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTE---------SWHTKPSMLTQRCS-HGMV-EANG--LIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTT---------EEEEECCCSSCCBS-CEEE-EETT--EEEEECCEESCTTTCEEC
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCC---------ceEeCCCCcCCcce-eEEE-EECC--EEEEECCCCCCCCccccc
Confidence 7777787765 45888888552 11111111111111 1112 2244 56666653 3
Q ss_pred CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcc
Q 012996 199 RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKA 271 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (451)
..+.+||+.+.+-...-. .+..-.+++.. ++++++.|+.+ ..+.+||+.+.. +..+..+......
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVT 240 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSC
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccc
Confidence 458899998775332222 11111222222 56677776654 368889987753 2333222222222
Q ss_pred eeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996 272 VTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (451)
Q Consensus 272 v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 301 (451)
..++.+ .+.+++.|+.+ ..+.+||+.+.+
T Consensus 241 ~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 241 VKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred eeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 222222 36777777754 458888887753
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.72 E-value=0.018 Score=51.27 Aligned_cols=237 Identities=12% Similarity=0.031 Sum_probs=122.0
Q ss_pred CCeeEEEECCCCc-EEEEeccCCCEEEEEcCCCcce---eee----ccccCCeeEEEEccC---CcEEEEe-eC------
Q 012996 81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASGRLL---KKW----HAHYRAVTCLVFSED---GSFLISG-SE------ 142 (451)
Q Consensus 81 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~----~~~~~~v~~~~~~~~---~~~l~s~-~~------ 142 (451)
.....|+|.|+|+ ++++ ...|.|++++. .+... ..+ .........|+|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4568999999999 6655 56789999984 33321 111 122345689999995 4444433 22
Q ss_pred -CCcEEEeeCcchhhhhhhhcccccceeccc-----CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEE
Q 012996 143 -DGCVRIWSLLTVFEECESQRASHLYLHSFT-----GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKV 203 (451)
Q Consensus 143 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~i 203 (451)
...|..|++........ .....+..+. .|. ...++|.+++ .+.++.+. .|.|.-
T Consensus 96 ~~~~v~r~~~~~~~~~~~---~~~~i~~~~p~~~~~~h~--~~~l~~~pdG--~Lyv~~Gd~~~~~~~q~~~~~~g~I~r 168 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVT---DFRTVFRQMPKLSTGNHF--GGRLVFDGKG--YLFIALGENNQRPTAQDLDKLQGKLVR 168 (353)
T ss_dssp EEEEEEEEEECTTSSBEE---EEEEEEECSSCCBSSSCC--CCCEEECSSS--EEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred ceeEEEEEEECCCCCCCC---ceEEEEEECCCCCCCccc--CccEEECCCC--cEEEEECCCCCCCccCCCCCCCeEEEE
Confidence 22465565532100000 0011111111 232 3568999987 55555432 246777
Q ss_pred EEcCCCc------------eeeeee-cccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCC---------------
Q 012996 204 WSLLKGR------------LLRNIV-FPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPS--------------- 253 (451)
Q Consensus 204 wd~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~--------------- 253 (451)
++....- ....+. .......++|+|....|+++... +.=.+.-+..+..-
T Consensus 169 i~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~ 248 (353)
T 2g8s_A 169 LTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK 248 (353)
T ss_dssp EETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred ECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence 7764320 111222 22357789999944444444322 11122211111100
Q ss_pred -------CCCCCceeeeeeccCCcceeEEEEec--------CCEEEEEcCCCcEEEEeCCCCceEEEe---ecCCCCeeE
Q 012996 254 -------TSSYGMHIIGSLSDHSKAVTCLAYST--------GDLLISGSEDGMVRVWDPITHNIVRMF---RLAKGPVNN 315 (451)
Q Consensus 254 -------~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~ 315 (451)
.......++..+. +...+..+.|.. +.++++.-..+.|...++..++.+... ......+..
T Consensus 249 ~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~ 327 (353)
T 2g8s_A 249 IPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRD 327 (353)
T ss_dssp CTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEE
T ss_pred cCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeE
Confidence 0000011222222 234567788863 556776667788888887766544332 122357899
Q ss_pred EEEEecCceeee
Q 012996 316 ILVVRRPLYLNL 327 (451)
Q Consensus 316 l~~s~~~~~l~~ 327 (451)
+++.|||.++++
T Consensus 328 v~~~pdG~lyv~ 339 (353)
T 2g8s_A 328 VRTGPDGYLYVL 339 (353)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCcEEEE
Confidence 999999986664
No 314
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.69 E-value=0.024 Score=50.16 Aligned_cols=226 Identities=13% Similarity=0.094 Sum_probs=126.7
Q ss_pred CCeeEEEECCCCcEEEEec------------cCCCEEEEEcCCC--cce-eeecc-----ccCCeeEEEEcc--CCc-EE
Q 012996 81 EPIKPIAANSHGTYIAGGG------------QSGDIYMWEVASG--RLL-KKWHA-----HYRAVTCLVFSE--DGS-FL 137 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~--~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l 137 (451)
.....+...|+|..+++++ .+|.|.++|..+. +.. ..+.+ ..-....+.+.+ ++. +|
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3566777888876655542 6899999998743 211 11222 234667788766 343 34
Q ss_pred EEe-eC--CCcEEEeeCcchhhhhhhhcccccceecccCC-cCceeEEEEeecCCeeEEEEee-----------------
Q 012996 138 ISG-SE--DGCVRIWSLLTVFEECESQRASHLYLHSFTGH-TLRITDIVIGYGGVSATIVSAS----------------- 196 (451)
Q Consensus 138 ~s~-~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~l~s~~----------------- 196 (451)
+.+ .. +.+|.+|++.... .....+..+.+. -...+++.+.+++ .+.++..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~-------~~~~~~~~~~g~~~~~pND~~v~~~G--~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHKLLPSVNDIVAVGPE--HFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTT-------TEEEEEEEECCTTCSSEEEEEEEETT--EEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEECCCCCCeEEEEEEECCC-------CEEEEEeccccCCCCCCceEEEeCCC--CEEecCCcEeCCcccccchhhccC
Confidence 443 22 4678888874311 112233333332 2457889999887 6666643
Q ss_pred CCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEE
Q 012996 197 EDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 197 ~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 275 (451)
..|.|..+|. ++.......-...+.++|+|+++.|+++. ..+.|+.|++..... ......+ ......-.+
T Consensus 201 ~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~------l~~~~~~-~~~g~PDGi 271 (355)
T 3sre_A 201 AWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT------LTPLRVL-SFDTLVDNI 271 (355)
T ss_dssp CCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC------EEEEEEE-ECSSEEEEE
T ss_pred CccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc------EecCEEE-eCCCCCceE
Confidence 1245555654 33222222335678899999999888775 567899999874211 0111222 224566778
Q ss_pred EEec--CCEEEEEcCC-CcEEEEeCC--CCceEEEeec---CCCCeeEEEEEecCcee
Q 012996 276 AYST--GDLLISGSED-GMVRVWDPI--THNIVRMFRL---AKGPVNNILVVRRPLYL 325 (451)
Q Consensus 276 ~~~~--~~~l~s~~~d-g~i~iwd~~--~~~~~~~~~~---~~~~v~~l~~s~~~~~l 325 (451)
++.+ |++.+++..+ +.|..|+.. .+..+..++. -...+..+ |..||+.|
T Consensus 272 ~vD~e~G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~l 328 (355)
T 3sre_A 272 SVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTVL 328 (355)
T ss_dssp EECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSSC
T ss_pred EEeCCCCcEEEEecCCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCEE
Confidence 8876 5555555444 345555654 2455555542 22344444 55577655
No 315
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.67 E-value=0.026 Score=50.25 Aligned_cols=239 Identities=13% Similarity=0.044 Sum_probs=123.8
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCc-ceeeec---cccCCeeEEEEccC---CcEEEEeeC----C----Cc
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGR-LLKKWH---AHYRAVTCLVFSED---GSFLISGSE----D----GC 145 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~s~~~----d----g~ 145 (451)
.....|+|.|+|+++++ ..+|.|++++ .+++ .+..+. ........|+++|+ +..|+.+.. + ..
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 46789999999986665 5569999997 4554 222111 12356789999997 444444332 2 56
Q ss_pred EEEeeCcchhhhhhhhcccccceeccc-CCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCCce
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFT-GHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGRL 211 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~ 211 (451)
|..|+........ ......+..+. ........++|.+++ .++++.+. .|.|.-++.. ++.
T Consensus 107 v~r~~~~~~~~~~---~~~~~l~~~~~~~~~h~~~~l~~~pDG--~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~ 180 (354)
T 3a9g_A 107 VIRGRLDGSTFKL---KEVKTLIDGIPGAYIHNGGRIRFGPDG--MLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRP 180 (354)
T ss_dssp EEEEEECSSSCCE---EEEEEEEEEEECCSSCCCCCEEECTTS--CEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCC
T ss_pred EEEEEECCCCcCc---CccEEEEEcCCCCCCcCCceEEECCCC--cEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCC
Confidence 7777664310000 00001111111 111123578898887 55555432 2456666553 221
Q ss_pred --------eeeee-cccceeEEEECC-CCCEEEEEeCCC---cEEEEEccCCCC-CCC-------CCC-ceeeeeeccCC
Q 012996 212 --------LRNIV-FPSVIDAIALDP-AEHVFYAGSRDG---SIYIAALNAESP-STS-------SYG-MHIIGSLSDHS 269 (451)
Q Consensus 212 --------~~~~~-~~~~i~~~~~~~-~~~~l~~~~~dg---~i~i~d~~~~~~-~~~-------~~~-~~~~~~~~~~~ 269 (451)
...+. .......++|+| ++.++++-...+ .|.+.. .+.. -.. ... ..++..+....
T Consensus 181 p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ 258 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSET 258 (354)
T ss_dssp CTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCC
T ss_pred CCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCC
Confidence 11111 123456899999 555444433222 233332 1110 000 000 01222231123
Q ss_pred cceeEEEEe-------c-CCEEEEEcCCCcEEEEeCCCC-ceE--EEee-cCCCCeeEEEEEecCceeeecc
Q 012996 270 KAVTCLAYS-------T-GDLLISGSEDGMVRVWDPITH-NIV--RMFR-LAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 270 ~~v~~~~~~-------~-~~~l~s~~~dg~i~iwd~~~~-~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~s 329 (451)
.....++|. . +.++++.-..+.|...++... ... ..+. .....+.++++.|||.+.++..
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 457778883 3 667777667778888888753 332 2222 2245789999999997666553
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.62 E-value=0.028 Score=48.87 Aligned_cols=225 Identities=9% Similarity=0.061 Sum_probs=113.3
Q ss_pred EEEeecCCC--CCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---CccEEEEECCCCceeeee
Q 012996 3 LLIASSSVA--DTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SGSILYWSWSKPQVEVKS 77 (451)
Q Consensus 3 ~~l~s~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g~i~vw~~~~~~~~~~~ 77 (451)
.+++.|+ . ...+.+||..+++-.. +.....+.....+ ...++..++.||.+ -..+.+||..+.......
T Consensus 13 ~l~~~GG-~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~----~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~ 86 (306)
T 3ii7_A 13 YRIALFG-GSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAAC----VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL 86 (306)
T ss_dssp EEEEEEC-CSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEE----EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE
T ss_pred eEEEEeC-CCCCceEEEecCCCCCEec-CCCCCcccceeEE----EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC
Confidence 4555665 3 4678999988776432 2211111111111 22355666666532 157888998877654332
Q ss_pred c-CCCCeeEEEECCCCcEEEEeccC------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeC------
Q 012996 78 L-PAEPIKPIAANSHGTYIAGGGQS------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE------ 142 (451)
Q Consensus 78 ~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~------ 142 (451)
. +.......+..-++.+++.|+.+ ..+.+||..+.+-.. .+......-..+. -++++++.|+.
T Consensus 87 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 87 GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTT
T ss_pred CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCc
Confidence 2 11111111112267777887765 458999987764322 2221111112222 25677777764
Q ss_pred ---CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeee
Q 012996 143 ---DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRN 214 (451)
Q Consensus 143 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~ 214 (451)
-..+.+||+.+. ....+..+...... .+++. .++ .+++.|+.+ ..+.+||+.+.+-...
T Consensus 165 ~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 165 GRVLNSCEVYDPATE---------TWTELCPMIEARKN-HGLVF-VKD--KIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CEECCCEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccccceEEEeCCCCC---------eEEECCCccchhhc-ceEEE-ECC--EEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 234788888652 12222111111111 11222 244 677776653 3588999887653322
Q ss_pred --eeccc-ceeEEEECCCCCEEEEEeCC-----CcEEEEEccCC
Q 012996 215 --IVFPS-VIDAIALDPAEHVFYAGSRD-----GSIYIAALNAE 250 (451)
Q Consensus 215 --~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 250 (451)
+..+. ...++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 232 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 232 SPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 11111 1222333 66777777754 46788888765
No 317
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.59 E-value=0.013 Score=51.22 Aligned_cols=218 Identities=11% Similarity=0.100 Sum_probs=104.9
Q ss_pred CCcEEEEeccC----CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEeeC----C-----CcEEEeeCcchh
Q 012996 91 HGTYIAGGGQS----GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISGSE----D-----GCVRIWSLLTVF 155 (451)
Q Consensus 91 ~~~~l~~~~~d----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~~~~ 155 (451)
++.+++.|+.+ ..+.+||..+.+-.. .+......- +++. .++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~- 100 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN- 100 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT-
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC-
Confidence 45666666632 358888887664322 121111111 2222 25677777775 2 35788887552
Q ss_pred hhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCCceeeeee--cccceeEEEECC
Q 012996 156 EECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDP 228 (451)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~ 228 (451)
....+..+....... +++. .++ .+++.|+.+ ..+.+||+.+.+-...-. .+..-.+++..
T Consensus 101 --------~W~~~~~~p~~r~~~-~~~~-~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 167 (308)
T 1zgk_A 101 --------QWSPCAPMSVPRNRI-GVGV-IDG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL- 167 (308)
T ss_dssp --------EEEECCCCSSCCBTC-EEEE-ETT--EEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-
T ss_pred --------eEeECCCCCcCcccc-EEEE-ECC--EEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-
Confidence 111111111111111 1122 244 666666643 358889988765433222 11111122222
Q ss_pred CCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCC-----CcEEEEeCC
Q 012996 229 AEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSED-----GMVRVWDPI 298 (451)
Q Consensus 229 ~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~ 298 (451)
++.+++.|+.+ ..+.+||+.+.. +..+..+......-. ++...+.+++.|+.+ ..+.+||+.
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE-------WRMITAMNTIRSGAG-VCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCE-EEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe-------EeeCCCCCCccccce-EEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 56677777654 458888887653 222222221111222 222236677777664 458999988
Q ss_pred CCceEEEeecCCCCeeEEEEEecCceeeeccCCC
Q 012996 299 THNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
+.+-...-..........+..-+++.++.|+.++
T Consensus 240 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 273 (308)
T 1zgk_A 240 TETWTFVAPMKHRRSALGITVHQGRIYVLGGYDG 273 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEETTEEEEECCBCS
T ss_pred CCcEEECCCCCCCccceEEEEECCEEEEEcCcCC
Confidence 7643322111111111122233677778887654
No 318
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.58 E-value=0.015 Score=50.83 Aligned_cols=216 Identities=11% Similarity=0.114 Sum_probs=107.2
Q ss_pred ccEEEEECCCCceeeeec-CCCCe-eEEEECCCCcEEEEecc----C-----CCEEEEEcCCCccee--eeccccCCeeE
Q 012996 61 GSILYWSWSKPQVEVKSL-PAEPI-KPIAANSHGTYIAGGGQ----S-----GDIYMWEVASGRLLK--KWHAHYRAVTC 127 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~-~~~~v-~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~ 127 (451)
..+.+||..+........ +.... .+++ .-++.+++.|+. + ..+.+||..+.+-.. .+.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 578899988766543321 11111 1222 225777777775 2 468899987764222 22211122222
Q ss_pred EEEccCCcEEEEeeCC-----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC----
Q 012996 128 LVFSEDGSFLISGSED-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED---- 198 (451)
Q Consensus 128 ~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d---- 198 (451)
+.+ ++++++.|+.+ ..+.+||+.+. ....+..+......- +++. .++ .+++.|+.+
T Consensus 118 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~~-~~~~-~~~--~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 118 GVI--DGHIYAVGGSHGCIHHNSVERYEPERD---------EWHLVAPMLTRRIGV-GVAV-LNR--LLYAVGGFDGTNR 182 (308)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTT---------EEEECCCCSSCCBSC-EEEE-ETT--EEEEECCBCSSCB
T ss_pred EEE--CCEEEEEcCCCCCcccccEEEECCCCC---------eEeECCCCCccccce-EEEE-ECC--EEEEEeCCCCCCc
Confidence 222 57777777654 35778887542 111111111111111 1222 244 677777654
Q ss_pred -CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeeccCCc
Q 012996 199 -RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLSDHSK 270 (451)
Q Consensus 199 -~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 270 (451)
..+.+||+.+.+-...-. .+..-.+++.. ++.+++.|+.+ ..+.+||+.+.. +..+..+.....
T Consensus 183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~ 254 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRRS 254 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCCB
T ss_pred CceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-------EEECCCCCCCcc
Confidence 458899988765332211 11111222222 66777777654 468899987753 222222221111
Q ss_pred ceeEEEEecCCEEEEEcCC-----CcEEEEeCCCCc
Q 012996 271 AVTCLAYSTGDLLISGSED-----GMVRVWDPITHN 301 (451)
Q Consensus 271 ~v~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 301 (451)
.. +++...+.+++.|+.+ ..+.+||+.+.+
T Consensus 255 ~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 255 AL-GITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SC-EEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred ce-EEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11 2222236677777654 346777776653
No 319
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.56 E-value=0.0027 Score=56.72 Aligned_cols=152 Identities=12% Similarity=0.135 Sum_probs=94.0
Q ss_pred eccCcccCCCCCCccEEEEECCCCc-eeeeecC----CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--------
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQ-VEVKSLP----AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL-------- 114 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~-~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------- 114 (451)
.+|..++++-. +.||.-++.... ....... -..|..+..+|+|++||..+. ..|.|-.+..+..
T Consensus 30 ~n~t~i~~a~~--n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQD--NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEET--TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEEC--CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34555544443 678877876332 2222222 236889999999999999765 4788988863321
Q ss_pred ----eeeecc------ccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEE
Q 012996 115 ----LKKWHA------HYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDI 181 (451)
Q Consensus 115 ----~~~~~~------~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 181 (451)
.+.+.- ...+|..+.|+| .+..|++-..|+.|++||+........ ..........+......|.++
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~ 185 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDL 185 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEE
Confidence 112221 246799999999 457899999999999999976322111 111111111223344678899
Q ss_pred EEeecCCeeEEEE--eeCCCcEEEEE
Q 012996 182 VIGYGGVSATIVS--ASEDRTCKVWS 205 (451)
Q Consensus 182 ~~~~~~~~~~l~s--~~~d~~i~iwd 205 (451)
+|..++ -.|+. .+.+|.|+-.-
T Consensus 186 ~Fg~~~--lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 186 EFSKDG--LTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EECTTS--SCEEEEECTTSCEEEEES
T ss_pred EEcCCC--cEEEEEecCCCCCEEEEC
Confidence 998876 44444 44778776543
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.55 E-value=0.016 Score=50.83 Aligned_cols=223 Identities=12% Similarity=0.058 Sum_probs=110.0
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCC-CCceEEecceEeeccCcccCCCC-----C-C----ccEEEEECCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASP-PHGLACVGQRFLASSQLREQPSA-----S-S----GSILYWSWSK 70 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~-----d-~----g~i~vw~~~~ 70 (451)
|.+++.|+ ..+.+||..+++-.. .....+ +..-.++ ...++..++.||. . . ..+.+||..+
T Consensus 5 ~~l~~~GG---~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~---~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 5 DLIFMISE---EGAVAYDPAANECYC--ASLSSQVPKNHVSL---VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEEEEET---TEEEEEETTTTEEEE--EECCCCSCSSEEEE---ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred eEEEEEcC---CceEEECCCCCeEec--CCCCCCCCccceEE---EEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 45666666 469999998887543 111111 1222222 2345666666662 1 0 2377888877
Q ss_pred Cceeeeec-CCC--CeeEEEECCCCcEEEEeccC--------CCEEEEEcCCCcce--eeeccccCCeeEEEEccCCcEE
Q 012996 71 PQVEVKSL-PAE--PIKPIAANSHGTYIAGGGQS--------GDIYMWEVASGRLL--KKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 71 ~~~~~~~~-~~~--~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l 137 (451)
........ +.. ....+.+ ++.+++.|+.+ ..+.+||..+.+-. ..+......-..+. .+++.+
T Consensus 77 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iy 152 (315)
T 4asc_A 77 SEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVY 152 (315)
T ss_dssp TEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEE
T ss_pred CeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEE
Confidence 66432211 111 1112222 56777777742 45899998776422 22221111112222 356777
Q ss_pred EEeeC-C-----CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC-----cEEEEEc
Q 012996 138 ISGSE-D-----GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR-----TCKVWSL 206 (451)
Q Consensus 138 ~s~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~-----~i~iwd~ 206 (451)
+.|+. + ..+.+||+.+. ....+......... .+++ ..++ .+++.|+.++ .+.+||+
T Consensus 153 v~GG~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~~~~~~~~~~~~yd~ 219 (315)
T 4asc_A 153 VIGGKGSDRKCLNKMCVYDPKKF---------EWKELAPMQTARSL-FGAT-VHDG--RIIVAAGVTDTGLTSSAEVYSI 219 (315)
T ss_dssp EECCBCTTSCBCCCEEEEETTTT---------EEEECCCCSSCCBS-CEEE-EETT--EEEEEEEECSSSEEEEEEEEET
T ss_pred EEeCCCCCCcccceEEEEeCCCC---------eEEECCCCCCchhc-eEEE-EECC--EEEEEeccCCCCccceEEEEEC
Confidence 77776 2 35888888652 11111111111111 1122 2244 6777777654 5888998
Q ss_pred CCCceeeeee--cccceeEEEECCCCCEEEEEeCCC--------------cEEEEEccCC
Q 012996 207 LKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG--------------SIYIAALNAE 250 (451)
Q Consensus 207 ~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg--------------~i~i~d~~~~ 250 (451)
.+.+-...-. .+..-.+++.. ++.+++.|+.++ .+.+||+.+.
T Consensus 220 ~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 220 TDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCCeEEECCCCCCcccceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 8764333222 11111222222 556777776532 3667777664
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0046 Score=54.25 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=71.1
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEec-ceEeeccCcccCC-CCCCccEEEEECCCCceeeeec-
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVG-QRFLASSQLREQP-SASSGSILYWSWSKPQVEVKSL- 78 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~~~-~~d~g~i~vw~~~~~~~~~~~~- 78 (451)
+.+++.++ .||.|.-.|..+|+...+++.. ....+.... .....++..++.. ..| |.|..++..++.......
T Consensus 10 ~~~V~v~t-~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-G~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 10 SDILIAAD-VEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-GNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEEEEE-TTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-TEEEEEETTTEEEEEEEEH
T ss_pred CCEEEEEe-CCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-CEEEEEECCCCcEEeeecc
Confidence 35778888 8999999999999999988654 101111111 0010122333333 345 999999988775443322
Q ss_pred ----CCCCeeE---EEE-----CCCCcEEEEeccCCCEEEEEcCCCcceeeecc
Q 012996 79 ----PAEPIKP---IAA-----NSHGTYIAGGGQSGDIYMWEVASGRLLKKWHA 120 (451)
Q Consensus 79 ----~~~~v~~---~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 120 (451)
...++.. ... +..+..+++|+.+|.+.-.|+.+|+.+..+..
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1122221 000 01456788999999999999999999988853
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.51 E-value=0.0066 Score=62.62 Aligned_cols=190 Identities=11% Similarity=0.117 Sum_probs=118.2
Q ss_pred EeeccCcccCCCCCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC-Ccceeeeccc---
Q 012996 46 FLASSQLREQPSASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS-GRLLKKWHAH--- 121 (451)
Q Consensus 46 ~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~--- 121 (451)
.+|..+.+|.-.. .++.|+|+++..........++|..=.|-.+.. |+..+. ..|+.|++.. ..+...+..|
T Consensus 73 MnP~~~iiALrag--~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~-l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKAG--KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT-VALVTD-NAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEecC--CeEEEeehHHhhhhcccccCCCceEEEecCCCe-eEEEcC-CeEEEeccCCCCccHHHHhcchhc
Confidence 6677777776653 799999998777655555567888888865444 433333 4799999964 3445555544
Q ss_pred -cCCeeEEEEccCCcEEEEee-------CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCe-eEE
Q 012996 122 -YRAVTCLVFSEDGSFLISGS-------EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVS-ATI 192 (451)
Q Consensus 122 -~~~v~~~~~~~~~~~l~s~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-~~l 192 (451)
...|..-..+++.++++..| -.|.+.+|.++.. ..+.+.||.+.-..+........ ..+
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~------------~sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK------------VSQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc------------cchhhhHhHhhhheeccCCCCCCceEE
Confidence 35666777788888877433 3578899988542 23334555544433333211111 222
Q ss_pred EEeeC---CCcEEEEEcCCC---ceee-----eeec-----ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCC
Q 012996 193 VSASE---DRTCKVWSLLKG---RLLR-----NIVF-----PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAES 251 (451)
Q Consensus 193 ~s~~~---d~~i~iwd~~~~---~~~~-----~~~~-----~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 251 (451)
+.+.. .+.++|.++... .... .+.. ..-..++..++....++.-+.-|.|++||+.++.
