BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013000
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound 7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 292 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 346
DA+ S + FE+ R V +E V S H A+++ + RV L GDAAHT+ P
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 347 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
G G+N G G A+ L +A + A G LL YE ER+P I +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 292 DATLSAKECFEVPPRVVKLASERMVFPLSLKH-----ANNYVSKRVVLIGDAAHTVHPLA 346
DA+ S + FE+ R V +E V S H A+++ + RV L GDAAHT+ P
Sbjct: 266 DASKSTMDSFELVRRAVAFDTEIEVLSDSEWHLTHRVADSFSAGRVFLTGDAAHTLSPSG 325
Query: 347 GQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
G G+N G G A+ L +A + A G LL YE ER+P I +
Sbjct: 326 GFGMNTGIGSAADLGWKLAATLRGWAGPG---LLATYEEERRPVAITSL 371
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 86/223 (38%), Gaps = 39/223 (17%)
Query: 170 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 229
SL + VVG DGG+S VR+ AGF G S S+ + + + +P G +
Sbjct: 152 SLTTRYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCEITPRPIGETVPLGMVMS 211
Query: 230 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHP-KSISSGSVDMFSW 288
P+GD I+ A GP P + +++ +W
Sbjct: 212 APLGDGVDRIIVCERGAPARRRT-------------------GPPPYQEVAA------AW 246
Query: 289 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 348
R L+ ++ P V F + + Y RV+L GD+AH P GQ
Sbjct: 247 QR----LTGQDISHGEPVWVS------AFGDPARQVSAYRRGRVLLAGDSAHVHLPAGGQ 296
Query: 349 GVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 391
G+N+ D+ L +A AV + A LL Y ER P
Sbjct: 297 GMNVSVQDSVNLGWKLA---AVVSGRAPAGLLDTYHEERHPVG 336
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 335
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKAETTK-LDSWTRGKVALV 286
Query: 336 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3FMW|A Chain A, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|B Chain B, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus.
pdb|3FMW|C Chain C, The Crystal Structure Of Mtmoiv, A Baeyer-Villiger
Monooxygenase From The Mithramycin Biosynthetic Pathway
In Streptomyces Argillaceus
Length = 570
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 83/222 (37%), Gaps = 40/222 (18%)
Query: 171 LYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALL 230
+ A+ VG DGG+S VR LA + G + A+I V +R +P
Sbjct: 194 VRARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYV-------TTPEREVPR------ 240
Query: 231 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG---SVDMFS 287
W P D + +L + G GP S S+G + D
Sbjct: 241 ---------RWERTP------------DGILVLAFPPEGGLGPGWSSSSTGHSPAADEGP 279
Query: 288 WFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAG 347
D + P + + S F + + A Y S RV+L GDAAH P+ G
Sbjct: 280 VTLEDLGAAVARVRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVLLAGDAAHVHFPIGG 339
Query: 348 QGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP 389
QG+N G DA L +A + G LL Y ER P
Sbjct: 340 QGLNTGLQDAVNLGWKLAARV---RGWGSEELLDTYHDERHP 378
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 48/279 (17%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFE-VPPRVVKLASERMVF--PLSLKHANNYVSKRV 332
+ SS +D+ W E F + P +++ A + +++ +V
Sbjct: 234 RG-SSVPIDLEVWV---------EMFPFLEPCLIEAAKLKTARYDKFETTKLDSWTRGKV 283
Query: 333 VLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 392
L+GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 284 ALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITD 337
Query: 393 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 338 RCQALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 335
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 336 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 231
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 232 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 269
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 335
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 270 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 336 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 323 GDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 409
