Query 012998
Match_columns 451
No_of_seqs 409 out of 2728
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14901 16S rRNA methyltransf 100.0 7E-72 1.5E-76 582.1 39.2 366 59-451 2-372 (434)
2 PRK14903 16S rRNA methyltransf 100.0 2.5E-70 5.5E-75 568.4 38.3 350 59-451 4-354 (431)
3 TIGR00563 rsmB ribosomal RNA s 100.0 1.6E-67 3.5E-72 548.3 39.8 354 61-451 1-356 (426)
4 PRK10901 16S rRNA methyltransf 100.0 2.4E-67 5.2E-72 546.9 39.6 356 59-450 3-359 (427)
5 PRK14904 16S rRNA methyltransf 100.0 7.7E-67 1.7E-71 545.8 40.3 362 59-451 3-365 (445)
6 PRK14902 16S rRNA methyltransf 100.0 8.8E-67 1.9E-71 545.6 40.4 363 59-451 4-367 (444)
7 COG0144 Sun tRNA and rRNA cyto 100.0 8.9E-52 1.9E-56 419.1 26.4 272 166-451 1-276 (355)
8 PRK11933 yebU rRNA (cytosine-C 100.0 3.8E-47 8.2E-52 395.6 24.2 221 228-450 3-229 (470)
9 KOG1122 tRNA and rRNA cytosine 100.0 2.3E-42 4.9E-47 342.8 17.9 345 85-451 13-359 (460)
10 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 5.6E-42 1.2E-46 337.8 16.8 201 249-451 1-203 (283)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 1.6E-36 3.4E-41 296.8 20.1 187 261-451 1-187 (264)
12 PRK00202 nusB transcription an 99.9 1.4E-26 3E-31 204.7 13.9 129 58-203 4-133 (137)
13 PF01029 NusB: NusB family; I 99.9 4.9E-27 1.1E-31 206.7 10.7 125 59-200 2-134 (134)
14 cd00619 Terminator_NusB Transc 99.9 1.7E-26 3.7E-31 202.2 13.3 127 58-201 2-129 (130)
15 TIGR01951 nusB transcription a 99.9 2E-26 4.4E-31 201.5 13.5 126 58-200 2-128 (129)
16 cd00620 Methyltransferase_Sun 99.9 9E-26 2E-30 196.7 14.0 123 60-201 3-125 (126)
17 KOG2198 tRNA cytosine-5-methyl 99.9 1.8E-25 3.9E-30 220.7 11.4 214 236-451 31-284 (375)
18 COG0781 NusB Transcription ter 99.9 1.5E-24 3.2E-29 192.9 13.4 133 57-202 10-145 (151)
19 KOG2360 Proliferation-associat 99.9 3.5E-24 7.6E-29 211.4 14.1 207 242-451 115-333 (413)
20 cd00447 NusB_Sun RNA binding d 99.9 7.6E-23 1.7E-27 178.8 14.0 124 60-201 2-128 (129)
21 PRK09634 nusB transcription an 99.9 3.5E-21 7.5E-26 179.2 12.1 93 109-202 110-202 (207)
22 PRK09328 N5-glutamine S-adenos 99.3 2.4E-11 5.2E-16 119.2 14.3 178 231-427 9-199 (275)
23 TIGR00080 pimt protein-L-isoas 99.3 1.7E-11 3.6E-16 116.5 11.8 93 322-416 66-158 (215)
24 COG2226 UbiE Methylase involve 99.3 1E-11 2.2E-16 119.0 10.1 84 324-410 42-125 (238)
25 COG2242 CobL Precorrin-6B meth 99.3 1.7E-11 3.6E-16 112.1 10.6 87 322-411 23-109 (187)
26 PRK03522 rumB 23S rRNA methylu 99.3 1.1E-11 2.5E-16 124.4 10.1 87 328-418 168-254 (315)
27 TIGR03704 PrmC_rel_meth putati 99.3 3.9E-11 8.4E-16 116.7 11.9 112 334-450 87-203 (251)
28 PF13659 Methyltransf_26: Meth 99.3 3E-11 6.5E-16 102.8 9.8 82 334-417 1-83 (117)
29 PF05175 MTS: Methyltransferas 99.3 1.6E-11 3.5E-16 112.4 8.4 92 319-414 17-108 (170)
30 PRK13944 protein-L-isoaspartat 99.2 5.5E-11 1.2E-15 112.2 11.7 91 323-414 62-152 (205)
31 PF09445 Methyltransf_15: RNA 99.2 5.5E-11 1.2E-15 107.4 11.1 103 335-440 1-106 (163)
32 PF01209 Ubie_methyltran: ubiE 99.2 2.2E-11 4.8E-16 117.1 8.7 85 324-410 38-122 (233)
33 PRK14967 putative methyltransf 99.2 7.1E-11 1.5E-15 112.8 11.8 112 313-431 14-131 (223)
34 PRK15128 23S rRNA m(5)C1962 me 99.2 5.9E-11 1.3E-15 122.5 11.9 104 308-416 198-305 (396)
35 COG4123 Predicted O-methyltran 99.2 5.5E-11 1.2E-15 114.1 10.6 99 321-420 32-131 (248)
36 PRK13942 protein-L-isoaspartat 99.2 7.8E-11 1.7E-15 111.8 11.6 95 316-412 59-153 (212)
37 PF12847 Methyltransf_18: Meth 99.2 7.9E-11 1.7E-15 99.3 10.1 78 333-412 1-78 (112)
38 TIGR01177 conserved hypothetic 99.2 1.1E-10 2.5E-15 117.9 12.4 89 324-417 173-261 (329)
39 PF01135 PCMT: Protein-L-isoas 99.2 6.9E-11 1.5E-15 111.7 10.0 93 322-416 61-153 (209)
40 PRK13168 rumA 23S rRNA m(5)U19 99.2 6.4E-11 1.4E-15 124.4 10.6 89 326-418 290-381 (443)
41 COG2263 Predicted RNA methylas 99.2 1E-10 2.2E-15 106.6 10.4 88 330-428 42-129 (198)
42 PF08704 GCD14: tRNA methyltra 99.2 9.2E-11 2E-15 113.2 10.7 97 321-417 28-126 (247)
43 TIGR03533 L3_gln_methyl protei 99.2 1E-10 2.2E-15 115.8 11.2 88 331-421 119-206 (284)
44 COG2519 GCD14 tRNA(1-methylade 99.2 2E-10 4.3E-15 109.5 11.5 102 310-413 71-172 (256)
45 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.1E-10 2.4E-15 129.0 11.1 106 308-418 516-622 (702)
46 PF13847 Methyltransf_31: Meth 99.2 2E-10 4.3E-15 102.9 10.7 82 332-414 2-83 (152)
47 PRK11805 N5-glutamine S-adenos 99.2 2.8E-10 6.1E-15 113.9 12.5 85 334-421 134-218 (307)
48 COG2518 Pcm Protein-L-isoaspar 99.1 2.7E-10 5.8E-15 106.3 10.7 98 312-414 51-148 (209)
49 PRK10909 rsmD 16S rRNA m(2)G96 99.1 2.2E-10 4.7E-15 107.5 9.9 80 332-414 52-131 (199)
50 PRK00377 cbiT cobalt-precorrin 99.1 2.7E-10 5.9E-15 106.8 10.5 90 323-412 30-119 (198)
51 COG2265 TrmA SAM-dependent met 99.1 1.5E-10 3.3E-15 120.3 9.5 91 324-418 284-376 (432)
52 PLN02476 O-methyltransferase 99.1 2.2E-10 4.7E-15 112.3 9.6 98 317-414 102-204 (278)
53 PLN02781 Probable caffeoyl-CoA 99.1 2.1E-10 4.7E-15 110.4 9.0 92 322-413 57-153 (234)
54 COG1092 Predicted SAM-dependen 99.1 2.7E-10 5.8E-15 116.5 10.0 129 308-447 195-327 (393)
55 PF05958 tRNA_U5-meth_tr: tRNA 99.1 1.5E-10 3.1E-15 118.1 7.9 89 325-418 189-292 (352)
56 TIGR00479 rumA 23S rRNA (uraci 99.1 3.4E-10 7.4E-15 118.6 10.3 88 326-417 285-375 (431)
57 TIGR00537 hemK_rel_arch HemK-r 99.1 6.5E-10 1.4E-14 102.4 10.9 91 319-417 5-95 (179)
58 TIGR02085 meth_trns_rumB 23S r 99.1 4E-10 8.7E-15 115.8 10.1 86 329-418 229-314 (374)
59 COG4122 Predicted O-methyltran 99.1 6E-10 1.3E-14 105.3 10.1 95 319-413 45-141 (219)
60 TIGR02469 CbiT precorrin-6Y C5 99.1 1.2E-09 2.6E-14 93.4 10.9 85 326-412 12-96 (124)
61 PRK04266 fibrillarin; Provisio 99.1 7.4E-10 1.6E-14 106.0 10.5 89 321-413 58-150 (226)
62 PRK07402 precorrin-6B methylas 99.1 9E-10 2E-14 103.0 10.6 98 313-412 20-117 (196)
63 PF03602 Cons_hypoth95: Conser 99.1 3.1E-10 6.7E-15 105.1 7.2 82 333-416 42-126 (183)
64 PF10672 Methyltrans_SAM: S-ad 99.1 4.4E-10 9.6E-15 110.7 8.6 104 308-416 101-207 (286)
65 PTZ00146 fibrillarin; Provisio 99.1 7.7E-10 1.7E-14 108.7 10.3 82 329-413 128-211 (293)
66 PF01596 Methyltransf_3: O-met 99.0 4.5E-10 9.8E-15 105.8 7.1 92 323-414 35-131 (205)
67 TIGR02752 MenG_heptapren 2-hep 99.0 1.7E-09 3.6E-14 103.5 11.0 87 324-412 36-122 (231)
68 PRK00312 pcm protein-L-isoaspa 99.0 1.9E-09 4.2E-14 102.0 11.2 95 317-416 62-156 (212)
69 PF01170 UPF0020: Putative RNA 99.0 1.8E-09 3.9E-14 99.7 10.6 93 321-414 16-116 (179)
70 PRK00107 gidB 16S rRNA methylt 99.0 1.8E-09 4E-14 100.3 10.6 76 333-412 45-120 (187)
71 PRK05031 tRNA (uracil-5-)-meth 99.0 1.2E-09 2.6E-14 111.9 10.1 81 334-418 207-302 (362)
72 COG0742 N6-adenine-specific me 99.0 1.3E-09 2.9E-14 100.1 8.9 85 332-419 42-128 (187)
73 PRK00050 16S rRNA m(4)C1402 me 99.0 1.1E-09 2.4E-14 108.3 8.8 92 325-419 11-105 (296)
74 TIGR03534 RF_mod_PrmC protein- 99.0 4E-09 8.6E-14 101.8 12.6 85 333-421 87-171 (251)
75 PRK13943 protein-L-isoaspartat 99.0 2.5E-09 5.5E-14 107.4 11.3 87 325-413 72-158 (322)
76 TIGR00138 gidB 16S rRNA methyl 99.0 1.9E-09 4E-14 99.8 9.4 76 333-412 42-117 (181)
77 PF02475 Met_10: Met-10+ like- 99.0 1.7E-09 3.8E-14 101.3 9.0 84 331-417 99-182 (200)
78 TIGR02143 trmA_only tRNA (urac 99.0 2E-09 4.3E-14 109.8 10.2 80 335-418 199-293 (353)
79 TIGR00095 RNA methyltransferas 99.0 1.6E-09 3.5E-14 101.0 8.7 82 333-416 49-133 (189)
80 PRK15001 SAM-dependent 23S rib 99.0 2.5E-09 5.5E-14 109.4 10.8 94 319-415 214-309 (378)
81 PRK14966 unknown domain/N5-glu 99.0 2.9E-09 6.3E-14 109.4 11.2 97 320-419 237-334 (423)
82 TIGR00536 hemK_fam HemK family 99.0 3.2E-09 6.9E-14 105.2 11.1 84 334-420 115-198 (284)
83 COG2890 HemK Methylase of poly 99.0 2.6E-09 5.6E-14 105.5 9.8 78 336-418 113-190 (280)
84 PRK08287 cobalt-precorrin-6Y C 99.0 4.4E-09 9.6E-14 97.5 10.8 91 317-412 15-105 (187)
85 PLN02233 ubiquinone biosynthes 98.9 5.3E-09 1.2E-13 102.4 10.6 85 324-410 64-151 (261)
86 COG2813 RsmC 16S RNA G1207 met 98.9 5.5E-09 1.2E-13 102.4 10.0 92 319-415 144-235 (300)
87 COG2230 Cfa Cyclopropane fatty 98.9 5.5E-09 1.2E-13 102.1 9.1 87 318-410 57-143 (283)
88 PLN02589 caffeoyl-CoA O-methyl 98.9 4.7E-09 1E-13 101.6 8.5 94 320-413 66-165 (247)
89 TIGR00438 rrmJ cell division p 98.9 9.3E-09 2E-13 95.5 9.8 80 328-419 27-113 (188)
90 PF02353 CMAS: Mycolic acid cy 98.9 6.9E-09 1.5E-13 102.1 9.1 87 318-410 47-133 (273)
91 smart00650 rADc Ribosomal RNA 98.9 1.2E-08 2.5E-13 93.3 9.6 84 325-415 5-88 (169)
92 PRK14968 putative methyltransf 98.9 1.6E-08 3.4E-13 93.2 10.4 92 322-418 12-104 (188)
93 PRK00121 trmB tRNA (guanine-N( 98.9 1E-08 2.2E-13 96.6 9.2 79 333-413 40-120 (202)
94 PRK11873 arsM arsenite S-adeno 98.9 1.3E-08 2.9E-13 99.9 10.5 83 328-412 72-154 (272)
95 PRK11207 tellurite resistance 98.8 1.6E-08 3.5E-13 94.7 10.3 83 323-411 20-102 (197)
96 PRK04338 N(2),N(2)-dimethylgua 98.8 1.1E-08 2.4E-13 105.3 9.9 89 322-413 45-134 (382)
97 PLN02244 tocopherol O-methyltr 98.8 1.4E-08 3.1E-13 103.1 10.5 76 332-410 117-192 (340)
98 PRK11036 putative S-adenosyl-L 98.8 1.1E-08 2.4E-13 99.6 9.2 79 332-413 43-121 (255)
99 PRK09489 rsmC 16S ribosomal RN 98.8 1.5E-08 3.3E-13 102.8 10.5 91 318-414 181-271 (342)
100 PRK01544 bifunctional N5-gluta 98.8 1.4E-08 3.1E-13 108.2 9.9 84 333-419 138-221 (506)
101 KOG2915 tRNA(1-methyladenosine 98.8 2.5E-08 5.3E-13 95.6 10.1 94 322-415 94-188 (314)
102 PTZ00338 dimethyladenosine tra 98.8 2E-08 4.3E-13 99.8 10.0 96 317-418 20-115 (294)
103 KOG2904 Predicted methyltransf 98.8 1.5E-08 3.2E-13 97.2 8.6 95 333-428 148-247 (328)
104 KOG1540 Ubiquinone biosynthesi 98.8 2.2E-08 4.7E-13 95.2 9.7 86 324-410 91-183 (296)
105 KOG2730 Methylase [General fun 98.8 7E-09 1.5E-13 96.4 5.0 86 333-421 94-182 (263)
106 PHA03412 putative methyltransf 98.8 1.5E-08 3.3E-13 96.6 7.3 78 333-418 49-128 (241)
107 TIGR00091 tRNA (guanine-N(7)-) 98.8 3.2E-08 6.9E-13 92.5 9.0 79 333-413 16-96 (194)
108 PF13649 Methyltransf_25: Meth 98.7 2.4E-08 5.2E-13 83.0 7.2 71 337-410 1-73 (101)
109 PRK10742 putative methyltransf 98.7 4.5E-08 9.8E-13 93.9 9.8 92 322-416 75-176 (250)
110 TIGR00477 tehB tellurite resis 98.7 4.3E-08 9.3E-13 91.8 9.4 96 310-413 8-103 (195)
111 COG1041 Predicted DNA modifica 98.7 5.6E-08 1.2E-12 97.1 10.5 92 321-417 185-277 (347)
112 PRK15451 tRNA cmo(5)U34 methyl 98.7 4.3E-08 9.3E-13 95.1 9.5 77 331-410 54-131 (247)
113 PLN03075 nicotianamine synthas 98.7 4.1E-08 9E-13 96.9 8.8 78 333-411 123-202 (296)
114 COG2520 Predicted methyltransf 98.7 4.3E-08 9.4E-13 98.4 8.8 83 331-416 186-268 (341)
115 PHA03411 putative methyltransf 98.7 5.5E-08 1.2E-12 94.8 9.1 90 330-428 61-150 (279)
116 PRK14896 ksgA 16S ribosomal RN 98.7 7E-08 1.5E-12 94.3 9.5 91 317-416 13-103 (258)
117 TIGR00406 prmA ribosomal prote 98.7 8.4E-08 1.8E-12 95.3 10.1 88 321-413 145-234 (288)
118 COG2264 PrmA Ribosomal protein 98.7 5.2E-08 1.1E-12 96.1 8.2 89 320-412 147-237 (300)
119 PRK00274 ksgA 16S ribosomal RN 98.7 7.2E-08 1.6E-12 95.0 8.8 87 322-416 31-117 (272)
120 TIGR00308 TRM1 tRNA(guanine-26 98.7 7.2E-08 1.6E-12 98.8 9.1 79 335-414 46-124 (374)
121 PRK11188 rrmJ 23S rRNA methylt 98.7 1.4E-07 3E-12 89.3 10.5 69 332-412 50-125 (209)
122 PRK14121 tRNA (guanine-N(7)-)- 98.7 1E-07 2.3E-12 97.4 10.2 86 328-415 117-203 (390)
123 PRK11727 23S rRNA mA1618 methy 98.7 8.8E-08 1.9E-12 96.0 9.5 86 333-419 114-204 (321)
124 TIGR02021 BchM-ChlM magnesium 98.7 1.2E-07 2.7E-12 90.0 9.9 73 331-410 53-125 (219)
125 PRK04457 spermidine synthase; 98.7 9.4E-08 2E-12 93.6 9.3 81 332-413 65-145 (262)
126 PF06325 PrmA: Ribosomal prote 98.6 8E-08 1.7E-12 95.3 8.4 85 320-411 146-232 (295)
127 PLN02396 hexaprenyldihydroxybe 98.6 1E-07 2.2E-12 95.9 9.3 77 330-410 128-204 (322)
128 PRK01683 trans-aconitate 2-met 98.6 1.5E-07 3.3E-12 91.6 10.0 88 317-413 15-102 (258)
129 TIGR00740 methyltransferase, p 98.6 1.8E-07 3.9E-12 90.2 10.0 77 332-411 52-129 (239)
130 PRK00216 ubiE ubiquinone/menaq 98.6 2.2E-07 4.9E-12 88.6 10.5 85 325-410 43-127 (239)
131 PTZ00098 phosphoethanolamine N 98.6 1.7E-07 3.6E-12 91.9 9.4 96 309-410 27-123 (263)
132 PLN02672 methionine S-methyltr 98.6 1.4E-07 3.1E-12 107.2 10.0 85 334-419 119-218 (1082)
133 PRK08317 hypothetical protein; 98.6 2.8E-07 6.1E-12 87.6 10.4 83 326-411 12-94 (241)
134 PRK14103 trans-aconitate 2-met 98.6 1.8E-07 3.8E-12 91.2 8.7 78 325-413 21-98 (255)
135 PRK10258 biotin biosynthesis p 98.5 1.4E-07 3E-12 91.5 7.2 86 317-412 26-111 (251)
136 KOG3420 Predicted RNA methylas 98.5 9.6E-08 2.1E-12 83.4 5.1 89 332-428 47-135 (185)
137 PRK00517 prmA ribosomal protei 98.5 3.3E-07 7.2E-12 89.1 9.3 71 331-412 117-187 (250)
138 PRK12335 tellurite resistance 98.5 3.8E-07 8.3E-12 90.5 9.8 78 328-412 115-192 (287)
139 COG2227 UbiG 2-polyprenyl-3-me 98.5 1.5E-07 3.3E-12 89.3 6.5 73 332-410 58-130 (243)
140 TIGR03587 Pse_Me-ase pseudamin 98.5 2.5E-07 5.4E-12 87.3 8.0 72 330-410 40-111 (204)
141 PRK06202 hypothetical protein; 98.5 2.7E-07 5.9E-12 88.5 8.2 78 329-411 56-136 (232)
142 PF08241 Methyltransf_11: Meth 98.5 2.6E-07 5.6E-12 74.6 6.5 66 338-410 1-66 (95)
143 TIGR00452 methyltransferase, p 98.5 1.9E-06 4.1E-11 86.5 14.0 80 327-410 115-194 (314)
144 PF03848 TehB: Tellurite resis 98.5 7E-07 1.5E-11 83.1 9.9 77 327-410 24-100 (192)
145 cd02440 AdoMet_MTases S-adenos 98.5 5.1E-07 1.1E-11 72.8 8.0 79 336-417 1-79 (107)
146 KOG1663 O-methyltransferase [S 98.5 5.4E-07 1.2E-11 84.8 9.0 97 317-413 57-158 (237)
147 PRK07580 Mg-protoporphyrin IX 98.5 5.3E-07 1.1E-11 85.9 9.2 73 332-411 62-134 (230)
148 COG0116 Predicted N6-adenine-s 98.5 8.2E-07 1.8E-11 90.0 10.5 90 325-415 183-310 (381)
149 PLN02336 phosphoethanolamine N 98.5 6.6E-07 1.4E-11 94.9 10.3 84 322-410 255-338 (475)
150 PRK15068 tRNA mo(5)U34 methylt 98.5 8.3E-07 1.8E-11 89.5 10.4 82 325-410 114-195 (322)
151 PLN02585 magnesium protoporphy 98.5 6.6E-07 1.4E-11 89.8 9.3 71 333-410 144-218 (315)
152 PRK11705 cyclopropane fatty ac 98.4 6E-07 1.3E-11 92.6 9.2 80 321-410 155-234 (383)
153 KOG2187 tRNA uracil-5-methyltr 98.4 2.5E-07 5.5E-12 95.8 6.2 91 325-419 375-470 (534)
154 smart00828 PKS_MT Methyltransf 98.4 9.2E-07 2E-11 84.1 9.2 73 335-410 1-73 (224)
155 PRK00811 spermidine synthase; 98.4 9.1E-07 2E-11 87.6 9.3 80 333-413 76-159 (283)
156 PF02384 N6_Mtase: N-6 DNA Met 98.4 4.6E-07 1E-11 90.7 7.2 106 313-418 26-139 (311)
157 PRK06922 hypothetical protein; 98.4 9.8E-07 2.1E-11 95.1 10.0 83 327-412 412-495 (677)
158 TIGR00006 S-adenosyl-methyltra 98.4 1E-06 2.2E-11 87.5 9.2 91 326-419 13-107 (305)
159 PRK05785 hypothetical protein; 98.4 6.8E-07 1.5E-11 85.7 7.7 66 333-410 51-116 (226)
160 TIGR00755 ksgA dimethyladenosi 98.4 1.1E-06 2.3E-11 85.7 9.1 85 322-415 18-105 (253)
161 TIGR02716 C20_methyl_CrtF C-20 98.4 1.9E-06 4.1E-11 86.2 10.4 84 322-410 138-221 (306)
162 TIGR01934 MenG_MenH_UbiE ubiqu 98.3 3.1E-06 6.8E-11 79.8 9.6 81 326-410 32-112 (223)
163 COG0030 KsgA Dimethyladenosine 98.3 3E-06 6.5E-11 82.2 9.5 91 322-418 19-109 (259)
164 PRK11783 rlmL 23S rRNA m(2)G24 98.3 3.4E-06 7.3E-11 93.6 11.1 84 332-415 189-314 (702)
165 PRK05134 bifunctional 3-demeth 98.3 3.8E-06 8.2E-11 80.4 9.9 84 324-412 39-122 (233)
166 KOG1270 Methyltransferases [Co 98.3 1.1E-06 2.3E-11 84.3 5.9 74 330-410 86-164 (282)
167 COG4106 Tam Trans-aconitate me 98.3 1.4E-06 3E-11 81.3 6.0 84 319-412 17-100 (257)
168 PF08003 Methyltransf_9: Prote 98.3 3.7E-05 8E-10 75.8 16.2 168 229-422 17-194 (315)
169 KOG1661 Protein-L-isoaspartate 98.3 6.6E-06 1.4E-10 76.4 10.2 142 270-416 9-174 (237)
170 PRK11088 rrmA 23S rRNA methylt 98.3 2.9E-06 6.3E-11 83.5 8.4 72 332-410 84-157 (272)
171 TIGR02072 BioC biotin biosynth 98.2 2.5E-06 5.4E-11 81.2 7.5 91 317-414 15-108 (240)
172 COG2521 Predicted archaeal met 98.2 6.3E-07 1.4E-11 84.3 3.2 89 327-417 128-218 (287)
173 TIGR03438 probable methyltrans 98.2 4.3E-06 9.2E-11 83.6 9.2 66 332-397 62-127 (301)
174 TIGR01983 UbiG ubiquinone bios 98.2 5.5E-06 1.2E-10 78.6 9.5 76 332-411 44-119 (224)
175 KOG3191 Predicted N6-DNA-methy 98.2 5.5E-06 1.2E-10 75.3 8.8 79 334-416 44-122 (209)
176 PF01728 FtsJ: FtsJ-like methy 98.2 3.8E-06 8.3E-11 77.3 8.1 75 331-417 21-106 (181)
177 PLN02366 spermidine synthase 98.2 5.5E-06 1.2E-10 82.9 9.4 82 332-414 90-175 (308)
178 TIGR03840 TMPT_Se_Te thiopurin 98.2 5.7E-06 1.2E-10 78.6 8.9 73 332-410 33-119 (213)
179 PLN02490 MPBQ/MSBQ methyltrans 98.2 4.4E-06 9.4E-11 84.6 8.5 74 332-411 112-185 (340)
180 PRK13255 thiopurine S-methyltr 98.2 7.8E-06 1.7E-10 77.9 9.6 74 330-409 34-121 (218)
181 TIGR00417 speE spermidine synt 98.2 6.9E-06 1.5E-10 80.8 9.4 79 334-413 73-154 (270)
182 PF05401 NodS: Nodulation prot 98.2 2.7E-06 6E-11 78.7 6.0 86 317-410 27-112 (201)
183 PLN02336 phosphoethanolamine N 98.2 5.5E-06 1.2E-10 87.9 8.9 91 318-414 22-113 (475)
184 KOG1271 Methyltransferases [Ge 98.2 5.1E-06 1.1E-10 75.5 7.3 73 335-409 69-141 (227)
185 PRK01581 speE spermidine synth 98.2 6.4E-06 1.4E-10 83.5 8.6 79 334-413 151-235 (374)
186 PF08242 Methyltransf_12: Meth 98.2 4.5E-07 9.8E-12 74.8 0.2 71 338-410 1-72 (99)
187 PF02390 Methyltransf_4: Putat 98.1 1.7E-05 3.8E-10 74.2 10.8 100 334-439 18-120 (195)
188 PRK03612 spermidine synthase; 98.1 4.6E-06 9.9E-11 89.5 7.8 83 332-415 296-384 (521)
189 KOG0820 Ribosomal RNA adenine 98.1 1.1E-05 2.4E-10 77.6 8.8 89 325-419 50-140 (315)
190 PF01269 Fibrillarin: Fibrilla 98.1 3.2E-05 6.9E-10 73.0 10.6 84 330-416 70-155 (229)
191 smart00138 MeTrc Methyltransfe 98.1 5.6E-06 1.2E-10 81.2 5.8 78 332-410 98-209 (264)
192 PF07021 MetW: Methionine bios 98.0 1.1E-05 2.5E-10 74.5 7.2 70 331-410 11-81 (193)
193 TIGR02081 metW methionine bios 98.0 1.5E-05 3.2E-10 74.4 7.9 72 332-413 12-84 (194)
194 COG0293 FtsJ 23S rRNA methylas 98.0 9.6E-06 2.1E-10 75.8 6.1 77 331-419 43-126 (205)
195 PRK11760 putative 23S rRNA C24 98.0 1.7E-05 3.7E-10 79.5 7.5 78 331-420 209-286 (357)
196 KOG1541 Predicted protein carb 98.0 1.6E-05 3.5E-10 74.4 6.7 87 314-409 29-117 (270)
197 PF01795 Methyltransf_5: MraW 98.0 5.7E-06 1.2E-10 82.3 3.9 92 325-419 12-108 (310)
198 COG4076 Predicted RNA methylas 97.9 1.4E-05 3E-10 73.0 4.9 71 334-411 33-103 (252)
199 TIGR00478 tly hemolysin TlyA f 97.8 2.4E-05 5.1E-10 75.0 5.7 44 332-377 74-118 (228)
200 COG0286 HsdM Type I restrictio 97.8 5E-05 1.1E-09 80.9 8.3 108 313-420 166-280 (489)
201 PF04445 SAM_MT: Putative SAM- 97.8 4.3E-05 9.4E-10 73.0 7.0 91 322-415 62-162 (234)
202 PF05185 PRMT5: PRMT5 arginine 97.8 3.7E-05 7.9E-10 80.8 7.0 77 334-412 187-266 (448)
203 COG0220 Predicted S-adenosylme 97.8 7.5E-05 1.6E-09 71.5 8.5 79 335-415 50-130 (227)
204 PF02527 GidB: rRNA small subu 97.8 0.00013 2.9E-09 67.6 9.6 76 336-415 51-126 (184)
205 PLN02823 spermine synthase 97.8 8.9E-05 1.9E-09 75.1 9.1 79 334-413 104-185 (336)
206 COG0275 Predicted S-adenosylme 97.8 0.0001 2.2E-09 72.3 9.1 92 325-418 15-110 (314)
207 KOG1499 Protein arginine N-met 97.8 8.6E-05 1.9E-09 74.2 8.6 75 332-410 59-133 (346)
208 cd00315 Cyt_C5_DNA_methylase C 97.8 4.8E-05 1E-09 75.1 6.8 79 336-423 2-81 (275)
209 KOG2671 Putative RNA methylase 97.8 1.7E-05 3.6E-10 78.6 3.4 92 320-414 195-294 (421)
210 PF01861 DUF43: Protein of unk 97.8 9.6E-05 2.1E-09 70.6 8.4 111 333-448 44-169 (243)
211 TIGR02987 met_A_Alw26 type II 97.7 7.9E-05 1.7E-09 80.2 8.4 85 334-419 32-127 (524)
212 PF13489 Methyltransf_23: Meth 97.7 8.2E-05 1.8E-09 66.1 6.9 49 322-373 10-59 (161)
213 PF00398 RrnaAD: Ribosomal RNA 97.7 0.00013 2.8E-09 71.5 8.7 87 322-414 19-107 (262)
214 COG0357 GidB Predicted S-adeno 97.7 0.00019 4.1E-09 68.0 8.7 82 334-418 68-149 (215)
215 PRK04148 hypothetical protein; 97.7 0.00016 3.6E-09 63.3 7.5 73 327-410 10-83 (134)
216 COG1889 NOP1 Fibrillarin-like 97.6 0.00022 4.8E-09 66.1 7.9 80 330-413 73-154 (231)
217 PF10294 Methyltransf_16: Puta 97.6 0.00024 5.1E-09 65.3 7.7 78 331-410 43-125 (173)
218 PRK13256 thiopurine S-methyltr 97.6 0.00028 6E-09 67.5 8.4 76 331-410 41-130 (226)
219 PF13578 Methyltransf_24: Meth 97.5 1.5E-05 3.2E-10 66.7 -0.6 81 338-419 1-84 (106)
220 KOG1500 Protein arginine N-met 97.5 0.00032 7E-09 69.4 8.4 76 333-413 177-252 (517)
221 TIGR01444 fkbM_fam methyltrans 97.5 0.0003 6.5E-09 61.8 7.4 58 336-395 1-58 (143)
222 KOG4300 Predicted methyltransf 97.5 0.00021 4.5E-09 66.5 6.1 89 328-418 71-160 (252)
223 KOG4589 Cell division protein 97.5 0.00066 1.4E-08 62.2 9.1 76 332-419 68-151 (232)
224 PF02005 TRM: N2,N2-dimethylgu 97.5 0.00032 6.9E-09 72.2 7.9 81 334-414 50-131 (377)
225 PRK01544 bifunctional N5-gluta 97.4 0.0012 2.6E-08 70.7 11.6 82 332-415 346-428 (506)
226 PF05724 TPMT: Thiopurine S-me 97.4 0.00033 7.1E-09 66.8 6.4 91 329-427 33-134 (218)
227 PF01564 Spermine_synth: Sperm 97.4 0.00052 1.1E-08 66.7 7.5 81 333-414 76-160 (246)
228 PF05971 Methyltransf_10: Prot 97.3 0.00076 1.6E-08 66.9 8.0 83 334-417 103-190 (299)
229 PF13679 Methyltransf_32: Meth 97.3 0.00092 2E-08 59.2 7.7 64 332-395 24-92 (141)
230 COG0421 SpeE Spermidine syntha 97.3 0.001 2.2E-08 65.8 8.4 89 322-412 66-157 (282)
231 COG3963 Phospholipid N-methylt 97.3 0.0012 2.6E-08 59.6 7.9 89 324-418 39-131 (194)
232 COG3897 Predicted methyltransf 97.2 0.00031 6.8E-09 64.8 4.3 70 333-410 79-148 (218)
233 KOG2899 Predicted methyltransf 97.2 0.0011 2.4E-08 63.2 7.5 47 333-380 58-104 (288)
234 KOG1099 SAM-dependent methyltr 97.2 0.00094 2E-08 63.0 6.5 89 335-450 43-146 (294)
235 KOG1596 Fibrillarin and relate 97.1 0.00087 1.9E-08 63.7 5.3 85 330-417 153-239 (317)
236 PF04816 DUF633: Family of unk 97.0 0.0026 5.6E-08 60.1 8.1 72 337-410 1-72 (205)
237 KOG3010 Methyltransferase [Gen 97.0 0.00073 1.6E-08 64.4 4.3 80 327-410 26-106 (261)
238 COG1867 TRM1 N2,N2-dimethylgua 97.0 0.0016 3.5E-08 65.6 6.6 78 334-413 53-130 (380)
239 PF00891 Methyltransf_2: O-met 96.9 0.0067 1.5E-07 58.3 10.5 87 325-437 92-178 (241)
240 COG4976 Predicted methyltransf 96.9 0.00033 7.2E-09 66.1 1.0 71 330-409 122-193 (287)
241 PF03291 Pox_MCEL: mRNA cappin 96.9 0.0033 7.1E-08 63.7 8.0 76 333-410 62-151 (331)
242 PF00145 DNA_methylase: C-5 cy 96.8 0.002 4.4E-08 64.2 6.2 77 336-422 2-79 (335)
243 KOG1227 Putative methyltransfe 96.8 0.00046 1E-08 67.5 1.4 75 333-411 194-269 (351)
244 PF12147 Methyltransf_20: Puta 96.8 0.0083 1.8E-07 59.0 9.5 87 333-425 135-224 (311)
245 PF08123 DOT1: Histone methyla 96.7 0.0049 1.1E-07 58.2 7.4 89 327-416 36-134 (205)
246 PHA01634 hypothetical protein 96.6 0.0093 2E-07 51.5 7.6 76 329-412 25-100 (156)
247 COG1189 Predicted rRNA methyla 96.5 0.004 8.6E-08 59.4 5.3 77 333-417 79-157 (245)
248 TIGR00675 dcm DNA-methyltransf 96.5 0.0048 1E-07 62.2 6.2 79 337-424 1-79 (315)
249 KOG1253 tRNA methyltransferase 96.4 0.0019 4.1E-08 67.2 2.3 83 331-413 107-192 (525)
250 KOG2078 tRNA modification enzy 96.3 0.0023 5E-08 65.4 2.8 66 331-399 247-313 (495)
251 PF05219 DREV: DREV methyltran 96.1 0.015 3.3E-07 56.3 6.8 45 333-384 94-138 (265)
252 COG4262 Predicted spermidine s 96.0 0.027 5.8E-07 56.9 8.2 88 332-420 288-381 (508)
253 TIGR03439 methyl_EasF probable 96.0 0.019 4.2E-07 57.8 7.3 66 332-397 75-144 (319)
254 PF06080 DUF938: Protein of un 95.9 0.022 4.8E-07 53.5 6.9 76 334-410 26-108 (204)
255 KOG1098 Putative SAM-dependent 95.9 0.0067 1.4E-07 64.6 3.5 39 331-369 42-80 (780)
256 KOG2782 Putative SAM dependent 95.8 0.0056 1.2E-07 57.5 2.4 93 325-419 35-133 (303)
257 PF03059 NAS: Nicotianamine sy 95.7 0.043 9.2E-07 54.1 8.2 78 335-413 122-201 (276)
258 COG2384 Predicted SAM-dependen 95.5 0.051 1.1E-06 51.4 7.7 77 332-410 15-91 (226)
259 COG0270 Dcm Site-specific DNA 95.5 0.03 6.5E-07 56.7 6.7 81 335-423 4-86 (328)
260 TIGR00497 hsdM type I restrict 95.5 0.047 1E-06 58.6 8.5 106 312-417 194-306 (501)
261 PF09243 Rsm22: Mitochondrial 95.5 0.035 7.5E-07 54.8 6.7 48 334-381 34-81 (274)
262 PF11599 AviRa: RRNA methyltra 95.4 0.038 8.3E-07 52.0 6.4 47 334-380 52-99 (246)
263 COG1568 Predicted methyltransf 95.3 0.033 7.2E-07 54.2 5.9 83 333-418 152-235 (354)
264 PRK10458 DNA cytosine methylas 95.2 0.089 1.9E-06 55.7 9.0 84 334-422 88-187 (467)
265 KOG1501 Arginine N-methyltrans 95.0 0.041 9E-07 56.7 5.8 60 336-397 69-128 (636)
266 KOG2361 Predicted methyltransf 95.0 0.026 5.6E-07 54.0 3.9 72 336-409 74-149 (264)
267 PF07279 DUF1442: Protein of u 94.9 0.15 3.3E-06 48.1 8.9 96 317-413 25-124 (218)
268 PF04989 CmcI: Cephalosporin h 94.6 0.041 8.9E-07 51.8 4.3 104 313-419 11-126 (206)
269 KOG1975 mRNA cap methyltransfe 94.4 0.088 1.9E-06 52.5 6.3 85 322-410 108-202 (389)
270 PRK00536 speE spermidine synth 94.3 0.19 4.2E-06 49.2 8.3 71 334-411 73-146 (262)
271 PRK11524 putative methyltransf 94.1 0.1 2.3E-06 51.7 6.1 46 332-380 207-252 (284)
272 COG2933 Predicted SAM-dependen 94.1 0.11 2.4E-06 50.4 5.8 70 331-412 209-278 (358)
273 PF05891 Methyltransf_PK: AdoM 93.9 0.098 2.1E-06 49.6 5.3 74 333-410 55-128 (218)
274 PLN02232 ubiquinone biosynthes 93.9 0.082 1.8E-06 47.7 4.6 48 362-410 1-50 (160)
275 PRK10611 chemotaxis methyltran 93.9 0.073 1.6E-06 52.9 4.6 76 335-410 117-229 (287)
276 COG0500 SmtA SAM-dependent met 93.9 0.32 6.9E-06 40.5 8.1 73 337-411 52-126 (257)
277 PF07091 FmrO: Ribosomal RNA m 93.6 0.18 4E-06 48.7 6.7 73 333-410 105-177 (251)
278 PF01555 N6_N4_Mtase: DNA meth 93.6 0.13 2.8E-06 48.2 5.6 43 331-376 189-231 (231)
279 PF06962 rRNA_methylase: Putat 93.3 0.21 4.5E-06 44.2 5.9 52 360-411 1-53 (140)
280 PF01739 CheR: CheR methyltran 93.1 0.07 1.5E-06 50.0 2.8 76 334-410 32-142 (196)
281 COG1352 CheR Methylase of chem 92.9 0.33 7.1E-06 47.7 7.2 44 334-377 97-148 (268)
282 PRK13699 putative methylase; P 92.8 0.25 5.5E-06 47.3 6.3 49 331-382 161-209 (227)
283 KOG3115 Methyltransferase-like 90.6 0.3 6.5E-06 45.7 3.9 62 335-398 62-130 (249)
284 COG3129 Predicted SAM-dependen 89.8 0.52 1.1E-05 45.1 4.8 84 333-417 78-166 (292)
285 PRK01747 mnmC bifunctional tRN 89.1 1.1 2.5E-05 49.6 7.9 98 334-439 58-193 (662)
286 COG1064 AdhP Zn-dependent alco 88.4 1.5 3.3E-05 44.5 7.4 76 329-413 162-238 (339)
287 PF11899 DUF3419: Protein of u 87.8 1.6 3.6E-05 45.1 7.4 65 311-378 12-77 (380)
288 KOG0024 Sorbitol dehydrogenase 86.6 1.4 3E-05 44.2 5.7 56 325-385 161-217 (354)
289 KOG0821 Predicted ribosomal RN 86.3 1.3 2.8E-05 42.1 5.0 70 324-397 41-110 (326)
290 PF05050 Methyltransf_21: Meth 85.7 1.4 3.1E-05 38.8 5.0 43 339-381 1-48 (167)
291 KOG1269 SAM-dependent methyltr 85.7 1.2 2.7E-05 45.7 5.1 85 329-416 106-191 (364)
292 KOG0822 Protein kinase inhibit 85.0 1.4 2.9E-05 47.0 5.0 72 336-409 370-444 (649)
293 PF10354 DUF2431: Domain of un 83.7 8.7 0.00019 35.0 9.2 79 341-419 4-90 (166)
294 KOG2940 Predicted methyltransf 83.7 1.1 2.4E-05 42.9 3.4 71 334-410 73-143 (325)
295 KOG2651 rRNA adenine N-6-methy 83.5 2.4 5.1E-05 43.5 5.8 53 321-375 141-193 (476)
296 PF10237 N6-adenineMlase: Prob 82.2 3.5 7.6E-05 37.5 6.0 89 314-415 4-97 (162)
297 PF04672 Methyltransf_19: S-ad 81.1 2.8 6E-05 41.2 5.2 63 335-398 70-134 (267)
298 PRK08213 gluconate 5-dehydroge 80.9 16 0.00035 34.8 10.6 81 333-416 11-101 (259)
299 COG4798 Predicted methyltransf 80.6 1.8 3.8E-05 40.5 3.5 42 327-368 42-83 (238)
300 KOG0022 Alcohol dehydrogenase, 80.5 3.6 7.9E-05 41.2 5.8 57 326-386 185-241 (375)
301 PLN03209 translocon at the inn 79.8 6.4 0.00014 42.9 7.9 82 329-411 75-166 (576)
302 COG1062 AdhC Zn-dependent alco 79.6 4.3 9.4E-05 41.1 6.1 57 325-385 177-233 (366)
303 KOG3987 Uncharacterized conser 79.4 0.45 9.8E-06 44.7 -0.8 41 333-376 112-152 (288)
304 KOG4058 Uncharacterized conser 79.3 3.9 8.4E-05 36.6 5.0 69 327-397 66-134 (199)
305 PRK06194 hypothetical protein; 78.9 9.1 0.0002 37.1 8.2 83 334-419 6-98 (287)
306 cd08283 FDH_like_1 Glutathione 78.8 4.8 0.0001 41.4 6.5 50 327-377 178-228 (386)
307 KOG1709 Guanidinoacetate methy 78.3 7.2 0.00016 37.1 6.7 78 332-413 100-178 (271)
308 KOG2912 Predicted DNA methylas 76.9 2.6 5.7E-05 42.2 3.6 78 338-416 107-190 (419)
309 PF03141 Methyltransf_29: Puta 76.8 1.9 4.2E-05 45.6 2.9 20 335-354 119-138 (506)
310 PRK08251 short chain dehydroge 76.5 19 0.0004 34.0 9.4 84 334-418 2-95 (248)
311 PF04378 RsmJ: Ribosomal RNA s 76.4 3.4 7.3E-05 40.1 4.2 73 340-416 62-137 (245)
312 PF02254 TrkA_N: TrkA-N domain 76.4 3.1 6.8E-05 34.6 3.6 64 342-413 4-71 (116)
313 PRK07102 short chain dehydroge 74.9 16 0.00035 34.4 8.5 76 336-413 3-85 (243)
314 PRK13394 3-hydroxybutyrate deh 74.8 13 0.00027 35.4 7.8 82 334-418 7-98 (262)
315 PTZ00357 methyltransferase; Pr 74.1 11 0.00024 41.6 7.7 63 336-398 703-776 (1072)
316 PRK06949 short chain dehydroge 73.9 17 0.00036 34.5 8.4 79 333-414 8-96 (258)
317 cd05564 PTS_IIB_chitobiose_lic 73.6 6.9 0.00015 32.1 4.8 49 340-410 4-52 (96)
318 PRK12829 short chain dehydroge 73.5 12 0.00026 35.6 7.3 81 328-413 5-95 (264)
319 COG1063 Tdh Threonine dehydrog 73.4 7.9 0.00017 39.5 6.3 46 331-377 166-212 (350)
320 TIGR00853 pts-lac PTS system, 73.3 8 0.00017 31.7 5.1 54 336-412 5-58 (95)
321 PRK08945 putative oxoacyl-(acy 72.9 15 0.00032 34.7 7.8 82 331-414 9-102 (247)
322 PF04031 Las1: Las1-like ; In 71.8 25 0.00054 31.6 8.4 37 187-236 84-120 (154)
323 PF05148 Methyltransf_8: Hypot 71.4 8.1 0.00017 36.6 5.2 59 331-410 70-128 (219)
324 PRK06914 short chain dehydroge 71.1 19 0.00042 34.6 8.3 84 334-418 3-95 (280)
325 COG4301 Uncharacterized conser 70.0 25 0.00055 34.2 8.3 92 327-419 72-166 (321)
326 PRK07523 gluconate 5-dehydroge 69.8 26 0.00057 33.2 8.8 80 333-415 9-98 (255)
327 KOG4174 Uncharacterized conser 69.8 69 0.0015 31.3 11.2 85 333-420 56-153 (282)
328 PRK07831 short chain dehydroge 69.5 23 0.00051 33.7 8.4 80 333-413 16-106 (262)
329 COG5379 BtaA S-adenosylmethion 69.0 11 0.00024 37.4 5.8 68 309-379 38-106 (414)
330 PRK07576 short chain dehydroge 68.9 21 0.00045 34.3 7.9 77 333-412 8-94 (264)
331 PRK06139 short chain dehydroge 68.7 26 0.00057 35.3 8.8 83 333-418 6-98 (330)
332 PRK07666 fabG 3-ketoacyl-(acyl 68.5 24 0.00053 33.0 8.1 79 334-415 7-95 (239)
333 PRK07814 short chain dehydroge 68.3 25 0.00055 33.6 8.3 77 333-412 9-95 (263)
334 COG0863 DNA modification methy 68.2 12 0.00027 36.6 6.3 50 331-383 220-269 (302)
335 PRK05599 hypothetical protein; 68.0 22 0.00048 33.8 7.8 75 336-412 2-85 (246)
336 PRK08703 short chain dehydroge 66.6 22 0.00047 33.4 7.4 79 333-413 5-96 (239)
337 PRK07774 short chain dehydroge 66.6 53 0.0012 30.8 10.1 80 333-415 5-94 (250)
338 PRK07062 short chain dehydroge 66.5 33 0.00071 32.7 8.7 81 333-414 7-97 (265)
339 cd08254 hydroxyacyl_CoA_DH 6-h 66.4 21 0.00045 35.2 7.5 50 330-385 162-212 (338)
340 COG2961 ComJ Protein involved 66.1 17 0.00037 35.3 6.3 81 331-418 87-170 (279)
341 TIGR03451 mycoS_dep_FDH mycoth 65.8 19 0.00042 36.3 7.2 51 329-384 172-223 (358)
342 PRK06172 short chain dehydroge 65.6 31 0.00068 32.6 8.3 76 334-412 7-92 (253)
343 PRK12939 short chain dehydroge 65.5 30 0.00064 32.4 8.1 78 333-413 6-93 (250)
344 PLN02662 cinnamyl-alcohol dehy 65.2 49 0.0011 32.5 10.0 81 334-415 4-87 (322)
345 PRK12429 3-hydroxybutyrate deh 65.0 31 0.00066 32.5 8.1 78 334-414 4-91 (258)
346 KOG3350 Uncharacterized conser 64.6 8.7 0.00019 35.4 3.8 96 313-421 52-152 (217)
347 PRK09590 celB cellobiose phosp 64.2 18 0.0004 30.2 5.5 53 336-410 3-56 (104)
348 PF05206 TRM13: Methyltransfer 64.0 14 0.0003 36.2 5.5 66 332-398 17-86 (259)
349 PRK07533 enoyl-(acyl carrier p 63.2 64 0.0014 30.8 10.1 78 333-413 9-97 (258)
350 PRK07677 short chain dehydroge 63.2 39 0.00085 31.9 8.5 78 334-414 1-88 (252)
351 PRK12384 sorbitol-6-phosphate 62.9 39 0.00085 32.0 8.5 80 334-414 2-91 (259)
352 PRK10310 PTS system galactitol 62.3 23 0.00051 28.9 5.8 53 340-413 7-59 (94)
353 PRK07097 gluconate 5-dehydroge 62.2 45 0.00097 31.9 8.8 81 333-416 9-99 (265)
354 cd08237 ribitol-5-phosphate_DH 62.2 15 0.00032 37.1 5.5 47 330-376 160-207 (341)
355 PRK07063 short chain dehydroge 61.9 48 0.001 31.5 8.9 78 334-412 7-94 (260)
356 PRK08217 fabG 3-ketoacyl-(acyl 61.8 40 0.00087 31.5 8.3 78 333-413 4-91 (253)
357 PRK05855 short chain dehydroge 61.7 39 0.00085 36.1 9.1 84 333-419 314-407 (582)
358 PRK05867 short chain dehydroge 61.6 40 0.00086 31.9 8.2 78 333-413 8-95 (253)
359 TIGR03201 dearomat_had 6-hydro 61.2 21 0.00045 36.0 6.5 50 329-384 162-212 (349)
360 PRK09424 pntA NAD(P) transhydr 61.2 18 0.0004 38.9 6.3 100 272-376 99-206 (509)
361 cd05565 PTS_IIB_lactose PTS_II 60.9 19 0.00041 29.9 5.0 54 336-412 2-55 (99)
362 PRK06940 short chain dehydroge 60.8 33 0.00072 33.2 7.6 75 336-414 4-86 (275)
363 KOG2352 Predicted spermine/spe 60.7 4.2 9.1E-05 43.0 1.3 82 334-417 296-383 (482)
364 KOG0919 C-5 cytosine-specific 60.6 14 0.00031 35.7 4.7 93 335-433 4-98 (338)
365 PF01488 Shikimate_DH: Shikima 60.6 54 0.0012 28.3 8.2 79 331-419 9-87 (135)
366 PRK07904 short chain dehydroge 60.5 28 0.00061 33.3 7.0 77 333-411 7-94 (253)
367 PRK05786 fabG 3-ketoacyl-(acyl 60.4 45 0.00099 31.0 8.3 77 333-413 4-90 (238)
368 PRK09880 L-idonate 5-dehydroge 60.2 37 0.00081 34.0 8.1 51 330-385 166-217 (343)
369 PLN02989 cinnamyl-alcohol dehy 60.1 25 0.00055 34.7 6.8 79 333-412 4-85 (325)
370 PRK06197 short chain dehydroge 60.0 1.3E+02 0.0028 29.4 11.8 80 333-413 15-104 (306)
371 PRK09186 flagellin modificatio 59.8 91 0.002 29.3 10.4 77 334-412 4-91 (256)
372 PRK10309 galactitol-1-phosphat 59.4 38 0.00083 33.9 8.0 51 329-384 156-207 (347)
373 PF07942 N2227: N2227-like pro 58.8 49 0.0011 32.6 8.3 44 333-379 56-99 (270)
374 PF05430 Methyltransf_30: S-ad 58.6 15 0.00032 31.8 4.1 46 387-440 33-78 (124)
375 PRK09135 pteridine reductase; 57.9 96 0.0021 28.8 10.1 79 333-413 5-94 (249)
376 PRK07326 short chain dehydroge 57.6 33 0.00073 31.9 6.9 76 333-412 5-90 (237)
377 PLN02896 cinnamyl-alcohol dehy 57.4 93 0.002 31.2 10.5 81 334-418 10-93 (353)
378 PRK08339 short chain dehydroge 56.9 64 0.0014 30.9 8.9 77 334-412 8-93 (263)
379 PRK09291 short chain dehydroge 56.9 56 0.0012 30.8 8.3 76 335-413 3-82 (257)
380 PRK08114 cystathionine beta-ly 56.8 38 0.00082 35.3 7.6 89 330-420 73-163 (395)
381 PRK07109 short chain dehydroge 56.4 70 0.0015 32.1 9.3 80 333-415 7-96 (334)
382 PF02636 Methyltransf_28: Puta 55.9 14 0.00031 35.6 4.1 47 335-381 20-73 (252)
383 COG3510 CmcI Cephalosporin hyd 55.6 13 0.00028 34.8 3.4 59 333-397 69-130 (237)
384 COG0300 DltE Short-chain dehyd 55.5 1.3E+02 0.0029 29.5 10.6 91 333-429 5-106 (265)
385 PF02086 MethyltransfD12: D12 55.5 16 0.00036 34.9 4.4 40 333-375 20-59 (260)
386 PRK12826 3-ketoacyl-(acyl-carr 55.3 1.6E+02 0.0035 27.2 11.3 80 334-416 6-95 (251)
387 PLN02253 xanthoxin dehydrogena 54.9 1.1E+02 0.0024 29.4 10.2 76 334-413 18-103 (280)
388 PRK05876 short chain dehydroge 54.8 59 0.0013 31.5 8.3 79 333-414 5-93 (275)
389 TIGR03589 PseB UDP-N-acetylglu 54.7 74 0.0016 31.7 9.2 75 334-413 4-83 (324)
390 PRK06196 oxidoreductase; Provi 54.6 42 0.0009 33.2 7.3 76 333-415 25-110 (315)
391 KOG1197 Predicted quinone oxid 54.6 39 0.00085 33.2 6.6 66 325-395 138-204 (336)
392 cd08294 leukotriene_B4_DH_like 54.4 38 0.00082 33.3 7.0 52 328-385 138-191 (329)
393 TIGR02415 23BDH acetoin reduct 54.0 46 0.00099 31.3 7.2 81 337-420 3-93 (254)
394 PRK07454 short chain dehydroge 53.9 58 0.0012 30.4 7.8 76 334-412 6-91 (241)
395 PRK08267 short chain dehydroge 53.4 56 0.0012 31.0 7.8 75 336-415 3-88 (260)
396 KOG2425 Nuclear protein involv 52.8 55 0.0012 34.8 7.7 36 188-236 106-141 (599)
397 PRK05717 oxidoreductase; Valid 52.8 53 0.0011 31.1 7.4 76 334-415 10-95 (255)
398 KOG2920 Predicted methyltransf 52.7 11 0.00025 37.1 2.7 38 333-372 116-153 (282)
399 COG1748 LYS9 Saccharopine dehy 52.7 30 0.00065 36.0 5.9 72 335-413 2-77 (389)
400 cd08239 THR_DH_like L-threonin 52.7 48 0.0011 32.9 7.5 52 327-385 157-211 (339)
401 cd08281 liver_ADH_like1 Zinc-d 52.6 45 0.00097 33.9 7.3 52 329-385 187-239 (371)
402 PRK07340 ornithine cyclodeamin 52.4 92 0.002 31.1 9.3 86 322-415 113-199 (304)
403 PRK00258 aroE shikimate 5-dehy 51.9 72 0.0016 31.3 8.3 46 333-380 122-169 (278)
404 PRK06720 hypothetical protein; 51.6 88 0.0019 28.2 8.3 78 333-413 15-102 (169)
405 PLN02740 Alcohol dehydrogenase 51.6 51 0.0011 33.7 7.5 50 329-385 194-246 (381)
406 PRK08085 gluconate 5-dehydroge 51.5 1E+02 0.0022 29.1 9.1 81 333-416 8-98 (254)
407 PF00107 ADH_zinc_N: Zinc-bind 51.3 17 0.00036 30.6 3.3 67 343-418 1-69 (130)
408 PRK05854 short chain dehydroge 51.3 96 0.0021 30.7 9.3 79 334-413 14-102 (313)
409 TIGR02818 adh_III_F_hyde S-(hy 50.6 41 0.00088 34.2 6.6 52 329-385 181-233 (368)
410 TIGR03206 benzo_BadH 2-hydroxy 50.2 92 0.002 29.1 8.6 80 334-416 3-92 (250)
411 cd01065 NAD_bind_Shikimate_DH 50.2 77 0.0017 27.5 7.5 74 333-416 18-93 (155)
412 KOG1562 Spermidine synthase [A 50.0 27 0.00059 34.9 4.8 79 333-412 121-203 (337)
413 TIGR02825 B4_12hDH leukotriene 49.9 58 0.0013 32.1 7.5 52 328-385 133-186 (325)
414 PRK07890 short chain dehydroge 49.7 88 0.0019 29.4 8.4 77 333-412 4-90 (258)
415 cd05285 sorbitol_DH Sorbitol d 49.3 57 0.0012 32.5 7.4 54 327-385 156-210 (343)
416 PRK07231 fabG 3-ketoacyl-(acyl 49.1 83 0.0018 29.4 8.1 78 334-415 5-92 (251)
417 PRK05565 fabG 3-ketoacyl-(acyl 49.1 76 0.0017 29.5 7.8 79 334-415 5-94 (247)
418 PRK06141 ornithine cyclodeamin 48.6 1.1E+02 0.0023 30.7 9.1 62 322-383 113-175 (314)
419 TIGR01963 PHB_DH 3-hydroxybuty 48.5 1.3E+02 0.0028 28.1 9.4 78 336-416 3-90 (255)
420 PRK08263 short chain dehydroge 48.3 67 0.0015 30.9 7.5 79 334-418 3-91 (275)
421 PLN02540 methylenetetrahydrofo 48.2 39 0.00085 36.8 6.2 62 334-396 28-99 (565)
422 TIGR01832 kduD 2-deoxy-D-gluco 47.7 98 0.0021 29.0 8.4 77 333-414 4-90 (248)
423 PRK06113 7-alpha-hydroxysteroi 47.6 1.1E+02 0.0024 28.8 8.8 79 334-415 11-99 (255)
424 cd05188 MDR Medium chain reduc 47.6 52 0.0011 30.8 6.5 44 331-376 132-176 (271)
425 PRK05653 fabG 3-ketoacyl-(acyl 47.3 70 0.0015 29.6 7.3 78 334-414 5-92 (246)
426 PRK08063 enoyl-(acyl carrier p 47.3 95 0.002 29.0 8.2 79 334-415 4-93 (250)
427 PRK08594 enoyl-(acyl carrier p 46.8 76 0.0017 30.3 7.5 76 333-412 6-95 (257)
428 cd08293 PTGR2 Prostaglandin re 46.8 65 0.0014 32.0 7.3 52 330-385 149-204 (345)
429 PRK08277 D-mannonate oxidoredu 46.4 96 0.0021 29.7 8.2 77 334-413 10-96 (278)
430 PRK05993 short chain dehydroge 45.9 82 0.0018 30.4 7.7 70 334-412 4-84 (277)
431 PRK06138 short chain dehydroge 45.9 1.2E+02 0.0026 28.3 8.7 79 334-416 5-93 (252)
432 PF03721 UDPG_MGDP_dh_N: UDP-g 45.9 16 0.00035 33.7 2.5 79 343-428 7-98 (185)
433 cd05278 FDH_like Formaldehyde 45.3 58 0.0013 32.2 6.7 47 329-376 163-210 (347)
434 KOG2793 Putative N2,N2-dimethy 45.2 96 0.0021 30.2 7.8 45 333-380 86-130 (248)
435 PRK05650 short chain dehydroge 45.0 1.1E+02 0.0025 29.1 8.5 75 336-413 2-86 (270)
436 PRK06125 short chain dehydroge 44.9 1.3E+02 0.0029 28.3 8.9 77 334-412 7-89 (259)
437 PRK08340 glucose-1-dehydrogena 44.6 2.2E+02 0.0048 26.8 10.4 74 336-413 2-85 (259)
438 PRK08278 short chain dehydroge 44.5 90 0.002 30.0 7.7 81 333-416 5-102 (273)
439 cd08238 sorbose_phosphate_red 44.3 42 0.00091 34.8 5.6 49 329-377 171-222 (410)
440 COG0604 Qor NADPH:quinone redu 44.2 65 0.0014 32.5 6.8 60 329-394 138-199 (326)
441 PRK09072 short chain dehydroge 44.1 1.5E+02 0.0032 28.2 9.1 77 334-414 5-90 (263)
442 PRK07067 sorbitol dehydrogenas 44.1 96 0.0021 29.3 7.7 75 334-414 6-90 (257)
443 PRK08415 enoyl-(acyl carrier p 43.7 1.1E+02 0.0024 29.6 8.2 77 334-413 5-92 (274)
444 cd08232 idonate-5-DH L-idonate 43.1 93 0.002 30.7 7.8 45 330-375 162-207 (339)
445 KOG1201 Hydroxysteroid 17-beta 43.1 91 0.002 31.2 7.3 76 333-412 37-122 (300)
446 KOG3178 Hydroxyindole-O-methyl 42.6 64 0.0014 32.9 6.3 61 327-395 167-231 (342)
447 PRK06124 gluconate 5-dehydroge 42.6 1.1E+02 0.0024 28.7 7.9 78 333-413 10-97 (256)
448 PRK07478 short chain dehydroge 42.2 1.9E+02 0.0042 27.1 9.5 79 334-415 6-94 (254)
449 cd08255 2-desacetyl-2-hydroxye 42.1 66 0.0014 30.7 6.3 48 328-376 92-140 (277)
450 PRK11524 putative methyltransf 41.8 17 0.00036 36.0 2.0 29 387-415 9-38 (284)
451 PLN03154 putative allyl alcoho 41.7 61 0.0013 32.7 6.2 52 329-385 154-207 (348)
452 TIGR02622 CDP_4_6_dhtase CDP-g 41.4 80 0.0017 31.6 7.0 76 334-413 4-84 (349)
453 PRK05872 short chain dehydroge 41.2 1.2E+02 0.0026 29.7 8.1 78 333-414 8-95 (296)
454 cd06451 AGAT_like Alanine-glyo 41.2 2.1E+02 0.0045 28.5 10.0 97 321-420 37-140 (356)
455 PRK12771 putative glutamate sy 41.2 73 0.0016 34.6 7.1 37 330-367 133-169 (564)
456 cd08261 Zn_ADH7 Alcohol dehydr 41.1 89 0.0019 30.9 7.3 47 327-375 153-200 (337)
457 PRK11908 NAD-dependent epimera 41.0 1E+02 0.0022 30.9 7.7 86 336-429 3-93 (347)
458 cd02042 ParA ParA and ParB of 40.7 38 0.00082 27.4 3.7 13 405-417 40-52 (104)
459 PRK08589 short chain dehydroge 40.5 1.4E+02 0.0031 28.5 8.5 77 334-414 6-92 (272)
460 PRK12859 3-ketoacyl-(acyl-carr 40.5 1.7E+02 0.0037 27.7 8.9 82 333-416 5-108 (256)
461 PRK07791 short chain dehydroge 40.4 1.9E+02 0.004 28.1 9.3 78 333-413 5-101 (286)
462 PRK09496 trkA potassium transp 40.3 71 0.0015 33.3 6.6 73 334-414 231-307 (453)
463 cd08300 alcohol_DH_class_III c 40.1 1.2E+02 0.0025 30.8 8.0 52 329-385 182-234 (368)
464 KOG3201 Uncharacterized conser 40.0 30 0.00065 31.6 3.1 49 333-381 29-77 (201)
465 PRK08574 cystathionine gamma-s 39.9 1.3E+02 0.0028 31.0 8.4 85 334-420 68-153 (385)
466 PF02302 PTS_IIB: PTS system, 39.8 38 0.00082 26.7 3.5 53 340-413 4-56 (90)
467 PRK08264 short chain dehydroge 39.5 87 0.0019 29.1 6.6 69 334-412 6-81 (238)
468 PLN00198 anthocyanidin reducta 39.4 76 0.0017 31.6 6.5 81 329-412 4-88 (338)
469 PF00106 adh_short: short chai 39.4 1.1E+02 0.0023 26.6 6.8 81 337-420 3-96 (167)
470 cd08230 glucose_DH Glucose deh 38.5 60 0.0013 32.6 5.6 48 331-384 170-221 (355)
471 TIGR02371 ala_DH_arch alanine 38.2 2.3E+02 0.0051 28.5 9.7 82 322-410 116-198 (325)
472 TIGR01500 sepiapter_red sepiap 38.1 1.2E+02 0.0025 28.8 7.3 61 336-397 2-67 (256)
473 PRK06198 short chain dehydroge 38.0 1.5E+02 0.0033 27.8 8.1 80 333-415 5-95 (260)
474 PF09848 DUF2075: Uncharacteri 38.0 53 0.0012 33.4 5.1 74 337-411 5-90 (352)
475 TIGR02822 adh_fam_2 zinc-bindi 37.9 85 0.0019 31.3 6.6 52 328-385 160-212 (329)
476 PRK15116 sulfur acceptor prote 37.9 1.7E+02 0.0036 28.9 8.3 77 333-410 29-127 (268)
477 cd01078 NAD_bind_H4MPT_DH NADP 37.8 1.5E+02 0.0033 27.0 7.8 46 333-379 27-73 (194)
478 PRK05866 short chain dehydroge 37.8 1.3E+02 0.0028 29.4 7.8 76 334-412 40-125 (293)
479 PRK03562 glutathione-regulated 37.6 49 0.0011 36.6 5.1 67 334-410 400-470 (621)
480 PRK08303 short chain dehydroge 37.5 1.6E+02 0.0036 29.0 8.5 77 333-412 7-103 (305)
481 PRK10669 putative cation:proto 37.4 48 0.001 36.0 4.9 69 335-413 418-490 (558)
482 PRK10416 signal recognition pa 37.3 85 0.0018 31.6 6.4 79 333-413 113-205 (318)
483 PRK06079 enoyl-(acyl carrier p 37.3 1.1E+02 0.0024 29.0 7.0 76 333-413 6-92 (252)
484 PRK06482 short chain dehydroge 37.2 93 0.002 29.8 6.5 75 336-416 4-88 (276)
485 PRK12748 3-ketoacyl-(acyl-carr 37.1 1.5E+02 0.0032 28.0 7.8 76 334-412 5-103 (256)
486 PRK07775 short chain dehydroge 37.0 2.1E+02 0.0046 27.4 9.0 77 335-414 11-97 (274)
487 COG0169 AroE Shikimate 5-dehyd 37.0 1.8E+02 0.0038 28.9 8.4 51 333-383 125-175 (283)
488 cd08236 sugar_DH NAD(P)-depend 36.7 1.3E+02 0.0029 29.6 7.8 47 328-375 154-201 (343)
489 cd08277 liver_alcohol_DH_like 36.7 1.2E+02 0.0026 30.7 7.5 50 329-385 180-232 (365)
490 PRK07792 fabG 3-ketoacyl-(acyl 36.7 1.8E+02 0.0039 28.6 8.6 79 333-414 11-99 (306)
491 PRK07806 short chain dehydroge 36.7 1.8E+02 0.0038 27.2 8.3 77 334-413 6-93 (248)
492 PRK09242 tropinone reductase; 36.7 1.6E+02 0.0036 27.6 8.1 79 334-413 9-97 (257)
493 KOG3045 Predicted RNA methylas 36.6 75 0.0016 31.3 5.4 61 327-410 173-234 (325)
494 PRK07060 short chain dehydroge 36.6 1.2E+02 0.0026 28.2 7.0 78 333-418 8-91 (245)
495 PRK06505 enoyl-(acyl carrier p 36.2 1.7E+02 0.0036 28.3 8.1 77 333-412 6-93 (271)
496 PRK07889 enoyl-(acyl carrier p 36.0 91 0.002 29.7 6.2 75 333-412 6-93 (256)
497 cd01075 NAD_bind_Leu_Phe_Val_D 35.7 1.7E+02 0.0036 27.2 7.7 71 333-420 27-98 (200)
498 PLN00015 protochlorophyllide r 35.7 1.1E+02 0.0025 30.0 7.0 71 341-413 3-84 (308)
499 PRK07832 short chain dehydroge 35.6 1.5E+02 0.0032 28.3 7.7 75 337-413 3-87 (272)
500 PRK06181 short chain dehydroge 35.1 1.6E+02 0.0035 27.8 7.7 75 335-412 2-86 (263)
No 1
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=7e-72 Score=582.11 Aligned_cols=366 Identities=36% Similarity=0.553 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
.+|++|+++||+++. +.+++.++++. +....++++|++|+++|||||+|++..||++|+++++
T Consensus 2 ~~R~~A~~~L~~i~~-~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 64 (434)
T PRK14901 2 NARQLAWEILQAVAR-GAYADVALERV----------------LRKYPLSGADRALVTELVYGCIRRRRTLDAWIDQLGK 64 (434)
T ss_pred CHHHHHHHHHHHHHc-CCchHHHHHHH----------------HHhcCCChhHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Confidence 379999999999988 58887776542 2234578899999999999999999999999999986
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCC-CCCCcCcCCc
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNS-LPLPKLEGND 216 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~-~~~~~~~~~~ 216 (451)
|++.++++++++|||+|+|||+|++ +|++++|||+|++||++++++.++|||||||++.+..+... ...+
T Consensus 65 --~~~~~l~~~~r~iLrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~------ 136 (434)
T PRK14901 65 --KPAHKQPPDLRWLLHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLP------ 136 (434)
T ss_pred --CChhhcCHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCC------
Confidence 6678899999999999999999987 89999999999999999998999999999999999643210 0111
Q ss_pred hHHHHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEE
Q 012998 217 RAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIR 296 (451)
Q Consensus 217 ~~~~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~ 296 (451)
.....++++.||+|+||+++|.+.||.+++++++++++++||+++|||+++ ++++++.+.|++.|+.+++.+++++++.