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence 22211 368888888543 1111 0111 2234577888888899999999999999999975
No 323
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.51 E-value=0.014 Score=52.23 Aligned_cols=236 Identities=13% Similarity=0.067 Sum_probs=112.9
Q ss_pred ccCcccCCCCCCccEEEEECCC--Cceeeeec-C-CCCe-eEEEECCCCcEEEEecc-C---------CCEEEEEcCCCc
Q 012996 49 SSQLREQPSASSGSILYWSWSK--PQVEVKSL-P-AEPI-KPIAANSHGTYIAGGGQ-S---------GDIYMWEVASGR 113 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~--~~~~~~~~-~-~~~v-~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~ 113 (451)
++...+.||.+...+.+||... ........ + .... .+++. -++.+++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5667777776657899999874 33222211 1 1111 12222 25777777776 2 468999987764
Q ss_pred cee--eec-cccCCeeEEEEccCCcEEEEeeCC---------------------------------------CcEEEeeC
Q 012996 114 LLK--KWH-AHYRAVTCLVFSEDGSFLISGSED---------------------------------------GCVRIWSL 151 (451)
Q Consensus 114 ~~~--~~~-~~~~~v~~~~~~~~~~~l~s~~~d---------------------------------------g~i~vwd~ 151 (451)
-.. .+. .......++. .++++++.|+.+ ..+.+||+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 222 222 1111112222 467777888764 46888887
Q ss_pred cchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC------CCcEEEEEc--CCCceee--eeecccc-
Q 012996 152 LTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE------DRTCKVWSL--LKGRLLR--NIVFPSV- 220 (451)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~------d~~i~iwd~--~~~~~~~--~~~~~~~- 220 (451)
.+ .....+..+......-.+++. .++ .+++.|+. ...+.+||+ .+.+-.. .+..+..
T Consensus 176 ~~---------~~W~~~~~~p~~~~~~~~~~~-~~~--~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~ 243 (357)
T 2uvk_A 176 ST---------QQWSYAGESPWYGTAGAAVVN-KGD--KTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243 (357)
T ss_dssp TT---------TEEEEEEECSSCCCBSCEEEE-ETT--EEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCC
T ss_pred CC---------CcEEECCCCCCCCcccccEEE-ECC--EEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccc
Confidence 55 222222222111111012222 233 56666653 345777876 4433222 1111111
Q ss_pred eeEEEECCCCCEEEEEeCC----------------------CcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEe
Q 012996 221 IDAIALDPAEHVFYAGSRD----------------------GSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
....+...++.+++.|+.+ ..+.+||+.+.. +..+..+......-.++. .
T Consensus 244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~-~ 315 (357)
T 2uvk_A 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-------WDKSGELSQGRAYGVSLP-W 315 (357)
T ss_dssp BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----------CEEEEECSSCCBSSEEEE-E
T ss_pred ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-------eeeCCCCCCCcccceeEE-e
Confidence 1111222356677777632 257788887653 344443333222222222 2
Q ss_pred cCCEEEEEcCCC------cEEEEeCCCCceEEEee
Q 012996 279 TGDLLISGSEDG------MVRVWDPITHNIVRMFR 307 (451)
Q Consensus 279 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~ 307 (451)
.+.+++.|+.++ .|.++++++++.+....
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 377778887543 35666888777665543
No 324
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.45 E-value=0.0093 Score=53.35 Aligned_cols=135 Identities=10% Similarity=0.142 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCceeeeeecc----c-ceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC----CCceeeeeecc-
Q 012996 198 DRTCKVWSLLKGRLLRNIVFP----S-VIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS----YGMHIIGSLSD- 267 (451)
Q Consensus 198 d~~i~iwd~~~~~~~~~~~~~----~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~~- 267 (451)
++.||.-++......+.+..+ . .+..+..+|+|++|+..+ +..|.+..+..+...... ...+ ...+.-
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~ 117 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSID 117 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcC
Confidence 477888888755555555543 2 678899999999999886 457889888843221111 0011 111111
Q ss_pred -----CCcceeEEEEec----CCEEEEEcCCCcEEEEeCCCC--ceEEEee---------cCCCCeeEEEEEecCceeee
Q 012996 268 -----HSKAVTCLAYST----GDLLISGSEDGMVRVWDPITH--NIVRMFR---------LAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 268 -----~~~~v~~~~~~~----~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---------~~~~~v~~l~~s~~~~~l~~ 327 (451)
...+|..+.|+| +..|++-..|+.|++||+... ++. .++ .....|.+++|.+++-.|..
T Consensus 118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 357899999999 568999999999999999752 222 222 12246778888886655544
Q ss_pred --ccCCCCcc
Q 012996 328 --GSFSNPHT 335 (451)
Q Consensus 328 --~s~d~~i~ 335 (451)
.+..|-|+
T Consensus 197 l~~t~~GDIY 206 (452)
T 3pbp_A 197 LNTTEGGDIF 206 (452)
T ss_dssp EECTTSCEEE
T ss_pred EecCCCCCEE
Confidence 33444443
No 325
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.44 E-value=0.043 Score=48.89 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=114.5
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-eee-----cCCCCeeEEEECCC---CcEEEEecc-C-----CC
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VKS-----LPAEPIKPIAANSH---GTYIAGGGQ-S-----GD 103 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~~-----~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 103 (451)
-..++ |.|+|+++++ ... |.|.+++ . +... ... ........|+|+|+ +..|.++.. . +.
T Consensus 33 P~~ia--~~pdG~l~V~-e~~-g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 33 PWALA--FLPDGGMLIA-ERP-GRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp EEEEE--ECTTSCEEEE-ETT-TEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred ceEEE--EcCCCeEEEE-eCC-CeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 44556 9999985554 444 8999998 3 3322 111 12457899999998 444444332 2 56
Q ss_pred EEEEEcCCCc-----ce-eeec---cccCCeeEEEEccCCcEEEEeeCC-------------CcEEEeeCcchhhhhhhh
Q 012996 104 IYMWEVASGR-----LL-KKWH---AHYRAVTCLVFSEDGSFLISGSED-------------GCVRIWSLLTVFEECESQ 161 (451)
Q Consensus 104 i~iwd~~~~~-----~~-~~~~---~~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~~~ 161 (451)
|..|+...+. .+ ..+. ........++|.|||.+.++.+.. |.|.-++...........
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf 186 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPF 186 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcc
Confidence 8888876432 11 1132 111234689999999876665432 455555543200000000
Q ss_pred ---cccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCCcE------EEEEcCCCc------------------eee
Q 012996 162 ---RASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDRTC------KVWSLLKGR------------------LLR 213 (451)
Q Consensus 162 ---~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~~i------~iwd~~~~~------------------~~~ 213 (451)
......+. ..++ .....++|++ .+ .++++-.....+ .+.-+..+. +..
T Consensus 187 ~~~~~~~~~i~-a~G~-rnp~g~a~d~~~g--~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 187 LGRRGARPEVY-SLGH-RNPQGLAWHPKTG--ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp TTCTTSCTTEE-EECC-SEECCCEECTTTC--CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred cCCCCCCccEE-EEcC-CCcccEEEECCCC--CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00000011 1122 2346678887 44 444443322221 122222222 111
Q ss_pred eeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEc
Q 012996 214 NIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.+........++| .++..+++....+.|...++........ ......+......+..+++.| |.++++..
T Consensus 263 ~~~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 263 FWPQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWR---VLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ECTTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEE---EEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ecCCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCccee---ecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 2222234556777 4666666666667788887765421000 000111112235788899988 76665543
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.42 E-value=0.052 Score=47.41 Aligned_cols=217 Identities=8% Similarity=0.024 Sum_probs=107.4
Q ss_pred ccEEEEECCCCceeeeecC--CCCeeEEEECCCCcEEEEecc----C-------CCEEEEEcCCCccee--eeccccCCe
Q 012996 61 GSILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----S-------GDIYMWEVASGRLLK--KWHAHYRAV 125 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~--~~~~~~~~v 125 (451)
..+..||..+.+......+ ...........++.+++.|+. + ..+.+||..+.+-.. .+.......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 4688899888775433221 123333334457777777773 1 127788887664321 121111111
Q ss_pred eEEEEccCCcEEEEeeCC--------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC
Q 012996 126 TCLVFSEDGSFLISGSED--------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE 197 (451)
Q Consensus 126 ~~~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~ 197 (451)
..+.+ ++..++.|+.+ ..+.+||+.+. ....+..+...... .+++ ..++ .+++.|+.
T Consensus 93 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~-~~~~-~~~~--~iyv~GG~ 157 (315)
T 4asc_A 93 GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSF---------KWGESDPLPYVVYG-HTVL-SHMD--LVYVIGGK 157 (315)
T ss_dssp EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTT---------EEEECCCCSSCCBS-CEEE-EETT--EEEEECCB
T ss_pred eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCC---------cEeECCCCCCcccc-eeEE-EECC--EEEEEeCC
Confidence 12222 56777777742 35888888552 11111111111111 1122 2344 67777765
Q ss_pred -C-----CcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCCC-----cEEEEEccCCCCCCCCCCceeeee
Q 012996 198 -D-----RTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRDG-----SIYIAALNAESPSTSSYGMHIIGS 264 (451)
Q Consensus 198 -d-----~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~ 264 (451)
+ ..+.+||+.+.+-...-. .+..-.+++. -++++++.|+.++ .+.+||+.+.. +..+..
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~ 229 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK-------WAPFEA 229 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE-------EEEECC
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe-------EEECCC
Confidence 2 468999988765332222 1111122222 2667777777654 57888887653 233322
Q ss_pred eccCCcceeEEEEecCCEEEEEcCCC--------------cEEEEeCCCCc
Q 012996 265 LSDHSKAVTCLAYSTGDLLISGSEDG--------------MVRVWDPITHN 301 (451)
Q Consensus 265 ~~~~~~~v~~~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~ 301 (451)
+........ ++...+.+++.|+.++ .+.+||+.+.+
T Consensus 230 ~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 230 FPQERSSLS-LVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp CSSCCBSCE-EEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred CCCccccee-EEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 222112222 2222366777776532 36677876654
No 327
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.39 E-value=0.062 Score=47.35 Aligned_cols=245 Identities=11% Similarity=0.013 Sum_probs=129.7
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcc--eeee----ccccCCeeEEEEccC----CcEEEEe--eCCCcEE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRL--LKKW----HAHYRAVTCLVFSED----GSFLISG--SEDGCVR 147 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~----~~~~~~v~~~~~~~~----~~~l~s~--~~dg~i~ 147 (451)
-.....|+|.|+|+++++--..|.|++++..++.. +..+ .........|+++|+ +.+.++- ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 45678999999999887755589999998655543 2111 223456789999995 4333332 2345566
Q ss_pred EeeCcchhhhhhhhcccccceecc---cCCcCceeEEEEeecCCeeEEEEeeC-------------CCcEEEEEcCCCce
Q 012996 148 IWSLLTVFEECESQRASHLYLHSF---TGHTLRITDIVIGYGGVSATIVSASE-------------DRTCKVWSLLKGRL 211 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~i~~~~~~~~~~l~s~~~-------------d~~i~iwd~~~~~~ 211 (451)
-|.+................+..+ ..| .-..|+|.+++ .+.++.+. .|.|.-.+... +.
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgpDG--~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~i 185 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGPDK--MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EP 185 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECTTS--CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCCCC--CEEEEECCCCCCccccCCCCCCCEEEEEeCCC-Cc
Confidence 565533110000000011111111 223 34568899887 56666432 34555555432 21
Q ss_pred --------eeeee-cccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCC-CC--------CCCceeeeeeccCCcce
Q 012996 212 --------LRNIV-FPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS-TS--------SYGMHIIGSLSDHSKAV 272 (451)
Q Consensus 212 --------~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~--------~~~~~~~~~~~~~~~~v 272 (451)
...+. .......++|+|++.++++-. .++.=.+.-+..+..- .. .....++..+..+....
T Consensus 186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp CTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred cCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 01111 123467899999876655532 2332222222222110 00 00012233333233466
Q ss_pred eEEEEecCCEEEEEcCCCcEEEEeCCCCce----EEEeecCCCCeeEEEEEecCceeeecc
Q 012996 273 TCLAYSTGDLLISGSEDGMVRVWDPITHNI----VRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 273 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
..|+|..+..++..-..+.|....+..... ...+....+.+.+|+..|||.++++.+
T Consensus 266 ~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 788887776777666667777666654432 223334456899999999998766643
No 328
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.32 E-value=0.024 Score=58.72 Aligned_cols=262 Identities=10% Similarity=0.075 Sum_probs=142.6
Q ss_pred ccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEe
Q 012996 61 GSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 61 g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
..|.|-|+.++....+..- .--+.-.+|..+.+|.-. ...+.|+|+.+...+..+.- ..+|.--.|-.+. .|+-.
T Consensus 48 ~~vvIidl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lV 122 (1630)
T 1xi4_A 48 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALV 122 (1630)
T ss_pred ceEEEEECCCCCCcccccc--cchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEE
Confidence 5788888887665433221 122344678888887754 67899999998887777653 3466666776543 34444
Q ss_pred eCCCcEEEeeCcchhhhhhhhcccccceecccCC----cCceeEEEEeecCCeeEEEEee-------CCCcEEEEEcCCC
Q 012996 141 SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH----TLRITDIVIGYGGVSATIVSAS-------EDRTCKVWSLLKG 209 (451)
Q Consensus 141 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~ 209 (451)
+. ..|.-|++.. ...+...+..| ...|..-..+++. ++++..+ -.|.+.+|....+
T Consensus 123 T~-~aVyHW~~~~----------~s~P~k~fdR~~~L~~~QIinY~~d~~~--kW~~l~gi~~~~~~v~G~mQLyS~er~ 189 (1630)
T 1xi4_A 123 TD-NAVYHWSMEG----------ESQPVKMFDRHSSLAGCQIINYRTDAKQ--KWLLLTGISAQQNRVVGAMQLYSVDRK 189 (1630)
T ss_pred cC-CeEEEeccCC----------CCccHHHHhcchhcccCeeEEeeeCCCC--CeEEEEeeccCCCcccceeeeeecccc
Confidence 33 4799999953 12233333333 3445555555555 6666433 3478888987654
Q ss_pred ceeeeeecccceeEEEEC--CC-CCEEEEEe---CCCcEEEEEccCCCCCCCCCCceeeeeec---cCCcceeEEEEec-
Q 012996 210 RLLRNIVFPSVIDAIALD--PA-EHVFYAGS---RDGSIYIAALNAESPSTSSYGMHIIGSLS---DHSKAVTCLAYST- 279 (451)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~--~~-~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~- 279 (451)
.....-.|-.....+... +. ...++.+. ..+.+++.++.........+..+.+..+. .-..-..++..++
T Consensus 190 ~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k 269 (1630)
T 1xi4_A 190 VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEK 269 (1630)
T ss_pred cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccc
Confidence 321111121111111111 11 11222221 13689999986541111111111111111 1233456788888
Q ss_pred CCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 280 GDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 280 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
...+..-+.-|.|.+||+.++.++..-+-...+|...+-+....-++.....|.|.--.+.
T Consensus 270 ~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 270 HDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred cCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 7788888999999999999999887655545555544444332223333344443333333
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.24 E-value=0.041 Score=48.20 Aligned_cols=225 Identities=8% Similarity=0.078 Sum_probs=106.6
Q ss_pred eEEEeecCCCCCCeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCC---Cc-------cEEEEECCCC
Q 012996 2 ELLIASSSVADTGIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSAS---SG-------SILYWSWSKP 71 (451)
Q Consensus 2 e~~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---~g-------~i~vw~~~~~ 71 (451)
|.+++.|+ . .+.+||..+.+-.. .......+..-.++ ...++..++.||.. ++ .+.+||..+.
T Consensus 16 ~~i~~~GG-~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~ 88 (318)
T 2woz_A 16 DLILLVND-T--AAVAYDPMENECYL-TALAEQIPRNHSSI---VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88 (318)
T ss_dssp EEEEEECS-S--EEEEEETTTTEEEE-EEECTTSCSSEEEE---ECSSSCEEEEESSCC-------CCCBEEEEEETTTT
T ss_pred chhhhccc-c--ceEEECCCCCceec-ccCCccCCccceEE---EEECCEEEEECCcccCccccCCCccccEEEEeCCCC
Confidence 34556666 3 48999998887544 22111112222222 23456666666621 01 2777887776
Q ss_pred ceeeeec-CC-CCeeEEEECCCCcEEEEeccC-------CCEEEEEcCCCccee--eeccccCCeeEEEEccCCcEEEEe
Q 012996 72 QVEVKSL-PA-EPIKPIAANSHGTYIAGGGQS-------GDIYMWEVASGRLLK--KWHAHYRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 72 ~~~~~~~-~~-~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~s~ 140 (451)
....... +. ..-.+++. -++.+++.|+.+ ..+.+||..+.+-.. .+......-..+. .++++++.|
T Consensus 89 ~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~G 165 (318)
T 2woz_A 89 EWVGLPPLPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLG 165 (318)
T ss_dssp EEEECSCBSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEEC
T ss_pred cEEECCCCCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEc
Confidence 6443221 11 11112222 256777777754 247888887654322 1211111111222 357777777
Q ss_pred eCC------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCC-----CcEEEEEcCCC
Q 012996 141 SED------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASED-----RTCKVWSLLKG 209 (451)
Q Consensus 141 ~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~ 209 (451)
+.+ ..+.+||+.+. ....+......... .+++. .++ .+++.|+.+ ..+.+||+.+.
T Consensus 166 G~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPKKG---------DWKDLAPMKTPRSM-FGVAI-HKG--KIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CEESSSCBCCCEEEEETTTT---------EEEEECCCSSCCBS-CEEEE-ETT--EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCCCCCccceEEEEcCCCC---------EEEECCCCCCCccc-ceEEE-ECC--EEEEEcCcCCCCccceEEEEECCCC
Confidence 642 35888888652 12222111111111 12222 243 677776643 35778998876
Q ss_pred ceeeeeec--ccceeEEEECCCCCEEEEEeCC--------------CcEEEEEccCC
Q 012996 210 RLLRNIVF--PSVIDAIALDPAEHVFYAGSRD--------------GSIYIAALNAE 250 (451)
Q Consensus 210 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~ 250 (451)
+-...-.. +..-.+++. -++.+++.|+.+ ..+.+||+.+.
T Consensus 233 ~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 233 KWEVMTEFPQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CEEECCCCSSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred eEEECCCCCCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 53322211 111112222 245666666643 34666776654
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.23 E-value=0.06 Score=47.62 Aligned_cols=196 Identities=13% Similarity=0.060 Sum_probs=109.8
Q ss_pred CeeEEEEccCCcEEEEe------------eCCCcEEEeeCcchhhhhhhhcccccceec----ccCCcCceeEEEEeec-
Q 012996 124 AVTCLVFSEDGSFLISG------------SEDGCVRIWSLLTVFEECESQRASHLYLHS----FTGHTLRITDIVIGYG- 186 (451)
Q Consensus 124 ~v~~~~~~~~~~~l~s~------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~- 186 (451)
...++...|+|..++++ ..+|.|.++|+.+... ....+.. +.........+.+..+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-------~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-------AVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-------CEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-------ceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 34566777776555444 2689999999863111 0011111 1123345667777663
Q ss_pred -CCeeEEEEeeC--CCcEEEEEcCCCc-e---eeeeec--ccceeEEEECCCCCEEEEEe-----------------CCC
Q 012996 187 -GVSATIVSASE--DRTCKVWSLLKGR-L---LRNIVF--PSVIDAIALDPAEHVFYAGS-----------------RDG 240 (451)
Q Consensus 187 -~~~~~l~s~~~--d~~i~iwd~~~~~-~---~~~~~~--~~~i~~~~~~~~~~~l~~~~-----------------~dg 240 (451)
+...++++-.. +.++.+|++.... . +..+.+ -...+.+.+.++|.+.++.. ..|
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g 203 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 203 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCcc
Confidence 32234444333 4677887765432 2 222221 24578899999998776653 124
Q ss_pred cEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEE-cCCCcEEEEeCCC-Cce--EEEeecCCCCeeE
Q 012996 241 SIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISG-SEDGMVRVWDPIT-HNI--VRMFRLAKGPVNN 315 (451)
Q Consensus 241 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~v~~ 315 (451)
.|+.+|.. . +..+...-...+.++|+| ++.|+.+ +..+.|..|++.. +.. .+.+. ..+..-.
T Consensus 204 ~vyr~d~~--~----------~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDG 270 (355)
T 3sre_A 204 FVTYYSPN--D----------VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDN 270 (355)
T ss_dssp EEEEECTT--C----------CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEE
T ss_pred EEEEEECC--e----------EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCce
Confidence 45555442 1 112222335678999999 7666655 4578899999863 332 22342 2456788
Q ss_pred EEEEe-cCceeeeccCC-CCcccccc
Q 012996 316 ILVVR-RPLYLNLGSFS-NPHTSSRR 339 (451)
Q Consensus 316 l~~s~-~~~~l~~~s~d-~~i~iw~~ 339 (451)
+++.+ +|++.+++..+ +.+..|+.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECC
Confidence 99999 58877766544 34444443
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.22 E-value=0.094 Score=45.82 Aligned_cols=216 Identities=9% Similarity=0.114 Sum_probs=104.7
Q ss_pred cEEEEECCCCceeeeecC--CCCeeEEEECCCCcEEEEecc----CC-------CEEEEEcCCCccee--eeccccCCee
Q 012996 62 SILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQ----SG-------DIYMWEVASGRLLK--KWHAHYRAVT 126 (451)
Q Consensus 62 ~i~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~--~~~~~~~~v~ 126 (451)
.+..||..+.+....... ...........++.+++.|+. ++ .+.+||..+.+-.. .+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 478899887775442211 122223334456777888773 12 17788877654322 2221111112
Q ss_pred EEEEccCCcEEEEeeCC-------CcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--
Q 012996 127 CLVFSEDGSFLISGSED-------GCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE-- 197 (451)
Q Consensus 127 ~~~~~~~~~~l~s~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~-- 197 (451)
.+.+ ++..++.|+.+ ..+.+||+.+. ....+..+...... .+++. .++ .+++.|+.
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---------~W~~~~~~p~~r~~-~~~~~-~~~--~iyv~GG~~~ 169 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA---------KWSEVKNLPIKVYG-HNVIS-HNG--MIYCLGGKTD 169 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT---------EEEEECCCSSCEES-CEEEE-ETT--EEEEECCEES
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC---------CEeECCCCCCcccc-cEEEE-ECC--EEEEEcCCCC
Confidence 2222 56777777754 24777787542 11111111111001 11222 344 66666654
Q ss_pred ----CCcEEEEEcCCCceeeeee--cccceeEEEECCCCCEEEEEeCC-----CcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 198 ----DRTCKVWSLLKGRLLRNIV--FPSVIDAIALDPAEHVFYAGSRD-----GSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 198 ----d~~i~iwd~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
-..+.+||+.+.+-...-. .+..-.+++. -++.+++.|+.+ ..+.+||+.+.. +..+..+.
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p 241 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK-------WEVMTEFP 241 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC-------EEECCCCS
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe-------EEECCCCC
Confidence 2358999998765333212 2211122222 256677777643 357788887653 23332222
Q ss_pred cCCcceeEEEEecCCEEEEEcCC--------------CcEEEEeCCCCc
Q 012996 267 DHSKAVTCLAYSTGDLLISGSED--------------GMVRVWDPITHN 301 (451)
Q Consensus 267 ~~~~~v~~~~~~~~~~l~s~~~d--------------g~i~iwd~~~~~ 301 (451)
...... ++....+.+++.|+.+ ..+.+||+.+.+
T Consensus 242 ~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 242 QERSSI-SLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp SCCBSC-EEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred Ccccce-EEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 221111 2222236677777654 347778877654
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.21 E-value=0.21 Score=49.70 Aligned_cols=294 Identities=11% Similarity=0.072 Sum_probs=151.2
Q ss_pred CeEEEECccCceeeeee--cCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeeecC------CCCeeE
Q 012996 14 GIGCWDLESGAEQLRYK--SCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKSLP------AEPIKP 85 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~------~~~v~~ 85 (451)
.|..+|..+++.. .+. ...-+...|.++. ...+|.+.+ +.. +.|..++..+......... ...|.+
T Consensus 122 Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~--~d~~g~lWi-gt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 195 (758)
T 3ott_A 122 GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSII--RTKDNQIYV-GTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNS 195 (758)
T ss_dssp EEEEEETTTCCEE-EECHHHHCCSCSCEEEEE--ECTTCCEEE-EET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEE
T ss_pred cceeEeCCCCeEE-EeccCCCCcCCCeEEEEE--EcCCCCEEE-EeC--CCHhhCccCCCceEEecCCCccccccceeEE
Confidence 5667776655432 221 0111234455554 444555544 333 3477788766654322211 224888
Q ss_pred EEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 86 IAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 86 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
+...+++..|..|+. +-+..+|..+++...........|.++...++|.+.+ |+.+ -+.+++..+.. .