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 109/276 (39%), Gaps = 42/276 (15%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 172 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRXKKELGHGE 231
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN + W P+ S NE++ ++ + A D P
Sbjct: 232 W---------------DNTID-XWNFWPRVQRILYSPCNENELYLGLXAPAAD------P 269
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 335
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 270 RG-SSVPIDLEVWVEXFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 322
Query: 336 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
GDAAH P QG +A +LS+ + EG +V L +E +P
Sbjct: 323 GDAAHAXCPALAQGAGCAXVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 376
Query: 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N AA A+Y PL+R
Sbjct: 377 ALSGDYAANRSLSKG--NXFTPAALEAARY-DPLRR 409
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 265 KELIHATLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 318
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 319 VDALILSDNLADG 331
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 39/73 (53%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + +IGDAAH + P AGQGVN G
Sbjct: 285 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITMIGDAAHLMPPFAGQGVNSGL 338
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 339 VDALILSDNLADG 351
>pdb|1PN0|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1PN0|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 665
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 93/245 (37%), Gaps = 44/245 (17%)
Query: 170 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-----NAIICTVEHNKENYCAWQRFLPA 224
+++ K V+G DGG S VR GF+ G +A+ + + + CA +
Sbjct: 216 TVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHS-AES 274
Query: 225 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDF---VKILNHALDYGYGPHPKSISSG 281
G I ++P +N + + A ++ F V I N + HP +
Sbjct: 275 GSIMIIPRENNLVRFYVQLQAR-AEKGGRVDRTKFTPEVVIANAKKIF----HPYTFDVQ 329
Query: 282 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHT 341
+D F+ + + RV + S+ +RV + GDA HT
Sbjct: 330 QLDWFT------------AYHIGQRVTEKFSK---------------DERVFIAGDACHT 362
Query: 342 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF 401
P AGQG+N D L + V + +LK YE ER+P ++ F
Sbjct: 363 HSPKAGQGMNTSMMDTYNLGWKLG---LVLTGRAKRDILKTYEEERQPFAQALIDFDHQF 419
Query: 402 QKAYS 406
+ +S
Sbjct: 420 SRLFS 424
>pdb|2X3N|A Chain A, Crystal Structure Of Pqsl, A Probable Fad-Dependent
Monooxygenase From Pseudomonas Aeruginosa
Length = 399
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 96/238 (40%), Gaps = 44/238 (18%)
Query: 162 KLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAII-------CTVEHNKE 213
++ L+DG L ++VVGADG S VR L Y ++ C E N+
Sbjct: 144 QVRLNDGRVLRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCVAERNR- 202
Query: 214 NYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGP 273
Y Q G PIG + + +V + P++ + + + D + L L G
Sbjct: 203 LYVDSQ----GGLAYFYPIGFDRARLVVSF-PRE--EARELMADTRGESLRRRLQRFVGD 255
Query: 274 HPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVV 333
+ +V S F+G P+ + + Y + V
Sbjct: 256 ESAE-AIAAVTGTSRFKG-------------------------IPIGYLNLDRYWADNVA 289
Query: 334 LIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 391
++GDA H VHP+ GQG+NL DAS L+ + + + +A L Y+AER P N
Sbjct: 290 MLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDA--LAGYQAERFPVN 345
>pdb|2QA1|A Chain A, Crystal Structure Of Pgae, An Aromatic Hydroxylase
Involved In Angucycline Biosynthesis
Length = 500
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 79/219 (36%), Gaps = 39/219 (17%)
Query: 170 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIAL 229
+L A +VG DGG+S VR+ AGF G + + + ++ + LP G + +
Sbjct: 151 TLRAAYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVELQPRMIGETLPGGMVMV 210
Query: 230 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF-SW 288
P+ + I+ + G P + ++ +W
Sbjct: 211 GPLPGGITRII-------------------------VCERGTPPQRRETPPSWHEVADAW 245
Query: 289 FRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQ 348
R L+ + P V F + + Y RV+L GD+AH P GQ
Sbjct: 246 KR----LTGDDIAHAEPVWVS------AFGNATRQVTEYRRGRVILAGDSAHIHLPAGGQ 295