T Consensus 137 ~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 215 (434)
T PRK14901 137 EDPIERLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGITATPIPGLPQGLR 215 (434)
T ss_pred cChHHHHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCCceEECCCCCCeEE
Confidence 113467899999999999999999999999999999999999999999999 7999999999999999999999999999
Q ss_pred EeCCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 297 VKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 297 ~~~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
+......+..++.|++|++++||++|++++.++++++|++|||+|||||+||+++++.+++.|+|+|+|+++.|++.+++
T Consensus 216 ~~~~~~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~ 295 (434)
T PRK14901 216 LTGNPGSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQE 295 (434)
T ss_pred ecCCCCccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHH
Confidence 87532246778899999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHcCCCceEEEEcCccccccc---cCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 377 TAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 377 ~~~~~g~~~~I~~~~~Da~~~~~---~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
|++++|+.+ |+++++|+..+.. ...++||.|++||||||+|+++|+||++|+++++++.+++.+|.+||.+|++
T Consensus 296 n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 296 NAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred HHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 8999999987752 1246899999999999999999999999999999999999999999999863
No 2
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.5e-70 Score=568.44 Aligned_cols=350 Identities=29% Similarity=0.460 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
.+|++|+++|++++..+.+++.+++.. +. .++++|++|+++|||||+|++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~~~~ 65 (431)
T PRK14903 4 NVRLLAYRLLRKYEKEKFIFREDVDSV----------------LS--FLDDKDRRFFKELVWGVVRKEELLDWYINQLLK 65 (431)
T ss_pred CHHHHHHHHHHHHHhCCCchHHHHHHH----------------HH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999998888877541 12 589999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCch
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (451)
+ | ++++++++|||+|+|||+|++ +|++++|||+|+|||++ +.++|||||||++.++..
T Consensus 66 ~-~---~l~~~~r~iLr~~~yel~~~~~~p~~aavneaV~lak~~---~~~~fVNaVLr~~~r~~~-------------- 124 (431)
T PRK14903 66 K-K---DIPPAVRVALRMGAYQLLFMNSVPDYAAVSETVKLVKNE---NFKKLVNAVLRRLRTVPE-------------- 124 (431)
T ss_pred C-C---CCCHHHHHHHHHHHHHHHhccCCCcceeHHHHHHHHhcc---chHHHHHHHHHHHHHhhc--------------
Confidence 6 5 599999999999999999998 79999999999999975 578999999999998511
Q ss_pred HHHHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012998 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (451)
Q Consensus 218 ~~~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (451)
.+++++.||+|.||+++|.+.||.+++++++++++++||+++|||+++ ++++++.+.|+..|+.+++++++++++.+
T Consensus 125 --~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 201 (431)
T PRK14903 125 --PKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGTEAVPGKHSPFSLIV 201 (431)
T ss_pred --chhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCCeeEECCCCCceEEE
Confidence 025789999999999999999999999999999999999999999999 79999999999999999999999999888
Q ss_pred eCCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012998 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~ 377 (451)
......+..++.|++|.+++||.+|++++.++++++|++|||+|||||+||+++++.+++.|.|+|+|+++.|++.+++|
T Consensus 202 ~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n 281 (431)
T PRK14903 202 RKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH 281 (431)
T ss_pred cCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHH
Confidence 75323467788999999999999999999999999999999999999999999999998889999999999999999999
Q ss_pred HHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 378 ~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++++|+.+ |.++++|+..++....++||+|++||||||+|+++++||++|+++++++.+|..+|++||.+|++
T Consensus 282 ~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 354 (431)
T PRK14903 282 AKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWK 354 (431)
T ss_pred HHHcCCCe-EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999986 89999999887543356899999999999999999999999999999999999999999999863
No 3
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=1.6e-67 Score=548.29 Aligned_cols=354 Identities=31% Similarity=0.402 Sum_probs=313.6
Q ss_pred HHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 012998 61 RAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDE 140 (451)
Q Consensus 61 R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~~~ 140 (451)
|+.|+++||+++.++.+++.+.+. ...++++|++|+++|||||++|+..||++|+++++
T Consensus 1 R~~A~~~L~~~~~~~~~~~~~~~~-------------------~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~-- 59 (426)
T TIGR00563 1 RSIAAQALEQLEQGQSLSNLLPPL-------------------QQKVSDQDRALLQELCFGVLRTLSQLDWLIKKLMD-- 59 (426)
T ss_pred CHHHHHHHHHHHcCCchHHHHHhh-------------------hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC--
Confidence 789999999999999888776642 12478899999999999999999999999999986
Q ss_pred CCCCcccHHHHHHHHHHHHHHHh-cCCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCchHH
Q 012998 141 KTFSSMEPLLLQILRIGFYEIVK-LDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219 (451)
Q Consensus 141 ~~~~~l~~~~~~iLrl~~yell~-~~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~ 219 (451)
|++.+++++++ +||+++||++| +++|++++|||+|+|||+|++++.++|||||||++.++.+. .. ..
T Consensus 60 ~~~~~l~~~~~-~L~~~~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~----~~-------~~ 127 (426)
T TIGR00563 60 RPMKGKPRTVH-YLILVGLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEE----LL-------AE 127 (426)
T ss_pred CCccccCHHHH-HHHHHHHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchh----hc-------ch
Confidence 67788999877 88888888766 57999999999999999999999999999999999985321 00 12
Q ss_pred HHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeC
Q 012998 220 ARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKT 299 (451)
Q Consensus 220 ~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~ 299 (451)
.+++++.||+|.|++++|.+.|+ +++++++++++++||+|+|||+.+ ++++++.+.|++.|+..++++++++++++..
T Consensus 128 ~~~l~~~~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 205 (426)
T TIGR00563 128 FNALDARYLHPEWLVKRLQKAYP-GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGMKGFPHDLAPDAVRLET 205 (426)
T ss_pred hHhHHHHcCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCCceeeCCCCCCeEEECC
Confidence 45689999999999999999996 557799999999999999999999 7999999999999999999999999998865
Q ss_pred CCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q 012998 300 GLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (451)
Q Consensus 300 ~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~ 379 (451)
+. .+..++.|++|++++||++|++++..+++++|++|||+|||||+||+++++.++ .|+|+|+|+++.+++.+++|++
T Consensus 206 ~~-~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 206 PA-AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CC-CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHH
Confidence 42 467788999999999999999999999999999999999999999999999987 6899999999999999999999
Q ss_pred HcCCCceEEEEcCcccccccc-CCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 380 LHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 380 ~~g~~~~I~~~~~Da~~~~~~-~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++|+...+++..+|....... ..++||.|++||||||+|+++++||++|+++++++.+++.+|++||++|++
T Consensus 284 r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~ 356 (426)
T TIGR00563 284 RLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWP 356 (426)
T ss_pred HcCCCeEEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999974455577787654321 246799999999999999999999999999999999999999999999863
No 4
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2.4e-67 Score=546.95 Aligned_cols=356 Identities=30% Similarity=0.443 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
.+|++|+++||+++.++.+++.++++. ++ .+++.|++|+++|||||++|+..||++|.++++
T Consensus 3 ~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~--~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~~~~ 64 (427)
T PRK10901 3 NLRALAAAAILQVVDQGQSLSAALPAL----------------QQ--KVSDKDRALLQELCYGVLRRLPRLEWLIAQLLA 64 (427)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHH----------------Hh--hCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 479999999999999999998877641 12 478899999999999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCchH
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRA 218 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~ 218 (451)
|++.++++++++|||||+|||+|+++|++++|||+|+|||+|++++.++|||||||++.+..+. .+. .
T Consensus 65 --~~~~~l~~~~r~iLrla~yell~~~iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~----~~~---~--- 132 (427)
T PRK10901 65 --KPLKGKQRIVHALLLVGLYQLLYTRIPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEE----LLA---E--- 132 (427)
T ss_pred --CCccccCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhh----hhh---h---
Confidence 6788999999999999999999999999999999999999999999999999999999985331 110 0
Q ss_pred HHHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEe
Q 012998 219 QARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVK 298 (451)
Q Consensus 219 ~~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~ 298 (451)
....+++.||+|.||+++|.+.|| +++.+++++++++||+++|||+++ ++++++.+.|++.|+.+++++++++++.+.
T Consensus 133 ~~~~~~~~~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (427)
T PRK10901 133 LQADPVARYNHPSWLIKRLKKAYP-EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGIEAFPHAVGPDAIRLE 210 (427)
T ss_pred hhhchHhHhcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCCceeecCCCCCeEEEC
Confidence 123578999999999999999996 678889999999999999999999 799999999999999999999999999887
Q ss_pred CCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012998 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (451)
Q Consensus 299 ~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~ 378 (451)
.+. .+..++.|++|.+++||.+|++++..+++++|++|||+|||||++|+++++.+++ ++|+|+|+++.+++.+++|+
T Consensus 211 ~~~-~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~ 288 (427)
T PRK10901 211 TPV-PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENL 288 (427)
T ss_pred CCC-CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHH
Confidence 542 4677889999999999999999999999999999999999999999999998754 89999999999999999999
Q ss_pred HHcCCCceEEEEcCcccccccc-CCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhh
Q 012998 379 KLHQVNSVIRTIHADLRTFADN-STVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450 (451)
Q Consensus 379 ~~~g~~~~I~~~~~Da~~~~~~-~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~ 450 (451)
+++|+. ++++++|+..+... ..++||.|++||||||+|+++++||++|.++++++.++..+|.++|.+|.
T Consensus 289 ~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~ 359 (427)
T PRK10901 289 QRLGLK--ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALW 359 (427)
T ss_pred HHcCCC--eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 999985 57889999875432 24679999999999999999999999999999999999999999999986
No 5
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=7.7e-67 Score=545.82 Aligned_cols=362 Identities=33% Similarity=0.544 Sum_probs=319.9
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
.+|+.|+++||+++.++.+++.++.+. ++...++++|++|+++||||++|++..||++|+++++
T Consensus 3 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~~~~ 66 (445)
T PRK14904 3 TARELALQVLQELETGERKSDTLLHRM----------------LERSSLERNDRALATELVNGVLRYRLQLDFIISRFYH 66 (445)
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 479999999999999999988877642 2234588999999999999999999999999999996
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCch
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (451)
|++.+++++++++||+|+|||+|++ +|++++|||+|+|||+|+++++++|||||||+++++........+. .
T Consensus 67 --~~~~rl~~~~r~iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~-----~ 139 (445)
T PRK14904 67 --HDLEKAAPVLKNILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKG-----M 139 (445)
T ss_pred --CChhhCCHHHHHHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccc-----c
Confidence 7889999999999999999999986 8999999999999999999999999999999999964221111111 1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012998 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (451)
Q Consensus 218 ~~~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (451)
...+++++.||+|.||+++|.+.||.+++.+++++++++|++++|||+++ .+++++.+.|...|+++++.++ + .+.+
T Consensus 140 ~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~~~~~~~-~-~~~~ 216 (445)
T PRK14904 140 PEAERLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVTFEKSGL-P-NFFL 216 (445)
T ss_pred chHHHHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCceEEcCc-c-eEEE
Confidence 23457999999999999999999999999999999999999999999999 7999999999999998887764 3 3444
Q ss_pred eCCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012998 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~ 377 (451)
.... ....+.|..|.+++||+++++++.++++.+|++|||+|||||++|+++++.+++.+.|+|+|+++.+++.++++
T Consensus 217 ~~~~--~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 294 (445)
T PRK14904 217 SKDF--SLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSH 294 (445)
T ss_pred eccc--cccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 4321 22236899999999999999999999999999999999999999999999988788999999999999999999
Q ss_pred HHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 378 ~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++++|+.+ |+++++|+..+.. .+.||+|++||||||+|+++|+||++|.++++++..+..+|.+||.+|++
T Consensus 295 ~~~~g~~~-v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 365 (445)
T PRK14904 295 ASALGITI-IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAAS 365 (445)
T ss_pred HHHhCCCe-EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999975 8999999988652 36899999999999999999999999999999999999999999999863
No 6
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=8.8e-67 Score=545.61 Aligned_cols=363 Identities=34% Similarity=0.583 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 59 PHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
++|+.|+++||+++.++.+++.+++.. ++...++++|+.|+++||||+++++..||++|+++++
T Consensus 4 ~~R~~A~~~L~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~~~ 67 (444)
T PRK14902 4 NARELALEVLIKVENNGAYSNIALNKV----------------LKKSELSDKDKALLTELVYGTIQRKLTLDYYLAPFIK 67 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence 589999999999999999988877642 2234588999999999999999999999999999997
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCch
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDR 217 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~ 217 (451)
+ ++++++++++|||+|+|||+|++ +|++++|||+|++||+|+++++++||||||+++.+..... .+.. .
T Consensus 68 --~-~~~l~~~~r~iLrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~---~~~~----~ 137 (444)
T PRK14902 68 --K-RKKLDPWVRNLLRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPD---IDEI----K 137 (444)
T ss_pred --h-hhhCCHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccc---cccc----c
Confidence 4 78999999999999999999986 9999999999999999999999999999999999853110 1111 1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE
Q 012998 218 AQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV 297 (451)
Q Consensus 218 ~~~~~la~~~s~P~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~ 297 (451)
+....+++.||+|.|++++|.+.||.+++.+++++++.+||+|+|+|+.+ ++++++.+.|++.|+.++++++.|+++.+
T Consensus 138 ~~~~~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 216 (444)
T PRK14902 138 DPVKRLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGYEVEESLLSPEALVI 216 (444)
T ss_pred CHHHHHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCceeEEcCCCCCeEEE
Confidence 23567999999999999999999999999999999999999999999999 78999999999999999999999999998
Q ss_pred eCCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012998 298 KTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~ 377 (451)
+. ..+..++.|++|.+++||.+|++++.++++++|++|||+|||||++|++++..+++.++|+|+|+++.+++.+++|
T Consensus 217 ~~--~~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n 294 (444)
T PRK14902 217 EK--GNIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEEN 294 (444)
T ss_pred eC--CCcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 75 2477889999999999999999999999999999999999999999999999987779999999999999999999
Q ss_pred HHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 378 AKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 378 ~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++++|+.+ |.++++|+..+.....+.||+|++||||||+|+++++|+++|.++++++..+..+|.++|.+|++
T Consensus 295 ~~~~g~~~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 367 (444)
T PRK14902 295 AKRLGLTN-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQ 367 (444)
T ss_pred HHHcCCCe-EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999987 99999999876432336899999999999999999999999999999999999999999999863
No 7
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-52 Score=419.08 Aligned_cols=272 Identities=37% Similarity=0.545 Sum_probs=237.5
Q ss_pred CCchhhHHHHHHHHHH-hcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCchHHHHHHHHhhCChHHHHHHHHHhhCHH
Q 012998 166 MPPYAVVDENVRLAKV-ALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (451)
Q Consensus 166 ~p~~a~inEaV~Lak~-~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wl~~~~~~~~g~e 244 (451)
+|++++++++|+.++. +......+|+|++|+.+.+......... . ... ..|++|+|++++|.+.||.+
T Consensus 1 ~~~~a~~~~~~~~a~~~~~~~~~~~~~n~~lr~~~r~~~~~~~~~---~------~~~--~~~~~p~w~~~~~~~~~~~~ 69 (355)
T COG0144 1 VPPHAAVDETVEAAKERLGKDRAAKFVNAVLRRLERSEEALLEEI---L------RPA--FRYSHPEWLVEKLPDALGED 69 (355)
T ss_pred CCcHHHHHHHHHHHHhcccchhhhhhhhhhHhhhhhccchhhhhh---h------ccc--ccccCcHHHHHHHHHHcChH
Confidence 5889999999999995 4667789999999999988654321110 0 001 57999999999999999998
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCCCcchhchhhhhcCceeeecchhhh
Q 012998 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGL 324 (451)
Q Consensus 245 ~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vQd~as~l 324 (451)
+++.++.+++.+++.++|||+++ .+++++.+.|+..++...+..+.+.++++.... .+..++.|.+|+|++||++||+
T Consensus 70 ~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~G~~~vQd~sS~l 147 (355)
T COG0144 70 EAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLDEKPWVLDEVLRIEASG-PIGRLPEFAEGLIYVQDEASQL 147 (355)
T ss_pred HHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhcccccccCCccccEEEecCCC-CcccChhhhceEEEEcCHHHHH
Confidence 89999999999999999999999 899999999999888766665556677776543 5667789999999999999999
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCC-
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST- 402 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~-V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~- 402 (451)
++.+|+++||++|||+||||||||+|+|++|.+.|. |+|+|+++.|++.+++|++|+|+.| +.+++.|++.++....
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPG 226 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccc
Confidence 999999999999999999999999999999998655 5999999999999999999999998 7788889887654332
Q ss_pred -CCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 403 -VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 403 -~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++||+||+||||||+|++|||||++|+++++++.+|+.+|++||++|++
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~ 276 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALK 276 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 2599999999999999999999999999999999999999999999974
No 8
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=3.8e-47 Score=395.62 Aligned_cols=221 Identities=24% Similarity=0.279 Sum_probs=206.2
Q ss_pred CChHHHHHHHHHhhCH-HHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCC---Ccc
Q 012998 228 SHPVWMVRRWTKYLGQ-EEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTG---LQN 303 (451)
Q Consensus 228 s~P~wl~~~~~~~~g~-e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~---~~~ 303 (451)
.+|.||+++|.+.||. +++++++++++++++.+||||++| ++.+++.+.|++.|+.+++.+|+++++.+..+ ...
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~ 81 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALP 81 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCC
Confidence 4899999999999997 689999999999999999999999 79999999999999999999999999988642 123
Q ss_pred hhchhhhhcCceeeecchhhhhhhhh--CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc
Q 012998 304 VIQAGLLKEGLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (451)
Q Consensus 304 ~~~~~~~~~G~~~vQd~as~l~~~~l--~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~ 381 (451)
+..++.|..|.|++||++||+++.+| +++||++|||+||||||||+++|++|++.|.|+|+|+++.|++.+++|++++
T Consensus 82 ~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~ 161 (470)
T PRK11933 82 LGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC 161 (470)
T ss_pred cccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 67788999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhh
Q 012998 382 QVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450 (451)
Q Consensus 382 g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~ 450 (451)
|+.| |.+.+.|+..+.....+.||+||+||||||+|++||+|+++|.|+++++.+++.+|++||++|+
T Consensus 162 G~~n-v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~ 229 (470)
T PRK11933 162 GVSN-VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAF 229 (470)
T ss_pred CCCe-EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 9987 8888999987765445689999999999999999999999999999999999999999999986
No 9
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=342.82 Aligned_cols=345 Identities=30% Similarity=0.345 Sum_probs=270.9
Q ss_pred CCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhc
Q 012998 85 GKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164 (451)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~~~~~~~~l~~~~~~iLrl~~yell~~ 164 (451)
..+++++.+.+...+-++...+++..+... .+-++++++++...+........+.-......+..+.+++ +...+
T Consensus 13 ~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~l~lp~~~----~~~~~ 87 (460)
T KOG1122|consen 13 LPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEGDPLLLPTLE----EEEEK 87 (460)
T ss_pred CcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhccccccccccCcccc----ccccc
Confidence 334445555554444334455667777777 8899999999998887777654432233335555555555 44444
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccCCCCCCCcCcCCchHHHHHHHHhhCChHHHHHHHHHhhCHH
Q 012998 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRRWTKYLGQE 244 (451)
Q Consensus 165 ~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wl~~~~~~~~g~e 244 (451)
..+| +.+.|.+...-..+..+.|.|.....-.+... . ..-...++..|++-.++...+.+.+...
T Consensus 88 ~~~P---~L~~v~~~~~~~~~~l~dfk~l~~~~~~~~~~--~----------~~l~~~~~~~y~y~~~l~~~~~e~~~~~ 152 (460)
T KOG1122|consen 88 DSVP---DLQNVDLRIVELVPVLGDFKNLKEPGRLRSEY--C----------GQLKKDGAHYYAYGVFLAEKLMELFPLV 152 (460)
T ss_pred ccCC---ccchhhHHhhhhhhhhcchhcccccccchhhH--H----------HHHHhcccceechHHHHHHHhcccccHH
Confidence 4333 55667666665555555666543322211110 0 0112346788999999999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCcee-ccCCCceEEEeCCCcchhchhhhhcCceeeecchhh
Q 012998 245 EAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHEL-SLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAG 323 (451)
Q Consensus 245 ~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vQd~as~ 323 (451)
++.++++++..++|+++|.||+| +-+-++...|...|+...+ ..|..-++++..+..++..++.|..|++.+|+.+|.
T Consensus 153 ev~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS~ 231 (460)
T KOG1122|consen 153 EVYEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASSF 231 (460)
T ss_pred HHHHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCccc
Confidence 99999999999999999999999 5677788888888876644 558888888877666788889999999999999999
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NST 402 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~ 402 (451)
+++..|+||||++||||||+|||||+|||.+|++.|.|+|+|.+..++..++.|+.++|++| ..+++.|...++. ...
T Consensus 232 Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~ 310 (460)
T KOG1122|consen 232 LPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFP 310 (460)
T ss_pred ceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999998 4567889988763 334
Q ss_pred CCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 403 VKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
++||+||+||||||+|++.|.+.++|.++.+++.++..+|++||.+|..
T Consensus 311 ~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~ 359 (460)
T KOG1122|consen 311 GSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAID 359 (460)
T ss_pred cccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999963
No 10
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=5.6e-42 Score=337.77 Aligned_cols=201 Identities=38% Similarity=0.591 Sum_probs=178.5
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEE-eCCCcchhchhhhhcCceeeecchhhhhhh
Q 012998 249 LMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRV-KTGLQNVIQAGLLKEGLCAVQDESAGLVVA 327 (451)
Q Consensus 249 ~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~vQd~as~l~~~ 327 (451)
||+++|.+||+++|||+++ ++++++.+.|++.|+.+++.++.++.+++ ......+..++.|++|+|++||++|++++.
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHH
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccc
Confidence 6889999999999999999 89999999999999999999988888333 222336778899999999999999999999
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcC
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCD 406 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD 406 (451)
+|++++|+.|||+||||||||++++++|++.|.|+|+|++..|+..+++|++++|+.+ +.++..|++.+.... ...||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999997 777779998874322 34699
Q ss_pred EEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 407 ~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
.|++||||||+|+++|+|+++|.++++++++|+.+|++||++|++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 203 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAK 203 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999863
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=1.6e-36 Score=296.80 Aligned_cols=187 Identities=30% Similarity=0.422 Sum_probs=168.8
Q ss_pred EEEcCCCCCCHHHHHHHHhcCCCCceeccCCCceEEEeCCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEee
Q 012998 261 LRANSRKGVTRADLVMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDC 340 (451)
Q Consensus 261 lRvN~~k~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDl 340 (451)
+|||++| ++++++++.|++.|+.+++.+ .+.++.+..+...+..++.|.+|++++||.+|++++.++++++|++|||+
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 6999999 799999999999999887654 45667665432247788899999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCcccc
Q 012998 341 CAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 341 cagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~l 420 (451)
|||||+||+++++++++.|.|+|+|+++.+++.+++|++++|+.+ |.+++.|+..+.. ..+.||+||+||||||+|++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~-~~~~fD~Vl~D~Pcsg~G~~ 156 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGA-AVPKFDAILLDAPCSGEGVI 156 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhh-hccCCCEEEEcCCCCCCccc
Confidence 999999999999999888999999999999999999999999986 8999999987653 23569999999999999999
Q ss_pred ccCCcccccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 421 SKRADLRWNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 421 rr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
+++|+++|.++++++..++.+|++||++|++
T Consensus 157 ~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~ 187 (264)
T TIGR00446 157 RKDPSRKKNWSEEDIQEISALQKELIDSAFD 187 (264)
T ss_pred ccChhhhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999863
No 12
>PRK00202 nusB transcription antitermination protein NusB; Reviewed
Probab=99.94 E-value=1.4e-26 Score=204.72 Aligned_cols=129 Identities=24% Similarity=0.339 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012998 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (451)
Q Consensus 58 ~~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~ 137 (451)
.++|+.|+++||+++..+.+.+.+++.. +....+++.|++|++++|+|+++|+..||++|++++
T Consensus 4 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~~l 67 (137)
T PRK00202 4 RKAREAAVQALYQWELSGNDIAEIIEAQ----------------LLEEQYDKADPAYFRSLVRGVVENQAELDELISPYL 67 (137)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHH----------------HHhcccchhhHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4689999999999999999888776542 122347889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Q 012998 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKD 203 (451)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrl~~yell~~-~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~~ 203 (451)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||+|++++.++|||||||++.+...
T Consensus 68 ~~-~~~~~l~~~~~~iLr~a~~Ell~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~~~ 133 (137)
T PRK00202 68 KD-WTLERLDPVERAILRLALYELLFRDDVPYKVVINEAIELAKKFGDEDSHKFVNGVLDKIAKELR 133 (137)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCcchhHHHHHHHHHHHhh
Confidence 76 999999999999999999999999 699999999999999999999999999999999998643
No 13
>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site. Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....
Probab=99.94 E-value=4.9e-27 Score=206.69 Aligned_cols=125 Identities=26% Similarity=0.437 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhCCCc-------hHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 012998 59 PHRAVSAVRLMRIQFGGAF-------ADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDH 131 (451)
Q Consensus 59 ~~R~~A~~~L~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~ 131 (451)
++|++|+|+||+++.++.. .+..++. . .....++..|++|+++|++|+++|+..||+
T Consensus 2 ~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~--------------~--~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~ 65 (134)
T PF01029_consen 2 KARELALQALYQVEFNDEEDEEEGQFLDEALEE--------------E--LEESELSEEDRAFARELVYGVLRNKEELDA 65 (134)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH--------------H--HHHTTSTHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHccCCchhhhhhhHHHHHhh--------------c--ccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999666554 2222210 0 123568999999999999999999999999
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 012998 132 LICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (451)
Q Consensus 132 ~i~~~~~~~~~~~~l~~~~~~iLrl~~yell~~-~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r 200 (451)
+|++++++ |+++++++++++|||+|+|||+|+ ++|++++|||||++||+|+++++++|||||||+++|
T Consensus 66 ~i~~~~~~-~~~~rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~~~R 134 (134)
T PF01029_consen 66 LISKLLKN-WPLERLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLRRIAR 134 (134)
T ss_dssp HHHHTSTS-STGGGSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHH
T ss_pred HHHHHhcc-CCccccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHHHhhC
Confidence 99998866 999999999999999999999999 699999999999999999999999999999999975
No 14
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=99.94 E-value=1.7e-26 Score=202.24 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=114.5
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012998 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (451)
Q Consensus 58 ~~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~ 137 (451)
+.+|+.|+++||+++.++.+.+.+++.. +....+++.|++|++++|+|+++++..||++|++++
T Consensus 2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~----------------~~~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~~l 65 (130)
T cd00619 2 RRARELAVQALYAWELAPEILAEVVSLL----------------ELLQYKSKKVLPFALKLVRGVLENIEEIDELIEKHL 65 (130)
T ss_pred hHHHHHHHHHHHHHHhcCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3689999999999999998888776542 122346789999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 012998 138 HDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (451)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~ 201 (451)
++ |+++++++++++|||+|+||++|++ +|++++|||+|+|||+|+.+++++|||||||++.++
T Consensus 66 ~~-~~~~~l~~~~~~iLria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~i~r~ 129 (130)
T cd00619 66 RN-WSLDRLAIVERAILRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDKIAKD 129 (130)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHHHhhc
Confidence 86 8889999999999999999999988 999999999999999999999999999999999864
No 15
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=99.94 E-value=2e-26 Score=201.52 Aligned_cols=126 Identities=25% Similarity=0.386 Sum_probs=114.4
Q ss_pred CHHHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 012998 58 SPHRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLC 137 (451)
Q Consensus 58 ~~~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~ 137 (451)
+.+|+.|+++||+++..+.+.+.+++.. +....+++.|+.|+++++||+++|+..||++|++++
T Consensus 2 ~~~R~~a~~~l~~~~~~~~~~~~~l~~~----------------~~~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~~~ 65 (129)
T TIGR01951 2 RKARELALQALYQWELSGNDVEEIIEEF----------------LEERELDEEDREYFLELVRGVLENQEEIDELISPHL 65 (129)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHH----------------HHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3689999999999999888888877642 122357889999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHHHhc-CCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Q 012998 138 HDEKTFSSMEPLLLQILRIGFYEIVKL-DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVL 200 (451)
Q Consensus 138 ~~~~~~~~l~~~~~~iLrl~~yell~~-~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r 200 (451)
++ |+++++++++++|||+|+|||+|+ ++|++++|||+|++||+++++++++|||||||++.+
T Consensus 66 ~~-~~~~~l~~~~~~iLr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~i~r 128 (129)
T TIGR01951 66 KD-WSLERLDPVDRAILRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDKIAK 128 (129)
T ss_pred cC-CCHHHhhHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHHHhh
Confidence 64 999999999999999999999999 699999999999999999999999999999999976
No 16
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=99.93 E-value=9e-26 Score=196.68 Aligned_cols=123 Identities=33% Similarity=0.495 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 012998 60 HRAVSAVRLMRIQFGGAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHD 139 (451)
Q Consensus 60 ~R~~A~~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~~ 139 (451)
+|+.|+++||+++.++.+.+.++... ..... ++.|++|+++|+||+++|+..||++|++++++
T Consensus 3 ~R~~A~~~L~~v~~~~~~~~~~l~~~----------------~~~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~~l~~ 65 (126)
T cd00620 3 ARSTAAEVLRDVLQRGASLNAVLSAL----------------QKKDK-SDRDRGLATELVYGTLRWLALLDWIINPLLKK 65 (126)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHH----------------HHhcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 69999999999999888887776541 11122 68899999999999999999999999999974
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 012998 140 EKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (451)
Q Consensus 140 ~~~~~~l~~~~~~iLrl~~yell~~~~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~ 201 (451)
+..++++++++|||+|+|||+|+++|++++|||+|++||+++++++++|||||||++.|+
T Consensus 66 --~~~~~~~~~~~iLr~a~~el~~~~~p~~avvneaVelak~~~~~~~~~fVNaVLr~i~r~ 125 (126)
T cd00620 66 --PDVGKDPDVRNLLRLGLYQLLYLDVPPHAAVDETVEIAKIRKDLGRAGLVNAVLRRFERE 125 (126)
T ss_pred --CccccCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhCCCchhhHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999999999999999999999999873
No 17
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.8e-25 Score=220.72 Aligned_cols=214 Identities=21% Similarity=0.246 Sum_probs=160.3
Q ss_pred HHHHhhC-HHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHh-----------cCC--CC-ceeccCCCceEEEeCC
Q 012998 236 RWTKYLG-QEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLN-----------LLK--VP-HELSLHLDEFIRVKTG 300 (451)
Q Consensus 236 ~~~~~~g-~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~-----------~~g--~~-~~~~~~~~~~~~~~~~ 300 (451)
+..+.|. .+++..+++++..+.|..+|+.... -..+++...++ .+| ++ ....+|+|+.+.+...
T Consensus 31 ~~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~E~~~~e~~~~~p~~p~~~a~~~~ 109 (375)
T KOG2198|consen 31 KALDHFDKEDEFGDFWETIRKPLPSTFRYTALV-NNADALLSIFEEYEFESLKDRVIEGLKFEAPFELPWYPDNLAFEKD 109 (375)
T ss_pred HHHhcCcchHHHHHHHHHHHhccchhhhHHHhc-cchHHHHHHHhhccchhhhhhhccccccCccccCCCCcccchhhhc
Confidence 3445555 6788889999999999999987764 22333322221 123 32 2234566655443221
Q ss_pred C--cc------hhch-----hhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCC---CceEEEE
Q 012998 301 L--QN------VIQA-----GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAI 364 (451)
Q Consensus 301 ~--~~------~~~~-----~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~---~g~V~Av 364 (451)
. .. +... ....-|.++.||.+|++++.+|+++||++|||||||||+||+++.+.+.. .|.|+|+
T Consensus 110 ~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaN 189 (375)
T KOG2198|consen 110 VKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVAN 189 (375)
T ss_pred CcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEec
Confidence 1 01 1111 23456899999999999999999999999999999999999999988874 3699999
Q ss_pred eCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CCCCcCEEEEcCCCCCccccccCCccccc-CCHhHH
Q 012998 365 DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCDKVLLDAPCSGLGVLSKRADLRWN-RRLEDM 435 (451)
Q Consensus 365 Di~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~~~fD~VlvD~PCSg~G~lrr~pd~~~~-~~~~~l 435 (451)
|.+..|+..+.+.+++....+ +.+...|+..++.. ....||+||||+||||.|++|++|+++-. |+.+.-
T Consensus 190 D~d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~ 268 (375)
T KOG2198|consen 190 DVDPKRLNMLVHQLKRLPSPN-LLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRA 268 (375)
T ss_pred ccCHHHHHHHHHHHhccCCcc-eeeecccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhc
Confidence 999999999999998888776 66777787766543 23479999999999999999999999754 776666
Q ss_pred HHHHHHHHHHHHHhhC
Q 012998 436 EELKILQDELLDAASL 451 (451)
Q Consensus 436 ~~l~~lQ~~lL~~A~~ 451 (451)
..|+.+|.+||.++++
T Consensus 269 ~~L~~LQ~~iL~rgl~ 284 (375)
T KOG2198|consen 269 LGLHALQLRILRRGLR 284 (375)
T ss_pred cCChHHHHHHHHHHHH
Confidence 7899999999999863
No 18
>COG0781 NusB Transcription termination factor [Transcription]
Probab=99.92 E-value=1.5e-24 Score=192.92 Aligned_cols=133 Identities=22% Similarity=0.342 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCch-HHHhhcCCCCCCCcchhhhhhhccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012998 57 VSPHRAVSAVRLMRIQFGGAFA-DLLNKKGKGSGDNEMGYVERTLGFR-TKDLDDRDLRLVTDIVGGTIRWRRYLDHLIC 134 (451)
Q Consensus 57 ~~~~R~~A~~~L~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~l~~~-~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~ 134 (451)
++.+|+.|+|+||+++.++... +.+.+. +...+ .+ ..+....+..|+..++.||.+|+..||.+|.
T Consensus 10 R~~aR~~avq~Ly~~~~~~~~~~~~~~~~-----------~~~~~-~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~ 77 (151)
T COG0781 10 RRQARELAVQALYQWELSGSVSAEDILED-----------IEEEF-VENELDIELADSEYFRSLVKGVLENQEELDELIS 77 (151)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHH-----------HHHHH-hhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999976632 222221 00110 01 1122238889999999999999999999999
Q ss_pred HhccCCCCCCcccHHHHHHHHHHHHHHHhcC-CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Q 012998 135 LLCHDEKTFSSMEPLLLQILRIGFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLK 202 (451)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~iLrl~~yell~~~-~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~~ 202 (451)
+++++ |+++||++++++|||+|+|||+|.+ +|..++|||||+|||.|+++++++||||||+++++..
T Consensus 78 ~~L~~-w~~~rL~~verAILRla~yEl~~~~dvP~~VvInEaielaK~f~~e~s~kFINgVLd~i~~~~ 145 (151)
T COG0781 78 PHLKK-WSLERLDLVERAILRLALYELLFRDDVPYKVVINEAIELAKKFSGEDSHKFVNGVLDKIAKKL 145 (151)
T ss_pred HHHcc-CCHHHhhHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 99998 9999999999999999999999987 9999999999999999999999999999999999864
No 19
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.5e-24 Score=211.43 Aligned_cols=207 Identities=25% Similarity=0.365 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHHHHHHhcCCCC---------ceeccCCCceEEEeCCCcchhchhhhhc
Q 012998 242 GQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVP---------HELSLHLDEFIRVKTGLQNVIQAGLLKE 312 (451)
Q Consensus 242 g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~~~~L~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
+.+.+.++....+.++|.|+|+||++ .+-+|....|..++.. +.-+++++..+.++.. ..+...++|+.
T Consensus 115 ~~~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~-n~i~~~~ly~~ 192 (413)
T KOG2360|consen 115 KVKSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPS-NFIVEHELYKN 192 (413)
T ss_pred hHHHHHHhhccCCCCCceeEEeeccc-CchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCC-cceeecccccc
Confidence 44555555554446889999999999 6777777777665543 2234455555555532 35667899999
Q ss_pred CceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Q 012998 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~ 392 (451)
|.+.+||.+|+++++.|++.+|.+|+|+||+||.||+|+|..|.+.|+|+|+|.+..|.+.++..+...|+.+ +..+.+
T Consensus 193 g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~ 271 (413)
T KOG2360|consen 193 GKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEG 271 (413)
T ss_pred CceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 777799
Q ss_pred cccccc-ccCCCCcCEEEEcCCCCCccccccCCccc--ccCCHhHHHHHHHHHHHHHHHhhC
Q 012998 393 DLRTFA-DNSTVKCDKVLLDAPCSGLGVLSKRADLR--WNRRLEDMEELKILQDELLDAASL 451 (451)
Q Consensus 393 Da~~~~-~~~~~~fD~VlvD~PCSg~G~lrr~pd~~--~~~~~~~l~~l~~lQ~~lL~~A~~ 451 (451)
|+...+ +..-.....||+||+|||+|+..|.-.+. -..+++.++.|...|..++.+|+.
T Consensus 272 df~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~ 333 (413)
T KOG2360|consen 272 DFLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALT 333 (413)
T ss_pred cccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 988742 11124567899999999999987765555 345788999999999999999974
No 20
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=99.89 E-value=7.6e-23 Score=178.78 Aligned_cols=124 Identities=24% Similarity=0.344 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhC-CCchHHHhhcCCCCCCCcchhhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012998 60 HRAVSAVRLMRIQFG-GAFADLLNKKGKGSGDNEMGYVERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCH 138 (451)
Q Consensus 60 ~R~~A~~~L~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~ 138 (451)
+|+.|+++||+++.. +.+.+.++... .. ..+++.|++|++++|+|+++|+..||++|+++++
T Consensus 2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~~~~ 64 (129)
T cd00447 2 AREIAFQALYQVEIRNGISLEAVLSAL----------------EK-LQLAKKDRPFALELVYGVLRNLPELDDIISPLLK 64 (129)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHH----------------HH-cccchhHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 699999999999887 77777776541 11 2467799999999999999999999999999998
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHhcC--CCchhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Q 012998 139 DEKTFSSMEPLLLQILRIGFYEIVKLD--MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLL 201 (451)
Q Consensus 139 ~~~~~~~l~~~~~~iLrl~~yell~~~--~p~~a~inEaV~Lak~~~~~~~~~fVNaVLr~i~r~ 201 (451)
+ |.+++++...+.||+++.+|+.++. +|++++|||+|++||++++++.++|||||||++.++
T Consensus 65 ~-~~~~r~~~~~~~il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~~~r~ 128 (129)
T cd00447 65 K-WLLDRLDKVDRAILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRRIAKE 128 (129)
T ss_pred C-CChhhhhHHHHHHHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHHHhhc
Confidence 7 8889999999999999888888764 899999999999999999999999999999999874
No 21
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=99.85 E-value=3.5e-21 Score=179.21 Aligned_cols=93 Identities=25% Similarity=0.347 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHhcCCCCc
Q 012998 109 DRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAG 188 (451)
Q Consensus 109 ~~d~~~~~~lv~gvlr~~~~LD~~i~~~~~~~~~~~~l~~~~~~iLrl~~yell~~~~p~~a~inEaV~Lak~~~~~~~~ 188 (451)
+.+++|++++||||++|+..||++|+.++++ |++.++++.+++|||+|+|||+|+++|++++|||+|++||+|+.++++
T Consensus 110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~~l~~-W~l~rL~~idr~ILRlavyELl~l~~P~~vaINEAVeLAK~~~~~~~~ 188 (207)
T PRK09634 110 EEVREYALERIGAVIRNRKEIDQLLDTVMVG-WQLKRLPRIDRDILRLAVVEILFLNTPAAVAINEAVELAKRYSDEQGR 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc-ccccCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhCCCccc
Confidence 8899999999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhc
Q 012998 189 NLVNGILRKLVLLK 202 (451)
Q Consensus 189 ~fVNaVLr~i~r~~ 202 (451)
+|||||||++.+..
T Consensus 189 ~FVNaVLrri~r~~ 202 (207)
T PRK09634 189 RFINGVLRRLQDAL 202 (207)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999999864
No 22
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.32 E-value=2.4e-11 Score=119.20 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=112.5
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHcCCCCCcEEEEcCCCCCCHHHH---HHHHh--cCCCCce----eccCCCceEEEeCCC
Q 012998 231 VWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL---VMQLN--LLKVPHE----LSLHLDEFIRVKTGL 301 (451)
Q Consensus 231 ~wl~~~~~~~~g~e~~~~~~~~~~~~~~~~lRvN~~k~~~~~~~---~~~L~--~~g~~~~----~~~~~~~~~~~~~~~ 301 (451)
.|..++|.+ +..+++.++......++.+++.|..+..+.+++ .+.+. ..|.+.. ..++....+.+.
T Consensus 9 ~~~~~~l~~--~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~--- 83 (275)
T PRK09328 9 REATARLAS--PRLDAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVS--- 83 (275)
T ss_pred HHHHHHHhC--cHHHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEEC---
Confidence 566666665 677788888877666778888887664455433 11111 2233321 011111111111
Q ss_pred cchhchhhhhcCceeeecchhhhhhh---hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012998 302 QNVIQAGLLKEGLCAVQDESAGLVVA---VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (451)
Q Consensus 302 ~~~~~~~~~~~G~~~vQd~as~l~~~---~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~ 378 (451)
.+.+....+.-.++-. .+...++.+|||+|||+|..+..++...+ ...|+++|+++.+++.+++|+
T Consensus 84 ----------~~~lipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~ 152 (275)
T PRK09328 84 ----------PGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNA 152 (275)
T ss_pred ----------CCceeCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHH
Confidence 1112111111112221 23455778999999999999999998864 589999999999999999999
Q ss_pred HHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCccccc-cCCccc
Q 012998 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLS-KRADLR 427 (451)
Q Consensus 379 ~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lr-r~pd~~ 427 (451)
+ .+..+++.++++|+.... ..++||+|++||||...+.+. ..++++
T Consensus 153 ~-~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npPy~~~~~~~~~~~~v~ 199 (275)
T PRK09328 153 K-HGLGARVEFLQGDWFEPL--PGGRFDLIVSNPPYIPEADIHLLQPEVR 199 (275)
T ss_pred H-hCCCCcEEEEEccccCcC--CCCceeEEEECCCcCCcchhhhCCchhh
Confidence 8 333345899999985532 236899999999999887654 334554
No 23
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=1.7e-11 Score=116.46 Aligned_cols=93 Identities=13% Similarity=0.204 Sum_probs=80.1
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...+...+++++|++|||+|||+|..|..++...+..++|+++|+++.+++.++++++++|+++ ++++++|+..... .
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~-~ 143 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWE-P 143 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCc-c
Confidence 3455667889999999999999999999999987767899999999999999999999999976 8999999976532 2
Q ss_pred CCCcCEEEEcCCCCC
Q 012998 402 TVKCDKVLLDAPCSG 416 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg 416 (451)
..+||+|++|+++..
T Consensus 144 ~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 144 LAPYDRIYVTAAGPK 158 (215)
T ss_pred cCCCCEEEEcCCccc
Confidence 358999999988754
No 24
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=1e-11 Score=118.95 Aligned_cols=84 Identities=20% Similarity=0.391 Sum_probs=76.9
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
.++..+.+.+|++|||+|||||..|+.+++..+ .|+|+++|+|+.||+.+++.+...|..+ |.++++||.++| ..++
T Consensus 42 ~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP-f~D~ 118 (238)
T COG2226 42 ALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP-FPDN 118 (238)
T ss_pred HHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC-CCCC
Confidence 445566666999999999999999999999988 7999999999999999999999999988 999999999998 5689
Q ss_pred CcCEEEE
Q 012998 404 KCDKVLL 410 (451)
Q Consensus 404 ~fD~Vlv 410 (451)
+||+|.+
T Consensus 119 sFD~vt~ 125 (238)
T COG2226 119 SFDAVTI 125 (238)
T ss_pred ccCEEEe
Confidence 9999987
No 25
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.29 E-value=1.7e-11 Score=112.09 Aligned_cols=87 Identities=21% Similarity=0.340 Sum_probs=77.2
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
-.+....|.++||++++|+|||+|+.|+.++ ++++.++|||+|.++++++..++|++++|++| ++++.+|+-+.....
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPDL 100 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcCC
Confidence 3456677899999999999999999999999 77889999999999999999999999999987 999999998765433
Q ss_pred CCCcCEEEEc
Q 012998 402 TVKCDKVLLD 411 (451)
Q Consensus 402 ~~~fD~VlvD 411 (451)
+ +||+||+-
T Consensus 101 ~-~~daiFIG 109 (187)
T COG2242 101 P-SPDAIFIG 109 (187)
T ss_pred C-CCCEEEEC
Confidence 3 79999984
No 26
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.28 E-value=1.1e-11 Score=124.40 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=74.4
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCE
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
+++..++.+|||+|||+|..++.+|.. ...|+|+|+++.+++.+++|++.+|+++ ++++++|+..+.....+.||.
