Query 013000
Match_columns 451
No_of_seqs 140 out of 1668
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:30:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08013 oxidoreductase; Provi 100.0 4.4E-51 9.5E-56 405.2 42.2 383 1-446 13-398 (400)
2 PRK08850 2-octaprenyl-6-methox 100.0 3.8E-50 8.3E-55 399.5 41.4 382 1-446 14-399 (405)
3 PRK06617 2-octaprenyl-6-methox 100.0 2E-49 4.3E-54 389.9 39.7 361 1-440 11-373 (374)
4 PRK05714 2-octaprenyl-3-methyl 100.0 5.3E-49 1.1E-53 391.6 40.3 385 1-446 12-402 (405)
5 TIGR01989 COQ6 Ubiquinone bios 100.0 1.6E-48 3.6E-53 390.5 41.3 418 1-434 10-437 (437)
6 PRK08773 2-octaprenyl-3-methyl 100.0 2.4E-48 5.2E-53 385.3 41.4 376 1-440 16-392 (392)
7 COG0654 UbiH 2-polyprenyl-6-me 100.0 2.8E-48 6.1E-53 383.0 40.1 372 1-441 12-386 (387)
8 PRK07364 2-octaprenyl-6-methox 100.0 9.5E-48 2.1E-52 384.2 41.4 379 1-446 28-411 (415)
9 PRK08849 2-octaprenyl-3-methyl 100.0 4.3E-47 9.4E-52 374.8 41.5 371 1-440 13-384 (384)
10 PRK07333 2-octaprenyl-6-methox 100.0 5.6E-47 1.2E-51 377.3 42.5 383 1-449 11-400 (403)
11 TIGR01988 Ubi-OHases Ubiquinon 100.0 2.1E-46 4.6E-51 371.0 42.1 376 1-439 9-385 (385)
12 PRK09126 hypothetical protein; 100.0 1.4E-46 2.9E-51 373.0 38.5 378 1-441 13-391 (392)
13 PRK08020 ubiF 2-octaprenyl-3-m 100.0 9.5E-46 2.1E-50 366.8 42.0 376 1-440 15-391 (391)
14 PRK07494 2-octaprenyl-6-methox 100.0 9.5E-46 2E-50 366.4 38.8 367 1-441 17-388 (388)
15 TIGR01984 UbiH 2-polyprenyl-6- 100.0 3E-45 6.6E-50 362.2 40.9 371 1-439 9-382 (382)
16 PRK06996 hypothetical protein; 100.0 4E-45 8.6E-50 362.3 41.2 365 1-438 21-393 (398)
17 PRK05732 2-octaprenyl-6-methox 100.0 2.3E-44 4.9E-49 357.6 41.5 376 1-440 13-392 (395)
18 PRK07608 ubiquinone biosynthes 100.0 1.1E-43 2.3E-48 351.9 41.6 373 1-439 15-388 (388)
19 PRK06183 mhpA 3-(3-hydroxyphen 100.0 3.7E-43 8.1E-48 360.7 36.9 366 1-441 20-394 (538)
20 PRK06185 hypothetical protein; 100.0 1.9E-43 4.1E-48 352.2 32.7 368 1-437 16-391 (407)
21 PRK07588 hypothetical protein; 100.0 6.2E-43 1.4E-47 346.4 32.4 370 1-442 10-385 (391)
22 PRK08244 hypothetical protein; 100.0 7.1E-42 1.5E-46 348.2 37.0 362 1-441 12-378 (493)
23 PRK06834 hypothetical protein; 100.0 1.4E-41 3.1E-46 342.9 36.6 357 1-441 13-371 (488)
24 PRK08243 4-hydroxybenzoate 3-m 100.0 7.6E-41 1.7E-45 331.2 35.6 369 1-441 12-389 (392)
25 PRK06753 hypothetical protein; 100.0 1.7E-41 3.6E-46 334.3 30.6 344 1-424 10-357 (373)
26 PRK07045 putative monooxygenas 100.0 4E-41 8.7E-46 333.1 32.4 358 1-423 15-376 (388)
27 PRK06475 salicylate hydroxylas 100.0 1.7E-40 3.6E-45 329.7 31.0 346 1-424 12-378 (400)
28 PRK08132 FAD-dependent oxidore 100.0 1.1E-39 2.4E-44 335.8 38.2 358 1-434 33-400 (547)
29 PRK05868 hypothetical protein; 100.0 3.2E-40 7E-45 323.6 30.5 349 1-421 11-368 (372)
30 PRK08294 phenol 2-monooxygenas 100.0 1.5E-39 3.2E-44 336.8 36.3 341 1-409 42-416 (634)
31 PRK06184 hypothetical protein; 100.0 9.4E-40 2E-44 333.2 33.5 329 1-406 13-353 (502)
32 PRK06847 hypothetical protein; 100.0 2.2E-39 4.7E-44 319.6 33.4 353 1-424 14-373 (375)
33 PLN02985 squalene monooxygenas 100.0 8.8E-40 1.9E-44 330.5 29.4 383 1-447 53-444 (514)
34 PRK08163 salicylate hydroxylas 100.0 4.4E-39 9.4E-44 319.7 31.8 348 1-424 14-374 (396)
35 PRK07190 hypothetical protein; 100.0 2.5E-38 5.5E-43 318.9 36.3 327 1-406 15-348 (487)
36 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 5.3E-38 1.2E-42 310.0 34.3 367 1-440 12-388 (390)
37 PRK07538 hypothetical protein; 100.0 1.5E-38 3.3E-43 317.0 30.5 332 1-400 10-361 (413)
38 PF01494 FAD_binding_3: FAD bi 100.0 3.3E-39 7.2E-44 315.7 23.0 325 1-398 11-356 (356)
39 PRK06126 hypothetical protein; 100.0 1.3E-37 2.8E-42 320.8 34.0 330 1-406 17-376 (545)
40 TIGR03219 salicylate_mono sali 100.0 1.4E-38 3E-43 317.5 25.6 340 1-412 10-380 (414)
41 PTZ00367 squalene epoxidase; P 100.0 1.2E-37 2.6E-42 316.2 31.7 380 1-447 43-458 (567)
42 PRK07236 hypothetical protein; 100.0 1.5E-37 3.2E-42 307.3 29.1 329 1-408 16-378 (386)
43 KOG3855 Monooxygenase involved 100.0 2.2E-36 4.8E-41 279.7 25.1 423 1-440 46-480 (481)
44 PLN02927 antheraxanthin epoxid 100.0 5E-35 1.1E-39 298.2 30.7 340 1-405 91-446 (668)
45 KOG2614 Kynurenine 3-monooxyge 100.0 9E-34 1.9E-38 264.8 24.0 322 1-394 12-364 (420)
46 PLN00093 geranylgeranyl diphos 100.0 9.9E-30 2.1E-34 253.6 33.9 323 1-410 49-389 (450)
47 TIGR02023 BchP-ChlP geranylger 100.0 3.7E-29 8.1E-34 247.3 33.5 312 1-408 10-338 (388)
48 TIGR02028 ChlP geranylgeranyl 100.0 3.5E-28 7.5E-33 240.3 34.5 321 1-408 10-348 (398)
49 PRK08255 salicylyl-CoA 5-hydro 100.0 2.2E-29 4.7E-34 267.0 24.1 319 1-408 10-342 (765)
50 PRK11445 putative oxidoreducta 100.0 5.7E-28 1.2E-32 235.4 26.9 297 1-391 11-317 (351)
51 TIGR02032 GG-red-SF geranylger 100.0 1.5E-27 3.3E-32 227.3 26.7 277 1-364 10-295 (295)
52 KOG1298 Squalene monooxygenase 100.0 1.5E-27 3.2E-32 219.0 22.4 381 1-447 55-444 (509)
53 COG0644 FixC Dehydrogenases (f 100.0 1.7E-25 3.7E-30 221.3 32.9 323 1-406 13-340 (396)
54 PRK10015 oxidoreductase; Provi 99.9 2.5E-25 5.5E-30 221.6 29.4 337 1-408 15-374 (429)
55 PRK10157 putative oxidoreducta 99.9 6.7E-24 1.5E-28 211.7 31.0 331 1-407 15-372 (428)
56 TIGR01790 carotene-cycl lycope 99.9 3.2E-21 6.9E-26 191.1 30.0 296 1-394 9-322 (388)
57 PF04820 Trp_halogenase: Trypt 99.9 9.4E-22 2E-26 196.6 23.2 328 1-415 9-396 (454)
58 PLN02697 lycopene epsilon cycl 99.9 1.6E-18 3.5E-23 174.8 32.6 307 1-404 118-453 (529)
59 PLN02463 lycopene beta cyclase 99.8 2.4E-18 5.3E-23 171.1 30.2 275 1-372 38-336 (447)
60 PF08491 SE: Squalene epoxidas 99.8 3E-20 6.5E-25 168.1 15.0 243 173-447 2-247 (276)
61 TIGR01789 lycopene_cycl lycope 99.8 3.5E-17 7.6E-22 160.0 23.3 295 1-402 9-318 (370)
62 PF05834 Lycopene_cycl: Lycope 99.7 7.7E-15 1.7E-19 144.1 26.3 270 1-366 9-290 (374)
63 PRK04176 ribulose-1,5-biphosph 99.0 7.1E-09 1.5E-13 96.0 12.8 134 1-191 35-180 (257)
64 TIGR00292 thiazole biosynthesi 99.0 1E-08 2.2E-13 94.7 13.0 133 1-190 31-176 (254)
65 KOG2415 Electron transfer flav 98.8 6.5E-07 1.4E-11 84.7 18.8 357 1-408 86-464 (621)
66 COG2081 Predicted flavoprotein 98.6 1.5E-07 3.3E-12 89.3 9.4 151 1-185 13-168 (408)
67 COG1635 THI4 Ribulose 1,5-bisp 98.6 1E-06 2.2E-11 76.6 13.6 136 1-190 40-184 (262)
68 TIGR01377 soxA_mon sarcosine o 98.6 1.4E-05 3.1E-10 78.9 22.5 71 103-195 141-212 (380)
69 PF01266 DAO: FAD dependent ox 98.5 3.5E-06 7.6E-11 82.2 16.9 71 101-193 141-213 (358)
70 PF01946 Thi4: Thi4 family; PD 98.5 5.6E-07 1.2E-11 78.7 9.5 136 1-190 27-171 (230)
71 PRK11728 hydroxyglutarate oxid 98.4 1.8E-05 3.8E-10 78.6 17.0 70 102-193 144-214 (393)
72 TIGR00275 flavoprotein, HI0933 98.3 4.8E-06 1E-10 82.7 11.3 66 106-193 104-180 (400)
73 PRK12409 D-amino acid dehydrog 98.3 0.00012 2.7E-09 73.1 20.7 67 105-192 195-267 (410)
74 PRK01747 mnmC bifunctional tRN 98.2 4E-05 8.6E-10 81.3 17.3 61 103-185 404-464 (662)
75 PRK11259 solA N-methyltryptoph 98.2 0.00021 4.6E-09 70.4 21.4 60 104-185 146-205 (376)
76 PF03486 HI0933_like: HI0933-l 98.2 5.2E-07 1.1E-11 89.0 1.6 140 1-185 10-167 (409)
77 PRK00711 D-amino acid dehydrog 98.1 0.00019 4.2E-09 71.8 17.8 68 104-193 198-267 (416)
78 PRK13369 glycerol-3-phosphate 98.1 0.00036 7.8E-09 71.6 19.9 113 104-237 152-271 (502)
79 TIGR01373 soxB sarcosine oxida 98.1 0.00012 2.7E-09 73.0 16.0 114 104-240 180-294 (407)
80 PF13738 Pyr_redox_3: Pyridine 98.1 2.8E-06 6.1E-11 76.0 3.6 61 104-185 79-139 (203)
81 COG3380 Predicted NAD/FAD-depe 98.1 0.00013 2.9E-09 65.8 13.8 47 107-179 108-155 (331)
82 PRK12266 glpD glycerol-3-phosp 98.0 0.00014 3.1E-09 74.5 15.5 68 104-192 152-226 (508)
83 PRK05192 tRNA uridine 5-carbox 98.0 5.4E-05 1.2E-09 77.6 11.7 143 1-185 14-158 (618)
84 PF01593 Amino_oxidase: Flavin 97.9 9.3E-05 2E-09 74.0 12.2 59 108-187 210-268 (450)
85 PF01134 GIDA: Glucose inhibit 97.9 0.00016 3.4E-09 70.3 11.5 139 1-182 9-150 (392)
86 PRK05257 malate:quinone oxidor 97.8 0.00031 6.7E-09 71.5 13.6 73 102-193 178-256 (494)
87 PF12831 FAD_oxidored: FAD dep 97.8 6.1E-06 1.3E-10 82.7 1.1 146 1-192 9-157 (428)
88 PLN02661 Putative thiazole syn 97.8 0.00029 6.3E-09 67.4 11.7 131 1-186 102-246 (357)
89 COG0579 Predicted dehydrogenas 97.7 0.00095 2.1E-08 65.7 14.9 73 102-194 148-222 (429)
90 TIGR02352 thiamin_ThiO glycine 97.7 0.0014 3.1E-08 63.3 16.0 61 103-185 133-194 (337)
91 PLN02172 flavin-containing mon 97.7 0.0001 2.3E-09 74.3 7.6 61 104-185 108-174 (461)
92 PLN02464 glycerol-3-phosphate 97.6 0.0021 4.6E-08 67.5 16.4 73 103-193 228-306 (627)
93 TIGR01320 mal_quin_oxido malat 97.6 0.0016 3.6E-08 66.1 14.4 72 102-193 173-250 (483)
94 TIGR02485 CobZ_N-term precorri 97.5 0.0013 2.7E-08 66.3 12.7 64 107-188 123-187 (432)
95 TIGR01292 TRX_reduct thioredox 97.5 0.00071 1.5E-08 64.3 10.3 56 107-184 57-112 (300)
96 KOG2820 FAD-dependent oxidored 97.4 0.0067 1.4E-07 56.7 14.7 73 103-193 149-223 (399)
97 TIGR00136 gidA glucose-inhibit 97.4 0.0013 2.9E-08 67.4 10.9 149 1-190 10-160 (617)
98 PRK15317 alkyl hydroperoxide r 97.3 0.0015 3.3E-08 67.2 10.4 58 106-184 265-322 (517)
99 KOG1399 Flavin-containing mono 97.2 0.0019 4.2E-08 64.3 10.1 125 1-184 16-153 (448)
100 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00096 2.1E-08 65.6 7.9 112 1-134 12-125 (436)
101 PRK07804 L-aspartate oxidase; 97.2 0.0033 7.3E-08 65.0 12.3 61 107-187 144-213 (541)
102 PRK09231 fumarate reductase fl 97.2 0.0027 5.9E-08 66.2 11.6 61 107-187 133-199 (582)
103 PRK13339 malate:quinone oxidor 97.2 0.0036 7.8E-08 63.5 12.0 73 102-193 179-257 (497)
104 PTZ00383 malate:quinone oxidor 97.2 0.0086 1.9E-07 60.9 14.4 70 103-192 207-282 (497)
105 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.0044 9.5E-08 64.7 12.7 61 107-188 129-195 (566)
106 TIGR01176 fum_red_Fp fumarate 97.1 0.0068 1.5E-07 63.2 13.5 61 107-186 132-197 (580)
107 TIGR03329 Phn_aa_oxid putative 97.1 0.011 2.4E-07 60.0 14.8 60 103-185 179-238 (460)
108 TIGR01813 flavo_cyto_c flavocy 97.1 0.0031 6.8E-08 63.6 10.6 60 107-185 130-193 (439)
109 TIGR00551 nadB L-aspartate oxi 97.1 0.0057 1.2E-07 62.5 12.4 63 107-188 128-193 (488)
110 COG0665 DadA Glycine/D-amino a 97.0 0.076 1.7E-06 52.4 19.5 62 104-186 153-214 (387)
111 COG0578 GlpA Glycerol-3-phosph 97.0 0.033 7.2E-07 56.4 16.4 71 102-193 159-235 (532)
112 PLN02576 protoporphyrinogen ox 97.0 0.19 4.2E-06 51.5 22.8 34 330-369 455-488 (496)
113 PRK11101 glpA sn-glycerol-3-ph 97.0 0.0084 1.8E-07 62.2 12.2 70 103-193 145-221 (546)
114 PRK08274 tricarballylate dehyd 96.9 0.0049 1.1E-07 62.7 10.1 59 107-185 131-193 (466)
115 TIGR02730 carot_isom carotene 96.9 0.074 1.6E-06 54.5 18.5 66 106-191 228-293 (493)
116 TIGR03364 HpnW_proposed FAD de 96.9 0.0052 1.1E-07 60.3 9.6 58 103-185 141-198 (365)
117 PRK06481 fumarate reductase fl 96.9 0.0054 1.2E-07 63.0 9.9 58 107-185 190-252 (506)
118 TIGR03140 AhpF alkyl hydropero 96.9 0.0058 1.3E-07 62.9 10.1 58 106-184 266-323 (515)
119 PRK12416 protoporphyrinogen ox 96.8 0.038 8.2E-07 56.2 15.4 51 108-181 227-277 (463)
120 TIGR03862 flavo_PP4765 unchara 96.8 0.0077 1.7E-07 58.8 9.7 71 102-195 81-163 (376)
121 PLN02612 phytoene desaturase 96.8 0.15 3.2E-06 53.2 19.8 63 108-190 309-371 (567)
122 PF00743 FMO-like: Flavin-bind 96.8 0.0052 1.1E-07 63.1 8.5 68 103-185 80-151 (531)
123 COG2072 TrkA Predicted flavopr 96.8 0.0066 1.4E-07 61.1 9.2 59 106-185 85-145 (443)
124 PF00890 FAD_binding_2: FAD bi 96.8 0.0053 1.2E-07 61.4 8.5 61 105-185 139-204 (417)
125 PRK06069 sdhA succinate dehydr 96.7 0.036 7.7E-07 58.0 14.0 63 107-188 137-204 (577)
126 PRK09897 hypothetical protein; 96.6 0.013 2.7E-07 60.1 10.2 50 113-182 113-164 (534)
127 PRK06854 adenylylsulfate reduc 96.6 0.022 4.9E-07 59.7 12.0 62 105-185 130-196 (608)
128 PRK08401 L-aspartate oxidase; 96.5 0.0082 1.8E-07 61.0 8.1 60 107-188 120-179 (466)
129 PRK06175 L-aspartate oxidase; 96.4 0.034 7.4E-07 55.9 11.7 60 107-185 128-190 (433)
130 PRK11883 protoporphyrinogen ox 96.4 0.29 6.3E-06 49.4 18.6 42 124-185 235-276 (451)
131 PF13454 NAD_binding_9: FAD-NA 96.4 0.018 3.9E-07 49.1 8.2 35 128-182 121-155 (156)
132 TIGR02734 crtI_fam phytoene de 96.4 0.23 4.9E-06 51.1 17.9 64 107-190 219-282 (502)
133 PLN02268 probable polyamine ox 96.4 0.035 7.6E-07 55.9 11.7 40 123-182 211-250 (435)
134 PRK07121 hypothetical protein; 96.4 0.045 9.7E-07 56.1 12.6 60 107-185 177-240 (492)
135 PRK05945 sdhA succinate dehydr 96.4 0.032 7E-07 58.2 11.5 60 107-186 135-199 (575)
136 PRK04965 NADH:flavorubredoxin 96.3 0.026 5.6E-07 55.7 9.9 65 108-193 184-250 (377)
137 TIGR00137 gid_trmFO tRNA:m(5)U 96.2 0.025 5.3E-07 56.1 8.9 114 1-134 10-123 (433)
138 KOG2853 Possible oxidoreductas 96.2 0.16 3.5E-06 47.8 13.5 86 104-193 240-330 (509)
139 TIGR00562 proto_IX_ox protopor 96.2 0.53 1.1E-05 47.7 19.0 41 123-183 238-278 (462)
140 PRK07233 hypothetical protein; 96.1 0.6 1.3E-05 46.8 19.0 56 108-184 199-254 (434)
141 PF13450 NAD_binding_8: NAD(P) 96.1 0.0038 8.2E-08 44.9 2.0 26 1-30 6-31 (68)
142 PRK08275 putative oxidoreducta 96.1 0.069 1.5E-06 55.6 12.1 61 107-186 137-202 (554)
143 TIGR03143 AhpF_homolog putativ 96.0 0.049 1.1E-06 56.7 10.8 57 106-185 59-115 (555)
144 PRK06263 sdhA succinate dehydr 96.0 0.15 3.3E-06 52.9 14.3 59 107-185 134-198 (543)
145 TIGR01424 gluta_reduc_2 glutat 95.9 0.054 1.2E-06 54.8 10.4 51 109-184 92-142 (446)
146 PRK05249 soluble pyridine nucl 95.9 0.05 1.1E-06 55.2 10.1 60 107-187 216-275 (461)
147 PRK07573 sdhA succinate dehydr 95.7 0.089 1.9E-06 55.6 11.2 58 109-186 172-234 (640)