Query: 349 GVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 387
G+N DA L + AV LL Y +ER
Sbjct: 296 GMNTSIQDAVNLGWKLG---AVVNGTATEELLDSYHSER 331
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + IGDAAH P AGQGVN G
Sbjct: 265 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 318
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 319 VDALILSDNLADG 331
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 298 KECFEVPPRVVKLASERMVFPLSLKHANNYVSKR---VVLIGDAAHTVHPLAGQGVNLGF 354
KE V LA+ +FPL + SKR + IGDAAH P AGQGVN G
Sbjct: 286 KELIHTTLSFVGLATR--IFPLEKP----WKSKRPLPITXIGDAAHLXPPFAGQGVNSGL 339
Query: 355 GDASTLSRIIAEG 367
DA LS +A+G
Sbjct: 340 VDALILSDNLADG 352
>pdb|1BGN|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 269 Replaced By Thr
(R269t), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL+
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLTSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PBB|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBC|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
pdb|1PBD|A Chain A, Crystal Structures Of Wild-Type P-Hydroxybenzoate
Hydroxylase Complexed With 4-Aminobenzoate,
2,4-Dihydroxybenzoate And 2-Hydroxy- 4-Aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-Aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase
Complexed With Its Reaction Product
3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose
Displaces Fad In The Active Site Of P-Hydroxybenzoate
Hydroxylase. An X-Ray Crystallographic Investigation
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys
(r44k), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CC6|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate
Hydroxylase. Implications For Nadph Recognition And
Structural Stability
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 24/178 (13%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDD---FVKILNHALD 268
E ++R P G + LL S+ +++ +P+ + C + FV++
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSATRSRYFVQV------ 225
Query: 269 YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNY 327
P + + S + F W L A+ EV ++V S E+ + PL
Sbjct: 226 ----PLSEKVEDWSDERF-W----TELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPM 276
Query: 328 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 277 QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1CJ3|A Chain A, Mutant Tyr38glu Of Para-Hydroxybenzoate Hydroxylase
Length = 392
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 18/175 (10%)
Query: 213 ENYCAWQRFLPAGPIALLPIGDNFSN-IVWTMNPKDASDCKSMNEDDFVKILNHALDYGY 271
E ++R P G + LL S+ +++ +P+ + C + + Y
Sbjct: 172 ERLKVFERVYPFGWLGLLADTPPVSHELIYANHPRGFALCSQRSA-------TRSRYYVQ 224
Query: 272 GPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSK 330
P + + S + F W A L A EV ++V S E+ + PL
Sbjct: 225 VPLTEKVEDWSDERF-WTELKARLPA----EVAEKLVTGPSLEKSIAPLRSFVVEPMQHG 279
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
R+ L GDAAH V P +G+NL D STL R++ + G LL++Y A
Sbjct: 280 RLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm
Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph
And Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-Aminobenzoate At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G+NL
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 87/223 (39%), Gaps = 36/223 (16%)
Query: 162 KLDLSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSY-SQNAIICTVEHNKENYCAWQ 219
++ SDGT A V+GADGG S VR+ L G + T Y + ++ E + W
Sbjct: 131 QMRFSDGTKAEANWVIGADGGASVVRKRLLGIEPTYAGYVTWRGVLQPGEVADD---VWN 187
Query: 220 RF--------LPAGPIALLPIGDNFS------NIVWTMNPKDASDCKSMNED-DFVKILN 264
F L G + PI + N W N + D + D +++
Sbjct: 188 YFNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPT 247
Query: 265 HALDYGYGPHP-KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKH 323
+ PH + S +F FR D L+A F V + ++ V
Sbjct: 248 SVHNNSLNPHNLRQFHSKGESLFKPFR-DLVLNASSPF------VTVVADATV------- 293
Query: 324 ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366
+ V RV+LIGDAA T P A G DA TL+ + +
Sbjct: 294 -DRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK 335