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCeE
Confidence 444446789999999999999999984 4789999999999999999999999965 999999998765333357999
Q ss_pred EEEcCCCCCcc
Q 012998 408 VLLDAPCSGLG 418 (451)
Q Consensus 408 VlvD~PCSg~G 418 (451)
|++|||++|.+
T Consensus 244 Vv~dPPr~G~~ 254 (315)
T PRK03522 244 VLVNPPRRGIG 254 (315)
T ss_pred EEECCCCCCcc
Confidence 99999999864
No 27
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.26 E-value=3.9e-11 Score=116.74 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcCEEEEcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 412 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD~VlvD~ 412 (451)
+.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.+++|++.+|. +++++|+.+... ...++||+|++||
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 45899999999999999998754 36899999999999999999998773 567889865432 1235799999999
Q ss_pred CCCCcccccc-CCcccccCCHhHH---HHHHHHHHHHHHHhh
Q 012998 413 PCSGLGVLSK-RADLRWNRRLEDM---EELKILQDELLDAAS 450 (451)
Q Consensus 413 PCSg~G~lrr-~pd~~~~~~~~~l---~~l~~lQ~~lL~~A~ 450 (451)
||..++.+.+ .|+.++......+ ..-...++.++.+|.
T Consensus 162 Py~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 162 PYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred CCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 9999887655 5666654332222 134556777776654
No 28
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.26 E-value=3e-11 Score=102.81 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=70.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcCEEEEcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLDA 412 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD~VlvD~ 412 (451)
|.+|||+|||+|..++.++... ..+++++|+++..++.++.++...++..+++++++|+..+.. ...++||+|++||
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 6799999999999999999874 589999999999999999999999997779999999988763 3367899999999
Q ss_pred CCCCc
Q 012998 413 PCSGL 417 (451)
Q Consensus 413 PCSg~ 417 (451)
|+...
T Consensus 79 P~~~~ 83 (117)
T PF13659_consen 79 PYGPR 83 (117)
T ss_dssp STTSB
T ss_pred CCccc
Confidence 99764
No 29
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.25 E-value=1.6e-11 Score=112.35 Aligned_cols=92 Identities=21% Similarity=0.298 Sum_probs=77.9
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
|.++.+++..+...++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++++ ++++..|.....
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~ 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc
Confidence 66788888888777889999999999999999998744 4689999999999999999999999998 999999987644
Q ss_pred ccCCCCcCEEEEcCCC
Q 012998 399 DNSTVKCDKVLLDAPC 414 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PC 414 (451)
. .++||.|+++||.
T Consensus 95 ~--~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 95 P--DGKFDLIVSNPPF 108 (170)
T ss_dssp C--TTCEEEEEE---S
T ss_pred c--ccceeEEEEccch
Confidence 3 4789999999994
No 30
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=5.5e-11 Score=112.18 Aligned_cols=91 Identities=18% Similarity=0.324 Sum_probs=78.5
Q ss_pred hhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCC
Q 012998 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (451)
Q Consensus 323 ~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~ 402 (451)
..+...+++.+|++|||+|||+|..|..+++.++..++|+++|+++.+++.+++|+++.|+.++++++++|+..... ..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~ 140 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KH 140 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cC
Confidence 34556778889999999999999999999999876789999999999999999999999987778999999976543 24
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
.+||+|+++..+
T Consensus 141 ~~fD~Ii~~~~~ 152 (205)
T PRK13944 141 APFDAIIVTAAA 152 (205)
T ss_pred CCccEEEEccCc
Confidence 689999998664
No 31
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.24 E-value=5.5e-11 Score=107.42 Aligned_cols=103 Identities=26% Similarity=0.297 Sum_probs=70.4
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCC-C-CcCEEEEcC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST-V-KCDKVLLDA 412 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~-~-~fD~VlvD~ 412 (451)
..|+|+|||.||-|+++|.. ..+|+|+|+++.+++.++.|++-+|+.++|.++++|+.++..... . .||.|++||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~---~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART---FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT---T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999997 358999999999999999999999998889999999988764331 2 289999999
Q ss_pred CCCCcccccc-CCcccccCCHhHHHHHHH
Q 012998 413 PCSGLGVLSK-RADLRWNRRLEDMEELKI 440 (451)
Q Consensus 413 PCSg~G~lrr-~pd~~~~~~~~~l~~l~~ 440 (451)
|..|..=.+. .=|+.....+-++.+|.+
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~ 106 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLK 106 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHH
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHH
Confidence 9998765442 223322344445555443
No 32
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.23 E-value=2.2e-11 Score=117.05 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=62.8
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
.++..+.+.+|++|||+|||||..|..++..+++.+.|+++|+|+.|++.++++++..+..+ |+++++|+.+++ ..++
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~lp-~~d~ 115 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDLP-FPDN 115 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB---S-TT
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHhc-CCCC
Confidence 45566788899999999999999999999988888999999999999999999999999885 999999999987 3568
Q ss_pred CcCEEEE
Q 012998 404 KCDKVLL 410 (451)
Q Consensus 404 ~fD~Vlv 410 (451)
+||.|++
T Consensus 116 sfD~v~~ 122 (233)
T PF01209_consen 116 SFDAVTC 122 (233)
T ss_dssp -EEEEEE
T ss_pred ceeEEEH
Confidence 9999985
No 33
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=7.1e-11 Score=112.78 Aligned_cols=112 Identities=22% Similarity=0.366 Sum_probs=85.4
Q ss_pred Cceeeecchhhhhhhhh---CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012998 313 GLCAVQDESAGLVVAVV---DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l---~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~ 389 (451)
|.|..|..+ .+++..+ .+.++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|++..|+. +++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~~--~~~ 88 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGVD--VDV 88 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCCe--eEE
Confidence 444455433 4444443 4678899999999999999998875 3469999999999999999999998873 788
Q ss_pred EcCccccccccCCCCcCEEEEcCC---CCCccccccCCcccccCC
Q 012998 390 IHADLRTFADNSTVKCDKVLLDAP---CSGLGVLSKRADLRWNRR 431 (451)
Q Consensus 390 ~~~Da~~~~~~~~~~fD~VlvD~P---CSg~G~lrr~pd~~~~~~ 431 (451)
+++|+.... ..+.||.|++||| |+..+...+.|+..|...
T Consensus 89 ~~~d~~~~~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~ 131 (223)
T PRK14967 89 RRGDWARAV--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAG 131 (223)
T ss_pred EECchhhhc--cCCCeeEEEECCCCCCCCcccccccChhHhhhCC
Confidence 889987642 2468999999987 666666667777777643
No 34
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.23 E-value=5.9e-11 Score=122.46 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=85.3
Q ss_pred hhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 012998 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (451)
Q Consensus 308 ~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~-~~ 386 (451)
..+++|+|..|......+..+. +|.+|||+|||+|+++++++. ++..+|+++|+|+.+++.+++|++.+|+. ++
T Consensus 198 ~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~ 272 (396)
T PRK15128 198 GGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSK 272 (396)
T ss_pred cccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCc
Confidence 5688999999977766665543 588999999999999887654 44569999999999999999999999986 35
Q ss_pred EEEEcCcccccccc---CCCCcCEEEEcCCCCC
Q 012998 387 IRTIHADLRTFADN---STVKCDKVLLDAPCSG 416 (451)
Q Consensus 387 I~~~~~Da~~~~~~---~~~~fD~VlvD~PCSg 416 (451)
++++++|+.++... ..++||.|++|||+-.
T Consensus 273 v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 273 AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFV 305 (396)
T ss_pred EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 89999999876432 1358999999999854
No 35
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.22 E-value=5.5e-11 Score=114.05 Aligned_cols=99 Identities=19% Similarity=0.258 Sum_probs=89.3
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~ 400 (451)
.+.|++.+..+....+|||+|||.|..++.+|+...+ .+|++||+++.+.+.+++|++.+++..+|+++++|+.++.+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 5788888988888999999999999999999998665 899999999999999999999999999999999999988764
Q ss_pred C-CCCcCEEEEcCCCCCcccc
Q 012998 401 S-TVKCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 401 ~-~~~fD~VlvD~PCSg~G~l 420 (451)
. ..+||.|+|+||.--.|.-
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~ 131 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSR 131 (248)
T ss_pred ccccccCEEEeCCCCCCCccc
Confidence 4 3469999999999888875
No 36
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.22 E-value=7.8e-11 Score=111.76 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=80.1
Q ss_pred eeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc
Q 012998 316 AVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (451)
Q Consensus 316 ~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~ 395 (451)
..+......+...+++++|++|||+|||+|+.|..++..++..++|+++|+++.+++.++++++..|+.+ |+++++|+.
T Consensus 59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~ 137 (212)
T PRK13942 59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGT 137 (212)
T ss_pred eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcc
Confidence 3344444556677889999999999999999999999998777899999999999999999999999976 899999987
Q ss_pred cccccCCCCcCEEEEcC
Q 012998 396 TFADNSTVKCDKVLLDA 412 (451)
Q Consensus 396 ~~~~~~~~~fD~VlvD~ 412 (451)
.... ..++||+|+++.
T Consensus 138 ~~~~-~~~~fD~I~~~~ 153 (212)
T PRK13942 138 LGYE-ENAPYDRIYVTA 153 (212)
T ss_pred cCCC-cCCCcCEEEECC
Confidence 6432 246899999874
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.21 E-value=7.9e-11 Score=99.30 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=66.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
||.+|||+|||+|..+..+++.. +..+|+|+|+++.+++.+++++...+...+|+++++|+ .......+.||+|+++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 68899999999999999999953 45899999999999999999998888877899999999 33323346799999876
No 38
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.20 E-value=1.1e-10 Score=117.89 Aligned_cols=89 Identities=15% Similarity=0.130 Sum_probs=75.7
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
.++.++++++|+.|||.|||+|+.++.++.. ...|+|+|+++.++..++.|++.+|+.+ +.++++|+.+++. ..+
T Consensus 173 ~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~-~~~ 247 (329)
T TIGR01177 173 AMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL-SSE 247 (329)
T ss_pred HHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc-ccC
Confidence 3344567889999999999999998876653 4789999999999999999999999987 8899999998753 257
Q ss_pred CcCEEEEcCCCCCc
Q 012998 404 KCDKVLLDAPCSGL 417 (451)
Q Consensus 404 ~fD~VlvD~PCSg~ 417 (451)
+||.|++||||...
T Consensus 248 ~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 248 SVDAIATDPPYGRS 261 (329)
T ss_pred CCCEEEECCCCcCc
Confidence 89999999999653
No 39
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.20 E-value=6.9e-11 Score=111.66 Aligned_cols=93 Identities=11% Similarity=0.190 Sum_probs=76.6
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
-..+.+.|+++||++|||+|||+|+.|..++.+++..|.|+++|+++..++.++++++.+|+.| |.++++|+....+ .
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g~~-~ 138 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEGWP-E 138 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGTTG-G
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhccc-c
Confidence 3445577889999999999999999999999999988999999999999999999999999986 8999999876433 2
Q ss_pred CCCcCEEEEcCCCCC
Q 012998 402 TVKCDKVLLDAPCSG 416 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg 416 (451)
..+||+|++.+-|..
T Consensus 139 ~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPE 153 (209)
T ss_dssp G-SEEEEEESSBBSS
T ss_pred CCCcCEEEEeeccch
Confidence 368999999877643
No 40
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.20 E-value=6.4e-11 Score=124.39 Aligned_cols=89 Identities=27% Similarity=0.349 Sum_probs=75.9
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---cCC
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NST 402 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---~~~ 402 (451)
...+++.+|++|||+|||+|..++.++.. .+.|+|+|+|+.+++.+++|++.+|+.+ ++++++|+.+... ...
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~ 365 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWAL 365 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhc
Confidence 34556778999999999999999999986 3689999999999999999999999986 8999999976432 123
Q ss_pred CCcCEEEEcCCCCCcc
Q 012998 403 VKCDKVLLDAPCSGLG 418 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~G 418 (451)
.+||+|++|||++|.+
T Consensus 366 ~~fD~Vi~dPPr~g~~ 381 (443)
T PRK13168 366 GGFDKVLLDPPRAGAA 381 (443)
T ss_pred CCCCEEEECcCCcChH
Confidence 5799999999999865
No 41
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-10 Score=106.63 Aligned_cols=88 Identities=26% Similarity=0.351 Sum_probs=75.4
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
..-.|..|+|+|||+|..++..+.+ +..+|+|+|++++.++.+++|+.+++. .|.++.+|+.++. .+||.|+
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~g--~v~f~~~dv~~~~----~~~dtvi 113 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELLG--DVEFVVADVSDFR----GKFDTVI 113 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhCC--ceEEEEcchhhcC----CccceEE
Confidence 3456889999999999998876654 457999999999999999999999443 4999999998875 6799999
Q ss_pred EcCCCCCccccccCCcccc
Q 012998 410 LDAPCSGLGVLSKRADLRW 428 (451)
Q Consensus 410 vD~PCSg~G~lrr~pd~~~ 428 (451)
.||| .|+.+||+|...
T Consensus 114 mNPP---FG~~~rhaDr~F 129 (198)
T COG2263 114 MNPP---FGSQRRHADRPF 129 (198)
T ss_pred ECCC---CccccccCCHHH
Confidence 9999 788899998765
No 42
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.19 E-value=9.2e-11 Score=113.22 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=78.1
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc--
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-- 398 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-- 398 (451)
...+++..+++.||++||+.|+|+|..|..++..+++.|+|+..|+++++++.+++|++.+|+.++|++.+.|...-.
T Consensus 28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 344677889999999999999999999999999999999999999999999999999999999877999999986422
Q ss_pred ccCCCCcCEEEEcCCCCCc
Q 012998 399 DNSTVKCDKVLLDAPCSGL 417 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PCSg~ 417 (451)
......||.|++|.|.--.
T Consensus 108 ~~~~~~~DavfLDlp~Pw~ 126 (247)
T PF08704_consen 108 EELESDFDAVFLDLPDPWE 126 (247)
T ss_dssp TT-TTSEEEEEEESSSGGG
T ss_pred ccccCcccEEEEeCCCHHH
Confidence 1224679999999996543
No 43
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.19 E-value=1e-10 Score=115.77 Aligned_cols=88 Identities=22% Similarity=0.339 Sum_probs=75.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..++.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++|+.++|.++++|+.... ..++||.|++
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~--~~~~fD~Iv~ 195 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL--PGRKYDLIVS 195 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc--CCCCccEEEE
Confidence 34567999999999999999998754 47999999999999999999999999777999999986532 2357999999
Q ss_pred cCCCCCccccc
Q 012998 411 DAPCSGLGVLS 421 (451)
Q Consensus 411 D~PCSg~G~lr 421 (451)
|||+...+.+.
T Consensus 196 NPPy~~~~~~~ 206 (284)
T TIGR03533 196 NPPYVDAEDMA 206 (284)
T ss_pred CCCCCCccchh
Confidence 99998877654
No 44
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2e-10 Score=109.52 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=91.9
Q ss_pred hhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012998 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (451)
Q Consensus 310 ~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~ 389 (451)
|+.+-=.+--+.+.+++..+++.||++|||.|+|+|..|..||..+++.|+|+.+|+.++.++.+++|++..|+.|+|++
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~ 150 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL 150 (256)
T ss_pred CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence 66666566667778889999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EcCccccccccCCCCcCEEEEcCC
Q 012998 390 IHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 390 ~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
..+|..+... ...||+|++|.|
T Consensus 151 ~~~Dv~~~~~--~~~vDav~LDmp 172 (256)
T COG2519 151 KLGDVREGID--EEDVDAVFLDLP 172 (256)
T ss_pred Eecccccccc--ccccCEEEEcCC
Confidence 9999988653 348999999988
No 45
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.17 E-value=1.1e-10 Score=129.02 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=88.6
Q ss_pred hhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 012998 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (451)
Q Consensus 308 ~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~-~~ 386 (451)
...+.|.|.-|.....++..+. +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|+. ++
T Consensus 516 ~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~ 590 (702)
T PRK11783 516 DYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQ 590 (702)
T ss_pred CCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 4567899999988777766554 4789999999999999999874 4457999999999999999999999996 56
Q ss_pred EEEEcCccccccccCCCCcCEEEEcCCCCCcc
Q 012998 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 387 I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G 418 (451)
++++++|+.++.....++||+|++|||+-+.+
T Consensus 591 v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~ 622 (702)
T PRK11783 591 HRLIQADCLAWLKEAREQFDLIFIDPPTFSNS 622 (702)
T ss_pred eEEEEccHHHHHHHcCCCcCEEEECCCCCCCC
Confidence 99999999876533346899999999987643
No 46
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.16 E-value=2e-10 Score=102.87 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=71.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
+.+.+|||+|||+|..+..++..+.+.++|+++|+++.+++.+++++++.++++ ++++++|+.+++....+.||+|+++
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~n-i~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDN-IEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTT-EEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccc-cceEEeehhccccccCCCeeEEEEc
Confidence 467899999999999999999766667899999999999999999999999995 9999999999653212689999999
Q ss_pred CCC
Q 012998 412 APC 414 (451)
Q Consensus 412 ~PC 414 (451)
.++
T Consensus 81 ~~l 83 (152)
T PF13847_consen 81 GVL 83 (152)
T ss_dssp STG
T ss_pred Cch
Confidence 887
No 47
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=2.8e-10 Score=113.86 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=73.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
..+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++.+|+.++|+++++|+....+ .++||+|++|||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 36899999999999999998753 479999999999999999999999997779999999865332 357999999999
Q ss_pred CCCccccc
Q 012998 414 CSGLGVLS 421 (451)
Q Consensus 414 CSg~G~lr 421 (451)
+.+.+.+.
T Consensus 211 yi~~~~~~ 218 (307)
T PRK11805 211 YVDAEDMA 218 (307)
T ss_pred CCCccchh
Confidence 99877643
No 48
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=2.7e-10 Score=106.33 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=82.9
Q ss_pred cCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Q 012998 312 EGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (451)
Q Consensus 312 ~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~ 391 (451)
.|.+.-|----....++|++++|++|||+|||+|+.|..||++. ++|+++|+.+...+.+++|++.+|+.| |.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEE
Confidence 45555555455567788999999999999999999999999984 599999999999999999999999998 99999
Q ss_pred CccccccccCCCCcCEEEEcCCC
Q 012998 392 ADLRTFADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 392 ~Da~~~~~~~~~~fD~VlvD~PC 414 (451)
+|+..-.+ ...+||+|++.+-+
T Consensus 127 gDG~~G~~-~~aPyD~I~Vtaaa 148 (209)
T COG2518 127 GDGSKGWP-EEAPYDRIIVTAAA 148 (209)
T ss_pred CCcccCCC-CCCCcCEEEEeecc
Confidence 99976432 23689999997544
No 49
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.13 E-value=2.2e-10 Score=107.53 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=67.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.++.+|||+|||+|..++.++.. ...+|+++|+++..++.+++|++.+|+.+ ++++++|+..+.......||+|++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHHhhcCCCceEEEEC
Confidence 56889999999999999865554 24799999999999999999999999875 8999999977543223579999999
Q ss_pred CCC
Q 012998 412 APC 414 (451)
Q Consensus 412 ~PC 414 (451)
||.
T Consensus 129 PPy 131 (199)
T PRK10909 129 PPF 131 (199)
T ss_pred CCC
Confidence 994
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.13 E-value=2.7e-10 Score=106.77 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=76.0
Q ss_pred hhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCC
Q 012998 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (451)
Q Consensus 323 ~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~ 402 (451)
.++...+++.++++|||+|||+|..++.++..+++.++|+++|+++.+++.+++|++.+|+.+++.++.+|+.++.....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence 34445678899999999999999999999988877789999999999999999999999964458899999877543334
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+.||+|+++.
T Consensus 110 ~~~D~V~~~~ 119 (198)
T PRK00377 110 EKFDRIFIGG 119 (198)
T ss_pred CCCCEEEECC
Confidence 6899999964
No 51
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.5e-10 Score=120.33 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=80.9
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-- 401 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-- 401 (451)
.+..+++..++++|||+.||.|++|+.+|.. ..+|+|+|+++..++.+++|++.+|+.| +++..+|+..+....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~ 359 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWE 359 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccc
Confidence 4456677888999999999999999999954 5799999999999999999999999998 999999999886543
Q ss_pred CCCcCEEEEcCCCCCcc
Q 012998 402 TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg~G 418 (451)
...||.|++|||.+|.+
T Consensus 360 ~~~~d~VvvDPPR~G~~ 376 (432)
T COG2265 360 GYKPDVVVVDPPRAGAD 376 (432)
T ss_pred cCCCCEEEECCCCCCCC
Confidence 24789999999999998
No 52
>PLN02476 O-methyltransferase
Probab=99.12 E-value=2.2e-10 Score=112.31 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=84.0
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
+.....+++..++...+..+|||+|+++|+.|+++|..+++.|+|+++|.++++++.+++|+++.|+.++|+++.+|+.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34445566666777777889999999999999999999988899999999999999999999999999889999999977
Q ss_pred ccccC-----CCCcCEEEEcCCC
Q 012998 397 FADNS-----TVKCDKVLLDAPC 414 (451)
Q Consensus 397 ~~~~~-----~~~fD~VlvD~PC 414 (451)
..+.. .++||.||+|++=
T Consensus 182 ~L~~l~~~~~~~~FD~VFIDa~K 204 (278)
T PLN02476 182 SLKSMIQNGEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHhcccCCCCCEEEECCCH
Confidence 54321 3589999999984
No 53
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.11 E-value=2.1e-10 Score=110.38 Aligned_cols=92 Identities=23% Similarity=0.210 Sum_probs=79.2
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc-
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~- 400 (451)
.+++..++...++.+|||+|||+|+.++.++..+++.|+|+++|+++++++.+++|+++.|+.++|+++.+|+.+..+.
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 4455556666778899999999999999999998888999999999999999999999999988899999999875321
Q ss_pred ----CCCCcCEEEEcCC
Q 012998 401 ----STVKCDKVLLDAP 413 (451)
Q Consensus 401 ----~~~~fD~VlvD~P 413 (451)
..++||.||+|++
T Consensus 137 ~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HhCCCCCCCCEEEECCC
Confidence 1368999999974
No 54
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.11 E-value=2.7e-10 Score=116.51 Aligned_cols=129 Identities=22% Similarity=0.317 Sum_probs=100.9
Q ss_pred hhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 012998 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (451)
Q Consensus 308 ~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~-~~ 386 (451)
...++|.|.-|..+...+...+. |.+|||+||-||++|+++|. ++..+|++||+|...++.+++|++-+|++ .+
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~ 269 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR 269 (393)
T ss_pred CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence 36789999999999887776654 99999999999999998876 35569999999999999999999999985 45
Q ss_pred EEEEcCccccccccC---CCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHH
Q 012998 387 IRTIHADLRTFADNS---TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLD 447 (451)
Q Consensus 387 I~~~~~Da~~~~~~~---~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~ 447 (451)
+.++++|+..+.... ..+||+|++|||-=+ +++...|+ -.++...|...=.+||.
T Consensus 270 ~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~-----r~k~~~~~-~~rdy~~l~~~~~~iL~ 327 (393)
T COG1092 270 HRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA-----RSKKQEFS-AQRDYKDLNDLALRLLA 327 (393)
T ss_pred eeeehhhHHHHHHHHHhcCCcccEEEECCcccc-----cCcccchh-HHHHHHHHHHHHHHHcC
Confidence 789999998876543 348999999999544 55555554 23444455544445543
No 55
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.10 E-value=1.5e-10 Score=118.09 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=63.9
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc----
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 400 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---- 400 (451)
+..++++.++ .|||++||.|.+|+.+|.. ..+|+|+|+++.+++.+++|++.+|++| ++++.+++.++...
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHCCS
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHHhh
Confidence 4456676666 8999999999999999876 4689999999999999999999999997 89998877654210
Q ss_pred -----------CCCCcCEEEEcCCCCCcc
Q 012998 401 -----------STVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 401 -----------~~~~fD~VlvD~PCSg~G 418 (451)
....+|.|++|||.+|.+
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 013689999999999987
No 56
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.09 E-value=3.4e-10 Score=118.56 Aligned_cols=88 Identities=22% Similarity=0.278 Sum_probs=74.8
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CC
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---ST 402 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~ 402 (451)
...+.+.++++|||+|||+|..++.+|.. ..+|+|+|+++.+++.+++|++.+|+.| ++++.+|+..+... ..
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~~~~~ 360 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQPWAG 360 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHHHhcC
Confidence 34556778899999999999999999986 3589999999999999999999999976 99999999764321 13
Q ss_pred CCcCEEEEcCCCCCc
Q 012998 403 VKCDKVLLDAPCSGL 417 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~ 417 (451)
.+||+|++|||++|.
T Consensus 361 ~~~D~vi~dPPr~G~ 375 (431)
T TIGR00479 361 QIPDVLLLDPPRKGC 375 (431)
T ss_pred CCCCEEEECcCCCCC
Confidence 579999999999884
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.09 E-value=6.5e-10 Score=102.40 Aligned_cols=91 Identities=23% Similarity=0.246 Sum_probs=75.3
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
.+.+.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..++. ++++.+|+....
T Consensus 5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~d~~~~~ 79 (179)
T TIGR00537 5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNVG--LDVVMTDLFKGV 79 (179)
T ss_pred CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCc--eEEEEccccccc
Confidence 3445667677777778899999999999999998852 38999999999999999999988873 788899986643
Q ss_pred ccCCCCcCEEEEcCCCCCc
Q 012998 399 DNSTVKCDKVLLDAPCSGL 417 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PCSg~ 417 (451)
.++||.|++++|+-..
T Consensus 80 ---~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 80 ---RGKFDVILFNPPYLPL 95 (179)
T ss_pred ---CCcccEEEECCCCCCC
Confidence 3589999999998543
No 58
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.08 E-value=4e-10 Score=115.81 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=72.1
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEE
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~V 408 (451)
++..++.+|||+|||+|..++.++.. ...|+|+|+++.+++.+++|++.+|+++ ++++++|+..+.......||.|
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~v 304 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFATAQMSAPELV 304 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHHHhcCCCCCEE
Confidence 34346789999999999999999864 4689999999999999999999999975 9999999987643222469999
Q ss_pred EEcCCCCCcc
Q 012998 409 LLDAPCSGLG 418 (451)
Q Consensus 409 lvD~PCSg~G 418 (451)
++|||..|.+
T Consensus 305 i~DPPr~G~~ 314 (374)
T TIGR02085 305 LVNPPRRGIG 314 (374)
T ss_pred EECCCCCCCc
Confidence 9999987643
No 59
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.07 E-value=6e-10 Score=105.33 Aligned_cols=95 Identities=22% Similarity=0.238 Sum_probs=83.7
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc-Cccccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH-ADLRTF 397 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~-~Da~~~ 397 (451)
.+...++..++...+..+||++|++.|+.|++||..++..|+++++|+++++.+.+++|+++.|+.++|.++. +|+.+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 5566677777888888999999999999999999999977999999999999999999999999999888888 598776
Q ss_pred cc-cCCCCcCEEEEcCC
Q 012998 398 AD-NSTVKCDKVLLDAP 413 (451)
Q Consensus 398 ~~-~~~~~fD~VlvD~P 413 (451)
.. ...++||.||+|+-
T Consensus 125 l~~~~~~~fDliFIDad 141 (219)
T COG4122 125 LSRLLDGSFDLVFIDAD 141 (219)
T ss_pred HHhccCCCccEEEEeCC
Confidence 54 24689999999974
No 60
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.07 E-value=1.2e-09 Score=93.38 Aligned_cols=85 Identities=26% Similarity=0.398 Sum_probs=71.0
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
...+.+.++++|||+|||+|..+..++...++ ++|+++|+++.+++.++++++.+++.+ ++++.+|+.........+|
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccccChhhcCCC
Confidence 34556777889999999999999999998654 899999999999999999999999875 8888898775332234689
Q ss_pred CEEEEcC
Q 012998 406 DKVLLDA 412 (451)
Q Consensus 406 D~VlvD~ 412 (451)
|.|+++.
T Consensus 90 D~v~~~~ 96 (124)
T TIGR02469 90 DRVFIGG 96 (124)
T ss_pred CEEEECC
Confidence 9999864
No 61
>PRK04266 fibrillarin; Provisional
Probab=99.06 E-value=7.4e-10 Score=106.01 Aligned_cols=89 Identities=24% Similarity=0.319 Sum_probs=70.8
Q ss_pred hhhhhhhh--hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 321 SAGLVVAV--VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 321 as~l~~~~--l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
++.++..+ +++++|++|||+|||+|+++.+++..++ .|+|+|+|+++.|++.+.++++.. .| |.++.+|+....
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~~~~ 133 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADARKPE 133 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCCCcc
Confidence 34444434 7888999999999999999999999886 689999999999999888887754 44 788899987521
Q ss_pred --ccCCCCcCEEEEcCC
Q 012998 399 --DNSTVKCDKVLLDAP 413 (451)
Q Consensus 399 --~~~~~~fD~VlvD~P 413 (451)
....++||+|++|.+
T Consensus 134 ~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 134 RYAHVVEKVDVIYQDVA 150 (226)
T ss_pred hhhhccccCCEEEECCC
Confidence 112357999999875
No 62
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=9e-10 Score=102.99 Aligned_cols=98 Identities=15% Similarity=0.212 Sum_probs=80.7
Q ss_pred CceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Q 012998 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~ 392 (451)
|.-..|.+...++...+++.++++|||+|||+|..|..++... +.++|+++|+++.+++.+++|++++|+.+ ++++++
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEEC
Confidence 4445677788888888899999999999999999999998764 45899999999999999999999999975 899999
Q ss_pred ccccccccCCCCcCEEEEcC
Q 012998 393 DLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 393 Da~~~~~~~~~~fD~VlvD~ 412 (451)
|+..........+|.|++|.
T Consensus 98 d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred chHHHHhhCCCCCCEEEEEC
Confidence 98653222234578888874
No 63
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.05 E-value=3.1e-10 Score=105.14 Aligned_cols=82 Identities=24% Similarity=0.338 Sum_probs=63.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~Vl 409 (451)
+|.+|||+|||+|..++..+++ +...|+.||.++..+..+++|++.+++.+.++++..|+...... ...+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 6899999999999999988775 56799999999999999999999999998889999997654321 357899999
Q ss_pred EcCCCCC
Q 012998 410 LDAPCSG 416 (451)
Q Consensus 410 vD~PCSg 416 (451)
+|||.-.
T Consensus 120 lDPPY~~ 126 (183)
T PF03602_consen 120 LDPPYAK 126 (183)
T ss_dssp E--STTS
T ss_pred ECCCccc
Confidence 9999754
No 64
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.05 E-value=4.4e-10 Score=110.66 Aligned_cols=104 Identities=25% Similarity=0.317 Sum_probs=80.4
Q ss_pred hhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC-ce
Q 012998 308 GLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN-SV 386 (451)
Q Consensus 308 ~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~-~~ 386 (451)
...+.|+|.-|.+.-..+.... .|.+|||++|-+|+++++++. ++..+|++||.|...++.+++|++.+|++ +.
T Consensus 101 ~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~ 175 (286)
T PF10672_consen 101 DGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDR 175 (286)
T ss_dssp SSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTC
T ss_pred CCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence 4678999999999988887764 488999999999999998765 45568999999999999999999999986 56
Q ss_pred EEEEcCcccccccc--CCCCcCEEEEcCCCCC
Q 012998 387 IRTIHADLRTFADN--STVKCDKVLLDAPCSG 416 (451)
Q Consensus 387 I~~~~~Da~~~~~~--~~~~fD~VlvD~PCSg 416 (451)
++++.+|+..+... ..++||+|++|||.-+
T Consensus 176 ~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~ 207 (286)
T PF10672_consen 176 HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA 207 (286)
T ss_dssp EEEEES-HHHHHHHHHHTT-EEEEEE--SSEE
T ss_pred eEEEecCHHHHHHHHhcCCCCCEEEECCCCCC
Confidence 89999999875432 1468999999999664
No 65
>PTZ00146 fibrillarin; Provisional
Probab=99.05 E-value=7.7e-10 Score=108.74 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=65.8
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc--cCCCCcC
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD--NSTVKCD 406 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~--~~~~~fD 406 (451)
+.+++|++|||+|||||++|.+++..+++.|.|+|||+++.+++.+.+.++.. +| |.++.+|++.... ...+.||
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccChhhhhcccCCCC
Confidence 45789999999999999999999999988899999999998877666665432 44 7788899875311 1235799
Q ss_pred EEEEcCC
Q 012998 407 KVLLDAP 413 (451)
Q Consensus 407 ~VlvD~P 413 (451)
+||+|..
T Consensus 205 vV~~Dva 211 (293)
T PTZ00146 205 VIFADVA 211 (293)
T ss_pred EEEEeCC
Confidence 9999985
No 66
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.03 E-value=4.5e-10 Score=105.82 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=76.1
Q ss_pred hhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-
Q 012998 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS- 401 (451)
Q Consensus 323 ~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~- 401 (451)
+++..++......+||++|++.|+.|+++|+.+++.|+|+++|+++++.+.+++++++.|+.++|+++.+|+.+..+..
T Consensus 35 ~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 35 QLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 3444444444556999999999999999999998889999999999999999999999999989999999998753321
Q ss_pred ----CCCcCEEEEcCCC
Q 012998 402 ----TVKCDKVLLDAPC 414 (451)
Q Consensus 402 ----~~~fD~VlvD~PC 414 (451)
.+.||.||+|+.=
T Consensus 115 ~~~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 115 NDGEEGQFDFVFIDADK 131 (205)
T ss_dssp HTTTTTSEEEEEEESTG
T ss_pred hccCCCceeEEEEcccc
Confidence 3579999999963
No 67
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.02 E-value=1.7e-09 Score=103.47 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=75.0
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
.+...+.+++|.+|||+|||+|..+..+++..++.+.|+++|+++.+++.++++++..++++ ++++++|+..++ ...+
T Consensus 36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~~~ 113 (231)
T TIGR02752 36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELP-FDDN 113 (231)
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEEEechhcCC-CCCC
Confidence 44456788889999999999999999999988777899999999999999999999988865 899999998764 2357
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
+||.|+++-
T Consensus 114 ~fD~V~~~~ 122 (231)
T TIGR02752 114 SFDYVTIGF 122 (231)
T ss_pred CccEEEEec
Confidence 899999753
No 68
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.02 E-value=1.9e-09 Score=101.95 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=77.2
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
.+-.....+...++++++++|||+|||+|..|..++... ++|+++|+++.+++.+++++++.|+.+ +.++++|+..
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~ 137 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWK 137 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCccc
Confidence 333333455567888999999999999999999888773 589999999999999999999999987 8999999865
Q ss_pred ccccCCCCcCEEEEcCCCCC
Q 012998 397 FADNSTVKCDKVLLDAPCSG 416 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~PCSg 416 (451)
... ..++||+|+++.+|..
T Consensus 138 ~~~-~~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 138 GWP-AYAPFDRILVTAAAPE 156 (212)
T ss_pred CCC-cCCCcCEEEEccCchh
Confidence 322 2368999999987643
No 69
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.02 E-value=1.8e-09 Score=99.73 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=70.8
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCc--------eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQG--------LVYAIDINKGRLRILNETAKLHQVNSVIRTIHA 392 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g--------~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~ 392 (451)
-+..++.+.++++|+.|||-+||+|++.+..+....+.. .++|+|+++++++.+++|++..|+.+.|.+.+.
T Consensus 16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 345556677889999999999999999988877655433 389999999999999999999999988999999
Q ss_pred ccccccccCCCCcCEEEEcCCC
Q 012998 393 DLRTFADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 393 Da~~~~~~~~~~fD~VlvD~PC 414 (451)
|+..++ ...+.+|.|++|||.
T Consensus 96 D~~~l~-~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 96 DARELP-LPDGSVDAIVTNPPY 116 (179)
T ss_dssp -GGGGG-GTTSBSCEEEEE--S
T ss_pred chhhcc-cccCCCCEEEECcch
Confidence 999987 345789999999996
No 70
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.01 E-value=1.8e-09 Score=100.34 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=67.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
++.+|||+|||+|..++.++...+ .++|+++|+++.+++.++++++..++++ ++++++|+.++.. .++||.|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--~~~fDlV~~~~ 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--EEKFDVVTSRA 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--CCCccEEEEcc
Confidence 488999999999999999988644 5899999999999999999999999987 9999999988754 56899999863
No 71
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.01 E-value=1.2e-09 Score=111.87 Aligned_cols=81 Identities=17% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC------------
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------ 401 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~------------ 401 (451)
+.+|||+|||+|..|+.++.. ...|+|+|+++.+++.+++|++.+|++| ++++++|+..+....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~---~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARN---FRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHhhcccccccccc
Confidence 357999999999999988875 3589999999999999999999999985 999999998753211
Q ss_pred ---CCCcCEEEEcCCCCCcc
Q 012998 402 ---TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 402 ---~~~fD~VlvD~PCSg~G 418 (451)
..+||+|++|||.+|.+
T Consensus 283 ~~~~~~~D~v~lDPPR~G~~ 302 (362)
T PRK05031 283 DLKSYNFSTIFVDPPRAGLD 302 (362)
T ss_pred cccCCCCCEEEECCCCCCCc
Confidence 12589999999998754
No 72
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.3e-09 Score=100.10 Aligned_cols=85 Identities=24% Similarity=0.309 Sum_probs=72.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC--CcCEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV--KCDKVL 409 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~--~fD~Vl 409 (451)
-+|.+|||++||+|..++..+++ +...++.||.|...+..+++|++.+++.....++..|+..+...... .||+|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVf 119 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVF 119 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEE
Confidence 46899999999999999988886 56799999999999999999999999887889999999866443333 499999
Q ss_pred EcCCCCCccc
Q 012998 410 LDAPCSGLGV 419 (451)
Q Consensus 410 vD~PCSg~G~ 419 (451)
+|||.- -|+
T Consensus 120 lDPPy~-~~l 128 (187)
T COG0742 120 LDPPYA-KGL 128 (187)
T ss_pred eCCCCc-cch
Confidence 999985 444
No 73
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.00 E-value=1.1e-09 Score=108.34 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=78.9
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC-
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV- 403 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~- 403 (451)
+...|.++||+.+||++||.||.|..+++.+++.|+|+|+|.++.+++.++++++. .++++++++|+.++......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcC
Confidence 34566788999999999999999999999987779999999999999999998876 24699999999987543322
Q ss_pred --CcCEEEEcCCCCCccc
Q 012998 404 --KCDKVLLDAPCSGLGV 419 (451)
Q Consensus 404 --~fD~VlvD~PCSg~G~ 419 (451)
+||.|++|--||+.-.
T Consensus 88 ~~~vDgIl~DLGvSs~Ql 105 (296)
T PRK00050 88 LGKVDGILLDLGVSSPQL 105 (296)
T ss_pred CCccCEEEECCCcccccc
Confidence 7999999999998754
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.00 E-value=4e-09 Score=101.84 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=73.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
.+.+|||+|||+|..+..++...+ ...|+++|+++.+++.++++++..|+.+ +.++++|+.... ..++||+|++||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~--~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPL--PGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccC--cCCceeEEEECC
Confidence 356999999999999999998764 4699999999999999999999999975 899999987632 247899999999
Q ss_pred CCCCccccc
Q 012998 413 PCSGLGVLS 421 (451)
Q Consensus 413 PCSg~G~lr 421 (451)
|+...+.+.
T Consensus 163 Py~~~~~~~ 171 (251)
T TIGR03534 163 PYIPEADIH 171 (251)
T ss_pred CCCchhhhh
Confidence 999877543
No 75
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=2.5e-09 Score=107.37 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=74.0
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
+...++++++++|||+|||+|..+..++...+..+.|+++|+++.+++.++++++.+|+++ +.++++|+...... ...
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~-~~~ 149 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPE-FAP 149 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccc-cCC
Confidence 3445678899999999999999999999988766899999999999999999999999976 88999998765432 357
Q ss_pred cCEEEEcCC
Q 012998 405 CDKVLLDAP 413 (451)
Q Consensus 405 fD~VlvD~P 413 (451)
||+|+++..
T Consensus 150 fD~Ii~~~g 158 (322)
T PRK13943 150 YDVIFVTVG 158 (322)
T ss_pred ccEEEECCc
Confidence 999999643
No 76
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.98 E-value=1.9e-09 Score=99.84 Aligned_cols=76 Identities=14% Similarity=0.217 Sum_probs=66.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
+|.+|||+|||+|..+..++.. .+.++|+|+|+++.+++.+++++++.|+.+ ++++++|+.++. ..++||.|++++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~--~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQ--HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhcc--ccCCccEEEehh
Confidence 3889999999999999999865 445899999999999999999999999976 999999998863 246899999875
No 77
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.98 E-value=1.7e-09 Score=101.29 Aligned_cols=84 Identities=32% Similarity=0.502 Sum_probs=64.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.++|+.|+|++||.|.+++.+|.. ++...|+|+|+++..++.+++|++.++++++|.++++|++.+.. ...||+|++
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--EGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEE
Confidence 578999999999999999999985 34578999999999999999999999999999999999999875 578999999
Q ss_pred cCCCCCc
Q 012998 411 DAPCSGL 417 (451)
Q Consensus 411 D~PCSg~ 417 (451)
+.|-++.
T Consensus 176 ~lp~~~~ 182 (200)
T PF02475_consen 176 NLPESSL 182 (200)
T ss_dssp --TSSGG
T ss_pred CChHHHH
Confidence 9996654
No 78
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.98 E-value=2e-09 Score=109.84 Aligned_cols=80 Identities=18% Similarity=0.369 Sum_probs=68.2
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-------------
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS------------- 401 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~------------- 401 (451)
.+|||+|||+|.+++.++... ..|+|+|+++.+++.+++|++.+|++| ++++.+|+..+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGID 274 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccc
Confidence 479999999999999988763 589999999999999999999999986 999999998754310
Q ss_pred --CCCcCEEEEcCCCCCcc
Q 012998 402 --TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 402 --~~~fD~VlvD~PCSg~G 418 (451)
...||.|++|||.+|.+
T Consensus 275 ~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 275 LKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccCCCCEEEECCCCCCCc
Confidence 12389999999988754
No 79
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.98 E-value=1.6e-09 Score=100.97 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC---CCCcCEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 409 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~---~~~fD~Vl 409 (451)
+|.+|||+|||+|..++.++.. +...|+++|.++..++.+++|++.+++.++++++++|+..+.... ...||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEE
Confidence 5889999999999999999886 345899999999999999999999999766899999996643211 12489999
Q ss_pred EcCCCCC
Q 012998 410 LDAPCSG 416 (451)
Q Consensus 410 vD~PCSg 416 (451)
+|||...
T Consensus 127 ~DPPy~~ 133 (189)
T TIGR00095 127 LDPPFFN 133 (189)
T ss_pred ECcCCCC
Confidence 9999853
No 80
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.98 E-value=2.5e-09 Score=109.42 Aligned_cols=94 Identities=14% Similarity=0.056 Sum_probs=78.3
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEcCcccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN--SVIRTIHADLRT 396 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~--~~I~~~~~Da~~ 396 (451)
|..+.++...+....+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|++.++.. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 6778888888876667799999999999999999874 4589999999999999999999988754 247888888754
Q ss_pred ccccCCCCcCEEEEcCCCC
Q 012998 397 FADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~PCS 415 (451)
.. ...+||.|+++||.-
T Consensus 293 ~~--~~~~fDlIlsNPPfh 309 (378)
T PRK15001 293 GV--EPFRFNAVLCNPPFH 309 (378)
T ss_pred cC--CCCCEEEEEECcCcc
Confidence 32 235899999999975
No 81
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.97 E-value=2.9e-09 Score=109.43 Aligned_cols=97 Identities=21% Similarity=0.141 Sum_probs=75.1
Q ss_pred chhhhhhhhhC-CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 320 ESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 320 ~as~l~~~~l~-~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
+...++..++. +.++.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|+++++. ++.++++|+.+..
T Consensus 237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~ 313 (423)
T PRK14966 237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTD 313 (423)
T ss_pred cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccc
Confidence 33344444433 34677999999999999999887643 57999999999999999999999886 3899999986532
Q ss_pred ccCCCCcCEEEEcCCCCCccc
Q 012998 399 DNSTVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PCSg~G~ 419 (451)
....++||.|++|||....+-
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e 334 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGD 334 (423)
T ss_pred cccCCCccEEEECCCCCCcch
Confidence 112357999999999877653
No 82
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.97 E-value=3.2e-09 Score=105.21 Aligned_cols=84 Identities=23% Similarity=0.232 Sum_probs=72.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
+.+|||+|||+|..++.++...+ ..+|+|+|+++.+++.+++|++++++.+++.++++|+.... ...+||+|++|||
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--~~~~fDlIvsNPP 191 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--AGQKIDIIVSNPP 191 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--cCCCccEEEECCC
Confidence 36999999999999999998754 47999999999999999999999999767999999986532 2237999999999
Q ss_pred CCCcccc
Q 012998 414 CSGLGVL 420 (451)
Q Consensus 414 CSg~G~l 420 (451)
+.....+
T Consensus 192 yi~~~~~ 198 (284)
T TIGR00536 192 YIDEEDL 198 (284)
T ss_pred CCCcchh
Confidence 9877643
No 83
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.6e-09 Score=105.50 Aligned_cols=78 Identities=21% Similarity=0.231 Sum_probs=66.0
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCS 415 (451)
+|||+|||+|..++.++...+ ...|+|+|+|+..++.+++|++++|+.+ +.++.+|...-. .++||+|+++||.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~-~~~~~~dlf~~~---~~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVR-VLVVQSDLFEPL---RGKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCcc-EEEEeeeccccc---CCceeEEEeCCCCC
Confidence 799999999999999998754 3799999999999999999999999854 666666765432 35899999999987
Q ss_pred Ccc
Q 012998 416 GLG 418 (451)
Q Consensus 416 g~G 418 (451)
..-
T Consensus 188 p~~ 190 (280)
T COG2890 188 PAE 190 (280)
T ss_pred CCc
Confidence 654
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.96 E-value=4.4e-09 Score=97.53 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=75.0
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
.++....++...+++.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++|++++++.+ ++++.+|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchh
Confidence 344455566677788889999999999999999999874 45899999999999999999999999875 8899998743
Q ss_pred ccccCCCCcCEEEEcC
Q 012998 397 FADNSTVKCDKVLLDA 412 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~ 412 (451)
. ..++||+|+++.
T Consensus 93 ~---~~~~~D~v~~~~ 105 (187)
T PRK08287 93 E---LPGKADAIFIGG 105 (187)
T ss_pred h---cCcCCCEEEECC
Confidence 2 235799999864
No 85
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.92 E-value=5.3e-09 Score=102.36 Aligned_cols=85 Identities=16% Similarity=0.322 Sum_probs=69.4
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH---cCCCceEEEEcCcccccccc
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL---HQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~---~g~~~~I~~~~~Da~~~~~~ 400 (451)
.+...+.+.++++|||+|||+|..+..+++..++.+.|+|+|+|+.|++.++++... .+.. ++.++++|+..++ .
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp-~ 141 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLP-F 141 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCC-C
Confidence 344566778899999999999999999998876668999999999999999887642 2333 4899999998875 3
Q ss_pred CCCCcCEEEE
Q 012998 401 STVKCDKVLL 410 (451)
Q Consensus 401 ~~~~fD~Vlv 410 (451)
.+++||.|++
T Consensus 142 ~~~sfD~V~~ 151 (261)
T PLN02233 142 DDCYFDAITM 151 (261)
T ss_pred CCCCEeEEEE
Confidence 4578999986
No 86
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.5e-09 Score=102.40 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=79.8
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
|..|.++.+.+....+.+|||+|||.|..++.+++..+ ...|+-+|+|...++.+++|++.+++++. .++..|..+-.
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v 221 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV 221 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc
Confidence 78999999999988888999999999999999999865 68999999999999999999999999874 56666654432
Q ss_pred ccCCCCcCEEEEcCCCC
Q 012998 399 DNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PCS 415 (451)
.++||.|+++||--
T Consensus 222 ---~~kfd~IisNPPfh 235 (300)
T COG2813 222 ---EGKFDLIISNPPFH 235 (300)
T ss_pred ---cccccEEEeCCCcc
Confidence 24899999999954
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=5.5e-09 Score=102.07 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=76.2
Q ss_pred ecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 318 Qd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
|-..-.++...+.++||++|||+|||-|+.++++|+.. +.+|+|+++|++..+.+++.++..|+.++|++...|.+++
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 44455567778899999999999999999999999986 4899999999999999999999999997799999998877
Q ss_pred cccCCCCcCEEEE
Q 012998 398 ADNSTVKCDKVLL 410 (451)
Q Consensus 398 ~~~~~~~fD~Vlv 410 (451)
. +.||+|+.
T Consensus 135 ~----e~fDrIvS 143 (283)
T COG2230 135 E----EPFDRIVS 143 (283)
T ss_pred c----cccceeee
Confidence 5 45999973
No 88
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.89 E-value=4.7e-09 Score=101.55 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=80.2
Q ss_pred chhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc
Q 012998 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (451)
Q Consensus 320 ~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~ 399 (451)
...+++..++......+||++|++.|..|+++|..+++.|+|+++|.++++.+.+++++++.|+.++|+++.+|+.+..+
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 44555556666556679999999999999999999988899999999999999999999999999899999999987643
Q ss_pred cC------CCCcCEEEEcCC
Q 012998 400 NS------TVKCDKVLLDAP 413 (451)
Q Consensus 400 ~~------~~~fD~VlvD~P 413 (451)
.. .++||.||+|+-
T Consensus 146 ~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHhccccCCcccEEEecCC
Confidence 21 268999999974
No 89
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.88 E-value=9.3e-09 Score=95.51 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=60.3
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-------cc
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DN 400 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-------~~ 400 (451)
...+++|++|||+|||||+.+..++....+.++|+++|+++.+ +..+ +.++++|+.+.. ..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCChhHHHHHHHHh
Confidence 3456789999999999999999999987667899999999865 2233 677888876532 11
Q ss_pred CCCCcCEEEEcCCCCCccc
Q 012998 401 STVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 401 ~~~~fD~VlvD~PCSg~G~ 419 (451)
..++||+|++|+++...|.
T Consensus 95 ~~~~~D~V~~~~~~~~~g~ 113 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISGY 113 (188)
T ss_pred CCCCccEEEcCCCCCCCCC
Confidence 2457999999976544443
No 90
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.87 E-value=6.9e-09 Score=102.08 Aligned_cols=87 Identities=18% Similarity=0.291 Sum_probs=67.5
Q ss_pred ecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 318 Qd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
|...-..+...++++||++|||+|||.|+.+..+|+.. +.+|+++.+|+...+.+++.+++.|+.+++++...|.+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 44445567788899999999999999999999999985 4799999999999999999999999999999999998876
Q ss_pred cccCCCCcCEEEE
Q 012998 398 ADNSTVKCDKVLL 410 (451)
Q Consensus 398 ~~~~~~~fD~Vlv 410 (451)
+ .+||+|+.
T Consensus 125 ~----~~fD~IvS 133 (273)
T PF02353_consen 125 P----GKFDRIVS 133 (273)
T ss_dssp ------S-SEEEE
T ss_pred C----CCCCEEEE
Confidence 5 38999884
No 91
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.86 E-value=1.2e-08 Score=93.26 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=70.4
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
++..+++.++++|||+|||+|..|..+++. .++|+++|+++.+++.+++++.. .. +++++++|+..+.. ....
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~-~v~ii~~D~~~~~~-~~~~ 77 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--AD-NLTVIHGDALKFDL-PKLQ 77 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CC-CEEEEECchhcCCc-cccC
Confidence 445667788999999999999999999986 47899999999999999999864 33 48899999988753 2346
Q ss_pred cCEEEEcCCCC
Q 012998 405 CDKVLLDAPCS 415 (451)
Q Consensus 405 fD~VlvD~PCS 415 (451)
||.|+.|+|..
T Consensus 78 ~d~vi~n~Py~ 88 (169)
T smart00650 78 PYKVVGNLPYN 88 (169)
T ss_pred CCEEEECCCcc
Confidence 99999999975
No 92
>PRK14968 putative methyltransferase; Provisional
Probab=98.85 E-value=1.6e-08 Score=93.16 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=75.5
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEcCcccccccc
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFADN 400 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~-I~~~~~Da~~~~~~ 400 (451)
+.++...+...++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...++.++ +.++++|.....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 455556666678899999999999999999887 47999999999999999999999888654 778888876532
Q ss_pred CCCCcCEEEEcCCCCCcc
Q 012998 401 STVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 401 ~~~~fD~VlvD~PCSg~G 418 (451)
....||.|++++|+...+
T Consensus 87 ~~~~~d~vi~n~p~~~~~ 104 (188)
T PRK14968 87 RGDKFDVILFNPPYLPTE 104 (188)
T ss_pred cccCceEEEECCCcCCCC
Confidence 234799999999986543
No 93
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.85 E-value=1e-08 Score=96.57 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=67.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcc-ccccc-cCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL-RTFAD-NSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da-~~~~~-~~~~~fD~Vlv 410 (451)
++.+|||+|||+|..+..++...+ .+.|+|+|+++.+++.++++++..++.+ +.++++|+ ..++. ...+.||.|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHHHHHcCccccceEEE
Confidence 578999999999999999998764 4789999999999999999999999876 89999999 65542 23568999999
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
..|
T Consensus 118 ~~~ 120 (202)
T PRK00121 118 NFP 120 (202)
T ss_pred ECC
Confidence 754
No 94
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.85 E-value=1.3e-08 Score=99.90 Aligned_cols=83 Identities=13% Similarity=0.247 Sum_probs=71.6
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCE
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
...+.+|++|||+|||+|..++.++..++..++|+++|+++.+++.++++....|+.+ ++++.+|+..++ ..++.||.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~l~-~~~~~fD~ 149 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEALP-VADNSVDV 149 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhhCC-CCCCceeE
Confidence 3457789999999999999998888887777899999999999999999999999875 889999998765 23468999
Q ss_pred EEEcC
Q 012998 408 VLLDA 412 (451)
Q Consensus 408 VlvD~ 412 (451)
|+.+.
T Consensus 150 Vi~~~ 154 (272)
T PRK11873 150 IISNC 154 (272)
T ss_pred EEEcC
Confidence 99773
No 95
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.84 E-value=1.6e-08 Score=94.74 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=69.3
Q ss_pred hhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCC
Q 012998 323 GLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNST 402 (451)
Q Consensus 323 ~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~ 402 (451)
..+...+...++.+|||+|||+|..+.++++. ...|+|+|+|+.+++.+++++...++.+ +++..+|+..++. .
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~--~ 93 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTF--D 93 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCc--C
Confidence 34455666777889999999999999999985 3689999999999999999999999876 8888899876542 3
Q ss_pred CCcCEEEEc
Q 012998 403 VKCDKVLLD 411 (451)
Q Consensus 403 ~~fD~VlvD 411 (451)
+.||.|++-
T Consensus 94 ~~fD~I~~~ 102 (197)
T PRK11207 94 GEYDFILST 102 (197)
T ss_pred CCcCEEEEe
Confidence 679999863
No 96
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.84 E-value=1.1e-08 Score=105.25 Aligned_cols=89 Identities=21% Similarity=0.291 Sum_probs=72.5
Q ss_pred hhhhhhhhCCC-CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc
Q 012998 322 AGLVVAVVDPQ-PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 322 s~l~~~~l~~~-~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~ 400 (451)
+.+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+|+.+ ++++++|+..+...
T Consensus 45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~ 122 (382)
T PRK04338 45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh
Confidence 33444444433 457999999999999999988754 3589999999999999999999999986 77999999876432
Q ss_pred CCCCcCEEEEcCC
Q 012998 401 STVKCDKVLLDAP 413 (451)
Q Consensus 401 ~~~~fD~VlvD~P 413 (451)
...||+|++|||
T Consensus 123 -~~~fD~V~lDP~ 134 (382)
T PRK04338 123 -ERKFDVVDIDPF 134 (382)
T ss_pred -cCCCCEEEECCC
Confidence 357999999999
No 97
>PLN02244 tocopherol O-methyltransferase
Probab=98.84 E-value=1.4e-08 Score=103.09 Aligned_cols=76 Identities=20% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.++.+|||+|||+|+.+..+++.. .+.|+|+|+++.+++.++++++..|+.++++++++|+.+++ ..++.||+|++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s 192 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWS 192 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEE
Confidence 678999999999999999999875 47999999999999999999999998767999999998865 34578999987
No 98
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=1.1e-08 Score=99.63 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=68.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...|+.++++++++|+.++.....++||+|++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~ 119 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFH 119 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEeh
Confidence 45679999999999999999885 478999999999999999999999987678999999988754445789999975
Q ss_pred CC
Q 012998 412 AP 413 (451)
Q Consensus 412 ~P 413 (451)
..
T Consensus 120 ~v 121 (255)
T PRK11036 120 AV 121 (255)
T ss_pred hH
Confidence 43
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.84 E-value=1.5e-08 Score=102.78 Aligned_cols=91 Identities=12% Similarity=0.174 Sum_probs=75.3
Q ss_pred ecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 318 Qd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.|..+.++...+......+|||+|||+|..+..++...+ ..+|+++|+++.+++.++++++..++.. .++.+|+...