148 PTZ00139 Succinate dehydrogena 95.7 0.12 2.7E-06 54.3 12.2 60 107-185 166-230 (617)
149 PRK08071 L-aspartate oxidase; 95.7 0.21 4.5E-06 51.4 13.5 58 107-185 130-191 (510)
150 PLN00128 Succinate dehydrogena 95.6 0.13 2.8E-06 54.3 11.8 61 107-186 187-252 (635)
151 PRK07843 3-ketosteroid-delta-1 95.6 0.23 5E-06 51.7 13.5 26 1-30 17-42 (557)
152 PRK13977 myosin-cross-reactive 95.6 0.22 4.8E-06 51.1 12.9 60 107-182 226-291 (576)
153 PRK09077 L-aspartate oxidase; 95.5 0.19 4.2E-06 52.0 12.6 69 107-188 138-211 (536)
154 COG1232 HemY Protoporphyrinoge 95.5 0.13 2.8E-06 51.3 10.6 64 1-68 10-80 (444)
155 PRK06416 dihydrolipoamide dehy 95.4 0.042 9.1E-07 55.8 7.5 24 1-28 14-37 (462)
156 TIGR03467 HpnE squalene-associ 95.4 0.53 1.2E-05 46.8 15.4 53 111-184 201-254 (419)
157 PRK05976 dihydrolipoamide dehy 95.4 0.09 2E-06 53.6 9.6 24 1-28 14-37 (472)
158 TIGR01811 sdhA_Bsu succinate d 95.4 0.17 3.6E-06 53.2 11.7 61 108-186 130-198 (603)
159 PRK12834 putative FAD-binding 95.3 0.24 5.1E-06 51.6 12.7 25 1-29 14-38 (549)
160 COG0029 NadB Aspartate oxidase 95.2 0.21 4.6E-06 49.6 11.1 62 107-188 133-200 (518)
161 PLN02676 polyamine oxidase 95.2 1.4 3.1E-05 45.0 17.8 59 107-185 224-287 (487)
162 PRK07803 sdhA succinate dehydr 95.2 0.44 9.6E-06 50.3 14.3 60 107-185 138-214 (626)
163 COG0492 TrxB Thioredoxin reduc 95.2 0.13 2.8E-06 48.9 9.3 56 107-185 61-116 (305)
164 PRK06452 sdhA succinate dehydr 95.1 0.27 5.9E-06 51.3 12.4 60 107-186 136-200 (566)
165 COG1231 Monoamine oxidase [Ami 95.1 0.22 4.7E-06 49.0 10.7 50 111-180 209-258 (450)
166 TIGR03197 MnmC_Cterm tRNA U-34 95.1 0.069 1.5E-06 52.7 7.6 61 103-185 131-191 (381)
167 PRK07057 sdhA succinate dehydr 95.1 0.26 5.7E-06 51.6 12.2 61 107-186 148-213 (591)
168 KOG2844 Dimethylglycine dehydr 95.1 1.3 2.8E-05 45.8 16.1 71 103-194 183-254 (856)
169 PRK06134 putative FAD-binding 95.0 0.35 7.5E-06 50.7 12.8 58 108-185 218-279 (581)
170 PRK06116 glutathione reductase 95.0 0.17 3.7E-06 51.2 10.2 61 107-187 208-268 (450)
171 PRK08205 sdhA succinate dehydr 95.0 0.23 5.1E-06 52.0 11.4 64 107-186 140-208 (583)
172 PRK14694 putative mercuric red 94.9 0.16 3.5E-06 51.7 9.9 24 1-28 16-39 (468)
173 PRK06467 dihydrolipoamide dehy 94.9 0.15 3.2E-06 51.9 9.5 26 1-30 14-39 (471)
174 PRK09564 coenzyme A disulfide 94.8 0.14 2.9E-06 51.8 8.9 47 118-185 67-116 (444)
175 PRK10262 thioredoxin reductase 94.8 0.19 4.1E-06 48.3 9.5 55 107-184 63-117 (321)
176 PLN02976 amine oxidase 94.8 1.9 4.1E-05 49.1 17.8 70 329-401 1150-1220(1713)
177 PLN02507 glutathione reductase 94.8 0.08 1.7E-06 54.3 7.2 53 109-185 126-180 (499)
178 TIGR02733 desat_CrtD C-3',4' d 94.7 2.3 5E-05 43.5 17.9 57 107-183 232-293 (492)
179 PRK06416 dihydrolipoamide dehy 94.7 0.17 3.6E-06 51.5 9.4 59 107-186 213-274 (462)
180 COG2509 Uncharacterized FAD-de 94.7 0.52 1.1E-05 46.4 12.0 59 107-185 173-231 (486)
181 PRK12839 hypothetical protein; 94.7 0.16 3.4E-06 53.0 9.3 61 106-185 213-277 (572)
182 PRK12779 putative bifunctional 94.7 0.046 1E-06 60.1 5.6 37 329-370 592-628 (944)
183 PRK05249 soluble pyridine nucl 94.7 0.13 2.8E-06 52.3 8.4 26 1-30 15-40 (461)
184 PRK06912 acoL dihydrolipoamide 94.6 0.15 3.2E-06 51.8 8.7 25 1-29 10-34 (458)
185 PRK07395 L-aspartate oxidase; 94.6 0.38 8.3E-06 49.9 11.7 62 107-185 134-198 (553)
186 PLN02815 L-aspartate oxidase 94.5 0.42 9.1E-06 50.0 11.9 61 107-185 155-223 (594)
187 PRK07845 flavoprotein disulfid 94.5 0.13 2.9E-06 52.2 8.0 55 111-185 96-152 (466)
188 PRK06116 glutathione reductase 94.4 0.16 3.5E-06 51.4 8.4 24 1-28 14-37 (450)
189 TIGR01350 lipoamide_DH dihydro 94.3 0.23 5.1E-06 50.4 9.4 60 107-187 211-272 (461)
190 PRK12842 putative succinate de 94.3 0.091 2E-06 54.9 6.5 57 108-184 215-275 (574)
191 PRK07512 L-aspartate oxidase; 94.3 0.48 1E-05 48.8 11.6 60 107-185 136-198 (513)
192 PRK07845 flavoprotein disulfid 94.3 0.31 6.8E-06 49.5 10.2 59 108-187 219-277 (466)
193 PRK09078 sdhA succinate dehydr 94.3 0.14 3.1E-06 53.7 7.9 59 107-185 149-213 (598)
194 PF07992 Pyr_redox_2: Pyridine 94.2 0.031 6.6E-07 49.5 2.5 25 1-29 9-33 (201)
195 PRK12837 3-ketosteroid-delta-1 94.2 0.25 5.4E-06 50.9 9.3 25 2-30 17-41 (513)
196 PRK12844 3-ketosteroid-delta-1 94.0 0.2 4.4E-06 52.1 8.4 59 107-185 208-270 (557)
197 PRK08010 pyridine nucleotide-d 94.0 0.28 6.1E-06 49.5 9.2 25 1-29 13-37 (441)
198 PRK13748 putative mercuric red 94.0 0.33 7.2E-06 50.6 10.0 24 1-28 108-131 (561)
199 PRK08641 sdhA succinate dehydr 94.0 0.59 1.3E-05 49.0 11.7 62 107-186 133-202 (589)
200 TIGR01421 gluta_reduc_1 glutat 93.8 0.3 6.5E-06 49.4 9.0 24 1-28 12-35 (450)
201 PRK12831 putative oxidoreducta 93.7 0.07 1.5E-06 54.1 4.2 36 329-369 426-461 (464)
202 PRK08958 sdhA succinate dehydr 93.6 0.7 1.5E-05 48.5 11.5 61 107-186 143-208 (588)
203 PRK06370 mercuric reductase; V 93.6 0.11 2.4E-06 52.7 5.5 24 1-28 15-38 (463)
204 KOG2665 Predicted FAD-dependen 93.5 0.43 9.3E-06 44.6 8.4 72 103-190 192-263 (453)
205 PRK12843 putative FAD-binding 93.4 0.14 3E-06 53.6 5.9 59 108-186 222-284 (578)
206 PTZ00306 NADH-dependent fumara 93.3 0.88 1.9E-05 51.7 12.4 68 108-185 545-621 (1167)
207 TIGR03377 glycerol3P_GlpA glyc 93.3 1.8 3.9E-05 44.7 13.8 70 103-193 124-200 (516)
208 KOG2852 Possible oxidoreductas 93.2 0.25 5.5E-06 45.5 6.4 64 102-185 142-209 (380)
209 PRK07846 mycothione reductase; 93.2 0.59 1.3E-05 47.3 9.9 56 109-186 209-264 (451)
210 TIGR02732 zeta_caro_desat caro 93.0 9.1 0.0002 39.0 18.1 63 1-67 9-77 (474)
211 TIGR01372 soxA sarcosine oxida 92.9 0.89 1.9E-05 50.8 11.5 58 108-186 352-413 (985)
212 PRK12845 3-ketosteroid-delta-1 92.7 0.8 1.7E-05 47.7 10.2 59 108-186 218-280 (564)
213 TIGR01350 lipoamide_DH dihydro 92.7 0.24 5.1E-06 50.3 6.3 33 329-366 299-331 (461)
214 PRK09853 putative selenate red 92.7 0.23 5E-06 54.5 6.3 36 329-369 807-842 (1019)
215 PRK06115 dihydrolipoamide dehy 92.6 0.27 5.9E-06 50.0 6.6 26 1-30 13-38 (466)
216 PRK08626 fumarate reductase fl 92.6 0.51 1.1E-05 50.1 8.8 60 107-186 158-222 (657)
217 TIGR02731 phytoene_desat phyto 92.3 0.15 3.2E-06 51.7 4.1 62 1-66 9-76 (453)
218 COG3349 Uncharacterized conser 92.2 0.19 4.1E-06 50.2 4.7 62 1-66 10-77 (485)
219 PF06039 Mqo: Malate:quinone o 92.1 0.77 1.7E-05 45.6 8.5 87 101-206 175-271 (488)
220 PRK13512 coenzyme A disulfide 92.0 0.68 1.5E-05 46.7 8.5 55 107-186 189-243 (438)
221 TIGR03378 glycerol3P_GlpB glyc 91.9 0.63 1.4E-05 46.1 7.8 58 107-185 263-324 (419)
222 TIGR02053 MerA mercuric reduct 91.9 0.97 2.1E-05 45.9 9.5 59 107-186 207-268 (463)
223 PRK07251 pyridine nucleotide-d 91.6 1.2 2.7E-05 44.8 10.0 58 107-186 198-255 (438)
224 TIGR02374 nitri_red_nirB nitri 91.6 0.43 9.2E-06 51.9 6.8 42 122-185 68-109 (785)
225 PLN02546 glutathione reductase 91.5 0.34 7.4E-06 50.3 5.8 22 1-26 89-110 (558)
226 PRK06327 dihydrolipoamide dehy 91.4 1.3 2.9E-05 45.1 10.0 33 329-366 314-346 (475)
227 PRK07251 pyridine nucleotide-d 91.4 0.58 1.3E-05 47.1 7.3 25 1-29 13-37 (438)
228 PRK13512 coenzyme A disulfide 91.3 0.72 1.6E-05 46.5 7.9 28 1-30 11-38 (438)
229 PRK09754 phenylpropionate diox 91.3 0.74 1.6E-05 45.7 7.9 42 122-185 72-113 (396)
230 KOG2960 Protein involved in th 91.3 0.42 9.1E-06 42.0 5.1 32 2-35 87-118 (328)
231 PF13434 K_oxygenase: L-lysine 91.1 0.45 9.7E-06 46.2 5.9 71 103-190 91-165 (341)
232 PF00070 Pyr_redox: Pyridine n 91.0 0.5 1.1E-05 34.9 4.8 41 107-168 40-80 (80)
233 PRK07233 hypothetical protein; 90.8 0.24 5.1E-06 49.7 3.8 62 1-66 9-75 (434)
234 TIGR02731 phytoene_desat phyto 90.6 21 0.00045 36.1 18.5 63 107-190 213-281 (453)
235 PTZ00058 glutathione reductase 90.4 0.48 1E-05 49.2 5.6 24 1-28 58-81 (561)
236 COG1233 Phytoene dehydrogenase 90.4 0.2 4.3E-06 51.2 2.8 56 107-182 224-279 (487)
237 PLN02487 zeta-carotene desatur 90.2 0.29 6.4E-06 50.8 3.9 63 1-67 85-153 (569)
238 PLN02487 zeta-carotene desatur 90.2 26 0.00056 36.6 18.2 67 108-190 296-365 (569)
239 PRK14989 nitrite reductase sub 90.1 0.84 1.8E-05 49.9 7.5 42 122-185 73-114 (847)
240 COG0446 HcaD Uncharacterized N 90.1 1.7 3.6E-05 43.1 9.2 57 108-185 179-238 (415)
241 PLN02328 lysine-specific histo 90.1 11 0.00024 40.8 15.6 40 329-371 643-682 (808)
242 PLN03000 amine oxidase 90.0 13 0.00027 40.7 15.8 38 329-369 587-624 (881)
243 TIGR03452 mycothione_red mycot 89.9 2.4 5.2E-05 42.9 10.2 56 109-186 212-267 (452)
244 PRK14727 putative mercuric red 89.8 1.4 2.9E-05 45.1 8.4 26 1-30 26-51 (479)
245 PRK09754 phenylpropionate diox 89.8 1.2 2.7E-05 44.2 7.8 57 108-186 187-243 (396)
246 TIGR02732 zeta_caro_desat caro 89.1 0.41 9E-06 48.7 4.0 64 109-190 221-289 (474)
247 TIGR00562 proto_IX_ox protopor 89.0 0.39 8.4E-06 48.7 3.7 33 330-368 428-460 (462)
248 PRK06292 dihydrolipoamide dehy 88.7 2.9 6.4E-05 42.3 9.9 33 329-366 298-330 (460)
249 PLN02507 glutathione reductase 88.6 1.7 3.6E-05 44.7 8.0 59 107-186 244-302 (499)
250 PRK05976 dihydrolipoamide dehy 88.4 3 6.6E-05 42.4 9.7 61 107-186 221-283 (472)
251 PRK07818 dihydrolipoamide dehy 88.3 1.5 3.2E-05 44.7 7.4 24 1-28 14-37 (466)
252 TIGR02734 crtI_fam phytoene de 88.3 0.3 6.4E-06 50.2 2.3 37 330-371 459-495 (502)
253 TIGR02061 aprA adenosine phosp 88.2 2.2 4.7E-05 44.9 8.6 62 107-185 126-192 (614)
254 COG1233 Phytoene dehydrogenase 87.7 1.3 2.9E-05 45.3 6.6 27 1-31 13-39 (487)
255 TIGR01424 gluta_reduc_2 glutat 87.6 2.1 4.5E-05 43.3 7.9 59 107-186 207-265 (446)
256 COG1251 NirB NAD(P)H-nitrite r 87.3 0.61 1.3E-05 48.6 3.8 63 111-194 191-255 (793)
257 PF06100 Strep_67kDa_ant: Stre 87.2 13 0.00028 37.5 12.7 31 1-31 12-42 (500)
258 KOG3923 D-aspartate oxidase [A 86.6 27 0.00059 32.8 13.5 51 102-185 146-196 (342)
259 PLN02568 polyamine oxidase 86.6 2.1 4.6E-05 44.3 7.4 53 107-182 242-294 (539)
260 KOG1346 Programmed cell death 86.3 1 2.2E-05 43.8 4.4 65 107-192 393-459 (659)
261 TIGR02374 nitri_red_nirB nitri 86.0 2.4 5.1E-05 46.2 7.7 56 109-185 184-239 (785)
262 TIGR02733 desat_CrtD C-3',4' d 85.9 0.47 1E-05 48.6 2.2 32 330-366 459-490 (492)
263 PTZ00318 NADH dehydrogenase-li 85.7 5.4 0.00012 40.0 9.7 42 329-370 308-349 (424)
264 PRK12416 protoporphyrinogen ox 85.5 0.71 1.5E-05 46.9 3.3 32 330-367 429-460 (463)
265 PTZ00363 rab-GDP dissociation 85.5 2.8 6.1E-05 42.2 7.4 58 107-183 232-289 (443)
266 TIGR01423 trypano_reduc trypan 85.5 3.3 7.2E-05 42.3 8.1 61 107-187 231-291 (486)
267 COG3486 IucD Lysine/ornithine 85.1 1.7 3.6E-05 42.3 5.3 139 1-187 15-160 (436)
268 PLN02612 phytoene desaturase 85.0 1.1 2.4E-05 46.8 4.4 62 1-66 103-170 (567)
269 TIGR02730 carot_isom carotene 84.9 0.55 1.2E-05 48.2 2.1 32 330-366 459-490 (493)
270 TIGR01438 TGR thioredoxin and 84.1 7.7 0.00017 39.7 10.1 34 329-366 310-343 (484)
271 PRK07818 dihydrolipoamide dehy 84.1 3.3 7.2E-05 42.1 7.4 59 107-186 213-275 (466)
272 PTZ00052 thioredoxin reductase 83.8 4.3 9.2E-05 41.7 8.1 59 108-187 223-281 (499)
273 PRK04965 NADH:flavorubredoxin 83.8 3 6.4E-05 41.1 6.7 41 122-185 72-112 (377)
274 PRK13800 putative oxidoreducta 83.4 2.7 5.8E-05 46.5 6.8 25 1-29 23-47 (897)
275 PRK06292 dihydrolipoamide dehy 83.4 8 0.00017 39.2 9.8 59 108-187 211-271 (460)
276 PTZ00318 NADH dehydrogenase-li 83.0 3.6 7.8E-05 41.3 7.1 52 108-184 229-280 (424)
277 PRK06327 dihydrolipoamide dehy 83.0 3.8 8.2E-05 41.8 7.3 59 108-187 225-287 (475)
278 COG1206 Gid NAD(FAD)-utilizing 83.0 3.2 7E-05 39.3 6.0 110 1-134 13-126 (439)
279 KOG2404 Fumarate reductase, fl 82.9 7.2 0.00016 36.9 8.2 60 108-186 140-208 (477)
280 PLN02529 lysine-specific histo 82.8 75 0.0016 34.4 17.3 38 329-369 562-599 (738)
281 TIGR03385 CoA_CoA_reduc CoA-di 82.5 4.2 9.1E-05 40.8 7.3 56 108-186 180-235 (427)
282 PRK11883 protoporphyrinogen ox 82.4 0.74 1.6E-05 46.4 1.9 62 1-66 10-78 (451)
283 COG4529 Uncharacterized protei 81.9 2.2 4.7E-05 42.5 4.8 33 157-189 137-169 (474)
284 PRK14989 nitrite reductase sub 81.9 4.7 0.0001 44.2 7.8 58 110-186 190-247 (847)
285 PRK08010 pyridine nucleotide-d 81.7 5.7 0.00012 40.0 8.0 58 107-186 199-256 (441)
286 TIGR01423 trypano_reduc trypan 81.3 7.8 0.00017 39.6 8.8 24 1-27 13-36 (486)
287 TIGR01421 gluta_reduc_1 glutat 80.9 5.9 0.00013 40.1 7.7 60 107-186 207-267 (450)
288 PTZ00153 lipoamide dehydrogena 80.8 11 0.00024 40.0 10.0 23 1-27 126-148 (659)
289 PRK07208 hypothetical protein; 80.6 0.97 2.1E-05 46.1 2.0 60 107-186 218-282 (479)
290 COG0445 GidA Flavin-dependent 80.5 2 4.2E-05 43.6 3.9 61 104-184 97-158 (621)
291 PRK06912 acoL dihydrolipoamide 80.1 7.2 0.00016 39.5 8.1 58 107-186 211-270 (458)
292 COG1249 Lpd Pyruvate/2-oxoglut 80.0 7.5 0.00016 39.2 8.0 59 107-186 214-274 (454)
293 COG1148 HdrA Heterodisulfide r 79.7 1.2 2.7E-05 44.2 2.2 26 1-30 134-159 (622)
294 TIGR03169 Nterm_to_SelD pyridi 79.3 5.6 0.00012 38.8 6.9 52 108-184 192-243 (364)
295 PRK14694 putative mercuric red 79.3 7 0.00015 39.8 7.7 58 107-186 218-275 (468)
296 COG1252 Ndh NADH dehydrogenase 79.1 9 0.0002 37.9 8.0 41 327-370 289-333 (405)
297 PRK05329 anaerobic glycerol-3- 78.8 8 0.00017 38.7 7.7 56 107-183 259-317 (422)
298 PRK06115 dihydrolipoamide dehy 78.5 6.8 0.00015 39.8 7.4 59 107-186 215-278 (466)
299 TIGR03385 CoA_CoA_reduc CoA-di 78.5 9.1 0.0002 38.3 8.2 44 120-184 57-103 (427)
300 PRK09564 coenzyme A disulfide 78.4 7.9 0.00017 39.0 7.8 57 107-185 191-247 (444)
301 PRK07846 mycothione reductase; 78.2 6.1 0.00013 40.0 6.9 32 329-365 292-323 (451)
302 COG1053 SdhA Succinate dehydro 77.9 11 0.00025 39.1 8.7 66 107-187 138-205 (562)
303 PRK06370 mercuric reductase; V 77.9 8.7 0.00019 39.0 8.0 59 107-186 212-273 (463)
