RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012998
(451 letters)
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 97.1 bits (240), Expect = 3e-23
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 5/221 (2%)
Query: 229 HPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHELS 288
HP W+++R K E+ ++ NN P LR N +R + L+ +
Sbjct: 1 HPSWLLKRLQKAYP-EQWQSIVEANNQRPPMWLRINRTH-HSRDSWLALLDEAGMKGFPH 58
Query: 289 LHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKT 348
+ +R++T V ++G VQD SA + + PQ G+ I+D CAAPGGKT
Sbjct: 59 ADYPDAVRLETP-APVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT 117
Query: 349 LYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKV 408
++ V A+DI++ RL + + K + + D++
Sbjct: 118 THILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRI 175
Query: 409 LLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDAA 449
LLDAPCS GV+ + D++W RR D+ EL LQ E+LDA
Sbjct: 176 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAI 216
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 96.2 bits (238), Expect = 8e-23
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 4/222 (1%)
Query: 227 YSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADLVMQLNLLKVPHE 286
+ R+ + G E AI++ R N+ K ++ DLV +LN +
Sbjct: 12 LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLPRCFRVNTLK-ISVQDLVKRLNKKGFQFK 69
Query: 287 LSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGG 346
E + ++ GL +Q+ S+ +DP+PG+ + D AAPGG
Sbjct: 70 RVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGG 129
Query: 347 KTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCD 406
KT Y+A + G++YA D+++ RLR V +VI + L N + D
Sbjct: 130 KTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNV--EFD 187
Query: 407 KVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELLDA 448
K+LLDAPC+G G + K + +WNR ++D++ + LQ LL+
Sbjct: 188 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEK 229
>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 140
Score = 74.3 bits (182), Expect = 1e-16
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+ + D+D L+ ++ G +R LD LI L + + + + ++ +G Y+++
Sbjct: 30 QKVSDKDKALLQELCFGVLRTLSQLDWLINKLMA--RPMTGKQRTVHYLIMVGLYQLLYT 87
Query: 165 DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLVLLKDNNSLPLPKLEGND 216
+PP+A + E V A RP L+NG+LR+ + L L + +D
Sbjct: 88 RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQ--FQRQQEEL-LAEFNASD 136
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 131
Score = 69.0 bits (168), Expect = 8e-15
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 97 ERTLGFRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRI 156
R K R + G ++D LI T + + ILR+
Sbjct: 29 TRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAHLRG-WTLDRLPAVDRAILRV 87
Query: 157 GFYEIVKLD-MPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
+E++ +P VVDE V+LAK + VNG+L +++
Sbjct: 88 SVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 131
>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
maritima [TaxId: 2336]}
Length = 141
Score = 61.7 bits (149), Expect = 3e-12
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 102 FRTKDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEI 161
+ D + + G +D LI + + + +LR+ YE+
Sbjct: 34 ILDETYDKKAKEDARRYIRGIKENLSMIDDLISRYLEKWS-LNRLSVVDRNVLRLATYEL 92
Query: 162 VKLDMPPYA-VVDENVRLAKVALRPGAGNLVNGILRKLV 199
+ P +DE + +AK +G VNGIL ++
Sbjct: 93 LFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 62.4 bits (150), Expect = 2e-11
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 21/194 (10%)
Query: 261 LRANSRKGVTRADLVMQLN------------------LLKVPHELSLHLDEFIRVKTGLQ 302
+R N+ K D+V L L + E +
Sbjct: 6 VRVNTLK-TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ-T 63
Query: 303 NVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVY 362
++ + L + G +QD ++ L ++DP PG ++D CAAPG KT ++A+ L QG ++
Sbjct: 64 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 123
Query: 363 AIDINKGRLRILNETAKLHQVNSVIRTIHADLRTF-ADNSTVKCDKVLLDAPCSGLGVLS 421
A D++ RL + V+ L +D + +LLD CSG G+ S
Sbjct: 124 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPS 183