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~--~~~~~D~~~~ 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEG--EVFASNVFSD 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCC--EEEEcccccc
Confidence 366778888777766667999999999999999998743 4689999999999999999999999864 5677787543
Q ss_pred cccCCCCcCEEEEcCCC
Q 012998 398 ADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 398 ~~~~~~~fD~VlvD~PC 414 (451)
..++||.|+++||-
T Consensus 258 ---~~~~fDlIvsNPPF 271 (342)
T PRK09489 258 ---IKGRFDMIISNPPF 271 (342)
T ss_pred ---cCCCccEEEECCCc
Confidence 24689999999994
No 100
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.81 E-value=1.4e-08 Score=108.18 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
++.+|||+|||+|..++.++...+ ...|+|+|+|+.+++.+++|++.+|+.+++.++++|+.... ..++||+|++||
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--EKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--cCCCccEEEECC
Confidence 456899999999999999988764 47999999999999999999999998777999999976532 235799999999
Q ss_pred CCCCccc
Q 012998 413 PCSGLGV 419 (451)
Q Consensus 413 PCSg~G~ 419 (451)
|.....-
T Consensus 215 PYi~~~~ 221 (506)
T PRK01544 215 PYISHSE 221 (506)
T ss_pred CCCCchh
Confidence 9887654
No 101
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.5e-08 Score=95.56 Aligned_cols=94 Identities=18% Similarity=0.361 Sum_probs=83.6
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
..++.+.|++.||.+|++.|+|+|+.+..++..+++.|+++.+|..+.|.+.+.+.++..|+.+++++.+-|........
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 44677889999999999999999999999999999999999999999999999999999999988999999987643222
Q ss_pred -CCCcCEEEEcCCCC
Q 012998 402 -TVKCDKVLLDAPCS 415 (451)
Q Consensus 402 -~~~fD~VlvD~PCS 415 (451)
...+|.|++|.|--
T Consensus 174 ks~~aDaVFLDlPaP 188 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAP 188 (314)
T ss_pred cccccceEEEcCCCh
Confidence 46899999998754
No 102
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.81 E-value=2e-08 Score=99.82 Aligned_cols=96 Identities=15% Similarity=0.108 Sum_probs=79.2
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
++......++..+++.++++|||+|||+|..|..++.. .++|+|+|+|+.+++.+++++...+...+++++++|+..
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~ 96 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALK 96 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhh
Confidence 33334445666778889999999999999999999886 468999999999999999999988754459999999987
Q ss_pred ccccCCCCcCEEEEcCCCCCcc
Q 012998 397 FADNSTVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~PCSg~G 418 (451)
... ..||.|+.++|..-+.
T Consensus 97 ~~~---~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 97 TEF---PYFDVCVANVPYQISS 115 (294)
T ss_pred hcc---cccCEEEecCCcccCc
Confidence 542 4689999999987654
No 103
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=97.19 Aligned_cols=95 Identities=21% Similarity=0.234 Sum_probs=76.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc----cccccCCCCcCEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR----TFADNSTVKCDKV 408 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~----~~~~~~~~~fD~V 408 (451)
.+..+||+|||+|..++.++..++ .++|+|+|+++.++..+.+|++++++.+++.+++.+.. .-.+...+++|.+
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 456899999999999999999887 79999999999999999999999999999988855433 2222335789999
Q ss_pred EEcCCCCCccccc-cCCcccc
Q 012998 409 LLDAPCSGLGVLS-KRADLRW 428 (451)
Q Consensus 409 lvD~PCSg~G~lr-r~pd~~~ 428 (451)
+++||.-..--++ -+|+++-
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~ 247 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRL 247 (328)
T ss_pred ecCCCcccccchhhcCchhee
Confidence 9999986654333 2566653
No 104
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.80 E-value=2.2e-08 Score=95.21 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=76.3
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHHHHcCCCce--EEEEcCcccc
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-----GLVYAIDINKGRLRILNETAKLHQVNSV--IRTIHADLRT 396 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~-----g~V~AvDi~~~rl~~l~~~~~~~g~~~~--I~~~~~Da~~ 396 (451)
..+..|+|.+|++|||+|+|+|..|+.+...++.. ++|+.+|+|++||..++++.++.++... +.++++|+.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 45667889999999999999999999999998764 8999999999999999999999888765 8899999999
Q ss_pred ccccCCCCcCEEEE
Q 012998 397 FADNSTVKCDKVLL 410 (451)
Q Consensus 397 ~~~~~~~~fD~Vlv 410 (451)
++ ..+.+||...+
T Consensus 171 Lp-Fdd~s~D~yTi 183 (296)
T KOG1540|consen 171 LP-FDDDSFDAYTI 183 (296)
T ss_pred CC-CCCCcceeEEE
Confidence 87 56788998865
No 105
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.77 E-value=7e-09 Score=96.40 Aligned_cols=86 Identities=29% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC---CCCcCEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVL 409 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~---~~~fD~Vl 409 (451)
.-+.|+|..||.||-|++.|.. ...|+++|+++.++..+++|++-+|++++|+|++||+.++.... ...+|.|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeee
Confidence 4568999999999999999886 46899999999999999999999999999999999998764322 23578999
Q ss_pred EcCCCCCccccc
Q 012998 410 LDAPCSGLGVLS 421 (451)
Q Consensus 410 vD~PCSg~G~lr 421 (451)
.-||.+|.|-.+
T Consensus 171 ~sppwggp~y~~ 182 (263)
T KOG2730|consen 171 LSPPWGGPSYLR 182 (263)
T ss_pred cCCCCCCcchhh
Confidence 999999999654
No 106
>PHA03412 putative methyltransferase; Provisional
Probab=98.76 E-value=1.5e-08 Score=96.63 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS--GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~--~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.+.+|||+|||+|..++.++..+. +...|+|+|+++.+++.+++|+. + +.++++|+.... ..++||.|+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~-~~~~~~D~~~~~--~~~~FDlIIs 120 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----E-ATWINADALTTE--FDTLFDMAIS 120 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----C-CEEEEcchhccc--ccCCccEEEE
Confidence 477999999999999999998753 34699999999999999998853 2 678889987654 2468999999
Q ss_pred cCCCCCcc
Q 012998 411 DAPCSGLG 418 (451)
Q Consensus 411 D~PCSg~G 418 (451)
+||..-..
T Consensus 121 NPPY~~~~ 128 (241)
T PHA03412 121 NPPFGKIK 128 (241)
T ss_pred CCCCCCcc
Confidence 99987654
No 107
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.75 E-value=3.2e-08 Score=92.53 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~Vlv 410 (451)
.+.+|||+|||+|..+..+|... +.+.|+|+|+++.+++.+++++++.|+.| +.++++|+..+... ..+.||.|++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45699999999999999999875 45899999999999999999999999986 99999999876432 2358999999
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
+.|
T Consensus 94 ~~p 96 (194)
T TIGR00091 94 NFP 96 (194)
T ss_pred ECC
Confidence 976
No 108
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.75 E-value=2.4e-08 Score=83.00 Aligned_cols=71 Identities=24% Similarity=0.246 Sum_probs=58.5
Q ss_pred EEeecCCCchHHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 337 IVDCCAAPGGKTLYMASCL--SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~--~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
|||+|||+|..+..++... +...+++++|+++.+++.++++....+.+ ++++++|+.+++. ..++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~--~~~~~~D~~~l~~-~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPK--VRFVQADARDLPF-SDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTT--SEEEESCTTCHHH-HSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCc--eEEEECCHhHCcc-cCCCeeEEEE
Confidence 7999999999999999987 22379999999999999999999988873 7899999999764 3569999997
No 109
>PRK10742 putative methyltransferase; Provisional
Probab=98.74 E-value=4.5e-08 Score=93.89 Aligned_cols=92 Identities=21% Similarity=0.153 Sum_probs=79.2
Q ss_pred hhhhhhhhCCCCCC--eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc------CC--CceEEEEc
Q 012998 322 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH------QV--NSVIRTIH 391 (451)
Q Consensus 322 s~l~~~~l~~~~g~--~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~------g~--~~~I~~~~ 391 (451)
.+.++.++.+++|. +|||++||.|.-++.++.+ ++.|+++|.++.....+++++++. +. ..++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 45778899999998 9999999999999999987 567999999999999999999996 32 24589999
Q ss_pred CccccccccCCCCcCEEEEcCCCCC
Q 012998 392 ADLRTFADNSTVKCDKVLLDAPCSG 416 (451)
Q Consensus 392 ~Da~~~~~~~~~~fD~VlvD~PCSg 416 (451)
+|+..+.......||+|++|||...
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCCCC
Confidence 9998886544457999999999765
No 110
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.74 E-value=4.3e-08 Score=91.75 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=71.2
Q ss_pred hhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012998 310 LKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (451)
Q Consensus 310 ~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~ 389 (451)
|.++.+.... .+.-+...+...++.+|||+|||+|..+..+++. ...|+|+|+++.+++.++++++..|+. +.+
T Consensus 8 ~~~~~~~~~~-~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~ 81 (195)
T TIGR00477 8 YFHKKYGMTT-THSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRT 81 (195)
T ss_pred HHHHhhCCCC-chHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--cee
Confidence 3334444432 2333345666666789999999999999999975 469999999999999999999988885 667
Q ss_pred EcCccccccccCCCCcCEEEEcCC
Q 012998 390 IHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 390 ~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
...|....+ ..++||.|++-.+
T Consensus 82 ~~~d~~~~~--~~~~fD~I~~~~~ 103 (195)
T TIGR00477 82 DAYDINAAA--LNEDYDFIFSTVV 103 (195)
T ss_pred Eeccchhcc--ccCCCCEEEEecc
Confidence 777875543 2357999987554
No 111
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=5.6e-08 Score=97.06 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=76.5
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC-ccccccc
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFAD 399 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~-Da~~~~~ 399 (451)
-|...+.+..+++|+.|||=.|||||+.+.+.-. +..++|+|++..|++-++.|++.+|+++ ..+... |++.++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp- 259 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP- 259 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC-
Confidence 4566677788999999999999999998876544 4799999999999999999999999987 444555 999987
Q ss_pred cCCCCcCEEEEcCCCCCc
Q 012998 400 NSTVKCDKVLLDAPCSGL 417 (451)
Q Consensus 400 ~~~~~fD~VlvD~PCSg~ 417 (451)
....+||.|.+|||.--+
T Consensus 260 l~~~~vdaIatDPPYGrs 277 (347)
T COG1041 260 LRDNSVDAIATDPPYGRS 277 (347)
T ss_pred CCCCccceEEecCCCCcc
Confidence 334469999999997443
No 112
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.73 E-value=4.3e-08 Score=95.12 Aligned_cols=77 Identities=21% Similarity=0.265 Sum_probs=65.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~-~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
+.++.+|||+|||+|..+..++..+ .+.++|+++|+|+.|++.+++++...+..++++++++|+..++. ..+|.|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---~~~D~vv 130 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---ENASMVV 130 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC---CCCCEEe
Confidence 3478899999999999999988864 35689999999999999999999999887679999999987652 3588887
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
+
T Consensus 131 ~ 131 (247)
T PRK15451 131 L 131 (247)
T ss_pred h
Confidence 5
No 113
>PLN03075 nicotianamine synthase; Provisional
Probab=98.71 E-value=4.1e-08 Score=96.93 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=65.7
Q ss_pred CCCeEEeecCCCchHHHHH-HHHcCCCceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYM-ASCLSGQGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~l-a~~~~~~g~V~AvDi~~~rl~~l~~~~~~-~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
++.+|+|+|||||+.|..+ ++...+.++++++|+++.+++.+++++.+ .|+.++|+|..+|+.+.... .+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 6789999999999876654 44455678999999999999999999965 89988899999999886422 368999999
Q ss_pred c
Q 012998 411 D 411 (451)
Q Consensus 411 D 411 (451)
+
T Consensus 202 ~ 202 (296)
T PLN03075 202 A 202 (296)
T ss_pred e
Confidence 9
No 114
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=4.3e-08 Score=98.45 Aligned_cols=83 Identities=28% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..+|++|+||.||-|.+|+.+|..- ..+|+|+|+|+..++.+++|++.+++.++|..+++|++.+.... +.||.|++
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim 262 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIM 262 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEe
Confidence 4569999999999999999999873 33499999999999999999999999998999999999987543 78999999
Q ss_pred cCCCCC
Q 012998 411 DAPCSG 416 (451)
Q Consensus 411 D~PCSg 416 (451)
.-|-+.
T Consensus 263 ~~p~~a 268 (341)
T COG2520 263 GLPKSA 268 (341)
T ss_pred CCCCcc
Confidence 999763
No 115
>PHA03411 putative methyltransferase; Provisional
Probab=98.70 E-value=5.5e-08 Score=94.83 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=69.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
.+.++.+|||+|||+|..++.++...+ ..+|+++|+++.+++.+++++ . .+.++++|+..+.. ..+||.|+
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcc--cCCCcEEE
Confidence 445567999999999999998887643 368999999999999998864 2 37789999988752 36899999
Q ss_pred EcCCCCCccccccCCcccc
Q 012998 410 LDAPCSGLGVLSKRADLRW 428 (451)
Q Consensus 410 vD~PCSg~G~lrr~pd~~~ 428 (451)
+|||.-....-.+....+|
T Consensus 132 sNPPF~~l~~~d~~~~~~~ 150 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEY 150 (279)
T ss_pred EcCCccccCchhhhhhhhh
Confidence 9999877655444333333
No 116
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.69 E-value=7e-08 Score=94.31 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=74.1
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
+.......++..+++.++++|||+|||+|..|..+++. ..+|+++|+++.+++.+++++.. .. +++++++|+..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~-~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AG-NVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CC-CEEEEEecccc
Confidence 33334455666778888999999999999999999987 36899999999999999998865 33 48999999987
Q ss_pred ccccCCCCcCEEEEcCCCCC
Q 012998 397 FADNSTVKCDKVLLDAPCSG 416 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~PCSg 416 (451)
++. ..||.|+.++|..-
T Consensus 87 ~~~---~~~d~Vv~NlPy~i 103 (258)
T PRK14896 87 VDL---PEFNKVVSNLPYQI 103 (258)
T ss_pred CCc---hhceEEEEcCCccc
Confidence 642 35899999999753
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.68 E-value=8.4e-08 Score=95.27 Aligned_cols=88 Identities=17% Similarity=0.202 Sum_probs=68.2
Q ss_pred hhhhhhhhhC--CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 321 SAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 321 as~l~~~~l~--~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
.+.+...++. ..+|.+|||+|||+|..++.++.. +.++|+|+|+++.+++.+++|+..+++.+.+.+...|....
T Consensus 145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~- 221 (288)
T TIGR00406 145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP- 221 (288)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence 4444444443 457899999999999999887764 34699999999999999999999999987677777663322
Q ss_pred ccCCCCcCEEEEcCC
Q 012998 399 DNSTVKCDKVLLDAP 413 (451)
Q Consensus 399 ~~~~~~fD~VlvD~P 413 (451)
..++||+|+++..
T Consensus 222 --~~~~fDlVvan~~ 234 (288)
T TIGR00406 222 --IEGKADVIVANIL 234 (288)
T ss_pred --cCCCceEEEEecC
Confidence 2468999999864
No 118
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=5.2e-08 Score=96.06 Aligned_cols=89 Identities=17% Similarity=0.258 Sum_probs=68.2
Q ss_pred chhhhhhhhhC--CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 320 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 320 ~as~l~~~~l~--~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
+...+..++|+ .++|.+|||+|||+|-.++.++.+ +...|+|+|+++..++.+++|+.++|++..++....+....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~ 224 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV 224 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence 45566666665 468999999999999999887776 46789999999999999999999999985333333333333
Q ss_pred cccCCCCcCEEEEcC
Q 012998 398 ADNSTVKCDKVLLDA 412 (451)
Q Consensus 398 ~~~~~~~fD~VlvD~ 412 (451)
+ ..++||+|+++-
T Consensus 225 ~--~~~~~DvIVANI 237 (300)
T COG2264 225 P--ENGPFDVIVANI 237 (300)
T ss_pred c--ccCcccEEEehh
Confidence 2 135899999874
No 119
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.66 E-value=7.2e-08 Score=94.97 Aligned_cols=87 Identities=22% Similarity=0.256 Sum_probs=69.9
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...++..+++.+|++|||+|||+|..|..++... .+|+|+|+++.+++.+++++.. + +++++++|+..++..
T Consensus 31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~-~v~~i~~D~~~~~~~- 102 (272)
T PRK00274 31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---D-NLTIIEGDALKVDLS- 102 (272)
T ss_pred HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---C-ceEEEEChhhcCCHH-
Confidence 3445566788889999999999999999999872 4899999999999999987743 3 489999999887421
Q ss_pred CCCcCEEEEcCCCCC
Q 012998 402 TVKCDKVLLDAPCSG 416 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg 416 (451)
...+|.|+.++|..-
T Consensus 103 ~~~~~~vv~NlPY~i 117 (272)
T PRK00274 103 ELQPLKVVANLPYNI 117 (272)
T ss_pred HcCcceEEEeCCccc
Confidence 111599999999744
No 120
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.66 E-value=7.2e-08 Score=98.78 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=69.3
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PC 414 (451)
-+|||++||+|..++.++...++...|+++|+++..++.+++|++.+++.+ ++++++|+..+......+||+|.+||+=
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~-~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVEN-IEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 489999999999999999876555789999999999999999999999986 8899999988764334679999999973
No 121
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.66 E-value=1.4e-07 Score=89.31 Aligned_cols=69 Identities=29% Similarity=0.423 Sum_probs=56.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-------ccCCCC
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------DNSTVK 404 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-------~~~~~~ 404 (451)
++|.+|||+|||||..|..+++..++.+.|+|+|+++. .++.+ ++++++|+.+.. ....++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~-v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVG-VDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCC-cEEEecCCCChHHHHHHHHHhCCCC
Confidence 57889999999999999999999877789999999981 23444 789999998742 123568
Q ss_pred cCEEEEcC
Q 012998 405 CDKVLLDA 412 (451)
Q Consensus 405 fD~VlvD~ 412 (451)
||+|++|+
T Consensus 118 ~D~V~S~~ 125 (209)
T PRK11188 118 VQVVMSDM 125 (209)
T ss_pred CCEEecCC
Confidence 99999985
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.66 E-value=1e-07 Score=97.44 Aligned_cols=86 Identities=15% Similarity=0.270 Sum_probs=73.3
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcC
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCD 406 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD 406 (451)
.+....+..+||+|||+|..++++|... +...++|+|+++.+++.+.+++...|++| |.++++|+..+.. ..+++||
T Consensus 117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D 194 (390)
T PRK14121 117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVE 194 (390)
T ss_pred HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCcee
Confidence 3445567899999999999999999986 45899999999999999999999999987 9999999976532 2357899
Q ss_pred EEEEcCCCC
Q 012998 407 KVLLDAPCS 415 (451)
Q Consensus 407 ~VlvD~PCS 415 (451)
.|++.-|+-
T Consensus 195 ~I~lnFPdP 203 (390)
T PRK14121 195 KIFVHFPVP 203 (390)
T ss_pred EEEEeCCCC
Confidence 999987764
No 123
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.66 E-value=8.8e-08 Score=96.02 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEc-Ccccccccc---CCCCcCE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIH-ADLRTFADN---STVKCDK 407 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~-g~~~~I~~~~-~Da~~~~~~---~~~~fD~ 407 (451)
++.+|||+|||+|+....++.... ...++|+|+++..++.+++|++.+ ++.++|.++. .|...+... ..+.||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 567999999999999998887755 479999999999999999999999 8988888753 444333221 2468999
Q ss_pred EEEcCCCCCccc
Q 012998 408 VLLDAPCSGLGV 419 (451)
Q Consensus 408 VlvD~PCSg~G~ 419 (451)
|+|+||.-.++-
T Consensus 193 ivcNPPf~~s~~ 204 (321)
T PRK11727 193 TLCNPPFHASAA 204 (321)
T ss_pred EEeCCCCcCcch
Confidence 999999765543
No 124
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.65 E-value=1.2e-07 Score=90.04 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.++.+|||+|||+|..+..++.. ...|+|+|+++.++..+++++...+..+.+.+.++|+...+ ++||+|++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVC 125 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEE
Confidence 457899999999999999999875 36899999999999999999988887556899999987754 57998875
No 125
>PRK04457 spermidine synthase; Provisional
Probab=98.65 E-value=9.4e-08 Score=93.61 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=68.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.++.+|||+|||.|..+..++...+ ..+|+++|+++..++.+++++...+...+++++.+|+..+.....++||+|++|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3567999999999999999988864 589999999999999999998766554569999999987754445689999999
Q ss_pred CC
Q 012998 412 AP 413 (451)
Q Consensus 412 ~P 413 (451)
+-
T Consensus 144 ~~ 145 (262)
T PRK04457 144 GF 145 (262)
T ss_pred CC
Confidence 73
No 126
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.64 E-value=8e-08 Score=95.32 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=63.6
Q ss_pred chhhhhhhhhC--CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 320 ESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 320 ~as~l~~~~l~--~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
+++++...++. ..+|.+|||+|||+|-.++..+.+ +.++|+|+|+++..++.+++|++.+|+.+++.+. ...+.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~ 221 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL 221 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence 35556666554 567899999999999999877665 4578999999999999999999999999876553 21222
Q ss_pred cccCCCCcCEEEEc
Q 012998 398 ADNSTVKCDKVLLD 411 (451)
Q Consensus 398 ~~~~~~~fD~VlvD 411 (451)
..++||+|+.+
T Consensus 222 ---~~~~~dlvvAN 232 (295)
T PF06325_consen 222 ---VEGKFDLVVAN 232 (295)
T ss_dssp ---CCS-EEEEEEE
T ss_pred ---ccccCCEEEEC
Confidence 23789999976
No 127
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.64 E-value=1e-07 Score=95.86 Aligned_cols=77 Identities=23% Similarity=0.254 Sum_probs=64.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
.+.+|.+|||+|||+|..+..++.. ++.|+|+|+++++++.+++++...+....|.++++|+.+++. ..++||+|+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~~~~FD~Vi 203 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-EGRKFDAVL 203 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-ccCCCCEEE
Confidence 3457889999999999999988863 479999999999999999988766654458999999988753 357899998
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
+
T Consensus 204 ~ 204 (322)
T PLN02396 204 S 204 (322)
T ss_pred E
Confidence 5
No 128
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.63 E-value=1.5e-07 Score=91.55 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=69.4
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
.|..-+..+...+.+.++.+|||+|||+|..+..++...+ .+.|+++|+++.+++.++++. .+ +.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~~-~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----PD-CQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----CC-CeEEECchhc
Confidence 3444454555666778899999999999999999998764 579999999999999998774 23 6788899876
Q ss_pred ccccCCCCcCEEEEcCC
Q 012998 397 FADNSTVKCDKVLLDAP 413 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~P 413 (451)
+. ...+||+|+++..
T Consensus 88 ~~--~~~~fD~v~~~~~ 102 (258)
T PRK01683 88 WQ--PPQALDLIFANAS 102 (258)
T ss_pred cC--CCCCccEEEEccC
Confidence 64 2358999998754
No 129
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.62 E-value=1.8e-07 Score=90.16 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=65.1
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.++.+|||+|||+|..+..++.... +.++|+++|+++.+++.++++++..+...+++++++|+..++. ..+|.|++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~d~v~~ 128 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI---KNASMVIL 128 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC---CCCCEEee
Confidence 4788999999999999999998753 4689999999999999999999988765568999999987652 35888775
Q ss_pred c
Q 012998 411 D 411 (451)
Q Consensus 411 D 411 (451)
.
T Consensus 129 ~ 129 (239)
T TIGR00740 129 N 129 (239)
T ss_pred e
Confidence 3
No 130
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.61 E-value=2.2e-07 Score=88.57 Aligned_cols=85 Identities=16% Similarity=0.308 Sum_probs=70.7
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
+...+...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+..+.+.++.+|+...+. ..+.
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~ 121 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-PDNS 121 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-CCCC
Confidence 445556677899999999999999999988654589999999999999999999887766668899999987652 3468
Q ss_pred cCEEEE
Q 012998 405 CDKVLL 410 (451)
Q Consensus 405 fD~Vlv 410 (451)
||+|++
T Consensus 122 ~D~I~~ 127 (239)
T PRK00216 122 FDAVTI 127 (239)
T ss_pred ccEEEE
Confidence 999986
No 131
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.60 E-value=1.7e-07 Score=91.90 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=73.6
Q ss_pred hhhcCceeeecc-hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 012998 309 LLKEGLCAVQDE-SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (451)
Q Consensus 309 ~~~~G~~~vQd~-as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I 387 (451)
.|-.|++..... .+..++..+.+.++.+|||+|||+|+.+..++... .++|+++|+++.+++.+++++.. .+++
T Consensus 27 ~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i 101 (263)
T PTZ00098 27 IFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKI 101 (263)
T ss_pred HhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCce
Confidence 344566665432 34445566788899999999999999999998753 46999999999999999988754 2358
Q ss_pred EEEcCccccccccCCCCcCEEEE
Q 012998 388 RTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 388 ~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.+.++|+...+ ..+++||+|++
T Consensus 102 ~~~~~D~~~~~-~~~~~FD~V~s 123 (263)
T PTZ00098 102 EFEANDILKKD-FPENTFDMIYS 123 (263)
T ss_pred EEEECCcccCC-CCCCCeEEEEE
Confidence 89999987653 23468999998
No 132
>PLN02672 methionine S-methyltransferase
Probab=98.60 E-value=1.4e-07 Score=107.16 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=70.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC---------------ceEEEEcCcccccc
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN---------------SVIRTIHADLRTFA 398 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~---------------~~I~~~~~Da~~~~ 398 (451)
+.+|||+|||+|..++.++...+ .++|+|+|+|+.+++.+++|++.++++ ++|+++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46899999999999999998864 479999999999999999999987542 46899999987654
Q ss_pred ccCCCCcCEEEEcCCCCCccc
Q 012998 399 DNSTVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PCSg~G~ 419 (451)
.....+||+|+.+||.-..+-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e 218 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPN 218 (1082)
T ss_pred cccCCceEEEEECCCcCCCcc
Confidence 221236999999999887764
No 133
>PRK08317 hypothetical protein; Provisional
Probab=98.59 E-value=2.8e-07 Score=87.58 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=67.2
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
...+.+.++.+|||+|||+|..+..++..+++.+.|+++|+++.+++.++++....+ ..+.+..+|+..++ ...+.|
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~-~~~~~~ 88 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--PNVEFVRGDADGLP-FPDGSF 88 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--CceEEEecccccCC-CCCCCc
Confidence 345677889999999999999999999988666899999999999999998843322 34888889987654 234689
Q ss_pred CEEEEc
Q 012998 406 DKVLLD 411 (451)
Q Consensus 406 D~VlvD 411 (451)
|.|+++
T Consensus 89 D~v~~~ 94 (241)
T PRK08317 89 DAVRSD 94 (241)
T ss_pred eEEEEe
Confidence 999875
No 134
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.58 E-value=1.8e-07 Score=91.16 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=63.3
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
+...+.+.++.+|||+|||+|..+..++...+ .++|+++|+++.+++.++++ + +.++++|+..+. ..++
T Consensus 21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~-------~-~~~~~~d~~~~~--~~~~ 89 (255)
T PRK14103 21 LLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER-------G-VDARTGDVRDWK--PKPD 89 (255)
T ss_pred HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc-------C-CcEEEcChhhCC--CCCC
Confidence 34556677889999999999999999998763 57999999999999988652 2 567889998764 2468
Q ss_pred cCEEEEcCC
Q 012998 405 CDKVLLDAP 413 (451)
Q Consensus 405 fD~VlvD~P 413 (451)
||+|++...
T Consensus 90 fD~v~~~~~ 98 (255)
T PRK14103 90 TDVVVSNAA 98 (255)
T ss_pred ceEEEEehh
Confidence 999998654
No 135
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.55 E-value=1.4e-07 Score=91.51 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=68.8
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
+|...+..+...+...++.+|||+|||+|..+..++.. ...|+++|+++.+++.++++... +.++++|+..
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~ 96 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAA------DHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCC------CCEEEcCccc
Confidence 67778888878887767889999999999999888764 47999999999999998877431 3467889887
Q ss_pred ccccCCCCcCEEEEcC
Q 012998 397 FADNSTVKCDKVLLDA 412 (451)
Q Consensus 397 ~~~~~~~~fD~VlvD~ 412 (451)
++ ..+++||.|++..
T Consensus 97 ~~-~~~~~fD~V~s~~ 111 (251)
T PRK10258 97 LP-LATATFDLAWSNL 111 (251)
T ss_pred Cc-CCCCcEEEEEECc
Confidence 65 3356899998754
No 136
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.6e-08 Score=83.42 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=72.8
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
-.|..++|+|||.|..++.. .|...-.|+++|+++..++...+|++...+. +.++++|...+-.. .+.||.++.|
T Consensus 47 iEgkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEEec
Confidence 46899999999999988544 3445578999999999999999999999885 57889998776432 4789999999
Q ss_pred CCCCCccccccCCcccc
Q 012998 412 APCSGLGVLSKRADLRW 428 (451)
Q Consensus 412 ~PCSg~G~lrr~pd~~~ 428 (451)
|| .|+=.++.|..+
T Consensus 122 pp---FGTk~~~aDm~f 135 (185)
T KOG3420|consen 122 PP---FGTKKKGADMEF 135 (185)
T ss_pred CC---CCcccccccHHH
Confidence 99 788666666654
No 137
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.53 E-value=3.3e-07 Score=89.11 Aligned_cols=71 Identities=24% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.++.+|||+|||+|..++.++.. + ...|+|+|+|+.+++.+++|++..++.+.+.+..+|. +||+|++
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vva 185 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVA 185 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEE
Confidence 457899999999999988876653 3 3579999999999999999999999855455444332 6999998
Q ss_pred cC
Q 012998 411 DA 412 (451)
Q Consensus 411 D~ 412 (451)
+.
T Consensus 186 ni 187 (250)
T PRK00517 186 NI 187 (250)
T ss_pred cC
Confidence 74
No 138
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.53 E-value=3.8e-07 Score=90.48 Aligned_cols=78 Identities=27% Similarity=0.269 Sum_probs=63.8
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCE
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
.+...++.+|||+|||+|..+..++.. +..|+|+|+|+.+++.++++++..++ + +.+...|+.... ..++||+
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~--~~~~fD~ 187 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSAS--IQEEYDF 187 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhccc--ccCCccE
Confidence 333334569999999999999999885 47999999999999999999999998 4 788888886643 2578999
Q ss_pred EEEcC
Q 012998 408 VLLDA 412 (451)
Q Consensus 408 VlvD~ 412 (451)
|++-.
T Consensus 188 I~~~~ 192 (287)
T PRK12335 188 ILSTV 192 (287)
T ss_pred EEEcc
Confidence 98754
No 139
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.53 E-value=1.5e-07 Score=89.27 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=63.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
-+|.+|||+|||-|..+..||+. +..|+|+|++++.++.++..+...|+. |.+.+....++... .++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-GGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-CCCccEEEE
Confidence 47999999999999999999987 489999999999999999999999986 66777777776532 379999997
No 140
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.53 E-value=2.5e-07 Score=87.29 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
...++.+|||+|||+|..+..++...+ .+.|+|+|+|+.+++.+++++. + +.+.++|+.. + ..+++||+|+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~-----~-~~~~~~d~~~-~-~~~~sfD~V~ 110 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP-----N-INIIQGSLFD-P-FKDNFFDLVL 110 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC-----C-CcEEEeeccC-C-CCCCCEEEEE
Confidence 345678999999999999999988754 4799999999999999988642 2 5567788776 2 3457899999
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
+
T Consensus 111 ~ 111 (204)
T TIGR03587 111 T 111 (204)
T ss_pred E
Confidence 5
No 141
>PRK06202 hypothetical protein; Provisional
Probab=98.52 E-value=2.7e-07 Score=88.48 Aligned_cols=78 Identities=14% Similarity=0.078 Sum_probs=57.8
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~---~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
+...++.+|||+|||+|..+..++.... ...+|+|+|+++.+++.++++....++ .+...|+..++. .+++|
T Consensus 56 l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~----~~~~~~~~~l~~-~~~~f 130 (232)
T PRK06202 56 LSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV----TFRQAVSDELVA-EGERF 130 (232)
T ss_pred cCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC----eEEEEecccccc-cCCCc
Confidence 3445678999999999999999887643 235899999999999999888765544 344445444432 34789
Q ss_pred CEEEEc
Q 012998 406 DKVLLD 411 (451)
Q Consensus 406 D~VlvD 411 (451)
|+|++.
T Consensus 131 D~V~~~ 136 (232)
T PRK06202 131 DVVTSN 136 (232)
T ss_pred cEEEEC
Confidence 999973
No 142
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.50 E-value=2.6e-07 Score=74.64 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=53.9
Q ss_pred EeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 338 LDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
||+|||+|..+..+++. +...|+++|+++.+++.++++....+ +.+.++|+..++ ..+++||.|++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~-~~~~sfD~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLP-FPDNSFDVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSS-S-TT-EEEEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCc-ccccccccccc
Confidence 89999999999999997 46899999999999999999887655 448899999885 45689999986
No 143
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.50 E-value=1.9e-06 Score=86.46 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=59.5
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcC
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD 406 (451)
..+.+.+|.+|||+|||+|..+..++.. +...|+|+|.|+.++..++...+..+....+.+...|+.+++. ...||
T Consensus 115 ~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~--~~~FD 190 (314)
T TIGR00452 115 PHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE--LYAFD 190 (314)
T ss_pred HhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--CCCcC
Confidence 3456778999999999999999888765 3358999999999987654433333333357788888887763 25799
Q ss_pred EEEE
Q 012998 407 KVLL 410 (451)
Q Consensus 407 ~Vlv 410 (451)
.|++
T Consensus 191 ~V~s 194 (314)
T TIGR00452 191 TVFS 194 (314)
T ss_pred EEEE
Confidence 9995
No 144
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.49 E-value=7e-07 Score=83.08 Aligned_cols=77 Identities=29% Similarity=0.260 Sum_probs=61.5
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcC
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD 406 (451)
..++.-++.++||+|||.|.-++.+|++ +-.|+|+|+|+..++.+++.+++.+++ |++...|...+. .++.||
T Consensus 24 ~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~--~~~~yD 96 (192)
T PF03848_consen 24 EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD--FPEEYD 96 (192)
T ss_dssp HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTEE
T ss_pred HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc--ccCCcC
Confidence 4455556779999999999999999996 468999999999999999999999997 888999987764 246799
Q ss_pred EEEE
Q 012998 407 KVLL 410 (451)
Q Consensus 407 ~Vlv 410 (451)
.|+.
T Consensus 97 ~I~s 100 (192)
T PF03848_consen 97 FIVS 100 (192)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9975
No 145
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.49 E-value=5.1e-07 Score=72.77 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=64.0
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCS 415 (451)
+|+|+|||+|..+..++. .+...++++|+++..+..+++.....+.. .+.++..|..........+||.|+++.+|.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhhccccCCceEEEEEcccee
Confidence 589999999999998887 34679999999999999998655545544 488999998876542346899999999998
Q ss_pred Cc
Q 012998 416 GL 417 (451)
Q Consensus 416 g~ 417 (451)
..
T Consensus 78 ~~ 79 (107)
T cd02440 78 HL 79 (107)
T ss_pred eh
Confidence 74
No 146
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=5.4e-07 Score=84.84 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=82.8
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
+-++..+++..++......++||+|.-+|..++.+|..++..|+|+++|+++...+...+..+..|+...|+++++++.+
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e 136 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE 136 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence 33445566666777667789999999999999999999999999999999999999999999999999999999999865
Q ss_pred cc-----ccCCCCcCEEEEcCC
Q 012998 397 FA-----DNSTVKCDKVLLDAP 413 (451)
Q Consensus 397 ~~-----~~~~~~fD~VlvD~P 413 (451)
-. +...+.||.+|+|+-
T Consensus 137 sLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 137 SLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred hHHHHHhcCCCCceeEEEEccc
Confidence 32 223578999999974
No 147
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.48 E-value=5.3e-07 Score=85.91 Aligned_cols=73 Identities=22% Similarity=0.155 Sum_probs=61.4
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+..+++.+..+|... ..+.||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----LLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----ccCCcCEEEEc
Confidence 56789999999999999999875 357999999999999999999988885568899999432 23679999874
No 148
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.2e-07 Score=89.98 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=76.3
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCC-------------------------------c-------eEEEEeC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ-------------------------------G-------LVYAIDI 366 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~-------------------------------g-------~V~AvDi 366 (451)
++.+.+-+++..++|--||+|.+.+..|.+..+- + .++|+|+
T Consensus 183 il~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Di 262 (381)
T COG0116 183 ILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDI 262 (381)
T ss_pred HHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecC
Confidence 3345567788899999999999999888765321 1 4789999
Q ss_pred CHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCC
Q 012998 367 NKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 367 ~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCS 415 (451)
++.+++.++.|+++.|+.+.|++.++|+..+.... +.+|+|++|||.-
T Consensus 263 d~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYG 310 (381)
T COG0116 263 DPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYG 310 (381)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcc
Confidence 99999999999999999999999999999987543 7899999999973
No 149
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.47 E-value=6.6e-07 Score=94.92 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=67.5
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...++..+.+.++.+|||+|||+|..+..++... .++|+|+|+|+.+++.++++... ...++++.++|+...+ ..
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~--~~~~v~~~~~d~~~~~-~~ 329 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG--RKCSVEFEVADCTKKT-YP 329 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc--CCCceEEEEcCcccCC-CC
Confidence 3445556667789999999999999999998865 46899999999999999988763 3345899999987754 23
Q ss_pred CCCcCEEEE
Q 012998 402 TVKCDKVLL 410 (451)
Q Consensus 402 ~~~fD~Vlv 410 (451)
+++||+|++
T Consensus 330 ~~~fD~I~s 338 (475)
T PLN02336 330 DNSFDVIYS 338 (475)
T ss_pred CCCEEEEEE
Confidence 468999997
No 150
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.46 E-value=8.3e-07 Score=89.54 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=62.8
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
+...+.+.+|.+|||+|||+|..+..++.. +...|+|+|.++.++...+...+..+...+|.++.+|+.+++. .+.
T Consensus 114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~--g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--~~~ 189 (322)
T PRK15068 114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA--GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--LKA 189 (322)
T ss_pred HHHhhCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--cCC
Confidence 344566667899999999999999999886 3357999999999887654444433333358899999988764 578
Q ss_pred cCEEEE
Q 012998 405 CDKVLL 410 (451)
Q Consensus 405 fD~Vlv 410 (451)
||.|++
T Consensus 190 FD~V~s 195 (322)
T PRK15068 190 FDTVFS 195 (322)
T ss_pred cCEEEE
Confidence 999995
No 151
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.45 E-value=6.6e-07 Score=89.81 Aligned_cols=71 Identities=21% Similarity=0.210 Sum_probs=57.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC----ceEEEEcCccccccccCCCCcCEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN----SVIRTIHADLRTFADNSTVKCDKV 408 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~----~~I~~~~~Da~~~~~~~~~~fD~V 408 (451)
+|.+|||+|||+|..+..++.. +..|+|+|+++.+++.++++++..+.. ..+.+...|+..+ .++||.|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEE
Confidence 5789999999999999999975 368999999999999999998876321 2367888887654 3679988
Q ss_pred EE
Q 012998 409 LL 410 (451)
Q Consensus 409 lv 410 (451)
++
T Consensus 217 v~ 218 (315)
T PLN02585 217 TC 218 (315)
T ss_pred EE
Confidence 74
No 152
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.45 E-value=6e-07 Score=92.61 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=65.4
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~ 400 (451)
....+...+++++|++|||+|||+|+.+.+++... +++|+++|+|+.+++.++++++ ++ .+++...|...+
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--- 225 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--- 225 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---
Confidence 34456667788999999999999999999999874 3699999999999999999885 33 267788887665
Q ss_pred CCCCcCEEEE
Q 012998 401 STVKCDKVLL 410 (451)
Q Consensus 401 ~~~~fD~Vlv 410 (451)
.++||.|++
T Consensus 226 -~~~fD~Ivs 234 (383)
T PRK11705 226 -NGQFDRIVS 234 (383)
T ss_pred -CCCCCEEEE
Confidence 367999975
No 153
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=2.5e-07 Score=95.85 Aligned_cols=91 Identities=15% Similarity=0.248 Sum_probs=75.4
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV 403 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~ 403 (451)
+-+.++...+..+||+|||+|.+++.+|.. .++|+++++++..++-++.|++.+|++| .+|+++.++++.... ..
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhccc
Confidence 335567788899999999999999998875 5789999999999999999999999998 899999777654322 12
Q ss_pred ---CcC-EEEEcCCCCCccc
Q 012998 404 ---KCD-KVLLDAPCSGLGV 419 (451)
Q Consensus 404 ---~fD-~VlvD~PCSg~G~ 419 (451)
.-+ ++++|||..|.-.
T Consensus 451 ~~~~~~~v~iiDPpR~Glh~ 470 (534)
T KOG2187|consen 451 CCDSETLVAIIDPPRKGLHM 470 (534)
T ss_pred CCCCCceEEEECCCcccccH
Confidence 335 8999999988653
No 154
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.43 E-value=9.2e-07 Score=84.09 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=62.9
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.+|||+|||+|+.+..+++..+ ...|+++|+++.+++.++++++..|+.++++++..|+...+ ..++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--FPDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--CCCCCCEeeh
Confidence 3799999999999999998764 47899999999999999999999999888999999986543 2357999985
No 155
>PRK00811 spermidine synthase; Provisional
Probab=98.42 E-value=9.1e-07 Score=87.65 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C--CceEEEEcCccccccccCCCCcCEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V--NSVIRTIHADLRTFADNSTVKCDKV 408 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~--~~~I~~~~~Da~~~~~~~~~~fD~V 408 (451)
.+.+|||+|||.|+.+..++.. .+..+|++||+++.+++.+++.+...+ . +.+++++.+|+..+.....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4579999999999999988865 334689999999999999999987653 2 3468999999988765445789999
Q ss_pred EEcCC
Q 012998 409 LLDAP 413 (451)
Q Consensus 409 lvD~P 413 (451)
++|.+
T Consensus 155 i~D~~ 159 (283)
T PRK00811 155 IVDST 159 (283)
T ss_pred EECCC
Confidence 99963
No 156
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.42 E-value=4.6e-07 Score=90.72 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=74.4
Q ss_pred CceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHc------CCCceEEEEeCCHHHHHHHHHHHHHcCCCce
Q 012998 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCL------SGQGLVYAIDINKGRLRILNETAKLHQVNSV 386 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~------~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~ 386 (451)
|.|+--..-+.+++.++.+.++++|+|-|||+|++.+.+...+ .....++|+|+++..+..++-|+.-.|+...
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 4554445566788889999999999999999999998888754 2457899999999999999999877776442
Q ss_pred -EEEEcCccccccccC-CCCcCEEEEcCCCCCcc
Q 012998 387 -IRTIHADLRTFADNS-TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 387 -I~~~~~Da~~~~~~~-~~~fD~VlvD~PCSg~G 418 (451)
..+..+|....+... ...||+|+.+||-+..+
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--CTCES
T ss_pred cccccccccccccccccccccccccCCCCccccc
Confidence 346778876544332 46899999999988873
No 157
>PRK06922 hypothetical protein; Provisional
Probab=98.41 E-value=9.8e-07 Score=95.07 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=67.4
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCc
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKC 405 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~f 405 (451)
..++..+|.+|||+|||+|..+..++...+ .+.|+|+|+++.+++.+++++...+. .+.++++|+.+++. ..+++|
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSF 488 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESV 488 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCE
Confidence 345556789999999999999988888754 58999999999999999998876664 37788999987653 235789
Q ss_pred CEEEEcC
Q 012998 406 DKVLLDA 412 (451)
Q Consensus 406 D~VlvD~ 412 (451)
|+|++..
T Consensus 489 DvVVsn~ 495 (677)
T PRK06922 489 DTIVYSS 495 (677)
T ss_pred EEEEEch
Confidence 9999754
No 158
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.40 E-value=1e-06 Score=87.54 Aligned_cols=91 Identities=21% Similarity=0.316 Sum_probs=77.4
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC----
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---- 401 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~---- 401 (451)
..+|.+++|+.++|+.+|-||.|..|++.+++ |+|+|+|.++..++.+++.++.++ ++++++++++.++....
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~~l~~~l~~~~ 89 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFANFFEHLDELL 89 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHHHHHHHHHhcC
Confidence 45667889999999999999999999998875 999999999999999999988653 56999999998765422
Q ss_pred CCCcCEEEEcCCCCCccc
Q 012998 402 TVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg~G~ 419 (451)
..++|.|++|--+|+.-.
T Consensus 90 ~~~vDgIl~DLGvSS~Ql 107 (305)
T TIGR00006 90 VTKIDGILVDLGVSSPQL 107 (305)
T ss_pred CCcccEEEEeccCCHhhc
Confidence 247999999999987654
No 159
>PRK05785 hypothetical protein; Provisional
Probab=98.40 E-value=6.8e-07 Score=85.66 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=54.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
++.+|||+|||+|..+..++... .+.|+|+|+|++|++.+++.. ..+++|+..++ ..+++||.|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp-~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEALP-FRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhCC-CCCCCEEEEEe
Confidence 47899999999999999998875 379999999999999987631 24578888875 34689999997
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.40 E-value=1.1e-06 Score=85.72 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=68.5
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...++..++..++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. .. +++++++|+..++.
T Consensus 18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~-~v~v~~~D~~~~~~-- 89 (253)
T TIGR00755 18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YE-RLEVIEGDALKVDL-- 89 (253)
T ss_pred HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CC-cEEEEECchhcCCh--
Confidence 3445566777889999999999999999999874 4699999999999999988754 33 48899999988653
Q ss_pred CCCcC---EEEEcCCCC
Q 012998 402 TVKCD---KVLLDAPCS 415 (451)
Q Consensus 402 ~~~fD---~VlvD~PCS 415 (451)
..|| .|+.+.|-.
T Consensus 90 -~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 -PDFPKQLKVVSNLPYN 105 (253)
T ss_pred -hHcCCcceEEEcCChh
Confidence 2466 999999853
No 161
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=1.9e-06 Score=86.19 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...+...++..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++++..|+.++|+++.+|+...+ .
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--Y 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--C
Confidence 44555667778889999999999999999999864 589999997 7899999999999999888999999987532 1
Q ss_pred CCCcCEEEE
Q 012998 402 TVKCDKVLL 410 (451)
Q Consensus 402 ~~~fD~Vlv 410 (451)
..+|.|++
T Consensus 214 -~~~D~v~~ 221 (306)
T TIGR02716 214 -PEADAVLF 221 (306)
T ss_pred -CCCCEEEe
Confidence 23688875
No 162
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.30 E-value=3.1e-06 Score=79.77 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=64.9
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
...+...++.+|||+|||+|..+..++...+..+.++++|+++.++..++++.. ...++.++.+|+.+.+. ..++|
T Consensus 32 ~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~-~~~~~ 107 (223)
T TIGR01934 32 VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF-EDNSF 107 (223)
T ss_pred HHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC-CCCcE
Confidence 344455578999999999999999999887544799999999999999998876 22347888999987652 34679
Q ss_pred CEEEE
Q 012998 406 DKVLL 410 (451)
Q Consensus 406 D~Vlv 410 (451)
|+|++
T Consensus 108 D~i~~ 112 (223)
T TIGR01934 108 DAVTI 112 (223)
T ss_pred EEEEE
Confidence 99976
No 163
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=3e-06 Score=82.17 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=74.1
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
..-++..+++.+++.||++|+|.|..|..+++. ..+|+|+|+|+..+..+++.+. ... +++++++|+..+....
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~-n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYD-NLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--ccc-ceEEEeCchhcCcchh
Confidence 345667788899999999999999999999987 4689999999999999999876 233 4899999998875321
Q ss_pred CCCcCEEEEcCCCCCcc
Q 012998 402 TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg~G 418 (451)
-..++.|+.+-|..=+.
T Consensus 93 l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 93 LAQPYKVVANLPYNISS 109 (259)
T ss_pred hcCCCEEEEcCCCcccH
Confidence 11689999999986544
No 164
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=3.4e-06 Score=93.63 Aligned_cols=84 Identities=17% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcC-----------------------------------------CCceEEEEeCCHHH
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLS-----------------------------------------GQGLVYAIDINKGR 370 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~-----------------------------------------~~g~V~AvDi~~~r 370 (451)
+++..++|-+||+|.+.+..|.... ....|+|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5689999999999999988876421 12369999999999
Q ss_pred HHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEEcCCCC
Q 012998 371 LRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPCS 415 (451)
Q Consensus 371 l~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~VlvD~PCS 415 (451)
++.+++|++.+|+.+.|.+.++|+.++.... .+.||.|++|||.-
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 9999999999999888999999998875432 25799999999973
No 165
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.29 E-value=3.8e-06 Score=80.42 Aligned_cols=84 Identities=15% Similarity=0.083 Sum_probs=67.2
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
++...+.+.++.+|||+|||+|..+..++.. ...|+++|+++.+++.+++++...+.. +.++..|+..+.....+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGLK--IDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCCc--eEEEecCHHHhhhhcCC
Confidence 4444455667899999999999999988875 368999999999999999999887773 67888888776533347
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
+||+|++.-
T Consensus 114 ~fD~Ii~~~ 122 (233)
T PRK05134 114 QFDVVTCME 122 (233)
T ss_pred CccEEEEhh
Confidence 899998853
No 166
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.29 E-value=1.1e-06 Score=84.32 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=58.4
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-----eEEEEcCccccccccCCCC
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~-----~I~~~~~Da~~~~~~~~~~ 404 (451)
.+..|.+|||+|||.|-.|.+||.+ +..|+|+|+++.+++.+++..+.....+ ++.+.+.|+.... +.
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~ 158 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GK 158 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cc
Confidence 3445788999999999999999997 4799999999999999999955444433 2556666766543 46
Q ss_pred cCEEEE
Q 012998 405 CDKVLL 410 (451)
Q Consensus 405 fD~Vlv 410 (451)
||.|+|
T Consensus 159 fDaVvc 164 (282)
T KOG1270|consen 159 FDAVVC 164 (282)
T ss_pred cceeee
Confidence 999986
No 167
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=81.27 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=66.2
Q ss_pred cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 319 DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 319 d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
.++..|+++ +.+.+-.+|.|+|||||..|-.+++..+ ...|+|+|-|+.|++.+++.+ .| ++|..+|+..+.
T Consensus 17 RPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-----p~-~~f~~aDl~~w~ 88 (257)
T COG4106 17 RPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-----PD-ATFEEADLRTWK 88 (257)
T ss_pred CcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-----CC-CceecccHhhcC
Confidence 344445443 3455678999999999999999999986 589999999999999986543 33 688999999986
Q ss_pred ccCCCCcCEEEEcC
Q 012998 399 DNSTVKCDKVLLDA 412 (451)
Q Consensus 399 ~~~~~~fD~VlvD~ 412 (451)
+ ...+|+++.++
T Consensus 89 p--~~~~dllfaNA 100 (257)
T COG4106 89 P--EQPTDLLFANA 100 (257)
T ss_pred C--CCccchhhhhh
Confidence 4 35789998765
No 168
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.27 E-value=3.7e-05 Score=75.78 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHhhC-HHHHHHHHHHcCCCCCcEE------EEcCCCCCC---HHHHHHHHhcCCCCceeccCCCceEEEe
Q 012998 229 HPVWMVRRWTKYLG-QEEAIKLMVWNNSDPSFSL------RANSRKGVT---RADLVMQLNLLKVPHELSLHLDEFIRVK 298 (451)
Q Consensus 229 ~P~wl~~~~~~~~g-~e~~~~~~~~~~~~~~~~l------RvN~~k~~~---~~~~~~~L~~~g~~~~~~~~~~~~~~~~ 298 (451)
+|..+-+.+...+| -..+.+.++.+....+-.+ .+......+ .+++.+.|... .|+.+.|+.-..+.+.
T Consensus 17 l~~~~~~~~~~~~g~~~~w~~~l~~lp~~~~~~~~l~~~v~i~~~~~l~~~~~~~l~~~l~~l-~PWRKGPf~l~gi~ID 95 (315)
T PF08003_consen 17 LPAQLAAWLERRHGDLPRWQEALEQLPDLEPSSVDLSDSVTIGSASDLSAEQRQQLEQLLKAL-MPWRKGPFSLFGIHID 95 (315)
T ss_pred hHHHHHHHHHhccCCHHHHHHHHHHcCCCCCcEEecCCcEEeCCCCCCCHHHHHHHHHHHHhh-CCcccCCcccCCEeec
Confidence 56665555544555 3566667776654333322 222211122 33444455443 4677777654444443
Q ss_pred CCCcchhchhhhhcCceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012998 299 TGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (451)
Q Consensus 299 ~~~~~~~~~~~~~~G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~ 378 (451)
+.=.+.. -=..+...+..-.|.+|||+|||.|+.+..|+.. +...|+|+|.+..-+...+-.-
T Consensus 96 tEWrSd~---------------KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~ 158 (315)
T PF08003_consen 96 TEWRSDW---------------KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIK 158 (315)
T ss_pred ccccccc---------------hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHH
Confidence 3211100 1112333444556999999999999999999886 4568999999987765544433
Q ss_pred HHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCCcccccc
Q 012998 379 KLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSK 422 (451)
Q Consensus 379 ~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr 422 (451)
+-.|....+..+..-..+++. .+.||.||+ .|++-+
T Consensus 159 ~~lg~~~~~~~lplgvE~Lp~--~~~FDtVF~------MGVLYH 194 (315)
T PF08003_consen 159 HFLGQDPPVFELPLGVEDLPN--LGAFDTVFS------MGVLYH 194 (315)
T ss_pred HHhCCCccEEEcCcchhhccc--cCCcCEEEE------eeehhc
Confidence 444554434444344555554 478999996 888644
No 169
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.6e-06 Score=76.44 Aligned_cols=142 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred CHHHHHHHHhcCCC-----------CceeccCCCceEEEeCCCcchhchhhhhcCceeeecchh-hhhhhhhC--CCCCC
Q 012998 270 TRADLVMQLNLLKV-----------PHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESA-GLVVAVVD--PQPGQ 335 (451)
Q Consensus 270 ~~~~~~~~L~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~vQd~as-~l~~~~l~--~~~g~ 335 (451)
+-+++++.|++.++ .+.+..++|..++-. +...++.+..+.+.+--+.- ..+...|+ ++||.
T Consensus 9 ~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n----~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~ 84 (237)
T KOG1661|consen 9 DNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTN----PYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGA 84 (237)
T ss_pred chHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccC----CCCCCccccCCceEEcchHHHHHHHHHHHHhhccCc
Confidence 45666666666554 122334444444411 11223333333555543321 12335566 78999
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceE-EEEeCCHHHHHHHHHHHHHcCC---------CceEEEEcCccccccccCCCCc
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLV-YAIDINKGRLRILNETAKLHQV---------NSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V-~AvDi~~~rl~~l~~~~~~~g~---------~~~I~~~~~Da~~~~~~~~~~f 405 (451)
..||+|+|+|+.|..++.+++..|.+ ++||..++.++..++|+.+.-- ...+.++.+|.+.... ...+|
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~-e~a~Y 163 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA-EQAPY 163 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC-ccCCc
Confidence 99999999999999999888877765 9999999999999999987541 1347788999988654 34789
Q ss_pred CEEEEcCCCCC
Q 012998 406 DKVLLDAPCSG 416 (451)
Q Consensus 406 D~VlvD~PCSg 416 (451)
|+|.|-|--|.
T Consensus 164 DaIhvGAaa~~ 174 (237)
T KOG1661|consen 164 DAIHVGAAASE 174 (237)
T ss_pred ceEEEccCccc
Confidence 99999755443
No 170
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.25 E-value=2.9e-06 Score=83.49 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=57.8
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~--g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
.++.+|||+|||+|..+..++...+.. ..|+|+|+|+.+++.++++. .+ +.+..+|+.+++ ..+++||.|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~-~~~~~~d~~~lp-~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQ-VTFCVASSHRLP-FADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CC-CeEEEeecccCC-CcCCceeEEE
Confidence 456789999999999999999876543 37999999999999987653 33 678889988765 3457899998
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
.
T Consensus 157 ~ 157 (272)
T PRK11088 157 R 157 (272)
T ss_pred E
Confidence 5
No 171
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.24 E-value=2.5e-06 Score=81.18 Aligned_cols=91 Identities=19% Similarity=0.182 Sum_probs=67.9
Q ss_pred eecchhhhhhhhhCC---CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCc
Q 012998 317 VQDESAGLVVAVVDP---QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (451)
Q Consensus 317 vQd~as~l~~~~l~~---~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~D 393 (451)
+|......+...+.. ..+.+|||+|||+|..+..++.... ...++++|+++.++..+++++. . ++.++.+|
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~----~-~~~~~~~d 88 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS----E-NVQFICGD 88 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC----C-CCeEEecc
Confidence 455444444444442 3457999999999999999998854 5789999999999998887764 2 37788899
Q ss_pred cccccccCCCCcCEEEEcCCC
Q 012998 394 LRTFADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 394 a~~~~~~~~~~fD~VlvD~PC 414 (451)
+...+. ..++||+|+++-.+
T Consensus 89 ~~~~~~-~~~~fD~vi~~~~l 108 (240)
T TIGR02072 89 AEKLPL-EDSSFDLIVSNLAL 108 (240)
T ss_pred hhhCCC-CCCceeEEEEhhhh
Confidence 887652 35689999987543
No 172
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.24 E-value=6.3e-07 Score=84.30 Aligned_cols=89 Identities=17% Similarity=0.253 Sum_probs=69.6
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCccccccccC-CCC
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNS-TVK 404 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~-~I~~~~~Da~~~~~~~-~~~ 404 (451)
..+.++.|++|||.|.|-|+.++..++. +..+|+.+|.++.-|+.+.-|=-..++.. .|.++.+|+.++.+.+ +++
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 4556778999999999999999888775 33499999999999998876644333322 3789999998875544 678
Q ss_pred cCEEEEcCCCCCc
Q 012998 405 CDKVLLDAPCSGL 417 (451)
Q Consensus 405 fD~VlvD~PCSg~ 417 (451)
||+|+-|||.=+.
