BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012998
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/346 (32%), Positives = 169/346 (48%), Gaps = 17/346 (4%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLD- 165
L D R T++V G +R +R LD LI L ++ P L +I+++G Y++ LD
Sbjct: 35 LSPPDRRFCTELVYGVVRRQRTLDCLIEQL--GDRPIGKQPPDLRRIVQLGLYQLRYLDQ 92
Query: 166 MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDN--NSLPLPKLEGNDRAQARAL 223
+P A V+ V LAK G +VNG+LR+ ++ N L K+ +L
Sbjct: 93 VPASAAVNTGVDLAKANGLKGLSKVVNGMLRRYQRAEEQGKNILDQEKI---------SL 143
Query: 224 ATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
YS P W++ + + G+ E L + N +PS LR N K +R ++ L L +
Sbjct: 144 GEQYSFPDWLMELFEQTWGKAETESLCAYFNQNPSLDLRINPLK-TSRVEVAQSLAELNL 202
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
L + +R+ + Q EG VQD SA V +++PQP ++I D CAA
Sbjct: 203 TTTAMAGLPQGLRLGGKTGAITQLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAA 262
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++A + QG +YA D + RL+ L T + + S I+ DL V
Sbjct: 263 PGGKTTHIAELMGDQGQIYAGDRHGWRLQKLAVTQQRLGLTS-IKIWEGDLTQPGVKPPV 321
Query: 404 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D+ LLD PCSGLG L + DLRW + + L LQ LL A
Sbjct: 322 ELVDRALLDVPCSGLGTLHRNPDLRWRQTPATIATLLPLQQALLKA 367
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 188/347 (54%), Gaps = 16/347 (4%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
++ +L D++ L+T++V GT++ + LD+++ + + ++P ++Q+LR+ Y++
Sbjct: 32 IKSNELSDQNRGLLTELVYGTLQNKIALDYMLKPFINKPQ---KVKPWVIQLLRLSLYQM 88
Query: 162 VKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQA 220
L+ +P A + E V +AK+ G + VNG+LR + +P + +
Sbjct: 89 EYLEKIPDRAAIHEAVEIAKIRGHKGIASFVNGVLRSI------QREGVPSFDAIEDP-V 141
Query: 221 RALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNL 280
R LAT SHP W+V+ W G E A K+ + P +LR N K RA+L+ Q+
Sbjct: 142 RRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLRVNQMKA-DRAELLDQMAA 200
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
+ E ++ +++ G + + G ++QDES+ LV +DP+ ++++D
Sbjct: 201 EGIEVEKGDLAEDAVKLLKG--TIAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDA 258
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400
CAAPGGK+ ++A + +G V ++D++K +++++ E A + ++I D R +
Sbjct: 259 CAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLGL-TIIHAETMDARKAGET 317
Query: 401 -STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 446
+ D++L+DAPCSG GV+ ++ D+++ ++ +D L +Q +L
Sbjct: 318 FENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQLSIL 364
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 180/351 (51%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R+ +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RQHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|A8GKG7|RSMB_SERP5 Ribosomal RNA small subunit methyltransferase B OS=Serratia
proteamaculans (strain 568) GN=rsmB PE=3 SV=1
Length = 429
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 106/346 (30%), Positives = 171/346 (49%), Gaps = 22/346 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L K + + L +L +G Y+++
Sbjct: 34 KTISDKDRALLQELCFGTLRVLPQLEWCIQQLM--AKPMTGKQRTLHYLLMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +AV+ E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPAHAVLAETVEGAVALKRPQLKGLINGVLRQF---QRQQEELLQRAANND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKV 283
+ Y HP W+++R + Y Q E I + NN P LR N R TR D + + +