>pdb|1FOH|A Chain A, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|B Chain B, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|C Chain C, Phenol Hydroxylase From Trichosporon Cutaneum
pdb|1FOH|D Chain D, Phenol Hydroxylase From Trichosporon Cutaneum
Length = 664
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 44/245 (17%)
Query: 170 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-----NAIICTVEHNKENYCAWQRFLPA 224
+++ K V+G DGG S VR GF+ G +A+ + + + CA +
Sbjct: 215 TVHCKYVIGCDGGHSWVRRTLGFEMIGEQTDYIWGVLDAVPASNFPDIRSRCAIHS-AES 273
Query: 225 GPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDF---VKILNHALDYGYGPHPKSISSG 281
G I ++P +N + + A ++ F V I N + HP +
Sbjct: 274 GSIMIIPRENNLVRFYVQLQAR-AEKGGRVDRTKFTPEVVIANAKKIF----HPYTFDVQ 328
Query: 282 SVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHT 341
+D F+ + + RV + S+ +RV + GDA HT
Sbjct: 329 QLDWFT------------AYHIGQRVTEKFSK---------------DERVFIAGDACHT 361
Query: 342 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGF 401
P AGQG+N D L + G+ + + +LK YE ER ++ F
Sbjct: 362 HSPKAGQGMNTSMMDTYNLGWKL--GLVLTGR-AKRDILKTYEEERHAFAQALIDFDHQF 418
Query: 402 QKAYS 406
+ +S
Sbjct: 419 SRLFS 423
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 113/276 (40%), Gaps = 42/276 (15%)
Query: 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCA 217
+ +L L G L A L+VGADG S+VR+ GFK W I V K+ +
Sbjct: 136 VGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE 195
Query: 218 WQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKS-MNEDD-FVKILNHALDYGYGPHP 275
W DN ++ W P+ S NE++ ++ ++ A D P
Sbjct: 196 W---------------DNTIDM-WNFWPRVQRILYSPCNENELYLGLMAPAAD------P 233
Query: 276 KSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLI 335
+ SS +D+ W L + C KL + R + K +++ +V L+
Sbjct: 234 RG-SSVPIDLEVWVEMFPFL--EPCL---IEAAKLKTARYDKYETTK-LDSWTRGKVALV 286
Query: 336 GDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395
GDAAH + P QG +A +LS+ + EG +V L +E +P
Sbjct: 287 GDAAHAMAPALAQGAGCAMVNAFSLSQDLEEGSSV------EDALVAWETRIRPITDRCQ 340
Query: 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKR 431
A+ + S+ G N+ AA A+Y PL+R
Sbjct: 341 ALSGDYAANRSLSKG--NMFTPAALEAARY-DPLRR 373
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase
Phzs From Pseudomonas Aeruginosa. Northeast Structural
Genomics Consortium Target Par240
Length = 410
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 389
R+ L+GDAAH ++P+ G + D L A +A AD+ A+ L++YE R+P
Sbjct: 304 RITLLGDAAHLMYPMGANGASQAILDGIEL----AAALARNADV--AAALREYEEARRPT 357
Query: 390 ANIVMMA 396
AN +++A
Sbjct: 358 ANKIILA 364
>pdb|1PXA|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 295 LSAKECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLG 353
L A+ EV ++V S E+ + PL R+ L GDAAH V P +G++L
Sbjct: 243 LKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLDLA 302
Query: 354 FGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385
D STL R++ + G LL++Y A
Sbjct: 303 ASDVSTLYRLLLKAYRE----GRGELLERYSA 330
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 94/239 (39%), Gaps = 39/239 (16%)
Query: 170 SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-----NAIICTVEHNKENYCAWQRFLPA 224
++ A+ VVG DG +S VR G + G S +Q + + T + A Q
Sbjct: 197 TVQARYVVGCDGARSNVRRAIGRQLVGDSANQAWGVMDVLAVTDFPDVRYKVAIQS--EQ 254
Query: 225 GPIALLPI-GDNFSNIVWTMNPKDASD---CKSMNEDDFVKILNHALDYGYGPHPKSISS 280
G + ++P G + M+ DA + +++ + + L HP +
Sbjct: 255 GNVLIIPREGGHLVRFYVEMDKLDADERVASRNITVEQLIATAQRVL------HPYKLEV 308
Query: 281 GSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAH 340
+V +S + + + C + V +A+ P RV + GDA H
Sbjct: 309 KNVPWWSVYE----IGQRICAKYDDVVDAVATPDSPLP------------RVFIAGDACH 352
Query: 341 TVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399
T P AGQG+N D+ L +A AV LL Y +ER+ +V ++D
Sbjct: 353 THSPKAGQGMNFSMQDSFNLGWKLA---AVLRKQCAPELLHTYSSERQ---VVAQQLID 405
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs
Length = 402
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 331 RVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKP- 389
R+ L+GDAAH +P G + D L A +A AD+ A+ L++YE R+P
Sbjct: 304 RITLLGDAAHLXYPXGANGASQAILDGIEL----AAALARNADV--AAALREYEEARRPT 357
Query: 390 ANIVMMA 396
AN +++A
Sbjct: 358 ANKIILA 364
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 34/224 (15%)
