Query 012997
Match_columns 451
No_of_seqs 198 out of 415
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:28:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.6 1.4E-15 3.1E-20 130.9 6.9 53 363-415 34-90 (102)
2 PF00612 IQ: IQ calmodulin-bin 96.0 0.0064 1.4E-07 38.0 2.6 18 13-30 2-19 (21)
3 smart00015 IQ Short calmodulin 94.5 0.035 7.5E-07 36.4 2.5 20 12-31 3-22 (26)
4 KOG0160 Myosin class V heavy c 92.3 0.22 4.8E-06 57.3 5.8 51 1-55 684-735 (862)
5 KOG0160 Myosin class V heavy c 87.6 1.1 2.4E-05 51.8 6.5 52 1-55 707-758 (862)
6 KOG0520 Uncharacterized conser 73.4 1.8 4E-05 50.5 1.8 58 1-58 821-886 (975)
7 COG5022 Myosin heavy chain [Cy 73.4 5.3 0.00012 48.4 5.5 39 13-51 746-784 (1463)
8 KOG2128 Ras GTPase-activating 56.7 15 0.00034 44.5 5.1 46 10-55 590-639 (1401)
9 KOG2128 Ras GTPase-activating 55.6 20 0.00042 43.7 5.7 54 1-57 546-611 (1401)
10 KOG0161 Myosin class II heavy 54.4 19 0.00041 45.5 5.5 39 14-52 775-813 (1930)
11 KOG0163 Myosin class VI heavy 41.8 37 0.00081 39.4 4.9 37 8-48 810-846 (1259)
12 KOG0942 E3 ubiquitin protein l 39.7 34 0.00073 40.2 4.2 28 10-37 27-54 (1001)
13 COG5261 IQG1 Protein involved 36.0 31 0.00068 40.3 3.2 55 10-64 404-484 (1054)
14 TIGR03493 cellullose_BcsF cell 33.4 29 0.00062 28.0 1.7 17 2-18 21-37 (62)
15 KOG0377 Protein serine/threoni 27.5 1.1E+02 0.0023 33.8 5.2 42 5-50 10-51 (631)
16 KOG0164 Myosin class I heavy c 22.4 1.5E+02 0.0032 34.6 5.4 39 13-55 697-735 (1001)
17 PF09277 Erythro-docking: Eryt 21.6 1E+02 0.0023 24.3 2.8 25 7-31 17-48 (58)
18 KOG4427 E3 ubiquitin protein l 21.4 1E+02 0.0022 36.0 4.0 26 10-35 28-53 (1096)
19 KOG0164 Myosin class I heavy c 20.9 2.2E+02 0.0047 33.3 6.3 45 1-55 707-751 (1001)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.60 E-value=1.4e-15 Score=130.93 Aligned_cols=53 Identities=51% Similarity=0.676 Sum_probs=43.4
Q ss_pred CCCCcccchhHHHhhhcCCCCccCCCcc---CcCCCcccccCCCCCC-CCCCCCCCC
Q 012997 363 VPSYMAPTESAKAKLRGQGSPRLAHDGI---DKNGTTRRHSLPSSTS-SKLSSLSPR 415 (451)
Q Consensus 363 ~P~yMa~TeSakAk~r~~~spr~~~~~~---~~~~~~~r~sl~~~~~-g~~~s~sp~ 415 (451)
+|+|||+|||||||+|+||+||||++.. +....++|+|||...+ +..++.+++
T Consensus 34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~ 90 (102)
T PF13178_consen 34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPR 90 (102)
T ss_pred CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCc
Confidence 9999999999999999999999999875 4456789999997554 445555554
No 2
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.02 E-value=0.0064 Score=38.01 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=16.4
Q ss_pred hhhHHHHHHhhhHHHHHH
Q 012997 13 KGIIRLQAVIRGHLVRRQ 30 (451)
Q Consensus 13 KglVRLQAlvRGhlVRRQ 30 (451)
+++|.||+.+|||++|++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 578999999999999995
No 3
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.50 E-value=0.035 Score=36.36 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.3
Q ss_pred hhhhHHHHHHhhhHHHHHHH
Q 012997 12 LKGIIRLQAVIRGHLVRRQA 31 (451)
Q Consensus 12 LKglVRLQAlvRGhlVRRQA 31 (451)
.+.++.|||.+|||++|++.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999953
No 4
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=92.27 E-value=0.22 Score=57.32 Aligned_cols=51 Identities=31% Similarity=0.285 Sum_probs=30.8
Q ss_pred ChhhHHHHHHHh-hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012997 1 MALKARRAFRTL-KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRY 55 (451)
Q Consensus 1 rgyLARRalraL-KglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgrrVR~ 55 (451)
|||++|+.|-.+ ++++-+||.+||+++|+ .++ .-.+-+.+|..+|++..|.