T Consensus 206 fDaIiHDPPRfS~ 218 (287)
T COG2521 206 FDAIIHDPPRFSL 218 (287)
T ss_pred cceEeeCCCccch
Confidence 9999999996544
No 173
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.23 E-value=4.3e-06 Score=83.62 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=54.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.++.+|||+|||+|.+|..+++.+.....++++|+|+.||+.+.+++....-.-.|..+++|+.+.
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP 127 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence 357899999999999999999987545789999999999999999987643222377789998764
No 174
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.23 E-value=5.5e-06 Score=78.59 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=62.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
..+.+|||+|||+|..+..++.. ...++++|+++.+++.+++++...+..+ +.+...|+..++....++||+|++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~D~i~~~ 119 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLK-IEYRCTSVEDLAEKGAKSFDVVTCM 119 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhcCCCCCccEEEeh
Confidence 34789999999999999988774 3579999999999999999999888753 7888899887654334689999875
No 175
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=5.5e-06 Score=75.27 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=69.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
...++|+|||+|..+..+++.+++....+|.|+|+..++...+.++.+++. +.+++.|...-.. .++.|+++.+||
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~--~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLR--NESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhc--cCCccEEEECCC
Confidence 568999999999999999999998889999999999999999999999986 6788888766543 389999999999
Q ss_pred CCC
Q 012998 414 CSG 416 (451)
Q Consensus 414 CSg 416 (451)
.--
T Consensus 120 YVp 122 (209)
T KOG3191|consen 120 YVP 122 (209)
T ss_pred cCc
Confidence 643
No 176
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.22 E-value=3.8e-06 Score=77.33 Aligned_cols=75 Identities=29% Similarity=0.345 Sum_probs=50.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc------cc---C
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DN---S 401 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~------~~---~ 401 (451)
+.++.+|||+||||||+|..+.+..+..++|+|+|+.+. ....+ +.++.+|..+.. .. .
T Consensus 21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeecccchhhHHHhhhhhcccc
Confidence 334589999999999999999998755789999999987 22333 667777765431 11 1
Q ss_pred CCCcCEEEEcC--CCCCc
Q 012998 402 TVKCDKVLLDA--PCSGL 417 (451)
Q Consensus 402 ~~~fD~VlvD~--PCSg~ 417 (451)
.++||.|++|. +|+|.
T Consensus 89 ~~~~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGD 106 (181)
T ss_dssp TCSESEEEE-------SS
T ss_pred ccCcceeccccccCCCCc
Confidence 25899999998 67664
No 177
>PLN02366 spermidine synthase
Probab=98.21 E-value=5.5e-06 Score=82.93 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEcCccccccccC-CCCcCE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNS-TVKCDK 407 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~-~~~I~~~~~Da~~~~~~~-~~~fD~ 407 (451)
....+||++|+|.|+....+++. ++..+|+.||+++..++.+++.+...+ + +.+++++.+|+..+.... .++||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 34679999999999999988875 444689999999999999999886542 3 237999999998775433 468999
Q ss_pred EEEcCCC
Q 012998 408 VLLDAPC 414 (451)
Q Consensus 408 VlvD~PC 414 (451)
|++|.+-
T Consensus 169 Ii~D~~d 175 (308)
T PLN02366 169 IIVDSSD 175 (308)
T ss_pred EEEcCCC
Confidence 9999764
No 178
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.20 E-value=5.7e-06 Score=78.56 Aligned_cols=73 Identities=10% Similarity=0.078 Sum_probs=56.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEcCccccc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLRTF 397 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~--------------~~~I~~~~~Da~~~ 397 (451)
.++.+|||+|||.|.-+..+|+. +-.|+|+|+|+..++.+... .|+ ...|+++++|+.++
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence 47789999999999999999985 46899999999999976332 222 12488899999887
Q ss_pred cccCCCCcCEEEE
Q 012998 398 ADNSTVKCDKVLL 410 (451)
Q Consensus 398 ~~~~~~~fD~Vlv 410 (451)
.....+.||.|+-
T Consensus 107 ~~~~~~~fD~i~D 119 (213)
T TIGR03840 107 TAADLGPVDAVYD 119 (213)
T ss_pred CcccCCCcCEEEe
Confidence 6432357888864
No 179
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.20 E-value=4.4e-06 Score=84.61 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.++.+|||+|||+|..+..+++..+ .+.|+++|+++.+++.++++.. ..+ +.++.+|+.+++ ...+.||+|++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~-i~~i~gD~e~lp-~~~~sFDvVIs~ 185 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKE-CKIIEGDAEDLP-FPTDYADRYVSA 185 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccC-CeEEeccHHhCC-CCCCceeEEEEc
Confidence 4678999999999999999988764 4789999999999999998764 233 678899998765 234689999874
No 180
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.19 E-value=7.8e-06 Score=77.91 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------------CceEEEEcCccc
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------------NSVIRTIHADLR 395 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~--------------~~~I~~~~~Da~ 395 (451)
.+.++.+|||+|||.|.-+.++|+. +..|+|+|+++..++.+.. +.|+ ...|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 4456789999999999999999985 4689999999999997642 2222 234888999998
Q ss_pred cccccCCCCcCEEE
Q 012998 396 TFADNSTVKCDKVL 409 (451)
Q Consensus 396 ~~~~~~~~~fD~Vl 409 (451)
.+.......||.|+
T Consensus 108 ~l~~~~~~~fd~v~ 121 (218)
T PRK13255 108 ALTAADLADVDAVY 121 (218)
T ss_pred CCCcccCCCeeEEE
Confidence 87543335788887
No 181
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.18 E-value=6.9e-06 Score=80.82 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=63.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCccccccccCCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~---~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.+||++|||.|+.+..++... +...|+++|+++..++.+++++...+. ..+++++.+|+..+.....++||+|++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 4599999999999888887653 346899999999999999998866431 235788889998765444578999999
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
|++
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 987
No 182
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.18 E-value=2.7e-06 Score=78.74 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
-|.+-.+++...|.-..-.++||+|||.|..|..||... .+++++|+++..++.+++++... ++ |.++++|...
T Consensus 27 E~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--~~-V~~~~~dvp~ 100 (201)
T PF05401_consen 27 ERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--PH-VEWIQADVPE 100 (201)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SS-EEEEES-TTT
T ss_pred HHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--CC-eEEEECcCCC
Confidence 343333344334554556789999999999999999873 68999999999999999999754 45 9999999977
Q ss_pred ccccCCCCcCEEEE
Q 012998 397 FADNSTVKCDKVLL 410 (451)
Q Consensus 397 ~~~~~~~~fD~Vlv 410 (451)
+. +.+.||.|++
T Consensus 101 ~~--P~~~FDLIV~ 112 (201)
T PF05401_consen 101 FW--PEGRFDLIVL 112 (201)
T ss_dssp -----SS-EEEEEE
T ss_pred CC--CCCCeeEEEE
Confidence 64 3579999995
No 183
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.17 E-value=5.5e-06 Score=87.93 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=66.7
Q ss_pred ecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 318 Qd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
|......+...+.+.++.+|||+|||+|..+..++.. .++|+|+|+++.+++.+++. .+...+++++++|+...
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSP 95 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEeccccc
Confidence 3333445556677777889999999999999999986 36899999999999876542 22223488999998642
Q ss_pred c-ccCCCCcCEEEEcCCC
Q 012998 398 A-DNSTVKCDKVLLDAPC 414 (451)
Q Consensus 398 ~-~~~~~~fD~VlvD~PC 414 (451)
. +...++||+|++..++
T Consensus 96 ~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLL 113 (475)
T ss_pred ccCCCCCCEEEEehhhhH
Confidence 1 2234689999987654
No 184
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.17 E-value=5.1e-06 Score=75.52 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=62.9
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
++|||+|||.|..-..+++.- =.+.++++|-++..++.++..+++.|++|.|++.+.|.... ....+.||+|+
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEe
Confidence 499999999999998888752 24679999999999999999999999999899999999875 34467888876
No 185
>PRK01581 speE spermidine synthase; Validated
Probab=98.15 E-value=6.4e-06 Score=83.47 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=61.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH--H---HHcCC-CceEEEEcCccccccccCCCCcCE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNET--A---KLHQV-NSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~--~---~~~g~-~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
..+||++|+|.|+.+..+.+. ++..+|++||+++.+++.+++. + .+.++ ..+++++.+|+..+.....+.||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 459999999999977666654 3457999999999999999962 1 12222 346999999999876555678999
Q ss_pred EEEcCC
Q 012998 408 VLLDAP 413 (451)
Q Consensus 408 VlvD~P 413 (451)
|++|.|
T Consensus 230 IIvDl~ 235 (374)
T PRK01581 230 IIIDFP 235 (374)
T ss_pred EEEcCC
Confidence 999976
No 186
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.15 E-value=4.5e-07 Score=74.81 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=46.6
Q ss_pred EeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEE
Q 012998 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 410 (451)
Q Consensus 338 LDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~Vlv 410 (451)
||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+ ...+..+..+..... .++||.|++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~ 72 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVA 72 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehh
Confidence 799999999999999987 46899999999999999999999888654 334444433332222 258999996
No 187
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=1.7e-05 Score=74.25 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=72.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cC-CCCcCEEEEc
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NS-TVKCDKVLLD 411 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~-~~~fD~VlvD 411 (451)
...+||+|||.|...+.+|..-+ ...++|+|+...++..+.+.+.+.+++| +.++++|+..+.. .. ++++|.|.+.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEe
Confidence 33899999999999999999865 5899999999999999999999999998 8999999988432 22 4789999998
Q ss_pred CCCCCccccccCCcccccC-CHhHHHHHH
Q 012998 412 APCSGLGVLSKRADLRWNR-RLEDMEELK 439 (451)
Q Consensus 412 ~PCSg~G~lrr~pd~~~~~-~~~~l~~l~ 439 (451)
=|+- +-|....++++ +++-+..++
T Consensus 96 FPDP----WpK~rH~krRl~~~~fl~~~~ 120 (195)
T PF02390_consen 96 FPDP----WPKKRHHKRRLVNPEFLELLA 120 (195)
T ss_dssp S---------SGGGGGGSTTSHHHHHHHH
T ss_pred CCCC----CcccchhhhhcCCchHHHHHH
Confidence 8875 33334444443 444454443
No 188
>PRK03612 spermidine synthase; Provisional
Probab=98.14 E-value=4.6e-06 Score=89.51 Aligned_cols=83 Identities=10% Similarity=0.139 Sum_probs=65.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HHc---CCC-ceEEEEcCccccccccCCCCc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLH---QVN-SVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~--~~~---g~~-~~I~~~~~Da~~~~~~~~~~f 405 (451)
.++.+|||+|||.|..+..+++. ++..+|+++|+|+++++.++++. ... .++ .+++++.+|++.+.....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999888864 32369999999999999999943 222 122 368999999998765445789
Q ss_pred CEEEEcCCCC
Q 012998 406 DKVLLDAPCS 415 (451)
Q Consensus 406 D~VlvD~PCS 415 (451)
|+|++|+|..
T Consensus 375 DvIi~D~~~~ 384 (521)
T PRK03612 375 DVIIVDLPDP 384 (521)
T ss_pred CEEEEeCCCC
Confidence 9999998753
No 189
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.11 E-value=1.1e-05 Score=77.62 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=74.6
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
++...+++|++.||++|-|||..|..|.+. +.+|+|+|+++.++..+.+..+-....+..+++++|+...+. ..
T Consensus 50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~---P~ 123 (315)
T KOG0820|consen 50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL---PR 123 (315)
T ss_pred HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---cc
Confidence 345567899999999999999999999887 578999999999999999999877777889999999876542 35
Q ss_pred cCEEEEcCCC--CCccc
Q 012998 405 CDKVLLDAPC--SGLGV 419 (451)
Q Consensus 405 fD~VlvD~PC--Sg~G~ 419 (451)
||.++.+.|. |+-++
T Consensus 124 fd~cVsNlPyqISSp~v 140 (315)
T KOG0820|consen 124 FDGCVSNLPYQISSPLV 140 (315)
T ss_pred cceeeccCCccccCHHH
Confidence 9999998884 44444
No 190
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.06 E-value=3.2e-05 Score=72.98 Aligned_cols=84 Identities=23% Similarity=0.286 Sum_probs=64.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--CCCcCE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 407 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--~~~fD~ 407 (451)
.+++|.+||-+||++|..-.|++..++..|.|+|||.++...+.+-..+++-. | |..+-+|++...... -+.+|+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~--N-IiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP--N-IIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST--T-EEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC--c-eeeeeccCCChHHhhcccccccE
Confidence 46799999999999999999999999989999999999999888887777643 5 778889998765432 358999
Q ss_pred EEEcCCCCC
Q 012998 408 VLLDAPCSG 416 (451)
Q Consensus 408 VlvD~PCSg 416 (451)
|++|+.-..
T Consensus 147 I~~DVaQp~ 155 (229)
T PF01269_consen 147 IFQDVAQPD 155 (229)
T ss_dssp EEEE-SSTT
T ss_pred EEecCCChH
Confidence 999987543
No 191
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.06 E-value=5.6e-06 Score=81.20 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=57.5
Q ss_pred CCCCeEEeecCCCch----HHHHHHHHcCC----CceEEEEeCCHHHHHHHHHHHHH----c------------------
Q 012998 332 QPGQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNETAKL----H------------------ 381 (451)
Q Consensus 332 ~~g~~VLDlcagpG~----kT~~la~~~~~----~g~V~AvDi~~~rl~~l~~~~~~----~------------------ 381 (451)
.++.+|||+|||+|. .++.+++..+. ..+|+|+|+|+.+++.+++.+-. .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 346799999999996 55566665442 46899999999999999986410 0
Q ss_pred ----CCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 382 ----QVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 382 ----g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
++.+.|++.++|+.+.+. ..++||+|+|
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~c 209 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP-PLGDFDLIFC 209 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC-ccCCCCEEEe
Confidence 122358899999987643 3578999995
No 192
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.04 E-value=1.1e-05 Score=74.47 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=54.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-ccCCCCcCEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVKCDKVL 409 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-~~~~~~fD~Vl 409 (451)
+.||.+|||+|||.|..-.++.+. .+...+++|+++..+..+.+ .|+ .++++|+..-. ...+.+||.|+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rGv----~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RGV----SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cCC----CEEECCHHHhHhhCCCCCccEEe
Confidence 457999999999999988888775 35789999999998876543 354 46889986543 34478999998
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
+
T Consensus 81 l 81 (193)
T PF07021_consen 81 L 81 (193)
T ss_pred h
Confidence 6
No 193
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.03 E-value=1.5e-05 Score=74.37 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc-ccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~-~~~~~~~~fD~Vlv 410 (451)
.++.+|||+|||+|..+..++... ...++++|+++.+++.+++ .+ +.++++|+.. ++...+++||.|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~----~~----~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA----RG----VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH----cC----CeEEEEEhhhcccccCCCCcCEEEE
Confidence 467899999999999998887653 3578999999999988754 12 4567788765 32233568999998
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
...
T Consensus 82 ~~~ 84 (194)
T TIGR02081 82 SQT 84 (194)
T ss_pred hhH
Confidence 643
No 194
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=9.6e-06 Score=75.85 Aligned_cols=77 Identities=27% Similarity=0.312 Sum_probs=59.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc------cC-CC
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NS-TV 403 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~------~~-~~ 403 (451)
+.+|+.|+|+||+|||++..++..++..+.|+|+|+.+-.. +.+ |.++++|++.-.. .. ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeeccCccHHHHHHHHcCCC
Confidence 35799999999999999999999999888999999987543 334 7889999876421 11 23
Q ss_pred CcCEEEEcCCCCCccc
Q 012998 404 KCDKVLLDAPCSGLGV 419 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G~ 419 (451)
++|+|++|+----+|+
T Consensus 111 ~~DvV~sD~ap~~~g~ 126 (205)
T COG0293 111 PVDVVLSDMAPNTSGN 126 (205)
T ss_pred CcceEEecCCCCcCCC
Confidence 5799999955444454
No 195
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.97 E-value=1.7e-05 Score=79.49 Aligned_cols=78 Identities=24% Similarity=0.230 Sum_probs=58.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.+|++|||+||+|||+|-.+++. +++|+|||..+ +...+.. +.+|+...+|...+.+. .+.+|.|+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~~---~~~V~h~~~d~fr~~p~-~~~vDwvVc 276 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLMD---TGQVEHLRADGFKFRPP-RKNVDWLVC 276 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhhC---CCCEEEEeccCcccCCC-CCCCCEEEE
Confidence 368999999999999999999886 46999999554 2222222 23588888888766532 568999999
Q ss_pred cCCCCCcccc
Q 012998 411 DAPCSGLGVL 420 (451)
Q Consensus 411 D~PCSg~G~l 420 (451)
|.-|...-+.
T Consensus 277 Dmve~P~rva 286 (357)
T PRK11760 277 DMVEKPARVA 286 (357)
T ss_pred ecccCHHHHH
Confidence 9999876653
No 196
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.97 E-value=1.6e-05 Score=74.38 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=65.0
Q ss_pred ceeeecchhhhhhhhhCCCC--CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Q 012998 314 LCAVQDESAGLVVAVVDPQP--GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (451)
Q Consensus 314 ~~~vQd~as~l~~~~l~~~~--g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~ 391 (451)
...+|-+-+.-+.++|+..+ ..-|||+|||+|-.+..+.+. +-..+++|+|+.||+.+.+. .+. . .++.
T Consensus 29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e--g--dlil 99 (270)
T KOG1541|consen 29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE--G--DLIL 99 (270)
T ss_pred eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh--c--Ceee
Confidence 46788888888888888766 568999999999888766542 35689999999999999862 222 1 2456
Q ss_pred CccccccccCCCCcCEEE
Q 012998 392 ADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 392 ~Da~~~~~~~~~~fD~Vl 409 (451)
+|.-.-.++.++.||.|+
T Consensus 100 ~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 100 CDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred eecCCCCCCCCCccceEE
Confidence 676554455578999776
No 197
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.96 E-value=5.7e-06 Score=82.28 Aligned_cols=92 Identities=25% Similarity=0.412 Sum_probs=67.2
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc----
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---- 400 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---- 400 (451)
++..|.++++..++|+.-|.||.|..+.+.+++ ++|+|+|.++.+++.++++++.. .+++.++++++.++...
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~ 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKEL 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHT
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHc
Confidence 356677899999999999999999999999887 99999999999999999988866 45699999998876532
Q ss_pred -CCCCcCEEEEcCCCCCccc
Q 012998 401 -STVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 401 -~~~~fD~VlvD~PCSg~G~ 419 (451)
....+|.||+|--+|+.-+
T Consensus 89 ~~~~~~dgiL~DLGvSS~Ql 108 (310)
T PF01795_consen 89 NGINKVDGILFDLGVSSMQL 108 (310)
T ss_dssp TTTS-EEEEEEE-S--HHHH
T ss_pred cCCCccCEEEEccccCHHHh
Confidence 2357999999999987653
No 198
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.91 E-value=1.4e-05 Score=73.02 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=61.9
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.+.+.|+|+|+|-.+...|.. ..+|+|++.++.+...+.+|++-.|..| +.++.+|++.+.- +..|+|+|.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHHH
Confidence 379999999999999988876 4689999999999999999999999876 9999999998752 457888764
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.84 E-value=2.4e-05 Score=75.02 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=36.6
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHH-HHHH
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI-LNET 377 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~-l~~~ 377 (451)
.+|..|||+|||||++|..+++. +.++|+|+|+++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 36789999999999999999986 45799999999987764 4444
No 200
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.82 E-value=5e-05 Score=80.89 Aligned_cols=108 Identities=28% Similarity=0.377 Sum_probs=85.3
Q ss_pred CceeeecchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHHcCCCceEEE
Q 012998 313 GLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNSVIRT 389 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~---~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~ 389 (451)
|.|+--..-+.+++.++.+.+..+|.|-|||+||.-+..+..++. ...+++.|+++.....++-|+--.|+...+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 554444456778899999999999999999999999988888853 37899999999999999999999998733456
Q ss_pred EcCcccccccc----CCCCcCEEEEcCCCCCcccc
Q 012998 390 IHADLRTFADN----STVKCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 390 ~~~Da~~~~~~----~~~~fD~VlvD~PCSg~G~l 420 (451)
.++|...-+.. ..+.||.|+.+||-|+.|..
T Consensus 246 ~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~ 280 (489)
T COG0286 246 RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWG 280 (489)
T ss_pred cccccccCCcccccCCccceeEEEeCCCCCccccc
Confidence 66665443322 23679999999999866643
No 201
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.82 E-value=4.3e-05 Score=73.04 Aligned_cols=91 Identities=22% Similarity=0.250 Sum_probs=61.5
Q ss_pred hhhhhhhhCCCCCC--eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC--------CceEEEEc
Q 012998 322 AGLVVAVVDPQPGQ--SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV--------NSVIRTIH 391 (451)
Q Consensus 322 s~l~~~~l~~~~g~--~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~--------~~~I~~~~ 391 (451)
...++.++.+++|. +|||+.||-|.-++.+|.. +++|+++|.|+-....++..+++..- -.+|++++
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 35667778777774 9999999999999999875 37899999999998888877766421 13799999
Q ss_pred CccccccccCCCCcCEEEEcCCCC
Q 012998 392 ADLRTFADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 392 ~Da~~~~~~~~~~fD~VlvD~PCS 415 (451)
+|+.++......+||+|++||--.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCC
Confidence 999987654467999999999643
No 202
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.81 E-value=3.7e-05 Score=80.83 Aligned_cols=77 Identities=19% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCeEEeecCCCchHHHHHHHH---cCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASC---LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~---~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+..|||+|||+|-.....+.. .+...+|+|||.|+.....+++.++..|..++|+++++|++++.. ++++|+|+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 568999999999997665544 234569999999999999999988999998889999999999863 368999997
Q ss_pred cC
Q 012998 411 DA 412 (451)
Q Consensus 411 D~ 412 (451)
..
T Consensus 265 El 266 (448)
T PF05185_consen 265 EL 266 (448)
T ss_dssp --
T ss_pred ec
Confidence 64
No 203
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.81 E-value=7.5e-05 Score=71.49 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=69.3
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--CCCcCEEEEcC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVLLDA 412 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--~~~fD~VlvD~ 412 (451)
-.+||||||.|...+++|..-+ ..-.+|||+....+..+.+.+.+.|++| +.+++.|+..+.... +++.|.|.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4899999999999999999854 5789999999999999999999999986 999999998876543 34899999988
Q ss_pred CCC
Q 012998 413 PCS 415 (451)
Q Consensus 413 PCS 415 (451)
|+-
T Consensus 128 PDP 130 (227)
T COG0220 128 PDP 130 (227)
T ss_pred CCC
Confidence 863
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.79 E-value=0.00013 Score=67.60 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=63.0
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCS 415 (451)
+|+|+|+|.|-=++.+|-.. +...++.+|.+.+++..+++-...+|++| ++++++.+.+ ......||.|+.=|-++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~--~~~~~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE--PEYRESFDVVTARAVAP 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH--TTTTT-EEEEEEESSSS
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc--cccCCCccEEEeehhcC
Confidence 89999999999999888776 46899999999999999999999999997 9999999988 22357899999876554
No 205
>PLN02823 spermine synthase
Probab=97.79 E-value=8.9e-05 Score=75.11 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=64.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEcCccccccccCCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~-~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..+||.+|+|.|+.+..+.... +..+|++||+++..++.+++.+...+ + +.+++++.+|+..+.....++||+|++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4689999999999988887742 34689999999999999999986432 1 346999999999887555678999999
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
|.+
T Consensus 183 D~~ 185 (336)
T PLN02823 183 DLA 185 (336)
T ss_pred cCC
Confidence 963
No 206
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.78 E-value=0.0001 Score=72.34 Aligned_cols=92 Identities=24% Similarity=0.349 Sum_probs=79.5
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC---
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--- 401 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--- 401 (451)
++..|.+.|+...+|+.-|-||.|-.+.+.++..|+++|+|.++..++.+++.+..++ +++++++..+.++....
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~ 92 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL 92 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc
Confidence 4567889999999999999999999999999888999999999999999999999877 46999999887764322
Q ss_pred -CCCcCEEEEcCCCCCcc
Q 012998 402 -TVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 402 -~~~fD~VlvD~PCSg~G 418 (451)
.+++|.||+|---|+.-
T Consensus 93 ~i~~vDGiL~DLGVSS~Q 110 (314)
T COG0275 93 GIGKVDGILLDLGVSSPQ 110 (314)
T ss_pred CCCceeEEEEeccCCccc
Confidence 35899999998777654
No 207
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.78 E-value=8.6e-05 Score=74.22 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=63.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
-.+..|||+|||+|-.++..|.. +..+|+|||-+.-. +.+.+.+..+|+.++|+++.+.+.++. .+.++.|+|+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvS 133 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVS 133 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEee
Confidence 35889999999999999988886 46799999977665 999999999999999999999988872 23478898875
No 208
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.77 E-value=4.8e-05 Score=75.07 Aligned_cols=79 Identities=22% Similarity=0.317 Sum_probs=61.7
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEEcCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~VlvD~PC 414 (451)
+|+|++||.||.+.-+... +-..|+|+|+++..++..+.|.... ++++|..++.... ...+|+|+.+|||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCCCC
Confidence 6899999999998877654 2456899999999999998887421 4567777765432 3579999999999
Q ss_pred CCccccccC
Q 012998 415 SGLGVLSKR 423 (451)
Q Consensus 415 Sg~G~lrr~ 423 (451)
.+.-...++
T Consensus 73 q~fS~ag~~ 81 (275)
T cd00315 73 QPFSIAGKR 81 (275)
T ss_pred hhhhHHhhc
Confidence 988776654
No 209
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.77 E-value=1.7e-05 Score=78.63 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=73.1
Q ss_pred chhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHH-------HHHHHHHHcCCCc-eEEEEc
Q 012998 320 ESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR-------ILNETAKLHQVNS-VIRTIH 391 (451)
Q Consensus 320 ~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~-------~l~~~~~~~g~~~-~I~~~~ 391 (451)
+-|.+.+....+.||+.|+|=..|+|+.-...|.- ++.|++.||+-.++. -.+.|++.+|... -+.++.
T Consensus 195 eLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~ 271 (421)
T KOG2671|consen 195 ELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271 (421)
T ss_pred hHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence 34556666677899999999999999987766665 589999999998887 4678999999643 345678
Q ss_pred CccccccccCCCCcCEEEEcCCC
Q 012998 392 ADLRTFADNSTVKCDKVLLDAPC 414 (451)
Q Consensus 392 ~Da~~~~~~~~~~fD~VlvD~PC 414 (451)
+|..+.+-.....||.|+||||.
T Consensus 272 ~D~sn~~~rsn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 272 ADFSNPPLRSNLKFDAIVCDPPY 294 (421)
T ss_pred ecccCcchhhcceeeEEEeCCCc
Confidence 89887654335689999999996
No 210
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.77 E-value=9.6e-05 Score=70.62 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-ccCCCCcCEEEEc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-DNSTVKCDKVLLD 411 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-~~~~~~fD~VlvD 411 (451)
.|.+||=+| =+..|...+.+.+...+|+.+|+++..++.+++.+++.|++ |++++.|.++.. +...++||+++.|
T Consensus 44 ~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f~TD 119 (243)
T PF01861_consen 44 EGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVFFTD 119 (243)
T ss_dssp TT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEEEE-
T ss_pred cCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEEEeC
Confidence 478887555 66776666666666789999999999999999999999997 899999998753 3446899999999
Q ss_pred CCCCCccc----------cccCCc-c-cccCCHh--HHHHHHHHHHHHHHH
Q 012998 412 APCSGLGV----------LSKRAD-L-RWNRRLE--DMEELKILQDELLDA 448 (451)
Q Consensus 412 ~PCSg~G~----------lrr~pd-~-~~~~~~~--~l~~l~~lQ~~lL~~ 448 (451)
||.+-.|+ ++ .+. . -...+.. ...+...+|+.|++.
T Consensus 120 PPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~ 169 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIEALK-GEGCAGYFGFTHKEASPDKWLEVQRFLLEM 169 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB--STT-EEEEEE-TTT--HHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCCceEEEEEecCcCcHHHHHHHHHHHHHC
Confidence 99998884 32 232 2 1222222 377888999999854
No 211
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.74 E-value=7.9e-05 Score=80.18 Aligned_cols=85 Identities=18% Similarity=0.189 Sum_probs=63.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-------CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc----cccCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-------QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF----ADNST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-------~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~----~~~~~ 402 (451)
+.+|||.|||+|++.+.++..+.. .-.++++|+++..+..++.++..++.-+ +.+.+.|.... .....
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~-~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLE-INVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCC-ceeeeccccccccccccccc
Confidence 458999999999999999887642 2468999999999999999998877222 44555554321 11123
Q ss_pred CCcCEEEEcCCCCCccc
Q 012998 403 VKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~G~ 419 (451)
+.||+|+.+||....-.
T Consensus 111 ~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKP 127 (524)
T ss_pred CcccEEEeCCCccccCc
Confidence 57999999999887543
No 212
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.72 E-value=8.2e-05 Score=66.14 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=39.7
Q ss_pred hhhhhhhhC-CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHH
Q 012998 322 AGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373 (451)
Q Consensus 322 s~l~~~~l~-~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~ 373 (451)
+.++..+.. ..++.+|||+|||.|..+..++.. ..+|+++|+++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence 344555554 567899999999999999989665 3499999999999988
No 213
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.71 E-value=0.00013 Score=71.52 Aligned_cols=87 Identities=18% Similarity=0.202 Sum_probs=70.2
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS 401 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~ 401 (451)
...++..+++.+++.|||+|+|+|..|..++... ..|+++|+++..++.+++... ... +++++++|+..+....
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~-~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNP-NVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCS-SEEEEES-TTTSCGGG
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcc-cceeeecchhccccHH
Confidence 4456677888899999999999999999999873 789999999999999998776 233 4899999998875432
Q ss_pred --CCCcCEEEEcCCC
Q 012998 402 --TVKCDKVLLDAPC 414 (451)
Q Consensus 402 --~~~fD~VlvD~PC 414 (451)
......|+.+.|.
T Consensus 93 ~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY 107 (262)
T ss_dssp HCSSSEEEEEEEETG
T ss_pred hhcCCceEEEEEecc
Confidence 2345688889886
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.67 E-value=0.00019 Score=68.00 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=69.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
+.+|+|+|+|+|-=++.+|- +.+...|+-+|...+++..+++-.+.+|++| ++++++.++++...... ||+|.+=|-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~-~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQ-YDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhccccccc-CcEEEeehc
Confidence 67999999999999999984 4456779999999999999999999999997 99999999988643222 999998776
Q ss_pred CCCcc
Q 012998 414 CSGLG 418 (451)
Q Consensus 414 CSg~G 418 (451)
++-.-
T Consensus 145 a~L~~ 149 (215)
T COG0357 145 ASLNV 149 (215)
T ss_pred cchHH
Confidence 65543
No 215
>PRK04148 hypothetical protein; Provisional
Probab=97.65 E-value=0.00016 Score=63.30 Aligned_cols=73 Identities=12% Similarity=-0.027 Sum_probs=52.0
Q ss_pred hhhCCCCCCeEEeecCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 327 AVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~-kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
..+....+.+|||+|||.|. .+..+++. +..|+|+|+++.+++.++++ + +.++.+|..+.....-+.+
T Consensus 10 ~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~~~y~~a 78 (134)
T PRK04148 10 ENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNLEIYKNA 78 (134)
T ss_pred HhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCHHHHhcC
Confidence 33444456899999999996 66666653 46999999999988877654 3 4567889877544333567
Q ss_pred CEEEE
Q 012998 406 DKVLL 410 (451)
Q Consensus 406 D~Vlv 410 (451)
|.|..
T Consensus 79 ~liys 83 (134)
T PRK04148 79 KLIYS 83 (134)
T ss_pred CEEEE
Confidence 77763
No 216
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00022 Score=66.07 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=66.8
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDK 407 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~ 407 (451)
.+.+|++||=+||++|....|++...+ .|.|+|||.++.....+-..+++- +| |..+.+|++..... .-+..|+
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--~N-i~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--PN-IIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--CC-ceeeecccCCcHHhhhhcccccE
Confidence 367899999999999999999999988 799999999999998888888763 24 77888999875432 2357999
Q ss_pred EEEcCC
Q 012998 408 VLLDAP 413 (451)
Q Consensus 408 VlvD~P 413 (451)
|+.|.-
T Consensus 149 iy~DVA 154 (231)
T COG1889 149 IYQDVA 154 (231)
T ss_pred EEEecC
Confidence 999974
No 217
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.57 E-value=0.00024 Score=65.27 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=50.5
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--CCceEEEEcCcccccc--c-cCCCCc
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFA--D-NSTVKC 405 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~~~~I~~~~~Da~~~~--~-~~~~~f 405 (451)
...+.+||++|||+|--++.++.+. +...|++.|.++ .+..++.|++.++ ..+.+.+...|..+-. . ....+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 3468899999999999888888774 457999999999 9999999999987 5556777776653311 1 123579
Q ss_pred CEEEE
Q 012998 406 DKVLL 410 (451)
Q Consensus 406 D~Vlv 410 (451)
|+|+.
T Consensus 121 D~Ila 125 (173)
T PF10294_consen 121 DVILA 125 (173)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99884
No 218
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.57 E-value=0.00028 Score=67.52 Aligned_cols=76 Identities=14% Similarity=0.015 Sum_probs=57.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH------------HHcCCCceEEEEcCcccccc
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA------------KLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~------------~~~g~~~~I~~~~~Da~~~~ 398 (451)
+.++.+||+.|||.|.-..++|+. +-.|+|+|+|+..++.+.+.. +...- ..|+++++|+.++.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~-~~i~~~~gD~f~l~ 116 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKG-DDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceecc-CceEEEEccCcCCC
Confidence 346789999999999999999986 457999999999999875521 01111 24899999999885
Q ss_pred c--cCCCCcCEEEE
Q 012998 399 D--NSTVKCDKVLL 410 (451)
Q Consensus 399 ~--~~~~~fD~Vlv 410 (451)
. ...+.||.|+-
T Consensus 117 ~~~~~~~~fD~VyD 130 (226)
T PRK13256 117 KIANNLPVFDIWYD 130 (226)
T ss_pred ccccccCCcCeeee
Confidence 3 12357898763
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.54 E-value=1.5e-05 Score=66.69 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=30.5
Q ss_pred EeecCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEEcCCC
Q 012998 338 VDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (451)
Q Consensus 338 LDlcagpG~kT~~la~~~~~~g--~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~VlvD~PC 414 (451)
|++|++.|..|+.+++.+.+.+ +++++|..+. .+..++.+++.++.++++++.+|..+..+.. .++||.|++|.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999999999887665 8999999997 5555666666788777999999987654333 3789999999987
Q ss_pred CCccc
Q 012998 415 SGLGV 419 (451)
Q Consensus 415 Sg~G~ 419 (451)
+..++
T Consensus 80 ~~~~~ 84 (106)
T PF13578_consen 80 SYEAV 84 (106)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 76555
No 220
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.53 E-value=0.00032 Score=69.44 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=65.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
.|..|||+|||+|..++..|+. +..+|+|||.+ +|.+.+++.++.+.+.++|+++.+..+++. .+++.|+|+..|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPEk~DviISEP 251 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPEKVDVIISEP 251 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--CchhccEEEecc
Confidence 4789999999999999988876 56799999966 678889999999999999999999988764 458899999877
Q ss_pred C
Q 012998 413 P 413 (451)
Q Consensus 413 P 413 (451)
-
T Consensus 252 M 252 (517)
T KOG1500|consen 252 M 252 (517)
T ss_pred c
Confidence 3
No 221
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.52 E-value=0.0003 Score=61.76 Aligned_cols=58 Identities=26% Similarity=0.369 Sum_probs=50.3
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~ 395 (451)
.|||+||+.|..+..++... +.++|+++|.++...+.++++++.+++.+ +.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence 48999999999999998874 45699999999999999999999999876 777776654
No 222
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.49 E-value=0.00021 Score=66.52 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=67.9
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCE
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
++.......||++|||||..--..- +.+..+|+++|.++.|-+.+.+.++.....+...++++|+++++...++++|.
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~--~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYP--WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred HhcccCccceEEecccCCCCccccc--CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeee
Confidence 3444444578999999997543332 12568999999999999999999988866653339999999998777899999
Q ss_pred EEEc-CCCCCcc
Q 012998 408 VLLD-APCSGLG 418 (451)
Q Consensus 408 VlvD-~PCSg~G 418 (451)
|++- +=||-.-
T Consensus 149 VV~TlvLCSve~ 160 (252)
T KOG4300|consen 149 VVCTLVLCSVED 160 (252)
T ss_pred EEEEEEEeccCC
Confidence 9886 4477654
No 223
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00066 Score=62.20 Aligned_cols=76 Identities=24% Similarity=0.359 Sum_probs=55.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC-cccccc-------ccCCC
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHA-DLRTFA-------DNSTV 403 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~-Da~~~~-------~~~~~ 403 (451)
.|+++|||+||+||.++...-+..++.|.|.+||+-.- ...++ ++++.+ |+++.. ..+..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~G-a~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEG-ATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCC-cccccccccCCHHHHHHHHHhCCCC
Confidence 46999999999999999999999989999999997531 22333 444555 665421 12346
Q ss_pred CcCEEEEcCCCCCccc
Q 012998 404 KCDKVLLDAPCSGLGV 419 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G~ 419 (451)
..|+||.|.---.+|+
T Consensus 136 ~VdvVlSDMapnaTGv 151 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGV 151 (232)
T ss_pred cccEEEeccCCCCcCc
Confidence 7899999966566776
No 224
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.46 E-value=0.00032 Score=72.21 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCccccccccCCCCcCEEEEcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~-~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
+-+|||.-||+|--++..+..+++...|+++|+|+..++.+++|++.+|+.+ ++++.+.|+..+.......||+|=+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999999999999987777899999999999999999999999998 789999999887633457899999998
Q ss_pred CC
Q 012998 413 PC 414 (451)
Q Consensus 413 PC 414 (451)
==
T Consensus 130 fG 131 (377)
T PF02005_consen 130 FG 131 (377)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 225
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.40 E-value=0.0012 Score=70.75 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=69.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~Vlv 410 (451)
..+..+||+|||.|..++++|...+ ...++|+|++...+..+.+.+.+.|+.| +.+++.|+..+.... ++++|.|++
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE
Confidence 3467899999999999999999854 5789999999999999999999999987 788888886554333 467999999
Q ss_pred cCCCC
Q 012998 411 DAPCS 415 (451)
Q Consensus 411 D~PCS 415 (451)
.=|+-
T Consensus 424 ~FPDP 428 (506)
T PRK01544 424 LFPDP 428 (506)
T ss_pred ECCCC
Confidence 88864
No 226
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.38 E-value=0.00033 Score=66.79 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=63.0
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH-c-----C-C----CceEEEEcCccccc
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL-H-----Q-V----NSVIRTIHADLRTF 397 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~-~-----g-~----~~~I~~~~~Da~~~ 397 (451)
+...++.+||+.|||.|.-...+|+. +-.|+|+|+++..++.+.+.... . + . ...|+++++|+..+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34677889999999999999999986 46899999999999987432211 1 0 0 12488999999998
Q ss_pred cccCCCCcCEEEEcCCCCCccccccCCccc
Q 012998 398 ADNSTVKCDKVLLDAPCSGLGVLSKRADLR 427 (451)
Q Consensus 398 ~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~ 427 (451)
.....++||.|+= |+.+-.| +|+.|
T Consensus 110 ~~~~~g~fD~iyD---r~~l~Al--pp~~R 134 (218)
T PF05724_consen 110 PPEDVGKFDLIYD---RTFLCAL--PPEMR 134 (218)
T ss_dssp GGSCHHSEEEEEE---CSSTTTS---GGGH
T ss_pred ChhhcCCceEEEE---ecccccC--CHHHH
Confidence 7654468999873 4444443 45544
No 227
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.36 E-value=0.00052 Score=66.67 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=63.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEcCccccccccCCC-CcCEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV---NSVIRTIHADLRTFADNSTV-KCDKV 408 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~---~~~I~~~~~Da~~~~~~~~~-~fD~V 408 (451)
...+||=+|.|.|+.+..+... .+...|++||+++..++.+++.+..... +.+++++.+|+..+.....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4679999999999998888765 3346899999999999999998876433 24689999999998766656 89999
Q ss_pred EEcCCC
Q 012998 409 LLDAPC 414 (451)
Q Consensus 409 lvD~PC 414 (451)
++|.+=
T Consensus 155 i~D~~d 160 (246)
T PF01564_consen 155 IVDLTD 160 (246)
T ss_dssp EEESSS
T ss_pred EEeCCC
Confidence 999874
No 228
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.30 E-value=0.00076 Score=66.93 Aligned_cols=83 Identities=13% Similarity=0.046 Sum_probs=52.2
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEcCccc-cc-c--ccCCCCcCEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLR-TF-A--DNSTVKCDKV 408 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~-g~~~~I~~~~~Da~-~~-~--~~~~~~fD~V 408 (451)
.-++||+|+|.-.+=-.|+..+. +-+.+|.|+++..++.+++|++++ ++.++|+++...-. .+ . ....+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999999887655655554 479999999999999999999999 99988988755321 11 1 1124689999
Q ss_pred EEcCCCCCc
Q 012998 409 LLDAPCSGL 417 (451)
Q Consensus 409 lvD~PCSg~ 417 (451)
+|+||-=.+
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999995443
No 229
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.29 E-value=0.00092 Score=59.16 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=52.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHHcC--CCceEEEEcCccc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLR 395 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~---~~~g~V~AvDi~~~rl~~l~~~~~~~g--~~~~I~~~~~Da~ 395 (451)
.+...|+|+|||-|+.+..++.++ ...-.|+++|.++..++.+.+..++.+ ....+.+..++..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIA 92 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchh
Confidence 678899999999999999999944 245799999999999999999999988 5334556555543
No 230
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.001 Score=65.80 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=72.6
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--C-CceEEEEcCcccccc
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--V-NSVIRTIHADLRTFA 398 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~-~~~I~~~~~Da~~~~ 398 (451)
...+.....++| .+||-+|-|.|+.+-.+..... --+++.||+++..++.+++.+.... . +.+++++..|+..+.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 334445556666 6999999999999999988743 5799999999999999999987654 2 257899999999987
Q ss_pred ccCCCCcCEEEEcC
Q 012998 399 DNSTVKCDKVLLDA 412 (451)
Q Consensus 399 ~~~~~~fD~VlvD~ 412 (451)
.....+||+|++|.
T Consensus 144 ~~~~~~fDvIi~D~ 157 (282)
T COG0421 144 RDCEEKFDVIIVDS 157 (282)
T ss_pred HhCCCcCCEEEEcC
Confidence 76666899999994
No 231
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.25 E-value=0.0012 Score=59.55 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc----c
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----D 399 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~----~ 399 (451)
..+..+++..|--||++|.|+|-+|-.+.+.......++++|.|++-...+.+... + +.++++|+..+. .
T Consensus 39 ~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~-~~ii~gda~~l~~~l~e 112 (194)
T COG3963 39 KMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----G-VNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----C-ccccccchhhHHHHHhh
Confidence 44455678889999999999999999999987777899999999999998877543 2 557889987764 2
Q ss_pred cCCCCcCEEEEcCCCCCcc
Q 012998 400 NSTVKCDKVLLDAPCSGLG 418 (451)
Q Consensus 400 ~~~~~fD~VlvD~PCSg~G 418 (451)
.....||.|++-.|--..-
T Consensus 113 ~~gq~~D~viS~lPll~~P 131 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFP 131 (194)
T ss_pred cCCCeeeeEEeccccccCc
Confidence 2245799999877755433
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.25 E-value=0.00031 Score=64.83 Aligned_cols=70 Identities=29% Similarity=0.265 Sum_probs=58.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.|.+|||+|+|+|--++..+.. +...|++.|+++.....++-|++.+|+. |.+++.|..- .+..||+||+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g----~~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG----SPPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC----CCcceeEEEe
Confidence 4899999999999988766654 5679999999999999999999999985 7888888654 2367999886
No 233
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.20 E-value=0.0011 Score=63.16 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=42.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~ 380 (451)
.+..+||+||-.|..|++||...+. ..|+++||++..++.++++++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence 4568999999999999999999874 6799999999999999999875
No 234
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00094 Score=63.04 Aligned_cols=89 Identities=27% Similarity=0.425 Sum_probs=61.7
Q ss_pred CeEEeecCCCchHHHHHHHHcCC----Cc----eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc------cc
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSG----QG----LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA------DN 400 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~----~g----~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~------~~ 400 (451)
.+|+|+||+||.++..+++.+.. .+ .|+|||+.+- ..+++ |..+++|.+... ..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCc-eEEeecccCCHhHHHHHHHH
Confidence 58999999999999999987754 22 3999998753 24555 667889987642 12
Q ss_pred C-CCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHHHHHHHHHHhh
Q 012998 401 S-TVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAAS 450 (451)
Q Consensus 401 ~-~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~lQ~~lL~~A~ 450 (451)
+ .++.|.|+||--=--+|+ .++.++ +|.+||.+|+
T Consensus 111 fggekAdlVvcDGAPDvTGl-------------Hd~DEy--~Q~qLllaAl 146 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGL-------------HDLDEY--VQAQLLLAAL 146 (294)
T ss_pred hCCCCccEEEeCCCCCcccc-------------ccHHHH--HHHHHHHHHH
Confidence 2 458999999943223343 355655 4666777764
No 235
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.05 E-value=0.00087 Score=63.67 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=65.7
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--CCCcCE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDK 407 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--~~~fD~ 407 (451)
.++||.+||=+||++|..-.|++..+++.|.|+|||.++.-=+.+-..+++- +| |..+..|++...+.- -.-.|+
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tN-iiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TN-IIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CC-ceeeeccCCCchheeeeeeeEEE
Confidence 4789999999999999999999999999999999999987766666555543 34 566778988754321 235788
Q ss_pred EEEcCCCCCc
Q 012998 408 VLLDAPCSGL 417 (451)
Q Consensus 408 VlvD~PCSg~ 417 (451)
||.|++-+-.
T Consensus 230 IFaDvaqpdq 239 (317)
T KOG1596|consen 230 IFADVAQPDQ 239 (317)
T ss_pred EeccCCCchh
Confidence 8888775543
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.01 E-value=0.0026 Score=60.06 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=54.7
Q ss_pred EEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
|.|+||-=|...+.+.+. +...+++|+|+++.-++.+++++++.|+.++|++..+|+...... .+..|.|++
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE
Confidence 689999999999999886 233579999999999999999999999999999999998764321 123687776
No 237
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.00 E-value=0.00073 Score=64.37 Aligned_cols=80 Identities=11% Similarity=0.134 Sum_probs=50.6
Q ss_pred hhhCCCCCC-eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 327 AVVDPQPGQ-SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 327 ~~l~~~~g~-~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
.+....+++ .++|+|||+|--+..+|+.. ..|+|+|+|+.||+.+++.-...-..-..+....+...+.. .+++.
T Consensus 26 ~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g-~e~SV 101 (261)
T KOG3010|consen 26 KIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLG-GEESV 101 (261)
T ss_pred HHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccC-CCcce
Confidence 334445565 89999999996566666663 57999999999999887654322221112223333333322 25788
Q ss_pred CEEEE
Q 012998 406 DKVLL 410 (451)
Q Consensus 406 D~Vlv 410 (451)
|.|++
T Consensus 102 DlI~~ 106 (261)
T KOG3010|consen 102 DLITA 106 (261)
T ss_pred eeehh
Confidence 98875
No 238
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0016 Score=65.64 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
...|+|.-+|+|--++.+|...+.. +|+.+|+|+...+.+++|++.+...+ ...++.|+..+.......||+|=+||=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCC
Confidence 6799999999999999999887654 89999999999999999999995554 556678988776544578999999984
No 239
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.93 E-value=0.0067 Score=58.34 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCC
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVK 404 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~ 404 (451)
+....+..+..+|+|+|.|.|..+..++...+ .-+++.+|. +..++.+++ .++|+++.+|+.+ + .+.
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~--~-~P~- 158 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFD--P-LPV- 158 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTT--C-CSS-
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHh--h-hcc-
Confidence 34455666677999999999999999998865 579999998 777877777 4579999999973 2 234
Q ss_pred cCEEEEcCCCCCccccccCCcccccCCHhHHHH
Q 012998 405 CDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEE 437 (451)
Q Consensus 405 fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~ 437 (451)
+|+|++ .. +.+.|++++...
T Consensus 159 ~D~~~l------~~-------vLh~~~d~~~~~ 178 (241)
T PF00891_consen 159 ADVYLL------RH-------VLHDWSDEDCVK 178 (241)
T ss_dssp ESEEEE------ES-------SGGGS-HHHHHH
T ss_pred ccceee------eh-------hhhhcchHHHHH
Confidence 999997 22 345577777633
No 240
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.89 E-value=0.00033 Score=66.14 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=47.9
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcCEE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKV 408 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD~V 408 (451)
+..+-.++||+|||+|-.+-.+-.+ ..+++++|+|..|++.+.+. |+-+ +..++|+..+.. ...++||.|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccch
Confidence 3344579999999999998888766 36899999999999987653 2222 234555544432 224556655
Q ss_pred E
Q 012998 409 L 409 (451)
Q Consensus 409 l 409 (451)
.
T Consensus 193 ~ 193 (287)
T COG4976 193 V 193 (287)
T ss_pred h
Confidence 3
No 241
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.86 E-value=0.0033 Score=63.71 Aligned_cols=76 Identities=22% Similarity=0.262 Sum_probs=49.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEEcCcccccc--c-c
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ---------VNSVIRTIHADLRTFA--D-N 400 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g---------~~~~I~~~~~Da~~~~--~-~ 400 (451)
++.+|||||||-||-..-.... +-+.++++|++...++.++++.+.+. ..-...++.+|...-. . .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999999977666553 45899999999999999999883322 1112456777765321 1 1
Q ss_pred C--CCCcCEEEE
Q 012998 401 S--TVKCDKVLL 410 (451)
Q Consensus 401 ~--~~~fD~Vlv 410 (451)
. ...||+|-|
T Consensus 140 ~~~~~~FDvVSc 151 (331)
T PF03291_consen 140 PPRSRKFDVVSC 151 (331)
T ss_dssp SSTTS-EEEEEE
T ss_pred cccCCCcceeeh
Confidence 1 247888865
No 242
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.83 E-value=0.002 Score=64.23 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=56.7
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEEcCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLLDAPC 414 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~VlvD~PC 414 (451)
+|+|+|||.||.+.-+-+. +--.|.|+|+++..++..+.|.. ....+|...+.... +..+|+++.=|||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6999999999999888664 22479999999999999999886 35678887765321 1159999999999
Q ss_pred CCcccccc
Q 012998 415 SGLGVLSK 422 (451)
Q Consensus 415 Sg~G~lrr 422 (451)
.+.-+..+
T Consensus 72 Q~fS~ag~ 79 (335)
T PF00145_consen 72 QGFSIAGK 79 (335)
T ss_dssp TTTSTTST
T ss_pred ceEecccc
Confidence 99888775
No 243
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.82 E-value=0.00046 Score=67.48 Aligned_cols=75 Identities=28% Similarity=0.358 Sum_probs=61.7
Q ss_pred CCCeEEeecCCCchHHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 333 PGQSIVDCCAAPGGKTL-YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~-~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.|+.|.||.||-|++|+ .+... +...|+|+|.++..++.++++++.+++.++..++.+|-+... +....|+|.+-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheeec
Confidence 46899999999999999 44443 467999999999999999999999998877677888877654 34678888765
No 244
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.76 E-value=0.0083 Score=58.96 Aligned_cols=87 Identities=11% Similarity=-0.001 Sum_probs=67.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--CCCcCEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKVL 409 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--~~~fD~Vl 409 (451)
..-+|||+|||+|.--+-+.+..+. .-.|.-.|.++..++..++.++..|+.+.++|.++|+.+..... ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 3458999999999988877776554 35899999999999999999999999997799999998754322 33568887
Q ss_pred EcCCCCCccccccCCc
Q 012998 410 LDAPCSGLGVLSKRAD 425 (451)
Q Consensus 410 vD~PCSg~G~lrr~pd 425 (451)
+ +|++---||
T Consensus 215 V------sGL~ElF~D 224 (311)
T PF12147_consen 215 V------SGLYELFPD 224 (311)
T ss_pred E------ecchhhCCc
Confidence 6 565443333
No 245
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.71 E-value=0.0049 Score=58.21 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=54.8
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH-------HcCC-CceEEEEcCcccccc
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK-------LHQV-NSVIRTIHADLRTFA 398 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~-------~~g~-~~~I~~~~~Da~~~~ 398 (451)
..+++.+++..+|+|||.|...+++|... +-.+.+|||+.+...+.++...+ ..|. ...+.+.++|+.+.+
T Consensus 36 ~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~ 114 (205)
T PF08123_consen 36 DELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD 114 (205)
T ss_dssp HHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred HHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence 45678899999999999999888887664 34569999999998877665443 3444 235788899987643
Q ss_pred cc--CCCCcCEEEEcCCCCC
Q 012998 399 DN--STVKCDKVLLDAPCSG 416 (451)
Q Consensus 399 ~~--~~~~fD~VlvD~PCSg 416 (451)
.. .-...|+|+++-=|=+
T Consensus 115 ~~~~~~s~AdvVf~Nn~~F~ 134 (205)
T PF08123_consen 115 FVKDIWSDADVVFVNNTCFD 134 (205)
T ss_dssp HHHHHGHC-SEEEE--TTT-
T ss_pred hHhhhhcCCCEEEEeccccC
Confidence 11 1134799999887743
No 246
>PHA01634 hypothetical protein
Probab=96.61 E-value=0.0093 Score=51.48 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=57.1
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEE
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~V 408 (451)
+++ .|.+|+|+||+.|..++.++-. +...|+|++.++...+..+++++-+.+-+... ... +++. .-+.||+.
T Consensus 25 idv-k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~---eW~~-~Y~~~Di~ 96 (156)
T PHA01634 25 LNV-YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKG---EWNG-EYEDVDIF 96 (156)
T ss_pred eee-cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeecee-ecc---cccc-cCCCcceE
Confidence 344 3889999999999999988764 56799999999999999999998876533221 122 2332 23679999
Q ss_pred EEcC
Q 012998 409 LLDA 412 (451)
Q Consensus 409 lvD~ 412 (451)
.+|-
T Consensus 97 ~iDC 100 (156)
T PHA01634 97 VMDC 100 (156)
T ss_pred EEEc
Confidence 9983
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.004 Score=59.43 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=54.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceE-EEEcCcccccccc-CCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVI-RTIHADLRTFADN-STVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I-~~~~~Da~~~~~~-~~~~fD~Vlv 410 (451)
+|..|||+||.+||+|-.+.+. +..+|+|+|+....+..- +..+.+| ..-..|++.+.+. ..+..|.|++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~k------LR~d~rV~~~E~tN~r~l~~~~~~~~~d~~v~ 150 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWK------LRNDPRVIVLERTNVRYLTPEDFTEKPDLIVI 150 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHh------HhcCCcEEEEecCChhhCCHHHcccCCCeEEE
Confidence 5889999999999999988885 567999999998766531 1112223 3445577665432 2457899999
Q ss_pred cCCCCCc
Q 012998 411 DAPCSGL 417 (451)
Q Consensus 411 D~PCSg~ 417 (451)
|+.--++
T Consensus 151 DvSFISL 157 (245)
T COG1189 151 DVSFISL 157 (245)
T ss_pred EeehhhH
Confidence 9875544
No 248
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.50 E-value=0.0048 Score=62.15 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=59.6
Q ss_pred EEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCCCCC
Q 012998 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAPCSG 416 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg 416 (451)
|+|++||.||.+.-+-+. +--.|.|+|+++..++..+.|... .++.+|..++.......+|+++.-+||.+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 699999999999877653 223577899999999999888632 23457877765322246899999999999
Q ss_pred ccccccCC
Q 012998 417 LGVLSKRA 424 (451)
Q Consensus 417 ~G~lrr~p 424 (451)
.-+..++.