T Consensus 196 i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~---------~ 263 (758)
T 3ott_A 196 LLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTP---------L 263 (758)
T ss_dssp EEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSC---------C
T ss_pred EEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCc---------E
Confidence 888777765555554 4588889776643322111234588888877776544 4544 57788864311 0
Q ss_pred cceec-----ccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCE
Q 012996 166 LYLHS-----FTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHV 232 (451)
Q Consensus 166 ~~~~~-----~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~ 232 (451)
..... ..-....|.++.....+ .|..|+..| +.++... . ....+. ....|.++.-+.+|.+
T Consensus 264 ~~~~~~~~~~~~l~~~~i~~i~~D~~g---~lWiGT~~G-l~~~~~~-~-~~~~~~~~~~~~~~~~~~v~~i~~D~~g~l 337 (758)
T 3ott_A 264 QHIIHDSRNIQSLTNNIIWNIFADQEH---NIWLGTDYG-ISLSRYN-S-ALQFIPISQITGTGDGNQFYSLFRDSKGFY 337 (758)
T ss_dssp EEECCCTTCTTSCSCSCEEEEEECTTC---CEEEEESSS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCE
T ss_pred EEEEcCCCCcCcCCcCeEEEEEEcCCC---CEEEEeCCc-ccccccC-C-ceeEEecccCCCCCCCceEEEEEEcCCCCE
Confidence 00000 01123457777765554 455566666 5544332 1 111111 1245888888877765
Q ss_pred EEEEeCCCcEEEEEccCCCCCCCCCCceeeee----eccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEee-
Q 012996 233 FYAGSRDGSIYIAALNAESPSTSSYGMHIIGS----LSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFR- 307 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~- 307 (451)
. +|+.+| +..++..+..... ...... ..-....|.++.-.+...|..|+ ++-|..||..+++...-..
T Consensus 338 W-iGt~~G-l~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~ 410 (758)
T 3ott_A 338 W-FGGANG-LIRFTDPAGERHD----AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIV 410 (758)
T ss_dssp E-EEETTE-EEEESCTTSSCCC----CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEE
T ss_pred E-EeeCCc-ceeecccccccce----eEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecC
Confidence 4 455555 5566554321000 000000 00112468888877733344455 4568899988765433211
Q ss_pred c-----CCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 308 L-----AKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 308 ~-----~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
. ....|.++...++|.+ ..|+..+-+..++.
T Consensus 411 ~~~~~~~~~~v~~i~~d~~g~l-WigT~~~Gl~~~~~ 446 (758)
T 3ott_A 411 DNTGTYNTNWTYYIFEDTAGQL-WISTCLGGIFVVDK 446 (758)
T ss_dssp CCC--CBSSSEEEEEECTTSEE-EEEESSSCEEEEEH
T ss_pred CCcCCCCCceEEEEEEcCCCCE-EEEECCCceEEEcc
Confidence 1 1235788887777754 44555555555553
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.19 E-value=0.041 Score=49.08 Aligned_cols=126 Identities=7% Similarity=0.046 Sum_probs=58.5
Q ss_pred CcEEEEEcCCCceeeeeecc--cce-eEEEECCCCCEEEEEeC------CCcEEEEEccCCCCCCCCCCceeeeeeccCC
Q 012996 199 RTCKVWSLLKGRLLRNIVFP--SVI-DAIALDPAEHVFYAGSR------DGSIYIAALNAESPSTSSYGMHIIGSLSDHS 269 (451)
Q Consensus 199 ~~i~iwd~~~~~~~~~~~~~--~~i-~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
..+.+||+.+.+-...-..+ ... .+++.. ++.+++.|+. ...+..||++.... .+..+..+....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-----~W~~~~~~~~~~ 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-----KWNKLAPVSSPD 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-----EEEECCCSSTTT
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-----cEEecCCCCCCc
Confidence 47889998876543322222 111 233322 5566666653 34577787632211 122222221111
Q ss_pred ccee-EEEEecCCEEEEEcCC----------------------CcEEEEeCCCCc--eEEEeecCCCCeeEEEEEecCce
Q 012996 270 KAVT-CLAYSTGDLLISGSED----------------------GMVRVWDPITHN--IVRMFRLAKGPVNNILVVRRPLY 324 (451)
Q Consensus 270 ~~v~-~~~~~~~~~l~s~~~d----------------------g~i~iwd~~~~~--~~~~~~~~~~~v~~l~~s~~~~~ 324 (451)
.... ++....+.+++.|+.+ ..+.+||+.+.+ .+..+.. ......+...+++.
T Consensus 242 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i 319 (357)
T 2uvk_A 242 GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSL 319 (357)
T ss_dssp CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSS--CCBSSEEEEETTEE
T ss_pred ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCC--CcccceeEEeCCEE
Confidence 1111 1233336677777632 247789987654 3333322 22223334457788
Q ss_pred eeeccCCC
Q 012996 325 LNLGSFSN 332 (451)
Q Consensus 325 l~~~s~d~ 332 (451)
++.|+.++
T Consensus 320 ~v~GG~~~ 327 (357)
T 2uvk_A 320 LIIGGETA 327 (357)
T ss_dssp EEEEEECG
T ss_pred EEEeeeCC
Confidence 88887654
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.021 Score=50.06 Aligned_cols=197 Identities=11% Similarity=0.061 Sum_probs=105.0
Q ss_pred CcEEEEeccCCCEEEEEcCCCcceeeeccc-cCCeeEEEEc--c-CCcEEEEe-eCCCcEEEeeCcchhhhhhhhccccc
Q 012996 92 GTYIAGGGQSGDIYMWEVASGRLLKKWHAH-YRAVTCLVFS--E-DGSFLISG-SEDGCVRIWSLLTVFEECESQRASHL 166 (451)
Q Consensus 92 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~ 166 (451)
+..+++++.||.|+-+|..+|+.+..+... ..++....-. + ++..++.. +.||.|..++..++........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~---- 85 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSI---- 85 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEH----
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecc----
Confidence 346888899999999999999998887654 1232221100 1 23333343 5789999988765422110000
Q ss_pred ceecccCCcCceeE---EEE-----eecCCeeEEEEeeCCCcEEEEEcCCCceeeeeeccccee--------EEEEC---
Q 012996 167 YLHSFTGHTLRITD---IVI-----GYGGVSATIVSASEDRTCKVWSLLKGRLLRNIVFPSVID--------AIALD--- 227 (451)
Q Consensus 167 ~~~~~~~~~~~i~~---i~~-----~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~--------~~~~~--- 227 (451)
..+. ...++.. ..+ ...+ ..+++|+.+|.+...|+.+|+.+..+....+.. |....
T Consensus 86 --~~lv-~~SP~~~~~~pvv~~~~~~~~~--g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~ 160 (339)
T 2be1_A 86 --RQLV-STSPLHLKTNIVVNDSGKIVED--EKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK 160 (339)
T ss_dssp --HHHH-TTCSEEEECC----------CC--EEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred --ccce-eccccccCCCceeecccccccC--CEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence 0000 1111211 000 0022 689999999999999999999999887432211 11110
Q ss_pred --CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCc--cee-EEEEec-CCEEEEEcCCCcEEEEeCCCCc
Q 012996 228 --PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSK--AVT-CLAYST-GDLLISGSEDGMVRVWDPITHN 301 (451)
Q Consensus 228 --~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~-~~~l~s~~~dg~i~iwd~~~~~ 301 (451)
..+..++.|..+..+.+.+ +++. ... .. ......+.. ++. +-..+. +.+ +.++.||.|.-+|..+|.
T Consensus 161 ~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~---~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 161 LQECENMIVIGKTIFELGIHS-YDGA-SYN---VT-YSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRI 233 (339)
T ss_dssp ----CCEEEEEEEEEECEECC-TTSC-CCC---CE-EEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCC
T ss_pred cccCCCeEEEecceEEEEEEC-CCCC-eEE---Ee-cccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCc
Confidence 1245677777777666666 2221 110 00 111111100 000 000011 334 557889999999988888
Q ss_pred eEE
Q 012996 302 IVR 304 (451)
Q Consensus 302 ~~~ 304 (451)
.+.
T Consensus 234 ~~W 236 (339)
T 2be1_A 234 ARW 236 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.95 E-value=0.19 Score=44.69 Aligned_cols=231 Identities=12% Similarity=0.053 Sum_probs=116.3
Q ss_pred ceEEecceEeeccCcccCCCCCCccEEEEECCCCceeeee-----cCCCCeeEEEECCC---CcEEEEecc----C----
Q 012996 38 GLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVKS-----LPAEPIKPIAANSH---GTYIAGGGQ----S---- 101 (451)
Q Consensus 38 ~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~~-----~~~~~v~~~~~~~~---~~~l~~~~~----d---- 101 (451)
.-..++ |.|+|+++++ ... |.|.+++.. +...... ........|+++|+ +..|.++.. +
T Consensus 30 ~P~~ia--~~pdG~l~V~-e~~-g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSIA--PLGGGRYLVT-ERP-GRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEEE--EEETTEEEEE-ETT-TEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEEE--EcCCCeEEEE-eCC-CEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 345566 9999985554 444 899998743 3311211 12356889999997 444444332 2
Q ss_pred CCEEEEEcCCC--c-----ce-eeecc-ccCCeeEEEEccCCcEEEEeeCC-------------CcEEEeeCcchhhhhh
Q 012996 102 GDIYMWEVASG--R-----LL-KKWHA-HYRAVTCLVFSEDGSFLISGSED-------------GCVRIWSLLTVFEECE 159 (451)
Q Consensus 102 g~i~iwd~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~s~~~d-------------g~i~vwd~~~~~~~~~ 159 (451)
+.|..|+.... . .+ ..+.. .......+.|.|||.++++.+.. |.|.-++.........
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 56777876544 1 11 11221 11134679999999877765432 3454444421000000
Q ss_pred hhcccccceecccCCcCceeEEEEee-cCCeeEEEEeeCCC---cEEEEEcCCCc------------------eeeee-e
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGY-GGVSATIVSASEDR---TCKVWSLLKGR------------------LLRNI-V 216 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~-~~~~~~l~s~~~d~---~i~iwd~~~~~------------------~~~~~-~ 216 (451)
. .....+. ..++. ....++|++ .+ .++++-.... .|.+.. .+. ++..+ .
T Consensus 185 p--f~~~~i~-a~G~r-np~Gla~d~~~g--~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 185 P--FPNSPIW-SYGHR-NPQGIDWHRASG--VMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp S--STTCCEE-EECCS-CCCEEEECTTTC--CEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred C--CCCCcEE-EEccC-CcceEEEeCCCC--CEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 0 0000111 12222 345788888 44 4444322221 233322 211 11222 1
Q ss_pred cccceeEEEEC-------CCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeee-eccCCcceeEEEEec-CCEEEEEc
Q 012996 217 FPSVIDAIALD-------PAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGS-LSDHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 217 ~~~~i~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
.......++|. .++.++++....+.|...++...... ..... +.+....+..+++.| |.++++..
T Consensus 257 ~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 257 ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------RKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE------EEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc------cceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 23456777874 46666766666778888888653110 10112 222245688888888 76665553
No 336
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.76 E-value=0.52 Score=46.84 Aligned_cols=289 Identities=12% Similarity=0.152 Sum_probs=151.9
Q ss_pred CeEEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCCceeee-----ecCCCCeeEEEE
Q 012996 14 GIGCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKPQVEVK-----SLPAEPIKPIAA 88 (451)
Q Consensus 14 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~~~-----~~~~~~v~~~~~ 88 (451)
.+..||..+.+... ........|.++. . .+|. +..++. +.+..++..+...... ......|.++..
T Consensus 83 Gl~~yd~~~~~f~~---~~~~~~~~i~~i~--~-~~g~-lWigt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 153 (758)
T 3ott_A 83 GILVYNYRADRYEQ---PETDFPTDVRTMA--L-QGDT-LWLGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIR 153 (758)
T ss_dssp EEEEEETTTTEECC---CSCCCCSCEEEEE--E-ETTE-EEEEET--TEEEEEETTTCCEEEECHHHHCCSCSCEEEEEE
T ss_pred CeEEEeCCCCEEEC---cccCCCceEEEEE--e-cCCc-EEEEcC--CcceeEeCCCCeEEEeccCCCCcCCCeEEEEEE
Confidence 47788877654322 1111223455543 2 3444 444444 3577888876654432 123457888888
Q ss_pred CCCCcEEEEeccCCCEEEEEcCCCcceee-ecc----ccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 89 NSHGTYIAGGGQSGDIYMWEVASGRLLKK-WHA----HYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 89 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
.++|.+.+ |+.+ -|..++..+++.... ... ....|.++...+++..|..|+. +-+..+|..+..
T Consensus 154 d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~-------- 222 (758)
T 3ott_A 154 TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQ-------- 222 (758)
T ss_dssp CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTE--------
T ss_pred cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCe--------
Confidence 88887665 3444 477888766543221 111 1234788888777665555654 457788874311
Q ss_pred cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--------cccceeEEEECCCCCEEEE
Q 012996 164 SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--------FPSVIDAIALDPAEHVFYA 235 (451)
Q Consensus 164 ~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~ 235 (451)
......+ ....|.++....++ .|..|+.+ -+.+++..+++...... ....|.++..+.++. |.+
T Consensus 223 -~~~~~~l--~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi 294 (758)
T 3ott_A 223 -IKQTEAF--HNNSIKSLALDGNG---DLLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWL 294 (758)
T ss_dssp -EEEEEEE--EEEEEEEEEECTTC---CEEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEE
T ss_pred -EEeccCC--CCCeEEEEEEcCCC---CEEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEE
Confidence 0011111 12356676655544 44555544 58888877654322111 123588888887775 555
Q ss_pred EeCCCcEEEEEccCCCCCCCCCCceeeee--e--ccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCc--eEEEee--
Q 012996 236 GSRDGSIYIAALNAESPSTSSYGMHIIGS--L--SDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHN--IVRMFR-- 307 (451)
Q Consensus 236 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-- 307 (451)
|+..| +.++..... ...... . ......|.++.-.....|..|+.+| +..++..++. ....+.
T Consensus 295 GT~~G-l~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~ 364 (758)
T 3ott_A 295 GTDYG-ISLSRYNSA--------LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-LIRFTDPAGERHDAIWYRMG 364 (758)
T ss_dssp EESSS-EEEECCCC---------CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-EEEESCTTSSCCCCEEECTT
T ss_pred EeCCc-ccccccCCc--------eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-ceeecccccccceeEEeccC
Confidence 66666 544432111 011100 0 0123468888777733444455555 6666655432 122222
Q ss_pred -----cCCCCeeEEEEEecCceeeeccCCCCccccccCCC
Q 012996 308 -----LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRHGS 342 (451)
Q Consensus 308 -----~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~~~ 342 (451)
.....|.++.-.++|..-+ |+ ++-+..++..+.
T Consensus 365 ~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~ 402 (758)
T 3ott_A 365 DKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATR 402 (758)
T ss_dssp CSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTT
T ss_pred CcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCC
Confidence 1123588888777776444 33 345666765543
No 337
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.75 E-value=0.16 Score=49.79 Aligned_cols=217 Identities=9% Similarity=0.023 Sum_probs=105.0
Q ss_pred CCeEEEECccCceeeee-e---cCCCCCCceEEecceEee-ccCcccCCCCCC-----ccEEEEECCCCceeeeec-C-C
Q 012996 13 TGIGCWDLESGAEQLRY-K---SCASPPHGLACVGQRFLA-SSQLREQPSASS-----GSILYWSWSKPQVEVKSL-P-A 80 (451)
Q Consensus 13 g~i~vwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~-----g~i~vw~~~~~~~~~~~~-~-~ 80 (451)
..+.+||..+++....- . +....+..-.++. ..+ +++.++.||.+. ..+.+||..+........ + .
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~ 489 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCC
Confidence 45888998876543321 1 0011111112222 332 677777776542 358888988765443321 1 1
Q ss_pred CCeeEEEECCCCcEEEEeccCC--CEEEEEcCCCcceee-----eccccCCeeEEEEccC-CcEEEEeeC--C-----Cc
Q 012996 81 EPIKPIAANSHGTYIAGGGQSG--DIYMWEVASGRLLKK-----WHAHYRAVTCLVFSED-GSFLISGSE--D-----GC 145 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~~~~-~~~l~s~~~--d-----g~ 145 (451)
..-.+++...++.+++.|+.++ .+.+||..+..-... +........++.+..+ ++.++.||. + ..
T Consensus 490 R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 1122333334788888887755 699999877642221 1112222233555554 677777776 2 35
Q ss_pred EEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeC--------CCcEEEEEcCCCceeeeeec
Q 012996 146 VRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASE--------DRTCKVWSLLKGRLLRNIVF 217 (451)
Q Consensus 146 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~--------d~~i~iwd~~~~~~~~~~~~ 217 (451)
+.+||+.+..- . .......+.........-.+++...++ .+++.|+. ...+.+||+.+.+-. ....
T Consensus 570 v~~yd~~~~~w-~--~~~~W~~~~~~p~~~R~~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~-~~~~ 643 (695)
T 2zwa_A 570 AIIFKYDAENA-T--EPITVIKKLQHPLFQRYGSQIKYITPR--KLLIVGGTSPSGLFDRTNSIISLDPLSETLT-SIPI 643 (695)
T ss_dssp EEEEEECTTCS-S--CCEEEEEEEECGGGCCBSCEEEEEETT--EEEEECCBCSSCCCCTTTSEEEEETTTTEEE-ECCC
T ss_pred EEEEEccCCcc-c--cceEEEEcCCCCCCCcccceEEEeCCC--EEEEECCccCCCCCCCCCeEEEEECCCCeEE-Eeec
Confidence 88888865220 0 000011111100001011122233324 67777774 346899999887654 2222
Q ss_pred ccce----------eEEEECCCCCEEEEEe
Q 012996 218 PSVI----------DAIALDPAEHVFYAGS 237 (451)
Q Consensus 218 ~~~i----------~~~~~~~~~~~l~~~~ 237 (451)
+... .+.+..+++++++.|+
T Consensus 644 p~~~~~~~~p~~~gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 644 SRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp CHHHHHHSCCCCSSCEEECC---CEEEECC
T ss_pred cccccCCCCccceeeeEEEeCCCEEEEEeC
Confidence 2211 3344445556766665
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.73 E-value=0.25 Score=48.52 Aligned_cols=200 Identities=13% Similarity=0.142 Sum_probs=101.8
Q ss_pred CCCcEEEEeccC----CCEEEEEcCCCcceeee--------ccccCCeeEEEEcc-CCcEEEEeeCCC------cEEEee
Q 012996 90 SHGTYIAGGGQS----GDIYMWEVASGRLLKKW--------HAHYRAVTCLVFSE-DGSFLISGSEDG------CVRIWS 150 (451)
Q Consensus 90 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~~~-~~~~l~s~~~dg------~i~vwd 150 (451)
.++.+++.|+.+ ..+.+||..+++-...- ...... .+++..+ +++.++.||.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 456777777753 45889998776433221 111112 2333333 677888887643 467788
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC--cEEEEEcCCCceeeeee-----cc-ccee
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR--TCKVWSLLKGRLLRNIV-----FP-SVID 222 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~-----~~-~~i~ 222 (451)
..+. ....+......... .+++...++ .+++.|+.++ .+.+||+.+..-...-. .+ ....
T Consensus 475 ~~t~---------~W~~~~~~p~~R~~-h~~~~~~~~--~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~ 542 (695)
T 2zwa_A 475 MKTR---------EWSMIKSLSHTRFR-HSACSLPDG--NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSA 542 (695)
T ss_dssp TTTT---------EEEECCCCSBCCBS-CEEEECTTS--CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSC
T ss_pred CCCC---------cEEECCCCCCCccc-ceEEEEcCC--EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCccccee
Confidence 7541 12222111111111 112221244 6777777655 68999998765433221 11 1223
Q ss_pred EEEECCC-CCEEEEEeC--C-----CcEEEEEccCCCCCCCCCCceeeeeec-cCCcceeEEEEecCCEEEEEcCC----
Q 012996 223 AIALDPA-EHVFYAGSR--D-----GSIYIAALNAESPSTSSYGMHIIGSLS-DHSKAVTCLAYSTGDLLISGSED---- 289 (451)
Q Consensus 223 ~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~s~~~d---- 289 (451)
++.+..+ +.+++.|+. + ..+..||+.+..- .....+..+.... ........+.+..+.+++.||.+
T Consensus 543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w-~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~ 621 (695)
T 2zwa_A 543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENA-TEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL 621 (695)
T ss_dssp EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCS-SCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCcc-ccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC
Confidence 3555555 667777765 2 3588999887641 0111122222211 11112222333226777777743
Q ss_pred ----CcEEEEeCCCCceE
Q 012996 290 ----GMVRVWDPITHNIV 303 (451)
Q Consensus 290 ----g~i~iwd~~~~~~~ 303 (451)
..|.+||+.+.+-.
T Consensus 622 ~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 622 FDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CCTTTSEEEEETTTTEEE
T ss_pred CCCCCeEEEEECCCCeEE
Confidence 45899998876543
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.65 E-value=0.032 Score=45.03 Aligned_cols=145 Identities=11% Similarity=-0.004 Sum_probs=80.9
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce------eeec--cccCCeeEEEEccCCcEEEEeeCCCcEEEeeCc
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL------KKWH--AHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLL 152 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~ 152 (451)
..+..++|+|+|.+.++ .+|.++-.+..+.... ..+- +-. ...++.|.|+|.+.++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 47789999999997777 6777666665442211 1110 111 1478999999987777 56988877753
Q ss_pred chhhhhhhhcccccceec--c--cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCcee------eeee--cccc
Q 012996 153 TVFEECESQRASHLYLHS--F--TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLL------RNIV--FPSV 220 (451)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------~~~~--~~~~ 220 (451)
+.. ....+.. . ..-=..+..+.+.|++ . |.... |+.++-....++... ..+. .-..
T Consensus 116 ~~~--------~~~Wl~~a~~vg~~gw~~~~~lff~p~G--~-Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 116 QSD--------TDNWIARATEVGSGGWSGFKFLFFHPNG--Y-LYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp CST--------TCCHHHHSEEEECSSGGGEEEEEECTTS--C-EEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred cCC--------CCceeccccEeccCCCCceEEEEECCCc--e-EEEEe-CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 210 1111110 0 1111356788888887 4 44444 777654433322211 1111 1123
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEE
Q 012996 221 IDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 221 i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
..-+.|.|++.+.++. +|.++-
T Consensus 184 yr~l~f~~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 184 FKFLFFSSVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp EEEEEECTTSCEEEEE--TTEEEE
T ss_pred EEEEEECCCCcEEEEe--CCeEEe
Confidence 3446788998887776 674443
No 340
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.32 E-value=0.53 Score=41.75 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=54.3
Q ss_pred eEEecceEeeccCcccCCCCCCccEEEEECCCCcee-ee------ecCCCCeeEEEECCC---CcEEEEe-cc-------
Q 012996 39 LACVGQRFLASSQLREQPSASSGSILYWSWSKPQVE-VK------SLPAEPIKPIAANSH---GTYIAGG-GQ------- 100 (451)
Q Consensus 39 v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~~~~-~~------~~~~~~v~~~~~~~~---~~~l~~~-~~------- 100 (451)
-..++ |.|+|+.+.++... |.|++++.+..... .. .........|+++|+ +..|.+. ..
T Consensus 20 P~~i~--~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 20 PWALA--FLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp EEEEE--ECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred cEEEE--EcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34555 99999834444455 89999985432111 11 112346789999995 4444333 22
Q ss_pred CCCEEEEEcCCCc----cee----eecc---ccCCeeEEEEccCCcEEEEeeC
Q 012996 101 SGDIYMWEVASGR----LLK----KWHA---HYRAVTCLVFSEDGSFLISGSE 142 (451)
Q Consensus 101 dg~i~iwd~~~~~----~~~----~~~~---~~~~v~~~~~~~~~~~l~s~~~ 142 (451)
...|..|++..+. ... .+.. .......+.|.|||.+.++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 2356666664321 111 1111 1112357999999976666443
No 341
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=96.20 E-value=0.51 Score=40.32 Aligned_cols=223 Identities=15% Similarity=0.043 Sum_probs=117.7
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
...|..|+...... ++. . ||.|+.|-....-.+..-......|..++...+.. ++. . ||.|..|-.......