304 KOG1336 Monodehydroascorbate/f 77.8 6.3 0.00014 39.2 6.4 61 107-186 255-315 (478)
305 TIGR01438 TGR thioredoxin and 77.5 9.2 0.0002 39.1 8.0 59 107-186 220-281 (484)
306 TIGR03315 Se_ygfK putative sel 77.1 1.5 3.3E-05 48.5 2.2 26 1-30 547-572 (1012)
307 COG1249 Lpd Pyruvate/2-oxoglut 77.0 6.1 0.00013 39.8 6.3 24 1-28 14-37 (454)
308 PLN02852 ferredoxin-NADP+ redu 77.0 1.7 3.6E-05 44.3 2.4 37 330-370 387-423 (491)
309 KOG0029 Amine oxidase [Seconda 76.8 1.7 3.6E-05 44.4 2.3 28 1-32 25-52 (501)
310 PRK14727 putative mercuric red 76.6 9.4 0.0002 39.0 7.8 58 108-187 229-286 (479)
311 COG0493 GltD NADPH-dependent g 75.7 2.5 5.4E-05 42.7 3.2 26 1-30 133-158 (457)
312 COG2907 Predicted NAD/FAD-bind 75.7 14 0.00031 35.4 7.8 25 1-30 18-42 (447)
313 KOG1335 Dihydrolipoamide dehyd 74.3 12 0.00025 36.5 6.9 26 1-30 49-74 (506)
314 KOG1276 Protoporphyrinogen oxi 74.0 4.3 9.3E-05 39.9 4.1 64 1-68 21-95 (491)
315 TIGR00031 UDP-GALP_mutase UDP- 73.8 2.3 4.9E-05 41.8 2.3 26 1-30 11-36 (377)
316 PRK06567 putative bifunctional 73.8 2 4.3E-05 47.1 2.0 24 1-28 393-416 (1028)
317 PTZ00188 adrenodoxin reductase 73.1 2.4 5.1E-05 43.0 2.2 27 1-30 49-75 (506)
318 PF00070 Pyr_redox: Pyridine n 73.1 3.2 6.8E-05 30.5 2.5 25 2-30 10-34 (80)
319 PRK12769 putative oxidoreducta 71.5 2.5 5.5E-05 45.0 2.2 36 329-369 617-652 (654)
320 KOG4254 Phytoene desaturase [C 71.4 7.4 0.00016 38.6 5.1 64 107-190 264-327 (561)
321 COG0562 Glf UDP-galactopyranos 70.7 5.5 0.00012 37.7 3.9 27 1-31 11-37 (374)
322 PRK12775 putative trifunctiona 70.6 2.7 5.8E-05 47.0 2.2 26 1-30 440-465 (1006)
323 PTZ00058 glutathione reductase 70.3 17 0.00037 37.9 7.9 60 107-186 278-338 (561)
324 TIGR01316 gltA glutamate synth 69.3 3 6.4E-05 42.2 2.1 26 1-30 143-168 (449)
325 PLN02546 glutathione reductase 68.7 19 0.0004 37.6 7.8 61 107-187 293-353 (558)
326 PRK13748 putative mercuric red 68.6 19 0.00041 37.5 8.0 58 107-186 310-367 (561)
327 PF13434 K_oxygenase: L-lysine 68.4 11 0.00024 36.5 5.7 45 119-182 290-339 (341)
328 TIGR03452 mycothione_red mycot 68.3 8.8 0.00019 38.8 5.2 32 329-365 295-326 (452)
329 PRK12778 putative bifunctional 68.2 3.3 7.2E-05 44.9 2.3 36 329-369 715-750 (752)
330 KOG2311 NAD/FAD-utilizing prot 68.1 8 0.00017 38.6 4.5 64 104-182 121-184 (679)
331 PRK12810 gltD glutamate syntha 67.4 3.5 7.6E-05 42.0 2.1 37 329-370 430-466 (471)
332 TIGR02053 MerA mercuric reduct 67.1 3.9 8.4E-05 41.5 2.4 24 1-28 10-33 (463)
333 TIGR03378 glycerol3P_GlpB glyc 66.8 4 8.6E-05 40.6 2.3 25 1-29 10-34 (419)
334 PRK06467 dihydrolipoamide dehy 64.8 23 0.00051 36.0 7.6 59 107-187 215-277 (471)
335 PRK11749 dihydropyrimidine deh 64.5 4.6 0.0001 40.9 2.4 37 329-370 417-453 (457)
336 TIGR02462 pyranose_ox pyranose 64.2 5 0.00011 41.5 2.5 27 1-31 10-36 (544)
337 TIGR03467 HpnE squalene-associ 63.7 9.1 0.0002 37.9 4.3 58 5-66 1-65 (419)
338 TIGR01816 sdhA_forward succina 63.0 27 0.00059 36.5 7.8 60 107-186 119-183 (565)
339 PRK12809 putative oxidoreducta 62.6 4.8 0.0001 42.8 2.1 36 329-369 600-635 (639)
340 PLN02568 polyamine oxidase 62.0 5.3 0.00011 41.4 2.3 36 330-368 500-535 (539)
341 TIGR01318 gltD_gamma_fam gluta 62.0 5.4 0.00012 40.6 2.3 26 1-30 151-176 (467)
342 PRK12814 putative NADPH-depend 61.4 5.1 0.00011 42.6 2.1 38 329-371 466-503 (652)
343 TIGR01292 TRX_reduct thioredox 61.1 30 0.00065 32.3 7.2 56 110-185 179-239 (300)
344 PLN02529 lysine-specific histo 61.0 5.1 0.00011 43.0 2.0 27 1-31 170-196 (738)
345 PTZ00363 rab-GDP dissociation 60.9 6.6 0.00014 39.6 2.7 27 1-31 14-40 (443)
346 PLN02328 lysine-specific histo 60.5 5.2 0.00011 43.3 2.0 27 1-31 248-274 (808)
347 PRK10262 thioredoxin reductase 60.5 32 0.00069 32.8 7.3 57 109-185 187-249 (321)
348 PRK13984 putative oxidoreducta 60.4 9.9 0.00022 40.1 4.0 35 329-369 568-602 (604)
349 TIGR03169 Nterm_to_SelD pyridi 59.9 14 0.00031 35.9 4.9 43 328-370 270-312 (364)
350 PRK07208 hypothetical protein; 59.7 25 0.00054 35.8 6.7 27 1-31 14-40 (479)
351 PRK05329 anaerobic glycerol-3- 59.5 5.6 0.00012 39.8 1.9 38 330-367 381-419 (422)
352 KOG1335 Dihydrolipoamide dehyd 59.5 39 0.00084 33.1 7.2 59 107-185 252-315 (506)
353 PRK12771 putative glutamate sy 59.1 6.3 0.00014 41.2 2.3 37 329-370 409-445 (564)
354 KOG0399 Glutamate synthase [Am 58.6 8.3 0.00018 42.7 3.0 26 1-30 1795-1820(2142)
355 KOG1800 Ferredoxin/adrenodoxin 58.1 9.2 0.0002 37.1 2.9 28 1-30 30-57 (468)
356 PRK12770 putative glutamate sy 56.5 7.8 0.00017 37.7 2.3 35 329-368 315-349 (352)
357 COG1252 Ndh NADH dehydrogenase 55.6 31 0.00068 34.2 6.2 59 107-190 209-269 (405)
358 PLN02676 polyamine oxidase 54.8 7.7 0.00017 39.7 2.0 38 330-370 438-475 (487)
359 PRK05675 sdhA succinate dehydr 53.7 53 0.0011 34.4 8.0 61 107-186 126-191 (570)
360 TIGR01317 GOGAT_sm_gam glutama 53.2 8.9 0.00019 39.2 2.2 37 329-370 444-480 (485)
361 PRK12835 3-ketosteroid-delta-1 52.9 7.9 0.00017 40.6 1.8 27 1-31 21-47 (584)
362 PTZ00052 thioredoxin reductase 52.7 8.8 0.00019 39.4 2.1 23 1-27 15-37 (499)
363 TIGR03140 AhpF alkyl hydropero 50.2 46 0.001 34.3 6.9 35 330-368 478-512 (515)
364 PF00732 GMC_oxred_N: GMC oxid 50.1 12 0.00026 35.2 2.4 64 107-185 192-260 (296)
365 KOG0685 Flavin-containing amin 49.6 34 0.00074 34.3 5.4 28 1-31 31-58 (498)
366 PRK12835 3-ketosteroid-delta-1 48.0 68 0.0015 33.7 7.8 58 109-185 215-276 (584)
367 PRK02106 choline dehydrogenase 47.5 14 0.0003 38.6 2.6 26 1-29 15-40 (560)
368 TIGR01810 betA choline dehydro 47.1 46 0.001 34.4 6.4 61 106-185 192-257 (532)
369 COG3634 AhpF Alkyl hydroperoxi 44.2 41 0.00088 32.4 4.7 60 106-183 265-324 (520)
370 KOG1336 Monodehydroascorbate/f 44.1 39 0.00084 33.9 4.8 38 123-182 142-179 (478)
371 COG3075 GlpB Anaerobic glycero 42.7 17 0.00037 34.6 2.1 26 1-30 12-37 (421)
372 PF03721 UDPG_MGDP_dh_N: UDP-g 41.9 17 0.00037 31.8 1.9 24 2-29 11-34 (185)
373 PF00732 GMC_oxred_N: GMC oxid 41.3 64 0.0014 30.2 5.9 28 1-31 10-37 (296)
374 PLN03000 amine oxidase 40.8 17 0.00036 39.8 2.0 27 1-31 194-220 (881)
375 TIGR01810 betA choline dehydro 39.5 25 0.00055 36.4 3.0 25 1-29 9-34 (532)
376 PRK12810 gltD glutamate syntha 36.7 89 0.0019 31.8 6.4 26 1-30 153-178 (471)
377 PRK02705 murD UDP-N-acetylmura 36.3 25 0.00055 35.5 2.4 26 1-30 10-35 (459)
378 PTZ00153 lipoamide dehydrogena 35.9 1.4E+02 0.003 32.0 7.8 60 108-186 354-429 (659)
379 KOG1238 Glucose dehydrogenase/ 35.2 47 0.001 34.6 4.1 26 2-30 68-93 (623)
380 PRK15317 alkyl hydroperoxide r 34.6 1.1E+02 0.0024 31.5 6.9 37 330-370 477-513 (517)
381 PLN02976 amine oxidase 34.2 24 0.00052 40.8 1.9 49 123-181 946-994 (1713)
382 PF10819 DUF2564: Protein of u 33.2 43 0.00093 24.4 2.4 33 335-367 19-52 (79)
383 COG3573 Predicted oxidoreducta 32.5 35 0.00077 32.6 2.4 26 1-30 15-40 (552)
384 COG2303 BetA Choline dehydroge 32.4 39 0.00085 35.1 3.1 25 1-29 17-41 (542)
385 COG3486 IucD Lysine/ornithine 31.7 1.7E+02 0.0037 29.0 6.9 51 121-190 291-346 (436)
386 PRK12770 putative glutamate sy 28.9 1.1E+02 0.0023 29.7 5.3 26 1-30 28-53 (352)
387 TIGR02462 pyranose_ox pyranose 28.4 2.1E+02 0.0045 29.8 7.4 58 119-190 225-285 (544)
388 TIGR03197 MnmC_Cterm tRNA U-34 27.5 35 0.00076 33.5 1.7 20 6-29 1-20 (381)
389 KOG2495 NADH-dehydrogenase (ub 27.3 2.1E+02 0.0045 28.6 6.7 46 116-184 282-329 (491)
390 PRK11749 dihydropyrimidine deh 27.0 1.5E+02 0.0033 29.9 6.3 26 1-30 150-175 (457)
391 PF01210 NAD_Gly3P_dh_N: NAD-d 26.7 55 0.0012 27.5 2.5 24 2-29 10-33 (157)
392 PLN02785 Protein HOTHEAD 26.7 49 0.0011 34.8 2.6 25 1-30 65-89 (587)
393 TIGR01316 gltA glutamate synth 25.4 2.1E+02 0.0045 28.9 6.8 33 330-367 416-448 (449)
394 PF00996 GDI: GDP dissociation 22.7 2.9E+02 0.0063 27.9 7.0 55 107-181 232-286 (438)
395 KOG3851 Sulfide:quinone oxidor 22.1 90 0.002 29.8 3.1 31 158-188 119-149 (446)
396 PRK02106 choline dehydrogenase 21.5 1.7E+02 0.0036 30.6 5.4 60 107-185 200-264 (560)
397 COG1148 HdrA Heterodisulfide r 21.2 1.2E+02 0.0026 30.8 3.9 68 109-196 416-493 (622)
398 COG0569 TrkA K+ transport syst 21.1 68 0.0015 29.0 2.1 55 2-63 11-65 (225)
399 KOG1346 Programmed cell death 20.3 1.6E+02 0.0035 29.3 4.4 58 100-185 255-312 (659)
No 1
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=4.4e-51 Score=405.21 Aligned_cols=383 Identities=34% Similarity=0.576 Sum_probs=308.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCC-CCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKS-NFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 79 (451)
|+||++|+.|++ +|++|+||||.+.+... ++ ....++..|+++++++|+++|+++++.+.+..+...+.+
T Consensus 13 paGl~~A~~La~----~G~~v~viE~~~~~~~~~g~-----~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 13 MVGLAVACGLQG----SGLRVAVLEQRVPEPLAADA-----PPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred HHHHHHHHHHhh----CCCEEEEEeCCCCcccccCC-----CCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 689999999999 59999999999876321 11 234578899999999999999999998866557788888
Q ss_pred EeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 80 WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
|+.+......+.......+..++.++|..|+++|.+.+.+.++++++++++|++++. .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~--------------------~~~ 143 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW--------------------GEN 143 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------------cCC
Confidence 876543444454333333445789999999999999999876699999999999976 446
Q ss_pred eeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCc-e
Q 013000 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF-S 237 (451)
Q Consensus 160 ~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~-~ 237 (451)
.+.|++.||++++||+||||||++|.||+.++++.....+...++.+.++.+.++ ...++.|.+++++.++|+.++. .
T Consensus 144 ~v~v~~~~g~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 223 (400)
T PRK08013 144 EAFLTLKDGSMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGDGILAFLPLSDPHLC 223 (400)
T ss_pred eEEEEEcCCCEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCCCCCEEEEEEcCCCCEEEEECCCCCeE
Confidence 6889999999999999999999999999999998887778888888887766554 4456778888899999998754 6
Q ss_pred EEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 238 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
.++|..+............+.|.+.+...+..... ..........|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~----------------------------------~~~~~~~~~~~ 269 (400)
T PRK08013 224 SIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLG----------------------------------LCELESERQVF 269 (400)
T ss_pred EEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHhhC----------------------------------ceEecCCccEE
Confidence 78888876654444455667777776653320000 01112223347
Q ss_pred ecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013000 318 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 397 (451)
Q Consensus 318 ~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 397 (451)
++....+++|..|||+|+|||||.++|+.|||+|+||+||..|+++|...+..+.+.....+|+.|+++|++++..++..
T Consensus 270 ~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 349 (400)
T PRK08013 270 PLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAG 349 (400)
T ss_pred ecceeecccccCCcEEEEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999999999999999999999999999999999999999987655433333468999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCCCCCC
Q 013000 398 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLP 446 (451)
Q Consensus 398 s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~~~~~ 446 (451)
++.+..+++..+++...+|+..+.++..+|.+++++++.++|+..+|..
T Consensus 350 ~~~~~~l~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 398 (400)
T PRK08013 350 MQGFRDLFAGNNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEW 398 (400)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHccCcCCccc
Confidence 9999999999999999999999999999999999999999998766654
No 2
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=3.8e-50 Score=399.51 Aligned_cols=382 Identities=36% Similarity=0.589 Sum_probs=312.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCC-CCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSN-PALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 79 (451)
|+||++|+.|++ +|++|+|||+. +.+ ..+ ..+..+++.|+++++++|+++|+++++.+....+...+.+
T Consensus 14 ~~Gl~~A~~L~~----~G~~v~viE~~~~~~-~~~-----~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 14 MVGLALAAALKE----SDLRIAVIEGQLPEE-ALN-----ELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred HHHHHHHHHHHh----CCCEEEEEcCCCCcc-ccc-----CCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 689999999999 59999999997 322 111 1234678999999999999999999998865556788889
Q ss_pred EeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 80 WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
|+.+......++......+..++.++|..|.+.|++.+.+.++++++++++|++++. .+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~--------------------~~~ 143 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV--------------------GES 143 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe--------------------eCC
Confidence 987755555665444444456888999999999999998876699999999999976 446
Q ss_pred eeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCC-Cce
Q 013000 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGD-NFS 237 (451)
Q Consensus 160 ~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~-~~~ 237 (451)
.+.|.+.||++++||+||||||++|.||++++.......++..++.+.+..+.++ ...++.|.+++++.++|+.+ +..