T Consensus 72 fS~ag~~~ 79 (315)
T TIGR00675 72 FSIAGKRK 79 (315)
T ss_pred cchhcccC
Confidence 88766654
No 249
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.0019 Score=67.25 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=73.1
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC---CCCcCE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDK 407 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~---~~~fD~ 407 (451)
-.++-+|||.-||+|--++..|..+++-+.|+|+|.++..++..++|++.+++++.|+..+.|+..+.-.. ...||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 34567999999999999999999999989999999999999999999999999998999999987664222 368999
Q ss_pred EEEcCC
Q 012998 408 VLLDAP 413 (451)
Q Consensus 408 VlvD~P 413 (451)
|=+||=
T Consensus 187 IDLDPy 192 (525)
T KOG1253|consen 187 IDLDPY 192 (525)
T ss_pred EecCCC
Confidence 999984
No 250
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.34 E-value=0.0023 Score=65.40 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=58.8
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce-EEEEcCccccccc
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV-IRTIHADLRTFAD 399 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~-I~~~~~Da~~~~~ 399 (451)
.++|+.|-|+|||.|-+++.++.. .++|+|+|.++++++.++.|++.+.+... |.+++.|+..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 368999999999999999988875 48999999999999999999999888765 8999999987763
No 251
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.08 E-value=0.015 Score=56.32 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=37.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~ 384 (451)
...++||+|||-|+.|..++... ..|+|.|.|+.|..+++ +.|++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~----~kg~~ 138 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLS----KKGFT 138 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHH----hCCCe
Confidence 35689999999999999999875 46999999999976655 45664
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.00 E-value=0.027 Score=56.87 Aligned_cols=88 Identities=9% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HHcC---C-CceEEEEcCccccccccCCCCc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA--KLHQ---V-NSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~--~~~g---~-~~~I~~~~~Da~~~~~~~~~~f 405 (451)
+..++||-+|-|-|--...+... ++-++|+-||++|+|++.++++. ...+ + +.+++++..|+.++.....+.|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44579999999999877777665 44689999999999999999543 3222 1 2379999999999877666799
Q ss_pred CEEEEcCCCCCcccc
Q 012998 406 DKVLLDAPCSGLGVL 420 (451)
Q Consensus 406 D~VlvD~PCSg~G~l 420 (451)
|.|++|-|=-.+-++
T Consensus 367 D~vIVDl~DP~tps~ 381 (508)
T COG4262 367 DVVIVDLPDPSTPSI 381 (508)
T ss_pred cEEEEeCCCCCCcch
Confidence 999999886554443
No 253
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.97 E-value=0.019 Score=57.80 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCccccc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSG---QGLVYAIDINKGRLRILNETAKLHQVNS-VIRTIHADLRTF 397 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~---~g~V~AvDi~~~rl~~l~~~~~~~g~~~-~I~~~~~Da~~~ 397 (451)
.++..++|+|||.|.||..+.+.+.. ...-+++|+|...|+.+.+++....+++ .|.-+++|..+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 35779999999999999998887753 2468999999999999999998444443 234478887653
No 254
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.91 E-value=0.022 Score=53.48 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=59.9
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc-------CCCCcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-------STVKCD 406 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~-------~~~~fD 406 (451)
+.+||++|||+|-.+.++|..++. -+-.-.|.++..+..+...+...|++|....+..|+...... ..+.||
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 336999999999999999999974 566778999999999999999999988555666677654211 235799
Q ss_pred EEEE
Q 012998 407 KVLL 410 (451)
Q Consensus 407 ~Vlv 410 (451)
.|++
T Consensus 105 ~i~~ 108 (204)
T PF06080_consen 105 AIFC 108 (204)
T ss_pred eeee
Confidence 8886
No 255
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.85 E-value=0.0067 Score=64.62 Aligned_cols=39 Identities=23% Similarity=0.403 Sum_probs=35.3
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHH
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKG 369 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~ 369 (451)
++++..|||+||+||++....++.|+-++.|+|+|+-+-
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 457899999999999999999999998899999998764
No 256
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=95.82 E-value=0.0056 Score=57.47 Aligned_cols=93 Identities=22% Similarity=0.308 Sum_probs=69.7
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-----
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----- 399 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~----- 399 (451)
+...+.|.+|...+||.-|.||.|..+.+.-. ...++|.|.+|-.-+.+....+.+=- .++..+.+.+..++.
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el~~-~~l~a~Lg~Fs~~~~l~~~~ 112 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDELMH-PTLKAVLGNFSYIKSLIADT 112 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhhcc-hhHHHHHhhhHHHHHHHHHh
Confidence 45778899999999999999999999998743 57899999999988888777643221 223334444444332
Q ss_pred -cCCCCcCEEEEcCCCCCccc
Q 012998 400 -NSTVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 400 -~~~~~fD~VlvD~PCSg~G~ 419 (451)
..+..||-||.|--||+.-+
T Consensus 113 gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 113 GLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred CCCcCCcceEEeecCcccccc
Confidence 23578999999999998764
No 257
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.68 E-value=0.043 Score=54.09 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=50.0
Q ss_pred CeEEeecCCCchHHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHHH-HcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 335 QSIVDCCAAPGGKTLYMAS-CLSGQGLVYAIDINKGRLRILNETAK-LHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~-~~~~~g~V~AvDi~~~rl~~l~~~~~-~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
.+|+=+||||=-.|..+.. ..+.+..|+++|+++.+.+.+++-++ ..|+.++++++.+|+...... -..||+|++-+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~lAa 200 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFLAA 200 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE-T
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEEhh
Confidence 4999999999887775544 33345689999999999999999888 678888899999999876532 25799999966
Q ss_pred C
Q 012998 413 P 413 (451)
Q Consensus 413 P 413 (451)
-
T Consensus 201 l 201 (276)
T PF03059_consen 201 L 201 (276)
T ss_dssp T
T ss_pred h
Confidence 5
No 258
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.53 E-value=0.051 Score=51.41 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.+.++.|+||==|+.+..+... +...+++|.|+++.-++.+.+++++.++..++++..+|...... ....+|.|++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~-~~d~~d~ivI 91 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE-LEDEIDVIVI 91 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC-ccCCcCEEEE
Confidence 34667999999999999988875 34568999999999999999999999999999999999855432 2346888876
No 259
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.53 E-value=0.03 Score=56.72 Aligned_cols=81 Identities=20% Similarity=0.353 Sum_probs=62.2
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CC-CcCEEEEcC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TV-KCDKVLLDA 412 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~-~fD~VlvD~ 412 (451)
.+++|+|||.||..+-+... +--.+.|+|+++..++..+.|... ..++..|...+.... .. .+|+++-=|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 58999999999999777554 234789999999999999888764 134566766554322 12 789999999
Q ss_pred CCCCccccccC
Q 012998 413 PCSGLGVLSKR 423 (451)
Q Consensus 413 PCSg~G~lrr~ 423 (451)
||-+.-+..++
T Consensus 76 PCQ~FS~aG~r 86 (328)
T COG0270 76 PCQDFSIAGKR 86 (328)
T ss_pred CCcchhhcCcc
Confidence 99999888776
No 260
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.51 E-value=0.047 Score=58.58 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=71.8
Q ss_pred cCceeeecchhhhhhhhhCCC--CCCeEEeecCCCchHHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHHcCCCc-
Q 012998 312 EGLCAVQDESAGLVVAVVDPQ--PGQSIVDCCAAPGGKTLYMASCLS---GQGLVYAIDINKGRLRILNETAKLHQVNS- 385 (451)
Q Consensus 312 ~G~~~vQd~as~l~~~~l~~~--~g~~VLDlcagpG~kT~~la~~~~---~~g~V~AvDi~~~rl~~l~~~~~~~g~~~- 385 (451)
.|.++.-..-..+.+.++.+. |+..|.|+|||+|+.-......++ ....+++.+....+...+..|+.-.|...
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 455555555556666777764 678999999999998765544432 12468999999999999999987776532
Q ss_pred eEEEEcCcccccccc-CCCCcCEEEEcCCCCCc
Q 012998 386 VIRTIHADLRTFADN-STVKCDKVLLDAPCSGL 417 (451)
Q Consensus 386 ~I~~~~~Da~~~~~~-~~~~fD~VlvD~PCSg~ 417 (451)
......+|-..-+.. ...+||.|+.+||-+..
T Consensus 274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~ 306 (501)
T TIGR00497 274 NFNIINADTLTTKEWENENGFEVVVSNPPYSIS 306 (501)
T ss_pred ccCcccCCcCCCccccccccCCEEeecCCcccc
Confidence 223334453332111 13569999999998763
No 261
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=95.46 E-value=0.035 Score=54.83 Aligned_cols=48 Identities=13% Similarity=0.127 Sum_probs=39.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~ 381 (451)
..+|||+|||||.-+..+.+..+...+++++|.|+.+++.++.-++..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 458999999999877666677665568999999999999988877654
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.42 E-value=0.038 Score=51.99 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=36.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHH
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKL 380 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~ 380 (451)
+-++.|-|||.|+.-+-+.-+-++. ..|+|.|++++.++.+++|+.-
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 4589999999999988887654332 4799999999999999999754
No 263
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.34 E-value=0.033 Score=54.24 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcCEEEEc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLLD 411 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD~VlvD 411 (451)
.|..|+=+| --..|...+.+.+-..+|..+|+++..+....+-++.+|+.| |..+..|.++..+ ...++||+.+-|
T Consensus 152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfiTD 228 (354)
T COG1568 152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFITD 228 (354)
T ss_pred CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeeecC
Confidence 467788888 445555555555555689999999999999999999999987 8889999987543 336799999999
Q ss_pred CCCCCcc
Q 012998 412 APCSGLG 418 (451)
Q Consensus 412 ~PCSg~G 418 (451)
||-+=-|
T Consensus 229 PpeTi~a 235 (354)
T COG1568 229 PPETIKA 235 (354)
T ss_pred chhhHHH
Confidence 9987444
No 264
>PRK10458 DNA cytosine methylase; Provisional
Probab=95.15 E-value=0.089 Score=55.75 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc-------------
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------------- 400 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~------------- 400 (451)
.-+++|++||.||.++-+-.. + .-.|.++|+++...+.-+.|....+ + ...+.+|...+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~~p--~-~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYCDP--A-THRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCCCC--c-cceeccChhhCccccccccchhhhhhh
Confidence 458999999999999887543 2 2368899999999999888752111 1 23345565554310
Q ss_pred ---CCCCcCEEEEcCCCCCcccccc
Q 012998 401 ---STVKCDKVLLDAPCSGLGVLSK 422 (451)
Q Consensus 401 ---~~~~fD~VlvD~PCSg~G~lrr 422 (451)
....+|+++.-|||-+.-+..+
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~AG~ 187 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSLAGV 187 (467)
T ss_pred hhccCCCCCEEEEcCCCCccchhcc
Confidence 1125899999999999876553
No 265
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.05 E-value=0.041 Score=56.66 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=52.1
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.|||+|+|+|-.++..+..+ ...|+|+|+-..|.+.+++-..++|..+.|+++..-.+++
T Consensus 69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 69999999999998877764 4579999999999999999999999998898887655544
No 266
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.98 E-value=0.026 Score=54.04 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=50.8
Q ss_pred eEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc---ccCCCCcCEEE
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA---DNSTVKCDKVL 409 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~---~~~~~~fD~Vl 409 (451)
+||++|||.|.....+.+-.++. -.|+|+|.++..++..+++..... .++.....|+..-. +...+++|.|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEE
Confidence 89999999999999888765543 589999999999999998876544 23444455554321 11235666543
No 267
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.94 E-value=0.15 Score=48.07 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=68.0
Q ss_pred eecchhhhhhhhhCCCCCCeEEeecCCCch--HHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCc
Q 012998 317 VQDESAGLVVAVVDPQPGQSIVDCCAAPGG--KTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD 393 (451)
Q Consensus 317 vQd~as~l~~~~l~~~~g~~VLDlcagpG~--kT~~la~~~-~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~D 393 (451)
.|...+.+++.+..-.....+++.||+-|. .|+.||... +-+|++++|-.++..+...++.+..+|+.+.++|+.+|
T Consensus 25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~ 104 (218)
T PF07279_consen 25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE 104 (218)
T ss_pred CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence 344456666666555556789999777443 345444332 34589999999999999999999999998777988888
Q ss_pred c-ccccccCCCCcCEEEEcCC
Q 012998 394 L-RTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 394 a-~~~~~~~~~~fD~VlvD~P 413 (451)
. ..+.+.. ...|.+++|.-
T Consensus 105 ~~e~~~~~~-~~iDF~vVDc~ 124 (218)
T PF07279_consen 105 APEEVMPGL-KGIDFVVVDCK 124 (218)
T ss_pred CHHHHHhhc-cCCCEEEEeCC
Confidence 5 4444332 56899999953
No 268
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.61 E-value=0.041 Score=51.77 Aligned_cols=104 Identities=22% Similarity=0.197 Sum_probs=53.3
Q ss_pred Cceeeecchhhhhhhhh--CCCCCCeEEeecCCCchHHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHHcCCCceE
Q 012998 313 GLCAVQDESAGLVVAVV--DPQPGQSIVDCCAAPGGKTLYMASCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSVI 387 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l--~~~~g~~VLDlcagpG~kT~~la~~~---~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I 387 (451)
|...+|.+.-+.+.+.+ +.+ .+.|+++|.+-||.++..|.++ ++.++|+++|++....... ..+......+|
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI 87 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRI 87 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred CeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCce
Confidence 44555555444443322 233 4699999999999999887654 4679999999975554332 22334445679
Q ss_pred EEEcCcccccccc-----C--CCCcCEEEEcCCCCCccc
Q 012998 388 RTIHADLRTFADN-----S--TVKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 388 ~~~~~Da~~~~~~-----~--~~~fD~VlvD~PCSg~G~ 419 (451)
++++||..+.... . ......|+.|+-.+-.-+
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hv 126 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHV 126 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS----SSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHH
Confidence 9999998654211 1 234568999988555443
No 269
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.44 E-value=0.088 Score=52.47 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=56.1
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc-----eEEEEcCcccc
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS-----VIRTIHADLRT 396 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~-----~I~~~~~Da~~ 396 (451)
|+|+-... ++++.|+|||||-||-.+-.-.. +-+.++++||.+--++.++++.+.+.-.. .+.++.+|-..
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 55555554 46899999999999987766443 45789999999988888887765432111 25677777543
Q ss_pred c-----cccCCCCcCEEEE
Q 012998 397 F-----ADNSTVKCDKVLL 410 (451)
Q Consensus 397 ~-----~~~~~~~fD~Vlv 410 (451)
- ....+.+||+|-|
T Consensus 184 ~~l~d~~e~~dp~fDivSc 202 (389)
T KOG1975|consen 184 ERLMDLLEFKDPRFDIVSC 202 (389)
T ss_pred hHHHHhccCCCCCcceeee
Confidence 1 1111234887754
No 270
>PRK00536 speE spermidine synthase; Provisional
Probab=94.27 E-value=0.19 Score=49.23 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=53.2
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--CC-ceEEEEcCccccccccCCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VN-SVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~~-~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..+||=+|.|-|+....+... + .+|+-||+++..++.+++.+.... ++ .+++++. . +.....++||+|++
T Consensus 73 pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~---~~~~~~~~fDVIIv 145 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-Q---LLDLDIKKYDLIIC 145 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-h---hhhccCCcCCEEEE
Confidence 479999999999999988886 3 499999999999999999655432 22 2466554 1 22212368999999
Q ss_pred c
Q 012998 411 D 411 (451)
Q Consensus 411 D 411 (451)
|
T Consensus 146 D 146 (262)
T PRK00536 146 L 146 (262)
T ss_pred c
Confidence 9
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=94.07 E-value=0.1 Score=51.66 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~ 380 (451)
.+|+.|||-++|+|..+. +|..++ -+-+|+|++++.++.+++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999987544 455543 5789999999999999999853
No 272
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.05 E-value=0.11 Score=50.39 Aligned_cols=70 Identities=24% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..+|+.-.|+||.|||.|-++... .-.|+|||.-+-+ +++-..| .|+-...|...+.+ .....|-.+|
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~P-~r~~idWmVC 276 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFRP-TRSNIDWMVC 276 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhccc---ceeeeeccCccccc-CCCCCceEEe
Confidence 568999999999999999988765 5799999976433 3333334 57888899988865 3467899999
Q ss_pred cC
Q 012998 411 DA 412 (451)
Q Consensus 411 D~ 412 (451)
|.
T Consensus 277 Dm 278 (358)
T COG2933 277 DM 278 (358)
T ss_pred eh
Confidence 95
No 273
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.92 E-value=0.098 Score=49.56 Aligned_cols=74 Identities=18% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.-.+.||+|||.|..|-++... --.+|-.||..+..++.+++.+...+ .....+++....++.+. ..+||+|.+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~--~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~-~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP--VFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE-EGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC--C-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHH--hcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC-CCcEeEEEe
Confidence 3568999999999999876543 24689999999999999998776622 23356777777777643 468999986
No 274
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=93.90 E-value=0.082 Score=47.68 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=37.4
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCceEEEEcCccccccccCCCCcCEEEE
Q 012998 362 YAIDINKGRLRILNETAKLHQ--VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 362 ~AvDi~~~rl~~l~~~~~~~g--~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+|+|+|+.|++.++++.+..+ ..++|+++++|+.+++ ..+++||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEe
Confidence 489999999999987765432 2235899999999886 34578999985
No 275
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=93.90 E-value=0.073 Score=52.88 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=51.6
Q ss_pred CeEEeecCCCchH----HHHHHHHcCC---CceEEEEeCCHHHHHHHHHHH------------------HHc-----C--
Q 012998 335 QSIVDCCAAPGGK----TLYMASCLSG---QGLVYAIDINKGRLRILNETA------------------KLH-----Q-- 382 (451)
Q Consensus 335 ~~VLDlcagpG~k----T~~la~~~~~---~g~V~AvDi~~~rl~~l~~~~------------------~~~-----g-- 382 (451)
-+|+..||++|-= ++.+.+..+. .-+|+|.|+|+..++.+++.. .+. |
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 5999999999964 4444443322 357999999999999998762 100 1
Q ss_pred -----CCceEEEEcCccccccccCCCCcCEEEE
Q 012998 383 -----VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 383 -----~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.+.|+|...|..+.+....+.||+|+|
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c 229 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC 229 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence 2345778888876632112468999996
No 276
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.89 E-value=0.32 Score=40.54 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=46.4
Q ss_pred EEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc-cccCC-CCcCEEEEc
Q 012998 337 IVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNST-VKCDKVLLD 411 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~-~~~~~-~~fD~VlvD 411 (451)
|+|+|||+|..+ .++........++++|+++.++...+......+... +.+..+|.... .+... ..||.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999987 555543322489999999999998555544322221 56667776551 22222 368887433
No 277
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.64 E-value=0.18 Score=48.72 Aligned_cols=73 Identities=21% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.++|+|+|||-==.++..... .+...++|+||+...++.+..-+..+|... .+...|...-. .....|+.|+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~--~~~v~Dl~~~~--~~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVPH--DARVRDLLSDP--PKEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-CE--EEEEE-TTTSH--TTSEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCCc--ceeEeeeeccC--CCCCcchhhH
Confidence 3679999999988777765543 234699999999999999999999999874 44555654432 1234565554
No 278
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.60 E-value=0.13 Score=48.19 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=31.2
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
-.+|+.|||-+||+|..+ .+|..++ -+-+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~-~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTA-VAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHH-HHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHH-HHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 367999999999998754 4555543 479999999999998764
No 279
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.32 E-value=0.21 Score=44.22 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=40.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC-CcCEEEEc
Q 012998 360 LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLD 411 (451)
Q Consensus 360 ~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~-~fD~VlvD 411 (451)
+|+|+||.+..++..+++++..++.++|++++..-..+....+. ++|.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence 59999999999999999999999988899998887777654444 89999886
No 280
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=93.08 E-value=0.07 Score=50.02 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCeEEeecCCCchH----HHHHHHHcCC----CceEEEEeCCHHHHHHHHHHH--------------HHc-----C----
Q 012998 334 GQSIVDCCAAPGGK----TLYMASCLSG----QGLVYAIDINKGRLRILNETA--------------KLH-----Q---- 382 (451)
Q Consensus 334 g~~VLDlcagpG~k----T~~la~~~~~----~g~V~AvDi~~~rl~~l~~~~--------------~~~-----g---- 382 (451)
.-+|+.+||++|-= ++.+.+..+. .-+|+|.|+|+..++.+++.. +++ |
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 45899999999974 3344442221 248999999999999987541 111 1
Q ss_pred ----CCceEEEEcCccccccccCCCCcCEEEE
Q 012998 383 ----VNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 383 ----~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+.+.|+|.+.|..+ .....+.||+|+|
T Consensus 112 v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~C 142 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLD-PDPPFGRFDLIFC 142 (196)
T ss_dssp E-HHHHTTEEEEE--TT--S------EEEEEE
T ss_pred EChHHcCceEEEecccCC-CCcccCCccEEEe
Confidence 12358888888877 2223578999996
No 281
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=92.86 E-value=0.33 Score=47.74 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=34.4
Q ss_pred CCeEEeecCCCch----HHHHHHHHcCC----CceEEEEeCCHHHHHHHHHH
Q 012998 334 GQSIVDCCAAPGG----KTLYMASCLSG----QGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 334 g~~VLDlcagpG~----kT~~la~~~~~----~g~V~AvDi~~~rl~~l~~~ 377 (451)
.-+|+-+||++|- .++.+.+.++. .-.|+|.|+|...|+.++..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC
Confidence 3489999999995 55556666543 46899999999999988743
No 282
>PRK13699 putative methylase; Provisional
Probab=92.79 E-value=0.25 Score=47.34 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=38.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ 382 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g 382 (451)
-.+|+.|||-+||+|..... |..+ +-..+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~--~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQS--GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHc--CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 36899999999999875544 4443 3578899999999999998887654
No 283
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=90.62 E-value=0.3 Score=45.73 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=48.9
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC-------CCceEEEEcCcccccc
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ-------VNSVIRTIHADLRTFA 398 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g-------~~~~I~~~~~Da~~~~ 398 (451)
-.+.|||||-||....++.+.+ ..-|++.||--.-.+-.++.+..++ +.| +.+...++..+.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~l 130 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFL 130 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhc
Confidence 3689999999999999998865 5789999998887777777777766 555 667766665544
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.84 E-value=0.52 Score=45.07 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=57.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEcC-ccccccc---cCCCCcCE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHA-DLRTFAD---NSTVKCDK 407 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~-g~~~~I~~~~~-Da~~~~~---~~~~~fD~ 407 (451)
++-++||+|.|.--+--.+...+. +-+-++.|+++..++.++.++..+ ++.+.|++... |-..+-. ...+.||.
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 566899999886544333433322 247889999999999999999887 77766765533 3322211 12478999
Q ss_pred EEEcCCCCCc
Q 012998 408 VLLDAPCSGL 417 (451)
Q Consensus 408 VlvD~PCSg~ 417 (451)
++|+||--++
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999996543
No 285
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.14 E-value=1.1 Score=49.63 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcC------C-----CceEEEEeCCHHHHHHHHHHHH--------------H-----cCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS------G-----QGLVYAIDINKGRLRILNETAK--------------L-----HQV 383 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~------~-----~g~V~AvDi~~~rl~~l~~~~~--------------~-----~g~ 383 (451)
.-+|+|+|=|+|..++...+... + .-+++++|..+-..+.+.+..+ . .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 35899999999998887776551 1 2378999986532222222211 1 132
Q ss_pred C------c--eEEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHH
Q 012998 384 N------S--VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELK 439 (451)
Q Consensus 384 ~------~--~I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~ 439 (451)
. + .+++..+|+++........||.|++|+=-- .|+|+++ +.+-+..|.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP-----~~np~~W---~~~~~~~l~ 193 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAP-----AKNPDMW---SPNLFNALA 193 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCC-----ccChhhc---cHHHHHHHH
Confidence 1 1 355778999876554446799999996221 2678883 444444443
No 286
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.41 E-value=1.5 Score=44.47 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=52.3
Q ss_pred hCCCCCCeEEeecCC-CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCE
Q 012998 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDK 407 (451)
Q Consensus 329 l~~~~g~~VLDlcag-pG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~ 407 (451)
.++.||++|+=.|+| -|..++++|..++ .+|+|+|+++++++.+++ +|.+..|... |...... ..+.||.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~~i~~~--~~~~~~~-~~~~~d~ 232 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADHVINSS--DSDALEA-VKEIADA 232 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcEEEEcC--CchhhHH-hHhhCcE
Confidence 457899999998887 4456778888775 899999999999988665 5665322211 3222221 1234999
Q ss_pred EEEcCC
Q 012998 408 VLLDAP 413 (451)
Q Consensus 408 VlvD~P 413 (451)
|+.-+|
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 988776
No 287
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.81 E-value=1.6 Score=45.07 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=46.2
Q ss_pred hcCceeee-cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q 012998 311 KEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETA 378 (451)
Q Consensus 311 ~~G~~~vQ-d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~ 378 (451)
..+++|-| .+.+..-.++|++.|+++||=|++| |.-.+.++. .+..+|+|||+|+..+..++=.+
T Consensus 12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL~--~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSA-GCNALDYLL--AGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred ccceeeccccCCcHHHHHHhCCCCCCeEEEEccC-CchHHHHHh--cCCceEEEEeCCHHHHHHHHHHH
Confidence 33444443 3555666788999999999999887 455555533 35589999999999887766443
No 288
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.55 E-value=1.4 Score=44.24 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=44.3
Q ss_pred hhhhhCCCCCCeEEeecCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~-kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
+.....+++|.+||=+||||=| .|...|+.++ ...|+.+|+++.|++.+++ +|.+.
T Consensus 161 Acr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga~~ 217 (354)
T KOG0024|consen 161 ACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGATV 217 (354)
T ss_pred hhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCCeE
Confidence 3345568999999999999955 4555566665 6899999999999999876 68764
No 289
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=86.28 E-value=1.3 Score=42.12 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=52.5
Q ss_pred hhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 324 l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.++.....-.++.|.++|.||||.|..+.+. +..++..||++...+.-++...+.... +..+.++|+..+
T Consensus 41 KIvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~~--~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 41 KIVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAPG--KLRIHHGDVLRF 110 (326)
T ss_pred HHHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCCc--ceEEecccccee
Confidence 3444455556789999999999999998875 346889999999888777766664443 467788888654
No 290
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=85.72 E-value=1.4 Score=38.84 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=29.3
Q ss_pred eecCCCc--hHHHHHH-HHcCCCceEEEEeCCHHHHHHHHHH--HHHc
Q 012998 339 DCCAAPG--GKTLYMA-SCLSGQGLVYAIDINKGRLRILNET--AKLH 381 (451)
Q Consensus 339 DlcagpG--~kT~~la-~~~~~~g~V~AvDi~~~rl~~l~~~--~~~~ 381 (451)
|+||..| ..+..+. ......++|+++|.++..++.++.+ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 7666664 2456678999999999999999999 5444
No 291
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=85.70 E-value=1.2 Score=45.67 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=67.6
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEE
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~V 408 (451)
....|+..++|++||-|+.+..++.. ....++++|.++..+..........++.+.-.++.+|+...+ ..+..||.|
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~v 182 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDGV 182 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCcE
Confidence 34667889999999999999999887 347899999999999999999999998876666777776654 346789876
Q ss_pred -EEcCCCCC
Q 012998 409 -LLDAPCSG 416 (451)
Q Consensus 409 -lvD~PCSg 416 (451)
++|+-|-.
T Consensus 183 ~~ld~~~~~ 191 (364)
T KOG1269|consen 183 RFLEVVCHA 191 (364)
T ss_pred EEEeecccC
Confidence 45666643
No 292
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=84.99 E-value=1.4 Score=46.97 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=57.2
Q ss_pred eEEeecCCCch---HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 336 SIVDCCAAPGG---KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 336 ~VLDlcagpG~---kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
.|+=+|||-|- .++.+|+....+-+++|+|.++.++..++. .+..+.+++|+++..|.+.+.+. .+..|+++
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~V 444 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIV 444 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchH
Confidence 57889999886 466677776667799999999999988876 66667778899999999998732 35667765
No 293
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=83.71 E-value=8.7 Score=34.95 Aligned_cols=79 Identities=14% Similarity=0.116 Sum_probs=46.8
Q ss_pred cCCCchHHHHHHHHcCCCceEEEEeC--CHHHHHH---HHHHHHHcCCCceEEEEcCccccccccC---CCCcCEEEEcC
Q 012998 341 CAAPGGKTLYMASCLSGQGLVYAIDI--NKGRLRI---LNETAKLHQVNSVIRTIHADLRTFADNS---TVKCDKVLLDA 412 (451)
Q Consensus 341 cagpG~kT~~la~~~~~~g~V~AvDi--~~~rl~~---l~~~~~~~g~~~~I~~~~~Da~~~~~~~---~~~fD~VlvD~ 412 (451)
|=|--+++..++...+....|+|.-. .....+. +..|++.+.-.+.......|++.+.... ...||+|+.+=
T Consensus 4 GeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFNF 83 (166)
T PF10354_consen 4 GEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFNF 83 (166)
T ss_pred eccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEeC
Confidence 33444556667776654456766644 3333222 3355554432222235667998876543 57899999999
Q ss_pred CCCCccc
Q 012998 413 PCSGLGV 419 (451)
Q Consensus 413 PCSg~G~ 419 (451)
|+.|.|.
T Consensus 84 PH~G~~~ 90 (166)
T PF10354_consen 84 PHVGGGS 90 (166)
T ss_pred CCCCCCc
Confidence 9998443
No 294
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=83.70 E-value=1.1 Score=42.85 Aligned_cols=71 Identities=8% Similarity=0.047 Sum_probs=52.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
...++|+||+-|...-|+... +-++++-+|.|..|++..+.. +..++. +....+|-+.++ ..+++||.|+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DEE~Ld-f~ens~DLiis 143 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDEEFLD-FKENSVDLIIS 143 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecchhccc-ccccchhhhhh
Confidence 458999999999999988764 457899999999999876543 223443 345667876665 44678999873
No 295
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=83.52 E-value=2.4 Score=43.47 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=39.7
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~ 375 (451)
-+.++..+.+-.+-+.|+|+|+|.|..+..|+-. .+-.|+|||-|....++++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHHH
Confidence 3456666666666689999999999999988754 4568999999965544443
No 296
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=82.19 E-value=3.5 Score=37.45 Aligned_cols=89 Identities=12% Similarity=0.068 Sum_probs=53.8
Q ss_pred ceeeecchhhhhhhhhC--CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Q 012998 314 LCAVQDESAGLVVAVVD--PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391 (451)
Q Consensus 314 ~~~vQd~as~l~~~~l~--~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~ 391 (451)
+|+--|+.+..++..+. ..++.+|+=+||=+-...+.- .......++-.|.+.+--. +|-+ .++.
T Consensus 4 QfwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~~~---~F~f 70 (162)
T PF10237_consen 4 QFWYSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FGGD---EFVF 70 (162)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cCCc---ceEE
Confidence 34444555555555443 245679999988776555433 2334568899999854332 3322 2445
Q ss_pred Ccccc---ccccCCCCcCEEEEcCCCC
Q 012998 392 ADLRT---FADNSTVKCDKVLLDAPCS 415 (451)
Q Consensus 392 ~Da~~---~~~~~~~~fD~VlvD~PCS 415 (451)
-|... ++....++||+|++|||--
T Consensus 71 yD~~~p~~~~~~l~~~~d~vv~DPPFl 97 (162)
T PF10237_consen 71 YDYNEPEELPEELKGKFDVVVIDPPFL 97 (162)
T ss_pred CCCCChhhhhhhcCCCceEEEECCCCC
Confidence 55543 2323357999999999973
No 297
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=81.11 E-value=2.8 Score=41.19 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=43.1
Q ss_pred CeEEeecCC--CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 335 QSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 335 ~~VLDlcag--pG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
...||+||| +-+.+=++|+...+..+|+-||.++--+..++..+....- .+..++.+|+++..
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~ 134 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPE 134 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHH
Confidence 579999999 3446778888888999999999999999999888876543 24678999998753
No 298
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.91 E-value=16 Score=34.78 Aligned_cols=81 Identities=17% Similarity=0.063 Sum_probs=57.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.| |+|+.+.++++.+-. +..|+.++.+...++.+...+...+. .+.++.+|..+.... ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467788887 567888888877653 34899999999888877777766553 366788888764211 12
Q ss_pred CCcCEEEEcCCCCC
Q 012998 403 VKCDKVLLDAPCSG 416 (451)
Q Consensus 403 ~~fD~VlvD~PCSg 416 (451)
+.+|.|+..+..+.
T Consensus 88 ~~id~vi~~ag~~~ 101 (259)
T PRK08213 88 GHVDILVNNAGATW 101 (259)
T ss_pred CCCCEEEECCCCCC
Confidence 46899998776544
No 299
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=80.59 E-value=1.8 Score=40.48 Aligned_cols=42 Identities=24% Similarity=0.337 Sum_probs=37.0
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCH
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~ 368 (451)
.+..++||++|+|+--|.|++|..++..++++|.|+++-..+
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchh
Confidence 345788999999999999999999999999999999985544
No 300
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.54 E-value=3.6 Score=41.24 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=46.5
Q ss_pred hhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCce
Q 012998 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSV 386 (451)
Q Consensus 326 ~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~ 386 (451)
....+++||++|-=.|.|.=|.+..+.....+.++|+++|+|+++.+.++ .+|.++.
T Consensus 185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaTe~ 241 (375)
T KOG0022|consen 185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGATEF 241 (375)
T ss_pred hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCccee
Confidence 45567899999999999988887777766677899999999999998765 4677653
No 301
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=79.81 E-value=6.4 Score=42.89 Aligned_cols=82 Identities=15% Similarity=-0.015 Sum_probs=55.2
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCC-------CceEEEEcCcccccccc
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQV-------NSVIRTIHADLRTFADN 400 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~-------~~~I~~~~~Da~~~~~~ 400 (451)
++.+.|..||-.|+ +|+.+.+++..+- .+..|++++.+...+..+.+.+...++ ...+.++.+|+.+....
T Consensus 75 ~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI 153 (576)
T PLN03209 75 LDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQI 153 (576)
T ss_pred cccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHH
Confidence 44556777776665 5888888887664 345799999999988777665544321 12377888998764321
Q ss_pred --CCCCcCEEEEc
Q 012998 401 --STVKCDKVLLD 411 (451)
Q Consensus 401 --~~~~fD~VlvD 411 (451)
..+..|+|++.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 12468998874
No 302
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=79.57 E-value=4.3 Score=41.14 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=44.4
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
+...+++++|++|.=+|+|-=|.+......+-+.++|+|+|+++.+++.+++ +|.++
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT~ 233 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGATH 233 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCce
Confidence 4456789999999999998666655555555667999999999999998754 67665
No 303
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=79.40 E-value=0.45 Score=44.70 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=34.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
...++||+|||-|-.|.+|+... .+|+|.|.|..|...++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 34689999999999999998764 469999999988877654
No 304
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.30 E-value=3.9 Score=36.56 Aligned_cols=69 Identities=19% Similarity=0.189 Sum_probs=54.3
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.++.-.+..+.+|+|+|-|..-++.++. +--.-+++|+++-.....+-.+-|.|+.....|..-|...+
T Consensus 66 Sll~~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHccCCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 3444566679999999999998877765 22457899999999999999999999987677777776544
No 305
>PRK06194 hypothetical protein; Provisional
Probab=78.87 E-value=9.1 Score=37.11 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=55.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.| |+|+.+.+++..+.. +..|+.+|.+...++...+.+...+. .+.++.+|..+.... ..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777554 557888888876654 34899999998887776666655443 377788898754211 023
Q ss_pred CcCEEEEcCCCCCccc
Q 012998 404 KCDKVLLDAPCSGLGV 419 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G~ 419 (451)
..|.|+..+--++.+.
T Consensus 83 ~id~vi~~Ag~~~~~~ 98 (287)
T PRK06194 83 AVHLLFNNAGVGAGGL 98 (287)
T ss_pred CCCEEEECCCCCCCCC
Confidence 5799999876555443
No 306
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=78.82 E-value=4.8 Score=41.35 Aligned_cols=50 Identities=24% Similarity=0.285 Sum_probs=40.3
Q ss_pred hhhCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012998 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~ 377 (451)
....+++|++||..|||+ |..+.++|..++ .+.|+++|.++.+++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 345677899999999887 778888888864 35699999999998887764
No 307
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=78.34 E-value=7.2 Score=37.15 Aligned_cols=78 Identities=8% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc-cCCCCcCEEEE
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD-NSTVKCDKVLL 410 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-~~~~~fD~Vlv 410 (451)
..|.+||.+|-|-|-..+.+-+. + -.+-+-+|-+++-+++++...-+.. + +|.++.+-..+..+ ..++.||-|+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~gw~ek-~-nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWGWREK-E-NVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcccccc-c-ceEEEecchHhhhccccccCcceeEe
Confidence 56999999999999998888665 3 3455677999999999988765433 2 36666665544332 34678999999
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
|.=
T Consensus 176 DTy 178 (271)
T KOG1709|consen 176 DTY 178 (271)
T ss_pred ech
Confidence 963
No 308
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=76.87 E-value=2.6 Score=42.18 Aligned_cols=78 Identities=10% Similarity=0.183 Sum_probs=55.2
Q ss_pred EeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc--cc----ccCCCCcCEEEEc
Q 012998 338 VDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT--FA----DNSTVKCDKVLLD 411 (451)
Q Consensus 338 LDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~--~~----~~~~~~fD~VlvD 411 (451)
+|+|.|.--.--.+...+.+ -.-+|.|++......++.|+...+++..|.+++..... +. ...+..||.+.|+
T Consensus 107 iDIgtgasci~~llg~rq~n-~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNN-WYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419)
T ss_pred eeccCchhhhHHhhhchhcc-ceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC
Confidence 78877765444344344333 67899999999999999999999999888877764321 11 1113469999999
Q ss_pred CCCCC
Q 012998 412 APCSG 416 (451)
Q Consensus 412 ~PCSg 416 (451)
||--.
T Consensus 186 PPFfe 190 (419)
T KOG2912|consen 186 PPFFE 190 (419)
T ss_pred Cchhh
Confidence 99643
No 309
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=76.79 E-value=1.9 Score=45.63 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.8
Q ss_pred CeEEeecCCCchHHHHHHHH
Q 012998 335 QSIVDCCAAPGGKTLYMASC 354 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~ 354 (451)
..+||+|||.|+++.+|.+.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER 138 (506)
T ss_pred EEEEeccceeehhHHHHhhC
Confidence 36999999999999998875
No 310
>PRK08251 short chain dehydrogenase; Provisional
Probab=76.48 E-value=19 Score=33.97 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=55.6
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.| |+|+.+..++..+... ..|+.++.++.+++.+...+....-...+.++..|..+.... ..+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677666 5788888888766433 489999999998887777665442222477888888764211 124
Q ss_pred CcCEEEEcCCCCCcc
Q 012998 404 KCDKVLLDAPCSGLG 418 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G 418 (451)
..|.|+..+-.+..+
T Consensus 81 ~id~vi~~ag~~~~~ 95 (248)
T PRK08251 81 GLDRVIVNAGIGKGA 95 (248)
T ss_pred CCCEEEECCCcCCCC
Confidence 689999876544333
No 311
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=76.44 E-value=3.4 Score=40.12 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=39.1
Q ss_pred ecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCEEEEcCCCCC
Q 012998 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAPCSG 416 (451)
Q Consensus 340 lcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~VlvD~PCSg 416 (451)
+..-||+=.+ ++.++..+.+.+.+|+.+.-.+.+++++... .+|.+.+.|+...... +..+=-+||+|||.--
T Consensus 62 l~~YPGSP~i-a~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQ 137 (245)
T ss_dssp --EEE-HHHH-HHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----S
T ss_pred cCcCCCCHHH-HHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCC
Confidence 4456666443 4455677889999999999999999988752 3589999998653211 1234469999999643
No 312
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=76.35 E-value=3.1 Score=34.64 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=46.1
Q ss_pred CCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCEEEEcCC
Q 012998 342 AAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLLDAP 413 (451)
Q Consensus 342 agpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~VlvD~P 413 (451)
||.|..+..+++.+...+ .|+.+|.+++.++.+++ .| +.++.+|+.+.... .-...|.|++..+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC
Confidence 677889999998887777 79999999999887654 33 34678998765321 1256888988766
No 313
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.91 E-value=16 Score=34.41 Aligned_cols=76 Identities=17% Similarity=0.107 Sum_probs=51.8
Q ss_pred eEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc------CCCCcCEE
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------STVKCDKV 408 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~------~~~~fD~V 408 (451)
+||-.| |+|+.+..++..+-.. ..|++++.++...+.+.+.+...+-. ++.++.+|..+.... ....+|.|
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAV-AVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 566555 5688888887766544 48999999998887766665544333 478888998764321 12357999
Q ss_pred EEcCC
Q 012998 409 LLDAP 413 (451)
Q Consensus 409 lvD~P 413 (451)
+..+.
T Consensus 81 v~~ag 85 (243)
T PRK07102 81 LIAVG 85 (243)
T ss_pred EECCc
Confidence 98764
No 314
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.75 E-value=13 Score=35.35 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=55.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+|| +..|+|+.+.+++..+-.. ..|+.++.++...+.+.+.+...+. .+.++.+|..+.... ..+
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56677 4555678888887765433 4899999999888877777766553 367788888654311 124
Q ss_pred CcCEEEEcCCCCCcc
Q 012998 404 KCDKVLLDAPCSGLG 418 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G 418 (451)
..|.|+..+-+...+
T Consensus 84 ~~d~vi~~ag~~~~~ 98 (262)
T PRK13394 84 SVDILVSNAGIQIVN 98 (262)
T ss_pred CCCEEEECCccCCCC
Confidence 589998876554433
No 315
>PTZ00357 methyltransferase; Provisional
Probab=74.11 E-value=11 Score=41.63 Aligned_cols=63 Identities=22% Similarity=0.115 Sum_probs=43.4
Q ss_pred eEEeecCCCchH---HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH-cCC-------CceEEEEcCcccccc
Q 012998 336 SIVDCCAAPGGK---TLYMASCLSGQGLVYAIDINKGRLRILNETAKL-HQV-------NSVIRTIHADLRTFA 398 (451)
Q Consensus 336 ~VLDlcagpG~k---T~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~-~g~-------~~~I~~~~~Da~~~~ 398 (451)
.|+=+|||-|-. ++.+++..+-.-+|+|||.|+..+.....+... ... .+.|+++..|++.+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 589999999985 455566555566899999997654333333211 122 346999999999984
No 316
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.91 E-value=17 Score=34.48 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||=.| |+|+.+.+++..+...| +|++++.+++.++.+...+...+. .+.++..|+.+.... ..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 367788777 66788888887765444 799999999998887777665543 367778887653210 12
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+.+|.|+..+.-
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999886643
No 317
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=73.56 E-value=6.9 Score=32.09 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=32.5
Q ss_pred ecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 340 lcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
+|||.|.-|..+++. +++.++..|++ +++...+..++... ...+|+|++
T Consensus 4 ~~Cg~G~sTS~~~~k-------------------i~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~Diil~ 52 (96)
T cd05564 4 LVCSAGMSTSILVKK-------------------MKKAAEKRGID--AEIEAVPESELEEY-IDDADVVLL 52 (96)
T ss_pred EEcCCCchHHHHHHH-------------------HHHHHHHCCCc--eEEEEecHHHHHHh-cCCCCEEEE
Confidence 688999877766554 36667777875 56666666555322 246788876
No 318
>PRK12829 short chain dehydrogenase; Provisional
Probab=73.50 E-value=12 Score=35.58 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=53.8
Q ss_pred hhCCCCCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc------
Q 012998 328 VVDPQPGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN------ 400 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~------ 400 (451)
.+...++.+||-.|+. |+.+.+++..+- .+..|++++.++..++.+.+..... ++.++.+|+.+....
T Consensus 5 ~~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 5 LLKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDT 79 (264)
T ss_pred HhhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHH
Confidence 3444568899988875 778888877654 3458999999988777665544322 366778887654311
Q ss_pred ---CCCCcCEEEEcCC
Q 012998 401 ---STVKCDKVLLDAP 413 (451)
Q Consensus 401 ---~~~~fD~VlvD~P 413 (451)
..+.+|.|+..+.
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 0146899988664
No 319
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.44 E-value=7.9 Score=39.46 Aligned_cols=46 Identities=30% Similarity=0.476 Sum_probs=35.9
Q ss_pred CCCCCeEEeecCCCchHH-HHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q 012998 331 PQPGQSIVDCCAAPGGKT-LYMASCLSGQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT-~~la~~~~~~g~V~AvDi~~~rl~~l~~~ 377 (451)
..++.+|+=+||||=|.. .+++..+ +..+|+++|.++.|++.+++.
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHHh
Confidence 455669999999995554 5555554 468999999999999998774
No 320
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=73.28 E-value=8 Score=31.73 Aligned_cols=54 Identities=20% Similarity=0.231 Sum_probs=34.9
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
+|| +|||.|.-|..++..+ ++.++..|++ +++...+..++... ...+|+||+=|
T Consensus 5 ~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi~--~~v~a~~~~~~~~~-~~~~Dvill~p 58 (95)
T TIGR00853 5 NIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGVP--VKIAAGSYGAAGEK-LDDADVVLLAP 58 (95)
T ss_pred EEE-EECCCchhHHHHHHHH-------------------HHHHHHCCCc--EEEEEecHHHHHhh-cCCCCEEEECc
Confidence 555 7888887777666543 5666778885 56666666555432 24589888743
No 321
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=72.85 E-value=15 Score=34.71 Aligned_cols=82 Identities=17% Similarity=0.066 Sum_probs=54.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-----------
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----------- 398 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~----------- 398 (451)
..++.+||=.|+ +|+.+..++..+-.. .+|++++.+...+..+.+.++..+... +.++..|.....
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQ-PAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCC-ceEEEecccCCCHHHHHHHHHHH
Confidence 346778888884 677888777665433 489999999988888777777666443 556666664210
Q ss_pred ccCCCCcCEEEEcCCC
Q 012998 399 DNSTVKCDKVLLDAPC 414 (451)
Q Consensus 399 ~~~~~~fD~VlvD~PC 414 (451)
....+.+|.|+..+-.
T Consensus 87 ~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 87 EEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHhCCCCEEEECCcc
Confidence 0112468999987643
No 322
>PF04031 Las1: Las1-like ; InterPro: IPR007174 Las1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth [].
Probab=71.78 E-value=25 Score=31.59 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=26.7
Q ss_pred CchhHHHHHHHHHhhccCCCCCCCcCcCCchHHHHHHHHhhCChHHHHHH
Q 012998 187 AGNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (451)
Q Consensus 187 ~~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wl~~~ 236 (451)
..+|||++++........ ...-.+|...++|.|||+.
T Consensus 84 ivRfVNgl~D~~Q~~~~a-------------~si~~~A~~iglP~~lVdl 120 (154)
T PF04031_consen 84 IVRFVNGLVDPSQQGKYA-------------RSIASLAKEIGLPSWLVDL 120 (154)
T ss_pred HHHHHHHhhhHhhccchh-------------hhHHHHHHHcCCCHHHHHH
Confidence 568999999987642211 1244678889999999985
No 323
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=71.36 E-value=8.1 Score=36.64 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
..++-.|-|+|||-+..+ ..+++.-+|...|+-.. ... ++.+|....| ..++++|++++
T Consensus 70 ~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~--------------n~~--Vtacdia~vP-L~~~svDv~Vf 128 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAP--------------NPR--VTACDIANVP-LEDESVDVAVF 128 (219)
T ss_dssp S-TTS-EEEES-TT-HHH----HH--S---EEEEESS-S--------------STT--EEES-TTS-S---TT-EEEEEE
T ss_pred cCCCEEEEECCCchHHHH----HhcccCceEEEeeccCC--------------CCC--EEEecCccCc-CCCCceeEEEE
Confidence 334579999999998755 44455568999998642 122 3458888776 35688999887
No 324
>PRK06914 short chain dehydrogenase; Provisional
Probab=71.15 E-value=19 Score=34.64 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=55.6
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CCCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~~~ 404 (451)
+.+||-.| |+|+.+..++..+-. +..|++++.++..++...+.+...+....+.++.+|..+.... ..+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 34566555 556777777765443 3489999999988887777666666544578888888764311 0146
Q ss_pred cCEEEEcCCCCCcc
Q 012998 405 CDKVLLDAPCSGLG 418 (451)
Q Consensus 405 fD~VlvD~PCSg~G 418 (451)
.|.|+..+..+..+
T Consensus 82 id~vv~~ag~~~~~ 95 (280)
T PRK06914 82 IDLLVNNAGYANGG 95 (280)
T ss_pred eeEEEECCcccccC
Confidence 79998877554444
No 325
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=69.97 E-value=25 Score=34.24 Aligned_cols=92 Identities=13% Similarity=0.084 Sum_probs=58.2
Q ss_pred hhhCCCCCCeEEeecCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV 403 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~---g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~ 403 (451)
++.....+...+|+|+|+-.||..+...+... .+-+.+|++..-++...+.+.+.-..-.|.-+++|........++
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~ 151 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR 151 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC
Confidence 34445558899999999999999988877654 367899999998876555554432221256677776543322222
Q ss_pred CcCEEEEcCCCCCccc
Q 012998 404 KCDKVLLDAPCSGLGV 419 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G~ 419 (451)
.--++++ -|=|.+|-
T Consensus 152 ~~~Rl~~-flGStlGN 166 (321)
T COG4301 152 GGRRLFV-FLGSTLGN 166 (321)
T ss_pred CCeEEEE-EecccccC
Confidence 2233333 34455665
No 326
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=69.80 E-value=26 Score=33.16 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.|+ +|+.+..++..+- .+.+|+.++.++..++.+.+.++..|. .+.++..|..+.... ..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678887774 6888888887654 345899999999888877777776654 366778887653210 12
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+..|.|+..+-..
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 4689998866443
No 327
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=69 Score=31.33 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHH---------HHHHHHHHHcCCCceEEEEcCccccccc---
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRL---------RILNETAKLHQVNSVIRTIHADLRTFAD--- 399 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl---------~~l~~~~~~~g~~~~I~~~~~Da~~~~~--- 399 (451)
...+||-+|=|-=.++..|+...+ ..+.|+|...+..-. ..--+.++++|.. .+...|++.+..
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~---I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT---ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc---eEecccceeEEeccc
Confidence 456889988888888888888877 556777775554431 2222446677764 245557665532
Q ss_pred cCCCCcCEEEEcCCCCCcccc
Q 012998 400 NSTVKCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 400 ~~~~~fD~VlvD~PCSg~G~l 420 (451)
.-.+.||.|+.+-|.+|.|.-
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~ 153 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK 153 (282)
T ss_pred ccccccceEEEcCCCCCCCcc
Confidence 124689999999999999984
No 328
>PRK07831 short chain dehydrogenase; Provisional
Probab=69.47 E-value=23 Score=33.73 Aligned_cols=80 Identities=18% Similarity=0.116 Sum_probs=52.6
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEcCcccccccc---------C
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------S 401 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~-~g~~~~I~~~~~Da~~~~~~---------~ 401 (451)
.+.+||=.|++.++.+..++..+.. +..|+.+|.+...++...+.++. .|.. .+.++..|..+.... .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG-RVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCc-eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888876533566666655433 35799999999888877776655 4433 367788887653210 1
Q ss_pred CCCcCEEEEcCC
Q 012998 402 TVKCDKVLLDAP 413 (451)
Q Consensus 402 ~~~fD~VlvD~P 413 (451)
.+..|.++..+-
T Consensus 95 ~g~id~li~~ag 106 (262)
T PRK07831 95 LGRLDVLVNNAG 106 (262)
T ss_pred cCCCCEEEECCC
Confidence 246899988764
No 329
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=68.95 E-value=11 Score=37.45 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=47.3
Q ss_pred hhhcCceeee-cchhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q 012998 309 LLKEGLCAVQ-DESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (451)
Q Consensus 309 ~~~~G~~~vQ-d~as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~ 379 (451)
.+..|..|.| ++.+..=..++...+|.+|.-+|+|--..-.+++. ...+|.+||+|+..+..-+-.+.
T Consensus 38 vlFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr---~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 38 VLFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSR---APARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred HHhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhc---CCceeEEEeCCHHHHHHHHHHHH
Confidence 3556666665 35555556677778899999998886655555544 35799999999998776554444
No 330
>PRK07576 short chain dehydrogenase; Provisional
Probab=68.93 E-value=21 Score=34.30 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=52.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
++.+||-.|+ +|+.+..++..+.. +..|++++.++..+....+.+...+. .+.++..|..+.... ..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678888874 67788877765543 34899999998888777666665543 256777887653210 12
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+.+|.|+..+
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 4679999865
No 331
>PRK06139 short chain dehydrogenase; Provisional
Probab=68.66 E-value=26 Score=35.31 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=56.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~ 402 (451)
.+..||=.|+ +|+.+..++..+. .+.+|+.++.++..++.+.+.++..|.. +.++..|..+... ...
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~--~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAE--VLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3567776655 5777887776554 3458999999999999888888877753 5667778765321 012
Q ss_pred CCcCEEEEcCCCCCcc
Q 012998 403 VKCDKVLLDAPCSGLG 418 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~G 418 (451)
+.+|.++..+-....|
T Consensus 83 g~iD~lVnnAG~~~~~ 98 (330)
T PRK06139 83 GRIDVWVNNVGVGAVG 98 (330)
T ss_pred CCCCEEEECCCcCCCC
Confidence 5789999876544333
No 332
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.52 E-value=24 Score=33.00 Aligned_cols=79 Identities=18% Similarity=0.115 Sum_probs=54.0
Q ss_pred CCeEEeecCCCchHHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCL-SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~-~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||-.|+ +|+.+.+++..+ ..+..|+.++.++..++.....++..+. .+.++..|..+.... ..+
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV--KVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567787774 788888887754 3345899999998887776666655442 477888887654310 014
Q ss_pred CcCEEEEcCCCC
Q 012998 404 KCDKVLLDAPCS 415 (451)
Q Consensus 404 ~fD~VlvD~PCS 415 (451)
..|.|++.+...
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 689999876543
No 333
>PRK07814 short chain dehydrogenase; Provisional
Probab=68.27 E-value=25 Score=33.62 Aligned_cols=77 Identities=17% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||=.|+ +|+.+.++++.+- .+.+|+.++.++..++.+.+.++..+. .+.++..|..+.... ..
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678888885 6778888887553 345899999999888877777765553 367788887764321 01
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+.+|.|+..+
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 4689888865
No 334
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=68.18 E-value=12 Score=36.55 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=39.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~ 383 (451)
-.+|+.|||-.+|+|...... ..++ -..+++|+++.-++.+.+.+...-.
T Consensus 220 s~~~diVlDpf~GsGtt~~aa-~~~~--r~~ig~e~~~~y~~~~~~r~~~~~~ 269 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAA-KNLG--RRFIGIEINPEYVEVALKRLQEGLN 269 (302)
T ss_pred CCCCCEEeecCCCCChHHHHH-HHcC--CceEEEecCHHHHHHHHHHHHhhcc
Confidence 468999999999999766544 4432 4688999999999999998886543
No 335
>PRK05599 hypothetical protein; Provisional
Probab=68.02 E-value=22 Score=33.78 Aligned_cols=75 Identities=9% Similarity=-0.015 Sum_probs=52.8
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCCCcC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCD 406 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~~fD 406 (451)
.||=.|+ ++|.+..++..+..+.+|+.++.++..++.+.+.++..|-. .+.++..|+.+... ...+..|
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 4565555 56778888877766678999999999998888888776643 36677888766421 1125789
Q ss_pred EEEEcC
Q 012998 407 KVLLDA 412 (451)
Q Consensus 407 ~VlvD~ 412 (451)
.++..+
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 988754
No 336
>PRK08703 short chain dehydrogenase; Provisional
Probab=66.60 E-value=22 Score=33.37 Aligned_cols=79 Identities=15% Similarity=0.084 Sum_probs=51.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-----c-------
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-----D------- 399 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-----~------- 399 (451)
.|.+||=.|| +|+.+..++..+.. +..|+.++.++..++.+.+.+...+-.. +.++..|..+.. .
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPE-PFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCC-cceEEeeecccchHHHHHHHHHHHH
Confidence 3568888884 67788887766553 3589999999998887777776555332 445556653210 0
Q ss_pred cCCCCcCEEEEcCC
Q 012998 400 NSTVKCDKVLLDAP 413 (451)
Q Consensus 400 ~~~~~fD~VlvD~P 413 (451)
...+.+|.|+..+-
T Consensus 83 ~~~~~id~vi~~ag 96 (239)
T PRK08703 83 ATQGKLDGIVHCAG 96 (239)
T ss_pred HhCCCCCEEEEecc
Confidence 01146799988764
No 337
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.60 E-value=53 Score=30.78 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=52.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||=.| |+|+.+.+++..+.. +.+|+.++.++..+..+...+...+. .+.++..|..+.... ..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG--TAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 356677555 667888888876643 35899999998777666665554332 356677887754311 11
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+.+|.|+..+...
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 3689999877643
No 338
>PRK07062 short chain dehydrogenase; Provisional
Probab=66.53 E-value=33 Score=32.72 Aligned_cols=81 Identities=16% Similarity=0.057 Sum_probs=53.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|..+|=.|++ |+.+..++..+. .+.+|+.++.++..++.+.+.+....-...+.++..|..+.... ..
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36678877755 567777776653 34689999999988887776665542222467778887764311 12
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+.+|.++..+-.
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998887643
No 339
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.42 E-value=21 Score=35.20 Aligned_cols=50 Identities=20% Similarity=0.394 Sum_probs=36.2
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 330 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 330 ~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
.++++++||..++|. |..++++|..++ ..|++++.++.+.+.+++ .|++.
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~~ 212 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGADE 212 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCCE
Confidence 467899999976653 666777777653 569999999988877643 56643
No 340
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=66.14 E-value=17 Score=35.29 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=56.7
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDK 407 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~ 407 (451)
..+|.. |...+|+=-.+ +.++..+.++.++|+.+.=...++.++. +.. ++.+..+|....... +.++=-.
T Consensus 87 lN~~~~-l~~YpGSP~lA---~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~-~vrv~~~DG~~~l~a~LPP~erRgl 159 (279)
T COG2961 87 LNPGGG-LRYYPGSPLLA---RQLLREQDRLVLTELHPSDAPLLRNNFA--GDR-RVRVLRGDGFLALKAHLPPKERRGL 159 (279)
T ss_pred hCCCCC-cccCCCCHHHH---HHHcchhceeeeeecCccHHHHHHHHhC--CCc-ceEEEecCcHHHHhhhCCCCCcceE
Confidence 345544 77777765444 3444567899999999999999999997 444 488999997543211 1244579
Q ss_pred EEEcCCCCCcc
Q 012998 408 VLLDAPCSGLG 418 (451)
Q Consensus 408 VlvD~PCSg~G 418 (451)
||+|||.---+
T Consensus 160 VLIDPPfE~~~ 170 (279)
T COG2961 160 VLIDPPFELKD 170 (279)
T ss_pred EEeCCCccccc
Confidence 99999986544
No 341
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=65.78 E-value=19 Score=36.34 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.9
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~ 384 (451)
..+++|++||=.|+|+ |..++++|..++ ...|+++|.++.+++.++ ++|.+
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 4567899999887643 333455566542 235999999999988874 46764
No 342
>PRK06172 short chain dehydrogenase; Provisional
Probab=65.57 E-value=31 Score=32.57 Aligned_cols=76 Identities=12% Similarity=-0.024 Sum_probs=52.9
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+..++..+.. +.+|+.++.++..++.+.+.++..+. .+.++.+|+.+.... ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567887776 56777777765543 35899999999988887777776653 377888888653210 124
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
++|.|+..+
T Consensus 84 ~id~li~~a 92 (253)
T PRK06172 84 RLDYAFNNA 92 (253)
T ss_pred CCCEEEECC
Confidence 679998755
No 343
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.55 E-value=30 Score=32.43 Aligned_cols=78 Identities=21% Similarity=0.068 Sum_probs=53.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||=.| |+|+.+.+++..+.. +.+|++++.++..+....+.++..+. .+.++.+|+.+.... ..