Sbjct: 141 SRYLHPSWLLKRIQQAYPAQWEQI--IDANNQKPPMWLRVN-RLHHTREDYLQLMEQAGI 197
Query: 284 PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAA 343
E + +R+ G +G VQD SA V ++DPQ G+ I+D CAA
Sbjct: 198 AAEPHAEYRDAVRLLAPCAVTDLPGF-ADGWVTVQDASAQGCVDLLDPQDGEQILDLCAA 256
Query: 344 PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
PGGKT ++ + + V A+DI++ RL+ + E + ++++ ++ D RT
Sbjct: 257 PGGKTTHILEA-APKAHVMAVDIDEQRLKRVKENLQRLRLHAEVK--QGDGRTPQQWCGD 313
Query: 404 K-CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 314 KQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAALQAEIIEA 359
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (333), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/351 (30%), Positives = 179/351 (50%), Gaps = 32/351 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KNISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATVLKRPQLKGLINGVLRQF---QRQQVELLERAVNND-------- 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
+ Y HP W++ R + Y Q + I + NN P LR N R +R++ L+ Q ++
Sbjct: 141 SHYLHPSWLLARIKQAYPAQWQQI--LDANNQRPPMWLRVN-RLHHSRSEYLELLTQADI 197
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH + + +R+ T V + G VQD SA V ++DPQ G+ I+D
Sbjct: 198 NAEPHPI---YRDAVRLITPC-AVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDL 253
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR---TF 397
CAAPGGKT ++ + + V A+DI++ RL + E + Q+ +V+R D R T+
Sbjct: 254 CAAPGGKTTHILEA-APKAHVLAVDIDEQRLSRVKENLQRLQLQAVVRV--GDGRAPDTW 310
Query: 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 311 CGDQ--QFDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEIIEA 359
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 132 bits (332), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 174/347 (50%), Gaps = 24/347 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K + D+D L+ ++ GT+R L+ I L + + + + ++ +G Y+++
Sbjct: 34 KSISDKDRALLQELCFGTLRVLPQLEWCIQQLM--ARPMTGKQRVFHYLIMVGLYQLIYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L + ND
Sbjct: 92 RIPPHAALAETVEGATALKRPQLKGLINGVLRQF---QRQQVELLERAANND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRAN--SRKGVTRADLVMQLNLLK 282
+ Y HP W++ R K ++ +++ NN P LR N + +L+ Q N+
Sbjct: 141 SHYLHPSWLLAR-IKLAYPDQWQQILDANNQKPPMWLRVNRLHHSRIEYLELLKQANIEA 199
Query: 283 VPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCA 342
+PH+ + +R+ T G + G VQD SA V ++DPQ G+ I+D CA
Sbjct: 200 LPHDF---YPDAVRLITPCAVSDLPGF-ELGWVTVQDASAQGCVDLLDPQDGEQILDLCA 255
Query: 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS 401
APGGKT ++ + + V A+DI++ RL + E + ++++ +R D RT +
Sbjct: 256 APGGKTTHILEA-APKVHVLAVDIDEQRLSRVKENLQRLRLHADVRV--GDGRTPDEWCG 312
Query: 402 TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+++A
Sbjct: 313 DQQFDRILLDAPCSATGVIRRHPDIKWLRRDSDIAELAQLQSEIIEA 359
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/349 (31%), Positives = 176/349 (50%), Gaps = 28/349 (8%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L L ++AR L
Sbjct: 91 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEAL----LAEFATSEARFL- 143
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNL 280
HP W+++R K Y Q EAI + NN P LR N R +R L+ +
Sbjct: 144 ----HPSWLLKRLQKSYPTQWEAI--VEANNQRPPMWLRVN-RTHHSRDSWLTLLQDAGM 196
Query: 281 LKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340
PH S + D +R+++ G +EG VQD SA V+ + PQ G+ I+D
Sbjct: 197 NGFPH--SAYPDA-LRLESPAPVHALPGF-EEGWVTVQDASAQGCVSFLAPQNGEKILDL 252
Query: 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD- 399