Query: 165 LSDGTSLYAKLVVGADGGKSRVRE-LAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLP 223
+DG+S L++ ADG S +R + GF T + Y W +
Sbjct: 162 FTDGSSASGDLLIAADGSHSALRPWVLGF--------------TPQRRYAGYVNWNGLVE 207
Query: 224 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSV 283
AL P GD ++ V ++ F + L G ++ +
Sbjct: 208 IDE-ALAP-GDQWTTFV---GEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRA--- 259
Query: 284 DMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVH 343
D+ +F G A K + P+ + P S V RV L+GDA H+
Sbjct: 260 DLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFS-----RLVRGRVALLGDAGHSTT 314
Query: 344 PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 387
P GQG DA L + + + A+ L++YEA+R
Sbjct: 315 PDIGQGGCAAMEDAVVLGAVFRQTRDI------AAALREYEAQR 352
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 325 NNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYE 384
+ V RV L+GDA H+ P GQG DA L + + + A+ L++YE
Sbjct: 296 SRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVLGAVFRQTRDI------AAALREYE 349
Query: 385 AER 387
A+R
Sbjct: 350 AQR 352
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 307 VVKLASERMVFPLSLK---HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRI 363
+V+ + + PL L+ H + S V L+GDA H P G G N DA L++
Sbjct: 285 LVQQSDXENISPLHLRSXPHLLPWKSSTVTLLGDAIHNXTPXTGSGANTALRDALLLTQK 344
Query: 364 IAEGIAVGADIGEASLLKKYEAE-RKPANIVMMAVLDGFQKA 404
+A + ++ +A + YE + R AN ++ L Q A
Sbjct: 345 LASVASGHEELVKA--ISDYEQQXRAYANEIVGISLRSAQNA 384
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 193 KTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCK 252
KT + +NA++ +EHN +N+C + +P P +++ + D + +
Sbjct: 221 KTLHAIFKRNAVLNMLEHNYKNWCTLNKQVPVN----FPFKKYCLDVLEHL---DMCEKR 273
Query: 253 SMN--EDDFVKIL 263
S+N E+DF+K+L
Sbjct: 274 SINLDENDFLKLL 286
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 172 YAKLVVGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPA 224
+A + DG + +E F T G W Y+ +A +E E + W R +
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Query: 225 GPIALL-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 266
P LL + + + I+WT + + K+ + E+ F +L A
Sbjct: 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 172 YAKLVVGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPA 224
+A + DG + +E F T G W Y+ +A +E E + W R +
Sbjct: 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214
Query: 225 GPIALL-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 266
P LL + + + I+WT + + K+ + E+ F +L A
Sbjct: 215 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 262
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 172 YAKLVVGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPA 224
+A + DG + +E F T G W Y+ +A +E E + W R +
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Query: 225 GPIALL-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 266
P LL + + + I+WT + + K+ + E+ F +L A
Sbjct: 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 30/78 (38%)
Query: 52 ATISFFKEIGAWQYVQQHRHAYFDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHS 111
T F E G + +++ + + TG+ K R + E L E+ V+
Sbjct: 273 GTFEFLYENGRFYFIEMNTRVQVEHPVSEMVTGVDIVKEMLRIASGEKLSIRQEDVVIRG 332
Query: 112 SLLSCMQNTEFQKTIYPS 129
L C N E KT PS
Sbjct: 333 HALECRINAEDPKTFMPS 350
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 172 YAKLVVGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPA 224
+A + DG + +E F T G W Y+ +A +E E + W R +
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Query: 225 GPIALL-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 266
P LL + + + I+WT + + K+ + E+ F +L A
Sbjct: 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 172 YAKLVVGADGGKSRVRELAGFKTTG-------WSYSQNAIICTVEHNKENYCAWQRFLPA 224
+A + DG + +E F T G W Y+ +A +E E + W R +
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Query: 225 GPIALL-----PIGDNFSNIVWTMNPKDASDCKS-MNEDDFVKILNHA 266
P LL + + + I+WT + + K+ + E+ F +L A
Sbjct: 213 SPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,313,471
Number of Sequences: 62578
Number of extensions: 543491
Number of successful extensions: 1225
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 82
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)