T Consensus 23 ~~~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gql-- 94 (282)
T 3qhy_B 23 QSGVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQT-- 94 (282)
T ss_dssp SSSCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTT--
T ss_pred cCCCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCC--
Confidence 34688888765433 333 4 89999998655433322222334677777764332 333 4 899999976431110
Q ss_pred hhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-CceeeeeecccceeEEEECCCCCEEEEEeC
Q 012996 160 SQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFPSVIDAIALDPAEHVFYAGSR 238 (451)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 238 (451)
..+.. -...|..++.... ..+.-. +|.|+.|-... ++.-........|..++.......+ -.
T Consensus 95 -----g~P~~----~~~~v~~ia~G~~----hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~--l~- 157 (282)
T 3qhy_B 95 -----TVPAE----ARSGVDAIAAGAW----ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA--VK- 157 (282)
T ss_dssp -----CCCGG----GSSSEEEEEEETT----EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE--EE-
T ss_pred -----CCCcc----cCCCeEEEECcCC----EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE--EE-
Confidence 00000 1235666665443 333344 99999997654 2322222234456666654433322 23
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeecCCCCeeEEEE
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRLAKGPVNNILV 318 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~ 318 (451)
||.++.|-......... .......|..++......++. .||.|..|-....-.+..-......|..++.
T Consensus 158 ~G~v~~wG~n~~gqlg~---------p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~ 226 (282)
T 3qhy_B 158 NGGVIAWGDNYFGQTTV---------PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIAS 226 (282)
T ss_dssp TTEEEEEECCTTSTTSC---------CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEE
T ss_pred CCEEEEecCCCCCCCCC---------ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEc
Confidence 79999998765432211 001134567766554333444 6999999976543222111111235666665
Q ss_pred EecCceeeeccCCCCccccccCC
Q 012996 319 VRRPLYLNLGSFSNPHTSSRRHG 341 (451)
Q Consensus 319 s~~~~~l~~~s~d~~i~iw~~~~ 341 (451)
.......++ ||.+..|-...
T Consensus 227 G~~h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 227 GEWYSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp CSSCEEEEE---TTEEEEESTTC
T ss_pred CCCEEEEEE---CCEEEEecCCC
Confidence 443333232 78888887554
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.10 E-value=0.3 Score=45.09 Aligned_cols=109 Identities=8% Similarity=0.009 Sum_probs=61.0
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--eee-------cccceeEEEECCC---CCEEEEEeC----
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NIV-------FPSVIDAIALDPA---EHVFYAGSR---- 238 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~-------~~~~i~~~~~~~~---~~~l~~~~~---- 238 (451)
-....+|+|.+++ +++++-...+.|++++..++.... .+. .......++|+|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG--~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCceEEEEcCCC--cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 3355789999987 665554444578888865554322 121 1345668999996 666666543
Q ss_pred ---------CCcEEEEEccCCCCCCCCCCceeee-eec-cCCcceeEEEEec-CCEEEEEc
Q 012996 239 ---------DGSIYIAALNAESPSTSSYGMHIIG-SLS-DHSKAVTCLAYST-GDLLISGS 287 (451)
Q Consensus 239 ---------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~~~~~-~~~l~s~~ 287 (451)
...|.-|+........ ...+.+. .+. ........|+|.| |.+.++.+
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~--~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTL--EKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEE--EEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCCccccccccEEEEEEECCCCCCc--CCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666654321100 0011111 121 1224578999999 77766654
No 343
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.04 E-value=0.46 Score=38.44 Aligned_cols=110 Identities=11% Similarity=-0.013 Sum_probs=61.8
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~ 202 (451)
..+.+++|+|++.+.++ .+|.+.-.+..+.... .-......+-. .+-.. -..+.|.+++ .+.++ .||.|+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~--~W~~s~t~IG~-~Gw~~-F~a~~fD~~G--~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND--NWMGRAKKIGN-GGWNQ-FQFLFFDPNG--YLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC--CHHHHCEEEEC-SCGGG-CSEEEECTTS--CEEEE--ETTEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcc--cccccccEecc-ccccc-ceEEEECCCC--CEEEe--CCCEEE
Confidence 46789999999986665 6777666665321000 00000000100 01111 3577788776 45555 569998
Q ss_pred EEEcCCCceeeee-----ecc---cceeEEEECCCCCEEEEEeCCCcEEE
Q 012996 203 VWSLLKGRLLRNI-----VFP---SVIDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 203 iwd~~~~~~~~~~-----~~~---~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
-++..+.....-+ ... ..+..+.+.|+|.+.++. |+.++-
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 8876442221111 111 467999999999988877 777543
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.76 E-value=1.3 Score=41.35 Aligned_cols=112 Identities=9% Similarity=0.069 Sum_probs=69.0
Q ss_pred CCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhh--cccccceecccCCcCceeEEEEeecCCeeEEEEeeCCC
Q 012996 123 RAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQ--RASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDR 199 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~ 199 (451)
.....+.++|||++++.++. +.++.++|++......... ........... -.......+|.++| +...|.-.|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G--~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG--NAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS--EEEEEETTTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC--ceEeeeeecc
Confidence 34467889999999876654 7899999997643322111 01111122222 23344566777766 6667777899
Q ss_pred cEEEEEcCCC----------ceeeeeecccceeEEEE------CCCCCEEEEEe
Q 012996 200 TCKVWSLLKG----------RLLRNIVFPSVIDAIAL------DPAEHVFYAGS 237 (451)
Q Consensus 200 ~i~iwd~~~~----------~~~~~~~~~~~i~~~~~------~~~~~~l~~~~ 237 (451)
.|.-|++... ..+..+.-...+-.+.- .|+|++|++..
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999998653 34444543344444433 57899998875
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.41 E-value=1.7 Score=40.51 Aligned_cols=301 Identities=11% Similarity=0.061 Sum_probs=162.8
Q ss_pred EEeecCCCCCCeEEEECccCceeeeeecCCC---------------------------CCCceEEecceEeeccCcccCC
Q 012996 4 LIASSSVADTGIGCWDLESGAEQLRYKSCAS---------------------------PPHGLACVGQRFLASSQLREQP 56 (451)
Q Consensus 4 ~l~s~~~~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~v~~~~~~~~~~~~~l~~~ 56 (451)
.+.||+ ..|.|+|+-+.+++.+..+.-+.. |.-.+.... =..||++|..-
T Consensus 72 ~f~SgG-~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~td--g~yDGrylfiN 148 (638)
T 3sbq_A 72 GFWSGG-HQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTD--GKYDGKYLFIN 148 (638)
T ss_dssp EEEECG-GGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEET--TEEEEEEEEEE
T ss_pred EEeecC-cCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccC--CeeeeEEEEEe
Confidence 467788 999999999999999887754321 111122112 12467777766
Q ss_pred CCCCccEEEEECCCCcee--eeecCCCCeeEEEEC--CCCcEEEEeccC-------CCEEEEEcCCCcceeeec---cc-
Q 012996 57 SASSGSILYWSWSKPQVE--VKSLPAEPIKPIAAN--SHGTYIAGGGQS-------GDIYMWEVASGRLLKKWH---AH- 121 (451)
Q Consensus 57 ~~d~g~i~vw~~~~~~~~--~~~~~~~~v~~~~~~--~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~---~~- 121 (451)
...+..|..-+++..+.. ........+..++|- |+..|+++++.. |.. ..+...+....+. +.
T Consensus 149 dkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~t 226 (638)
T 3sbq_A 149 DKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV--FDLQDENSYTMYNAIDAET 226 (638)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC--CCTTSTTEEEEEEEEETTT
T ss_pred cCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc--cccCChhhceEEEEEcCCc
Confidence 655567777777765543 334456788999986 788888887653 221 1001111111111 10
Q ss_pred ---------cCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEee-------
Q 012996 122 ---------YRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGY------- 185 (451)
Q Consensus 122 ---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~------- 185 (451)
.+........+++.+.++.+.+..--+ .+.... ....=..+.|..
T Consensus 227 m~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~------------------~l~em~-~~e~D~~~vfn~~~ie~~v 287 (638)
T 3sbq_A 227 MEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAF------------------DLGGMM-RNERDWVVVFDIHAVEAAV 287 (638)
T ss_dssp CSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCS------------------SHHHHT-CSSCEEEEEEEHHHHHHHH
T ss_pred cEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCc------------------ChhhcC-cccccEEEEecHHHHHHHH
Confidence 111112223334444444333211000 000000 011112222221
Q ss_pred -cCCeeEEEEeeCCC-cEEEEEcCC----C-ceeeeeecccceeEEEECCCCCEEEEEe-CCCcEEEEEccCCCCC----
Q 012996 186 -GGVSATIVSASEDR-TCKVWSLLK----G-RLLRNIVFPSVIDAIALDPAEHVFYAGS-RDGSIYIAALNAESPS---- 253 (451)
Q Consensus 186 -~~~~~~l~s~~~d~-~i~iwd~~~----~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~---- 253 (451)
.|. +-. ..| .|.+.|.+. + .....+..+.....+.++|+|+++++++ -+.++.++|+......
T Consensus 288 k~G~--~~~---~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k 362 (638)
T 3sbq_A 288 KAGD--FIT---LGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGK 362 (638)
T ss_dssp HTTC--CBC---CTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTC
T ss_pred hcCC--eEE---ECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhcc
Confidence 221 111 121 478888876 3 3445556778888999999999988876 4678999998752100
Q ss_pred CCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC----------ceEEEeecCCCCeeEEEE----
Q 012996 254 TSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH----------NIVRMFRLAKGPVNNILV---- 318 (451)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~l~~---- 318 (451)
............. -.-.....+|.+ |....+..-|..|.-|++... ..+..+..|-.+ -.+.-
T Consensus 363 ~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~ge 440 (638)
T 3sbq_A 363 LADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCE 440 (638)
T ss_dssp CSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTT
T ss_pred ccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCc
Confidence 0000001122222 234567788998 866667778999999998653 456667665443 33333
Q ss_pred --EecCceeeeccCCCCcc
Q 012996 319 --VRRPLYLNLGSFSNPHT 335 (451)
Q Consensus 319 --s~~~~~l~~~s~d~~i~ 335 (451)
.|||++|++...-..=|
T Consensus 441 t~~~dGk~lv~lnK~skdr 459 (638)
T 3sbq_A 441 TNEADGKWLVALSKFSKDR 459 (638)
T ss_dssp STTCCSCEEEEEESCCTTS
T ss_pred cCCCCccEEEEeccccccc
Confidence 58999999875433333
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.36 E-value=1.3 Score=38.89 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=83.0
Q ss_pred cCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceee--ee-----ecccceeEEEECCC---CCEEEEE---eCCCc
Q 012996 175 TLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLR--NI-----VFPSVIDAIALDPA---EHVFYAG---SRDGS 241 (451)
Q Consensus 175 ~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~-----~~~~~i~~~~~~~~---~~~l~~~---~~dg~ 241 (451)
-.....|+|.+++ .++++--..|.|++++...+.... .+ ........++++|+ +..|++. ..++.
T Consensus 31 L~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 31 LNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 3456789999987 666655558999999876554321 11 12456789999995 5556554 24456
Q ss_pred EEEEEccCCCCC-CCCCCceee-eeec-cCCcceeEEEEec-CCEEEEEcC-------------CCcEEEEeCCCCc---
Q 012996 242 IYIAALNAESPS-TSSYGMHII-GSLS-DHSKAVTCLAYST-GDLLISGSE-------------DGMVRVWDPITHN--- 301 (451)
Q Consensus 242 i~i~d~~~~~~~-~~~~~~~~~-~~~~-~~~~~v~~~~~~~-~~~l~s~~~-------------dg~i~iwd~~~~~--- 301 (451)
|.-|.+...... ......+.+ ..+. ........|.|.| +.+.++.+. -|.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 666666542210 000011211 1121 2223456799999 777666542 3555555543210
Q ss_pred ----eEEEee-cCCCCeeEEEEEecCceeee
Q 012996 302 ----IVRMFR-LAKGPVNNILVVRRPLYLNL 327 (451)
Q Consensus 302 ----~~~~~~-~~~~~v~~l~~s~~~~~l~~ 327 (451)
....+. +| .....++|+|+|.+.++
T Consensus 189 nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~ 218 (347)
T 3das_A 189 NPFPGSPVYSYGH-RNVQGLAWDDKQRLFAS 218 (347)
T ss_dssp CSSTTCCEEEBCC-SBCCEEEECTTCCEEEE
T ss_pred CCCCCCeEEeeCC-CCcceEEECCCCCEEEE
Confidence 011122 33 24578999998766554
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.97 E-value=1.6 Score=37.63 Aligned_cols=238 Identities=8% Similarity=0.042 Sum_probs=120.6
Q ss_pred EeeccCcccCCC-CCCccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEeccC--------------CCEEEEEcC
Q 012996 46 FLASSQLREQPS-ASSGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGGQS--------------GDIYMWEVA 110 (451)
Q Consensus 46 ~~~~~~~l~~~~-~d~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~ 110 (451)
|+.++..+.... .+++.|...+.+......... .. +--++++|.+|.-.... ..|+..++.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~--~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN--DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE--EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC--Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 455565555543 223666666665544332221 22 33457888888766543 357777766
Q ss_pred CCcceeeeccccCCeeEEEEccCCcEEEEee--CCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCC
Q 012996 111 SGRLLKKWHAHYRAVTCLVFSEDGSFLISGS--EDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGV 188 (451)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 188 (451)
.++... +.. . .+..|+++++.|+-.. .++.-.||.+.. ... ....+..+.. ..+++.+.
T Consensus 97 g~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~---------dGs-~~~~lt~~~~----~~~~~~g~ 157 (302)
T 3s25_A 97 GHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLYRIRI---------DGE-EKKKIKNHYL----FTCNTSDR 157 (302)
T ss_dssp SCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEEEEET---------TSC-CCEEEESSCC----CCSEEETT
T ss_pred CCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEEEEEC---------CCC-CeEEEeCCCc----eEeeEECC
Confidence 554322 221 1 1236777888888665 344444444321 111 1122222322 34567763
Q ss_pred eeEEEEeeCCCcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeCC--CcEEEEEccCCCCCCCCCCceeeeeec
Q 012996 189 SATIVSASEDRTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSRD--GSIYIAALNAESPSTSSYGMHIIGSLS 266 (451)
Q Consensus 189 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~ 266 (451)
.+.++......|...++..+.....+. .... ..++|++.+|+-.... ..|..-++.... ...+.
T Consensus 158 -~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~----------~~~Lt 223 (302)
T 3s25_A 158 -YFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN----------PVVLT 223 (302)
T ss_dssp -EEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC----------CEECS
T ss_pred -EEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC----------eEEEe
Confidence 344454446788888887655433322 2222 2355888888766544 356666666543 11222
Q ss_pred cCCcceeEEEEec-CCEEEEEc--CCCcEEEEeCCCCceEEEeecCCCCeeEEEEEecCceeeecc
Q 012996 267 DHSKAVTCLAYST-GDLLISGS--EDGMVRVWDPITHNIVRMFRLAKGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 267 ~~~~~v~~~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s 329 (451)
. ..+ ..|+| +..|.-++ ..+.|..-++.-.. .+.+... .+. .+++.+.+|+-..
T Consensus 224 ~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~-r~~l~~~--~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 224 E--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG-FKELAKG--EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp C--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC-CEEEEES--CEE--EEEECSSEEEEEE
T ss_pred C--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc-cEEeeCC--ccc--eEEEeCCEEEEEE
Confidence 1 223 23677 77776553 34566666665333 2333221 233 4555666665543
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.62 E-value=2.7 Score=38.65 Aligned_cols=60 Identities=10% Similarity=0.099 Sum_probs=38.9
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce--eeecc------ccCCeeEEEEccC---CcEEEEe
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL--KKWHA------HYRAVTCLVFSED---GSFLISG 140 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~s~ 140 (451)
.....|+|.|+|+++++-...+.|++++..++... ..+.. ..+....|+|+|+ +..|+.+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 46689999999998777544456888876555432 22221 2456779999995 4444443
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=94.52 E-value=2.6 Score=37.91 Aligned_cols=134 Identities=7% Similarity=-0.032 Sum_probs=66.0
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee--cc----cceeEEEECC-CCCEEEEEeC-----------
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV--FP----SVIDAIALDP-AEHVFYAGSR----------- 238 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~----~~i~~~~~~~-~~~~l~~~~~----------- 238 (451)
.+.++.+.+... ..++.++..+ |...+- .++.-..+. .+ ..+.+++++| +...+++++.
T Consensus 233 ~~~~i~~~~~~~-~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~ 309 (394)
T 3b7f_A 233 DPHCVVQHPAAP-DILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSP 309 (394)
T ss_dssp CEEEEEECSSST-TEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBC
T ss_pred ceeEEEECCCCC-CEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecC
Confidence 477888877532 3555565544 444432 233322222 12 2356788887 4455555542
Q ss_pred CCcEEEEEccCCCCCCCCCCceeeee-eccCC----cceeEEEEec--CCEEEEEcCCCcEEEEeCCCCceEEEeecCCC
Q 012996 239 DGSIYIAALNAESPSTSSYGMHIIGS-LSDHS----KAVTCLAYST--GDLLISGSEDGMVRVWDPITHNIVRMFRLAKG 311 (451)
Q Consensus 239 dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~----~~v~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 311 (451)
++...+|........ +..+.. +.... .....++++| ...|+.++.++.|..-+ ..++--..+..+..
T Consensus 310 ~~~~~~~~S~DgG~t-----W~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~S~-D~G~tW~~~~~~lp 383 (394)
T 3b7f_A 310 GGKPAVYVTRDAGES-----WQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWASA-DEGEHWQCIASHLP 383 (394)
T ss_dssp CSSCCEEEESSTTSC-----CEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEEES-STTSBCEEEECSCS
T ss_pred CCceeEEEECCCCCC-----ceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEEEEC-CCCCCceEcccCCC
Confidence 233455554443211 122111 11100 0123578877 35577776666655433 44555555555555
Q ss_pred CeeEEEEE
Q 012996 312 PVNNILVV 319 (451)
Q Consensus 312 ~v~~l~~s 319 (451)
.+.++.|.
T Consensus 384 ~~~~v~~~ 391 (394)
T 3b7f_A 384 HIYAVQSA 391 (394)
T ss_dssp CEEEEEEE
T ss_pred CeeEEEEe
Confidence 67777765
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.23 E-value=2.3 Score=36.20 Aligned_cols=221 Identities=15% Similarity=0.112 Sum_probs=117.0
Q ss_pred ccEEEEECCCC-ceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeeccccCCeeEEEEccCCcEEEE
Q 012996 61 GSILYWSWSKP-QVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWHAHYRAVTCLVFSEDGSFLIS 139 (451)
Q Consensus 61 g~i~vw~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 139 (451)
|.|..|-.+.. +.-........|..++...+.. ++. . ||.|+.|-....-.+..-..-...|..++...+ +.+.
T Consensus 42 G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~a 116 (282)
T 3qhy_B 42 GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYA 116 (282)
T ss_dssp TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEE
T ss_pred CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEE
Confidence 99999986532 2222222235788888765433 333 4 899999986543332222222346777777644 3344
Q ss_pred eeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-Cceeeeeecc
Q 012996 140 GSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-GRLLRNIVFP 218 (451)
Q Consensus 140 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~ 218 (451)
-. ||.|..|-....... . ........|..++.... ..++ -. ||.|+.|-... ++.-......
T Consensus 117 l~-~G~v~~wG~n~~gql---------g--~~~~~~~~i~~i~~G~~---~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~ 179 (282)
T 3qhy_B 117 LK-DGKVIAWGDDSDGQT---------T--VPAEAQSGVTALDGGVY---TALA-VK-NGGVIAWGDNYFGQTTVPAEAQ 179 (282)
T ss_dssp EE-TTEEEEEECCTTSTT---------S--CCGGGGSSEEEEEECSS---EEEE-EE-TTEEEEEECCTTSTTSCCGGGG
T ss_pred Ee-CCeEEEecCCCCCcC---------C--CCccCCCCeEEEEcccC---EEEE-EE-CCEEEEecCCCCCCCCCceecC
Confidence 44 899999976431110 0 00112234666654332 2333 33 79999997654 2221111234
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCC
Q 012996 219 SVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 219 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~ 298 (451)
..|..++...... ++. .+|.++.|-......... +. .....|..++-.....++.. ||.|..|-..
T Consensus 180 ~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-----p~----~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 180 SGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-----PT----EALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp SSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-----CG----GGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred CCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-----Cc----ccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 5567776654433 333 599999998765432211 00 11235667765543344443 9999999866
Q ss_pred CCceEEEeecCCCCeeEEEEEec
Q 012996 299 THNIVRMFRLAKGPVNNILVVRR 321 (451)
Q Consensus 299 ~~~~~~~~~~~~~~v~~l~~s~~ 321 (451)
...++.. ...|..++....
T Consensus 246 ~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 246 RTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp CCCCGGG----SSCEEEEEECSS
T ss_pred CCccccC----CCCcEEEEECcC
Confidence 5433321 224555554443
No 351
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=93.64 E-value=3.2 Score=35.87 Aligned_cols=205 Identities=9% Similarity=0.028 Sum_probs=112.1
Q ss_pred CCCCcEEEEeccCCCEEEEEcCCCccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhh
Q 012996 89 NSHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECE 159 (451)
Q Consensus 89 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 159 (451)
-++..++++.+.+|.|+--.+..-+... .++. .+.+..+........++..+..|.++-+..........
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 3566778888999999988765432211 1222 23444554444556778888889877776643211100
Q ss_pred hhcccccc---eecccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCC-------CceeeeeecccceeEEEECC
Q 012996 160 SQRASHLY---LHSFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLK-------GRLLRNIVFPSVIDAIALDP 228 (451)
Q Consensus 160 ~~~~~~~~---~~~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~~ 228 (451)
. ....+ ...+. ....|.++....+ .....++..+..|.++...+.. |.....+.....+..+....
T Consensus 84 ~--~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~ 160 (312)
T 1suu_A 84 A--SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF 160 (312)
T ss_dssp ------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEEC
T ss_pred c--CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeC
Confidence 0 11111 11122 2234555433321 1126788889999999887643 22222233344555555545
Q ss_pred CCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCC
Q 012996 229 AEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPI 298 (451)
Q Consensus 229 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~ 298 (451)
.+..++..+.+|....+....-..............+.. ...|.++..-+ +..+++.+..|..+..++.
T Consensus 161 ~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 161 KDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 566788889999999998866322211111122223332 34555555544 6778888999998888764
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=93.51 E-value=4.6 Score=37.20 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=34.2
Q ss_pred CCeeEEEECCCCc-EEEEeccCCCEEEEEcCCC---cceeeec---------cccCCeeEEEEccC
Q 012996 81 EPIKPIAANSHGT-YIAGGGQSGDIYMWEVASG---RLLKKWH---------AHYRAVTCLVFSED 133 (451)
Q Consensus 81 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~ 133 (451)
.....|+|.|+|. .|+++...|.|++++.... ..+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4568999999996 3444577899999974322 1122111 11456789999996
No 353
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.94 E-value=4.9 Score=36.00 Aligned_cols=153 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCCeeEEEECC--CCcEEEEeccCC----CEEEEEcCCCcceeeec------c--------ccCCeeEEEEcc-C-CcE
Q 012996 79 PAEPIKPIAANS--HGTYIAGGGQSG----DIYMWEVASGRLLKKWH------A--------HYRAVTCLVFSE-D-GSF 136 (451)
Q Consensus 79 ~~~~v~~~~~~~--~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~------~--------~~~~v~~~~~~~-~-~~~ 136 (451)
....|.+|++.| .+.+.+ ++..| .|...+ ..++.-..+. . +...|.++++.| + ...
T Consensus 53 ~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 130 (394)
T 3b7f_A 53 LGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGT 130 (394)
T ss_dssp TTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTC
T ss_pred CCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCE
Confidence 456799999998 455444 44444 343332 2232211111 0 112477888886 2 455
Q ss_pred EEEeeCCCcEEEeeCcchhhhhhhhcccccceecc----------------cCCcCceeEEEEeecCCeeEEEEeeCCCc
Q 012996 137 LISGSEDGCVRIWSLLTVFEECESQRASHLYLHSF----------------TGHTLRITDIVIGYGGVSATIVSASEDRT 200 (451)
Q Consensus 137 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~~i~~~~~~~~~~l~s~~~d~~ 200 (451)
+..++..+.|...+-.. .....+... ......+.+|.+.+... ..++.+..++.