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356777444 578888888876653 35899999998888877776665543 377888888754211 01
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.|+..+-
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46899888653
No 344
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=65.24 E-value=49 Score=32.47 Aligned_cols=81 Identities=16% Similarity=0.125 Sum_probs=49.0
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~Vlv 410 (451)
|.+||=.|+ +|..+.+++..+-..| .|++++.+..............+....++++.+|..+.... ....+|.|+.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 456665554 7999999988775544 78888877654332222221122223478889998764321 1235799988
Q ss_pred cCCCC
Q 012998 411 DAPCS 415 (451)
Q Consensus 411 D~PCS 415 (451)
-+...
T Consensus 83 ~A~~~ 87 (322)
T PLN02662 83 TASPF 87 (322)
T ss_pred eCCcc
Confidence 77654
No 345
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=65.01 E-value=31 Score=32.52 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.| |+|+.+.+++..+... .+|+.++.++..++.....++..+. ++.++.+|..+.... ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45666554 5688899988866544 4899999999988887777766554 367788887653210 124
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
.+|.|+..+..
T Consensus 81 ~~d~vi~~a~~ 91 (258)
T PRK12429 81 GVDILVNNAGI 91 (258)
T ss_pred CCCEEEECCCC
Confidence 68999986543
No 346
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.62 E-value=8.7 Score=35.37 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=53.6
Q ss_pred CceeeecchhhhhhhhhCC-CCCCeEEeecCCCchHHHH-HHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEE
Q 012998 313 GLCAVQDESAGLVVAVVDP-QPGQSIVDCCAAPGGKTLY-MASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390 (451)
Q Consensus 313 G~~~vQd~as~l~~~~l~~-~~g~~VLDlcagpG~kT~~-la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~ 390 (451)
-.++.+|-+..++...+.. ..|.+|-=+ +.|--...+ .-+.--+.-.|+-.+.+. +++.+| + .|+
T Consensus 52 qfwy~~eta~~La~e~v~~s~e~~rIacv-S~Psly~y~k~re~~~~~~~v~lfEfDk--------RFe~yg-~---eFv 118 (217)
T KOG3350|consen 52 QFWYSDETARKLAAERVEASGEGSRIACV-SCPSLYVYQKKREIEIPHDQVYLFEFDK--------RFELYG-T---EFV 118 (217)
T ss_pred hhhcCHHHHHHHHHHHHhhcccCceEEEE-eCchHHhhhhhhhccCCceeEEEEEehh--------hHHhcc-c---eeE
Confidence 3456677777777777654 345445444 344321111 111111245788888763 344556 2 456
Q ss_pred cCcccc---ccccCCCCcCEEEEcCCCCCccccc
Q 012998 391 HADLRT---FADNSTVKCDKVLLDAPCSGLGVLS 421 (451)
Q Consensus 391 ~~Da~~---~~~~~~~~fD~VlvD~PCSg~G~lr 421 (451)
.-|... ++....+.||+|+.|||.=+.--++
T Consensus 119 fYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~ 152 (217)
T KOG3350|consen 119 FYDYNCPLDLPDELKAHFDIIVADPPFLSEECLA 152 (217)
T ss_pred EeccCCCCCCHHHHHhcccEEEeCCccccchhhh
Confidence 666543 3333356899999999987655443
No 347
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=64.20 E-value=18 Score=30.24 Aligned_cols=53 Identities=17% Similarity=0.057 Sum_probs=33.1
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC-CCCcCEEEE
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS-TVKCDKVLL 410 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~-~~~fD~Vlv 410 (451)
+|| +|||.|.-|..++.. +++.++..|++ +.+...+..++.... ...||+|++
T Consensus 3 kIL-lvCg~G~STSlla~k-------------------~k~~~~e~gi~--~~i~a~~~~e~~~~~~~~~~DvIll 56 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK-------------------TTEYLKEQGKD--IEVDAITATEGEKAIAAAEYDLYLV 56 (104)
T ss_pred EEE-EECCCchHHHHHHHH-------------------HHHHHHHCCCc--eEEEEecHHHHHHhhccCCCCEEEE
Confidence 344 789999877766654 34566677875 555556655543321 235888886
No 348
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=64.04 E-value=14 Score=36.18 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=44.5
Q ss_pred CCCCeEEeecCCCchHHHHHHHHcCC----CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc
Q 012998 332 QPGQSIVDCCAAPGGKTLYMASCLSG----QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA 398 (451)
Q Consensus 332 ~~g~~VLDlcagpG~kT~~la~~~~~----~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~ 398 (451)
.+...++|+|||.|..+.+++..+.. ...++.||....|.+.=. .+....-...++=+..|..++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~-~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADN-KIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchh-hhhccCCCCceEEEEEEeeccc
Confidence 46679999999999999999998852 368899999877764322 2222221112455566766653
No 349
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=63.23 E-value=64 Score=30.80 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=49.8
Q ss_pred CCCeEEeecCCC-chHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cC
Q 012998 333 PGQSIVDCCAAP-GGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (451)
Q Consensus 333 ~g~~VLDlcagp-G~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~ 401 (451)
.|..||-.|+++ +|.+..+|..+-. +..|+.++.+....+.+.+..+..+ . +.++..|..+... ..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~--~-~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD--A-PIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc--c-ceEEecCcCCHHHHHHHHHHHHHH
Confidence 477899999988 4888888876543 3578888888655444444443333 2 3456778765321 01
Q ss_pred CCCcCEEEEcCC
Q 012998 402 TVKCDKVLLDAP 413 (451)
Q Consensus 402 ~~~fD~VlvD~P 413 (451)
.+..|+++.++-
T Consensus 86 ~g~ld~lv~nAg 97 (258)
T PRK07533 86 WGRLDFLLHSIA 97 (258)
T ss_pred cCCCCEEEEcCc
Confidence 256899998763
No 350
>PRK07677 short chain dehydrogenase; Provisional
Probab=63.17 E-value=39 Score=31.94 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.++|-.|+ +|+.+..++..+.. +..|+.++.+...++.+.+.+...+ ..+.++..|..+.... ..+
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 346776665 55677777665543 3589999999988887777766554 2477888887653210 124
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
..|.|+..+.+
T Consensus 78 ~id~lI~~ag~ 88 (252)
T PRK07677 78 RIDALINNAAG 88 (252)
T ss_pred CccEEEECCCC
Confidence 68999987654
No 351
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=62.91 E-value=39 Score=32.01 Aligned_cols=80 Identities=14% Similarity=0.027 Sum_probs=50.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+..||=.|+ +|+.+.+++..+.. +..|+.+|.+...++.+.+.++...-...+.++..|..+.... ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346777775 57778777766543 3589999999887776665554322112367788887653210 114
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
..|.|+..+-.
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 67998887643
No 352
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.31 E-value=23 Score=28.86 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=31.7
Q ss_pred ecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 340 lcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
++||+|.-|..++.. .+++.++..|++ +++.+.+..++... ...+|+|+.-+|
T Consensus 7 vvCgsG~~TS~m~~~------------------ki~~~l~~~gi~--~~v~~~~~~e~~~~-~~~~D~iv~t~~ 59 (94)
T PRK10310 7 VACGGAVATSTMAAE------------------EIKELCQSHNIP--VELIQCRVNEIETY-MDGVHLICTTAR 59 (94)
T ss_pred EECCCchhHHHHHHH------------------HHHHHHHHCCCe--EEEEEecHHHHhhh-cCCCCEEEECCc
Confidence 678888877766432 345556667764 55555666555421 144677776555
No 353
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.16 E-value=45 Score=31.86 Aligned_cols=81 Identities=12% Similarity=-0.007 Sum_probs=54.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.++|=.|++ |+.+..++..+- .+.+|+.++.++..++.+.+.++..|. .+.++..|..+.... ..
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45677777766 456666665443 346899999999988888877776654 367788888654210 12
Q ss_pred CCcCEEEEcCCCCC
Q 012998 403 VKCDKVLLDAPCSG 416 (451)
Q Consensus 403 ~~fD~VlvD~PCSg 416 (451)
+.+|.++..+-..+
T Consensus 86 ~~id~li~~ag~~~ 99 (265)
T PRK07097 86 GVIDILVNNAGIIK 99 (265)
T ss_pred CCCCEEEECCCCCC
Confidence 46899998765433
No 354
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=62.16 E-value=15 Score=37.06 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=33.4
Q ss_pred CCCCCCeEEeecCCCchH-HHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 330 DPQPGQSIVDCCAAPGGK-TLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~k-T~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
.+++|++||=.|||+=|. +.+++..+.+..+|+++|.++.+++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 457899999998754332 34555543334689999999999988764
No 355
>PRK07063 short chain dehydrogenase; Provisional
Probab=61.88 E-value=48 Score=31.46 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=53.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||-.|++ |+.+..++..+-. +.+|+.++.++..++.+.+.+...+....+.++..|..+.... ..+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6678877765 6777877766543 4589999999998888877776532223477788887654211 124
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
.+|.++..+
T Consensus 86 ~id~li~~a 94 (260)
T PRK07063 86 PLDVLVNNA 94 (260)
T ss_pred CCcEEEECC
Confidence 689988865
No 356
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.80 E-value=40 Score=31.52 Aligned_cols=78 Identities=18% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
+|.++|=.|+ .|+.+..++..+. .+.+|+.+|.++..++.+.+.+...+. .+.++..|..+.... ..
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT--EVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678887775 5777887876554 335799999999888877777766553 366778887553210 11
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.|+..+.
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 46899988654
No 357
>PRK05855 short chain dehydrogenase; Validated
Probab=61.71 E-value=39 Score=36.10 Aligned_cols=84 Identities=19% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.++|=.|+ +|+.+.+++..+... .+|+.++.+...++.+.+.++..|. .+.++.+|..+.... ..
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3566776655 678888888766543 4799999999888888777776665 377888898764311 12
Q ss_pred CCcCEEEEcCCCCCccc
Q 012998 403 VKCDKVLLDAPCSGLGV 419 (451)
Q Consensus 403 ~~fD~VlvD~PCSg~G~ 419 (451)
+..|.++..+-....|.
T Consensus 391 g~id~lv~~Ag~~~~~~ 407 (582)
T PRK05855 391 GVPDIVVNNAGIGMAGG 407 (582)
T ss_pred CCCcEEEECCccCCCCC
Confidence 46899998775544443
No 358
>PRK05867 short chain dehydrogenase; Provisional
Probab=61.61 E-value=40 Score=31.94 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=54.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.|++ |+.+..++..+-. +.+|+.++.+...++.+.+.++..+. .+.++..|..+.... ..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG--KVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 36788888764 5677777766543 35899999999988888877776653 367778887654210 12
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+..|.++..+-
T Consensus 85 g~id~lv~~ag 95 (253)
T PRK05867 85 GGIDIAVCNAG 95 (253)
T ss_pred CCCCEEEECCC
Confidence 47899988764
No 359
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.22 E-value=21 Score=35.97 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=37.2
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~ 384 (451)
..+++|++||=.|||+ |..+.++|..++ ..|+++|.++.+++.+++ +|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCc
Confidence 4567899999999865 555666777653 479999999999887643 5654
No 360
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=61.20 E-value=18 Score=38.89 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCCCceeccCCCceEEEeCC-CcchhchhhhhcCceeeecchhhhhh------hhhCCCCCCeEEeecCCC
Q 012998 272 ADLVMQLNLLKVPHELSLHLDEFIRVKTG-LQNVIQAGLLKEGLCAVQDESAGLVV------AVVDPQPGQSIVDCCAAP 344 (451)
Q Consensus 272 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~vQd~as~l~~------~~l~~~~g~~VLDlcagp 344 (451)
.++.+.|.+.++..-.-+.++ ++... .-++...-.-..|+-.++..+..+.. .++...++++|+=+|||+
T Consensus 99 ~~l~~~l~~~~it~ia~e~vp---r~sraq~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~ 175 (509)
T PRK09424 99 PELLEKLAARGVTVLAMDAVP---RISRAQSLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGV 175 (509)
T ss_pred HHHHHHHHHcCCEEEEeeccc---ccccCCCcccccchhhhhHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcH
Confidence 678888888887533222222 11111 11222222233444444433322221 123456899999999998
Q ss_pred chH-HHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 345 GGK-TLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 345 G~k-T~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
=|. ++..|..++ ..|+++|.++.+++.+++
T Consensus 176 iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 176 AGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 664 556666664 489999999999987665
No 361
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=60.89 E-value=19 Score=29.89 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=33.3
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDA 412 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~ 412 (451)
+|| +|||.|..|..+++. +++.++..|++ +++......++... ...+|+|++-|
T Consensus 2 ~Il-l~C~~GaSSs~la~k-------------------m~~~a~~~gi~--~~i~a~~~~e~~~~-~~~~Dvill~P 55 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANA-------------------LNKGAKERGVP--LEAAAGAYGSHYDM-IPDYDLVILAP 55 (99)
T ss_pred EEE-EECCCCCCHHHHHHH-------------------HHHHHHHCCCc--EEEEEeeHHHHHHh-ccCCCEEEEcC
Confidence 355 566888777777664 44556667775 55555555555432 34578887643
No 362
>PRK06940 short chain dehydrogenase; Provisional
Probab=60.77 E-value=33 Score=33.23 Aligned_cols=75 Identities=17% Similarity=0.107 Sum_probs=51.9
Q ss_pred eEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CCCCcCE
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVKCDK 407 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~~~fD~ 407 (451)
.+|=.|+ |+.+.++++.+..+..|+.+|.++..++.+.+.++..|. .+.++..|..+.... ..+.+|.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4554554 689999998887656899999998888777666665553 366778887653210 1246899
Q ss_pred EEEcCCC
Q 012998 408 VLLDAPC 414 (451)
Q Consensus 408 VlvD~PC 414 (451)
++..+-.
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9887643
No 363
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=60.71 E-value=4.2 Score=42.97 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc----cc--CCCCcCE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA----DN--STVKCDK 407 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~----~~--~~~~fD~ 407 (451)
+..+|=+|-|.|+....+-..++ ...|+|+++++.+++.+.+++....-. +..++-.|+..+. +. .+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45677788888998887765554 479999999999999999998665543 2344556665442 11 2457999
Q ss_pred EEEcCCCCCc
Q 012998 408 VLLDAPCSGL 417 (451)
Q Consensus 408 VlvD~PCSg~ 417 (451)
+++|+--+-+
T Consensus 374 l~~dvds~d~ 383 (482)
T KOG2352|consen 374 LMVDVDSKDS 383 (482)
T ss_pred EEEECCCCCc
Confidence 9999754443
No 364
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=60.60 E-value=14 Score=35.66 Aligned_cols=93 Identities=13% Similarity=0.276 Sum_probs=54.7
Q ss_pred CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc--ccCCCCcCEEEEcC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA--DNSTVKCDKVLLDA 412 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~--~~~~~~fD~VlvD~ 412 (451)
-+||++.+|-||.--.+-..--+.-.|-|+|++.-.-+.-..|- + .+-+ .+.|...+. ....-.+|.++.-|
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~---h-~~L~--k~~~I~~lt~kefd~l~~~m~lMSP 77 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY---H-SNLV--KTRNIQSLTVKEFDKLQANMLLMSP 77 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc---c-cchh--hccccceeeHhhhhhcccceEeeCC
Confidence 37899999999854333222224457889999987766655441 1 1101 111221111 11123589999999
Q ss_pred CCCCccccccCCcccccCCHh
Q 012998 413 PCSGLGVLSKRADLRWNRRLE 433 (451)
Q Consensus 413 PCSg~G~lrr~pd~~~~~~~~ 433 (451)
||--.--+.+..|+.-.++..
T Consensus 78 pCQPfTRiG~q~D~~D~Rs~a 98 (338)
T KOG0919|consen 78 PCQPFTRIGLQRDTEDKRSDA 98 (338)
T ss_pred CCCchhhhcccccccCchhHH
Confidence 998887777777776555533
No 365
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=60.59 E-value=54 Score=28.34 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 331 ~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
--.+.+||=+|||-=+.+...+-.-.+...|+-+..+.++++.+.+.+ +-.+ +.++..+ ++.. ....+|+|+.
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~-~~~~~~~--~~~~-~~~~~DivI~ 81 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVN-IEAIPLE--DLEE-ALQEADIVIN 81 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCS-EEEEEGG--GHCH-HHHTESEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---Cccc-cceeeHH--HHHH-HHhhCCeEEE
Confidence 335889999999644433322222223456999999999888877777 2222 4443322 2211 1145898887
Q ss_pred cCCCCCccc
Q 012998 411 DAPCSGLGV 419 (451)
Q Consensus 411 D~PCSg~G~ 419 (451)
||+.|.
T Consensus 82 ---aT~~~~ 87 (135)
T PF01488_consen 82 ---ATPSGM 87 (135)
T ss_dssp ----SSTTS
T ss_pred ---ecCCCC
Confidence 444443
No 366
>PRK07904 short chain dehydrogenase; Provisional
Probab=60.50 E-value=28 Score=33.31 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=52.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC--ceEEEEeCCHHH-HHHHHHHHHHcCCCceEEEEcCcccccccc--------C
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGR-LRILNETAKLHQVNSVIRTIHADLRTFADN--------S 401 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~--g~V~AvDi~~~r-l~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~ 401 (451)
.+.+||-.|| +|+.+..++..+-.. ..|++++.++.. ++.+.+.++..+..+ ++++..|..+.... .
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~-v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASS-VEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCc-eEEEEecCCChHHHHHHHHHHHh
Confidence 4567777776 678899888765332 489999998875 777777777666433 78888887653310 0
Q ss_pred CCCcCEEEEc
Q 012998 402 TVKCDKVLLD 411 (451)
Q Consensus 402 ~~~fD~VlvD 411 (451)
.+..|.++..
T Consensus 85 ~g~id~li~~ 94 (253)
T PRK07904 85 GGDVDVAIVA 94 (253)
T ss_pred cCCCCEEEEe
Confidence 1468988873
No 367
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.35 E-value=45 Score=30.98 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=51.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||-.|++ |+.+..+++.+.. +..|++++.++..+..+.+.+...+ .+.++.+|..+.... ..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 36788888875 7788888876643 3489999999988877655554433 367778887653211 11
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.|+..+.
T Consensus 80 ~~id~ii~~ag 90 (238)
T PRK05786 80 NAIDGLVVTVG 90 (238)
T ss_pred CCCCEEEEcCC
Confidence 35788887653
No 368
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=60.18 E-value=37 Score=33.98 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=34.1
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 330 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 330 ~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
...+|++||=.|||+ |..++++|..++ ...|+++|.++++++.++ .+|.+.
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 455799999887642 223445555543 247999999999988765 467653
No 369
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=60.11 E-value=25 Score=34.74 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=48.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVL 409 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~Vl 409 (451)
.|.+||-.| |+|+.+.+++..+-.. ..|+++..+..............+....++++.+|..+.... .-..+|.|+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 356777776 6789999998766544 478777777655443322222223323478888998765321 113578888
Q ss_pred EcC
Q 012998 410 LDA 412 (451)
Q Consensus 410 vD~ 412 (451)
.-+
T Consensus 83 h~A 85 (325)
T PLN02989 83 HTA 85 (325)
T ss_pred EeC
Confidence 765
No 370
>PRK06197 short chain dehydrogenase; Provisional
Probab=60.04 E-value=1.3e+02 Score=29.44 Aligned_cols=80 Identities=16% Similarity=0.094 Sum_probs=52.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.| |+|+.+.+++..+... .+|+.++.+....+.+.+.+....-...+.++..|..+.... ..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 466777555 5678888888766543 488899999888776666555432122367788888764311 12
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.|+..+-
T Consensus 94 ~~iD~li~nAg 104 (306)
T PRK06197 94 PRIDLLINNAG 104 (306)
T ss_pred CCCCEEEECCc
Confidence 46899998764
No 371
>PRK09186 flagellin modification protein A; Provisional
Probab=59.79 E-value=91 Score=29.27 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHH-cCCCceEEEEcCcccccccc---------CC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKL-HQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~-~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
+.+||=.|+ +|+.+.+++..+... .+|+.++.++..++.+.+.+.. .+-. .+.++.+|..+.... ..
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSK-KLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCC-ceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 556776666 577888888776543 5899999998888777666643 2322 356667887653210 11
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+..|.|+..+
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 4589999877
No 372
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.40 E-value=38 Score=33.87 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=33.7
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCC
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~ 384 (451)
...++|++||=.|+|+ |..+.++|..++ ...|++++.++.+++.++ .+|.+
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~Ga~ 207 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAK----SLGAM 207 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCc
Confidence 4567899999987643 223445566553 235899999999888653 45654
No 373
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=58.80 E-value=49 Score=32.62 Aligned_cols=44 Identities=11% Similarity=-0.117 Sum_probs=36.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAK 379 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~ 379 (451)
...+||--|||-|..+..+|.+ +-.+.|+|.|--|+-...-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999987 4689999999999876665444
No 374
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=58.64 E-value=15 Score=31.82 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=28.6
Q ss_pred EEEEcCccccccccCCCCcCEEEEcCCCCCccccccCCcccccCCHhHHHHHHH
Q 012998 387 IRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKI 440 (451)
Q Consensus 387 I~~~~~Da~~~~~~~~~~fD~VlvD~PCSg~G~lrr~pd~~~~~~~~~l~~l~~ 440 (451)
+++..+|+++........||+|++|+-... ++||+ |+.+-+..|..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~-----~nPel---Ws~e~~~~l~~ 78 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDGFSPA-----KNPEL---WSEELFKKLAR 78 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-SS-TT-----TSGGG---SSHHHHHHHHH
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecCCCCc-----CCccc---CCHHHHHHHHH
Confidence 567889998765555578999999974433 78884 45566655543
No 375
>PRK09135 pteridine reductase; Provisional
Probab=57.89 E-value=96 Score=28.82 Aligned_cols=79 Identities=11% Similarity=-0.031 Sum_probs=50.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCC-HHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------C
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~-~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~ 401 (451)
.+.+||-.|+ +|+.+.+++..+-. +..|++++.+ ...++.+...+...+-. .+.++.+|..+.... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPG-SAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCC-ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3567888886 57888888876643 4589999875 45555555555444332 367788888654311 0
Q ss_pred CCCcCEEEEcCC
Q 012998 402 TVKCDKVLLDAP 413 (451)
Q Consensus 402 ~~~fD~VlvD~P 413 (451)
.+..|.|+.-+.
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 135799988664
No 376
>PRK07326 short chain dehydrogenase; Provisional
Probab=57.61 E-value=33 Score=31.88 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=51.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+..||=.| |+|+.+..++..+.. +..|++++.++..+..+.+.+... ..+.++.+|..+.... ..
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 356788777 478888888776643 348999999998877776665443 2367788887653210 01
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+.+|.|+..+
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 3689888765
No 377
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=57.41 E-value=93 Score=31.23 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCEEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~Vlv 410 (451)
+++||=.|+ +|..+.++++.+-..| .|++++.+......+...+.. + ..++++.+|..+.... ....+|.|+.
T Consensus 10 ~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 85 (353)
T PLN02896 10 TGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-G--DRLRLFRADLQEEGSFDEAVKGCDGVFH 85 (353)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-C--CeEEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 568887775 6899999988775444 799888876654443333321 2 2477888888764321 1135798888
Q ss_pred cCCCCCcc
Q 012998 411 DAPCSGLG 418 (451)
Q Consensus 411 D~PCSg~G 418 (451)
-+..++.+
T Consensus 86 ~A~~~~~~ 93 (353)
T PLN02896 86 VAASMEFD 93 (353)
T ss_pred CCccccCC
Confidence 77665443
No 378
>PRK08339 short chain dehydrogenase; Provisional
Probab=56.90 E-value=64 Score=30.93 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=50.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CCCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~~~ 404 (451)
|..+|=.|++ |+.+..++..+- .+.+|+.++.++..++.+.+.+....-. .+.++..|+.+.... ..+.
T Consensus 8 ~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNV-DVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 6677766655 567777776654 3458999999999888877776543212 367788887764211 1246
Q ss_pred cCEEEEcC
Q 012998 405 CDKVLLDA 412 (451)
Q Consensus 405 fD~VlvD~ 412 (451)
.|.++..+
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 88888754
No 379
>PRK09291 short chain dehydrogenase; Provisional
Probab=56.87 E-value=56 Score=30.79 Aligned_cols=76 Identities=21% Similarity=0.088 Sum_probs=51.9
Q ss_pred CeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---cCCCCcCEEEE
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVLL 410 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---~~~~~fD~Vlv 410 (451)
.+||=.|+ +|+.+..++..+.. +..|++++.++..+..+.+.....+.. +.++.+|..+... ......|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLA--LRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCc--ceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 35666665 67788888766543 458999999988887777766666643 6777888765422 12347899998
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
.+-
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 653
No 380
>PRK08114 cystathionine beta-lyase; Provisional
Probab=56.83 E-value=38 Score=35.29 Aligned_cols=89 Identities=9% Similarity=-0.050 Sum_probs=60.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEe-CCHHHHHHHHHHHHHcCCCceEEEEc-CccccccccCCCCcCE
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID-INKGRLRILNETAKLHQVNSVIRTIH-ADLRTFADNSTVKCDK 407 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvD-i~~~rl~~l~~~~~~~g~~~~I~~~~-~Da~~~~~~~~~~fD~ 407 (451)
.+..|+..+-..+|.+..+..+..++.++.+|++.+ ....-...+++.+++.|++ +.++. .|...+.......-.+
T Consensus 73 ~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~~~l~~~l~~~Trl 150 (395)
T PRK08114 73 ELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIGADIAKLIQPNTKV 150 (395)
T ss_pred HHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCHHHHHHhcCCCceE
Confidence 345677888888888888877777777767777754 4445566667778888885 55543 3433333222334579
Q ss_pred EEEcCCCCCcccc
Q 012998 408 VLLDAPCSGLGVL 420 (451)
Q Consensus 408 VlvD~PCSg~G~l 420 (451)
|+++-|++-+|.+
T Consensus 151 V~~EtpsNp~~~v 163 (395)
T PRK08114 151 VFLESPGSITMEV 163 (395)
T ss_pred EEEECCCCCCCEe
Confidence 9999999888764
No 381
>PRK07109 short chain dehydrogenase; Provisional
Probab=56.38 E-value=70 Score=32.12 Aligned_cols=80 Identities=15% Similarity=0.040 Sum_probs=55.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+..||=.| |+|+.+..++..+. .+.+|+.++.++..++.+.+.++..|.. +.++.+|..+.... ..
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~--~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGE--ALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEEecCCCHHHHHHHHHHHHHHC
Confidence 355676666 45677887776654 3358999999999998888888777753 67778887654211 12
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+.+|.++..+-.+
T Consensus 84 g~iD~lInnAg~~ 96 (334)
T PRK07109 84 GPIDTWVNNAMVT 96 (334)
T ss_pred CCCCEEEECCCcC
Confidence 4789998876543
No 382
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=55.87 E-value=14 Score=35.61 Aligned_cols=47 Identities=17% Similarity=0.007 Sum_probs=38.7
Q ss_pred CeEEeecCCCchHHHHHHHHcCCC-------ceEEEEeCCHHHHHHHHHHHHHc
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQ-------GLVYAIDINKGRLRILNETAKLH 381 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~-------g~V~AvDi~~~rl~~l~~~~~~~ 381 (451)
-+|+++|+|.|..+..+...+... .+++-||+|+...+.-++.+...
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 599999999999999998877633 58999999999999888888763
No 383
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=55.58 E-value=13 Score=34.80 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=41.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~---g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
..+.|++.|+.-||.++..|..|-.. .+|+++|++-.-+...... .++ |.++.++..+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~-i~f~egss~dp 130 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPD-ILFIEGSSTDP 130 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCC-eEEEeCCCCCH
Confidence 35699999999999999998876433 4899999986654432221 333 77777776553
No 384
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=55.50 E-value=1.3e+02 Score=29.53 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=61.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEcCcccccccc---------C
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN---------S 401 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~-g~~~~I~~~~~Da~~~~~~---------~ 401 (451)
.+.++|=-|| ++|.+..+|..+... ..|+-+-.+.++|+.+.+.++.. |+. +.++..|..+.... .
T Consensus 5 ~~~~~lITGA-SsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~--v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 5 KGKTALITGA-SSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVE--VEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCce--EEEEECcCCChhHHHHHHHHHHhc
Confidence 4556666665 556778787776544 57999999999999999998864 443 78889997764321 0
Q ss_pred CCCcCEEEEcCCCCCccccccCCccccc
Q 012998 402 TVKCDKVLLDAPCSGLGVLSKRADLRWN 429 (451)
Q Consensus 402 ~~~fD~VlvD~PCSg~G~lrr~pd~~~~ 429 (451)
...+|+.+- |.|.|+...--|..|.
T Consensus 82 ~~~IdvLVN---NAG~g~~g~f~~~~~~ 106 (265)
T COG0300 82 GGPIDVLVN---NAGFGTFGPFLELSLD 106 (265)
T ss_pred CCcccEEEE---CCCcCCccchhhCChH
Confidence 135777776 5567765543444443
No 385
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=55.47 E-value=16 Score=34.91 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=27.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~ 375 (451)
+..+++|..||+|..++.+.. ....|+.+|+++.-....+
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHHHHH
Confidence 678999999999999887765 3578999999987554433
No 386
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=55.28 E-value=1.6e+02 Score=27.25 Aligned_cols=80 Identities=19% Similarity=0.084 Sum_probs=53.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+.+++..+.. +..|++++.++..+....+.+...+. .+.++.+|..+.... ..+
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567886664 67788877765543 35899999998887777666665543 377888887653210 013
Q ss_pred CcCEEEEcCCCCC
Q 012998 404 KCDKVLLDAPCSG 416 (451)
Q Consensus 404 ~fD~VlvD~PCSg 416 (451)
.+|.|+..+...+
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 6899988775443
No 387
>PLN02253 xanthoxin dehydrogenase
Probab=54.90 E-value=1.1e+02 Score=29.38 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=49.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.+||=.| |+|+.+..++..+. .+.+|+.+|.++...+.+.+.+. ....+.++..|..+.... ..+
T Consensus 18 ~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g 93 (280)
T PLN02253 18 GKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVDKFG 93 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 56788777 45778888887664 34589999998877665554442 223477888888764211 114
Q ss_pred CcCEEEEcCC
Q 012998 404 KCDKVLLDAP 413 (451)
Q Consensus 404 ~fD~VlvD~P 413 (451)
..|.|+..+-
T Consensus 94 ~id~li~~Ag 103 (280)
T PLN02253 94 TLDIMVNNAG 103 (280)
T ss_pred CCCEEEECCC
Confidence 6899888663
No 388
>PRK05876 short chain dehydrogenase; Provisional
Probab=54.79 E-value=59 Score=31.49 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=53.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.|++ |+.+..++..+... ..|+.+|.++..++.+.+.++..|. .+.++..|..+.... ..
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 36678866664 67788887766433 4799999999888877776665554 367778887654311 12
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+..|.++..+--
T Consensus 82 g~id~li~nAg~ 93 (275)
T PRK05876 82 GHVDVVFSNAGI 93 (275)
T ss_pred CCCCEEEECCCc
Confidence 467999987644
No 389
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=54.66 E-value=74 Score=31.70 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=47.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccC--CCCcCEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ---GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNS--TVKCDKV 408 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~---g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~--~~~fD~V 408 (451)
|.+||=.|+ +|+.+.+++..+-.. ..|+++|.+......+.+.+ +.. .+.++.+|..+..... -..+|.|
T Consensus 4 ~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~---~~~-~~~~v~~Dl~d~~~l~~~~~~iD~V 78 (324)
T TIGR03589 4 NKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF---PAP-CLRFFIGDVRDKERLTRALRGVDYV 78 (324)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh---CCC-cEEEEEccCCCHHHHHHHHhcCCEE
Confidence 567886665 689999998876433 47999988765543333222 212 3778889987753211 1348999
Q ss_pred EEcCC
Q 012998 409 LLDAP 413 (451)
Q Consensus 409 lvD~P 413 (451)
+.-+-
T Consensus 79 ih~Ag 83 (324)
T TIGR03589 79 VHAAA 83 (324)
T ss_pred EECcc
Confidence 87553
No 390
>PRK06196 oxidoreductase; Provisional
Probab=54.64 E-value=42 Score=33.24 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=50.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.| |+|+.+.+++..+... ..|++++.++..++.+.+.+. + +.++.+|..+.... ..
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~-----~-v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID-----G-VEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----h-CeEEEccCCCHHHHHHHHHHHHhcC
Confidence 356777777 4578888888766533 489999999887766554442 1 55677887754311 12
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+..|.|+..+...
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
No 391
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=54.63 E-value=39 Score=33.17 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=42.5
Q ss_pred hhhhhCCCCCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc
Q 012998 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (451)
Q Consensus 325 ~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~ 395 (451)
+-++-.++||+.||--. +.||..+.+.+++.- ..++++.--+.++.+.+++| |.+..|.....|..
T Consensus 138 l~e~y~vkpGhtVlvha-AAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v 204 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLVHA-AAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYV 204 (336)
T ss_pred HHHhcCCCCCCEEEEEe-ccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CCcceeeccchhHH
Confidence 33455789999988544 445556655554432 35788888888888877664 66655555566654
No 392
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.44 E-value=38 Score=33.26 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=37.2
Q ss_pred hhCCCCCCeEEeecC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 328 ~l~~~~g~~VLDlca--gpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
...+++|++||=.|+ +.|..++++|..++ .+|++++.++++.+.+++ +|.+.
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCE
Confidence 455788999987764 45556667777753 579999999988777654 57654
No 393
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=53.99 E-value=46 Score=31.33 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=53.5
Q ss_pred EEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCCCcC
Q 012998 337 IVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKCD 406 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~~fD 406 (451)
+|=.| |+|+.+.+++..+. .+.+|+.++.+...++.+.+.+...+. .+.++.+|..+.... ..+..|
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44445 46788888776653 335899999998888777777766654 367788887653210 124679
Q ss_pred EEEEcCCCCCcccc
Q 012998 407 KVLLDAPCSGLGVL 420 (451)
Q Consensus 407 ~VlvD~PCSg~G~l 420 (451)
.|+..+.....|.+
T Consensus 80 ~vi~~ag~~~~~~~ 93 (254)
T TIGR02415 80 VMVNNAGVAPITPI 93 (254)
T ss_pred EEEECCCcCCCCCc
Confidence 99998766554443
No 394
>PRK07454 short chain dehydrogenase; Provisional
Probab=53.95 E-value=58 Score=30.44 Aligned_cols=76 Identities=13% Similarity=-0.031 Sum_probs=51.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.++|=.|+ +|+.+..++..+-.. ..|++++.++.....+.+.++..+. .+.++.+|..+.... ..+
T Consensus 6 ~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV--KAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456777774 688888888766533 4899999999888777776665443 367788898764311 013
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
..|.|+..+
T Consensus 83 ~id~lv~~a 91 (241)
T PRK07454 83 CPDVLINNA 91 (241)
T ss_pred CCCEEEECC
Confidence 578888744
No 395
>PRK08267 short chain dehydrogenase; Provisional
Probab=53.44 E-value=56 Score=30.97 Aligned_cols=75 Identities=23% Similarity=0.059 Sum_probs=49.1
Q ss_pred eEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc----------CCCC
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN----------STVK 404 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~----------~~~~ 404 (451)
+||-.|+ +|+.+..++..+... .+|+.++.++..++.+.+.+. + ..+.++.+|+.+.... ..++
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4555554 477888887765543 489999999888777655543 2 2377888888764310 0356
Q ss_pred cCEEEEcCCCC
Q 012998 405 CDKVLLDAPCS 415 (451)
Q Consensus 405 fD~VlvD~PCS 415 (451)
+|.|+..+-..
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89999865443
No 396
>KOG2425 consensus Nuclear protein involved in cell morphogenesis and cell surface growth [General function prediction only]
Probab=52.78 E-value=55 Score=34.77 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHhhccCCCCCCCcCcCCchHHHHHHHHhhCChHHHHHH
Q 012998 188 GNLVNGILRKLVLLKDNNSLPLPKLEGNDRAQARALATIYSHPVWMVRR 236 (451)
Q Consensus 188 ~~fVNaVLr~i~r~~~~~~~~~~~~~~~~~~~~~~la~~~s~P~wl~~~ 236 (451)
.+||||++....+.... +| ..-+|...++|.|||+-
T Consensus 106 ~RfVNglid~tqqsq~a----Vp---------la~lA~~IgiP~wfVDL 141 (599)
T KOG2425|consen 106 VRFVNGLIDPTQQSQAA----VP---------LACLAQEIGIPDWFVDL 141 (599)
T ss_pred HHHHHhccCHHhhhhhc----cc---------HHHHHHHcCCcHHHHHh
Confidence 47999999987664332 11 23477888999999985
No 397
>PRK05717 oxidoreductase; Validated
Probab=52.76 E-value=53 Score=31.12 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=50.0
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.+||=.|+ +|+.+.+++..+... .+|+.+|.++.....+.+. .+ +.+.++.+|..+.... ..+
T Consensus 10 ~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 83 (255)
T PRK05717 10 GRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKA---LG--ENAWFIAMDVADEAQVAAGVAEVLGQFG 83 (255)
T ss_pred CCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH---cC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 567886665 578888888777533 5899999988766554332 23 2367788888764211 124
Q ss_pred CcCEEEEcCCCC
Q 012998 404 KCDKVLLDAPCS 415 (451)
Q Consensus 404 ~fD~VlvD~PCS 415 (451)
.+|.|+..+...
T Consensus 84 ~id~li~~ag~~ 95 (255)
T PRK05717 84 RLDALVCNAAIA 95 (255)
T ss_pred CCCEEEECCCcc
Confidence 689999987554
No 398
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=52.73 E-value=11 Score=37.11 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~ 372 (451)
.|.+|||+|||+|-..+.+... +...+...|.+..-++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 5889999999999998877654 3468899999877764
No 399
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.71 E-value=30 Score=35.96 Aligned_cols=72 Identities=22% Similarity=0.181 Sum_probs=49.1
Q ss_pred CeEEeecCCCchHHHHHHHHcC-C-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--CCCCcCEEEE
Q 012998 335 QSIVDCCAAPGGKTLYMASCLS-G-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--STVKCDKVLL 410 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~-~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--~~~~fD~Vlv 410 (451)
++||=+|| |+.+..+|..+. + .+.|+..|.+...+..+...... .+++...|+.+.... .-..+|+|+.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEE
Confidence 47888999 666666665532 2 26999999999998887665432 377788888765432 1245688887
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
=+|
T Consensus 75 ~~p 77 (389)
T COG1748 75 AAP 77 (389)
T ss_pred eCC
Confidence 655
No 400
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=52.68 E-value=48 Score=32.89 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=34.4
Q ss_pred hhhCCCCCCeEEeecCCCchHH---HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 327 AVVDPQPGQSIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagpG~kT---~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+.+++|++||=.|+ |+.+ .++|..++ ...|+++|.++.+++.++ .+|.+.
T Consensus 157 ~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G-~~~vi~~~~~~~~~~~~~----~~ga~~ 211 (339)
T cd08239 157 RRVGVSGRDTVLVVGA--GPVGLGALMLARALG-AEDVIGVDPSPERLELAK----ALGADF 211 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE
Confidence 3456778999998865 4444 44555543 224999999999887664 356643
No 401
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=52.56 E-value=45 Score=33.87 Aligned_cols=52 Identities=25% Similarity=0.315 Sum_probs=34.8
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|+|+ |..+.++|..++ ...|+++|.++.+++.+++ +|.+.
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~ 239 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAG-ASQVVAVDLNEDKLALARE----LGATA 239 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----cCCce
Confidence 4578899999987643 223444555542 2369999999999887653 57643
No 402
>PRK07340 ornithine cyclodeaminase; Validated
Probab=52.43 E-value=92 Score=31.07 Aligned_cols=86 Identities=10% Similarity=0.012 Sum_probs=57.2
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC-LSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~-~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~ 400 (451)
|.+++..|......+|+-+|||.=+.+...+-. ..+..+|+..+.++++.+.+.+.++..++. +. ..|..+..
T Consensus 113 sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~--~~--~~~~~~av-- 186 (304)
T PRK07340 113 SLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT--AE--PLDGEAIP-- 186 (304)
T ss_pred HHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe--eE--ECCHHHHh--
Confidence 666777777777789999999876655544332 234458999999999999888888765443 22 33433322
Q ss_pred CCCCcCEEEEcCCCC
Q 012998 401 STVKCDKVLLDAPCS 415 (451)
Q Consensus 401 ~~~~fD~VlvD~PCS 415 (451)
...|+|+.=.|++
T Consensus 187 --~~aDiVitaT~s~ 199 (304)
T PRK07340 187 --EAVDLVVTATTSR 199 (304)
T ss_pred --hcCCEEEEccCCC
Confidence 3578888755543
No 403
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=51.94 E-value=72 Score=31.29 Aligned_cols=46 Identities=17% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKL 380 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~--g~V~AvDi~~~rl~~l~~~~~~ 380 (451)
.+.+||=+|+ |+.+..++..+... .+|+.++.+.++.+.+.+.+..
T Consensus 122 ~~k~vlVlGa--Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~ 169 (278)
T PRK00258 122 KGKRILILGA--GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGA 169 (278)
T ss_pred CCCEEEEEcC--cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhh
Confidence 4678988887 56666666555433 4899999999988877776653
No 404
>PRK06720 hypothetical protein; Provisional
Probab=51.64 E-value=88 Score=28.24 Aligned_cols=78 Identities=15% Similarity=0.052 Sum_probs=49.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|..+|-.|++ |+.+..++..+. .+..|+.+|.+...++...+.+...+.. +.++..|..+.... ..
T Consensus 15 ~gk~~lVTGa~-~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~--~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 15 AGKVAIVTGGG-IGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGE--ALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CCCEEEEecCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCc--EEEEEccCCCHHHHHHHHHHHHHHc
Confidence 36677777765 456666665443 3468999999988877766666555532 45667786543210 12
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+..|.++.++.
T Consensus 92 G~iDilVnnAG 102 (169)
T PRK06720 92 SRIDMLFQNAG 102 (169)
T ss_pred CCCCEEEECCC
Confidence 46899998764
No 405
>PLN02740 Alcohol dehydrogenase-like
Probab=51.55 E-value=51 Score=33.68 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=34.7
Q ss_pred hCCCCCCeEEeecCCCchHHH---HHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCAAPGGKTL---YMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~---~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|+ |+... ++|..++ ...|+++|.++.+++.+++ +|.+.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcE
Confidence 46788999999976 44444 4444432 2369999999999887754 56643
No 406
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=51.54 E-value=1e+02 Score=29.11 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=55.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+..+|=.| |+|+.+..++..+... ..|+.++.++..+..+.+.++..+. .+.++..|..+.... ..
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 356777777 4567888887766543 4899999999888877777766553 366777887654210 12
Q ss_pred CCcCEEEEcCCCCC
Q 012998 403 VKCDKVLLDAPCSG 416 (451)
Q Consensus 403 ~~fD~VlvD~PCSg 416 (451)
+.+|.|+..+-...
T Consensus 85 ~~id~vi~~ag~~~ 98 (254)
T PRK08085 85 GPIDVLINNAGIQR 98 (254)
T ss_pred CCCCEEEECCCcCC
Confidence 46899998775543
No 407
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=51.29 E-value=17 Score=30.64 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=42.1
Q ss_pred CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc-ccccCC-CCcCEEEEcCCCCCcc
Q 012998 343 APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT-FADNST-VKCDKVLLDAPCSGLG 418 (451)
Q Consensus 343 gpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~-~~~~~~-~~fD~VlvD~PCSg~G 418 (451)
|.|..++++|..++ .+|+++|.++.+++.++ ++|.+..+.....|..+ +..... ..+|+|+- |+|.+
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid---~~g~~ 69 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGADHVIDYSDDDFVEQIRELTGGRGVDVVID---CVGSG 69 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTESEEEETTTSSHHHHHHHHTTTSSEEEEEE---SSSSH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcccccccccccccccccccccccccceEEEE---ecCcH
Confidence 35788999999876 89999999999988765 46765322211222221 111122 36888875 66643
No 408
>PRK05854 short chain dehydrogenase; Provisional
Probab=51.29 E-value=96 Score=30.73 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=52.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.+||=.|+ +||.+..++..+- .+.+|+.+..+...++.+.+.+....-...+.++..|..+.... ..+
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 566665555 5778888877654 34589999999988877776665432222377888888664311 124
Q ss_pred CcCEEEEcCC
Q 012998 404 KCDKVLLDAP 413 (451)
Q Consensus 404 ~fD~VlvD~P 413 (451)
..|.++.++-
T Consensus 93 ~iD~li~nAG 102 (313)
T PRK05854 93 PIHLLINNAG 102 (313)
T ss_pred CccEEEECCc
Confidence 6899998763
No 409
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=50.60 E-value=41 Score=34.20 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=36.0
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|||+ |..++++|..++ ...|+++|.++++++.+++ +|.+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATD 233 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCe
Confidence 4578899999997643 334455666543 2379999999999887744 56643
No 410
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=50.25 E-value=92 Score=29.06 Aligned_cols=80 Identities=11% Similarity=0.092 Sum_probs=54.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+..||=.|+ +|+.+..++..+-..| .|+.++.+......+...+...+. .+.++.+|..+.... ..+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 567777775 5778888877655444 899999999888877777765543 377788887653210 013
Q ss_pred CcCEEEEcCCCCC
Q 012998 404 KCDKVLLDAPCSG 416 (451)
Q Consensus 404 ~fD~VlvD~PCSg 416 (451)
..|.|+..+....
T Consensus 80 ~~d~vi~~ag~~~ 92 (250)
T TIGR03206 80 PVDVLVNNAGWDK 92 (250)
T ss_pred CCCEEEECCCCCC
Confidence 5799988775543
No 411
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=50.19 E-value=77 Score=27.48 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=43.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ--GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLL 410 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~--g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vlv 410 (451)
.+.+|+-+|+ |+.+..++..+... ..|+.+|.++.+.+.+.+.+...++ .....|.... ....|+|++
T Consensus 18 ~~~~i~iiG~--G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGA--GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI----AIAYLDLEEL----LAEADLIIN 87 (155)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccc----ceeecchhhc----cccCCEEEe
Confidence 4678888887 56666666554433 4699999998887766555432211 1111232221 245788888
Q ss_pred cCCCCC
Q 012998 411 DAPCSG 416 (451)
Q Consensus 411 D~PCSg 416 (451)
-.|-+.
T Consensus 88 ~~~~~~ 93 (155)
T cd01065 88 TTPVGM 93 (155)
T ss_pred CcCCCC
Confidence 655443
No 412
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=50.01 E-value=27 Score=34.88 Aligned_cols=79 Identities=9% Similarity=0.093 Sum_probs=60.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcC--CC-ceEEEEcCccccccccC-CCCcCEE
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQ--VN-SVIRTIHADLRTFADNS-TVKCDKV 408 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g--~~-~~I~~~~~Da~~~~~~~-~~~fD~V 408 (451)
..+.||=+|-|-|+.-...+.. ..-+.|.-+|++..-++.-++-+..+- ++ .+|.+.-+|+..+.... .++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3468999999999987666554 334689999999999998888877643 32 25888889998876544 5799999
Q ss_pred EEcC
Q 012998 409 LLDA 412 (451)
Q Consensus 409 lvD~ 412 (451)
++|-
T Consensus 200 i~ds 203 (337)
T KOG1562|consen 200 ITDS 203 (337)
T ss_pred EEec
Confidence 9984
No 413
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=49.86 E-value=58 Score=32.14 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=37.4
Q ss_pred hhCCCCCCeEEeecC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 328 VVDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 328 ~l~~~~g~~VLDlca--gpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
...+++|++||=.|+ |.|..++++|..++ .+|++++.++++.+.++ .+|.+.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCE
Confidence 446788999998875 35566677777653 47999999988877664 367654
No 414
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.71 E-value=88 Score=29.43 Aligned_cols=77 Identities=13% Similarity=0.013 Sum_probs=52.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.+.+||=.|+ +|+.+.+++..+-. +..|+.++.++..++.+...+...+. ++.++..|..+.... ..
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 3567776665 66788887776543 35899999999888877777766553 367788887653210 11
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+..|.|+..+
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4689998866
No 415
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.26 E-value=57 Score=32.46 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=35.6
Q ss_pred hhhCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
....+++|++||-.|+|. |..+.++|..++ ...|++++.++.+.+.+++ +|.+.
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~ 210 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFG-ATKVVVTDIDPSRLEFAKE----LGATH 210 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCcE
Confidence 455678899998876543 445566666643 1238999988888776644 36553
No 416
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.11 E-value=83 Score=29.36 Aligned_cols=78 Identities=17% Similarity=0.077 Sum_probs=51.6
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+.+++..+-. +.+|++++.++..+..+...+.. + ..+.++.+|..+.... ..+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 456666655 46777777765543 34899999999888777666554 3 2377888887654321 123
Q ss_pred CcCEEEEcCCCC
Q 012998 404 KCDKVLLDAPCS 415 (451)
Q Consensus 404 ~fD~VlvD~PCS 415 (451)
.+|.|+..+.+.
T Consensus 81 ~~d~vi~~ag~~ 92 (251)
T PRK07231 81 SVDILVNNAGTT 92 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999877543
No 417
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.09 E-value=76 Score=29.47 Aligned_cols=79 Identities=25% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEE-eCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAI-DINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~Av-Di~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
+.+||=.|+ +|+.+..++..+.. +.+|+.+ +.++..+..+.+.+...+. .+.++..|..+.... ..
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGG--DAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 346666664 68888888765543 3578888 9998888777777665443 377888898764311 01
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+.+|.|+..+...
T Consensus 82 ~~id~vi~~ag~~ 94 (247)
T PRK05565 82 GKIDILVNNAGIS 94 (247)
T ss_pred CCCCEEEECCCcC
Confidence 3689999876544
No 418
>PRK06141 ornithine cyclodeaminase; Validated
Probab=48.64 E-value=1.1e+02 Score=30.71 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=44.5
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHHHH-cCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASC-LSGQGLVYAIDINKGRLRILNETAKLHQV 383 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~-~~~~g~V~AvDi~~~rl~~l~~~~~~~g~ 383 (451)
|.+++..|......+|+-+|||.=+.....+-. +.+..+|+..+.++++.+.+.+.++..|.
T Consensus 113 sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 113 SALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 566677777777789999998766555533222 24446899999999999888888776554
No 419
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=48.49 E-value=1.3e+02 Score=28.10 Aligned_cols=78 Identities=15% Similarity=0.041 Sum_probs=52.2
Q ss_pred eEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccc-------c--cCCCCc
Q 012998 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFA-------D--NSTVKC 405 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~-------~--~~~~~f 405 (451)
+||=.| |+|+.+..++..+- .+..|++++.++...+.+...+...+. .+.++.+|..+.. . ......
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455555 56888888886653 335899999999888777776665553 3777888887543 1 012457
Q ss_pred CEEEEcCCCCC
Q 012998 406 DKVLLDAPCSG 416 (451)
Q Consensus 406 D~VlvD~PCSg 416 (451)
|.|+..+-.+.
T Consensus 80 d~vi~~a~~~~ 90 (255)
T TIGR01963 80 DILVNNAGIQH 90 (255)
T ss_pred CEEEECCCCCC
Confidence 99988775443
No 420
>PRK08263 short chain dehydrogenase; Provisional
Probab=48.29 E-value=67 Score=30.87 Aligned_cols=79 Identities=16% Similarity=0.014 Sum_probs=49.5
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+..||=.| |+|+.+.+++..+.. +..|++++.++..++.+.+.. + +.+.++..|+.+.... ..+
T Consensus 3 ~k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (275)
T PRK08263 3 EKVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---G--DRLLPLALDVTDRAAVFAAVETAVEHFG 76 (275)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---c--CCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 34667676 568888888876643 357999999988776654432 2 2356677887653211 014
Q ss_pred CcCEEEEcCCCCCcc
Q 012998 404 KCDKVLLDAPCSGLG 418 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G 418 (451)
.+|.|+..+-....+
T Consensus 77 ~~d~vi~~ag~~~~~ 91 (275)
T PRK08263 77 RLDIVVNNAGYGLFG 91 (275)
T ss_pred CCCEEEECCCCcccc
Confidence 679988866444333
No 421
>PLN02540 methylenetetrahydrofolate reductase
Probab=48.18 E-value=39 Score=36.84 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=51.6
Q ss_pred CCeEEeecCCCch----HHHHHHHHcCCC------ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccc
Q 012998 334 GQSIVDCCAAPGG----KTLYMASCLSGQ------GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRT 396 (451)
Q Consensus 334 g~~VLDlcagpG~----kT~~la~~~~~~------g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~ 396 (451)
+-..+|+.-|.|| +|+.++..+.+. .+++|.|.+...++..-..+..+|+.| |-.+.||...
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrN-ILALrGDpp~ 99 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQN-ILALRGDPPH 99 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCE-EEEECCCCCC
Confidence 3477889899887 688888777654 489999999999999999999999998 7788999653
No 422
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=47.67 E-value=98 Score=28.95 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=49.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.|++ |+.+..++..+-..| .|+.++.+. ...+.+.+...+. .+.++..|+.+.... ..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~--~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSE--PSETQQQVEALGR--RFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCch--HHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 36678877775 667888877665444 899998765 3344455555553 367788887764211 12
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+..|.|+..+-.
T Consensus 79 ~~~d~li~~ag~ 90 (248)
T TIGR01832 79 GHIDILVNNAGI 90 (248)
T ss_pred CCCCEEEECCCC
Confidence 468999887644
No 423
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=47.60 E-value=1.1e+02 Score=28.82 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=53.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+..++..+.. +..|+.++.+...++.+...++..+. .+.++..|+.+.... ..+
T Consensus 11 ~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 11 GKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 678888885 46677777765543 34788899998888877776666554 366778887754311 124
Q ss_pred CcCEEEEcCCCC
Q 012998 404 KCDKVLLDAPCS 415 (451)
Q Consensus 404 ~fD~VlvD~PCS 415 (451)
.+|.|+..+-..
T Consensus 88 ~~d~li~~ag~~ 99 (255)
T PRK06113 88 KVDILVNNAGGG 99 (255)
T ss_pred CCCEEEECCCCC
Confidence 689998876543
No 424
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=47.60 E-value=52 Score=30.83 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 331 ~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
..+|++||..|+|+ |..+.+++..++ .+|++++.++.+.+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 37899999999886 656667777653 689999999988776643
No 425
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=47.31 E-value=70 Score=29.58 Aligned_cols=78 Identities=18% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+.+++..+... ..|+.++.++...+.....++..+.. +.++.+|..+.... ..+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGE--ARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCc--eEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 457886665 788888888765433 47999999998887777666655543 66777887653210 013
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
..|.|+.-+-.
T Consensus 82 ~id~vi~~ag~ 92 (246)
T PRK05653 82 ALDILVNNAGI 92 (246)
T ss_pred CCCEEEECCCc
Confidence 56888875543
No 426
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.25 E-value=95 Score=29.04 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=51.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc-eEEE-EeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYA-IDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g-~V~A-vDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
|.+||=.|+ +|+.+.+++..+...| .|+. .+.+....+.+.+.++..+. .+.++.+|..+.... ..
T Consensus 4 ~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 4 GKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567776665 5888888887766544 6665 46677777766666665553 367778887654210 01
Q ss_pred CCcCEEEEcCCCC
Q 012998 403 VKCDKVLLDAPCS 415 (451)
Q Consensus 403 ~~fD~VlvD~PCS 415 (451)
+..|.|+..+..+
T Consensus 81 ~~id~vi~~ag~~ 93 (250)
T PRK08063 81 GRLDVFVNNAASG 93 (250)
T ss_pred CCCCEEEECCCCC
Confidence 3679999977543
No 427
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=46.82 E-value=76 Score=30.33 Aligned_cols=76 Identities=13% Similarity=0.031 Sum_probs=47.8
Q ss_pred CCCeEEeecCCC-chHHHHHHHHcCCC-ceEEEEeCCH---HHHHHHHHHHHHcCCCceEEEEcCccccccc--------
Q 012998 333 PGQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDINK---GRLRILNETAKLHQVNSVIRTIHADLRTFAD-------- 399 (451)
Q Consensus 333 ~g~~VLDlcagp-G~kT~~la~~~~~~-g~V~AvDi~~---~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~-------- 399 (451)
.|..+|=.|+++ +|.+..++..+... .+|+.++.+. ..++.+.+.+. + ..+.++..|+.+...