T Consensus 144 ~~~v~~~~g~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lp~~~~~~~ 223 (405)
T PRK08850 144 EAWLTLDNGQALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVDPHNSVARQIFTPQGPLAFLPMSEPNMS 223 (405)
T ss_pred eEEEEECCCCEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccCCCCCEEEEEEcCCCceEEEECCCCCeE
Confidence 6889999999999999999999999999999988877778888888888765544 55677888999999999986 456
Q ss_pred EEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 238 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
+++|..+..........+.+++.+.+.+.+...++ ..........|
T Consensus 224 ~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------------------~~~~~~~~~~~ 269 (405)
T PRK08850 224 SIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLG----------------------------------LCEVVGERQAF 269 (405)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhC----------------------------------cEEEcccccEE
Confidence 88898877655555566677787777664431000 01222233457
Q ss_pred ecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013000 318 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 397 (451)
Q Consensus 318 ~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 397 (451)
|+....+++|.++||+|+|||||.|+|+.|||+|+||+||..|+++|......+.+.....+|+.|+++|++++..++..
T Consensus 270 pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~ 349 (405)
T PRK08850 270 PLKMRYARDFVRERVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAA 349 (405)
T ss_pred ecceeeccccccCcEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHH
Confidence 88777789999999999999999999999999999999999999999987754444445789999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCC-CCCC
Q 013000 398 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR-LPLP 446 (451)
Q Consensus 398 s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~-~~~~ 446 (451)
++.+.++|+..++...++|+..+.++..+|.+++.+++..+|+.. +|..
T Consensus 350 ~~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~ 399 (405)
T PRK08850 350 MQGFRDLFSGSNPAKKLVRGIGMSLAGQLPGAKDEIMKRALGLKGELPEL 399 (405)
T ss_pred HHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhCCCCCCchh
Confidence 999999999999999999999999999999999999999999654 5554
No 3
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2e-49 Score=389.86 Aligned_cols=361 Identities=29% Similarity=0.458 Sum_probs=292.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++ +|++|+|+|+.+.+... ....++++.|+++++++|+++|+++.+...+. ++..+.++
T Consensus 11 ~~Gl~~A~~L~~----~G~~v~l~E~~~~~~~~------~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~ 79 (374)
T PRK06617 11 LSGMLTALSFAQ----KGIKTTIFESKSVKSPE------FFKDIRTTALTPHSKNFLFSIDIWEELEKFVA-EMQDIYVV 79 (374)
T ss_pred HHHHHHHHHHHc----CCCeEEEecCCCCCCCc------cCcCceEEEeCHHHHHHHHHCCcHHHHHhhcC-CCcEEEEE
Confidence 689999999999 59999999998654111 12346799999999999999999999976554 67788888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.++.....++.. ....++|.++|.+|++.|++.+.+.+++++++++++++++. .++.
T Consensus 80 ~~~g~~~~~~~~~--~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~--------------------~~~~ 137 (374)
T PRK06617 80 DNKASEILDLRND--ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS--------------------HNDY 137 (374)
T ss_pred ECCCceEEEecCC--CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE--------------------cCCe
Confidence 8777666666542 23446899999999999999999987799999999999976 4466
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCc-eE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF-SN 238 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~-~~ 238 (451)
+.|.+.++ +++||+||||||++|.||+.++.+.....+ +.++.+.++.+.++ ...++.|.+.|+++++|+.++. ..
T Consensus 138 v~v~~~~~-~~~adlvIgADG~~S~vR~~l~~~~~~~~y-~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lPl~~~~~~~ 215 (374)
T PRK06617 138 SIIKFDDK-QIKCNLLIICDGANSKVRSHYFANEIEKPY-QTALTFNIKHEKPHENCAMEHFLPLGPFALLPLKDQYASS 215 (374)
T ss_pred EEEEEcCC-EEeeCEEEEeCCCCchhHHhcCCCcccccC-CeEEEEEEeccCCCCCEEEEEecCCCCEEEeECCCCCeEE
Confidence 88898777 899999999999999999999877655555 67777777765555 4467788899999999999875 67
Q ss_pred EEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeee
Q 013000 239 IVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (451)
++|..+.+........+.+.+.+.+...+. + ..+ . +........||
T Consensus 216 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~--------------~-i~~~~~~~~~~ 261 (374)
T PRK06617 216 VIWSTSSDQAALIVNLPVEEVRFLTQRNAG----N---------------SLG--------------K-ITIDSEISSFP 261 (374)
T ss_pred EEEeCCHHHHHHHHcCCHHHHHHHHHHhhc----h---------------hcC--------------c-eeeccceeEEE
Confidence 889887554444444455566555443221 0 000 0 11222345588
Q ss_pred cccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHH
Q 013000 319 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL 398 (451)
Q Consensus 319 ~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s 398 (451)
+....+++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|.. ..+|+.|+++|++++..++..+
T Consensus 262 l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~~La~~L~~----------~~~L~~Ye~~R~~~~~~~~~~t 331 (374)
T PRK06617 262 LKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIEILSMIVSN----------NGTLQEYQKLRQEDNFIMYKLT 331 (374)
T ss_pred eeeeeccceecCCEEEEEcccccCCCCccccHHHHHHHHHHHHHHHcC----------cchHHHHHHHHhHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999831 2479999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 399 DGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 399 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
+.+.++|+...++...+|+..+.+++.+|++++.+++..+|.
T Consensus 332 ~~l~~~f~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 373 (374)
T PRK06617 332 DELNNIFSNYSKNLRCLRQIGFKVINNFKPIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999985
No 4
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.3e-49 Score=391.64 Aligned_cols=385 Identities=36% Similarity=0.641 Sum_probs=304.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|||+.+.+.... ........+++.|+++++++|+++|+++++.+....+...+.++
T Consensus 12 ~aGl~~A~~L~~----~G~~v~viE~~~~~~~~~--~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 85 (405)
T PRK05714 12 MVGSALALALQG----SGLEVLLLDGGPLSVKPF--DPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEMQVW 85 (405)
T ss_pred HHHHHHHHHHhc----CCCEEEEEcCCCcccccc--ccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeEEEE
Confidence 689999999999 599999999997321000 00012345678899999999999999999987555467788888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.++.....|.......+..++.++|..|.+.|.+.+.+.+ ++++++++|++++. .+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~ 144 (405)
T PRK05714 86 DGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSD-IGLLANARLEQMRR--------------------SGDD 144 (405)
T ss_pred cCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCC-CEEEcCCEEEEEEE--------------------cCCe
Confidence 87766556665433333456788999999999999998876 99999999999976 4456
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCC----
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN---- 235 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~---- 235 (451)
+.|++.||+++.+|+||||||++|.||+.+++......+...++...+....++ ...|+.+.+.++++++|+..+
T Consensus 145 v~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~~~~ 224 (405)
T PRK05714 145 WLLTLADGRQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSEPHRATAWQRFTDDGPLAFLPLERDGDEH 224 (405)
T ss_pred EEEEECCCCEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCCCCCCEEEEEcCCCCCeEEeeCCCCCCCC
Confidence 889999999999999999999999999999887766667677666666554443 456777889999999999643
Q ss_pred ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcce
Q 013000 236 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERM 315 (451)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
...++|..++.........+.+.+.+.+.+.|..... .+.. .....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------~~~~-~~~~~ 270 (405)
T PRK05714 225 WCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLG---------------------------------EVLS-ADPRL 270 (405)
T ss_pred eEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhC---------------------------------Ccee-cCCcc
Confidence 2456787766554444456677777777765431000 0111 12223
Q ss_pred eeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013000 316 VFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395 (451)
Q Consensus 316 ~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 395 (451)
.|++....+++|..+||+|||||||+|+|+.|||+|+||+||..|+++|..+...+.+.....+|+.|+++|++++.+++
T Consensus 271 ~~~l~~~~~~~~~~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~ 350 (405)
T PRK05714 271 CVPLRQRHAKRYVEPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALM 350 (405)
T ss_pred EEecceeehhhhccCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 47877778899999999999999999999999999999999999999998766544334446899999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC-CCCCCC
Q 013000 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE-QRLPLP 446 (451)
Q Consensus 396 ~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~-~~~~~~ 446 (451)
..++.+.++|+..+++...+|+..+..+...|.+++.+++.++|. ..+|.+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~~~~~~~~ 402 (405)
T PRK05714 351 AAMEGFERLFQADPLPLRWLRNTGLKLVDQMPEAKALFVRQALGLSGDLPEL 402 (405)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHhcCCCCCchh
Confidence 999999999999999999999999999999999999999999996 446654
No 5
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.6e-48 Score=390.51 Aligned_cols=418 Identities=44% Similarity=0.769 Sum_probs=316.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 78 (451)
|+||++|+.|++.+..+|++|+|||+++.+...+ ..........+++.|+++++++|+++|+++++.+.+..+...+.
T Consensus 10 p~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~~~~~~~~~ 89 (437)
T TIGR01989 10 PVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDRIQPFGRMQ 89 (437)
T ss_pred HHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhcCCceeeEE
Confidence 6899999999982111399999999976553221 00000012468999999999999999999999886655677888
Q ss_pred EEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCC--CceEEcCCeeEEEEeCCCCCCcccCCCCCcccccc
Q 013000 79 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE--FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT 156 (451)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g--~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+++..+.....|+... .....++.++|..|.+.|.+.+.+.+ +++++++++|++++.... .++ +
T Consensus 90 ~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~------~~~-------~ 155 (437)
T TIGR01989 90 VWDGCSLALIRFDRDN-GKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSK------YPN-------D 155 (437)
T ss_pred EecCCCCceEEeecCC-CCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccc------ccc-------C
Confidence 8887766566666433 23455789999999999999998876 699999999999975000 001 1
Q ss_pred CCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC-C-CCeeEEEecCCCcEEEeecCC
Q 013000 157 KGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E-NYCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 157 ~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~p~~~ 234 (451)
++..++|++.+|++++||+||||||++|.||+++++......|.+.++.+.+..+. + ....++.|.++|++.++|+++
T Consensus 156 ~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~~~~~~~~~~f~~~g~~~~lPl~~ 235 (437)
T TIGR01989 156 NSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEATENDVAWQRFLPTGPIALLPLPD 235 (437)
T ss_pred CCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccCCCCCeEEEEECCCCCEEEeECCC
Confidence 34668899999999999999999999999999999999888888888888887653 2 367788899999999999999
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccc---cccccCCCcceeeec
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS---AKECFEVPPRVVKLA 311 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 311 (451)
+..+++|..++.........+.+++.+.+...+..++.+.+.... ......++....... ....+.+++.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T TIGR01989 236 NNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYL--LDYAMEKLNEDIGFRTEGSKSCFQVPPRVIGVV 313 (437)
T ss_pred CCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccc--cccccccccccccccccccccccccCchhheee
Confidence 989999998877666666678888888887766322222111000 000011111100000 001111222222222
Q ss_pred -CcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchh
Q 013000 312 -SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 390 (451)
Q Consensus 312 -~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~ 390 (451)
.....||+....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|....+.+.+.....+|+.|+++|+++
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~ 393 (437)
T TIGR01989 314 DKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSLKPYERERYAK 393 (437)
T ss_pred cccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 2235688888889999999999999999999999999999999999999999998876554444467999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHH
Q 013000 391 NIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII 434 (451)
Q Consensus 391 ~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~ 434 (451)
+..++..++.+.++|...+++...+|+..+.++..+|+++++++
T Consensus 394 ~~~v~~~t~~l~~l~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~ 437 (437)
T TIGR01989 394 NVVLLGLVDKLHKLYATDFPPVVALRTFGLNLTNYIGPLKNFIM 437 (437)
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhhhCHHhHHhhC
Confidence 99999999999999999999999999999999999999999874
No 6
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=2.4e-48 Score=385.26 Aligned_cols=376 Identities=34% Similarity=0.556 Sum_probs=306.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++ +|++|+||||.+.++..++ ....+.+.++++++++|+++|+++.+.+....+...+.+|
T Consensus 16 ~aGl~~A~~La~----~G~~v~liE~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (392)
T PRK08773 16 VVGAACALALAD----AGLSVALVEGREPPRWQAD-----QPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRVW 86 (392)
T ss_pred HHHHHHHHHHhc----CCCEEEEEeCCCCcccccC-----CCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEEE
Confidence 789999999999 5999999999987643222 2335678999999999999999999987544466777888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+..+.....++.........++.++|..|.+.|.+.+.+.+ ++++++++|++++. .++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~ 145 (392)
T PRK08773 87 DAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAG-VQLHCPARVVALEQ--------------------DADR 145 (392)
T ss_pred eCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeEEEEEe--------------------cCCe
Confidence 76554455555433344456789999999999999998876 99999999999976 4466
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
+.|++.+|+++.+|+||+|||.+|.+|+.+++......+...++.+.++.+.++ ...++.|.+++++.++|++++...+
T Consensus 146 v~v~~~~g~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~lP~~~~~~~~ 225 (392)
T PRK08773 146 VRLRLDDGRRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHPHQATAWQRFLPTGPLALLPFADGRSSI 225 (392)
T ss_pred EEEEECCCCEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCCCCCEEEEEeCCCCcEEEEECCCCceEE
Confidence 888888999999999999999999999999887766666677777766665444 5667788899999999999988889
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
+|..+..........+.+.+.+.+...+.. +... .........|++
T Consensus 226 ~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~---------------------------------~~~~~~~~~~~l 271 (392)
T PRK08773 226 VWTLPDAEAERVLALDEAAFSRELTQAFAA-RLGE---------------------------------VRVASPRTAFPL 271 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhh-hhcC---------------------------------eEecCCccEeec
Confidence 999876655444556677777777775541 1100 011122335777
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....+++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|..+++.+.+.....+|+.|+++|+++...++....
T Consensus 272 ~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~ 351 (392)
T PRK08773 272 RRQLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFD 351 (392)
T ss_pred hhhhhhhhcCCcEEEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999998876554555678999999999999998999889
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
.+.++|...+++..++|+..+.++..+|.+++.++++++|+
T Consensus 352 ~l~~~f~~~~~~~~~~r~~~l~~~~~~~~~k~~~~~~~~g~ 392 (392)
T PRK08773 352 AINRVFSNDEMHLTLLRGSVLGLAGKLPPLVDALWKRASGV 392 (392)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999985
No 7
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=2.8e-48 Score=383.00 Aligned_cols=372 Identities=33% Similarity=0.494 Sum_probs=315.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|++|++ +|++|+||||.+.. ....++++.|+++++++|+++|+.+++...+..+.....++
T Consensus 12 ~aGl~lA~~L~~----~G~~V~l~E~~~~~---------~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 12 PAGLALALALAR----AGLDVTLLERAPRE---------LLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred HHHHHHHHHHHh----CCCcEEEEccCccc---------cccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 689999999999 59999999999321 24445899999999999999999899988887666666665
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+... ....++........+++.++|.+|.++|.+.+.+.++++++++++|+.++. .++.
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~--------------------~~~~ 137 (387)
T COG0654 79 DGGR-RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ--------------------DGDG 137 (387)
T ss_pred cCCc-eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE--------------------cCCc
Confidence 5443 455565545454667899999999999999999998899999999999987 4566
Q ss_pred eEEEeC-CCcEEEeeEEEeecCCCChhhhhhC-CCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCce
Q 013000 161 AKLDLS-DGTSLYAKLVVGADGGKSRVRELAG-FKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFS 237 (451)
Q Consensus 161 v~v~~~-dg~~~~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~ 237 (451)
+++++. ||+++.||+||||||.||.||+.++ .......|...++...+..+.++ ...+..|.+.+++.++|++++..
T Consensus 138 v~v~l~~dG~~~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 217 (387)
T COG0654 138 VTVTLSFDGETLDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPEEPHEGRAGERFTHAGPFALLPLPDNRS 217 (387)
T ss_pred eEEEEcCCCcEEecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecCCCCCCeEEEEecCCCceEEEecCCCce
Confidence 778888 9999999999999999999999999 55555588899999988887444 78888999999999999998889
Q ss_pred EEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 238 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
.++|+.+..........+.+.+...+...++.. .+............|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~ 265 (387)
T COG0654 218 SVVWSLPPGPAEDLQGLSDEEFLRELQRRLGER--------------------------------DPLGRVTLVSSRSAF 265 (387)
T ss_pred eEEEECChhhHHHHhcCCHHHHHHHHHHhcCcc--------------------------------cccceEEEccccccc
Confidence 999999998888888889899988888855410 000113334445568
Q ss_pred ecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013000 318 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 397 (451)
Q Consensus 318 ~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 397 (451)
|+....+.+|..+||+|+|||||.|+|+.|||+|+||+||..|+++|..+...+.+ ..+|+.|+++|++++..++..
T Consensus 266 pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~---~~~L~~Y~~~R~~~~~~~~~~ 342 (387)
T COG0654 266 PLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGAD---AAALAAYEARRRPRAEAIQKL 342 (387)
T ss_pred cccchhhhheecCcEEEEeeccccCCCccccchhhhhhhHHHHHHHHHHHhhcCcc---HHHHHHHHHhhhhHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999998774322 789999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 398 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 398 s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
++.+.+.++...++...+|+..+.++...|.+++.+.+...|+.
T Consensus 343 s~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 386 (387)
T COG0654 343 SRALGRLFSADGPFARFLRNLGLRLLDRLPPLREALARLAAGLV 386 (387)
T ss_pred HHHHhhhhccCCcHHHHHHHHHHHhhccCccHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999998887764
No 8
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=9.5e-48 Score=384.19 Aligned_cols=379 Identities=31% Similarity=0.546 Sum_probs=297.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+||||++.++. ...++++.|+++++++|+++|+++++...+. +...+.++
T Consensus 28 ~aGl~~A~~L~~----~G~~v~v~E~~~~~~~--------~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~ 94 (415)
T PRK07364 28 IVGLTLAAALKD----SGLRIALIEAQPAEAA--------AAKGQAYALSLLSARIFEGIGVWEKILPQIG-KFRQIRLS 94 (415)
T ss_pred HHHHHHHHHHhc----CCCEEEEEecCCcccc--------CCCCcEEEechHHHHHHHHCChhhhhHhhcC-CccEEEEE
Confidence 689999999999 5999999999987632 1235689999999999999999999987655 56677777
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+..+.....+..........++.+.+..|.+.|++.+.+.++++++++++|++++. .++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~--------------------~~~~ 154 (415)
T PRK07364 95 DADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY--------------------QQDA 154 (415)
T ss_pred eCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe--------------------cCCe
Confidence 76654455555333333345566666689999999998876799999999999976 4456
Q ss_pred eEEEeCCC---cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCc
Q 013000 161 AKLDLSDG---TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF 236 (451)
Q Consensus 161 v~v~~~dg---~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~ 236 (451)
+.|+++++ .+++||+||||||++|.||+.++.......+...++.+.+..+.++ ...+..|.+.++++++|++++.
T Consensus 155 ~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~ 234 (415)
T PRK07364 155 ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAPHNDIAYERFWPSGPFAILPLPGNR 234 (415)
T ss_pred eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCCC
Confidence 77888643 3699999999999999999999887766666666666666654433 3344556688899999999888
Q ss_pred eEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCccee
Q 013000 237 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 316 (451)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (451)
.+++|..+.+........+.+++.+.+.+.+. ++... + ........
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~--------------------------------~-~~~~~~~~ 280 (415)
T PRK07364 235 CQIVWTAPHAQAKALLALPEAEFLAELQQRYG-DQLGK--------------------------------L-ELLGDRFL 280 (415)
T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhhcC--------------------------------c-eecCCCce
Confidence 88888876554444445566777777776543 11110 0 11122234
Q ss_pred eecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHH
Q 013000 317 FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 396 (451)
Q Consensus 317 ~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~ 396 (451)
|++....+++|..|||+|||||||+++|+.|||+|+||+||..|+++|....+.+.+.....+|+.|++.|+++...++.