T Consensus 131 l~~g~~~ggl~~S~DgG---------~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~-~~l~vg~~~gg 200 (394)
T 3b7f_A 131 WYAGTSPQGLFRSTDHG---------ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDP-KHLYIGMSSGG 200 (394)
T ss_dssp EEEEEETTEEEEESSTT---------SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCT-TCEEEEEETBE
T ss_pred EEEEecCCcEEEEcCCC---------CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCC-CEEEEEECCCC
Confidence 66666555554442110 001111100 01234577888876432 33444444444
Q ss_pred EEEEEcCCCceeeeeec--------------ccceeEEEECCC-CCEEEEEeCCCcEEEE
Q 012996 201 CKVWSLLKGRLLRNIVF--------------PSVIDAIALDPA-EHVFYAGSRDGSIYIA 245 (451)
Q Consensus 201 i~iwd~~~~~~~~~~~~--------------~~~i~~~~~~~~-~~~l~~~~~dg~i~i~ 245 (451)
|...+ ..++.-..+.. ...+.++.++|. ...+++++..+ |+..
T Consensus 201 l~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 201 VFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEE
T ss_pred EEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEe
Confidence 44332 12222222110 134789999985 46777776555 4443
No 354
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=92.61 E-value=4.8 Score=35.02 Aligned_cols=209 Identities=9% Similarity=0.029 Sum_probs=111.7
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEc---CC------Ccceee---eccccCCeeEEEEcc---CCcEEEEeeCCCcE
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEV---AS------GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDGCV 146 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i 146 (451)
.+..+........|+.-+..|.++-... .. |..+.. +. ....|..+...+ +..+++.++.+|.+
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 3444444344445555566666554443 22 222111 22 234555554333 57799999999999
Q ss_pred EEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcC--CC---------ceeeee
Q 012996 147 RIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLL--KG---------RLLRNI 215 (451)
Q Consensus 147 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~--~~---------~~~~~~ 215 (451)
+--.+....... ........+.. ...+..+...... ..++..+..|.+..+... .- ...-.+
T Consensus 122 Kr~~l~~~~~~~----r~G~~~i~lke-~D~lv~~~~~~~~--d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L 194 (327)
T 3uc1_A 122 KKSKLTDFDSNR----SGGIVAVNLRD-NDELVGAVLCSAG--DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRF 194 (327)
T ss_dssp EEEEGGGGCCCC----SSCEESCBCCT-TCCEEEEEEECTT--CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCC
T ss_pred EEeEHHHhhccc----cCceEEEEECC-CCEEEEEEEecCC--CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecC
Confidence 998875532110 01111222333 3445555444444 567788888988887765 21 111222
Q ss_pred ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
.....|.++...+.+..++..+..|.++...+..-..............+..-...+..+.... ...++..+.+|.+.-
T Consensus 195 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir 274 (327)
T 3uc1_A 195 NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIR 274 (327)
T ss_dssp CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEE
Confidence 3445677777666777899999999999888765432111101111112222123344444444 566667777887777
Q ss_pred EeCC
Q 012996 295 WDPI 298 (451)
Q Consensus 295 wd~~ 298 (451)
++..
T Consensus 275 ~~~~ 278 (327)
T 3uc1_A 275 TAAR 278 (327)
T ss_dssp EEGG
T ss_pred Eehh
Confidence 7654
No 355
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.31 E-value=5 Score=34.49 Aligned_cols=175 Identities=10% Similarity=0.084 Sum_probs=94.3
Q ss_pred EeeccCcccCCCCC-------------CccEEEEECCCCceeeeecCCCCeeEEEECCCCcEEEEec--cC--CCEEEEE
Q 012996 46 FLASSQLREQPSAS-------------SGSILYWSWSKPQVEVKSLPAEPIKPIAANSHGTYIAGGG--QS--GDIYMWE 108 (451)
Q Consensus 46 ~~~~~~~l~~~~~d-------------~g~i~vw~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d--g~i~iwd 108 (451)
++++|.+|.-+... ...|+..+++..+...... .. +..|++++++|+-.. .+ ..|+..+
T Consensus 60 i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 60 INADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred EEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 66777777766443 2567777877665433322 22 336778888887665 23 3455556
Q ss_pred cCCCcceeeeccccCCeeEEEEccCCcEEEEeeC-CCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecC
Q 012996 109 VASGRLLKKWHAHYRAVTCLVFSEDGSFLISGSE-DGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGG 187 (451)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 187 (451)
+. +.....+..+.. ..|+++++.|+-.+. ...|.+.++... ....+ +.+ ... ..+.|.+
T Consensus 136 ~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---------~~~~l--~~~---~~~-~~~~P~g 195 (302)
T 3s25_A 136 ID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---------SEALF--YDC---NCY-KPVVLDD 195 (302)
T ss_dssp TT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT---------EEEEE--ECS---CEE-EEEEEET
T ss_pred CC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC---------CEEEE--eCC---Ccc-ceeeecC
Confidence 54 333444443332 345677777775544 567777777431 11111 121 111 2355776
Q ss_pred CeeEEEEeeCC--CcEEEEEcCCCceeeeeecccceeEEEECCCCCEEEEEeC--CCcEEEEEccCC
Q 012996 188 VSATIVSASED--RTCKVWSLLKGRLLRNIVFPSVIDAIALDPAEHVFYAGSR--DGSIYIAALNAE 250 (451)
Q Consensus 188 ~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~ 250 (451)
.+|+-.... ..|..-++.... ...+. ...+ ..|+|++..|+-+.. .+.|...++...
T Consensus 196 --~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 196 --TNVYYMDVNRDNAIVHVNINNPN-PVVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp --TEEEEEEGGGTTEEEEECSSSCC-CEECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred --CEEEEEEcCCCcEEEEEECCCCC-eEEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 455544433 356666665443 22222 2223 347788888876532 356777777654
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=92.02 E-value=5.5 Score=34.39 Aligned_cols=194 Identities=8% Similarity=0.036 Sum_probs=109.0
Q ss_pred eccCcccCCCCCCccEEEEECCCCce---------eeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCCC------
Q 012996 48 ASSQLREQPSASSGSILYWSWSKPQV---------EVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVASG------ 112 (451)
Q Consensus 48 ~~~~~l~~~~~d~g~i~vw~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 112 (451)
++..++++.+.+ |.|+--....-.. .......+.+..+........++..+..|.++-+....-
T Consensus 6 ~~e~~~v~~T~~-G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKK-GFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETT-CBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCC-CEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 445555555666 7777665432211 111123455555555555566767788888777765321
Q ss_pred ---cc---eeeeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEE
Q 012996 113 ---RL---LKKWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVI 183 (451)
Q Consensus 113 ---~~---~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 183 (451)
.. ...+. ....|..+...+ ++.+|+..+.+|.++...+....... ........+.. ...+..+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r----~~G~~~i~L~~-~d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK----SRGVIVIKLND-KDFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT-TCCEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC----CCcEEEEecCC-CCEEEEEEE
Confidence 11 11122 223455543332 46678888999999999886532211 12222233443 455666655
Q ss_pred eecCCeeEEEEeeCCCcEEEEEcCCC-------ceeee--eecccceeEEEECCCCCEEEEEeCCCcEEEEEccCC
Q 012996 184 GYGGVSATIVSASEDRTCKVWSLLKG-------RLLRN--IVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 184 ~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.... ..++..+.+|.+..+....- +-+.- +.....+.++..-+++..+++.+..|.....++..-
T Consensus 159 ~~~~--~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 159 VFKD--EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp ECTT--CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred eCCC--CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 5433 57888889999888876431 11222 223455666665556667888899999999888653
No 357
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=91.84 E-value=6.5 Score=34.85 Aligned_cols=159 Identities=11% Similarity=0.000 Sum_probs=89.5
Q ss_pred ECCCCcEEEEeccCCCEEEEEcCCC---------cceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhh
Q 012996 88 ANSHGTYIAGGGQSGDIYMWEVASG---------RLLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEEC 158 (451)
Q Consensus 88 ~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 158 (451)
+-|+..++++.+.+|.|+--.+... ..-..++ ....+..+........|+..+..|.+.-+.........
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 3467788999999999998655321 1112233 34556555555555667777788887666553321110
Q ss_pred hhhccccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEEC
Q 012996 159 ESQRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALD 227 (451)
Q Consensus 159 ~~~~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~ 227 (451)
. .....++. .+. ....|.++....+ ..+.+++.++..|.++...+... .....+.....+..+...
T Consensus 82 r--~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~ 158 (370)
T 3l6v_A 82 S--NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALT 158 (370)
T ss_dssp T--TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEE
T ss_pred c--ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEe
Confidence 0 01111111 122 2345555543321 12268999999999998875432 111222233444444444
Q ss_pred CCCCEEEEEeCCCcEEEEEccCC
Q 012996 228 PAEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 228 ~~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.....++..+.+|.+..++...-
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v 181 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTV 181 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGS
T ss_pred CCCceEEEEeCCCeEEEEEcccc
Confidence 55567888889999888887653
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=90.74 E-value=7.8 Score=33.70 Aligned_cols=243 Identities=13% Similarity=0.019 Sum_probs=126.8
Q ss_pred cEEEEeccCCCEEEEEcCCCcc-------e--eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcc
Q 012996 93 TYIAGGGQSGDIYMWEVASGRL-------L--KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRA 163 (451)
Q Consensus 93 ~~l~~~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 163 (451)
..+++.+.+|.|+--.+.+.+. + ..++ ..+.+..+........|+.-+..|.+.-........... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~k-e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~ 80 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLK-QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TA 80 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCC-GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cC
Confidence 4566778888888665432111 1 1122 234455554444555666667777765554432211100 01
Q ss_pred ccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCCc-------eeeeeecccceeEEEECCCCCE
Q 012996 164 SHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKGR-------LLRNIVFPSVIDAIALDPAEHV 232 (451)
Q Consensus 164 ~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~-------~~~~~~~~~~i~~~~~~~~~~~ 232 (451)
...++. .+. ....|.++....+ .....++..+.+|.++.-.+.... ....+.....+..+........
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ 159 (327)
T 3uc1_A 81 RGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDD 159 (327)
T ss_dssp CCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCE
T ss_pred CCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCE
Confidence 111211 122 2345555543332 123799999999999988765422 1122223444555555555677
Q ss_pred EEEEeCCCcEEEEEcc--CCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------ce
Q 012996 233 FYAGSRDGSIYIAALN--AESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------NI 302 (451)
Q Consensus 233 l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~~ 302 (451)
++..+..|.+..+... .-..............+.. ...|.++...+ +.+++..+..|.++.-.+... +-
T Consensus 160 ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G 238 (327)
T 3uc1_A 160 LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKG 238 (327)
T ss_dssp EEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred EEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCc
Confidence 8888999999988887 3221111111111222322 34566666555 778999999999888765322 22
Q ss_pred EEEeec--CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 303 VRMFRL--AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 303 ~~~~~~--~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
+..++. -.+.+-.+....+...++..+.+|.+.-+...
T Consensus 239 ~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 239 VLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 222322 13445555444444556556666665544443
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=90.44 E-value=9.4 Score=34.15 Aligned_cols=212 Identities=17% Similarity=0.124 Sum_probs=104.4
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEEE
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRI 148 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~v 148 (451)
..+..++++....+.+.-..+|.|+.|-....-.+ ..+.. ....|..++.. ..+.+....||.|..
T Consensus 105 ~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 105 VFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp SCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 34556777666666666688999999975432111 11111 11245555554 445666678999999
Q ss_pred eeCcchhhhhhhhccc-ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeeee
Q 012996 149 WSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNIV 216 (451)
Q Consensus 149 wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~~ 216 (451)
|-.............. ..+..........|..++..... ...+.-..+|.|+.|-.... + ....+.
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~--~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 260 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGD--AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKID 260 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSS--CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCC--cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEec
Confidence 9754321110000000 00111111122345555543322 45666678999999964321 1 111111
Q ss_pred c--ccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC---CCceeeeeeccCCcceeEEEEecCCEEEEEcCCCc
Q 012996 217 F--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGM 291 (451)
Q Consensus 217 ~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~ 291 (451)
. ...|..++. .....++-..+|.|+.|-.......... ....+..........|..++.. ....++...||.
T Consensus 261 ~~~~~~v~~v~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G-~~h~~al~~~G~ 337 (389)
T 3kci_A 261 SLTGLGVVKVEC--GSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG-SLHCVCCTEDGE 337 (389)
T ss_dssp GGTTSCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC-SSEEEEEETTCC
T ss_pred ccCCCcEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec-cCeEEEECCCCC
Confidence 1 123444444 2334445578999999976542211100 0001111111112345555543 445555678999
Q ss_pred EEEEeCCC
Q 012996 292 VRVWDPIT 299 (451)
Q Consensus 292 i~iwd~~~ 299 (451)
|..|-...
T Consensus 338 v~~wG~n~ 345 (389)
T 3kci_A 338 VYTWGDND 345 (389)
T ss_dssp EEEEECCT
T ss_pred EEEeeCCC
Confidence 99997653
No 360
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.66 E-value=9.2 Score=32.89 Aligned_cols=210 Identities=10% Similarity=0.057 Sum_probs=111.2
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------Cccee---eeccccCCeeEEEEc---cCCcEEEEeeCCC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLK---KWHAHYRAVTCLVFS---EDGSFLISGSEDG 144 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~---~~~~~~~~v~~~~~~---~~~~~l~s~~~dg 144 (451)
.+.+..+........|+..+..|.++-+.... |..+. .+. ....|..+... +++.+++..+.+|
T Consensus 41 ~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G 119 (307)
T 1zi0_A 41 EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANG 119 (307)
T ss_dssp -CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 34555555444555666667778866665421 22111 122 33456555432 3566789999999
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC---------ceeeee
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG---------RLLRNI 215 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~ 215 (451)
.++-..+....... ........+..+ ..+..+...... ..++..+.+|.+..++...- ...-.+
T Consensus 120 ~~Krt~l~e~~~~~----r~G~~~i~l~~~-d~lv~~~~~~~~--~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L 192 (307)
T 1zi0_A 120 TVKKTVLTEFNRLR----TAGKVAIKLVDG-DELIGVDLTSGE--DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRL 192 (307)
T ss_dssp EEEEEEGGGGTTCC----TTCEESSCCCTT-CCEEEEEEECTT--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC
T ss_pred eEEEEEHHHhhccc----cCCeEEEEECCC-CEEEEEEEeCCC--CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEe
Confidence 99998875422111 111122223334 455555544433 56777888888888776421 111122
Q ss_pred ecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEE
Q 012996 216 VFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVR 293 (451)
Q Consensus 216 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~ 293 (451)
.....|.++...+++..+++.+..|..+-.++..-..... ..+.. ...+..-.+.+..+.... ...++..+.+|.+.
T Consensus 193 ~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~-~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i 271 (307)
T 1zi0_A 193 GEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI-SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV 271 (307)
T ss_dssp CTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE-SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred CCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE-eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence 2345666666555666788889999988887754321111 11111 112222234444444433 45555666677666
Q ss_pred EEeCC
Q 012996 294 VWDPI 298 (451)
Q Consensus 294 iwd~~ 298 (451)
-+++.
T Consensus 272 r~~~~ 276 (307)
T 1zi0_A 272 RTRVS 276 (307)
T ss_dssp EEEGG
T ss_pred EEecc
Confidence 55544
No 361
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=89.62 E-value=9.3 Score=32.87 Aligned_cols=245 Identities=12% Similarity=0.032 Sum_probs=124.4
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCccee---------eeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhh
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGRLLK---------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECES 160 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 160 (451)
|+..++++.+.+|.|+--.+.+.+... .++.+ +.+..+........|+..+..|.+.-+..........
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~- 78 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATR- 78 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCS-
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCC-
Confidence 455677888999999877664422111 12222 3444444444555677777888866665533211110
Q ss_pred hccccccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC-------ceeeeeecccceeEEEECCC
Q 012996 161 QRASHLYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG-------RLLRNIVFPSVIDAIALDPA 229 (451)
Q Consensus 161 ~~~~~~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~i~~~~~~~~ 229 (451)
.....++. .+. ....|.++....+ ..+.+++..+..|.++...+..- .....+.....+..+.....
T Consensus 79 -~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 79 -GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp -SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred -CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 01111111 122 2335555543221 12257889999999998876421 11112222344545444445
Q ss_pred CCEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CCEEEEEcCCCcEEEEeCCCC-------c
Q 012996 230 EHVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GDLLISGSEDGMVRVWDPITH-------N 301 (451)
Q Consensus 230 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-------~ 301 (451)
...++..+.+|.+..++...-..............+. ....|.++...+ +..+++.+..|.++-.++... +
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 5678888899998888876533221111111112232 234566665444 667888899999888876321 1
Q ss_pred eEE--EeecCCCCeeEEEEEecCceeeeccCCCCcccccc
Q 012996 302 IVR--MFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRR 339 (451)
Q Consensus 302 ~~~--~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~ 339 (451)
-+. .+....+.+-.+....+...+...+.+|.+.-...
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~ 275 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRV 275 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEG
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEec
Confidence 122 22222345555544444444555556666543343
No 362
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=89.14 E-value=10 Score=32.81 Aligned_cols=204 Identities=9% Similarity=-0.018 Sum_probs=110.5
Q ss_pred CCCcEEEEeccCCCEEEEEcCCCc----ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccc
Q 012996 90 SHGTYIAGGGQSGDIYMWEVASGR----LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASH 165 (451)
Q Consensus 90 ~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 165 (451)
|+..++++.+.+|.|+--.+...+ .-..++.. +.+..+........|+..+..|.+.-+.......... ....
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r--~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW--KDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT--TSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC--CCCC
Confidence 566778888999999877654221 11123322 3444444444556677778888866665533211110 0111
Q ss_pred ccee---cccCCcCceeEEEEeec-CCeeEEEEeeCCCcEEEEEcCCC------ceee--eeecccceeEEEECCCCCEE
Q 012996 166 LYLH---SFTGHTLRITDIVIGYG-GVSATIVSASEDRTCKVWSLLKG------RLLR--NIVFPSVIDAIALDPAEHVF 233 (451)
Q Consensus 166 ~~~~---~~~~~~~~i~~i~~~~~-~~~~~l~s~~~d~~i~iwd~~~~------~~~~--~~~~~~~i~~~~~~~~~~~l 233 (451)
.++. .+. ....|.++....+ ..+.+++..+..|.++...+..- .-+. .+.....+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 1111 122 2234555433322 11267889999999999876421 1122 22233445554444556678
Q ss_pred EEEeCCCcEEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec-CC-EEEEEcCCCcEEEEeCC
Q 012996 234 YAGSRDGSIYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST-GD-LLISGSEDGMVRVWDPI 298 (451)
Q Consensus 234 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~s~~~dg~i~iwd~~ 298 (451)
+..+.+|.+..++...-..............+.. ...|.++...+ +. .+++.+..|..+..++.
T Consensus 159 ~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~-~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~ 224 (323)
T 1wp5_A 159 FLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKE-GDYIVSGQLITSKDESIVVATQRGAVKKMKLT 224 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEECCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCC-CCEEEEEEEEcCCCcEEEEEECCCceEEEEHH
Confidence 8889999999888865332211111111222322 34566665444 55 78888889888777654
No 363
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=88.68 E-value=12 Score=33.07 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=108.2
Q ss_pred eeccCcccCCCCCCccEEEEECCC---------CceeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEcCC------
Q 012996 47 LASSQLREQPSASSGSILYWSWSK---------PQVEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS------ 111 (451)
Q Consensus 47 ~~~~~~l~~~~~d~g~i~vw~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------ 111 (451)
-|+..++++.+.+ |.|+--.+.. +.........+.+..+........|+..+..|.++-+....
T Consensus 4 I~~e~~~v~lT~~-GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHA-GYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESS-CEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCC-CEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 3555666666666 7777654321 22223344456666666666666676667788877665421
Q ss_pred ---Cccee---eeccccCCeeEEEEcc---CCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEE
Q 012996 112 ---GRLLK---KWHAHYRAVTCLVFSE---DGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIV 182 (451)
Q Consensus 112 ---~~~~~---~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 182 (451)
|..+. .+. ....|.++.... ++.+|+.++..|.++...+....... ........+.. ...+..+.
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~----~~G~~ai~L~~-~d~lv~v~ 156 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL----ARGKIAINLDE-GDALVGVA 156 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC----TTCEESSCCCT-TCCEEEEE
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc----CCceEEEEeCC-CCEEEEEE
Confidence 21111 122 234565554332 45689999999999999885532210 11222223333 34455554
Q ss_pred EeecCCeeEEEEeeCCCcEEEEEcCCCce-------ee--eeecccceeEEEECC-------------------------
Q 012996 183 IGYGGVSATIVSASEDRTCKVWSLLKGRL-------LR--NIVFPSVIDAIALDP------------------------- 228 (451)
Q Consensus 183 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------~~--~~~~~~~i~~~~~~~------------------------- 228 (451)
..... ..++..+..|.+..++...-.. +. .+.....|.++...+
T Consensus 157 ~~~~~--~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~ 234 (370)
T 3l6v_A 157 LTDGD--RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAE 234 (370)
T ss_dssp EECSC--CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------
T ss_pred EeCCC--ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccc
Confidence 44433 5677788888888776532111 11 122334454444333
Q ss_pred ----------CCCEEEEEeCCCcEEEEEccCC
Q 012996 229 ----------AEHVFYAGSRDGSIYIAALNAE 250 (451)
Q Consensus 229 ----------~~~~l~~~~~dg~i~i~d~~~~ 250 (451)
.+..+++.+..|..+...+..-
T Consensus 235 ~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~ 266 (370)
T 3l6v_A 235 PAVIDVADNGDVAYILTATENGYGKRTPLAEY 266 (370)
T ss_dssp ------------CEEEEEETTSEEEEEEGGGS
T ss_pred ccccccccccCCceEEEeeCCCCEEEEEHHHh
Confidence 4467888899998888887653
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=88.15 E-value=21 Score=34.99 Aligned_cols=231 Identities=10% Similarity=0.095 Sum_probs=112.2
Q ss_pred eeEEE-ECCCCcEEEEe-ccC----CCEEEEEcCCCccee-eec-cccC------CeeEEEEccCCcEEEEe--------
Q 012996 83 IKPIA-ANSHGTYIAGG-GQS----GDIYMWEVASGRLLK-KWH-AHYR------AVTCLVFSEDGSFLISG-------- 140 (451)
Q Consensus 83 v~~~~-~~~~~~~l~~~-~~d----g~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~s~-------- 140 (451)
...+. ++|++++++.+ +.. ..++++|+.+++.+. .+. .-.. ....++|..++.++++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34445 78999988765 222 349999999987663 122 0000 11345787444444432
Q ss_pred --eCCCcEEEeeCcchhhhhhhhcccccceecccCCcCce-eEEEEeecCCee---EEEEeeCC---CcEEEEEcCC--C
Q 012996 141 --SEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRI-TDIVIGYGGVSA---TIVSASED---RTCKVWSLLK--G 209 (451)
Q Consensus 141 --~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~---~l~s~~~d---~~i~iwd~~~--~ 209 (451)
+....|+.|.+-+... ....+ +.+....+ .+...+.++... .+++.+.+ ..+.+.|... +
T Consensus 211 ~~~~~~~v~~~~~Gt~~~-------~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 281 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIE-------KAKKL--FEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL 281 (711)
T ss_dssp TTSSBCEEEEEETTSCGG-------GCEEE--EECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC
T ss_pred cCCCCCEEEEEECCCChH-------HCeEE--eccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC
Confidence 1124588887754211 11112 22222222 223334444322 34443322 3456666543 3
Q ss_pred ceeeeeecccceeEEEECCCCCEEEEE----------eCCCcEEEEEccCCCCCC-CCCCceeeeeeccCCcceeEEEEe
Q 012996 210 RLLRNIVFPSVIDAIALDPAEHVFYAG----------SRDGSIYIAALNAESPST-SSYGMHIIGSLSDHSKAVTCLAYS 278 (451)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 278 (451)
+ ...+..+.... +..+..+.+++.. ...+.|...++....... ....++.+. .......+..+.|.