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--~--~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--G--QESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--C--CceEEEecCCCCHHHHHHHHHHH
Confidence 467899999884 88888888776543 4788776543 33443333221 2 236677888865421
Q ss_pred -cCCCCcCEEEEcC
Q 012998 400 -NSTVKCDKVLLDA 412 (451)
Q Consensus 400 -~~~~~fD~VlvD~ 412 (451)
...+++|.++..+
T Consensus 82 ~~~~g~ld~lv~na 95 (257)
T PRK08594 82 KEEVGVIHGVAHCI 95 (257)
T ss_pred HHhCCCccEEEECc
Confidence 0125789888766
No 428
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=46.79 E-value=65 Score=31.98 Aligned_cols=52 Identities=21% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCCCC--CeEEeecC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 330 DPQPG--QSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 330 ~~~~g--~~VLDlca--gpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
.+++| ++||=.|+ |.|..++++|..++ ..+|++++.++++.+.+++. +|.+.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G-~~~Vi~~~~s~~~~~~~~~~---lGa~~ 204 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLG-CSRVVGICGSDEKCQLLKSE---LGFDA 204 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHh---cCCcE
Confidence 45555 89988876 45666677777753 12799999998887766553 57654
No 429
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=46.37 E-value=96 Score=29.73 Aligned_cols=77 Identities=19% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|++ |+.+..++..+. .+..|+.++.+...++.+.+.++..|. ++.++.+|..+.... ..+
T Consensus 10 ~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 10 GKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 5567766654 667777776654 335899999998888777777665543 367788887653211 024
Q ss_pred CcCEEEEcCC
Q 012998 404 KCDKVLLDAP 413 (451)
Q Consensus 404 ~fD~VlvD~P 413 (451)
.+|.++..+.
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6899988653
No 430
>PRK05993 short chain dehydrogenase; Provisional
Probab=45.93 E-value=82 Score=30.36 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc----------cCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD----------NST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~----------~~~ 402 (451)
+.+||=.|| +|+.+.+++..+.. +..|++++.++..++.+.. .+ +.++..|..+... ...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----EG----LEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CC----ceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 556776665 68888888876643 4589999999887765543 23 4566778765321 012
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+..|.|+..+
T Consensus 75 g~id~li~~A 84 (277)
T PRK05993 75 GRLDALFNNG 84 (277)
T ss_pred CCccEEEECC
Confidence 4679998865
No 431
>PRK06138 short chain dehydrogenase; Provisional
Probab=45.91 E-value=1.2e+02 Score=28.31 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=52.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.+||=.|| +|+.+.+++..+-. +.+|+.++.+...+......+. .+ ..+.++.+|..+.... ..+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 556776666 57788888775543 3589999999887776666554 33 3477888888764211 014
Q ss_pred CcCEEEEcCCCCC
Q 012998 404 KCDKVLLDAPCSG 416 (451)
Q Consensus 404 ~fD~VlvD~PCSg 416 (451)
.+|.|+..+..+.
T Consensus 81 ~id~vi~~ag~~~ 93 (252)
T PRK06138 81 RLDVLVNNAGFGC 93 (252)
T ss_pred CCCEEEECCCCCC
Confidence 6899988665443
No 432
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=45.88 E-value=16 Score=33.70 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=38.8
Q ss_pred CCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHH------------HHHcCCCceEEEEcCccccccccCCCCcCEEE
Q 012998 343 APGGKTLYMASCLSGQG-LVYAIDINKGRLRILNET------------AKLHQVNSVIRTIHADLRTFADNSTVKCDKVL 409 (451)
Q Consensus 343 gpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~------------~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~Vl 409 (451)
|.|+.++.+|..+...| .|+++|+++++++.+++. +++..-..+..+ ..|..... ...|+++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~ai----~~adv~~ 81 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEAI----KDADVVF 81 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHHH----HH-SEEE
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhhh----hccceEE
Confidence 56666666665554444 899999999999887642 111110112332 23433321 2368888
Q ss_pred EcCCCCCccccccCCcccc
Q 012998 410 LDAPCSGLGVLSKRADLRW 428 (451)
Q Consensus 410 vD~PCSg~G~lrr~pd~~~ 428 (451)
+-+|+--.+ ...||+.+
T Consensus 82 I~VpTP~~~--~~~~Dls~ 98 (185)
T PF03721_consen 82 ICVPTPSDE--DGSPDLSY 98 (185)
T ss_dssp E----EBET--TTSBETHH
T ss_pred EecCCCccc--cCCccHHH
Confidence 888765544 45566655
No 433
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=45.34 E-value=58 Score=32.24 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=32.2
Q ss_pred hCCCCCCeEEeecCC-CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 329 VDPQPGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 329 l~~~~g~~VLDlcag-pG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
...++|++||-.|+| .|..++++|..++ ...|++++.++.+.+.+++
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 456789999997654 2445666777653 2478899888887766543
No 434
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=45.15 E-value=96 Score=30.20 Aligned_cols=45 Identities=13% Similarity=0.033 Sum_probs=29.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKL 380 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~ 380 (451)
....||++|+|+|--++.+|... ...|+--|. +..+..++.|...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~ 130 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDK 130 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhh
Confidence 35579999999997777666543 356666564 4455555555433
No 435
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.99 E-value=1.1e+02 Score=29.09 Aligned_cols=75 Identities=12% Similarity=-0.051 Sum_probs=50.4
Q ss_pred eEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCCCc
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~~f 405 (451)
+||-.| |+|+.+..++..+... ..|+.++.+...++.+...++..+. .+.++.+|..+.... ..+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455445 5677888887665443 4899999999888877777766553 366778888654211 11468
Q ss_pred CEEEEcCC
Q 012998 406 DKVLLDAP 413 (451)
Q Consensus 406 D~VlvD~P 413 (451)
|.|+..+.
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 99888653
No 436
>PRK06125 short chain dehydrogenase; Provisional
Probab=44.94 E-value=1.3e+02 Score=28.33 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc-----CCCCcCE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCDK 407 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~-----~~~~fD~ 407 (451)
+.+||=.|+ +|+.+..++..+.. +..|++++.++..++.+.+.+....-. .+.++..|..+.... ..+..|.
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGV-DVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567777775 56677777765543 358999999999888877777654322 366778887653211 1246888
Q ss_pred EEEcC
Q 012998 408 VLLDA 412 (451)
Q Consensus 408 VlvD~ 412 (451)
++..+
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 88754
No 437
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=44.60 E-value=2.2e+02 Score=26.84 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=50.1
Q ss_pred eEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCCCc
Q 012998 336 SIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKC 405 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~~f 405 (451)
+||=.|++ |+.+..++..+. .+.+|+.++.++..++.+.+.++..+ .+.++..|..+... ...+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 46666755 667777776654 34589999999988887777776544 26677888765321 012568
Q ss_pred CEEEEcCC
Q 012998 406 DKVLLDAP 413 (451)
Q Consensus 406 D~VlvD~P 413 (451)
|.++..+-
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 99988764
No 438
>PRK08278 short chain dehydrogenase; Provisional
Probab=44.52 E-value=90 Score=30.05 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=50.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHH-------HHHHHHHHHHcCCCceEEEEcCcccccccc----
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGR-------LRILNETAKLHQVNSVIRTIHADLRTFADN---- 400 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~r-------l~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---- 400 (451)
.|.+||=.|| +|+.+.+++..+.. +..|+.++.+... ++.+.+.+...+. .+.++.+|..+....
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG--QALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHH
Confidence 3557775555 67888888876643 3588888886542 4444444554443 366778887654210
Q ss_pred -----CCCCcCEEEEcCCCCC
Q 012998 401 -----STVKCDKVLLDAPCSG 416 (451)
Q Consensus 401 -----~~~~fD~VlvD~PCSg 416 (451)
..+.+|.|+..+....
T Consensus 82 ~~~~~~~g~id~li~~ag~~~ 102 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAIN 102 (273)
T ss_pred HHHHHHhCCCCEEEECCCCcC
Confidence 1146899999876543
No 439
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=44.26 E-value=42 Score=34.75 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=35.8
Q ss_pred hCCCCCCeEEeecC-C-CchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHH
Q 012998 329 VDPQPGQSIVDCCA-A-PGGKTLYMASCLS-GQGLVYAIDINKGRLRILNET 377 (451)
Q Consensus 329 l~~~~g~~VLDlca-g-pG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~ 377 (451)
..+++|++||=+|+ | -|..++++|..++ +..+|+++|.++.+++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 45678999988863 3 4555666777654 234799999999999988774
No 440
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=44.20 E-value=65 Score=32.51 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=38.3
Q ss_pred hCCCCCCeEEeecCC--CchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcc
Q 012998 329 VDPQPGQSIVDCCAA--PGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394 (451)
Q Consensus 329 l~~~~g~~VLDlcag--pG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da 394 (451)
...++|++||=.|++ .|..+++||..++. .++++--+++..+. ++.+|.+..|.+...|+
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~ 199 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLEL----LKELGADHVINYREEDF 199 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHH----HHhcCCCEEEcCCcccH
Confidence 457889999998854 45677788887642 66666666655553 44567654444444443
No 441
>PRK09072 short chain dehydrogenase; Provisional
Probab=44.09 E-value=1.5e+02 Score=28.16 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=50.0
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CCCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------STVK 404 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~~~ 404 (451)
+.+||=.|++ |+.+..++..+. .+..|++++.++..++.+...+ ..+ ..+.++..|..+.... ..+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP--GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC--CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5566766655 677777766553 3458999999998887766555 222 3477888888664311 0246
Q ss_pred cCEEEEcCCC
Q 012998 405 CDKVLLDAPC 414 (451)
Q Consensus 405 fD~VlvD~PC 414 (451)
.|.|+..+..
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999886543
No 442
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=44.06 E-value=96 Score=29.29 Aligned_cols=75 Identities=16% Similarity=0.072 Sum_probs=48.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.| |+|+.+.+++..+... .+|+.+|.+...++.+.+.+ +. .+.++.+|..+.... ..+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---GP--AAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---CC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 6678888888776533 48999999988877655433 21 366778887653211 124
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
..|.++..+..
T Consensus 80 ~id~li~~ag~ 90 (257)
T PRK07067 80 GIDILFNNAAL 90 (257)
T ss_pred CCCEEEECCCc
Confidence 67888875543
No 443
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.68 E-value=1.1e+02 Score=29.63 Aligned_cols=77 Identities=10% Similarity=-0.018 Sum_probs=48.1
Q ss_pred CCeEEeecCCC-chHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCC
Q 012998 334 GQSIVDCCAAP-GGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (451)
Q Consensus 334 g~~VLDlcagp-G~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~ 402 (451)
|..||=.|++. +|.+..+|..+.. +..|+.++.+....+.+.+..+..+.. .++..|..+... ...
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~---~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD---YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc---eEEEecCCCHHHHHHHHHHHHHHc
Confidence 67888888874 6788888776543 358888888864333444444444432 356678766431 012
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.++.++-
T Consensus 82 g~iDilVnnAG 92 (274)
T PRK08415 82 GKIDFIVHSVA 92 (274)
T ss_pred CCCCEEEECCc
Confidence 57899888763
No 444
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=43.15 E-value=93 Score=30.73 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012998 330 DPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (451)
Q Consensus 330 ~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~ 375 (451)
...+|++||-.++|. |..+.++|..++ ...|++++.++.+.+.++
T Consensus 162 ~~~~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 162 GDLAGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHH
Confidence 334789999977654 445666777653 237899999988887543
No 445
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=43.06 E-value=91 Score=31.17 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=54.0
Q ss_pred CCCeEEeecCCCchHHHHHHH-HcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCC
Q 012998 333 PGQSIVDCCAAPGGKTLYMAS-CLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~-~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~ 402 (451)
.|+.||=-|+|.|- +..+|. ....+.+++..|++.+-.+...+.+++.| .+.....|..+..+ ..-
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 48899999998874 333332 22234578899999999999999888887 37777788766432 123
Q ss_pred CCcCEEEEcC
Q 012998 403 VKCDKVLLDA 412 (451)
Q Consensus 403 ~~fD~VlvD~ 412 (451)
+..|+++.+|
T Consensus 113 G~V~ILVNNA 122 (300)
T KOG1201|consen 113 GDVDILVNNA 122 (300)
T ss_pred CCceEEEecc
Confidence 5788888865
No 446
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=42.62 E-value=64 Score=32.89 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=45.2
Q ss_pred hhhCCCCC----CeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc
Q 012998 327 AVVDPQPG----QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR 395 (451)
Q Consensus 327 ~~l~~~~g----~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~ 395 (451)
.++....| ...+|+|+|.|..+-++.... -.|-+++.+..-+.....++. .|+. .+.+|..
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~-~gV~----~v~gdmf 231 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA-PGVE----HVAGDMF 231 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc-CCcc----eeccccc
Confidence 34444445 789999999999999998854 348899999888888877776 5643 4556654
No 447
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=42.56 E-value=1.1e+02 Score=28.75 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=53.7
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||=.|+ +|+.+..++..+. .+..|+.++.+++.+..+.+.++..|. .+.++.+|..+.... ..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4678887775 5677777776553 346899999999888877777776664 366788887653210 12
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+++|.|+..+-
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 46788888664
No 448
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.18 E-value=1.9e+02 Score=27.11 Aligned_cols=79 Identities=15% Similarity=0.011 Sum_probs=53.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+..++..+.. +.+|+.++.++..++.+.+.++..+. .+.++..|..+.... ..+
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 557775555 46777777765543 35899999999988888777776664 366778887654210 124
Q ss_pred CcCEEEEcCCCC
Q 012998 404 KCDKVLLDAPCS 415 (451)
Q Consensus 404 ~fD~VlvD~PCS 415 (451)
..|.++..+...
T Consensus 83 ~id~li~~ag~~ 94 (254)
T PRK07478 83 GLDIAFNNAGTL 94 (254)
T ss_pred CCCEEEECCCCC
Confidence 689999877543
No 449
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=42.10 E-value=66 Score=30.72 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.1
Q ss_pred hhCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q 012998 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNE 376 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~ 376 (451)
...+.+|++||=.|+|+ |..+.++|..++. ..|++++.++++++.+++
T Consensus 92 ~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 92 DAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA 140 (277)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH
Confidence 45677899999887654 5556667776542 249999999998875554
No 450
>PRK11524 putative methyltransferase; Provisional
Probab=41.76 E-value=17 Score=35.96 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=22.5
Q ss_pred EEEEcCccccccc-cCCCCcCEEEEcCCCC
Q 012998 387 IRTIHADLRTFAD-NSTVKCDKVLLDAPCS 415 (451)
Q Consensus 387 I~~~~~Da~~~~~-~~~~~fD~VlvD~PCS 415 (451)
.+++++|...+.. ..+++||+|++|||.-
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~ 38 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYN 38 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcc
Confidence 4678999988643 2357899999999983
No 451
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=41.70 E-value=61 Score=32.68 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=38.6
Q ss_pred hCCCCCCeEEeecC--CCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCA--APGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlca--gpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|+ |.|..++++|..++ .+|++++.++.+++.+++ .+|.+.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 45788999998887 36667788888764 579999999988776642 357654
No 452
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=41.39 E-value=80 Score=31.65 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=45.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---C-CCCcCEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---S-TVKCDKV 408 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~-~~~fD~V 408 (451)
|.+||-.| |+|+.+.+++..+-.. ..|++++.+..........+ +..+.+.++.+|..+.... . ...+|.|
T Consensus 4 ~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 4 GKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL---NLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH---hhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 56777666 5678888888766533 47999998765433222222 2222366778887654321 1 1247888
Q ss_pred EEcCC
Q 012998 409 LLDAP 413 (451)
Q Consensus 409 lvD~P 413 (451)
+.-+-
T Consensus 80 ih~A~ 84 (349)
T TIGR02622 80 FHLAA 84 (349)
T ss_pred EECCc
Confidence 87654
No 453
>PRK05872 short chain dehydrogenase; Provisional
Probab=41.24 E-value=1.2e+02 Score=29.68 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=50.4
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
.|.+||-.|+ +|+.+..++..+... .+|+.++.++..++.+.+.+.. ...+..+..|..+.... ..
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4677886664 467788887766533 5899999999887766555432 22355556787653210 12
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+.+|.|+..+--
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 578999987743
No 454
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=41.22 E-value=2.1e+02 Score=28.52 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=51.2
Q ss_pred hhhhhhhhhCCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCc------c
Q 012998 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHAD------L 394 (451)
Q Consensus 321 as~l~~~~l~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~D------a 394 (451)
....+..+++..+...++=.++|+....+.+.....++..|+..+.... -......++..|.+ +.++..| .
T Consensus 37 ~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~~-~~~~~~~~~~~g~~--~~~v~~~~~~~~~~ 113 (356)
T cd06451 37 ILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGVF-GDRWADMAERYGAD--VDVVEKPWGEAVSP 113 (356)
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhCCCCCEEEEecCCch-hHHHHHHHHHhCCC--eEEeecCCCCCCCH
Confidence 3345556666644455666666677666666555555556666654321 11123445566764 4444332 1
Q ss_pred ccccccCCC-CcCEEEEcCCCCCcccc
Q 012998 395 RTFADNSTV-KCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 395 ~~~~~~~~~-~fD~VlvD~PCSg~G~l 420 (451)
..+...... ..+.|++..|++.+|++
T Consensus 114 ~~l~~~i~~~~~~~v~i~~~~~~~G~~ 140 (356)
T cd06451 114 EEIAEALEQHDIKAVTLTHNETSTGVL 140 (356)
T ss_pred HHHHHHHhccCCCEEEEeccCCCcccc
Confidence 222111122 45678877788888874
No 455
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=41.22 E-value=73 Score=34.64 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCCCCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCC
Q 012998 330 DPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367 (451)
Q Consensus 330 ~~~~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~ 367 (451)
.+.+|++|+=+|+||.|.+........ +..|+.+|..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~ 169 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAG 169 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecC
Confidence 456799999999999998775543322 3478889853
No 456
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=41.11 E-value=89 Score=30.90 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=34.0
Q ss_pred hhhCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012998 327 AVVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (451)
Q Consensus 327 ~~l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~ 375 (451)
....+.+|++||-.++|. |..++++|..++ ..|+++..++++.+.++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAR 200 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHH
Confidence 345677899999997653 556677777754 67899988888877663
No 457
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=41.01 E-value=1e+02 Score=30.89 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=51.8
Q ss_pred eEEeecCCCchHHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccc-cccc--cCCCCcCEEEE
Q 012998 336 SIVDCCAAPGGKTLYMASCLSG--QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLR-TFAD--NSTVKCDKVLL 410 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~--~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~-~~~~--~~~~~fD~Vlv 410 (451)
+|| +.-|+|..+.+++..+-. +-.|+++|.+...+..+ .+.. .+.++.+|.+ .... .....+|.|+-
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~------~~~~-~~~~~~~Dl~~~~~~~~~~~~~~d~ViH 74 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDL------VNHP-RMHFFEGDITINKEWIEYHVKKCDVILP 74 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh------ccCC-CeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence 455 455679999999887743 24899999876543211 1222 3778889986 3211 11235798886
Q ss_pred cCCCCCccccccCCccccc
Q 012998 411 DAPCSGLGVLSKRADLRWN 429 (451)
Q Consensus 411 D~PCSg~G~lrr~pd~~~~ 429 (451)
=+-++..+....+|+..|.
T Consensus 75 ~aa~~~~~~~~~~p~~~~~ 93 (347)
T PRK11908 75 LVAIATPATYVKQPLRVFE 93 (347)
T ss_pred CcccCChHHhhcCcHHHHH
Confidence 5555544444456665554
No 458
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=40.68 E-value=38 Score=27.36 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=10.0
Q ss_pred cCEEEEcCCCCCc
Q 012998 405 CDKVLLDAPCSGL 417 (451)
Q Consensus 405 fD~VlvD~PCSg~ 417 (451)
||.|++|.|.+..
T Consensus 40 ~d~viiD~p~~~~ 52 (104)
T cd02042 40 YDYIIIDTPPSLG 52 (104)
T ss_pred CCEEEEeCcCCCC
Confidence 7888888887654
No 459
>PRK08589 short chain dehydrogenase; Validated
Probab=40.54 E-value=1.4e+02 Score=28.54 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=49.9
Q ss_pred CCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
|.+||=.|++ |+.+..++..+. .+.+|+.++.+ ..++.+.+.++..+. .+.++..|..+.... ..+
T Consensus 6 ~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 6 NKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG--KAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC--eEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5567766654 567777776554 34689999999 666666666655543 366777887653210 124
Q ss_pred CcCEEEEcCCC
Q 012998 404 KCDKVLLDAPC 414 (451)
Q Consensus 404 ~fD~VlvD~PC 414 (451)
..|.++..+-.
T Consensus 82 ~id~li~~Ag~ 92 (272)
T PRK08589 82 RVDVLFNNAGV 92 (272)
T ss_pred CcCEEEECCCC
Confidence 68999988754
No 460
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.50 E-value=1.7e+02 Score=27.66 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=51.7
Q ss_pred CCCeEEeecCCC-chHHHHHHHHcCCC-ceEEEEeCC-----------HHHHHHHHHHHHHcCCCceEEEEcCccccccc
Q 012998 333 PGQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDIN-----------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (451)
Q Consensus 333 ~g~~VLDlcagp-G~kT~~la~~~~~~-g~V~AvDi~-----------~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~ 399 (451)
.|.+||=.|+.. |+.+..++..+... ..|+.++.+ ...+..+.+.++..|. .+.++..|..+...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHH
Confidence 477899999874 67778777665433 467766432 2334455566666664 36777888765321
Q ss_pred ---------cCCCCcCEEEEcCCCCC
Q 012998 400 ---------NSTVKCDKVLLDAPCSG 416 (451)
Q Consensus 400 ---------~~~~~fD~VlvD~PCSg 416 (451)
...+..|.|+..+-+..
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCC
Confidence 01245799999886644
No 461
>PRK07791 short chain dehydrogenase; Provisional
Probab=40.44 E-value=1.9e+02 Score=28.14 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=49.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCH---------HHHHHHHHHHHHcCCCceEEEEcCccccccc---
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINK---------GRLRILNETAKLHQVNSVIRTIHADLRTFAD--- 399 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~---------~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~--- 399 (451)
.|.++|-.|++ ||.+..++..+- .+..|+.+|.+. ..++.+.+.+...|. .+.++..|..+...
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCCHHHHHH
Confidence 46778888866 466777766553 345788888765 666666666655554 35677788765321
Q ss_pred ------cCCCCcCEEEEcCC
Q 012998 400 ------NSTVKCDKVLLDAP 413 (451)
Q Consensus 400 ------~~~~~fD~VlvD~P 413 (451)
...+..|.++..+-
T Consensus 82 ~~~~~~~~~g~id~lv~nAG 101 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAG 101 (286)
T ss_pred HHHHHHHhcCCCCEEEECCC
Confidence 01257899888653
No 462
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=40.25 E-value=71 Score=33.34 Aligned_cols=73 Identities=16% Similarity=0.090 Sum_probs=49.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---cCCCCcCEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---NSTVKCDKVL 409 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---~~~~~fD~Vl 409 (451)
..+|+=+|+ |..+..+++.+.. +..|+.+|.++++++.+++.. .+ +.++.+|+.+... ..-..+|.|+
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~-~~~i~gd~~~~~~L~~~~~~~a~~vi 302 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PN-TLVLHGDGTDQELLEEEGIDEADAFI 302 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CC-CeEEECCCCCHHHHHhcCCccCCEEE
Confidence 567777777 5666667776654 458999999999988776642 12 4567888865422 1235688888
Q ss_pred EcCCC
Q 012998 410 LDAPC 414 (451)
Q Consensus 410 vD~PC 414 (451)
+-.+.
T Consensus 303 ~~~~~ 307 (453)
T PRK09496 303 ALTND 307 (453)
T ss_pred ECCCC
Confidence 75553
No 463
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=40.12 E-value=1.2e+02 Score=30.80 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=34.6
Q ss_pred hCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|+|+ |..+.++|..++ ...|+++|.++.+++.++ .+|.+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 4578899999887532 223344555543 237999999999988764 367653
No 464
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.96 E-value=30 Score=31.62 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH 381 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~ 381 (451)
.|.+||++|+|--+.+-.|.....+...|.-.|-++..++-.++...++
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence 4789999999855544444333334578999999999988877766554
No 465
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=39.86 E-value=1.3e+02 Score=31.01 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=46.8
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCC-CcCEEEEcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTV-KCDKVLLDA 412 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~-~fD~VlvD~ 412 (451)
++.++=..+|.......+...++++..|+..+..-......-+.+...|+. +.++..|...+...... .-++|+++.
T Consensus 68 ~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~--v~~~~~d~~~l~~~i~~~~tklV~ie~ 145 (385)
T PRK08574 68 GVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVK--VVLAYPSTEDIIEAIKEGRTKLVFIET 145 (385)
T ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcE--EEEECCCHHHHHHhcCccCceEEEEEC
Confidence 345555566655555555555665566776666554433333334556653 44444443333322222 467888888
Q ss_pred CCCCcccc
Q 012998 413 PCSGLGVL 420 (451)
Q Consensus 413 PCSg~G~l 420 (451)
|++-+|.+
T Consensus 146 p~NPtG~v 153 (385)
T PRK08574 146 MTNPTLKV 153 (385)
T ss_pred CCCCCCEe
Confidence 88887763
No 466
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=39.75 E-value=38 Score=26.72 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=29.9
Q ss_pred ecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEcCC
Q 012998 340 CCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413 (451)
Q Consensus 340 lcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD~P 413 (451)
++||.|.-|..+++ ..+++.++++|++- ........... .....+|+|++=|.
T Consensus 4 vvC~~Gi~TS~~~~------------------~~i~~~~~~~gi~~--~~~~~~~~~~~-~~~~~~D~il~~~~ 56 (90)
T PF02302_consen 4 VVCGSGIGTSLMVA------------------NKIKKALKELGIEV--EVSAGSILEVE-EIADDADLILLTPQ 56 (90)
T ss_dssp EEESSSSHHHHHHH------------------HHHHHHHHHTTECE--EEEEEETTTHH-HHHTT-SEEEEEES
T ss_pred EECCChHHHHHHHH------------------HHHHHHHHhccCce--EEEEecccccc-cccCCCcEEEEcCc
Confidence 56788877776663 25667788888763 33333311111 11245899998655
No 467
>PRK08264 short chain dehydrogenase; Validated
Probab=39.54 E-value=87 Score=29.08 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.0
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc-----CCCCcC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN-----STVKCD 406 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g--~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~-----~~~~fD 406 (451)
+.+||=.| |+|+.+.+++..+-..| +|++++.+...+.. .+ +.+.++.+|..+.... ..+..|
T Consensus 6 ~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~--~~~~~~~~D~~~~~~~~~~~~~~~~id 75 (238)
T PRK08264 6 GKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LG--PRVVPLQLDVTDPASVAAAAEAASDVT 75 (238)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cC--CceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 45677666 57888888887665444 89999988776543 22 2367788887654321 113578
Q ss_pred EEEEcC
Q 012998 407 KVLLDA 412 (451)
Q Consensus 407 ~VlvD~ 412 (451)
.|+..+
T Consensus 76 ~vi~~a 81 (238)
T PRK08264 76 ILVNNA 81 (238)
T ss_pred EEEECC
Confidence 888765
No 468
>PLN00198 anthocyanidin reductase; Provisional
Probab=39.45 E-value=76 Score=31.57 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=47.2
Q ss_pred hCCCCCCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHc-CCCceEEEEcCcccccccc--CCCC
Q 012998 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLH-QVNSVIRTIHADLRTFADN--STVK 404 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~-g~~~~I~~~~~Da~~~~~~--~~~~ 404 (451)
|.|..+.+||=.|+ +|..+.+++..+-..| +|+++..+......... +..+ ... .+.++.+|.++.... .-..
T Consensus 4 ~~~~~~~~vlItG~-~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~ 80 (338)
T PLN00198 4 LTPTGKKTACVIGG-TGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELG-DLKIFGADLTDEESFEAPIAG 80 (338)
T ss_pred ccCCCCCeEEEECC-chHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCC-ceEEEEcCCCChHHHHHHHhc
Confidence 34455677776654 5999999988765444 78777766543332221 1111 112 377888998764321 1135
Q ss_pred cCEEEEcC
Q 012998 405 CDKVLLDA 412 (451)
Q Consensus 405 fD~VlvD~ 412 (451)
+|.|+.-+
T Consensus 81 ~d~vih~A 88 (338)
T PLN00198 81 CDLVFHVA 88 (338)
T ss_pred CCEEEEeC
Confidence 79888654
No 469
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=39.37 E-value=1.1e+02 Score=26.60 Aligned_cols=81 Identities=19% Similarity=0.096 Sum_probs=54.0
Q ss_pred EEeecCCCchHHHHHHHHcCCC--ceEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCC
Q 012998 337 IVDCCAAPGGKTLYMASCLSGQ--GLVYAIDIN--KGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~~~--g~V~AvDi~--~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~ 403 (451)
||=.|++ |+.+..++..+-.. ..|+.+..+ ...++.+...++..+ . .+.++..|..+... ...+
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-A-KITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-S-EEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-c-ccccccccccccccccccccccccccc
Confidence 4445544 66777666655333 478888888 788888888888777 3 48899999765421 1135
Q ss_pred CcCEEEEcCCCCCcccc
Q 012998 404 KCDKVLLDAPCSGLGVL 420 (451)
Q Consensus 404 ~fD~VlvD~PCSg~G~l 420 (451)
.+|.++..+.....+.+
T Consensus 80 ~ld~li~~ag~~~~~~~ 96 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSL 96 (167)
T ss_dssp SESEEEEECSCTTSBSG
T ss_pred ccccccccccccccccc
Confidence 78999987665554443
No 470
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=38.52 E-value=60 Score=32.62 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=32.6
Q ss_pred CCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeC---CHHHHHHHHHHHHHcCCC
Q 012998 331 PQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDI---NKGRLRILNETAKLHQVN 384 (451)
Q Consensus 331 ~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi---~~~rl~~l~~~~~~~g~~ 384 (451)
+++|++||=.|+|+ |..+.++|..++ ..|++++. ++.+++.++ ++|.+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----ELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----HcCCE
Confidence 46899999888754 334556666653 47999987 677777654 45653
No 471
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=38.19 E-value=2.3e+02 Score=28.46 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=51.7
Q ss_pred hhhhhhhhCCCCCCeEEeecCCCchHHHHHH-HHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc
Q 012998 322 AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMA-SCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN 400 (451)
Q Consensus 322 s~l~~~~l~~~~g~~VLDlcagpG~kT~~la-~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~ 400 (451)
|.+++..|......+|.=+|||.=+.....+ ....+-.+|+..|.++++.+...+.+++.|+. +.. ..|..+..
T Consensus 116 salaa~~La~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~--v~~-~~~~~eav-- 190 (325)
T TIGR02371 116 GGVAAKYLARKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVP--VRA-ATDPREAV-- 190 (325)
T ss_pred HHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCc--EEE-eCCHHHHh--
Confidence 5666677776656677766666544432121 22344578999999999999888888777753 332 34544433
Q ss_pred CCCCcCEEEE
Q 012998 401 STVKCDKVLL 410 (451)
Q Consensus 401 ~~~~fD~Vlv 410 (451)
...|+|++
T Consensus 191 --~~aDiVit 198 (325)
T TIGR02371 191 --EGCDILVT 198 (325)
T ss_pred --ccCCEEEE
Confidence 34688887
No 472
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=38.06 E-value=1.2e+02 Score=28.82 Aligned_cols=61 Identities=16% Similarity=0.065 Sum_probs=41.1
Q ss_pred eEEeecCCCchHHHHHHHHcC-----CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccc
Q 012998 336 SIVDCCAAPGGKTLYMASCLS-----GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF 397 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~-----~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~ 397 (451)
.||-.|+ +||.+..++..+- .+..|+.++.++..++.+.+.++.......+.++..|..+.
T Consensus 2 ~vlItGa-s~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGA-SRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecC-CCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCH
Confidence 3565565 4677777776553 34579999999998888877776532222367788887654
No 473
>PRK06198 short chain dehydrogenase; Provisional
Probab=38.02 E-value=1.5e+02 Score=27.84 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=51.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-Cce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------C
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGL-VYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~-V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~ 401 (451)
.+.+||=.| |+|+.+.++++.+.. +.+ |+.++.++..+......+...+. .+.++..|..+.... .
T Consensus 5 ~~k~vlItG-a~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (260)
T PRK06198 5 DGKVALVTG-GTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA--KAVFVQADLSDVEDCRRVVAAADEA 81 (260)
T ss_pred CCcEEEEeC-CCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356777666 467788888776643 345 99999988777655555544443 366777887653210 0
Q ss_pred CCCcCEEEEcCCCC
Q 012998 402 TVKCDKVLLDAPCS 415 (451)
Q Consensus 402 ~~~fD~VlvD~PCS 415 (451)
.+.+|.|+..+-.+
T Consensus 82 ~g~id~li~~ag~~ 95 (260)
T PRK06198 82 FGRLDALVNAAGLT 95 (260)
T ss_pred hCCCCEEEECCCcC
Confidence 13589988766443
No 474
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=38.01 E-value=53 Score=33.36 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=37.1
Q ss_pred EEeecCCCchHHHHHH---HHc---CCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc------cCCCC
Q 012998 337 IVDCCAAPGGKTLYMA---SCL---SGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD------NSTVK 404 (451)
Q Consensus 337 VLDlcagpG~kT~~la---~~~---~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~------~~~~~ 404 (451)
|+.=++|+| ||+.+. ..+ .....+.-+-.+..-...+++.+..................+.. .....
T Consensus 5 ~I~G~aGTG-KTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (352)
T PF09848_consen 5 LITGGAGTG-KTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKNK 83 (352)
T ss_pred EEEecCCcC-HHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCCc
Confidence 455567886 665443 333 22345555556666677777776654311101111111111111 12367
Q ss_pred cCEEEEc
Q 012998 405 CDKVLLD 411 (451)
Q Consensus 405 fD~VlvD 411 (451)
||+|++|
T Consensus 84 ~DviivD 90 (352)
T PF09848_consen 84 YDVIIVD 90 (352)
T ss_pred CCEEEEe
Confidence 9999999
No 475
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=37.94 E-value=85 Score=31.31 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=35.9
Q ss_pred hhCCCCCCeEEeecCCCch-HHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 328 VVDPQPGQSIVDCCAAPGG-KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagpG~-kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
...+++|++||=.|+|+-| .+.++|..++ .+|++++.++.+++.++ ++|.+.
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~----~~Ga~~ 212 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLAL----ALGAAS 212 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH----HhCCce
Confidence 3567889999999875333 3445566543 47999999999876554 467653
No 476
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=37.87 E-value=1.7e+02 Score=28.87 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=42.2
Q ss_pred CCCeEEeecCC-CchHHHHHHHHcCCCceEEEEeCC-------------------HHHHHHHHHHHHHcCCCceEEEEcC
Q 012998 333 PGQSIVDCCAA-PGGKTLYMASCLSGQGLVYAIDIN-------------------KGRLRILNETAKLHQVNSVIRTIHA 392 (451)
Q Consensus 333 ~g~~VLDlcag-pG~kT~~la~~~~~~g~V~AvDi~-------------------~~rl~~l~~~~~~~g~~~~I~~~~~ 392 (451)
.+.+|+=+||| .|+.+.....+.+ -|+|+-+|.+ ..+.+.+.+.+...+-.-.|+.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 36688888887 4555444444433 3678888765 2355577777777665434544422
Q ss_pred cc--ccccccCCCCcCEEEE
Q 012998 393 DL--RTFADNSTVKCDKVLL 410 (451)
Q Consensus 393 Da--~~~~~~~~~~fD~Vlv 410 (451)
-. ..........||.|+.
T Consensus 108 ~i~~e~~~~ll~~~~D~VId 127 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVID 127 (268)
T ss_pred ccChhhHHHHhcCCCCEEEE
Confidence 11 1111112246888753
No 477
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=37.84 E-value=1.5e+02 Score=26.97 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCCeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHH
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAK 379 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~ 379 (451)
.+.+|+=+|+ +|+.+..++..+. ....|+.++.+..+++.+.+.+.
T Consensus 27 ~~~~vlVlGg-tG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~ 73 (194)
T cd01078 27 KGKTAVVLGG-TGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR 73 (194)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 4567777765 3555555544433 23589999999888877766554
No 478
>PRK05866 short chain dehydrogenase; Provisional
Probab=37.75 E-value=1.3e+02 Score=29.43 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=52.1
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~ 403 (451)
+.+||=.|+ +|+.+..++..+.. +..|++++.+.+.++.+.+.+...+. .+.++.+|..+.... ..+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456776665 57788888776543 35899999999988888777766554 366778887653210 124
Q ss_pred CcCEEEEcC
Q 012998 404 KCDKVLLDA 412 (451)
Q Consensus 404 ~fD~VlvD~ 412 (451)
..|.|+..+
T Consensus 117 ~id~li~~A 125 (293)
T PRK05866 117 GVDILINNA 125 (293)
T ss_pred CCCEEEECC
Confidence 689998854
No 479
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=37.55 E-value=49 Score=36.60 Aligned_cols=67 Identities=10% Similarity=0.132 Sum_probs=44.7
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCEEE
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQG-LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVL 409 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~g-~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~Vl 409 (451)
..+|+=+|+|.=| ..+++.+...+ .++++|.|+++++.+++ .|. .++.+|+++..-. .-+..|.|+
T Consensus 400 ~~~vII~G~Gr~G--~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g~----~v~~GDat~~~~L~~agi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFG--QIVGRLLLSSGVKMTVLDHDPDHIETLRK----FGM----KVFYGDATRMDLLESAGAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHH--HHHHHHHHhCCCCEEEEECCHHHHHHHHh----cCC----eEEEEeCCCHHHHHhcCCCcCCEEE
Confidence 3577777776654 44566554444 79999999999998765 353 4678998875321 124677777
Q ss_pred E
Q 012998 410 L 410 (451)
Q Consensus 410 v 410 (451)
+
T Consensus 470 v 470 (621)
T PRK03562 470 N 470 (621)
T ss_pred E
Confidence 6
No 480
>PRK08303 short chain dehydrogenase; Provisional
Probab=37.48 E-value=1.6e+02 Score=29.05 Aligned_cols=77 Identities=14% Similarity=0.034 Sum_probs=50.0
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCC----------HHHHHHHHHHHHHcCCCceEEEEcCcccccccc-
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN----------KGRLRILNETAKLHQVNSVIRTIHADLRTFADN- 400 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~----------~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~- 400 (451)
.|..||-.|++ +|.+..+++.+-. +..|+.++.+ ++.++.+.+.++..|. .+.++..|..+....
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG--RGIAVQVDHLVPEQVR 83 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC--ceEEEEcCCCCHHHHH
Confidence 36678888755 5678878776643 3588888887 3456666666665553 256778887754210
Q ss_pred --------CCCCcCEEEEcC
Q 012998 401 --------STVKCDKVLLDA 412 (451)
Q Consensus 401 --------~~~~fD~VlvD~ 412 (451)
..+..|.++.++
T Consensus 84 ~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHcCCccEEEECC
Confidence 125689988876
No 481
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=37.38 E-value=48 Score=36.01 Aligned_cols=69 Identities=14% Similarity=0.063 Sum_probs=45.8
Q ss_pred CeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---CCCCcCEEEE
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---STVKCDKVLL 410 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---~~~~fD~Vlv 410 (451)
++|+=+|+| ..+..+++.+... ..++.+|.|+++++.+++ .| ..++.+|+.+..-. .-+.+|.|++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456655555 5666777776544 479999999999887763 34 34678998874311 1247887877
Q ss_pred cCC
Q 012998 411 DAP 413 (451)
Q Consensus 411 D~P 413 (451)
-.+
T Consensus 488 ~~~ 490 (558)
T PRK10669 488 TIP 490 (558)
T ss_pred EcC
Confidence 544
No 482
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=37.31 E-value=85 Score=31.64 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=42.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHc---C-CCceEEEEeCCHHH---HHHHHHHHHHcCCCceEEEE--cCcccc-----cc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCL---S-GQGLVYAIDINKGR---LRILNETAKLHQVNSVIRTI--HADLRT-----FA 398 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~---~-~~g~V~AvDi~~~r---l~~l~~~~~~~g~~~~I~~~--~~Da~~-----~~ 398 (451)
++..|+=+|..--|||+.++.+. . .+++|.-+|.+..+ ++.++....+.++. +... ..|... +.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~--~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVP--VIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCce--EEEeCCCCCHHHHHHHHHH
Confidence 34556656655556887655432 2 23566666665544 35556667777764 2221 112211 11
Q ss_pred ccCCCCcCEEEEcCC
Q 012998 399 DNSTVKCDKVLLDAP 413 (451)
Q Consensus 399 ~~~~~~fD~VlvD~P 413 (451)
......||.|++|.|
T Consensus 191 ~~~~~~~D~ViIDTa 205 (318)
T PRK10416 191 AAKARGIDVLIIDTA 205 (318)
T ss_pred HHHhCCCCEEEEeCC
Confidence 112367999999976
No 483
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.26 E-value=1.1e+02 Score=29.03 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=47.4
Q ss_pred CCCeEEeecCCC-chHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------C
Q 012998 333 PGQSIVDCCAAP-GGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------S 401 (451)
Q Consensus 333 ~g~~VLDlcagp-G~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~ 401 (451)
.|..||-.|++. +|.+..++..+- .+.+|+.++.+....+.+ +...-. .+.++..|+.+.... .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~----~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSL----QKLVDE-EDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHH----HhhccC-ceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899888885 678888887764 345888888774322222 222112 366778888653210 1
Q ss_pred CCCcCEEEEcCC
Q 012998 402 TVKCDKVLLDAP 413 (451)
Q Consensus 402 ~~~fD~VlvD~P 413 (451)
.+.+|.++.++-
T Consensus 81 ~g~iD~lv~nAg 92 (252)
T PRK06079 81 VGKIDGIVHAIA 92 (252)
T ss_pred hCCCCEEEEccc
Confidence 256899888763
No 484
>PRK06482 short chain dehydrogenase; Provisional
Probab=37.21 E-value=93 Score=29.78 Aligned_cols=75 Identities=17% Similarity=0.021 Sum_probs=48.6
Q ss_pred eEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCCCc
Q 012998 336 SIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVKC 405 (451)
Q Consensus 336 ~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~~f 405 (451)
+||=.| |+|+.+.+++..+-.. ..|++++.++..++.+.... + ..+.++.+|..+.... ..+..
T Consensus 4 ~vlVtG-asg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 4 TWFITG-ASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---G--DRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred EEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---c--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 566444 4788888888766543 58999999988776655432 2 2367788888754211 02457
Q ss_pred CEEEEcCCCCC
Q 012998 406 DKVLLDAPCSG 416 (451)
Q Consensus 406 D~VlvD~PCSg 416 (451)
|.|+..+-...
T Consensus 78 d~vi~~ag~~~ 88 (276)
T PRK06482 78 DVVVSNAGYGL 88 (276)
T ss_pred CEEEECCCCCC
Confidence 99998654443
No 485
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.11 E-value=1.5e+02 Score=27.99 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=48.3
Q ss_pred CCeEEeecCCC-chHHHHHHHHcCCC-ceEEEEeCC------------HHHHHHHHHHHHHcCCCceEEEEcCccccccc
Q 012998 334 GQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDIN------------KGRLRILNETAKLHQVNSVIRTIHADLRTFAD 399 (451)
Q Consensus 334 g~~VLDlcagp-G~kT~~la~~~~~~-g~V~AvDi~------------~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~ 399 (451)
+..||=.|++. |+.+..++..+... ..|+.++.+ ..... +...++..+. .+.++..|..+...
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~~~~~~ 81 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV--RCEHMEIDLSQPYA 81 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC--eEEEEECCCCCHHH
Confidence 56788888774 78888888766533 488888876 22332 4444444443 37788888866331
Q ss_pred c---------CCCCcCEEEEcC
Q 012998 400 N---------STVKCDKVLLDA 412 (451)
Q Consensus 400 ~---------~~~~fD~VlvD~ 412 (451)
. ..+.+|.|+..+
T Consensus 82 ~~~~~~~~~~~~g~id~vi~~a 103 (256)
T PRK12748 82 PNRVFYAVSERLGDPSILINNA 103 (256)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 0 124689888755
No 486
>PRK07775 short chain dehydrogenase; Provisional
Probab=37.03 E-value=2.1e+02 Score=27.38 Aligned_cols=77 Identities=10% Similarity=-0.086 Sum_probs=51.3
Q ss_pred CeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCCC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~~ 404 (451)
..||=.| |+|+.+.+++..+-.. .+|++++.+...+......+...+. .+.++.+|..+.... ..+.
T Consensus 11 ~~vlVtG-a~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 11 RPALVAG-ASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGG--EAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 4677666 4688888888766533 4788888888777766666665553 377778887754311 1146
Q ss_pred cCEEEEcCCC
Q 012998 405 CDKVLLDAPC 414 (451)
Q Consensus 405 fD~VlvD~PC 414 (451)
.|.|+..+-.
T Consensus 88 id~vi~~Ag~ 97 (274)
T PRK07775 88 IEVLVSGAGD 97 (274)
T ss_pred CCEEEECCCc
Confidence 7999987643
No 487
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=36.96 E-value=1.8e+02 Score=28.95 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=40.3
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~ 383 (451)
.|.+||=+|||--.++...+-...+..+|+-+..+..+.+.+.+.+...+.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~ 175 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA 175 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc
Confidence 478999999987777776655544446899999999999999988887764
No 488
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=36.73 E-value=1.3e+02 Score=29.64 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=32.3
Q ss_pred hhCCCCCCeEEeecCCC-chHHHHHHHHcCCCceEEEEeCCHHHHHHHH
Q 012998 328 VVDPQPGQSIVDCCAAP-GGKTLYMASCLSGQGLVYAIDINKGRLRILN 375 (451)
Q Consensus 328 ~l~~~~g~~VLDlcagp-G~kT~~la~~~~~~g~V~AvDi~~~rl~~l~ 375 (451)
.+.+.+|++||-.++|. |..+.++|..++ ...|++++.++.+.+.++
T Consensus 154 ~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G-~~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 154 LAGITLGDTVVVIGAGTIGLLAIQWLKILG-AKRVIAVDIDDEKLAVAR 201 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH
Confidence 45677899999997544 555666776653 224899988887776653
No 489
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=36.69 E-value=1.2e+02 Score=30.66 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=34.2
Q ss_pred hCCCCCCeEEeecCCCchHH---HHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCc
Q 012998 329 VDPQPGQSIVDCCAAPGGKT---LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385 (451)
Q Consensus 329 l~~~~g~~VLDlcagpG~kT---~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~ 385 (451)
..+++|++||=.|+ |+.. +++|..++ ..+|+++|.++.+++.++ .+|.+.
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~----~~ga~~ 232 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK----EFGATD 232 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCCc
Confidence 45788999998865 4444 45555543 237999999999988774 356643
No 490
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.68 E-value=1.8e+02 Score=28.60 Aligned_cols=79 Identities=18% Similarity=0.044 Sum_probs=49.2
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCC-HHHHHHHHHHHHHcCCCceEEEEcCcccccccc--------CC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDIN-KGRLRILNETAKLHQVNSVIRTIHADLRTFADN--------ST 402 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~-~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~--------~~ 402 (451)
.|.++|=.|++ |+.+..++..+-. +.+|+.+|.+ ...++.+.+.+...|. .+.++.+|..+.... ..
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA--KAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 36677755555 6777777765543 4578888875 3455555555655553 367788887653210 02
Q ss_pred CCcCEEEEcCCC
Q 012998 403 VKCDKVLLDAPC 414 (451)
Q Consensus 403 ~~fD~VlvD~PC 414 (451)
+..|.++..+--
T Consensus 88 g~iD~li~nAG~ 99 (306)
T PRK07792 88 GGLDIVVNNAGI 99 (306)
T ss_pred CCCCEEEECCCC
Confidence 568999887643
No 491
>PRK07806 short chain dehydrogenase; Provisional
Probab=36.68 E-value=1.8e+02 Score=27.15 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=48.3
Q ss_pred CCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCH-HHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINK-GRLRILNETAKLHQVNSVIRTIHADLRTFADN---------ST 402 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~-~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~ 402 (451)
+.+||-.|+ +|+.+.+++..+... ..|++++.+. ..++.+...++..+. .+.++.+|..+.... ..
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 567887765 567888887765433 4788887764 455555555555443 367788888764321 01
Q ss_pred CCcCEEEEcCC
Q 012998 403 VKCDKVLLDAP 413 (451)
Q Consensus 403 ~~fD~VlvD~P 413 (451)
+.+|.|+..+.
T Consensus 83 ~~~d~vi~~ag 93 (248)
T PRK07806 83 GGLDALVLNAS 93 (248)
T ss_pred CCCcEEEECCC
Confidence 35898887763
No 492
>PRK09242 tropinone reductase; Provisional
Probab=36.66 E-value=1.6e+02 Score=27.63 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=52.4
Q ss_pred CCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCC
Q 012998 334 GQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTV 403 (451)
Q Consensus 334 g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~ 403 (451)
|..+|=.|+ +|+.+..++..+.. +.+|+.++.+.+.++.+...+....-...+.++.+|..+... ...+
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 667777776 45677777765543 458999999998888877777655212347778888765321 0125
Q ss_pred CcCEEEEcCC
Q 012998 404 KCDKVLLDAP 413 (451)
Q Consensus 404 ~fD~VlvD~P 413 (451)
.+|.|+..+-
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 6899887553
No 493
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=36.64 E-value=75 Score=31.32 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=40.8
Q ss_pred hhhCCCC-CCeEEeecCCCchHHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCc
Q 012998 327 AVVDPQP-GQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405 (451)
Q Consensus 327 ~~l~~~~-g~~VLDlcagpG~kT~~la~~~~~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~f 405 (451)
..+...| ...|-|+|||-+-.+. ...-.|+++|+-. +.. .++.+|++++| ..+++.
T Consensus 173 ~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a--------------~~~--~V~~cDm~~vP-l~d~sv 229 (325)
T KOG3045|consen 173 RKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA--------------VNE--RVIACDMRNVP-LEDESV 229 (325)
T ss_pred HHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec--------------CCC--ceeeccccCCc-CccCcc
Confidence 3444444 4578999999876554 2245799999642 222 34668988865 457899
Q ss_pred CEEEE
Q 012998 406 DKVLL 410 (451)
Q Consensus 406 D~Vlv 410 (451)
|++++
T Consensus 230 DvaV~ 234 (325)
T KOG3045|consen 230 DVAVF 234 (325)
T ss_pred cEEEe
Confidence 99887
No 494
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.57 E-value=1.2e+02 Score=28.15 Aligned_cols=78 Identities=21% Similarity=0.137 Sum_probs=47.1
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---c--CCCCcC
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---N--STVKCD 406 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---~--~~~~fD 406 (451)
.+.++|=.| |+|+.+.+++..+... .+|+.++.+++.++.+.+. .+ ..++..|..+... . ..+.+|
T Consensus 8 ~~~~~lItG-a~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~---~~----~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 8 SGKSVLVTG-ASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE---TG----CEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC----CeEEEecCCCHHHHHHHHHHhCCCC
Confidence 456777444 4577777777665433 4899999998776544432 23 2345567654321 0 124689
Q ss_pred EEEEcCCCCCcc
Q 012998 407 KVLLDAPCSGLG 418 (451)
Q Consensus 407 ~VlvD~PCSg~G 418 (451)
.|+..+..+..+
T Consensus 80 ~vi~~ag~~~~~ 91 (245)
T PRK07060 80 GLVNCAGIASLE 91 (245)
T ss_pred EEEECCCCCCCC
Confidence 999988665443
No 495
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.18 E-value=1.7e+02 Score=28.30 Aligned_cols=77 Identities=14% Similarity=-0.028 Sum_probs=48.4
Q ss_pred CCCeEEeecCCC-chHHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cC
Q 012998 333 PGQSIVDCCAAP-GGKTLYMASCLSGQ-GLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NS 401 (451)
Q Consensus 333 ~g~~VLDlcagp-G~kT~~la~~~~~~-g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~ 401 (451)
.|..+|-.|++. +|.+..+|..+... ..|+.++.+....+.+++..+..|. ..++..|+.+... ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 367899999886 47777777766433 5788888776544444444444442 2356778765421 01
Q ss_pred CCCcCEEEEcC
Q 012998 402 TVKCDKVLLDA 412 (451)
Q Consensus 402 ~~~fD~VlvD~ 412 (451)
.+..|.++.++
T Consensus 83 ~g~iD~lVnnA 93 (271)
T PRK06505 83 WGKLDFVVHAI 93 (271)
T ss_pred hCCCCEEEECC
Confidence 25789888866
No 496
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.00 E-value=91 Score=29.71 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=47.4
Q ss_pred CCCeEEeecCC-CchHHHHHHHHcCCC-ceEEEEeCCH--HHHHHHHHHHHHcCCCceEEEEcCccccccc---------
Q 012998 333 PGQSIVDCCAA-PGGKTLYMASCLSGQ-GLVYAIDINK--GRLRILNETAKLHQVNSVIRTIHADLRTFAD--------- 399 (451)
Q Consensus 333 ~g~~VLDlcag-pG~kT~~la~~~~~~-g~V~AvDi~~--~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~--------- 399 (451)
.+..+|=.|+| ++|.+..++..+... ..|+.++.+. +.++.+.+. .+- .+.++..|..+...
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~---~~~--~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR---LPE--PAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh---cCC--CCcEEeCCCCCHHHHHHHHHHHH
Confidence 36789999986 688888888766543 5788888663 334433332 222 24567778765421
Q ss_pred cCCCCcCEEEEcC
Q 012998 400 NSTVKCDKVLLDA 412 (451)
Q Consensus 400 ~~~~~fD~VlvD~ 412 (451)
...+.+|.++.++
T Consensus 81 ~~~g~iD~li~nA 93 (256)
T PRK07889 81 EHVDGLDGVVHSI 93 (256)
T ss_pred HHcCCCcEEEEcc
Confidence 1125789988865
No 497
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=35.74 E-value=1.7e+02 Score=27.23 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=45.5
Q ss_pred CCCeEEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccccCCCCcCEEEEc
Q 012998 333 PGQSIVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411 (451)
Q Consensus 333 ~g~~VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~~~~~fD~VlvD 411 (451)
.|.+|+=+|.| ..+..+++.+.. +.+|+++|.++.++..+.+.+ |. ..+ +..++. ...+|+++
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~---g~----~~v--~~~~l~---~~~~Dv~v-- 90 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAELF---GA----TVV--APEEIY---SVDADVFA-- 90 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---CC----EEE--cchhhc---cccCCEEE--
Confidence 47788888886 677777776643 458999999998877765532 32 122 222221 13578775
Q ss_pred CCCCCcccc
Q 012998 412 APCSGLGVL 420 (451)
Q Consensus 412 ~PCSg~G~l 420 (451)
||...+++
T Consensus 91 -p~A~~~~I 98 (200)
T cd01075 91 -PCALGGVI 98 (200)
T ss_pred -eccccccc
Confidence 78777764
No 498
>PLN00015 protochlorophyllide reductase
Probab=35.69 E-value=1.1e+02 Score=30.02 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=46.4
Q ss_pred cCCCchHHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCCCcCEEE
Q 012998 341 CAAPGGKTLYMASCLSGQG--LVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCDKVL 409 (451)
Q Consensus 341 cagpG~kT~~la~~~~~~g--~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~~fD~Vl 409 (451)
..|+||.+..++..+...| .|+.++.+...++.+.+.+...+ ..+.++..|..+... ...+..|.++
T Consensus 3 TGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 3 TGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK--DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred eCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 4567888888887665444 78889988887766655543222 236677778765431 1124689999
Q ss_pred EcCC
Q 012998 410 LDAP 413 (451)
Q Consensus 410 vD~P 413 (451)
..+.
T Consensus 81 nnAG 84 (308)
T PLN00015 81 CNAA 84 (308)
T ss_pred ECCC
Confidence 8873
No 499
>PRK07832 short chain dehydrogenase; Provisional
Probab=35.55 E-value=1.5e+02 Score=28.33 Aligned_cols=75 Identities=16% Similarity=0.038 Sum_probs=46.4
Q ss_pred EEeecCCCchHHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCccccccc---------cCCCCcC
Q 012998 337 IVDCCAAPGGKTLYMASCLSG-QGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFAD---------NSTVKCD 406 (451)
Q Consensus 337 VLDlcagpG~kT~~la~~~~~-~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~---------~~~~~fD 406 (451)
+|=.| |+|+.+..+++.+.. +..|+.++.++..++...+.+...+-. .+.++..|..+... ...+..|
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 34344 457777777765543 357899999988887777766655533 24455677654321 0124589
Q ss_pred EEEEcCC
Q 012998 407 KVLLDAP 413 (451)
Q Consensus 407 ~VlvD~P 413 (451)
.|+..+-
T Consensus 81 ~lv~~ag 87 (272)
T PRK07832 81 VVMNIAG 87 (272)
T ss_pred EEEECCC
Confidence 9887653
No 500
>PRK06181 short chain dehydrogenase; Provisional
Probab=35.06 E-value=1.6e+02 Score=27.77 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=49.7
Q ss_pred CeEEeecCCCchHHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCcccccccc---------CCCC
Q 012998 335 QSIVDCCAAPGGKTLYMASCLS-GQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADN---------STVK 404 (451)
Q Consensus 335 ~~VLDlcagpG~kT~~la~~~~-~~g~V~AvDi~~~rl~~l~~~~~~~g~~~~I~~~~~Da~~~~~~---------~~~~ 404 (451)
.+||=.| |+|+.+..++..+- .+..|++++.++..++.+.+.+...+. .+.++.+|..+.... ..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG--EALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566444 56778888776543 346899999998887777776666553 477788888664311 0135
Q ss_pred cCEEEEcC
Q 012998 405 CDKVLLDA 412 (451)
Q Consensus 405 fD~VlvD~ 412 (451)
.|.|+..+
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 79888754
Done!