T Consensus 281 ~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~ 360 (415)
T PRK07364 281 FPVQLMQSDRYVQHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILG 360 (415)
T ss_pred ecchhhhhhhhcCCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 77776678899999999999999999999999999999999999999988765443443458999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCC-CCCC
Q 013000 397 VLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR-LPLP 446 (451)
Q Consensus 397 ~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~-~~~~ 446 (451)
.++.+..+++.++++..++|+..+.++..+|.+++.+++.++|+.. .|..
T Consensus 361 ~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 411 (415)
T PRK07364 361 FTDLLDRLFSNQWWPLVVVRRLGLWLLRHVPPLKRLALRLMTGLKGRTPQL 411 (415)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHcCCCccCchh
Confidence 9999999999999999999999999999999999999999999765 5543
No 9
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.3e-47 Score=374.76 Aligned_cols=371 Identities=32% Similarity=0.575 Sum_probs=292.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|||+.+....... .....+++.|+|+++++|+++|+++.+.+....+...+.+|
T Consensus 13 ~aGl~~A~~L~~----~G~~v~l~E~~~~~~~~~~----~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~~ 84 (384)
T PRK08849 13 MVGAATALGFAK----QGRSVAVIEGGEPKAFEPS----QPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLETW 84 (384)
T ss_pred HHHHHHHHHHHh----CCCcEEEEcCCCcccCCCC----CCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEEE
Confidence 689999999999 5999999998863210000 01134568999999999999999999987544456677776
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+... ....+..........++.+.|..|..+|.+.+.+.++++++++++|++++. .++.
T Consensus 85 ~~~~-~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~--------------------~~~~ 143 (384)
T PRK08849 85 EHPE-CRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF--------------------SAEG 143 (384)
T ss_pred eCCC-ceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE--------------------cCCe
Confidence 6432 233444333333445788888899999999988877799999999999976 4566
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
++|+++||.++++|+||||||.+|.||+.++.......+.+.++.+.+..+.++ ...++.|.+.|+..++|+.++...+
T Consensus 144 ~~v~~~~g~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~pl~~~~~~~ 223 (384)
T PRK08849 144 NRVTLESGAEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQPQQDITWQQFTPSGPRSFLPLCGNQGSL 223 (384)
T ss_pred EEEEECCCCEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCCCCCEEEEEeCCCCCEEEeEcCCCceEE
Confidence 889999999999999999999999999999887776777777766666655444 5677778888888889998877778
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
+|+..+.........+.+.+.+.+.+.++. +-. . + . ......||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-------------------------------~-~-~-~~~~~~~~l 268 (384)
T PRK08849 224 VWYDSPKRIKQLSAMNPEQLRSEILRHFPA-ELG-------------------------------E-I-K-VLQHGSFPL 268 (384)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHhhh-hhC-------------------------------c-E-E-eccceEeec
Confidence 888765433333345677777877775541 100 0 0 1 112345788
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....+++|..|||+|+|||||.|+|+.|||+|+||+||..|+++|... + ...+.+|+.|+++|+++...++..++
T Consensus 269 ~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~---~--~~~~~~L~~Ye~~R~~~~~~~~~~~~ 343 (384)
T PRK08849 269 TRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNLGFKDVDVLLAETEKQ---G--VLNDASFARYERRRRPDNLLMQTGMD 343 (384)
T ss_pred cccccchhccCCEEEEEcccccCCCCccchHhHHHHHHHHHHHHHHhc---C--CCcHHHHHHHHHHHhHHHHHHHHHHH
Confidence 777889999999999999999999999999999999999999998642 1 13478999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
.+.++|+..+++...+|+..+..+...|++++.+++.++|+
T Consensus 344 ~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 384 (384)
T PRK08849 344 LFYKTFSNSLTPLKFVRNAALKLAENSGPLKTQVLKYALGM 384 (384)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccHHHHHHHHHHHcCC
Confidence 99999999889999999999999999999999999999984
No 10
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=5.6e-47 Score=377.25 Aligned_cols=383 Identities=32% Similarity=0.520 Sum_probs=300.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++++ .|++|+||||.+.... ...++++.|+++++++|+++|+++.+...+. +...+.++
T Consensus 11 ~aGl~~A~~L~~~g--~g~~v~liE~~~~~~~--------~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~-~~~~~~~~ 79 (403)
T PRK07333 11 YVGLALAVALKQAA--PHLPVTVVDAAPAGAW--------SRDPRASAIAAAARRMLEALGVWDEIAPEAQ-PITDMVIT 79 (403)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeCCCcccC--------CCCcceEEecHHHHHHHHHCCChhhhhhhcC-cccEEEEE
Confidence 78999999999951 1499999999986421 2246799999999999999999999987665 66677777
Q ss_pred eCCCcc-----eeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccc
Q 013000 81 DYTGLG-----YTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLF 155 (451)
Q Consensus 81 ~~~~~~-----~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (451)
+..+.. ...+........++++.++|..|.+.|.+.+.+.+ ++++++++|++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~------------------- 139 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALG-IDLREATSVTDFET------------------- 139 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE-------------------
Confidence 654321 12332212223445678999999999999998876 99999999999976
Q ss_pred cCCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCC
Q 013000 156 TKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 156 ~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~ 234 (451)
.+..+.|.+.||+++.+|+||+|||.+|.+|+.+++......+...++.+.++...+. ...+..+.++++++++|+++
T Consensus 140 -~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Pl~~ 218 (403)
T PRK07333 140 -RDEGVTVTLSDGSVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERPHGGRAEEHFLPAGPFAILPLKG 218 (403)
T ss_pred -cCCEEEEEECCCCEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCCCCCEEEEEeCCCCceEEeECCC
Confidence 4567889999999999999999999999999999887666667777777766655433 45666778999999999999
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+..+++|..+............+.+.+.+...+. .+... .......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~---------------------------------~~~~~~~ 264 (403)
T PRK07333 219 NRSSLVWTERTADAERLVALDDLVFEAELEQRFG-HRLGE---------------------------------LKVLGKR 264 (403)
T ss_pred CCeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhh-hhcCc---------------------------------eEeccCc
Confidence 9888888766543333333445556666655443 11000 0111122
Q ss_pred eeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHH
Q 013000 315 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 394 (451)
Q Consensus 315 ~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~ 394 (451)
..|+++...+++|..|||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+...+.+|+.|+++|+++...+
T Consensus 265 ~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~ 344 (403)
T PRK07333 265 RAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRM 344 (403)
T ss_pred cEeechhhhhhhccCCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHH
Confidence 24677666788999999999999999999999999999999999999999988754323345899999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC-CCCCCCCC
Q 013000 395 MAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ-RLPLPLPL 449 (451)
Q Consensus 395 ~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~-~~~~~~~~ 449 (451)
+..++.+.++++..+++...+|+..+.++...|.+++.+++.++|+. .+|.++.-
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 400 (403)
T PRK07333 345 GVTTDVLNRLFSNDSTLLRSVRDIGLGLVDRLPKLKSFFIRQAAGLTGDTPRLLKG 400 (403)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHhCcCCCCchhhcC
Confidence 99999999999999999999999999999999999999999999986 57776653
No 11
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=2.1e-46 Score=371.01 Aligned_cols=376 Identities=39% Similarity=0.697 Sum_probs=298.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+||||.+.++..++ ...++++.|+++++++|+++|+++++.+....+...+.++
T Consensus 9 ~aGl~~A~~L~~----~G~~v~v~Er~~~~~~~~~-----~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 79 (385)
T TIGR01988 9 MVGLALALALAR----SGLKIALIEATPAEAAATP-----GFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVS 79 (385)
T ss_pred HHHHHHHHHHhc----CCCEEEEEeCCCccccCCC-----CCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEE
Confidence 689999999999 5999999999998754332 1245789999999999999999999988333467788888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.++.....+.......+..++.++|..|.+.|.+.+.+.++++++++++|++++. .++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~--------------------~~~~ 139 (385)
T TIGR01988 80 DGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR--------------------HSDH 139 (385)
T ss_pred eCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe--------------------cCCe
Confidence 77655444554322233446789999999999999999887789999999999976 4466
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
+.|+++||+++.+|+||+|||.+|.+|+.++++.....+...++...+..+.+. ...+..+.++++++++|++++..++
T Consensus 140 ~~v~~~~g~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 219 (385)
T TIGR01988 140 VELTLDDGQQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERPHQGTAWERFTPTGPLALLPLPDNRSSL 219 (385)
T ss_pred eEEEECCCCEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEE
Confidence 889999999999999999999999999999877655555566666666554433 3444556788899999999998889
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
+|..+..........+.+++.+.+...+.. +.. . .........|++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------------~-~~~~~~~~~~~~ 265 (385)
T TIGR01988 220 VWTLPPEEAERLLALSDEEFLAELQRAFGS-RLG--------------------------------A-ITLVGERHAFPL 265 (385)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhh-hcC--------------------------------c-eEeccCcceeec
Confidence 898765443333445667777777664431 100 0 011122234676
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....+++|..+||+|+|||||+|+|++|||+|+||+||..|++.|...+..+.+...+.+|+.|+++|++++..++..++
T Consensus 266 ~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~ 345 (385)
T TIGR01988 266 SLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATD 345 (385)
T ss_pred hhhhhhheecCceEEEecccccCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667889999999999999999999999999999999999999998765432333478999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 439 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g 439 (451)
.+..++...++....+|+..++.+..+|.+++++++.++|
T Consensus 346 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (385)
T TIGR01988 346 GLNRLFSNDFPPLRLLRNLGLRLLNLLPPLKNFIARYAMG 385 (385)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999876
No 12
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=373.04 Aligned_cols=378 Identities=26% Similarity=0.444 Sum_probs=296.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|+||.+.++... ....++++.|+++++++|+++|+++++...+..+...+.++
T Consensus 13 ~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~~-----~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 13 PAGLSFARSLAG----SGLKVTLIERQPLAALAD-----PAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred HHHHHHHHHHHh----CCCcEEEEeCCCcccccC-----CCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 689999999999 499999999998752110 12235578899999999999999999987665566777777
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
++.......++.........++.++|..|++.|++.+.+..+++|+++++|++++. .++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~--------------------~~~~ 143 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT--------------------DDDG 143 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE--------------------cCCe
Confidence 66654445554322233446788999999999999987655599999999999976 4456
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
+.|.+.+|+++.+|+||+|||.+|.||+.+++......++...+...+....++ ...+..+..+++++++|+.++..++
T Consensus 144 ~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 223 (392)
T PRK09126 144 AQVTLANGRRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHELPHHHTAWEWFGYGQTLALLPLNGHLSSL 223 (392)
T ss_pred EEEEEcCCCEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccCCCCCEEEEEecCCCCeEEeECCCCCEEE
Confidence 888899999999999999999999999999877665566666555555443333 3445566677889999999988888
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
++..+.+........+.+.+.+.+...+...+.. .........|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 269 (392)
T PRK09126 224 VLTLPPDQIEALLALDPEAFAAEVTARFKGRLGA----------------------------------MRLVSSRHAYPL 269 (392)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccC----------------------------------eEEcCCCcEeec
Confidence 8877655433333456677777666644311100 011122334677
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....+++|..+||+|+|||||.++|+.|||+|+||+||..|+++|...++.+.+...+++|+.|+++|++++..++..++
T Consensus 270 ~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~ 349 (392)
T PRK09126 270 VAVYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATN 349 (392)
T ss_pred hHHHHHHHhhcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667899999999999999999999999999999999999999998876443444578999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
.+..+++..+++...+|++++..+.+.|++++.+++.++|.+
T Consensus 350 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (392)
T PRK09126 350 AIAALYTDDRPPARLLRRAVLRAANRFPPLKQAIAKQLTGRK 391 (392)
T ss_pred HHHHHHCCCchHHHHHHHHHHHHHhhChHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999975
No 13
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=9.5e-46 Score=366.77 Aligned_cols=376 Identities=32% Similarity=0.577 Sum_probs=298.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|||+.+.+...+. .....+...++++++++|+.+|+++.+.+....++..+..+
T Consensus 15 ~aGl~~A~~La~----~G~~V~liE~~~~~~~~~~----~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (391)
T PRK08020 15 MVGAALALGLAQ----HGFSVAVLEHAAPAPFDAD----SQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLETW 86 (391)
T ss_pred HHHHHHHHHHhc----CCCEEEEEcCCCCCccccc----CCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEEE
Confidence 689999999999 4999999999875422111 12345678999999999999999999987554455566655
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+... ....+.......+..+|.++|..|++.|.+.+.+.++++++++++|++++. .++.
T Consensus 87 ~~~~-~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--------------------~~~~ 145 (391)
T PRK08020 87 EWET-AHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR--------------------DDDG 145 (391)
T ss_pred eCCC-CeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE--------------------cCCe
Confidence 4333 233343323333456789999999999999998875599999999999976 4456
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
+.|.+.+|+++++|+||+|||.+|.||+.++.......+.+.++.+.+..+.++ ...++.+.+.|+..++|+.++...+
T Consensus 146 ~~v~~~~g~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 225 (391)
T PRK08020 146 WELTLADGEEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENPPGDSTWQQFTPSGPRAFLPLFDNWASL 225 (391)
T ss_pred EEEEECCCCEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCCCCCEEEEEEcCCCCEEEeECCCCcEEE
Confidence 888889999999999999999999999999988776677777777777766443 5667788888999999998888888
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
+|+..+.........+.+++.+.+...++...+ .+... ....||+
T Consensus 226 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------~~~~~--~~~~~pl 270 (391)
T PRK08020 226 VWYDSPARIRQLQAMSMAQLQQEIAAHFPARLG---------------------------------AVTPV--AAGAFPL 270 (391)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcc---------------------------------ceEec--cccEeec
Confidence 898765444344445666776666654321000 01111 2234777
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....+++|..+|++|+|||||.++|+.|||+|+||+||..|+++|....+.+.+.....+|+.|+++|+++...++..++
T Consensus 271 ~~~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~ 350 (391)
T PRK08020 271 TRRHALQYVQPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMD 350 (391)
T ss_pred ceeehhhhccCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999998765554555578999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
.+.++|+...++.+.+|+..+.+++..|.+++.+++..+|+
T Consensus 351 ~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~g~ 391 (391)
T PRK08020 351 LFYAGFSNNLPPLRFARNLGLMAAQRAGVLKRQALKYALGL 391 (391)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999984
No 14
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=9.5e-46 Score=366.41 Aligned_cols=367 Identities=28% Similarity=0.487 Sum_probs=299.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+ ...++..++++++++|+++|+++++..... ++..+.++
T Consensus 17 ~~Gl~~A~~L~~----~G~~v~liE~~~~~-----------~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~-~~~~~~~~ 80 (388)
T PRK07494 17 PAGLAAAIALAR----AGASVALVAPEPPY-----------ADLRTTALLGPSIRFLERLGLWARLAPHAA-PLQSMRIV 80 (388)
T ss_pred HHHHHHHHHHhc----CCCeEEEEeCCCCC-----------CCcchhhCcHHHHHHHHHhCchhhhHhhcc-eeeEEEEE
Confidence 689999999999 59999999999865 124567889999999999999999987654 67788888
Q ss_pred eCCCcce----eEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccc
Q 013000 81 DYTGLGY----TKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT 156 (451)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+.++... ..+.........++|.++|..|.+.|.+.+.+.++++ +++++|++++.
T Consensus 81 ~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~-------------------- 139 (388)
T PRK07494 81 DATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP-------------------- 139 (388)
T ss_pred eCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE--------------------
Confidence 7654322 2333323334456789999999999999998887666 88999999976
Q ss_pred CCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCC
Q 013000 157 KGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN 235 (451)
Q Consensus 157 ~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~ 235 (451)
.++.+.|++.+|+++++|+||+|||.+|.||+.++.......+.+.++.+.+..+.++ ...++.+.+.|++.++|++++
T Consensus 140 ~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~~Pl~~~ 219 (388)
T PRK07494 140 REDEVTVTLADGTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRPHQNVSTEFHTEGGPFTQVPLPGR 219 (388)
T ss_pred cCCeEEEEECCCCEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCCCCCEEEEEeCCCCcEEEEECCCC
Confidence 4566889999999999999999999999999999988777778888888887766544 344566778899999999988
Q ss_pred ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcce
Q 013000 236 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERM 315 (451)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
..+++|..+.+........+.+++.+.+...+.. +++. ........
T Consensus 220 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~l~~---------------~~~~~~~~ 265 (388)
T PRK07494 220 RSSLVWVVRPAEAERLLALSDAALSAAIEERMQS-------------------MLGK---------------LTLEPGRQ 265 (388)
T ss_pred cEEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhh-------------------hcCC---------------eEEccCCc
Confidence 8889998877655555556777777777664331 0000 11222334
Q ss_pred eeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013000 316 VFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395 (451)
Q Consensus 316 ~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 395 (451)
.||+....+++|..+||+|+|||||.++|++|||+|+||+||..|+++|.... .+.....+|+.|+++|+++...++
T Consensus 266 ~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~ 342 (388)
T PRK07494 266 AWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRT 342 (388)
T ss_pred EeechHHHHHhhccCceEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHH
Confidence 58888877889999999999999999999999999999999999999998742 233457899999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 396 ~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
..+..+.+.|....++...+|+..+.++...|.+++.++++.||++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07494 343 ASVDLLNRSLLSDFLPVQDLRAAGLHLLYSFGPLRRLFMREGLGPG 388 (388)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHhhCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999974
No 15
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=3e-45 Score=362.19 Aligned_cols=371 Identities=31% Similarity=0.523 Sum_probs=289.8
Q ss_pred CcHHHHHHHhcCCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEE
Q 013000 1 MVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g-~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~ 79 (451)
|+||++|+.|++ +| ++|+|+||.+.++...+ ...+++.|+|+++++|+++|+++++...+. +...+.+
T Consensus 9 ~aGl~~A~~L~~----~G~~~v~v~E~~~~~~~~~~------~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~~~ 77 (382)
T TIGR01984 9 LVGLSLALALSR----LGKIKIALIEANSPSAAQPG------FDARSLALSYGSKQILEKLGLWPKLAPFAT-PILDIHV 77 (382)
T ss_pred HHHHHHHHHHhc----CCCceEEEEeCCCccccCCC------CCCeeEeccHHHHHHHHHCCChhhhHhhcC-ccceEEE
Confidence 689999999999 49 99999999998743211 235689999999999999999999877654 4556666
Q ss_pred EeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 80 WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
++........+.......+..+|.++|..|.+.|.+.+.+..+++++++++|++++. .+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~--------------------~~~ 137 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR--------------------NQD 137 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE--------------------cCC
Confidence 554333333343222233445788999999999999998853499999999999976 446
Q ss_pred eeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCC-ce
Q 013000 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN-FS 237 (451)
Q Consensus 160 ~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~-~~ 237 (451)
.++|++.+|+++.||+||+|||.+|.||+.+++......++..++...+....+. ...+..+.+++++.++|.+++ ..
T Consensus 138 ~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 217 (382)
T TIGR01984 138 YVRVTLDNGQQLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPHQGCAFERFTPHGPLALLPLKDNYRS 217 (382)
T ss_pred eEEEEECCCCEEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCCCCEEEEeeCCCCCeEECcCCCCCCE
Confidence 6889999999999999999999999999999877666666677777766654433 334456778889999999988 77
Q ss_pred EEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 238 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
.++|..+..........+.+.+.+.+...+. +. + ..+ ........|
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------------------------~-~~~-~~~~~~~~~ 263 (382)
T TIGR01984 218 SLVWCLPSKQADTIANLPDAEFLAELQQAFG----WR----------------------------L-GKI-TQVGERKTY 263 (382)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHh----hh----------------------------c-cCe-EEcCCccEe
Confidence 7788776554333344566667777666432 00 0 000 111223347
Q ss_pred ecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHH
Q 013000 318 PLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAV 397 (451)
Q Consensus 318 ~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~ 397 (451)
++....+++|..+||+|||||||+|+|++|||+|+||+||..|+++|..... +...+.+|+.|+++|++++..++..