T Consensus 282 ~-~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 358 (711)
T 4hvt_A 282 K-LQKINMPSDAT-LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTT 358 (711)
T ss_dssp E-EEECCSCTTCE-EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEEC
T ss_pred c-ceEeecCCcce-EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEE
Confidence 2 22333222221 2233455444432 246678889987642100 000112111 12234567788888
Q ss_pred cCCEEEEEcCCCc--EEEEeCCCCc-eEEE-eecC-CCCeeEEEEEecCcee
Q 012996 279 TGDLLISGSEDGM--VRVWDPITHN-IVRM-FRLA-KGPVNNILVVRRPLYL 325 (451)
Q Consensus 279 ~~~~l~s~~~dg~--i~iwd~~~~~-~~~~-~~~~-~~~v~~l~~s~~~~~l 325 (451)
.+.++++...++. |.++|+.++. .... +... .+.+....+++++..+
T Consensus 359 ~~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~ 410 (711)
T 4hvt_A 359 KDRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEA 410 (711)
T ss_dssp SSCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCE
T ss_pred CCEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEE
Confidence 7777777777775 6777876664 2333 3322 3456666666766544
No 365
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=87.70 E-value=13 Score=32.20 Aligned_cols=212 Identities=9% Similarity=0.071 Sum_probs=108.2
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCC---------Ccceee---eccccCCeeEEEEcc---CCcEEEEeeCCC
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVAS---------GRLLKK---WHAHYRAVTCLVFSE---DGSFLISGSEDG 144 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~---~~~~~~~v~~~~~~~---~~~~l~s~~~dg 144 (451)
.+.+..+........|+..+..|.++-+.... |.++.. +. ....|..+...+ ++.+++.++.+|
T Consensus 38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G 116 (323)
T 1wp5_A 38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNG 116 (323)
T ss_dssp TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTS
T ss_pred CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCC
Confidence 45555555555556666667788876665421 221111 22 233455543333 256789999999
Q ss_pred cEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-------ceeeee--
Q 012996 145 CVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-------RLLRNI-- 215 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~-- 215 (451)
.++...+........ ........+... ..+..+...... ..++..+.+|.+..+....- +-+.-+
T Consensus 117 ~iKrt~l~e~~~~~r---~~G~~ai~l~e~-d~lv~~~~~~~~--~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L 190 (323)
T 1wp5_A 117 MVKKTELKHYKAQRY---SKPLTGINLKND-DQVVDVHLTDGM--NELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNL 190 (323)
T ss_dssp EEEEEEGGGGCCSCC---SSCEECSCCCTT-CCEEEEEEECSC--SEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCC
T ss_pred eEEEeEHHHhhhccc---cCceEEEEeCCC-CEEEEEEEeCCC--CEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEe
Confidence 999998854321110 111112223322 455555444433 56778888998888876421 112222
Q ss_pred ecccceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEE-EEecCCEEEEEcCCCcE
Q 012996 216 VFPSVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCL-AYSTGDLLISGSEDGMV 292 (451)
Q Consensus 216 ~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~dg~i 292 (451)
.....|.++...+.+. .+++.+..|..+..++..-..... ..+...+..+......+..+ .+.++..++..+.+|.+
T Consensus 191 ~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ 270 (323)
T 1wp5_A 191 KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFI 270 (323)
T ss_dssp CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCE
T ss_pred CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeE
Confidence 2334455554434444 788888899888887765221111 11112222222222234432 33334555556666665
Q ss_pred EEEeCC
Q 012996 293 RVWDPI 298 (451)
Q Consensus 293 ~iwd~~ 298 (451)
.-..+.
T Consensus 271 ir~~~~ 276 (323)
T 1wp5_A 271 ETIKVG 276 (323)
T ss_dssp EEEEGG
T ss_pred EEEEhh
Confidence 555443
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.50 E-value=31 Score=35.20 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=31.5
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.+.+++..+ ..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 456677776 7799999999999999999999988764
No 367
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.15 E-value=11 Score=34.72 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=61.1
Q ss_pred cceeEEEECCCCC-EEEEEeCCCcEEEEEccCCCCCCCCCCceeee-eec-----cCCcceeEEEEecC----CEEEEE-
Q 012996 219 SVIDAIALDPAEH-VFYAGSRDGSIYIAALNAESPSTSSYGMHIIG-SLS-----DHSKAVTCLAYSTG----DLLISG- 286 (451)
Q Consensus 219 ~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~-----~~~~~v~~~~~~~~----~~l~s~- 286 (451)
.....|+|.|++. .|+++...|.|++++.......... .-+. .+. ........|+++|. .+|...
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~---~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPY---LDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCS---EECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeee---cCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3567899999996 5666778899999975432100000 0010 011 12456788999982 333332
Q ss_pred cC--C----------CcEEEEeCCC----------CceEEEee--cCCCCeeEEEEEecCceeeeccCCC
Q 012996 287 SE--D----------GMVRVWDPIT----------HNIVRMFR--LAKGPVNNILVVRRPLYLNLGSFSN 332 (451)
Q Consensus 287 ~~--d----------g~i~iwd~~~----------~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~s~d~ 332 (451)
+. + ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.+..+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 21 1 1344455432 22333332 1123568999999997777665544
No 368
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=85.41 E-value=2.2 Score=21.02 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 407 RLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
+|+++++++....++++++.+.+.+.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888887765
No 369
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=84.76 E-value=17 Score=30.66 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=116.0
Q ss_pred CCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEE
Q 012996 123 RAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCK 202 (451)
Q Consensus 123 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~ 202 (451)
+.+..+.......+|+.-+.+|.++--.+...... ....+ +. ....|..+.. .+-....++..+.+|.++
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~~~~l--l~-~~e~i~~v~~-~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------SKVSL--KS-REEKIVGAFI-REKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------EECCC--SS-TTCCEEEEEE-GGGSCSEEEEEETTSEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------ccccc--CC-CCCEEEEEEC-CcCCCCEEEEEeCCCEEE
Confidence 45555554444556667777888776555432110 01112 32 3455666543 310226899999999999
Q ss_pred EEEcCCCc------eeeeeecccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC-CCCceeeeeeccCCcceeEE
Q 012996 203 VWSLLKGR------LLRNIVFPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-SYGMHIIGSLSDHSKAVTCL 275 (451)
Q Consensus 203 iwd~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~ 275 (451)
...+..-. ....+.....+..+........++..+..|.++.++...-..... ..+.. ...+.. ...|.++
T Consensus 94 r~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~-~i~L~~-~d~vv~~ 171 (276)
T 3no0_A 94 KIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ-GIKLEK-NDETSGL 171 (276)
T ss_dssp EEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-CCCCCT-TCCEEEE
T ss_pred EEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-EEccCC-CCEEEEE
Confidence 98865422 122233345566666666677888899999999888765332211 11212 223333 3456665
Q ss_pred EEec-CCEEEEEcCCCcEEEEeCCC-------CceEEEeecCCCCeeEEEEEecCceeeeccCCCCccc--cccC
Q 012996 276 AYST-GDLLISGSEDGMVRVWDPIT-------HNIVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS--SRRH 340 (451)
Q Consensus 276 ~~~~-~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i--w~~~ 340 (451)
...+ +..++..+..|.++...+.. ++-+..+ ...+.+..+....+...++..+.+|.+.. ++..
T Consensus 172 ~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 172 RIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 5555 77889999999988887542 2223333 22345555544444445666666777655 5543
No 370
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=84.60 E-value=17 Score=34.53 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=42.2
Q ss_pred ceeEEEEec-CCEEEEEcCC------------CcEEEEeCCCCceEEEeecCC-CCeeEEEEEecCceeeec
Q 012996 271 AVTCLAYST-GDLLISGSED------------GMVRVWDPITHNIVRMFRLAK-GPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~ 328 (451)
..-.|+|+| |+++++-..+ ..+.+.+..+++..+-+..+. ..++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 346699999 8877765432 246666777787766666553 589999999999988765
No 371
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=84.29 E-value=22 Score=31.67 Aligned_cols=248 Identities=12% Similarity=0.085 Sum_probs=122.8
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEEEe
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVRIW 149 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vw 149 (451)
.|..++.. ....+.-..||.|+.|-....-.+ ..+.. ....+..++++....+.+.-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 34455443 344444567899999975432111 11111 12234556676666677777889999999
Q ss_pred eCcchhhhhhhhcc---cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeee
Q 012996 150 SLLTVFEECESQRA---SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI 215 (451)
Q Consensus 150 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~ 215 (451)
-............. ....+..+ ....|..++.. . ...+....+|.|+.|-.... + ....+
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l--~~~~i~~va~G--~--~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v 205 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESL--RGIEVVDVAAG--G--AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 205 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEEC--S--SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred eCCCCCcCCCCCCccCcCCeEeccc--CCCeEEEEEeC--c--CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEe
Confidence 65432111000000 01111111 12245555543 2 45666678999999975321 1 01111
Q ss_pred e--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC--CCceeeeeecc-CCcceeEEEEecCCEEEEEcCCC
Q 012996 216 V--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS--YGMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 216 ~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
. ....+..++........++-..+|.|+.|-.......... ........+.. ....|..++.. ..+.++-..||
T Consensus 206 ~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G-~~hs~alt~~G 284 (389)
T 3kci_A 206 EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG-SQFSVALTKSG 284 (389)
T ss_dssp GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE-TTEEEEEETTS
T ss_pred cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC-CCEEEEEeCCC
Confidence 1 1234666666554456666788999999976542211100 00001111111 12245555544 45555567899
Q ss_pred cEEEEeCCCCc-----------eEEEeec-CCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 291 MVRVWDPITHN-----------IVRMFRL-AKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 291 ~i~iwd~~~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.|..|-....- ....+.. ....|..++... .+.+....||.+..|-..
T Consensus 285 ~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n 344 (389)
T 3kci_A 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDN 344 (389)
T ss_dssp CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECC
T ss_pred eEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCC
Confidence 99999654211 1111221 122455554433 334444678888888754
No 372
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=80.43 E-value=4.6 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENLHE 431 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 431 (451)
..+.++|.++++...+....+++.+++|.+
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 356677888888888888888888887754
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=79.75 E-value=37 Score=31.98 Aligned_cols=60 Identities=22% Similarity=0.207 Sum_probs=42.3
Q ss_pred cceeEEEEec-CCEEEEEcC------------CCcEEEEeCCCCceEEEeecC-CCCeeEEEEEecCceeeecc
Q 012996 270 KAVTCLAYST-GDLLISGSE------------DGMVRVWDPITHNIVRMFRLA-KGPVNNILVVRRPLYLNLGS 329 (451)
Q Consensus 270 ~~v~~~~~~~-~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~s 329 (451)
.....|.|.+ |.+.++... ...|..++..+++....+... ...++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 3566799999 777763321 125777787788766656543 35789999999999887653
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.59 E-value=74 Score=32.41 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=30.6
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 216 (451)
.+.+++..++. .++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~--~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTY--NVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTT--TEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCC--cEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45555555554 799999999999999999999888765
No 375
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=71.88 E-value=56 Score=29.35 Aligned_cols=243 Identities=14% Similarity=0.035 Sum_probs=118.4
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcCCCccee------------eeccccCCeeEEEEccCCcEEEEeeCCCcEEE
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLK------------KWHAHYRAVTCLVFSEDGSFLISGSEDGCVRI 148 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v 148 (451)
..|..|+.. +.+.+.-..||.|+.|-....-.+. ..-.....|..|+.. ..+.+.-..||.|..
T Consensus 75 ~~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G--~~hs~al~~~G~v~~ 150 (423)
T 3mvd_K 75 PDAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAG--DSHSACLLEDGRVFA 150 (423)
T ss_dssp SSEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred CCceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcC--cCeEEEEeCCCeEEE
Confidence 456666654 4455555778999999764321110 000112356555554 445556678899999
Q ss_pred eeC--cchhhhh-hhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-ce-------------
Q 012996 149 WSL--LTVFEEC-ESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RL------------- 211 (451)
Q Consensus 149 wd~--~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~------------- 211 (451)
|-. ....... ........++.. .....|..++... ...+.-..+|.|+.|-.... ++
T Consensus 151 wG~~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G~----~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 151 WGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASGA----DHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp EECEECSSSEEESBTTBCEEEEEES--STTCCEEEEEECS----SEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred EeCCCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecCC----CeEEEEecCCeEEEeeCCcCCccCCCcccccccccc
Confidence 975 2110000 000001111111 1233465655433 45666678999999964321 10
Q ss_pred --------eeeee--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCC-----CCCceeeeeeccCCcceeEEE
Q 012996 212 --------LRNIV--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTS-----SYGMHIIGSLSDHSKAVTCLA 276 (451)
Q Consensus 212 --------~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~ 276 (451)
...+. ....|..++.. ....++.-..+|.|+.|-......... .....++.. ....|..|+
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~---~~~~v~~ia 300 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKT---ELKDIRHIA 300 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEE---CCCSEEEEE
T ss_pred cccccccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEc---CCCCeEEEE
Confidence 01111 11234444432 122233336889999997765332111 000111111 134566555
Q ss_pred EecCCEEEEEcCCCcEEEEeCCCC---------c---eEEEeecCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 277 YSTGDLLISGSEDGMVRVWDPITH---------N---IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 277 ~~~~~~l~s~~~dg~i~iwd~~~~---------~---~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.. ..+.+.-..||.|..|-.... . ....+......|..|+.... +.+....||.++.|-..
T Consensus 301 ~G-~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n 373 (423)
T 3mvd_K 301 GG-QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSG 373 (423)
T ss_dssp EC-SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECC
T ss_pred cc-cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCC
Confidence 43 455556678999999964321 1 11222222235666665543 33333578888888654
No 376
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.62 E-value=10 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=30.9
Q ss_pred ceeEEEEec-CCEEEEEcCCCcEEEEeCCCCceEEEee
Q 012996 271 AVTCLAYST-GDLLISGSEDGMVRVWDPITHNIVRMFR 307 (451)
Q Consensus 271 ~v~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 307 (451)
.+.+++..+ ..++++-+.|+++|||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 445556666 7899999999999999999999988765
No 377
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=70.47 E-value=89 Score=31.03 Aligned_cols=151 Identities=13% Similarity=0.181 Sum_probs=72.8
Q ss_pred cCCeeEEEEccC-CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccC----CcCceeEEEEeecCCeeEEEEee
Q 012996 122 YRAVTCLVFSED-GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTG----HTLRITDIVIGYGGVSATIVSAS 196 (451)
Q Consensus 122 ~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~i~~~~~~~~~~l~s~~ 196 (451)
.+.|.+|.++|. ...++.++..+.|...+=.- .....+..... ....+.++++.+... ..++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG---------~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~-~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT---------SKWIPLNDFIEAQDMNIMGTESIALDPNNP-DRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT---------TEEEESCTTCCGGGGGGCSEEEEEEETTEE-EEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC---------CCeeECccCCCcccccCCceeEEEECCCCC-CEEEEEe
Confidence 468999999984 45667777767665443110 11111111000 134688999887433 3444443
Q ss_pred CCCc----EEEEE-cCCCceeeeeecc----------cceeEEEECCC-CCEEEEEeCCCcEEEEEccCCCCCCCCCCce
Q 012996 197 EDRT----CKVWS-LLKGRLLRNIVFP----------SVIDAIALDPA-EHVFYAGSRDGSIYIAALNAESPSTSSYGMH 260 (451)
Q Consensus 197 ~d~~----i~iwd-~~~~~~~~~~~~~----------~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 260 (451)
.... -.||- ...|+.-..+..+ ..+..++++|. ...++++...+.| |-....... ++
T Consensus 84 g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~T-----W~ 156 (789)
T 1sqj_A 84 GRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKT-----WT 156 (789)
T ss_dssp CSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSS-----CE
T ss_pred CccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcc-----cC
Confidence 2211 23332 2333332222211 13457888884 4567776644443 333222111 22
Q ss_pred eeeeec---cCCcceeEEEEec--CCEEEEEcCC
Q 012996 261 IIGSLS---DHSKAVTCLAYST--GDLLISGSED 289 (451)
Q Consensus 261 ~~~~~~---~~~~~v~~~~~~~--~~~l~s~~~d 289 (451)
.+.... .....+..+.++| +..++++..+
T Consensus 157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 222111 1124578888888 4456666554
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=68.20 E-value=46 Score=32.36 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=28.7
Q ss_pred CeeEEEECCCCcEEEEeccCCCEEEEEcCCCcceeeec
Q 012996 82 PIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLLKKWH 119 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 119 (451)
.|.++.+ +..++++-+.|.++++|++.++.++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 3555555 37799999999999999999998876653
No 379
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.17 E-value=74 Score=33.21 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=29.6
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV 216 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 216 (451)
+.+++..++. .++++-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~--~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTY--NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTT--TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCc--cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3444554554 799999999999999999999988765
No 380
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.24 E-value=16 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 404 EVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
+.+.|+.+...++..++++++.++++...
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555543
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=65.42 E-value=18 Score=34.33 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=41.7
Q ss_pred CeeEEEECCCCcEEEEeccC------------CCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEe
Q 012996 82 PIKPIAANSHGTYIAGGGQS------------GDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISG 140 (451)
Q Consensus 82 ~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~ 140 (451)
..--|.|+|.|+++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678899999977654322 23566676777776666554 4689999999999887765
No 382
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=64.04 E-value=64 Score=27.05 Aligned_cols=165 Identities=12% Similarity=0.016 Sum_probs=97.0
Q ss_pred CCCCeeEEEECC--CCcEEEEeccCCCEEEEEcCCCc------ceeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEee
Q 012996 79 PAEPIKPIAANS--HGTYIAGGGQSGDIYMWEVASGR------LLKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWS 150 (451)
Q Consensus 79 ~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd 150 (451)
..+.|..+.. + +..+++..+.+|.++...+..-. ....++. .+.+..+........++..+..|.+..+.
T Consensus 66 ~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~ 143 (276)
T 3no0_A 66 REEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFS 143 (276)
T ss_dssp TTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEE
Confidence 4567777755 4 46788889999999999875532 1112332 34555555555566788889999988887
Q ss_pred CcchhhhhhhhcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------CceeeeeecccceeE
Q 012996 151 LLTVFEECESQRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIVFPSVIDA 223 (451)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~i~~ 223 (451)
......... .........+.. ...|.++....++ ..++..+..|.++...+.. ++-+..+...+.+..
T Consensus 144 ~~eip~~gR--~a~Gv~~i~L~~-~d~vv~~~~~~~~--~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~ 218 (276)
T 3no0_A 144 VREVPPSTP--GARGVQGIKLEK-NDETSGLRIWNGE--PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVD 218 (276)
T ss_dssp GGGSCBCCT--TCCCEECCCCCT-TCCEEEEEEESSC--SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEE
T ss_pred hhhCCCcCC--CCCCEEEEccCC-CCEEEEEEEeCCC--CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEE
Confidence 754322110 011111222332 3456665544443 6888889999998887642 222222233334444
Q ss_pred EEECCCCCEEEEEeCCCcEEE--EEccCC
Q 012996 224 IALDPAEHVFYAGSRDGSIYI--AALNAE 250 (451)
Q Consensus 224 ~~~~~~~~~l~~~~~dg~i~i--~d~~~~ 250 (451)
+........++..+.+|.+.. ++...-
T Consensus 219 ~~~~~~~~~i~~~t~~G~~ir~~~~~~~i 247 (276)
T 3no0_A 219 LIPIKEEVELLITTKNGKAFYDKINQKDI 247 (276)
T ss_dssp EEEESSEEEEEEEETTSCEEEEEEEGGGS
T ss_pred EEEeCCCCEEEEEcCCCeEEEeeeCHHHC
Confidence 433334456777788888877 877653
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=62.19 E-value=32 Score=32.45 Aligned_cols=61 Identities=16% Similarity=0.136 Sum_probs=43.2
Q ss_pred CCeeEEEECCCCcEEEEecc------------CCCEEEEEcCCCcceeeeccc-cCCeeEEEEccCCcEEEEee
Q 012996 81 EPIKPIAANSHGTYIAGGGQ------------SGDIYMWEVASGRLLKKWHAH-YRAVTCLVFSEDGSFLISGS 141 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~ 141 (451)
.....|.|.++|.+.++... ...+..++..+++....+... ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35668999999988774321 125777777777766655543 35789999999999887764
No 384
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=60.71 E-value=90 Score=27.65 Aligned_cols=142 Identities=8% Similarity=0.115 Sum_probs=79.0
Q ss_pred ccEEEEECCCC--ceeeeec-------CCCCeeEEEEC---CC----CcEEEEe-ccCCCEEEEEcCCCcceeeec----
Q 012996 61 GSILYWSWSKP--QVEVKSL-------PAEPIKPIAAN---SH----GTYIAGG-GQSGDIYMWEVASGRLLKKWH---- 119 (451)
Q Consensus 61 g~i~vw~~~~~--~~~~~~~-------~~~~v~~~~~~---~~----~~~l~~~-~~dg~i~iwd~~~~~~~~~~~---- 119 (451)
-.|.+||+.+. ++..+.. ....+..+++. |+ +.++..+ ...+.|.|+|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 57999999998 6654432 13356777776 22 3343333 345679999999886554431
Q ss_pred ----------cc----cCCeeEEEEccC----CcEEEEeeCCCcEEEeeCcchhhhhhhhcccccceecccCC--cCcee
Q 012996 120 ----------AH----YRAVTCLVFSED----GSFLISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFTGH--TLRIT 179 (451)
Q Consensus 120 ----------~~----~~~v~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 179 (451)
+. ...|..|+++|+ ++.|.-....+ -++|.+.+........ ...+..+... ...-.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~---~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGG---KLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTC---CCCCEEEEECCTTCCEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcch---hhceEEeeecCCCCCcc
Confidence 10 246788888887 66776655543 3455554321111100 1111111111 12222
Q ss_pred EEEEe-ecCCeeEEEEeeCCCcEEEEEcCC
Q 012996 180 DIVIG-YGGVSATIVSASEDRTCKVWSLLK 208 (451)
Q Consensus 180 ~i~~~-~~~~~~~l~s~~~d~~i~iwd~~~ 208 (451)
.+++. ..| .++++--....|..|+..+
T Consensus 279 ~~~~D~~~G--~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 279 ALAYDPKTK--VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEECTTTC--EEEEEESSSSEEEEEETTS
T ss_pred eEEEeCCCC--eEEEEeccCCeEEEEeCCC
Confidence 33443 333 7777777888999999865
No 385
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.41 E-value=20 Score=19.72 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 400 ATEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 400 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
+..+.+++.-.++++..+...+++++..+|.+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677777888888888888887777654
No 386
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=59.11 E-value=45 Score=24.96 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=26.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 397 SSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 397 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
.+..+..++.+|.++++...+.+++..+.-+.+.+.
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~ 121 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRH 121 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888888888887777777777777766
No 387
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=58.48 E-value=50 Score=24.03 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=30.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012996 397 SSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELL 438 (451)
Q Consensus 397 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 438 (451)
.+..+..++.+|.++++...+.+++..+.-+.+++. +++++
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~-v~~~l 126 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH-VDSMI 126 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445567777888888888888888888877777777 44443
No 388
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=55.26 E-value=1.2e+02 Score=27.23 Aligned_cols=240 Identities=12% Similarity=-0.032 Sum_probs=114.9
Q ss_pred ccCcccCCCCCCccEEEEECCCC-c------------eeeeecCCCCeeEEEECCCCcEEEEeccCCCEEEEEc--CC-C
Q 012996 49 SSQLREQPSASSGSILYWSWSKP-Q------------VEVKSLPAEPIKPIAANSHGTYIAGGGQSGDIYMWEV--AS-G 112 (451)
Q Consensus 49 ~~~~l~~~~~d~g~i~vw~~~~~-~------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~ 112 (451)
.+.+.+....+ |.|..|-.+.. + .+........|..|+... .+.++-..+|.|+.|-. .. +
T Consensus 83 G~~h~~~l~~~-G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~--~hs~al~~~G~v~~wG~~~n~~G 159 (423)
T 3mvd_K 83 GGMHNLVLTKS-GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD--SHSACLLEDGRVFAWGSFRDSHG 159 (423)
T ss_dssp CSSEEEEEETT-SCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS--SEEEEEETTSCEEEEECEECSSS
T ss_pred CCCeEEEEeCC-CeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc--CeEEEEeCCCeEEEEeCCCCCCC
Confidence 33444444455 89999976421 1 111111234566666653 33444467899999985 22 2
Q ss_pred cce---------eeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhh------------cccccceecc
Q 012996 113 RLL---------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQ------------RASHLYLHSF 171 (451)
Q Consensus 113 ~~~---------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~~~~~ 171 (451)
++- .........|..|+.. ..+.+.-..||.|..|-........... .....+....
T Consensus 160 qlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~ 237 (423)
T 3mvd_K 160 NMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLI 237 (423)
T ss_dssp EEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEEC
T ss_pred CcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEe
Confidence 110 0001122346666554 4456666789999999653311100000 0000111111
Q ss_pred cCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCc-----------eeeeee-cccceeEEEECCCCCEEEEEeCC
Q 012996 172 TGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGR-----------LLRNIV-FPSVIDAIALDPAEHVFYAGSRD 239 (451)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d 239 (451)
......|..++.... ..++.-..+|.|+.|-....- ...... ....|..++. .....++-..+
T Consensus 238 ~~~~~~v~~i~~g~~---~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~alt~~ 312 (423)
T 3mvd_K 238 ITRAKPFEAIWATNY---CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTVILTTD 312 (423)
T ss_dssp CTTCCCEEEEEEETT---EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEEEEETT
T ss_pred ecCCccEEEEEECCc---EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEEEEeCC
Confidence 112234555554322 344444688999999654311 011111 1234555444 33445555788
Q ss_pred CcEEEEEccCCCCCCCCC---CceeeeeeccCCcceeEEEEecCCEEEEEcCCCcEEEEeCCC
Q 012996 240 GSIYIAALNAESPSTSSY---GMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~ 299 (451)
|.|+.|-........... .......+..-...|..|+.. ....++-..||.|+.|-...