Query: 422 KRADLRWNRRLEDM 435
++ + +
Sbjct: 184 RQLEEPGAGTPSPV 197
>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli
[TaxId: 562]}
Length = 139
Score = 59.0 bits (142), Expect = 3e-11
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 105 KDLDDRDLRLVTDIVGGTIRWRRYLDHLICLLCHDEKTFSSMEPLLLQILRIGFYEIVKL 164
+D+ D D+ +++ G YLD L+ + + + + +LRI YE+ K
Sbjct: 38 QDVKDVDVLYFRELLAGVATNTAYLDGLMK--PYLSRLLEELGQVEKAVLRIALYELSKR 95
Query: 165 -DMPPYAVVDENVRLAKVALRPGAGNLVNGILRKLV 199
D+P ++E + LAK + VNG+L K
Sbjct: 96 SDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKAA 131
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 50.4 bits (120), Expect = 1e-07
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 2/132 (1%)
Query: 286 ELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPG 345
EL + FI + +++ + + A ++ +PG I++ G
Sbjct: 40 ELIVSGKSFIVSDFSPMYFGR--VIRRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSG 97
Query: 346 GKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKC 405
+ Y+ L+G+G + ++ ++ L+ + +RT +D+ F +
Sbjct: 98 NMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDA 157
Query: 406 DKVLLDAPCSGL 417
+ P + +
Sbjct: 158 VIADIPDPWNHV 169
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 46.6 bits (110), Expect = 2e-06
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTI 390
+PG+S++ A G +++ + +G ++ I+ + LR L + + I
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130
Query: 391 HADLRTFADNSTVKCDKVLLDAPCSG 416
+ K D + D
Sbjct: 131 ATKPEEYRAL-VPKVDVIFEDVAQPT 155
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 45.9 bits (108), Expect = 2e-06
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 2/86 (2%)
Query: 329 VDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIR 388
+ + + ++ AA G ++A + +G++YA++ + L E + N +
Sbjct: 52 LKLRGDERVLYLGAASGTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPL 109
Query: 389 TIHADLRTFADNSTVKCDKVLLDAPC 414
A K D + D
Sbjct: 110 LFDASKPWKYSGIVEKVDLIYQDIAQ 135
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 45.4 bits (107), Expect = 6e-06
Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
+ G + + A +V D PG +++ A G TL + + G V + +
Sbjct: 72 SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA 131
Query: 369 GRLRIL--NETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLD 411
N + Q R + +DL + D+ +LD
Sbjct: 132 DHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRAVLD 175
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 44.8 bits (105), Expect = 1e-05
Identities = 14/85 (16%), Positives = 41/85 (48%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
L+K G + ++++++D PG ++++ + GG +L+++ + QG V + ++ K
Sbjct: 74 LMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK 133
Query: 369 GRLRILNETAKLHQVNSVIRTIHAD 393
+ + K + + + +
Sbjct: 134 DHHDLAKKNYKHWRDSWKLSHVEEW 158
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga
maritima [TaxId: 2336]}
Length = 266
Score = 43.6 bits (102), Expect = 2e-05
Identities = 15/105 (14%), Positives = 35/105 (33%)
Query: 309 LLKEGLCAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
+K V + + + ++D + G I+D G +A + G V+A + +
Sbjct: 79 NMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE 138
Query: 369 GRLRILNETAKLHQVNSVIRTIHADLRTFADNSTVKCDKVLLDAP 413
++ + + D+ D V + + P
Sbjct: 139 EFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDP 183
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 40.5 bits (94), Expect = 2e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 326 VAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+ V+ + I+ A+ G ++A +VYAI+ +R L + +
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELLDACAERENII 125
Query: 386 VIRTIHADLRTFADNS 401
I + +A+
Sbjct: 126 PILGDANKPQEYANIV 141
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 39.4 bits (91), Expect = 3e-04
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLH-QV 383
V+ + P+ + I+DC GG + + G + ID++ LRI E K
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 384 NSVIRTIHADLRTFADNSTV-KCDKVLLDAPCS 415
S+ + + + + K D +L+D S