T Consensus 264 ~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~---~~~~~~~l~~Y~~~r~~~~~~~~~~ 340 (382)
T TIGR01984 264 PLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLIDARI---DLGTYALLQEYLRRRQFDQFITIGL 340 (382)
T ss_pred ecchhhhhheecCCEEEEeecccccCCccccchhhhHHHHHHHHHHHHHhcc---CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999999999999987642 2334789999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhC
Q 013000 398 LDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 439 (451)
Q Consensus 398 s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g 439 (451)
++.+..++..+++....+|+..++++.+.|.+++.+++..+|
T Consensus 341 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~~~ 382 (382)
T TIGR01984 341 TDGLNRLFSNHIPLLRALRNLGLLALENFPPLKKRLARQAMG 382 (382)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 999999999988899999999999999999999999998775
No 16
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=4e-45 Score=362.32 Aligned_cols=365 Identities=30% Similarity=0.457 Sum_probs=291.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++++..+|++|+|+|+.+.+. .....+++.|++.++++|+++|++++. . .+...+.++
T Consensus 21 paG~~~A~~L~~~g~~~g~~v~l~e~~~~~~--------~~~~~r~~~l~~~~~~~L~~lg~~~~~---~-~~~~~~~~~ 88 (398)
T PRK06996 21 PVGLALAGWLARRSATRALSIALIDAREPAA--------SANDPRAIALSHGSRVLLETLGAWPAD---A-TPIEHIHVS 88 (398)
T ss_pred HHHHHHHHHHhcCCCcCCceEEEecCCCCCc--------CCCCceEEEecHHHHHHHHhCCCchhc---C-CcccEEEEe
Confidence 7899999999995211246899999987542 123468999999999999999999862 2 245667776
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+........+...+...+..++.++|..|++.|.+.+.+.+ +++++++++++++. .+.+
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g-~~~~~~~~v~~~~~--------------------~~~~ 147 (398)
T PRK06996 89 QRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTP-VRWLTSTTAHAPAQ--------------------DADG 147 (398)
T ss_pred cCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCC-CEEEcCCeeeeeee--------------------cCCe
Confidence 54333334444444444556899999999999999999987 89999999999976 5577
Q ss_pred eEEEeCCC---cEEEeeEEEeecCC-CChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCC
Q 013000 161 AKLDLSDG---TSLYAKLVVGADGG-KSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDN 235 (451)
Q Consensus 161 v~v~~~dg---~~~~adlvVgADG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~ 235 (451)
+++++.+| +++++|+||||||. +|.+|+.++.......+.+.++.+.++.+.++ ...++.+.+.|++.++|+.++
T Consensus 148 v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~G~~~~lp~~~~ 227 (398)
T PRK06996 148 VTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAPRPGWAWERFTHEGPLALLPLGGP 227 (398)
T ss_pred EEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCCCCCEEEEEecCCCCeEEeECCCC
Confidence 88988865 58999999999997 58889999888888888899999988876544 456677889999999999865
Q ss_pred c---eEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecC
Q 013000 236 F---SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 312 (451)
Q Consensus 236 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
. .+++|..+++........+.+.+.+.+.+.+.. + ++. + ....
T Consensus 228 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-------------------------------~~~-~-~~~~ 273 (398)
T PRK06996 228 RQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGT-R-------------------------------MGR-F-TRIA 273 (398)
T ss_pred CCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhcc-c-------------------------------cCc-e-EEec
Confidence 4 677888776555444556777888888775541 1 000 1 1112
Q ss_pred cceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhH
Q 013000 313 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 392 (451)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~ 392 (451)
....|++....+++|..|||+|+|||||.++|+.|||+|+||+||..|+++|... + . ...+|+.|+++|++++.
T Consensus 274 ~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~---~-~--~~~~L~~Y~~~R~~~~~ 347 (398)
T PRK06996 274 GRHAFPLGLNAARTLVNGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH---G-A--TPLALATFAARRALDRR 347 (398)
T ss_pred ceEEEeeecccccceecCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc---C-C--cHHHHHHHHHHHHHHHH
Confidence 2234777777788999999999999999999999999999999999999999652 2 2 26789999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhh
Q 013000 393 VMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYAS 438 (451)
Q Consensus 393 ~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~ 438 (451)
.++..++.+.++++..+++...+|+..+.++..+|.+++.+++.++
T Consensus 348 ~~~~~s~~l~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 348 VTIGATDLLPRLFTVDSRPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999998
No 17
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.3e-44 Score=357.61 Aligned_cols=376 Identities=28% Similarity=0.476 Sum_probs=290.9
Q ss_pred CcHHHHHHHhcCCCCCC---CcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEE
Q 013000 1 MVGMALACSLASMPLTK---HLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKM 77 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~---g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 77 (451)
||||++|+.|++ + |++|+||||.......+ ....++++.++++++++|+++|+++++.+.+. +...+
T Consensus 13 ~aGl~~A~~L~~----~~~~G~~v~v~E~~~~~~~~~-----~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~-~~~~~ 82 (395)
T PRK05732 13 MAGATLALALSR----LSHGGLPVALIEAFAPESDAH-----PGFDARAIALAAGTCQQLARLGVWQALADCAT-PITHI 82 (395)
T ss_pred HHHHHHHHHhhh----cccCCCEEEEEeCCCcccccC-----CCCCccceeccHHHHHHHHHCCChhhhHhhcC-CccEE
Confidence 689999999998 5 99999999964221110 12245699999999999999999999988665 45555
Q ss_pred EEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC
Q 013000 78 QVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK 157 (451)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
.+++........+.......+..++.++|..|.+.|.+.+.+.++++++++++|++++. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~--------------------~ 142 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER--------------------T 142 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE--------------------c
Confidence 55543333323333222233345688999999999999998766699999999999975 4
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCc
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF 236 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~ 236 (451)
++.+.|++.+|..+.+|+||+|||.+|.||+.++.......+...++...+...... ...+..+.++++++++|.+++.
T Consensus 143 ~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~g~ 222 (395)
T PRK05732 143 QGSVRVTLDDGETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAHQGRAFERFTEHGPLALLPMSDGR 222 (395)
T ss_pred CCeEEEEECCCCEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCCCCEEEEeecCCCCEEEeECCCCC
Confidence 566889999998899999999999999999999887766666667766666554332 4445566788899999999999
Q ss_pred eEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCccee
Q 013000 237 SNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 316 (451)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (451)
..++|+.+.+........+.+.+.+.+...+. |... .+. .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------------------~~~-~~~~~~~ 268 (395)
T PRK05732 223 CSLVWCHPLEDAEEVLSWSDAQFLAELQQAFG--WRLG-------------------------------RIT-HAGKRSA 268 (395)
T ss_pred eEEEEECCHHHHHHHHcCCHHHHHHHHHHHHH--hhhc-------------------------------cee-ecCCcce
Confidence 88899887654444444566667666666432 1000 000 0111224
Q ss_pred eecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHH
Q 013000 317 FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 396 (451)
Q Consensus 317 ~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~ 396 (451)
|++.....++|..|||+|+|||||.++|++|||+|+||+||..|+++|...++...+...+.+|+.|+++|++++..++.
T Consensus 269 ~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~ 348 (395)
T PRK05732 269 YPLALVTAAQQISHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIG 348 (395)
T ss_pred ecccccchhhhccCcEEEEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666667889999999999999999999999999999999999999988765443333468999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 397 VLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 397 ~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
.++.+.+++..++++...+|+..+.++..+|.+++++++..+|.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 392 (395)
T PRK05732 349 FTDGLVRLFANRWAPLVVGRNLGLMAMDLLPPARDWLARRTLGW 392 (395)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHccCHHHHHHHHHHHhcc
Confidence 99999999999889999999999999999999999999999985
No 18
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=351.91 Aligned_cols=373 Identities=29% Similarity=0.471 Sum_probs=289.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ .|++|+|+||.+.+...++ ....+++.++++++++|+++|+++++......+...+.++
T Consensus 15 ~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~~~-----~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 15 LVGASLALALAQ----SGLRVALLAPRAPPRPADD-----AWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCCCccccCC-----CCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 689999999999 4999999999998754433 2346779999999999999999999865554456677776
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
.... ....+.......+...+.++|..|+++|.+.+++.++++++ +++|++++. .++.
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~--------------------~~~~ 143 (388)
T PRK07608 86 GDAH-ARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEV--------------------DPDA 143 (388)
T ss_pred ECCC-ceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEe--------------------cCCe
Confidence 5442 33333322222334567899999999999999988768888 999999875 4456
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCceEE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNFSNI 239 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~ 239 (451)
+.|++.+|.+++||+||+|||++|.||+.++.......+...++.+.++.+..+ ...+..+.++++++++|++++...+
T Consensus 144 ~~v~~~~g~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 223 (388)
T PRK07608 144 ATLTLADGQVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERPHRGTAYQWFRDDGILALLPLPDGHVSM 223 (388)
T ss_pred EEEEECCCCEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCCCCCEEEEEecCCCCEEEeECCCCCeEE
Confidence 889999998999999999999999999999887665566566666666655443 3455666788899999999998888
Q ss_pred EEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeec
Q 013000 240 VWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPL 319 (451)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (451)
+|..+..........+++++.+.+........ .. .........||+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~-~~~~~~~~~~~~ 269 (388)
T PRK07608 224 VWSARTAHADELLALSPEALAARVERASGGRL---------------------------------GR-LECVTPAAGFPL 269 (388)
T ss_pred EEECCHHHHHHHHCCCHHHHHHHHHHHHHHhc---------------------------------CC-ceecCCcceeec
Confidence 78765443333334466667666655332000 00 111112223677
Q ss_pred ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHH
Q 013000 320 SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLD 399 (451)
Q Consensus 320 ~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~ 399 (451)
....++.|..+||+|||||||.|+|++|||+|+||+||..|+++|......+ +.....+|+.|+++|++++..++..++
T Consensus 270 ~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da~~La~~L~~~~~~~-~~~~~~~l~~Ye~~R~~~~~~~~~~~~ 348 (388)
T PRK07608 270 RLQRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDVAALADVLAGREPFR-DLGDLRLLRRYERARREDILALQVATD 348 (388)
T ss_pred chhhhhhhhcCceEEEeccccccCCccccccchhHHHHHHHHHHHHHhhccC-CCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7667889999999999999999999999999999999999999998764221 223358999999999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhC
Q 013000 400 GFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASG 439 (451)
Q Consensus 400 ~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g 439 (451)
.+..++...+++...+|+..+..+...|.+++.++++.+|
T Consensus 349 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T PRK07608 349 GLQRLFALPGPLARWLRNAGMALVGALPLVKRWLVRHALG 388 (388)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhhChHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999876
No 19
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=3.7e-43 Score=360.67 Aligned_cols=366 Identities=22% Similarity=0.335 Sum_probs=279.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+ ...++++.++++++++|+++|+.+++.+.+. +...+.++
T Consensus 20 p~Gl~lA~~L~~----~G~~v~v~Er~~~~----------~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~ 84 (538)
T PRK06183 20 PVGLTLANLLGQ----YGVRVLVLERWPTL----------YDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFL 84 (538)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCC----------CCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEE
Confidence 789999999999 49999999999877 4456799999999999999999999988765 45667777
Q ss_pred eCCCcceeEeecCCCC--CccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+.++.....++..... ..+..+.++|..|+++|.+.+.+.++++|+++++|+++++ ++
T Consensus 85 ~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~--------------------~~ 144 (538)
T PRK06183 85 DAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ--------------------DD 144 (538)
T ss_pred cCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE--------------------cC
Confidence 7666555555421111 1122367899999999999998875699999999999987 44
Q ss_pred CeeEEEeC--CC--cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC--C-CeeEEEecCCCcEEEee
Q 013000 159 HLAKLDLS--DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--N-YCAWQRFLPAGPIALLP 231 (451)
Q Consensus 159 ~~v~v~~~--dg--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~g~~~~~p 231 (451)
++++|++. +| +++++|+||||||++|.||+++++......+...++.+.+..... . ...+..+.+++++.++|
T Consensus 145 ~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 224 (538)
T PRK06183 145 DGVTVTLTDADGQRETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDPLGGPHTYQYCDPARPYTSVR 224 (538)
T ss_pred CeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCccCCCceEEEECCCCCEEEEE
Confidence 66888876 56 379999999999999999999998777666666666555433211 1 34456677889999999
Q ss_pred cCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeec
Q 013000 232 IGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA 311 (451)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (451)
++++...+.+...+.+... .....+.+.+.+.. |...+ . ..++
T Consensus 225 ~~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~l~~-----~~~~~-----------------------------~-~~~~- 267 (538)
T PRK06183 225 LPHGRRRWEFMLLPGETEE-QLASPENVWRLLAP-----WGPTP-----------------------------D-DAEL- 267 (538)
T ss_pred cCCCeEEEEEEeCCCCChh-hcCCHHHHHHHHHh-----hCCCC-----------------------------c-ceEE-
Confidence 9888776666554332211 11133333333322 11000 0 0011
Q ss_pred CcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhh
Q 013000 312 SERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 391 (451)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~ 391 (451)
.....|.++.+.+++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|...++.. ..+.+|+.|+++|++++
T Consensus 268 ~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~---~~~~~L~~Ye~eR~p~~ 344 (538)
T PRK06183 268 IRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGR---AGDALLDTYEQERRPHA 344 (538)
T ss_pred EEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHH
Confidence 112236666677899999999999999999999999999999999999999998776432 24789999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 392 IVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 392 ~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
..++..+..+..+++..++....+|++.+..+...|.+++.++...+++.
T Consensus 345 ~~~~~~s~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~ 394 (538)
T PRK06183 345 RAMIDLAVRLGRVICPTDRLAAALRDAVLRALNYLPPLKRYVLEMRFKPM 394 (538)
T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHHHHHHhhhcCcchhhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999998776643
No 20
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=352.16 Aligned_cols=368 Identities=18% Similarity=0.225 Sum_probs=285.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++ +|++|+|||+++.+ ....++..+++.++++|+++|+++++.+....+...+.++
T Consensus 16 ~~Gl~~A~~La~----~G~~v~liE~~~~~----------~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 16 PAGMMLGLLLAR----AGVDVTVLEKHADF----------LRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCcc----------CccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 689999999999 49999999999754 2234688999999999999999999877555456777777
Q ss_pred eCCCc-ceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 81 DYTGL-GYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
+..+. ....+..... ...+++.++|..|.+.|.+.+.+.++++++++++|++++. .++
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--------------------~~~ 140 (407)
T PRK06185 82 IGGRTVTLADFSRLPT-PYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--------------------EGG 140 (407)
T ss_pred ECCeEEEecchhhcCC-CCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--------------------eCC
Confidence 54432 2223332221 2345678999999999999998776699999999999976 222
Q ss_pred e---eEEEeCCCc-EEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCC
Q 013000 160 L---AKLDLSDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 160 ~---v~v~~~dg~-~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~ 234 (451)
. +.+...+|+ ++++|+||+|||.+|.||+.+++......+.....++.++..... ...++.+.++++++++|.+
T Consensus 141 ~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~llP~~- 219 (407)
T PRK06185 141 RVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFRLPREPDDPESLMGRFGPGQGLIMIDRG- 219 (407)
T ss_pred EEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEecCCCCCCCcccceEecCCcEEEEEcCC-
Confidence 2 345556775 799999999999999999999988776666666555544433222 2456778899999999997
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+...++|..+..........+.+.+.+.+...++ .. .+.+.. .......
T Consensus 220 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~-----------~~~l~~-------------------~~~~~~~ 268 (407)
T PRK06185 220 DYWQCGYVIPKGGYAALRAAGLEAFRERVAELAP-EL-----------ADRVAE-------------------LKSWDDV 268 (407)
T ss_pred CeEEEEEEecCCCchhhhhhhHHHHHHHHHHhCc-cH-----------HHHHhh-------------------cCCcccc
Confidence 7788999987766554445566677777665432 00 000000 1112233
Q ss_pred eeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHH
Q 013000 315 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 394 (451)
Q Consensus 315 ~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~ 394 (451)
..||+....+++|..+|++|+|||||.++|++|||+|+||+||..|++.|..+++.+ +. ...+|+.|+++|+++...+
T Consensus 269 ~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~-~~-~~~~L~~Y~~~R~~~~~~~ 346 (407)
T PRK06185 269 KLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRG-RV-SDRDLAAVQRRREFPTRVT 346 (407)
T ss_pred EEEEEeccccccccCCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccC-Cc-cHHHHHHHHHHhhhHHHHH
Confidence 457777778899999999999999999999999999999999999999999887654 33 3589999999999999999
Q ss_pred HHHHHHHHHhhcCCC--chHHHHHHHHHHhhccChhHHHHHHHHh
Q 013000 395 MAVLDGFQKAYSVDF--GPLNILRAAAFHGAQYISPLKRNIISYA 437 (451)
Q Consensus 395 ~~~s~~~~~~~~~~~--~~~~~~r~~~~~~~~~~p~l~~~~~~~~ 437 (451)
+..++.+.++|..+. ++...+|+..+.+++..|++++.+++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~R~~~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 347 QALQRRIQRRLLAPALAGRGPLGPPLLLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHHHHHHHHhhccccccCccccCCchHHHHHHhChhHHHhhHHhe
Confidence 999999999999888 8999999999999999999999998885
No 21
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-43 Score=346.40 Aligned_cols=370 Identities=16% Similarity=0.173 Sum_probs=267.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+..+ ..++++.++++++++|+++|+++++.+.+. +...+.++
T Consensus 10 ~aGl~~A~~L~~----~G~~v~v~E~~~~~~----------~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~ 74 (391)
T PRK07588 10 IAGPTLAYWLRR----YGHEPTLIERAPELR----------TGGYMVDFWGVGYEVAKRMGITDQLREAGY-QIEHVRSV 74 (391)
T ss_pred HHHHHHHHHHHH----CCCceEEEeCCCCcc----------CCCeEEeccCcHHHHHHHcCCHHHHHhccC-CccceEEE
Confidence 689999999999 599999999998763 334589999999999999999999988665 66778888
Q ss_pred eCCCcceeEeecCCCCC--ccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDVNK--EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~--~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+.++.....++...... ....+.++|.+|.+.|++.+.. +++|+++++|++++. .+
T Consensus 75 ~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~--~v~i~~~~~v~~i~~--------------------~~ 132 (391)
T PRK07588 75 DPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDG--QVETIFDDSIATIDE--------------------HR 132 (391)
T ss_pred cCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhc--CeEEEeCCEEeEEEE--------------------CC
Confidence 76665544444222111 1123689999999999997753 489999999999976 45
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCC-C-cccCeEEEEEEeecCC-CCeeEEEec-CCCcEEEeecCC
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG-W-SYSQNAIICTVEHNKE-NYCAWQRFL-PAGPIALLPIGD 234 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~g~~~~~p~~~ 234 (451)
+.+.|+++||+++++|+||||||++|.||+.+...... . ..+.......+....+ ....+..+. +++++..+|+.+
T Consensus 133 ~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~ 212 (391)
T PRK07588 133 DGVRVTFERGTPRDFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVALRG 212 (391)
T ss_pred CeEEEEECCCCEEEeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCCCCCCceEEEEeCCCCEEEEEecCC
Confidence 67899999999999999999999999999987432221 1 1122222222221122 233344444 566899999988
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+...++|....... ....+.+...+.+.+.+. +|.+. ...+++.+ ......