T Consensus 684 r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~---~~~-~~~aai~~q~~~r~~~~r~ 735 (862)
T KOG0160|consen 684 RGYLARKKFLQLRSAVIIIQAYSRGVLARR---ETE-REAAAIGIQKECRSYLNRR 735 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---hhH-HHHHHHHhHHHHHHHHHHH
Confidence 678888886554 45777888888888887 222 3334444555555544444
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=87.61 E-value=1.1 Score=51.77 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=43.6
Q ss_pred ChhhHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012997 1 MALKARRAFRTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRY 55 (451)
Q Consensus 1 rgyLARRalraLKglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgrrVR~ 55 (451)
|||+||+.--.-.+.+.+|..+|+|+.||++.... .+++-+|+-+|+..+|.
T Consensus 707 rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 707 RGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAMLARN 758 (862)
T ss_pred hHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcc
Confidence 79999982224577899999999999999766554 67889999999999998
No 6
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=73.40 E-value=1.8 Score=50.46 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=42.7
Q ss_pred ChhhHHHHHHHhhh-hHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhccc
Q 012997 1 MALKARRAFRTLKG-IIRLQAVIRGHLVRRQAVITLR-------CLLGIVKFQALARGRRVRYSDI 58 (451)
Q Consensus 1 rgyLARRalraLKg-lVRLQAlvRGhlVRRQAa~TLr-------cmqaiVRvQA~IRgrrVR~s~e 58 (451)
|||+.|+-|--++- +|++||.||||.||+|...-.. .+-.+=++|+-.||-+.|...+
T Consensus 821 ~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 821 RGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred hhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 68999999887776 9999999999999997654332 2344566677777777666544
No 7
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=73.36 E-value=5.3 Score=48.44 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=30.4
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012997 13 KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGR 51 (451)
Q Consensus 13 KglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgr 51 (451)
.-+++||++|||+++||+...+++.|++|..+|.-.+.+
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~ 784 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLR 784 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Confidence 568999999999999999888887777766555544443
No 8
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=56.72 E-value=15 Score=44.51 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=31.7
Q ss_pred HHhhhhHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhh
Q 012997 10 RTLKGIIRLQAVIRGHLVRRQAVITL----RCLLGIVKFQALARGRRVRY 55 (451)
Q Consensus 10 raLKglVRLQAlvRGhlVRRQAa~TL----rcmqaiVRvQA~IRgrrVR~ 55 (451)
-+++-+|.+|+++||+++|+-..--+ .||-.++.+|+-+|+.+-|-
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 35566777777788877777554433 67777888888777766554
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=55.64 E-value=20 Score=43.68 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHhhhh--------HHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhcc
Q 012997 1 MALKARRAFRTLKGI--------IRLQAVIRGHLVRRQAVITL----RCLLGIVKFQALARGRRVRYSD 57 (451)
Q Consensus 1 rgyLARRalraLKgl--------VRLQAlvRGhlVRRQAa~TL----rcmqaiVRvQA~IRgrrVR~s~ 57 (451)
|||.-|-+|++.... +-+||++||+++ -+..+ -...-+|.+|+..|+..+|-..