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVS 106
>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella
flexneri [TaxId: 623]}
Length = 250
Score = 38.8 bits (90), Expect = 7e-04
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 7/124 (5%)
Query: 331 PQPGQSIVDCCAAPGGKTLYMAS-----CLSGQGLVYAIDINKGRLRILNETAKLHQVNS 385
+VD A G +AS + + V A ++ G R + +
Sbjct: 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145
Query: 386 VIRTIHADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDEL 445
++ IHA T + T + V LD + R + + + D L
Sbjct: 146 RLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKE--MRVFQSLVGPDLDADGL 203
Query: 446 LDAA 449
L+ A
Sbjct: 204 LEPA 207
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 36.7 bits (84), Expect = 0.002
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVN 384
+ ++ +PG VD G + G V +D + + + L +
Sbjct: 10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVAR-AKGLHLPGLT 65
Query: 385 SVIRTIHADLRTFADNSTVKCDKVLLDAPCS 415
V R A + D +L D S
Sbjct: 66 VVQGNFRHLKRHLAALGVERVDGILADLGVS 96
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 36.3 bits (83), Expect = 0.003
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+PG ++VD AAPGG + Y+ + + G+G + A D+ ++ + + R
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-----MDPIVGVDFLQGDFRDEL 75
Query: 392 ADLRTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDM 435
K V++ + R +E
Sbjct: 76 VMKALLERVGDSKVQ-VVMSDMAPNMSGTPAVDIPRAMYLVELA 118
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 35.2 bits (80), Expect = 0.008
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQV 383
L++ + +P VD GG TL +A VYAID N + + H +
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 384 NSVIRTIHADL 394
+ + D
Sbjct: 81 GDNVTLMEGDA 91
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 34.5 bits (78), Expect = 0.020
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
+ G S++D GG L G G Y +DI + + A+ + +
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA 80
Query: 392 ADLRTFADNSTVKCDKV 408
D + + D +
Sbjct: 81 QDSYGRHMDLGKEFDVI 97
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 33.4 bits (75), Expect = 0.041
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 321 SAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINK 368
S GL++ + + ++D A G L + + +D K
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATK 48
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 33.1 bits (75), Expect = 0.065
Identities = 37/292 (12%), Positives = 78/292 (26%), Gaps = 38/292 (13%)
Query: 161 IVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGI--LRKLVLLKDNNSLPLPKL----EG 214
KL ++ E ++ + + N + + KL+ LP P E
Sbjct: 61 TAKLQSILFSNYMEEYKVDF----KRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKET 116
Query: 215 NDRAQARALATIYSHPVWMVRRWTKYLGQEEAIKLMVWNNSDPSFSLRANSRKGVTRADL 274
+ S V Y + I+ + + + R+
Sbjct: 117 ILPDLNASFDN--SDTKGFVNAINLY---NKMIREIPRQRIID----HLETIDKIPRS-F 166
Query: 275 VMQLNLLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGLCAVQDESAGLVVAVVDPQPG 334
+ + + ++ K V LL L V + + G
Sbjct: 167 IHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGE-LLPNFLSDVYQQ--------CQLKKG 217
Query: 335 QSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIHADL 394
+ +D + G + A G L + +I + L R +
Sbjct: 218 DTFMDLGSGVGNCVVQAAL-ECGCALSFGCEIMDDASDL----TILQYEELKKRCKLYGM 272
Query: 395 RTFADNSTVKCDKVLLDAPCSGLGVLSKRADLRWNRRLEDMEELKILQDELL 446
R ++K V + + + D+ E+L +++L
Sbjct: 273 RLNNVEFSLKKSFVDNNRVAELIP----QCDVILVNNFLFDEDLNKKVEKIL 320
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 32.2 bits (73), Expect = 0.093
Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 6/86 (6%)
Query: 332 QPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRILNETAKLHQVNSVIRTIH 391
P +VD GG + Y + + V + G + N V
Sbjct: 65 TPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKG-GPGHEEPIPMSTYGWNLVRLQSG 122
Query: 392 ADLRTFADNSTVKCDKVLLD-APCSG 416
D+ +CD +L D S
Sbjct: 123 VDVFFIPPE---RCDTLLCDIGESSP 145
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 32.3 bits (72), Expect = 0.093
Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 12/52 (23%)
Query: 326 VAVVDPQ----------PGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367
+ V P P + + P KT+++ V+ +
Sbjct: 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE--HENNAVWKFEWQ 298
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 31.3 bits (69), Expect = 0.24
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 2/78 (2%)
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRIL 374
E ++ GK L A S VY I +G L
Sbjct: 256 VFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315
Query: 375 NETAKLHQVNSVIRTIHA 392
A V ++A
Sbjct: 316 GRYAVGQGPMWV--VVNA 331
>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 124
Score = 28.5 bits (63), Expect = 0.66
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 316 AVQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
AV+ +S LV +PG S+ C G Q
Sbjct: 1 AVKLQQSGPELV------RPGTSVKLSCKTSGYIFTSYWIHWLKQ 39
>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 1 [TaxId:
10090]}
Length = 109
Score = 28.1 bits (62), Expect = 0.86
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ ES GLV QP S+ CAA G A Q
Sbjct: 2 VQLQESGGGLV------QPRGSLKLSCAASGFTFNTDAMNWVRQ 39
>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 116
Score = 27.8 bits (61), Expect = 1.1
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 8/45 (17%)
Query: 316 AVQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
AVQ ++S GLV +P Q++ C G Q
Sbjct: 1 AVQLEQSGPGLV------RPSQTLSLTCTVSGTSFDDYYWTWVRQ 39
>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId:
9606]}
Length = 120
Score = 27.8 bits (61), Expect = 1.4
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ + AGL+ +P +++ CA GG Q
Sbjct: 2 VQLQQWGAGLL------KPSETLSLTCAVYGGSFSDYYWSWIRQ 39
>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId:
10090]}
Length = 118
Score = 27.0 bits (59), Expect = 2.2
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
V+ ES GLV QPG S+ CAA G Q
Sbjct: 2 VKLLESGGGLV------QPGGSLKLSCAASGFDFSKYWMSWVRQ 39
>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
9606]}
Length = 119
Score = 27.0 bits (59), Expect = 2.5
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGG--KTLYMASC 354
VQ +S A + +PG ++ C A G YM
Sbjct: 2 VQLVQSGAEVK------KPGATVKISCKASGYTFSDFYMYWV 37
>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId:
10090]}
Length = 118
Score = 27.0 bits (59), Expect = 2.5
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
++ E+ LV +PG S+ C A G Q
Sbjct: 2 LKLVETGGDLV------KPGGSLTLSCEASGFTLRTYGMSWVRQ 39
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 27.8 bits (60), Expect = 2.5
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 319 DESAGLVVAVVD-PQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRL 371
D V V+ G + + APGG+ Y + + ID+ G
Sbjct: 17 DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGET 68
>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable
domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 117
Score = 26.9 bits (59), Expect = 2.5
Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 23/74 (31%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPG---------------GKTLYMASCLSGQG 359
V+ ES GLV QP Q++ C G GK L + +S G
Sbjct: 2 VKLLESGPGLV------QPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGG 55
Query: 360 LVYAIDINKGRLRI 373
Y K RL I
Sbjct: 56 SPYYNSALKSRLSI 69
>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
9606]}
Length = 126
Score = 27.0 bits (59), Expect = 2.6
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ ES GLV QPG+S+ CAA G A Q
Sbjct: 2 VQLVESGGGLV------QPGRSLRLSCAASGFTFNDYAMHWVRQ 39
>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh
{Llama (Lama glama) [TaxId: 9844]}
Length = 127
Score = 27.0 bits (59), Expect = 2.6
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ ES GLV Q G S+ C A G Q
Sbjct: 2 VQLQESGGGLV------QAGDSLKLSCEASGDSIGTYVIGWFRQ 39
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2
{Pea seedling (Pisum sativum) [TaxId: 3888]}
Length = 108
Score = 26.7 bits (59), Expect = 2.7