CAAPGGKT ++ + + V A+D+++ RL + + K + + ++ D R A
Sbjct: 253 CAAPGGKTTHILEA-APEAQVLAVDVDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQW 309
Query: 400 NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
K D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 310 CGEQKFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQSEILDA 358
>sp|Q6D000|RSMB_ERWCT Ribosomal RNA small subunit methyltransferase B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=rsmB PE=3 SV=1
Length = 429
Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/352 (29%), Positives = 168/352 (47%), Gaps = 24/352 (6%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +D+ D+D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPIHQRDVSDKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LLQREATHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ 277
Y HP W++ R ++ ++ NN P LR N A +L+MQ
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNNWRGIVEANNQRPPMWLRVNRLHHTREAYLNLLMQ 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ PH + IR+ + V Q +G VQD SA V +DPQ G+ I
Sbjct: 195 GGIEAFPHT---EYSDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQDGEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ + + V A+D+++ RL + E Q+++ ++ D R
Sbjct: 251 LDLCAAPGGKTTHILEA-APKSHVLAVDVDETRLGRVKENLLRLQMHAEVK--QGDGRYP 307
Query: 398 ADNSTVKC-DKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+LDA
Sbjct: 308 DSWCEARVFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEILDA 359
>sp|C6DFR7|RSMB_PECCP Ribosomal RNA small subunit methyltransferase B OS=Pectobacterium
carotovorum subsp. carotovorum (strain PC1) GN=rsmB PE=3
SV=1
Length = 429
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 169/353 (47%), Gaps = 26/353 (7%)
Query: 100 LGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFY 159
L +++ ++D L+ ++ G +R L+ I L K + + L ++ +G Y
Sbjct: 29 LPVHQREVSEKDRALLQELCFGVLRVLPQLEWCIQQLM--AKPLTGKQRTLHYLIMVGIY 86
Query: 160 EIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ +PP+A + E V A RP L+NG+LR+ ++ L + E N +
Sbjct: 87 QLHYTRIPPHAALAETVEGAVALKRPQLKGLINGVLRQFQRQQEE----LIQREANHSSH 142
Query: 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRA--DLVMQ 277
Y HP W++ R ++ ++ NN P LR N A +L+ Q
Sbjct: 143 -------YLHPSWLLAR-IEHAYPNHWQTIVEANNQRPPMWLRVNRLHHTREAYLNLLAQ 194
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
+ PH + IR+ + V Q +G VQD SA V +DPQ G+ I
Sbjct: 195 EGIEAFPHT---EFTDAIRLASPC-AVDQLPGFSQGWATVQDASAQGCVYWLDPQDGEQI 250
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ + Q V A+DI++ RL + E Q+++ ++ D R +
Sbjct: 251 LDLCAAPGGKTTHILEA-APQSHVLAVDIDETRLGRVKENLLRLQMHAEVK--QGDGR-Y 306
Query: 398 ADN--STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
D+ D++LLDAPCS GV+ + D++W RR D+EEL LQ E+ DA
Sbjct: 307 PDSWCEGRMFDRILLDAPCSATGVIRRHPDIKWLRRDRDIEELVALQKEIFDA 359
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 170/354 (48%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--IEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T + G +EG VQD SA +A + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + + A+ A
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ-----------RQQEELLAEFNASD 140
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 141 ACYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + +R++T + G +EG VQD SA +A + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVRLETPAPVHVLPGF-EEGWVTVQDASAQGCMAWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp.