T Consensus 213 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-~~~~~-------~~~~~~~~-------------------~~~~~~ 263 (391)
T PRK07588 213 DRTLFLFIFRAEHD--NPPLTPAEEKQLLRDQFG-DVGWE-------TPDILAAL-------------------DDVEDL 263 (391)
T ss_pred CCeEEEEEEEcCCc--cccCCHHHHHHHHHHHhc-cCCcc-------HHHHHHhh-------------------hcccch
Confidence 87666666543321 122345566666666554 22211 00111110 000000
Q ss_pred eeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHH
Q 013000 315 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 394 (451)
Q Consensus 315 ~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~ 394 (451)
..+++....+++|..|||+|||||||.|+|+.|||+|+||+||..|++.|.... .+ .+.+|+.|++.|++++..+
T Consensus 264 ~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~~---~~--~~~al~~Y~~~R~~~~~~~ 338 (391)
T PRK07588 264 YFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVLAGELARAG---GD--HRRAFDAYEKRLRPFIAGK 338 (391)
T ss_pred heeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHHHHHHHhcc---CC--HHHHHHHHHHHHHHHHHHH
Confidence 011233345678999999999999999999999999999999999999997531 12 4789999999999999999
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCC
Q 013000 395 MAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQR 442 (451)
Q Consensus 395 ~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~ 442 (451)
+..++.+..+++..+++...+|+..+..+. .|.+++.+++.....+.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~ 385 (391)
T PRK07588 339 QAAAAKFLSVFAPKTRFGLYVRNIAMKIMN-LPPVADFVGAGSFRDDF 385 (391)
T ss_pred HhhcccccccccCCCHHHHHHHHHHHHHhc-cchhhhhhhhccccCCC
Confidence 999999999999999999999999999999 89999999887766554
No 22
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-42 Score=348.18 Aligned_cols=362 Identities=20% Similarity=0.243 Sum_probs=273.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+ ...++++.++++++++|+++|+++++.+.+. +.....++
T Consensus 12 paGl~lA~~L~~----~G~~v~viEr~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~ 76 (493)
T PRK08244 12 PVGLMLASELAL----AGVKTCVIERLKET----------VPYSKALTLHPRTLEILDMRGLLERFLEKGR-KLPSGHFA 76 (493)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCC----------CCCcceeEecHHHHHHHHhcCcHHHHHhhcc-cccceEEe
Confidence 789999999999 49999999999877 4557799999999999999999999988664 44445454
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
...+ ...+.... ....+.+.++|..|+++|.+.+++.+ ++++++++|++++. .++.
T Consensus 77 ~~~~--~~~~~~~~-~~~~~~~~i~q~~le~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~~~ 132 (493)
T PRK08244 77 GLDT--RLDFSALD-TSSNYTLFLPQAETEKVLEEHARSLG-VEIFRGAEVLAVRQ--------------------DGDG 132 (493)
T ss_pred cccc--cCCcccCC-CCCCcEEEecHHHHHHHHHHHHHHcC-CeEEeCCEEEEEEE--------------------cCCe
Confidence 3222 12222111 12334578999999999999998886 99999999999976 3455
Q ss_pred eEEEeC--CC-cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEecCCCcEEEeecCCCc
Q 013000 161 AKLDLS--DG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFLPAGPIALLPIGDNF 236 (451)
Q Consensus 161 v~v~~~--dg-~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~p~~~~~ 236 (451)
+++++. +| +++++|+||||||.+|.||+++++......+...++.+.+....+. ...+..+.++++++++|++++.
T Consensus 133 v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~P~~~~~ 212 (493)
T PRK08244 133 VEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPPPSSVLSLCTREGGVMIVPLSGGI 212 (493)
T ss_pred EEEEEEeCCccEEEEeCEEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCCCcceeEEEeCCceEEEEECCCCe
Confidence 666664 56 4799999999999999999999988776666667776666554333 3455567888999999999888
Q ss_pred eEEEEEcCccch-HHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcce
Q 013000 237 SNIVWTMNPKDA-SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERM 315 (451)
Q Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
.++++..+.... ......+.+++.+.+...+..... + .......
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------~-----~~~~~~~ 257 (493)
T PRK08244 213 YRVLIIDPERPQVPKDEPVTLEELKTSLIRICGTDFG------------------------------L-----NDPVWMS 257 (493)
T ss_pred EEEEEEcCCcccccCCCCCCHHHHHHHHHHhhCCCCC------------------------------c-----CCeeEEE
Confidence 777765543221 111234567777766653321000 0 0001122
Q ss_pred eeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013000 316 VFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395 (451)
Q Consensus 316 ~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 395 (451)
.|+++.+.+++|.+|||+|+|||||.++|++|||+|+||+||.+|+++|...++.. ..+.+|+.|+++|++++..++
T Consensus 258 ~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~---~~~~lL~~Ye~eR~~~~~~~~ 334 (493)
T PRK08244 258 RFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLAAAIKGW---APDWLLDSYHAERHPVGTALL 334 (493)
T ss_pred ecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHHHHHHHHHHHcCC---CCchhhhhhHHHHHHHHHHHH
Confidence 36666677889999999999999999999999999999999999999999987532 346899999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 396 AVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 396 ~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
..++....++... +....+|+.+..++ ..+.+++.+.+.++|+.
T Consensus 335 ~~~~~~~~~~~~~-~~~~~~R~~~~~~~-~~~~~~~~~~~~~~~~~ 378 (493)
T PRK08244 335 RNTEVQTKLFDFT-RPGLALRSMLSDLL-GFPEVNRYLAGQISALD 378 (493)
T ss_pred HHhHHHHHHhcCC-chhHHHHHHHHHHh-cchHHHHHHHHHHhcCC
Confidence 9998888888654 77788888766555 46888888888887775
No 23
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=342.86 Aligned_cols=357 Identities=23% Similarity=0.266 Sum_probs=272.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+. ....++..++++++++|+++|+++++.+.+. ......+
T Consensus 13 p~Gl~lA~~La~----~G~~v~vlEr~~~~~---------~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~-~~~~~~~- 77 (488)
T PRK06834 13 PTGLMLAGELAL----AGVDVAIVERRPNQE---------LVGSRAGGLHARTLEVLDQRGIADRFLAQGQ-VAQVTGF- 77 (488)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCCC---------CCCcceeeECHHHHHHHHHcCcHHHHHhcCC-cccccee-
Confidence 689999999999 499999999998751 1345688999999999999999999987543 2211111
Q ss_pred eCCCcceeEeecCCC-CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 81 DYTGLGYTKYNARDV-NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
. ...++.... ...++++.+.+..|+++|.+.+++.+ ++|+++++|++++. +++
T Consensus 78 ~-----~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~v~~--------------------~~~ 131 (488)
T PRK06834 78 A-----ATRLDISDFPTRHNYGLALWQNHIERILAEWVGELG-VPIYRGREVTGFAQ--------------------DDT 131 (488)
T ss_pred e-----eEecccccCCCCCCccccccHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------cCC
Confidence 1 111111111 12245678999999999999999886 99999999999976 446
Q ss_pred eeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCCCeeEEEecCCCcEEEeecC-CCceE
Q 013000 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG-DNFSN 238 (451)
Q Consensus 160 ~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~-~~~~~ 238 (451)
.+.|++.+|+++++|+||+|||.+|.||+++++......+...++.+.+..+.+.. ....+.+.+...+.|.. ++..+
T Consensus 132 ~v~v~~~~g~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~ 210 (488)
T PRK06834 132 GVDVELSDGRTLRAQYLVGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEPE-WGVHRDALGIHAFGRLEDEGPVR 210 (488)
T ss_pred eEEEEECCCCEEEeCEEEEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCCC-cceeeCCCceEEEeccCCCCeEE
Confidence 78888888889999999999999999999999998888887788877777654321 11233456777778876 56667
Q ss_pred EEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeee
Q 013000 239 IVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFP 318 (451)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (451)
++|..+... .....+.+++.+.+...+...++. ....+...|+
T Consensus 211 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~g~~~~~-----------------------------------~~~~~~~~~~ 253 (488)
T PRK06834 211 VMVTEKQVG--ATGEPTLDDLREALIAVYGTDYGI-----------------------------------HSPTWISRFT 253 (488)
T ss_pred EEEecCCCC--CCCCCCHHHHHHHHHHhhCCCCcc-----------------------------------ccceeEEecc
Confidence 777654332 112446677777777644311110 0011223477
Q ss_pred cccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHH
Q 013000 319 LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVL 398 (451)
Q Consensus 319 ~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s 398 (451)
.+.+.+++|..|||+|+|||||.++|+.|||+|++|+||.+|+|+|...++.. ..+.+|+.|+++|++.+..++..+
T Consensus 254 ~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawkLa~vl~g~---~~~~lLd~Ye~eRrp~~~~~~~~t 330 (488)
T PRK06834 254 DMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWKLAQVVKGT---SPESLLDTYHAERHPVAARVLRNT 330 (488)
T ss_pred ccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999999987643 347999999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 399 DGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 399 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
.....++. .++....+|+.++.++...|. ++.++..++|+.
T Consensus 331 ~~~~~~~~-~~~~~~~lR~~~~~~~~~~~~-~~~~~~~~~g~~ 371 (488)
T PRK06834 331 MAQVALLR-PDDRTEALRDIVAELLGMDEP-RKRIAAMMSGLD 371 (488)
T ss_pred HHHHHhhc-CChHHHHHHHHHHHHhcCcHH-HHHHHHHHhcCC
Confidence 88887776 678889999999998887655 888888888873
No 24
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=7.6e-41 Score=331.19 Aligned_cols=369 Identities=14% Similarity=0.076 Sum_probs=257.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|+||++.+. .....++..|+|+++++|+++|+++++.+.+. ....+.++
T Consensus 12 paGl~~A~~L~~----~G~~v~v~E~~~~~~--------~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~ 78 (392)
T PRK08243 12 PAGLLLGQLLHL----AGIDSVVLERRSREY--------VEGRIRAGVLEQGTVDLLREAGVGERMDREGL-VHDGIELR 78 (392)
T ss_pred HHHHHHHHHHHh----cCCCEEEEEcCCccc--------cccccceeEECHhHHHHHHHcCChHHHHhcCC-ccCcEEEE
Confidence 689999999999 599999999998641 11233466799999999999999999988765 56677776
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.... ..++............++|..|.+.|++.+.+.+ ++++++++|++++. .++..
T Consensus 79 ~~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~g-v~v~~~~~v~~i~~-------------------~~~~~ 136 (392)
T PRK08243 79 FDGRR--HRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAG-GPIRFEASDVALHD-------------------FDSDR 136 (392)
T ss_pred ECCEE--EEeccccccCCceEEEeCcHHHHHHHHHHHHhCC-CeEEEeeeEEEEEe-------------------cCCCc
Confidence 64322 2333222122233456789999999999988776 89999999999853 12345
Q ss_pred eEEEe-CCCc--EEEeeEEEeecCCCChhhhhhCCCCCCCcccC--eEEEEEE-eecCCCCeeEEEecCCCcEEEeecCC
Q 013000 161 AKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTV-EHNKENYCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 161 v~v~~-~dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~p~~~ 234 (451)
+.|++ .||+ ++++|+||||||++|.||++++.......... ..+.+.+ ..............+.++.++.+.++
T Consensus 137 ~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (392)
T PRK08243 137 PYVTYEKDGEEHRLDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPVSDELIYANHERGFALCSMRSP 216 (392)
T ss_pred eEEEEEcCCeEEEEEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCCCCceEEeeCCCceEEEecCCC
Confidence 66676 4774 68999999999999999999976432111111 1222222 11111122222223445555555555
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+...+++.++.... ......+.+.+.+...+....... ... ..+ ...
T Consensus 217 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~----------~~~-----------------~~~----~~~ 263 (392)
T PRK08243 217 TRSRYYLQCPLDDK--VEDWSDERFWDELRRRLPPEDAER----------LVT-----------------GPS----IEK 263 (392)
T ss_pred CcEEEEEEecCCCC--cccCChhHHHHHHHHhcCcccccc----------ccc-----------------Ccc----ccc
Confidence 55556665543321 122345556666666443100000 000 000 011
Q ss_pred eeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHH
Q 013000 315 MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVM 394 (451)
Q Consensus 315 ~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~ 394 (451)
..+++....+++|..|||+|||||||.++|++|||+|+||+||..|+++|...++.+ .+.+|+.|+++|++++..+
T Consensus 264 ~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~----~~~~L~~Ye~~r~~r~~~~ 339 (392)
T PRK08243 264 SIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVEFYREG----DTALLDAYSATALRRVWKA 339 (392)
T ss_pred cceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHH
Confidence 225666666788999999999999999999999999999999999999999876532 2789999999999999999
Q ss_pred HHHHHHHHHhhcC---CCchHHHHHHHHHHhhccChhHHHHHHHHhhCCC
Q 013000 395 MAVLDGFQKAYSV---DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQ 441 (451)
Q Consensus 395 ~~~s~~~~~~~~~---~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~ 441 (451)
+..++.+..+++. ...+...+|+..|..+..+|..++.++..++|+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK08243 340 ERFSWWMTSMLHRFPDDDPFDQRIQLAELDYLTSSRAAATTLAENYVGLP 389 (392)
T ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence 9999999999876 3557888999999999999999999999999983
No 25
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=334.34 Aligned_cols=344 Identities=18% Similarity=0.227 Sum_probs=252.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+|+||++.++..+ +|+.|+++++++|+.+|+++.+...+. +...+.++
T Consensus 10 ~aGl~~A~~L~~----~g~~v~v~E~~~~~~~~g----------~gi~l~~~~~~~L~~~gl~~~~~~~~~-~~~~~~~~ 74 (373)
T PRK06753 10 IGGLTAAALLQE----QGHEVKVFEKNESVKEVG----------AGIGIGDNVIKKLGNHDLAKGIKNAGQ-ILSTMNLL 74 (373)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCcccccc----------cceeeChHHHHHHHhcChHHHHHhcCC-cccceeEE
Confidence 689999999999 599999999999885444 499999999999999999999877655 66778888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.++.....++. .....++.++|..|+++|.+.+. ..+|+++++|++++. .++.
T Consensus 75 ~~~g~~~~~~~~---~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~--------------------~~~~ 128 (373)
T PRK06753 75 DDKGTLLNKVKL---KSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIEN--------------------ETDK 128 (373)
T ss_pred cCCCCEEeeccc---ccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEe--------------------cCCc
Confidence 776653333221 22345678999999999999986 258999999999976 4567
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC-C-CCeeEEEecCCCcEEEeecCCCceE
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-E-NYCAWQRFLPAGPIALLPIGDNFSN 238 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~p~~~~~~~ 238 (451)
+.|++.||+++.+|+||||||.+|.||+.+++.......+..++.+.++... + .......+..+++++++|..++...
T Consensus 129 v~v~~~~g~~~~~~~vigadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 208 (373)
T PRK06753 129 VTIHFADGESEAFDLCIGADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYWGTKGRFGIVPLLNNQAY 208 (373)
T ss_pred EEEEECCCCEEecCEEEECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEEcCCCEEEEEEcCCCeEE
Confidence 8999999999999999999999999999998765444445555555444322 1 1334455678889999999988766
Q ss_pred EEEEcCccchH-HhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 239 IVWTMNPKDAS-DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 239 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
+++.+...... .....+.+ .+.+.+. +|.+. ..++++.. + . .....+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~-~~~~~-------~~~~~~~~----~----------~------~~~~~~ 256 (373)
T PRK06753 209 WFITINAKERDPKYSSFGKP----HLQAYFN-HYPNE-------VREILDKQ----S----------E------TGILHH 256 (373)
T ss_pred EEEEeccccCCcccccccHH----HHHHHHh-cCChH-------HHHHHHhC----C----------c------ccceee
Confidence 66655432211 11112222 2333332 23221 01111110 0 0 000011
Q ss_pred ecc-cccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHH
Q 013000 318 PLS-LKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 396 (451)
Q Consensus 318 ~~~-~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~ 396 (451)
+.. ....++|..|||+|||||||+|+|+.|||+|+||+||..|+++|... ..+.+|+.|++.|++++..++.
T Consensus 257 ~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~~~-------~~~~al~~Y~~~r~~~~~~~~~ 329 (373)
T PRK06753 257 DIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAY-------DFEKALQRYDKIRVKHTAKVIK 329 (373)
T ss_pred ccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhhhc-------cHHHHHHHHHHHhhHHHHHHHH
Confidence 111 12357899999999999999999999999999999999999999532 2478999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 013000 397 VLDGFQKAYSVDFGPLNILRAAAFHGAQ 424 (451)
Q Consensus 397 ~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 424 (451)
.++.+..+++..++....+|+.++..+.
T Consensus 330 ~s~~~~~~~~~~~~~~~~~r~~~l~~~~ 357 (373)
T PRK06753 330 RSRKIGKIAQIESKLLVALRNRVMKRMP 357 (373)
T ss_pred HHHHHhHHHhcCCchHHHHHHHHHHhCC
Confidence 9999999999988889999999998873
No 26
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=4e-41 Score=333.12 Aligned_cols=358 Identities=20% Similarity=0.307 Sum_probs=250.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+|+||.+.++. .+++..|+|+++++|+++|+++.+...+......+.++
T Consensus 15 paGl~~A~~L~~----~G~~v~v~E~~~~~~~----------~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 15 IAGVALAHLLGA----RGHSVTVVERAARNRA----------QNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred HHHHHHHHHHHh----cCCcEEEEeCCCcccC----------CCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 789999999999 5999999999998733 23467899999999999999999987654334455554
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
. ++.....++........+.+.++|.+|+++|.+.+.+.++++++++++|++++. ++ ++..
T Consensus 81 ~-~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~-----------~~-------~~~~ 141 (388)
T PRK07045 81 H-DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIER-----------DA-------DGTV 141 (388)
T ss_pred c-CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE-----------CC-------CCcE
Confidence 3 233333333221111122356899999999999997766699999999999976 11 1124
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhh-CCCCCCCcccCeEEEEEEeecCCC-CeeEEEec-CCCcEEEeecCCCce
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELA-GFKTTGWSYSQNAIICTVEHNKEN-YCAWQRFL-PAGPIALLPIGDNFS 237 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~~~~~p~~~~~~ 237 (451)
+.|++.+|+++.+|+||||||++|.||+.+ +.......+....+.+.+...... ......+. ++++++++|+.++..
T Consensus 142 ~~v~~~~g~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 221 (388)
T PRK07045 142 TSVTLSDGERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAFGTIALTDSVRECNRLYVDSNQGLAYFYPIGDQAT 221 (388)
T ss_pred EEEEeCCCCEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeEEEEeccCCccccceEEEcCCCceEEEEEcCCCcE
Confidence 578899999999999999999999999975 544433344444444544433222 22222233 356678899988887
Q ss_pred EEEEEcCccchHHhh-cCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCccee
Q 013000 238 NIVWTMNPKDASDCK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMV 316 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (451)
+++|..+.+...... ....+++.+.+...+. +. ..+.+.. .........
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~-------------------~~~~~~~~~ 271 (388)
T PRK07045 222 RLVVSFPADEMQGYLADTTRTKLLARLNEFVG----DE-------SADAMAA-------------------IGAGTAFPL 271 (388)
T ss_pred EEEEEeccccchhccCCCCHHHHHHHHhhhcC----cc-------chHHHhc-------------------cCcccccce
Confidence 788877654332211 1234444444443211 10 0001100 000011112
Q ss_pred eecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHH
Q 013000 317 FPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 396 (451)
Q Consensus 317 ~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~ 396 (451)
+++....+++|..|||+|+|||||.|+|++|||+|+||+||..|+++|...+... ...+.+|+.|+++|+++...++.