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 173 DENVRLAKVA--LRPGAGN-----------LVNGILRKLVLLKDNNSLPLPKLEGND 216
++NVR ++ ++ N + + L K+V D + +P E +
Sbjct: 50 EKNVRTVRLDCFMKESTVNIYVRPITGITIVADLDLMKIVEYHDRDIEAVPTAENTE 106
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 27.6 bits (60), Expect = 2.7
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 318 QDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDIN 367
+E + V+ +PG I+D + G A G +
Sbjct: 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL 67
>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 126
Score = 26.6 bits (58), Expect = 3.3
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ S G V Q GQS+ CA G + Q
Sbjct: 1 VQLQASGGGSV------QAGQSLRLSCATSGATSSSNCMGWFRQ 38
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 27.1 bits (59), Expect = 3.4
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 20/118 (16%)
Query: 268 GVTRADLVMQLN-------------LLKVPHELSLHLDEFIRVKTGLQNVIQAGLLKEGL 314
G + ++L+ L +L + ++ +
Sbjct: 5 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIGFQATISAPHMHA 64
Query: 315 CAVQDESAGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLR 372
A++ L G +D + G T A + G V ID K +
Sbjct: 65 YALELLFDQL-------HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD 115
>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain,
VHh {Camel (Camelus dromedarius) [TaxId: 9838]}
Length = 124
Score = 26.3 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ ES G V Q G S+ CAA G Q
Sbjct: 1 VQLVESGGGSV------QAGGSLRLSCAASGSTDSIEYMTWFRQ 38
>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable
domain, VH {Human (Homo sapiens), cluster 3 [TaxId:
9606]}
Length = 127
Score = 26.2 bits (57), Expect = 4.0
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 8/44 (18%)
Query: 317 VQ-DES-AGLVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQ 358
VQ +S G+V QPG+S+ C++ G A Q
Sbjct: 2 VQLVQSGGGVV------QPGRSLRLSCSSSGFIFSSYAMYWVRQ 39
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 26.9 bits (58), Expect = 4.5
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 325 VVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAIDINKGRLRI 373
++ + + + ++D G A + V A D+ + L++
Sbjct: 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKV 52
>d1utya_ b.147.1.1 (A:) Nonstructural protein NS2 {Bluetongue virus
[TaxId: 40051]}
Length = 153
Score = 26.3 bits (58), Expect = 5.1
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 67 RLMRIQFGGAFADLLNKKGKGSG--------DNEMGYVERTLGFRTKDLDDRDLR 113
R+Q+ G D K KG G D + + G + D R+LR
Sbjct: 97 MATRVQYNGVMVDAEIKYCKGMGIVQPYMRNDFDRNEMPDLPGVMRSNYDIRELR 151
>d1ut1a_ b.2.3.6 (A:) DraA/Afimbrial adhesin Afa-III {Escherichia
coli [TaxId: 562]}
Length = 140
Score = 26.0 bits (57), Expect = 5.2
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 180 KVALRPGAGNLVNGILRKLVLLKDNN 205
+VAL+ N G K L+ DNN
Sbjct: 56 QVALKADTDNFEQG---KFFLISDNN 78
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 26.8 bits (58), Expect = 5.4
Identities = 11/42 (26%), Positives = 12/42 (28%)
Query: 324 LVVAVVDPQPGQSIVDCCAAPGGKTLYMASCLSGQGLVYAID 365
LV V IVD G L + L ID
Sbjct: 18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGID 59
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 26.9 bits (58), Expect = 6.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 157 GFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNLVNGILR 196
FY K+ + + KVAL PG+ L G +R
Sbjct: 313 AFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVR 352
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.5 bits (56), Expect = 6.6
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 13/63 (20%)
Query: 173 DENVRLAKV--ALRPGAGN-----------LVNGILRKLVLLKDNNSLPLPKLEGNDRAQ 219
++ RL KV L G GN +V+ +K+V +++ +P+P +
Sbjct: 52 KQDARLLKVISYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGR 111
Query: 220 ARA 222
R
Sbjct: 112 DRV 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,597,465
Number of extensions: 73427
Number of successful extensions: 260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 51
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)