(strain 638) GN=rsmB PE=3 SV=1
Length = 428
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 34/352 (9%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R + LI L + + + + ++ +GFY+++
Sbjct: 33 QKVSDKDKALLQELCFGVLRTLPQQEWLISKLM--SRPMTGKQRTIHYLIMVGFYQLLHT 90
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A V RP L+NG+LR+ R Q LA
Sbjct: 91 RIPPHAALAETVEGAVVIKRPQLKGLINGVLRQF-----------------QRQQEELLA 133
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQ 277
+ HP W+++R K Y + EAI + NN P LR N R TR + +
Sbjct: 134 EFADSDKRFLHPEWLLKRLQKAYPSKWEAI--VEANNQRPPMWLRVN-RNHHTRDEWLAL 190
Query: 278 LNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSI 337
L ++ + IR+ + G ++G VQD SA + ++PQ G I
Sbjct: 191 LETAEMNGFTHDAYPDAIRLASPAPVQALPGF-EQGWVTVQDASAQGCMTYLEPQNGDHI 249
Query: 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397
+D CAAPGGKT ++ ++ + V A+D+++ RL + + K + + ++ D RT
Sbjct: 250 LDLCAAPGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKRLGMKAEVK--QGDGRTP 306
Query: 398 AD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++L+DAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 307 GEWCGDEQFDRILVDAPCSATGVIRRHPDIKWLRRDRDINELAQLQSEILDA 358
>sp|B4F1L5|RSMB_PROMH Ribosomal RNA small subunit methyltransferase B OS=Proteus
mirabilis (strain HI4320) GN=rsmB PE=3 SV=1
Length = 422
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 171/345 (49%), Gaps = 20/345 (5%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
K++ D+D L+ ++ GT+R L+ +I L +K + +L ++ +G Y+++
Sbjct: 34 KNISDKDKALLQELCFGTLRTLPQLEWIIQQLM--DKPLKGKQRILHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A + E V A +P L+NG+LR+ +D + + + + ND
Sbjct: 92 RVPAHAALAETVNGAIALKKPQLKGLINGVLRQFQRQQD---VLMERFQNND-------- 140
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
+ Y HP W++ R K E ++ NN P LR N +R + L +
Sbjct: 141 SRYLHPSWLLTR-IKNAYPELWESIIEGNNQKPPMWLRVNQIHH-SREQYLALLEKEGIS 198
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H IR++T + G EG VQD SA ++ PQ + I+D CAAP
Sbjct: 199 AFSDDHHPNAIRLETPCNVHLLPGF-NEGWVTVQDRSAQRCAELLAPQNNEQILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V AIDI++ RL + E ++++ +++ D R + +
Sbjct: 258 GGKTTHILE-IAPKAHVLAIDIDEQRLARVKENLNRLKLHATVKS--GDGRYPEQWCANM 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR ED+ +L +Q E+L A
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRNEDIAQLAQIQKEILHA 359
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L L K +D AR
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQ--RQQEEL-LAKFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + +R++T G ++G VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7NLK8|RSMB_ECO7I Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 169/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNTSDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL +++ K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVHDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 167/342 (48%), Gaps = 18/342 (5%)
Query: 107 LDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDM 166
+ D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++ +
Sbjct: 36 VSDKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTIHYLIMVGLYQLLYTRI 93
Query: 167 PPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATI 226
PP+A + E V A R L+NG+LR+ +D L + G D AR L
Sbjct: 94 PPHAALAETVEGAVAIKRMQFKGLINGVLRQFQRQQDEL---LAEFSGQD---ARWL--- 144
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
HP+W++ R+ +E + NN P LR N R+ +R + + L +
Sbjct: 145 --HPMWLLNRFQTAWPREWQAVVEA-NNERPPMWLRVN-RQHHSRDEWLKLLEENGMTGH 200
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
+ + +R+ G ++G VQD SA V ++ PQ G++I+D CAAPGG
Sbjct: 201 IHPRYPDAVRLDAPAPVSALPGF-EQGWVTVQDASAQGCVELLAPQNGETILDLCAAPGG 259
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT ++ + Q V A+D++ R+ + E K ++ + ++ + T + D
Sbjct: 260 KTTHILEA-APQASVMAVDVDAQRISRVYENLKRLKMKADVKVGDGRFPSTWCGET-QFD 317
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDSDINELAQLQSEILDA 359
>sp|Q32B61|RSMB_SHIDS Ribosomal RNA small subunit methyltransferase B OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmB PE=3 SV=1
Length = 429
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + S + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMSGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNTSDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGK 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGKQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 167/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRRQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I NN P LR N + L +