T Consensus 546 rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~ 611 (1401)
T KOG2128|consen 546 RGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKY 611 (1401)
T ss_pred cccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhH
Confidence 788888888876654 459999999996 22121 2235699999999999998753
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=54.38 E-value=19 Score=45.54 Aligned_cols=39 Identities=33% Similarity=0.246 Sum_probs=33.9
Q ss_pred hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012997 14 GIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRR 52 (451)
Q Consensus 14 glVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgrr 52 (451)
=|+.+||.||||++|+-..--+.-+.+|.=+|.-||+..
T Consensus 775 ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 775 IITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999977777788889999998888874
No 11
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=41.83 E-value=37 Score=39.35 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=27.7
Q ss_pred HHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012997 8 AFRTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALA 48 (451)
Q Consensus 8 alraLKglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~I 48 (451)
.+|+ ..++++|+++||||+|++-- ..+.+|.++=|+.
T Consensus 810 ~yRa-e~v~k~Q~~~Rg~L~rkr~~---~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 810 IYRA-ECVLKAQRIARGYLARKRHR---PRIAGIRKINALL 846 (1259)
T ss_pred HHHH-HHHHHHHHHHHHHHHHhhhc---hHHHHHHHHHHHH
Confidence 3444 78999999999999999532 4567777776664
No 12
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.71 E-value=34 Score=40.20 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.2
Q ss_pred HHhhhhHHHHHHhhhHHHHHHHHHHHHH
Q 012997 10 RTLKGIIRLQAVIRGHLVRRQAVITLRC 37 (451)
Q Consensus 10 raLKglVRLQAlvRGhlVRRQAa~TLrc 37 (451)
+++||.|.+|.+.|||.||++--..+|.
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~~R~ 54 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLLFRE 54 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999987666654
No 13
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=36.04 E-value=31 Score=40.29 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=42.7
Q ss_pred HHhhhhHHHHHHhhhHHHHH---------HHHHHHHHHHHHHH--------HHHHHHHHhh---------hhccccchhh
Q 012997 10 RTLKGIIRLQAVIRGHLVRR---------QAVITLRCLLGIVK--------FQALARGRRV---------RYSDIGIQVQ 63 (451)
Q Consensus 10 raLKglVRLQAlvRGhlVRR---------QAa~TLrcmqaiVR--------vQA~IRgrrV---------R~s~eg~~~q 63 (451)
-+|-.|++||.|.||+.-|+ |--.++--.|+++| +|+++||-.+ |.+.++.++.
T Consensus 404 d~llni~klq~L~nG~~iRkl~~l~~s~~~~hlsv~~~q~L~R~evE~~sl~qsl~rG~l~~hrnm~nyfR~sqg~~Alr 483 (1054)
T COG5261 404 DALLNIVKLQILGNGYEIRKLYSLGKSNCEEHLSVSLFQMLLRTEVEATSLVQSLLRGNLPVHRNMTNYFRRSQGQAALR 483 (1054)
T ss_pred HHHHHHHHHHHhhcceeeeeeecccccchhHHHHHHHHHHHHHHHhhccHHHHHHHhccchHHHHHHHHHHhCcchhHHH
Confidence 36778999999999999993 34456667799998 8999999887 5566665654
Q ss_pred h
Q 012997 64 K 64 (451)
Q Consensus 64 ~ 64 (451)
.