T Consensus 313 G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G-~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 313 LKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG-EVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE-TTEEEEEETTSCEEEEECCT
T ss_pred CcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC-CCeEEEEcCCCCEEEECCCC
Confidence 999999765422111000 001111222222356666655 34445557899999997554
No 389
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=55.04 E-value=11 Score=23.67 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLD 439 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 439 (451)
.++.+.|+++++++.+...++...+.-|.+..--+.+.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEql~ 51 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLASPEQLE 51 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 34567888888888888888888887777665544443
No 390
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.11 E-value=17 Score=21.48 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYEN 428 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 428 (451)
...++++|+.+...+.+..++++....+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888888888877776543
No 391
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=53.92 E-value=1.2e+02 Score=27.01 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=115.8
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVR 147 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 147 (451)
...|..++...+. .++....++.|+.|-....-.+ ..+.. ....|..|+.. ..+.+.-..||.|.
T Consensus 67 ~~~i~~va~G~~h-t~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~ 143 (406)
T 4d9s_A 67 GHQIVSVTCGADH-TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQ 143 (406)
T ss_dssp TSCEEEEEECSSE-EEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCCEEEEEeCcce-EEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEE
Confidence 3467777765432 2333233458999965332111 01111 12256666554 44566667899999
Q ss_pred EeeCcchhhhhhhhccc-ccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeee
Q 012996 148 IWSLLTVFEECESQRAS-HLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI 215 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~ 215 (451)
.|-.............. ..+..........|..++... ...+.-..+|.|+.|-.... + ....+
T Consensus 144 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~----~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v 219 (406)
T 4d9s_A 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGA----EHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERV 219 (406)
T ss_dssp EEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECS----SEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEEC
T ss_pred EeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCC----CeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEe
Confidence 99754311110000000 001110011122455554432 45666678999999964321 1 01111
Q ss_pred e--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCCC--Cceeeeeecc-CCcceeEEEEecCCEEEEEcCCC
Q 012996 216 V--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSSY--GMHIIGSLSD-HSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 216 ~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~-~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
. ....|..++. .....++-..+|.|+.|-........... .......+.. ....|..++-. ..+.++-..||
T Consensus 220 ~~~~~~~i~~va~--G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G-~~hs~alt~~G 296 (406)
T 4d9s_A 220 TSTGGEKMSMVAC--GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGG-WRHTMALTSDG 296 (406)
T ss_dssp CCSTTCCEEEEEE--CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-SSEEEEEETTS
T ss_pred cccCCceEEEEEE--CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEec-CCEEEEEcCCC
Confidence 1 1133444444 33444555788999999765432211100 0000111111 12345555443 45555667899
Q ss_pred cEEEEeCCCC-ce----------EEEee-cCCCCeeEEEEEecCceeeeccCCCCccccccC
Q 012996 291 MVRVWDPITH-NI----------VRMFR-LAKGPVNNILVVRRPLYLNLGSFSNPHTSSRRH 340 (451)
Q Consensus 291 ~i~iwd~~~~-~~----------~~~~~-~~~~~v~~l~~s~~~~~l~~~s~d~~i~iw~~~ 340 (451)
.|..|-.... ++ ...+. .....|..++... .+.+.-..||.+..|-..
T Consensus 297 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~--~hs~alt~~G~v~~wG~n 356 (406)
T 4d9s_A 297 KLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGW--RHTLAVTERNNVFAWGRG 356 (406)
T ss_dssp CEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECS--SEEEEEETTSCEEEEECC
T ss_pred eEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCC--CeEEEEeCCCCEEEecCC
Confidence 9999964431 10 01111 1123455554432 333444567888888654
No 392
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=53.86 E-value=19 Score=35.00 Aligned_cols=37 Identities=14% Similarity=0.531 Sum_probs=30.2
Q ss_pred ceeEEEEecCCEEEEEcCCCcEEEEeCCCCceEEEeec
Q 012996 271 AVTCLAYSTGDLLISGSEDGMVRVWDPITHNIVRMFRL 308 (451)
Q Consensus 271 ~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 308 (451)
.|.++.+. ..++++-+.|.++|+|++.+++++.+...
T Consensus 223 ~Is~~~~~-~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFH-ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccC-CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 45554443 78999999999999999999999887664
No 393
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.54 E-value=24 Score=18.74 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
..+.+++.++++.++...+++++..--+|+
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777766555444
No 394
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=53.33 E-value=35 Score=23.76 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
+.+++.|..++++..+.++++++.+..+...
T Consensus 77 qgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 77 EGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 4444555555555555555555555544444
No 395
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.15 E-value=50 Score=22.56 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCccC
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENLHEFCVNELLDGDQVDGSKRNV 450 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 450 (451)
.++...++++++.+....+.|++..+.|.-......+++ .-++.+.+|
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~G-d~~~~~TKV 58 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQG-DYDQSRTKV 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCS-CCCTTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCccCee
Confidence 346677777777777777778877777776655555444 444444444
No 396
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=48.20 E-value=1.1e+02 Score=28.35 Aligned_cols=68 Identities=24% Similarity=0.335 Sum_probs=45.3
Q ss_pred ceeEEEEeec----CCeeEEEEeeCCCcEEEEEcC-CCc-------eeeeee---cccceeEEEECCCCCEEEEEeCCCc
Q 012996 177 RITDIVIGYG----GVSATIVSASEDRTCKVWSLL-KGR-------LLRNIV---FPSVIDAIALDPAEHVFYAGSRDGS 241 (451)
Q Consensus 177 ~i~~i~~~~~----~~~~~l~s~~~d~~i~iwd~~-~~~-------~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~ 241 (451)
..++|+...- +.-..++.|+.+|.|.-.-+. .+. .+..+. .+.+|..+.++++..+|++++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4577766543 444678899999987544332 211 222332 3578999999999999999998876
Q ss_pred EEE
Q 012996 242 IYI 244 (451)
Q Consensus 242 i~i 244 (451)
+++
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 397
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=47.37 E-value=1.5e+02 Score=26.31 Aligned_cols=209 Identities=15% Similarity=0.085 Sum_probs=100.8
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-----------eeecc-ccCCeeEEEEccCCcEEEEeeCCCcEE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-----------KKWHA-HYRAVTCLVFSEDGSFLISGSEDGCVR 147 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~ 147 (451)
...|..|+... .+.++-..+|.|+.|-....-.+ ..+.. ....|..++.. ..+.+.-..+|.|.
T Consensus 120 ~~~i~~ia~G~--~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~ 195 (406)
T 4d9s_A 120 GIRIKQIACGD--SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLY 195 (406)
T ss_dssp TCCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEE
T ss_pred CCCEEEEEECh--hheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC--CCeEEEEeCCCCEE
Confidence 34677777653 34444467899999975432111 11111 11245555554 44566667899999
Q ss_pred EeeCcchhhhhhhhcc-cccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c----------eeeee
Q 012996 148 IWSLLTVFEECESQRA-SHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R----------LLRNI 215 (451)
Q Consensus 148 vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----------~~~~~ 215 (451)
.|-............. ...+..........|..++... ...+.-..+|.|+.|-.... + ....+
T Consensus 196 ~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~----~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v 271 (406)
T 4d9s_A 196 GWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGW----RHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKL 271 (406)
T ss_dssp EEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECS----SEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEEC
T ss_pred EeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECC----CcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEe
Confidence 9965331110000000 0001111111123455554432 45556678999999965321 1 01111
Q ss_pred e--cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC---CCceeeeeeccCCcceeEEEEecCCEEEEEcCCC
Q 012996 216 V--FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS---YGMHIIGSLSDHSKAVTCLAYSTGDLLISGSEDG 290 (451)
Q Consensus 216 ~--~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~dg 290 (451)
. ....|..++. .....++-..+|.|+.|-.......... ....+..........|..++.. ....++-..||
T Consensus 272 ~~~~~~~v~~i~~--G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G-~~hs~alt~~G 348 (406)
T 4d9s_A 272 EALSNSFISQISG--GWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCG-WRHTLAVTERN 348 (406)
T ss_dssp GGGTTSCEEEEEE--CSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEEC-SSEEEEEETTS
T ss_pred cccCCCCEEEEEe--cCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeC-CCeEEEEeCCC
Confidence 1 1223555544 3344555578999999976553221110 0011111111122345555443 44555556788
Q ss_pred cEEEEeCCC
Q 012996 291 MVRVWDPIT 299 (451)
Q Consensus 291 ~i~iwd~~~ 299 (451)
.|..|-...
T Consensus 349 ~v~~wG~n~ 357 (406)
T 4d9s_A 349 NVFAWGRGT 357 (406)
T ss_dssp CEEEEECCT
T ss_pred CEEEecCCC
Confidence 999997543
No 398
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=47.16 E-value=2.2e+02 Score=28.14 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=36.4
Q ss_pred CCCeeEEEECCC-CcEEEEeccCCCEEEEEcCCCcceeeecc-------ccCCeeEEEEccC-CcEEEEee
Q 012996 80 AEPIKPIAANSH-GTYIAGGGQSGDIYMWEVASGRLLKKWHA-------HYRAVTCLVFSED-GSFLISGS 141 (451)
Q Consensus 80 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~-~~~l~s~~ 141 (451)
...|.+|+++|. ...+.+++..+.|...+ ..|+.-..+.. ....|.+|++.|. ...++.+.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 468999999985 35566666667666554 33332222221 1346899999983 34444443
No 399
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.83 E-value=29 Score=33.09 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=5.8
Q ss_pred HHhhhcCCCCCCcCccC
Q 012996 434 VNELLDGDQVDGSKRNV 450 (451)
Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (451)
.+++.++-+.+++.|+|
T Consensus 574 ~~~l~~~~~~~~~~~~~ 590 (597)
T 3oja_B 574 VKQLEAKKNRNPDTRRV 590 (597)
T ss_dssp HHHHHHTTC--------
T ss_pred HHHHHHHhcCCCccccc
Confidence 46666666777776665
No 400
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=46.21 E-value=70 Score=30.01 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=46.2
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC----ceeeeee---ccccee-EEEECCCCCEEEEEeCCCcEEE
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLLKG----RLLRNIV---FPSVID-AIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~---~~~~i~-~~~~~~~~~~l~~~~~dg~i~i 244 (451)
..++++....+.-..++.|+.+|.|.-..+... ..+..+. .+.+|. .+.+++++.+|++++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 356676666555578889999998865555322 1233333 245775 8999999999999988765554
No 401
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=45.56 E-value=2.3e+02 Score=27.72 Aligned_cols=232 Identities=10% Similarity=0.025 Sum_probs=113.5
Q ss_pred EeeccCcccCC----CCCCccEEEEECCCCceeeeecC-CC--------CeeEEEECCCCcEEEEe----------ccCC
Q 012996 46 FLASSQLREQP----SASSGSILYWSWSKPQVEVKSLP-AE--------PIKPIAANSHGTYIAGG----------GQSG 102 (451)
Q Consensus 46 ~~~~~~~l~~~----~~d~g~i~vw~~~~~~~~~~~~~-~~--------~v~~~~~~~~~~~l~~~----------~~dg 102 (451)
++|++++++.+ |+|-..++++|+.+++....... .. ....++|..++.++++. +...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 66788877654 44557899999998876532222 10 11344776444444431 1124
Q ss_pred CEEEEEcCCCc--ceeeeccccCCe-eEEEEccCCc-----EEEEeeCC---CcEEEeeCcchhhhhhhhcccccceecc
Q 012996 103 DIYMWEVASGR--LLKKWHAHYRAV-TCLVFSEDGS-----FLISGSED---GCVRIWSLLTVFEECESQRASHLYLHSF 171 (451)
Q Consensus 103 ~i~iwd~~~~~--~~~~~~~~~~~v-~~~~~~~~~~-----~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 171 (451)
.|+.|.+-+.. -...+.+....+ .....+++++ .+++.+.+ ..+.+.+... .........
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~l~ 287 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY---------KNLKLQKIN 287 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS---------SSCEEEECC
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC---------CCCcceEee
Confidence 58888765542 222343333333 2344556665 24443322 3455555432 111111111
Q ss_pred cCCcCceeEEEEeecCCeeEEEEe----------eCCCcEEEEEcCCCc-------eeee-ee--cccceeEEEECCCCC
Q 012996 172 TGHTLRITDIVIGYGGVSATIVSA----------SEDRTCKVWSLLKGR-------LLRN-IV--FPSVIDAIALDPAEH 231 (451)
Q Consensus 172 ~~~~~~i~~i~~~~~~~~~~l~s~----------~~d~~i~iwd~~~~~-------~~~~-~~--~~~~i~~~~~~~~~~ 231 (451)
..... .+.....+ .+++.. ...+.|...|+.++. .... +. ....+..+.+..+ .
T Consensus 288 ~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 288 MPSDA---TLQGSFKE--YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp SCTTC---EEEEEETT--EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred cCCcc---eEeeeECC--EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 11111 12233443 444422 246779999987642 1222 32 3456778888865 5
Q ss_pred EEEEEeCCCc--EEEEEccCCCCCCCCCCceeeeeeccCCcceeEEEEec--CCEEEEEcC---CCcEEEEeCC
Q 012996 232 VFYAGSRDGS--IYIAALNAESPSTSSYGMHIIGSLSDHSKAVTCLAYST--GDLLISGSE---DGMVRVWDPI 298 (451)
Q Consensus 232 ~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~s~~~---dg~i~iwd~~ 298 (451)
++++...++. ++++++.++... ...+..+.. .+.+.....++ +.++++.+. -+.+..+|+.
T Consensus 362 l~~~~~~~~~~~l~~~~~~~g~~~-----~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATYDNVVAKVVTFTLENEQWT-----KPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEETTEEEEEEECEETTEEC-----CCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEECCEEEEEEEECCCCceE-----EEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6666666764 667776543100 011011211 23455555555 345554443 3567788876
No 402
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=43.14 E-value=67 Score=20.92 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012996 411 ECNRTLQMVQQWKKMYENL 429 (451)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~l 429 (451)
+.+++++....|+.+...|
T Consensus 56 en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 56 ENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333
No 403
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=42.89 E-value=1.8e+02 Score=25.77 Aligned_cols=150 Identities=10% Similarity=0.069 Sum_probs=81.1
Q ss_pred cCceeEEEEe-ec----CCeeEEEEe-eCCCcEEEEEcCCCceeeeee-------------------cccceeEEEECCC
Q 012996 175 TLRITDIVIG-YG----GVSATIVSA-SEDRTCKVWSLLKGRLLRNIV-------------------FPSVIDAIALDPA 229 (451)
Q Consensus 175 ~~~i~~i~~~-~~----~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~-------------------~~~~i~~~~~~~~ 229 (451)
...+..+++. .. +.+.+++.+ +..+.|.++|+.+++.-+... ....+..++++|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3567788877 21 112344433 356789999999876554331 1236788999997
Q ss_pred ----CCEEEEEeCCC-cEEEEEc---cCCCCCCCCCCceeeeeeccCCcceeEEEEe-c-CCEEEEEcCCCcEEEEeCCC
Q 012996 230 ----EHVFYAGSRDG-SIYIAAL---NAESPSTSSYGMHIIGSLSDHSKAVTCLAYS-T-GDLLISGSEDGMVRVWDPIT 299 (451)
Q Consensus 230 ----~~~l~~~~~dg-~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~s~~~dg~i~iwd~~~ 299 (451)
++.|+-..-.+ .++-... +.... ....+.+.. ++....-..+++. . |.++++--..+.|..|+..+
T Consensus 231 ~~~~~~~LYf~plss~~ly~V~T~~L~~~~~---~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 231 DSEGNRPAYYLAGSAIKVYSVNTKELKQKGG---KLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTSCCEEEEEESSCSEEEEEEHHHHSSTTC---CCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred cCCCCeEEEEEECCCCcEEEEEHHHhhCcch---hhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 67777665544 3444432 22211 111121211 1111333456675 4 77777777888999999875
Q ss_pred -C---ceEEEeec--CCCCeeEEEEEecCceeeec
Q 012996 300 -H---NIVRMFRL--AKGPVNNILVVRRPLYLNLG 328 (451)
Q Consensus 300 -~---~~~~~~~~--~~~~v~~l~~s~~~~~l~~~ 328 (451)
. .....+.. .-....++.+.++|.+.+.+
T Consensus 307 ~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 307 MPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp CSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 1 12222221 12246667766666544443
No 404
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.19 E-value=76 Score=21.05 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
.+.+.+.|.++...++..+++++.....|.+.
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 405
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.22 E-value=97 Score=20.21 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
...+.++|.+++..+.+....+++.++++...
T Consensus 44 aL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666544
No 406
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.57 E-value=62 Score=21.47 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLHE 431 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 431 (451)
.+.+...|+.+++.+..++..++.++.++-.
T Consensus 48 Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 48 LTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3445555666666666666555555555443
No 407
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=32.31 E-value=1.5e+02 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhcCC
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYEN--LHEFCVNELLDGD 441 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~ 441 (451)
..+++.+++++..++++.++++.+.+. .+..++++|+.+.
T Consensus 121 h~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 121 HKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666666666666666666543 3455566666553
No 408
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=32.27 E-value=1.1e+02 Score=20.40 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENLHEFCV 434 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (451)
+.++++.+..++++++....++..++++.+.+.
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~Qk 97 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFRDIYKRFSEYQK 97 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444455555666666666666666655554433
No 409
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.14 E-value=1.1e+02 Score=20.01 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
++.++|.+++....+.+..++..+.+|.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455544444444444444444433
No 410
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=31.95 E-value=1.1e+02 Score=20.48 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 397 SSAATEMEVERLKRECNRTLQMVQQWKKMYENL 429 (451)
Q Consensus 397 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 429 (451)
.+.-.+.++.+|..++.++......|.....+|
T Consensus 46 n~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 46 NAGLGEFRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456678888888888888888887766544
No 411
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=31.91 E-value=2.2e+02 Score=26.51 Aligned_cols=67 Identities=7% Similarity=0.032 Sum_probs=44.5
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CC--ceeeeee--cccce-eEEEECCCCCEEEEEeCCCcEEE
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLL-KG--RLLRNIV--FPSVI-DAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~--~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
.+.|+......-..++.|+.+|.|.-.-+. .+ ..+..+. .+.+| ..+.++++...|++++..+.+++
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v 461 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSIQQGSAVSRDLTFDGTFEHLYVMTQSTLLKV 461 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEESSTTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeeccCCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence 566666554444678889999988754443 21 2223332 34567 48999999999999988876665
No 412
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=30.08 E-value=3.1e+02 Score=26.50 Aligned_cols=55 Identities=25% Similarity=0.353 Sum_probs=37.5
Q ss_pred eEEEEeeCCCcEE-EEEcCCCc-------eeee---eecccceeEEEECCCCCEEEEEeCCCcEEE
Q 012996 190 ATIVSASEDRTCK-VWSLLKGR-------LLRN---IVFPSVIDAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 190 ~~l~s~~~d~~i~-iwd~~~~~-------~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
..++.|+.+|.|. +.....+. .+.. +..+.+|..|.++++...|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 5788899999875 33222211 1222 235678999999999999999998876655
No 413
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.76 E-value=84 Score=24.17 Aligned_cols=7 Identities=14% Similarity=0.278 Sum_probs=0.0
Q ss_pred CcEEEEe
Q 012996 290 GMVRVWD 296 (451)
Q Consensus 290 g~i~iwd 296 (451)
|++.+|-
T Consensus 14 ~~~~~~~ 20 (175)
T 3lay_A 14 GTENLYF 20 (175)
T ss_dssp -------
T ss_pred chhHHHh
Confidence 3444443
No 414
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.17 E-value=2.5e+02 Score=23.06 Aligned_cols=149 Identities=11% Similarity=0.026 Sum_probs=79.9
Q ss_pred EEEEeccCCCEEEEEcCCCcc-eeeeccccCCeeEEEEccCCcEEEEeeCCCcEEEeeCcchhhhhhhhcccccce---e
Q 012996 94 YIAGGGQSGDIYMWEVASGRL-LKKWHAHYRAVTCLVFSEDGSFLISGSEDGCVRIWSLLTVFEECESQRASHLYL---H 169 (451)
Q Consensus 94 ~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~ 169 (451)
..++.+.+|.|+--....... ...++.. +.+..+........|+..+..|.+.-+........ .....++ .
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~----r~~G~~i~~~i 78 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA----RGQGEPLTGKL 78 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS----SSCCEEGGGTC
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc----CCCCeEeeeee
Confidence 345556777776555432111 1123333 33444433334445666778888777666442111 0111111 1
Q ss_pred cccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-------CceeeeeecccceeEEEEC-CCCCEEEEEeCCCc
Q 012996 170 SFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLK-------GRLLRNIVFPSVIDAIALD-PAEHVFYAGSRDGS 241 (451)
Q Consensus 170 ~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~ 241 (451)
.+. ....|.++....+. .+++.++..|.++...+.. +.....+.....+..+... ..+..++..+.+|.
T Consensus 79 ~L~-~~e~Iv~~~~~~~~--~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~ 155 (256)
T 1zvt_A 79 TLP-PGATVDHMLMESDD--QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 155 (256)
T ss_dssp CCC-TTCCEEEEECCCTT--CEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSE
T ss_pred cCC-CCCEEEEEEEeCCC--CEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCe
Confidence 122 23456666432233 6788889999999887642 2222233333445444454 35567888999999
Q ss_pred EEEEEccCC
Q 012996 242 IYIAALNAE 250 (451)
Q Consensus 242 i~i~d~~~~ 250 (451)
+..++...-
T Consensus 156 ~lrf~~~ei 164 (256)
T 1zvt_A 156 MLMFPVSDL 164 (256)
T ss_dssp EEEEEGGGS
T ss_pred EEEEEHHHC
Confidence 998988653
No 415
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.12 E-value=71 Score=16.77 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWKKMY 426 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~ 426 (451)
.++++|..+...+...+..++.+.
T Consensus 8 ~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344445555554444444444443
No 416
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=27.93 E-value=3.5e+02 Score=24.62 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCeeEEEECCCCcEEEEeccCCCEEEEEcC---CCcc---------e---eeecc-ccCCeeEEEEccCCcEEEEeeCCC
Q 012996 81 EPIKPIAANSHGTYIAGGGQSGDIYMWEVA---SGRL---------L---KKWHA-HYRAVTCLVFSEDGSFLISGSEDG 144 (451)
Q Consensus 81 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~---------~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg 144 (451)
..|..|+... ...++-..+|.|+.|-.. .+.+ . ..+.. ....|..|+.. ..+.+.-..+|
T Consensus 148 ~~i~~va~G~--~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~~G 223 (473)
T 3of7_A 148 HKVVQLAATD--NMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDEEG 223 (473)
T ss_dssp CCEEEEEECS--SEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEEccC--CEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeCCC
Confidence 4566666653 334444678999999751 1111 0 01111 11236666654 44566667899
Q ss_pred cEEEeeCcchhhhhhhhc-----ccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-c--------
Q 012996 145 CVRIWSLLTVFEECESQR-----ASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-R-------- 210 (451)
Q Consensus 145 ~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~-------- 210 (451)
.|..|-............ ....+. .+ ....|..++.. . ...+.-..+|.|+.|-.... +
T Consensus 224 ~v~~wG~n~~GqLG~~~~~~~~~~~~~p~-~~--~~~~v~~Ia~G--~--~hs~alt~~G~v~~wG~n~~GqlG~~~~~~ 296 (473)
T 3of7_A 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPR-PF--GLRHVKYIASG--E--NHCFALTKDNKLVSWGLNQFGQCGVSEDVE 296 (473)
T ss_dssp CEEEEECCTTSTTSSCCCGGGTTTTCSCE-EC--SCCSEEEEEEC--S--SEEEEEETTSCEEEEEECTTSTTCCCSCCC
T ss_pred eEEEEeCCCCCCCCCCccccccccccCce-ec--CCcceEEEecC--C--CeEEEEecCCCEEEeCCCCCCCcCCCCccc
Confidence 999996543211100000 000000 01 11345555543 2 45566667999999965321 1
Q ss_pred ---ee---eeeec--ccceeEEEECCCCCEEEEEeCCCcEEEEEccC
Q 012996 211 ---LL---RNIVF--PSVIDAIALDPAEHVFYAGSRDGSIYIAALNA 249 (451)
Q Consensus 211 ---~~---~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 249 (451)
.. ..+.. ...|..++.. ....++-..+|.|+.|-...
T Consensus 297 ~~~~~~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 297 DGALVTKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp TTCEEEEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEECT
T ss_pred CCceeeccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECCC
Confidence 10 11111 1345555543 33444457889999997654
No 417
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=27.91 E-value=75 Score=16.95 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 012996 404 EVERLKRECNRTLQM 418 (451)
Q Consensus 404 ~~~~l~~~~~~~~~~ 418 (451)
+++.+++++..++..