Sbjct: 135 EFNTRDARYLHPSWLLKRLQKAYPEQWQSIAEA--NNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRIYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q0TCH3|RSMB_ECOL5 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
A PGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AGPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 169/344 (49%), Gaps = 28/344 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVSIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA VA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRL-RILNETAKLHQVNSVIRTIHADLRTFADNSTV 403
GGKT ++ + + V A+D+++ RL RI + +L +V + + D
Sbjct: 258 GGKTTHILEA-APEADVLAVDVDEQRLSRIYDNLKRLGMKATVKQGDGRYPAQWCDEQ-- 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 447
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LD
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAKLQAEILD 358
>sp|B7N0S9|RSMB_ECO81 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O81 (strain ED1a) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 172/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q0T014|RSMB_SHIF8 Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmB PE=3 SV=2
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 167/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRRQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I NN P LR N + L +
Sbjct: 135 EFNTRDARYLHPSWLLKRLQKAYPEQWQSIAEA--NNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 168/354 (47%), Gaps = 38/354 (10%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM- 276
Y HP W+++R K Y Q ++I + NN P LR N + L +
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRINRTHHSRDSWLALL 192
Query: 277 -QLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQ 335
+ + PH + +R++T G ++G VQD SA + + PQ G+
Sbjct: 193 DEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNGE 248
Query: 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395
I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R
Sbjct: 249 HILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGR 305
Query: 396 TFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 306 YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|Q8FD12|RSMB_ECOL6 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmB PE=3
SV=1
Length = 429
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 171/348 (49%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R D LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQSDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ +D L + +D AR
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQRQQDEL---LAEFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++++T G +EG VQD SA + + PQ G+ I+D C
Sbjct: 199 GFPHA---DYPDAVQLETPAPVHALPGF-EEGWVTVQDASAQGCMTWLAPQNGEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 169/346 (48%), Gaps = 22/346 (6%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R L+ LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLEWLISKLM--ARPMTGKQRTVHFLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + +L E +R
Sbjct: 92 RIPPHAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQEALLAEFAEHENR------- 142
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP 284
Y HP W+++R + E+ +++ NN P LR N R +R + + LN +
Sbjct: 143 --YLHPKWLLKR-LQQAWPEQWQEIVEANNQRPPMWLRVN-RNHHSRDEWLALLNEAGLE 198
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
+ +R+ T G EG VQD SA + + P+ G+ I+D CAAP
Sbjct: 199 GFTHPDYPDAVRLATPAPVHALPGF-AEGWVTVQDASAQGCMRYLQPENGERILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--ST 402
GGKT ++ ++ Q V A+DI++ RL + + K V + ++ D R F +
Sbjct: 258 GGKTTHILE-VAPQAQVMAVDIDEQRLSRVYDNLKRLGVKAEVK--QGDGR-FPEQWCGN 313
Query: 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+L+A
Sbjct: 314 EQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILNA 359
>sp|B1LGP5|RSMB_ECOSM Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 103/355 (29%), Positives = 170/355 (47%), Gaps = 40/355 (11%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ R Q LA
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQF-----------------QRQQEELLA 134
Query: 225 TI------YSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADL 274
Y HP W+++R K Y Q ++I + NN P LR N R +R L
Sbjct: 135 EFNASDARYLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVN-RTHHSRDRWLAL 191
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + + PH + +R++T G ++G VQD SA + + PQ G
Sbjct: 192 LDEAGMKGFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNG 247