T Consensus 484 e 484 (1054)
T COG5261 484 E 484 (1054)
T ss_pred H
Confidence 4
No 14
>TIGR03493 cellullose_BcsF celllulose biosynthesis operon protein BcsF/YhjT. Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process. Members average about 63 amino acids in length and are not uncharacterized. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=33.38 E-value=29 Score=27.97 Aligned_cols=17 Identities=35% Similarity=0.649 Sum_probs=14.3
Q ss_pred hhhHHHHHHHhhhhHHH
Q 012997 2 ALKARRAFRTLKGIIRL 18 (451)
Q Consensus 2 gyLARRalraLKglVRL 18 (451)
||||||-+++++...|+
T Consensus 21 gyl~~r~~~r~r~~~r~ 37 (62)
T TIGR03493 21 GYLARRSLRRIRTTLRL 37 (62)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 89999999998887654
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=27.51 E-value=1.1e+02 Score=33.81 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012997 5 ARRAFRTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARG 50 (451)
Q Consensus 5 ARRalraLKglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRg 50 (451)
-+++-||+|+.+-+|-..|+|.+|. ..|.=-+|-=+|++-.|
T Consensus 10 ~~~s~raikaAilIQkWYRr~~ARl----e~rrr~twqIFqslEYA 51 (631)
T KOG0377|consen 10 LKKSTRAIKAAILIQKWYRRYEARL----EARRRCTWQIFQSLEYA 51 (631)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHhHHhhc
Confidence 4788899999999999999999998 44333344445665544
No 16
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=22.42 E-value=1.5e+02 Score=34.59 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=24.9
Q ss_pred hhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012997 13 KGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRY 55 (451)
Q Consensus 13 KglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgrrVR~ 55 (451)
-=++-||.++||.++|. -++.|++...+=---|...++-
T Consensus 697 ~lvtllQK~~RG~~~R~----ry~rmka~~~ii~wyR~~K~ks 735 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQ----RYRRMKASATIIRWYRRYKLKS 735 (1001)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999998 6777766433222344444443
No 17
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=21.55 E-value=1e+02 Score=24.28 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=19.7
Q ss_pred HHHHHhhhh-------HHHHHHhhhHHHHHHH
Q 012997 7 RAFRTLKGI-------IRLQAVIRGHLVRRQA 31 (451)
Q Consensus 7 RalraLKgl-------VRLQAlvRGhlVRRQA 31 (451)
+||-+|... .||-||.||..-||-.
T Consensus 17 ~aL~aLpd~dGH~~V~aRLeaLLR~Wq~~r~~ 48 (58)
T PF09277_consen 17 AALLALPDEDGHARVTARLEALLRRWQDRRAP 48 (58)
T ss_dssp HHHHHHTTSS-THHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhcCCccccccHHHHHHHHHHHHHHhccCC
Confidence 677777765 7999999999988843
No 18
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=1e+02 Score=35.95 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=21.0
Q ss_pred HHhhhhHHHHHHhhhHHHHHHHHHHH
Q 012997 10 RTLKGIIRLQAVIRGHLVRRQAVITL 35 (451)
Q Consensus 10 raLKglVRLQAlvRGhlVRRQAa~TL 35 (451)
|+-.+.+.||+.+|||+||+.+..-.
T Consensus 28 rr~~aa~~iq~~lrsyl~Rkk~~~~I 53 (1096)
T KOG4427|consen 28 RREAAALFIQRVLRSYLVRKKAQIEI 53 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566899999999999999876544
No 19
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.89 E-value=2.2e+02 Score=33.31 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=32.7
Q ss_pred ChhhHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012997 1 MALKARRAFRTLKGIIRLQAVIRGHLVRRQAVITLRCLLGIVKFQALARGRRVRY 55 (451)
Q Consensus 1 rgyLARRalraLKglVRLQAlvRGhlVRRQAa~TLrcmqaiVRvQA~IRgrrVR~ 55 (451)
||++||.-++.||++..+=-.+|-|-+|- .+--+|.++||-+.++
T Consensus 707 RG~~~R~ry~rmka~~~ii~wyR~~K~ks----------~v~el~~~~rg~k~~r 751 (1001)
T KOG0164|consen 707 RGWLARQRYRRMKASATIIRWYRRYKLKS----------YVQELQRRFRGAKQMR 751 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhhcc
Confidence 89999999999999766655888554443 3455677888865544
Done!