T Consensus 28 elqalekklaalksk 42 (48)
T 1g6u_A 28 ELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 418
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.87 E-value=1.5e+02 Score=20.52 Aligned_cols=58 Identities=7% Similarity=-0.088 Sum_probs=27.3
Q ss_pred cCcccCCCCCCccEEEEECCCCceeeeecC--CCCeeEEEECCCCcEEEEeccCCCEEEEEcC
Q 012996 50 SQLREQPSASSGSILYWSWSKPQVEVKSLP--AEPIKPIAANSHGTYIAGGGQSGDIYMWEVA 110 (451)
Q Consensus 50 ~~~l~~~~~d~g~i~vw~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 110 (451)
+.+.+.-..| |.+.+|+............ ...-..+.+..+|++++... ++.+ +|...
T Consensus 24 g~~~L~~q~d-GNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~ 83 (113)
T 3mez_B 24 RDYSLVMRDD-CNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSN 83 (113)
T ss_dssp TTEEEEECTT-SCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECS
T ss_pred CCEEEEEcCC-CEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECC
Confidence 3333333333 6666666432222222211 11224567777888776633 4443 67643
No 419
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=27.15 E-value=75 Score=16.68 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 012996 410 RECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
.+..++....++++++.++|.+.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~k 29 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555544
No 420
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=27.13 E-value=1.6e+02 Score=21.05 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 404 EVERLKRECNRTLQMVQQWKKMYENL 429 (451)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~~~~~~~~l 429 (451)
++++|+++++......+.+++.+.+-
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~k 30 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTK 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444455544433
No 421
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.12 E-value=55 Score=15.17 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 012996 407 RLKRECN 413 (451)
Q Consensus 407 ~l~~~~~ 413 (451)
++++.++
T Consensus 12 dlqerlr 18 (27)
T 3twe_A 12 DLQERLR 18 (27)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 422
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=25.64 E-value=1.1e+02 Score=18.33 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 404 EVERLKRECNRTLQMVQQWKKMYENLHE 431 (451)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 431 (451)
.+..++.++.++++..+.+...++.+++
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 423
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.63 E-value=1.3e+02 Score=19.02 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 405 VERLKRECNRTLQMVQQWKKMYEN 428 (451)
Q Consensus 405 ~~~l~~~~~~~~~~~~~~~~~~~~ 428 (451)
+++++.++.+..+.+++++...++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544444444444443
No 424
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=25.63 E-value=1.2e+02 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.330 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLHEFC 433 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (451)
.+.+++.|+++++.+.+.+++++.+..++.+.+
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777677777766666666543
No 425
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.53 E-value=1.4e+02 Score=19.45 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 401 TEMEVERLKRECNRTLQMVQQWKKMYENLHEFC 433 (451)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (451)
.+..+..+..++.+++...+.+...++.|++..
T Consensus 31 ~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK 63 (84)
T 1gk4_A 31 YQDTIGRLQDEIQNMKEEMARHLREYQDLLNVK 63 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677777766666666666666554
No 426
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=25.30 E-value=4.8e+02 Score=25.37 Aligned_cols=183 Identities=9% Similarity=0.062 Sum_probs=0.0
Q ss_pred eEEEeecCCCCCCe----------EEEECccCceeeeeecCCCCCCceEEecceEeeccCcccCCCCCCccEEEEECCCC
Q 012996 2 ELLIASSSVADTGI----------GCWDLESGAEQLRYKSCASPPHGLACVGQRFLASSQLREQPSASSGSILYWSWSKP 71 (451)
Q Consensus 2 e~~l~s~~~~dg~i----------~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~g~i~vw~~~~~ 71 (451)
|.++++-+ .+|.| .-..+..+..+..+.....|..-+. |...|+. -.+.+|++...
T Consensus 472 e~v~v~ls-~~GyiKr~~g~~~~~~~~~~k~~D~~~~~~~~~t~d~ll~-----ft~~Gr~--------y~~~~~~lP~~ 537 (716)
T 1zvu_A 472 EPVTIVLS-QMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF-----VDSTGRS--------YAIDPITLPSA 537 (716)
T ss_dssp CCCCEEEE-TTTEEEECCC---------------CCEEECCCSSSCEEE-----EETTSEE--------EEECTTTSCCC
T ss_pred ceEEEEEe-cCCeEeccCCCCcCccccccCCCCeEEEEEEecCCCEEEE-----EecCCcE--------EEEEeeecccc
Q ss_pred ceeeeec-------CCCCeeEEEECCCCcEEEEeccCCCEEEEEc-------CCCcceeeeccccCCeeEEEEccCCcEE
Q 012996 72 QVEVKSL-------PAEPIKPIAANSHGTYIAGGGQSGDIYMWEV-------ASGRLLKKWHAHYRAVTCLVFSEDGSFL 137 (451)
Q Consensus 72 ~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l 137 (451)
.-.-... ..+.|..+...+++.+++.++..|.++.-.+ ..|.....+.....-|........+..+
T Consensus 538 ~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v 617 (716)
T 1zvu_A 538 RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 617 (716)
T ss_dssp C---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEE
T ss_pred cccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEE
Q ss_pred EEeeCCCcEEEeeCcchhhhhhhhcccccceeccc-----CCcCceeEEEEeecCCeeEEEEeeCCCcEEE
Q 012996 138 ISGSEDGCVRIWSLLTVFEECESQRASHLYLHSFT-----GHTLRITDIVIGYGGVSATIVSASEDRTCKV 203 (451)
Q Consensus 138 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~i 203 (451)
+..+.+|.+..|.......... ........+. .....|.++.....+ ..+++.+..++.++
T Consensus 618 ~l~t~~g~~lrf~~~~v~~~gr---~~GV~~i~l~~~~~k~~~d~v~~~~~~~~~--~~l~~~~gk~~~~~ 683 (716)
T 1zvu_A 618 LAITQAGRMLMFPVSDLPQLSK---GKGNKIINIPSAEAARGEDGLAQLYVLPPQ--STLTIHVGKRKIKL 683 (716)
T ss_dssp EEEETTSEEEEEESTTSCBCSS---BSCEESSCCCHHHHHTTSSCEEEEEEECSS--CCEEEEETTEEEEE
T ss_pred EEEeCCCeEEEEEHHHCCccCc---ccCeEEEEecccccCCCCCEEEEEEEecCC--CeEEEEECCccccc
No 427
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=25.05 E-value=4.9e+02 Score=25.40 Aligned_cols=107 Identities=13% Similarity=0.048 Sum_probs=56.2
Q ss_pred CceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCCceeeeee-c-------ccceeEEEECC-CCCEEEEEeCC-------
Q 012996 176 LRITDIVIGYGGVSATIVSASEDRTCKVWSLLKGRLLRNIV-F-------PSVIDAIALDP-AEHVFYAGSRD------- 239 (451)
Q Consensus 176 ~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~-------~~~i~~~~~~~-~~~~l~~~~~d------- 239 (451)
+.|..|+++|... ..++.+...+.|..++- .++.-..+. . ...+.+++++| +.+.++++...
T Consensus 23 g~i~~i~~~p~~~-~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 23 GFMPGIVFNETEK-DLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLP 100 (737)
T ss_dssp SCCCEEEECSSST-TCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSC
T ss_pred ceeeEEEECCCCC-CEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEeccccccccc
Confidence 3789999998754 35556666666666653 233222221 1 24589999999 44555555432
Q ss_pred CcEEEEEccCCCCCCCCCCceeeee-ec--cC---CcceeEEEEec--CCEEEEEcCC
Q 012996 240 GSIYIAALNAESPSTSSYGMHIIGS-LS--DH---SKAVTCLAYST--GDLLISGSED 289 (451)
Q Consensus 240 g~i~i~d~~~~~~~~~~~~~~~~~~-~~--~~---~~~v~~~~~~~--~~~l~s~~~d 289 (451)
+...+|........ ++.+.. +. ++ ...+..|+++| .+.++.+...
T Consensus 101 ~~~~l~~S~DgG~T-----W~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 101 NMGAILRSTDRGET-----WEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CCCEEEEESSSSSS-----CEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred CCccEEEeCCCCCC-----cccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 12445544433221 222211 00 00 11346788988 4667666633
No 428
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=25.01 E-value=2.1e+02 Score=27.70 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=36.9
Q ss_pred CEEEEEeCCCcEEEEEc-cCCCCCCCCCCceeeee--eccCCcceeEEEEec-CCEEEEEcCCCcEEE
Q 012996 231 HVFYAGSRDGSIYIAAL-NAESPSTSSYGMHIIGS--LSDHSKAVTCLAYST-GDLLISGSEDGMVRV 294 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~l~s~~~dg~i~i 294 (451)
..++.|+.+|.|.-.-. ..... .......+.. ......+|..|.+++ ..+|.+++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~--~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETW--HDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC--------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCc--cccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 46788999998764322 22110 0000011211 223567899999999 899999998886665
No 429
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.00 E-value=1.5e+02 Score=26.51 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=27.4
Q ss_pred HHHHHHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 385 IENHIKELQQQGSSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEFC 433 (451)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 433 (451)
++..+.++++. ....+.++++++++++++.+.+.+...+-++||...
T Consensus 8 ~~~~~~~l~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 8 LKEKIAALKEK--IAALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444422 234455666677777777777766666666777663
No 430
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.29 E-value=1.3e+02 Score=18.41 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
.+.++|..+...+...+..++.....|-
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 431
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=23.96 E-value=74 Score=15.53 Aligned_cols=8 Identities=25% Similarity=0.592 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 012996 407 RLKRECNR 414 (451)
Q Consensus 407 ~l~~~~~~ 414 (451)
+|+++..+
T Consensus 5 qlekevaq 12 (33)
T 1fmh_A 5 QLEKEVAQ 12 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 432
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.84 E-value=1.3e+02 Score=19.47 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 402 EMEVERLKRECNRTLQMVQQWKKMYENL 429 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l 429 (451)
+.+.+.|..+...+...+.+++.....|
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554444443
No 433
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.61 E-value=1.7e+02 Score=19.69 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=26.7
Q ss_pred hhHHHHHHHhhhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 383 RTIENHIKELQQQG--SSAATEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 383 ~~~~~~~~~l~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
.+++..+.+++..- .....+..+..++.++.++++..+.+...+..+++.
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 73 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDV 73 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666555321 112234445556666666666666665566655544
No 434
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=23.21 E-value=1.7e+02 Score=19.37 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 406 ERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 406 ~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
..|+++.+++....++++..+.+|.+.
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~r 81 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666655
No 435
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=23.00 E-value=3.9e+02 Score=23.59 Aligned_cols=244 Identities=11% Similarity=0.032 Sum_probs=117.1
Q ss_pred CCCeeEEEECCCCcEEEEeccCCCEEEEEcCCCcce-------------eeeccccCCeeEEEEccCCcEEEEeeCCCcE
Q 012996 80 AEPIKPIAANSHGTYIAGGGQSGDIYMWEVASGRLL-------------KKWHAHYRAVTCLVFSEDGSFLISGSEDGCV 146 (451)
Q Consensus 80 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 146 (451)
...|..|+... .+.+.-..||.|+.|-....-.+ ..+ .-...|..++.. ..+.+.-..||.|
T Consensus 58 ~~~i~~va~G~--~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v-~l~~~i~~va~G--~~hs~alt~~G~v 132 (413)
T 1a12_A 58 PEDVVQAEAGG--MHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKV-ELQEKVVQVSAG--DSHTAALTDDGRV 132 (413)
T ss_dssp SSCEEEEEECS--SEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEEC-CCCSCEEEEEEC--SSEEEEEETTSCE
T ss_pred CCCeEEEEeCC--CeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEe-cCCCcEEEEecC--CCeEEEEcCCCcE
Confidence 35666776653 33444467899999976432111 001 112356555554 4455666788999
Q ss_pred EEeeC--cchhhhhhh--hcccccceecccCCcCceeEEEEeecCCeeEEEEeeCCCcEEEEEcCCC-cee---------
Q 012996 147 RIWSL--LTVFEECES--QRASHLYLHSFTGHTLRITDIVIGYGGVSATIVSASEDRTCKVWSLLKG-RLL--------- 212 (451)
Q Consensus 147 ~vwd~--~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~--------- 212 (451)
..|-. ......... ......+... .....|..++... ...+.-..+|.|+.|-.... ++-
T Consensus 133 ~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~----~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~ 206 (413)
T 1a12_A 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGN----DHLVMLTADGDLYTLGCGEQGQLGRVPELFANR 206 (413)
T ss_dssp EEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECS----SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSS
T ss_pred EEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecC----ceEEEEcCCCCEEEeeCCCCCccCCCccccccc
Confidence 99975 110000000 0000001111 1233565555432 45566678999999965431 110
Q ss_pred ------------eeee-------cccceeEEEECCCCCEEEEEeCCCcEEEEEccCCCCCCCC-----CCceeeeeeccC
Q 012996 213 ------------RNIV-------FPSVIDAIALDPAEHVFYAGSRDGSIYIAALNAESPSTSS-----YGMHIIGSLSDH 268 (451)
Q Consensus 213 ------------~~~~-------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~ 268 (451)
..+. ....|..++... ...++-..+|.|+.|-.......... ..+..+..+...
T Consensus 207 ~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~ 284 (413)
T 1a12_A 207 GGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS 284 (413)
T ss_dssp CGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT
T ss_pred cccccccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCC
Confidence 0011 112344444432 33444568899999987653221110 001111112211
Q ss_pred CcceeEEEEecCCEEEEEcCCCcEEEEeCCCC-c-----------eEEEeecCCCCeeEEEEEecCceeeeccCCCCccc
Q 012996 269 SKAVTCLAYSTGDLLISGSEDGMVRVWDPITH-N-----------IVRMFRLAKGPVNNILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 269 ~~~v~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~-----------~~~~~~~~~~~v~~l~~s~~~~~l~~~s~d~~i~i 336 (451)
...|..++-. ..+.+.-..||.|..|-.... + ....+.. ...|..++... .+.+.-..||.+..
T Consensus 285 ~~~v~~ia~G-~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~-l~~v~~v~~G~--~hs~alt~~G~v~~ 360 (413)
T 1a12_A 285 TKSWVGFSGG-QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISR-LPAVSSVACGA--SVGYAVTKDGRVFA 360 (413)
T ss_dssp TCCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCS-SSSEEEEEECS--SEEEEEETTSCEEE
T ss_pred CceEEEEecc-cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecc-cCceeEEEECc--ceEEEEeCCCCEEE
Confidence 1335555543 455555668999999964321 0 1111211 12555555443 23344456888888
Q ss_pred cccC
Q 012996 337 SRRH 340 (451)
Q Consensus 337 w~~~ 340 (451)
|-..
T Consensus 361 wG~n 364 (413)
T 1a12_A 361 WGMG 364 (413)
T ss_dssp EECC
T ss_pred ecCC
Confidence 8654
No 436
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=22.82 E-value=1.9e+02 Score=22.14 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWKKMYENL 429 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~l 429 (451)
.++.+|.+++++.+++.++++..+.+.
T Consensus 98 reiarllekiqkyfQ~IEtlK~ql~nf 124 (294)
T 3caz_A 98 REIARLLEKIQKYRQEIEEIKKEYKET 124 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777777777777777777666544
No 437
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=22.78 E-value=1.6e+02 Score=18.83 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 407 RLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
.++.++.++++..+.+...++.|+
T Consensus 16 ~lE~eL~~~r~e~~~ql~EYq~Ll 39 (74)
T 2xv5_A 16 EKEREMAEMRARMQQQLDEYQELL 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333
No 438
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.75 E-value=2.3e+02 Score=22.11 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012996 402 EMEVERLKRECNRTLQM 418 (451)
Q Consensus 402 ~~~~~~l~~~~~~~~~~ 418 (451)
++++..++++.+++++.
T Consensus 128 ~eEi~~LkeEn~eLkeL 144 (209)
T 2wvr_A 128 DNEIARLKKENKELAEV 144 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 439
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.59 E-value=1.6e+02 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 406 ERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 406 ~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
..|+++.+++.+..++++..+..|.+.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666554
No 440
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=22.21 E-value=2e+02 Score=19.85 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=13.0
Q ss_pred eEEEECCCCcEEEEeccCCCEEEEE
Q 012996 84 KPIAANSHGTYIAGGGQSGDIYMWE 108 (451)
Q Consensus 84 ~~~~~~~~~~~l~~~~~dg~i~iwd 108 (451)
..+.+..+|++++.. .++...+|.
T Consensus 52 ~~l~l~~dGNLVl~~-~~~~~~vW~ 75 (111)
T 3mez_A 52 CTLRLNNRGQLEIHS-ANSNTPVWV 75 (111)
T ss_dssp CEEEECTTSCEEEEC-SSCSSCSEE
T ss_pred EEEEEcCCCcEEEEe-CCCCEEEEE
Confidence 345666677766653 233334664
No 441
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=21.94 E-value=2.5e+02 Score=27.22 Aligned_cols=67 Identities=10% Similarity=-0.025 Sum_probs=44.4
Q ss_pred eeEEEEeecCCeeEEEEeeCCCcEEEEEcCC-C---ceeeeee---cccce-eEEEECCCCCEEEEEeCCCcEEE
Q 012996 178 ITDIVIGYGGVSATIVSASEDRTCKVWSLLK-G---RLLRNIV---FPSVI-DAIALDPAEHVFYAGSRDGSIYI 244 (451)
Q Consensus 178 i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~~-~---~~~~~~~---~~~~i-~~~~~~~~~~~l~~~~~dg~i~i 244 (451)
.+.++....+.-..++.|+.+|.|.-.-+.. . ..+..+. .+.+| ..+.++++...|++++..+.+++
T Consensus 401 lT~VaV~~~~~~tVlFLGT~~G~l~Kv~~~~~~~~~~~~ee~~v~~~~~pI~~~l~l~~~~~~Lyv~s~~~V~qv 475 (681)
T 3oky_A 401 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 475 (681)
T ss_dssp BCCCEEEEETTEEEEEEEBTTSEEEEEECCCTTTCCEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEEEecCceEEEEEECCCceEEEEEECCCCCceEEEEEeeeccCCCceeeeeEEcCCCCEEEEEecCEEEEE
Confidence 4455555544447788899999887544432 1 1233332 34566 68999999999999988877666
No 442
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.74 E-value=1.4e+02 Score=17.97 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWKKMYENLH 430 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 430 (451)
.+.+.+..+...+...++.++.....|.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 443
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=21.44 E-value=3.9e+02 Score=25.17 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=44.7
Q ss_pred ceeEEEEec--C-----CEEEEEcCCCcEE-EEeCCC-------CceEEEeec-----------CCCCeeEEEEEecCce
Q 012996 271 AVTCLAYST--G-----DLLISGSEDGMVR-VWDPIT-------HNIVRMFRL-----------AKGPVNNILVVRRPLY 324 (451)
Q Consensus 271 ~v~~~~~~~--~-----~~l~s~~~dg~i~-iwd~~~-------~~~~~~~~~-----------~~~~v~~l~~s~~~~~ 324 (451)
..+.|+... + ..++.|+.+|.|. +..... ...+.++.. ...+|..|.++++...
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~ 483 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGS 483 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTE
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCE
Confidence 457887775 2 4778899999874 433221 112333332 1458999999999999
Q ss_pred eeeccCCCCcccc
Q 012996 325 LNLGSFSNPHTSS 337 (451)
Q Consensus 325 l~~~s~d~~i~iw 337 (451)
|..++.++.+++-
T Consensus 484 LYV~s~~~V~qVP 496 (565)
T 3oky_B 484 LYVAFSTCVIKVP 496 (565)
T ss_dssp EEEECSSCEEEEE
T ss_pred EEEEecCeEEEee
Confidence 9999888877654
No 444
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=21.40 E-value=3e+02 Score=26.12 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred CEEEEEeCCCcEEEEEccCCCCCCCCCCceeeeeec--cCCcceeEEEEec-CCEEEEEcCCCcEEEE
Q 012996 231 HVFYAGSRDGSIYIAALNAESPSTSSYGMHIIGSLS--DHSKAVTCLAYST-GDLLISGSEDGMVRVW 295 (451)
Q Consensus 231 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~l~s~~~dg~i~iw 295 (451)
..++.|+.+|.|.-.-......... ...+..+. ....+|..|.+++ ...|..++.++.++|-
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~---~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qVP 445 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSF---AFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQVP 445 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCC---CEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcce---eEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEcc
Confidence 4678899999887554432211000 11122221 3457899999999 8899999888776664
No 445
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=21.35 E-value=2.7e+02 Score=25.66 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=42.0
Q ss_pred CeeEEEECC----CCc--EEEEeccCCCEEEEEcC-CCc-------ceeeec--cccCCeeEEEEccCCcEEEEeeCCCc
Q 012996 82 PIKPIAANS----HGT--YIAGGGQSGDIYMWEVA-SGR-------LLKKWH--AHYRAVTCLVFSEDGSFLISGSEDGC 145 (451)
Q Consensus 82 ~v~~~~~~~----~~~--~l~~~~~dg~i~iwd~~-~~~-------~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~ 145 (451)
..++|+... +++ .+..|+.+|.|.=.-+. .+. .+..+. ....+|..+.++++..+|+.++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 456666542 243 46788889986543332 211 222332 23578999999999999999998876
Q ss_pred EEE
Q 012996 146 VRI 148 (451)
Q Consensus 146 i~v 148 (451)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 446
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.20 E-value=99 Score=15.96 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012996 403 MEVERLKRECNRTLQMVQQWK 423 (451)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~~~ 423 (451)
.++++|..+...+.+.+..++
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444444444443
No 447
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=20.96 E-value=1e+02 Score=28.88 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=44.0
Q ss_pred ceeEEEEec---CCEEEEEcCCCcEEEEeCCCC----ceEEEeec--CCCCee-EEEEEecCceeeeccCCCCccc
Q 012996 271 AVTCLAYST---GDLLISGSEDGMVRVWDPITH----NIVRMFRL--AKGPVN-NILVVRRPLYLNLGSFSNPHTS 336 (451)
Q Consensus 271 ~v~~~~~~~---~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~--~~~~v~-~l~~s~~~~~l~~~s~d~~i~i 336 (451)
..++|+... ...+..|..+|.|.-..+... ..+.++.. ...+|. .|.+++++.+|..++..+.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 466666665 346778889998654444322 23334432 245885 9999999999999988776655
No 448
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.36 E-value=1.9e+02 Score=18.93 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 400 ATEMEVERLKRECNRTLQMVQQWKKMYENLHEF 432 (451)
Q Consensus 400 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 432 (451)
..+.++.+|+-++++..-.++++++...+++..
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666655
No 449
>2lh0_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; NMR {Saccharomyces cerevisiae}
Probab=20.09 E-value=1.6e+02 Score=18.51 Aligned_cols=29 Identities=17% Similarity=0.432 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012996 406 ERLKRECNRTLQMVQQWKKMYENLHEFCV 434 (451)
Q Consensus 406 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 434 (451)
.+|+++...+-+...+-...++++++...
T Consensus 14 ~~Lq~kV~aIV~~~PsSl~VF~~Ly~y~~ 42 (70)
T 2lh0_A 14 ESLSRKIGTVVRVLPSSLEIFEELYKYAL 42 (70)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHh
Confidence 56777888888888888888999998843
No 450
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=20.07 E-value=5e+02 Score=23.70 Aligned_cols=68 Identities=12% Similarity=-0.004 Sum_probs=40.9
Q ss_pred ceeEEEEeecCCeeEEEEeeCCCcEEEEEcC-CCc-----eeeeeeccccee-EEEECC-CCCEEEEEeCCCcEEE
Q 012996 177 RITDIVIGYGGVSATIVSASEDRTCKVWSLL-KGR-----LLRNIVFPSVID-AIALDP-AEHVFYAGSRDGSIYI 244 (451)
Q Consensus 177 ~i~~i~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~-----~~~~~~~~~~i~-~~~~~~-~~~~l~~~~~dg~i~i 244 (451)
.+++++.........++.|+.+|.|.---+. ... .+..+..+.+|. .+.++| ++..|++++..+.+++
T Consensus 341 ~LTsVav~vv~~~TVlFLGTd~G~L~KVvv~~~~~~~~~~~~~ei~ee~~V~~~L~ldp~~~~~LyV~s~~~V~qV 416 (476)
T 3nvn_B 341 DLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVRRI 416 (476)
T ss_dssp SEEEEEEEESSSSEEEEEEETTSEEEEEECCTTSCCCCCEEEEECTTCCCBCSCCEECSSCTTEEEEEETTEEEEE
T ss_pred CCceEEEEEeCCeEEEEEECCCceEEEEEecCCCCccceeEEEeecCCCccccccccCccccceEEEecCcEEEEE
Confidence 3666666655544778889999987633322 221 111222344555 677887 5778888887765554
Done!