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ I+D CAAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D
Sbjct: 248 EHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDG 304
Query: 395 RTFAD-NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
R + + D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 305 RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B2U2Q6|RSMB_SHIB3 Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmB PE=3
SV=1
Length = 429
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 26/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 34 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLM--ARPMTGKQRTVHYLIMVGLYQLLYT 91
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+PP+A + E V A RP L+NG+LR+ + L L K +D AR
Sbjct: 92 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQ--RQQEEL-LAKFNASD---AR--- 142
Query: 225 TIYSHPVWMVRRWTK-YLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVM--QLNLL 281
Y HP W+++R K Y Q ++I + NN P LR N + L + + +
Sbjct: 143 --YLHPSWLLKRLQKAYPEQWQSI--VEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMK 198
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + +R++T G ++G VQD SA + + PQ + I+D C
Sbjct: 199 GFPHA---DYPDAVRLETPAPVHALPGF-EDGWVTVQDASAQGCMTWLAPQNSEHILDLC 254
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-N 400
AAPGGKT ++ ++ + V A+DI++ RL + + K + + ++ D R +
Sbjct: 255 AAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPSQWC 311
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ D++W RR D+ EL LQ E+LDA
Sbjct: 312 GEQQFDRILLDAPCSATGVIRHHPDIKWLRRDRDIPELAQLQSEILDA 359
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 169/345 (48%), Gaps = 28/345 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 359
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/345 (31%), Positives = 169/345 (48%), Gaps = 28/345 (8%)
Query: 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPP 168
D+D L+ ++ G +R L+ LI L + + + + ++ +GFY+++ +PP
Sbjct: 38 DKDKALLQELCFGVLRTLSQLEWLINKLM--SRPMTGKQRTVHYLIMVGFYQLLYTRVPP 95
Query: 169 YAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYS 228
+A + E V A RP L+NG+LR+ + +L L + +D AR L
Sbjct: 96 HAALAETVEGAVAIKRPQLKGLINGVLRQFQ--RQQETL-LNEFATSD---ARFL----- 144
Query: 229 HPVWMVRR-WTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTR---ADLVMQLNLLKVP 284
HP W+V+R Y Q + I + NN P LR N R TR L+ + P
Sbjct: 145 HPGWLVKRLQNAYPTQWQHI--IEANNQRPPMWLRVN-RTHHTRDGWLGLLEDAGMKGYP 201
Query: 285 HELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAP 344
H + +R++T G EG VQD SA + PQ G+ I+D CAAP
Sbjct: 202 HP---DYPDAVRLETPAPVHALPGF-AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAP 257
Query: 345 GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTV 403
GGKT ++ ++ + V A+DI++ RL + + K + + ++ D R A
Sbjct: 258 GGKTTHILE-VAPEADVLAVDIDEQRLSRVYDNLKRLGMKATVK--QGDGRYPAQWCGEQ 314
Query: 404 KCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQAEILDA 359
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/348 (29%), Positives = 170/348 (48%), Gaps = 25/348 (7%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + RD L+ +I G +R L+ + L K + + ++ +G Y++ +
Sbjct: 38 QQIRPRDHALLQEICYGVLRQLPRLESISQALM--GKPLKGKQRVFHFLILVGLYQLSFM 95
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALA 224
+P +A V E V A+ P L+N +LR +D EG D A
Sbjct: 96 RIPAHAAVGETVEGAQDLKGPRLRGLINAVLRNYQ--RDQ--------EGLDAQATSHDA 145
Query: 225 TIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRAD---LVMQLNLL 281
Y HP W+++ K E+ +++ NNS LR N + TRA+ L+ Q ++
Sbjct: 146 GRYGHPGWLLKL-LKESYPEQWQQIVEANNSKAPMWLRVNHQHH-TRAEYQALLEQAGIV 203
Query: 282 KVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCC 341
PH + ++ + ++T +V Q EG +VQD +A L + + PQ G+ I+DCC
Sbjct: 204 TTPHAQA---EDALCLETPC-DVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCC 259
Query: 342 AAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400
AAPGGKT ++ + + V AID ++ RL+ + E L ++ + I D R
Sbjct: 260 AAPGGKTAHILE-RTPESQVVAIDCDETRLKRVREN--LQRLELTAQVICGDARYPQQWW 316
Query: 401 STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
+ D++LLDAPCS GV+ + D++W RR +D+ L LQ E+LDA
Sbjct: 317 QGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREILDA 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,077,730
Number of Sequences: 539616
Number of extensions: 6735597
Number of successful extensions: 18283
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 17420
Number of HSP's gapped (non-prelim): 724
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)