T Consensus 272 ~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~--~~~~~~L~~Ye~~R~~~~~~~~~ 349 (388)
T PRK07045 272 IPLGRMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQ--IALADALERFERIRRPVNEAVIS 349 (388)
T ss_pred eecCccccccccCCCEEEEEccccccCCCccccHHHHHHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHhhhHHHHHHh
Confidence 3555566788999999999999999999999999999999999999998865432 23478999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHhh
Q 013000 397 VLDGFQKAYSVDFGPLNILRAAAFHGA 423 (451)
Q Consensus 397 ~s~~~~~~~~~~~~~~~~~r~~~~~~~ 423 (451)
.++.+.+.++...+.....|.+....-
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
T PRK07045 350 YGHALATTYHDRAALVANFRSQLQTSG 376 (388)
T ss_pred hhHHHhhhcccchhHHHHHHhhhhccc
Confidence 999999999988888888887766543
No 27
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.7e-40 Score=329.67 Aligned_cols=346 Identities=16% Similarity=0.178 Sum_probs=237.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|++|++ +|++|+|+||.+.++. .++|+.|+++++++|+++|+++++...+. ....+.++
T Consensus 12 iaGl~~A~~L~~----~G~~V~i~E~~~~~~~----------~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~-~~~~~~~~ 76 (400)
T PRK06475 12 VAGLSAALELAA----RGWAVTIIEKAQELSE----------VGAGLQLAPNAMRHLERLGVADRLSGTGV-TPKALYLM 76 (400)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCccCc----------CCccceeChhHHHHHHHCCChHHHhhccc-CcceEEEe
Confidence 689999999999 5999999999987743 44599999999999999999999988665 33455555
Q ss_pred eCCCcce-eEeecCCC---CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccc
Q 013000 81 DYTGLGY-TKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT 156 (451)
Q Consensus 81 ~~~~~~~-~~~~~~~~---~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
++..... ........ ......+.++|.+|.++|++.+.+.++++++++++|++++.
T Consensus 77 ~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~-------------------- 136 (400)
T PRK06475 77 DGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQ-------------------- 136 (400)
T ss_pred cCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEec--------------------
Confidence 5332211 11111110 11112246899999999999998765699999999999975
Q ss_pred CCCeeEEEeC---CCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC----------CCeeEEEecC
Q 013000 157 KGHLAKLDLS---DGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE----------NYCAWQRFLP 223 (451)
Q Consensus 157 ~~~~v~v~~~---dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 223 (451)
.++.++|++. +++++.+|+||||||++|.||++++.. .....+..++.+.+..+.. .......+++
T Consensus 137 ~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 215 (400)
T PRK06475 137 TGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAKAGFS-KARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGN 215 (400)
T ss_pred CCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhhcCCC-CCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcC
Confidence 3456777763 345899999999999999999999653 2222355666666554321 1223444578
Q ss_pred CCcEEEeecCCCceEEEEEcCccc-hHH-hh-cCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccc
Q 013000 224 AGPIALLPIGDNFSNIVWTMNPKD-ASD-CK-SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC 300 (451)
Q Consensus 224 ~g~~~~~p~~~~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (451)
++++.++|+.++....++...... ... +. ....+ .+...+. +|.+.. .++
T Consensus 216 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~-~~~~~~-------~~~--------------- 268 (400)
T PRK06475 216 KAHFIAYPVKGGKFFNFVAITGGENPGEVWSKTGDKA----HLKSIYA-DWNKPV-------LQI--------------- 268 (400)
T ss_pred CCEEEEEEccCCcEEEEEEEEcCCCCcccCCCCCCHH----HHHHHhc-CCChHH-------HHH---------------
Confidence 899999999877543333222211 111 11 11222 2333232 443321 111
Q ss_pred cCCCcceeeecCcceeeeccccccccc-ccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHH
Q 013000 301 FEVPPRVVKLASERMVFPLSLKHANNY-VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL 379 (451)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~ 379 (451)
++.......||+......+| ..|||+|||||||+|+|+.|||+|+||+||..|+++|... + ...+
T Consensus 269 -------i~~~~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~GqG~n~aieDa~~La~~L~~~-----~--~~~a 334 (400)
T PRK06475 269 -------LAAIDEWTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALDSD-----D--QSAG 334 (400)
T ss_pred -------HhcCCceeECcCcccCCCcceecCCEEEEecccccCCchhhhhHHHHHHHHHHHHHHHhcC-----C--HHHH
Confidence 11122233466666555554 5799999999999999999999999999999999999631 3 3789
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 013000 380 LKKYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ 424 (451)
Q Consensus 380 l~~Ye~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 424 (451)
|+.|++.|++++..++..++. ...+...+++....|+..+....
T Consensus 335 L~~Ye~~R~~r~~~~~~~s~~-~~~~~~~~~~~~~~r~~~~~~~~ 378 (400)
T PRK06475 335 LKRFDSVRKERIAAVAKRGQL-NRFAYHATGIFALGRNMLFAIRS 378 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHhhcC
Confidence 999999999999999999974 44444445667778988886653
No 28
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.1e-39 Score=335.83 Aligned_cols=358 Identities=20% Similarity=0.272 Sum_probs=260.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||++.+ ...++++.++++++++|+++|+.+++.+.+. ......++
T Consensus 33 paGl~lA~~L~~----~G~~v~viE~~~~~----------~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~-~~~~~~~~ 97 (547)
T PRK08132 33 PVGLALAIDLAQ----QGVPVVLLDDDDTL----------STGSRAICFAKRSLEIFDRLGCGERMVDKGV-SWNVGKVF 97 (547)
T ss_pred HHHHHHHHHHHh----CCCcEEEEeCCCCC----------CCCCeEEEEcHHHHHHHHHcCCcHHHHhhCc-eeeceeEE
Confidence 689999999999 49999999999876 4456799999999999999999999988765 33322333
Q ss_pred eCCCcceeEeecCCC--CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDV--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
..+ .....++.... ...+..+.++|..|+++|.+.+.+.++++++++++|++++. ++
T Consensus 98 ~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~--------------------~~ 156 (547)
T PRK08132 98 LRD-EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ--------------------HD 156 (547)
T ss_pred eCC-CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--------------------cC
Confidence 333 22333332111 11123456899999999999998876699999999999976 34
Q ss_pred CeeEEEe--CCCc-EEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-CeeEEEe----cCCCcEEEe
Q 013000 159 HLAKLDL--SDGT-SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-YCAWQRF----LPAGPIALL 230 (451)
Q Consensus 159 ~~v~v~~--~dg~-~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~g~~~~~ 230 (451)
+.+.+++ .+|. ++++|+||||||.+|.||+.+++......+...++...+..+.+. ...+..+ .++..+++.
T Consensus 157 ~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK08132 157 DGVTLTVETPDGPYTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKADFPTERWFWFDPPFHPGQSVLLH 236 (547)
T ss_pred CEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCCCCCeeeEEEeccCCCCcEEEEE
Confidence 5566555 3554 799999999999999999999988877666666666555544322 2222333 234456666
Q ss_pred ecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeee
Q 013000 231 PIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKL 310 (451)
Q Consensus 231 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (451)
|.+++...+.+......... .....+.+.+.+...+. .. .+ ..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~~----------------------------~~---~~- 279 (547)
T PRK08132 237 RQPDNVWRIDFQLGWDADPE-AEKKPENVIPRVRALLG----ED----------------------------VP---FE- 279 (547)
T ss_pred eCCCCeEEEEEecCCCCCch-hhcCHHHHHHHHHHHcC----CC----------------------------CC---ee-
Confidence 66666555444433221111 12345566666555332 00 00 00
Q ss_pred cCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchh
Q 013000 311 ASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 390 (451)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~ 390 (451)
......|.++.+.+++|..|||+|+|||||.|+|++|||+|+||+||.+|+++|...++.. ..+.+|+.|+++|+++
T Consensus 280 ~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~---~~~~lL~~Ye~eR~p~ 356 (547)
T PRK08132 280 LEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGR---APDSLLDSYASEREFA 356 (547)
T ss_pred EEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHH
Confidence 1112246777778899999999999999999999999999999999999999999887643 3488999999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHH
Q 013000 391 NIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNII 434 (451)
Q Consensus 391 ~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~ 434 (451)
+..++..+..+...++..++....+|+..+..+...+.+++.+.
T Consensus 357 ~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 400 (547)
T PRK08132 357 ADENIRNSTRSTDFITPKSPVSRLFRDAVLRLARDHPFARRLVN 400 (547)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHhhhcccHHHHHHHh
Confidence 99999999999999888888888999999999988888776664
No 29
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=3.2e-40 Score=323.55 Aligned_cols=349 Identities=16% Similarity=0.159 Sum_probs=241.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||++.++..| .++.+.++++++|+++|+++.+.+.+. ....+.++
T Consensus 11 ~aGl~~A~~L~~----~G~~v~viE~~~~~~~~g----------~~i~~~~~a~~~L~~lGl~~~~~~~~~-~~~~~~~~ 75 (372)
T PRK05868 11 VAGTAAAYWLGR----HGYSVTMVERHPGLRPGG----------QAIDVRGPALDVLERMGLLAAAQEHKT-RIRGASFV 75 (372)
T ss_pred HHHHHHHHHHHh----CCCCEEEEcCCCCCCCCc----------eeeeeCchHHHHHHhcCCHHHHHhhcc-CccceEEE
Confidence 689999999999 599999999999885444 489999999999999999999877654 56677777
Q ss_pred eCCCcceeEeecCC-C--CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC
Q 013000 81 DYTGLGYTKYNARD-V--NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK 157 (451)
Q Consensus 81 ~~~~~~~~~~~~~~-~--~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
+.++.......... . ......+.++|.+|.+.|.+.+. . +++++++++|++++. .
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~-~-~v~i~~~~~v~~i~~--------------------~ 133 (372)
T PRK05868 76 DRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQ-P-SVEYLFDDSISTLQD--------------------D 133 (372)
T ss_pred eCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhcc-C-CcEEEeCCEEEEEEe--------------------c
Confidence 76654333221110 1 11122467899999999887654 2 489999999999976 4
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCC--cccCeEEEEEEeecCCCCeeEE-EecCCCcEEEeecCC
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGW--SYSQNAIICTVEHNKENYCAWQ-RFLPAGPIALLPIGD 234 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~p~~~ 234 (451)
++.++|+++||+++++|+||||||++|.||+++....... .++.......++...+...... .++++..+.++|..+
T Consensus 134 ~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 213 (372)
T PRK05868 134 GDSVRVTFERAAAREFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFLELDYWQTWHYGDSTMAGVYSARN 213 (372)
T ss_pred CCeEEEEECCCCeEEeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCCCCCcceEEEecCCcEEEEEecCC
Confidence 5779999999999999999999999999999995433221 2333333333333222222222 235666778888876
Q ss_pred C-ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhcc-CCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecC
Q 013000 235 N-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 312 (451)
Q Consensus 235 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
+ ..+.++........ ......+...+.+...|.. +|... ++++.+ .. .
T Consensus 214 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~f~~~~w~~~---------~l~~~~-------------------~~-~ 263 (372)
T PRK05868 214 NTEARAALAFMDTELR-IDYRDTEAQFAELQRRMAEDGWVRA---------QLLHYM-------------------RS-A 263 (372)
T ss_pred CCceEEEEEEecCCcc-cccCChHHHHHHHHHHHhhCCCchH---------HHHhhc-------------------cc-C
Confidence 4 33333333221110 1112234455666665541 33311 011110 00 0
Q ss_pred cceeee-cccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhh
Q 013000 313 ERMVFP-LSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPAN 391 (451)
Q Consensus 313 ~~~~~~-~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~ 391 (451)
....|+ +....+++|++|||+|||||||+|+|+.|||+|+||+||..||+.|... ..+ .+.+|+.||+.++|+.
T Consensus 264 ~~~~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~AleDa~~La~~L~~~---~~~--~~~al~~ye~~~~~~~ 338 (372)
T PRK05868 264 PDFYFDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALLGAYILAGELKAA---GDD--YQLGFANYHAEFHGFV 338 (372)
T ss_pred CceeeccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHHHHHHHHHHHHhc---CCC--HHHHHHHHHHHHhHHH
Confidence 001122 3444568999999999999999999999999999999999999999663 123 4889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 013000 392 IVMMAVLDGFQKAYSVDFGPLNILRAAAFH 421 (451)
Q Consensus 392 ~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~ 421 (451)
.+.|.........+...+.+..++|+..+.
T Consensus 339 ~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~ 368 (372)
T PRK05868 339 ERNQWLVSDNIPGGAPIPQEEFERIVHSIT 368 (372)
T ss_pred HHhhhhhhccCCcccCCCHHHHHHhhcccc
Confidence 999999999999888888888888766553
No 30
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=1.5e-39 Score=336.78 Aligned_cols=341 Identities=19% Similarity=0.282 Sum_probs=246.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|+++ .|++|+||||++.+ ...+++++|+|+++++|+++|+++++.+.+. ....+.+|
T Consensus 42 PaGL~lA~~Lar~---~Gi~v~IiE~~~~~----------~~~grA~gl~prtleiL~~lGl~d~l~~~g~-~~~~~~~~ 107 (634)
T PRK08294 42 PAGLTLAAQLSAF---PDITTRIVERKPGR----------LELGQADGIACRTMEMFQAFGFAERILKEAY-WINETAFW 107 (634)
T ss_pred HHHHHHHHHHhcC---CCCcEEEEEcCCCC----------CCCCeeeEEChHHHHHHHhccchHHHHhhcc-cccceEEE
Confidence 7999999999993 29999999999877 4456699999999999999999999998776 55667777
Q ss_pred eCCCcce--e----Eeec-CCCCCccceeeechHHHHHHHHHHhhcCC-CceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 013000 81 DYTGLGY--T----KYNA-RDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSAT 152 (451)
Q Consensus 81 ~~~~~~~--~----~~~~-~~~~~~~~~~~i~R~~L~~~L~~~~~~~g-~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ 152 (451)
+.++... + .+.. .......+.+.++|..++++|++.+.+.+ .++++++++|++++.+ .+
T Consensus 108 ~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~---------~~---- 174 (634)
T PRK08294 108 KPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVD---------EE---- 174 (634)
T ss_pred cCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEEC---------CC----
Confidence 6543211 1 0110 01111222367999999999999998875 2688999999999761 10
Q ss_pred ccccCCCeeEEEeC------CC--cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC--CC-CeeE-EE
Q 013000 153 TLFTKGHLAKLDLS------DG--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAW-QR 220 (451)
Q Consensus 153 ~~~~~~~~v~v~~~------dg--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~-~~ 220 (451)
.+..|+|+++ +| ++++||+||||||++|.||+++++......+...+....+.... +. .... ..
T Consensus 175 ----~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~~p~~~~~~~~~ 250 (634)
T PRK08294 175 ----GEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTDFPDIRLKCAIQ 250 (634)
T ss_pred ----CCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccCCCCcceEEEEe
Confidence 2245777775 35 48999999999999999999999988877777666555554322 22 1111 12
Q ss_pred ecCCCcEEEeecCCCc-eEEEEEcCc---cchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccc
Q 013000 221 FLPAGPIALLPIGDNF-SNIVWTMNP---KDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLS 296 (451)
Q Consensus 221 ~~~~g~~~~~p~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (451)
..++|.+.++|+.++. .++++.... .........+.+++.+.+...+. .+...
T Consensus 251 ~~~~g~~~~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~-p~~~~---------------------- 307 (634)
T PRK08294 251 SASEGSILLIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILH-PYTLD---------------------- 307 (634)
T ss_pred cCCCceEEEEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcC-CCCCc----------------------
Confidence 2467899999998874 455444321 11112234577788887776442 11000
Q ss_pred cccccCCCcceeeecCcceeeeccccccccc----------ccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 297 AKECFEVPPRVVKLASERMVFPLSLKHANNY----------VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
.....+...|++.++.+++| ..|||+|+|||||.++|..|||+|++|+||.+|+|+|..
T Consensus 308 -----------~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~ 376 (634)
T PRK08294 308 -----------VKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAA 376 (634)
T ss_pred -----------eeEEeEEecccccceehhhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHH
Confidence 01122233466666666555 369999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013000 367 GIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 409 (451)
Q Consensus 367 ~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~~~ 409 (451)
.++.. ..+.+|+.|+++|+++++.+++.++.+..+|....
T Consensus 377 vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 377 VLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred HHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 87632 34899999999999999999999999999997653
No 31
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=9.4e-40 Score=333.17 Aligned_cols=329 Identities=23% Similarity=0.332 Sum_probs=240.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+ ...+++..|+++++++|+++|+.+++.+.+. ......+|
T Consensus 13 paGl~~A~~La~----~Gi~v~viE~~~~~----------~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~-~~~~~~~~ 77 (502)
T PRK06184 13 PTGLTLAIELAR----RGVSFRLIEKAPEP----------FPGSRGKGIQPRTQEVFDDLGVLDRVVAAGG-LYPPMRIY 77 (502)
T ss_pred HHHHHHHHHHHH----CCCcEEEEeCCCCC----------CcCccceeecHHHHHHHHHcCcHHHHHhcCc-cccceeEE
Confidence 799999999999 49999999999887 4456699999999999999999999988775 44455566
Q ss_pred eCCCcce-eEeecC-C---CCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccc
Q 013000 81 DYTGLGY-TKYNAR-D---VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLF 155 (451)
Q Consensus 81 ~~~~~~~-~~~~~~-~---~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (451)
..++... ..+... . ......++.++|..|+++|.+.+.+.+ ++|+++++|+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~g-v~i~~~~~v~~i~~------------------- 137 (502)
T PRK06184 78 RDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELG-HRVEFGCELVGFEQ------------------- 137 (502)
T ss_pred eCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCC-CEEEeCcEEEEEEE-------------------
Confidence 5443221 111110 0 011133578999999999999999886 89999999999976
Q ss_pred cCCCeeEEEe---CCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccC-eEEEEEEeecCCCCeeEEEec-CC-CcEEE
Q 013000 156 TKGHLAKLDL---SDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ-NAIICTVEHNKENYCAWQRFL-PA-GPIAL 229 (451)
Q Consensus 156 ~~~~~v~v~~---~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-g~~~~ 229 (451)
.++.+.+++ .+++++++|+||||||++|.||+++++......+.. .++.+.+.........+..|. +. +.+.+
T Consensus 138 -~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (502)
T PRK06184 138 -DADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTGLDRDAWHQWPDGDMGMIAL 216 (502)
T ss_pred -cCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeecCCCcceEEccCCCCcEEEE
Confidence 345677777 556789999999999999999999998887766655 555555554433333344443 33 67888
Q ss_pred eecCCC-ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCccee
Q 013000 230 LPIGDN-FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 308 (451)
Q Consensus 230 ~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (451)
+|+.++ ...+++..+... ....+.+.+.+.+...+. +.+ + ..
T Consensus 217 ~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~-----------------------------~---~~ 259 (502)
T PRK06184 217 CPLPGTDLFQIQAPLPPGG---EPDLSADGLTALLAERTG--RTD-----------------------------I---RL 259 (502)
T ss_pred EEccCCCeEEEEEEcCCCc---cCCCCHHHHHHHHHHhcC--CCC-----------------------------c---ce
Confidence 898765 344444443321 123455666666655322 000 0 00
Q ss_pred eecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhc
Q 013000 309 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 388 (451)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~ 388 (451)
........|+++.+.+++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|...++. ..+.+|+.|+++|+
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g----~~~~lL~~Ye~eR~ 335 (502)
T PRK06184 260 HSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAG----APEALLDTYEEERR 335 (502)
T ss_pred eeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHH
Confidence 11122334667777788999999999999999999999999999999999999999987764 23789999999999
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 013000 389 PANIVMMAVLDGFQKAYS 406 (451)
Q Consensus 389 ~~~~~~~~~s~~~~~~~~ 406 (451)
+++..++..++.+...+.
T Consensus 336 p~~~~~~~~s~~~~~~~~ 353 (502)
T PRK06184 336 PVAAAVLGLSTELLDAIK 353 (502)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999998887753
No 32
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-39 Score=319.60 Aligned_cols=353 Identities=19% Similarity=0.197 Sum_probs=251.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+|+||++.++.. +.|+.++++++++|+++|+.+.+.+.+. +...+.++
T Consensus 14 ~aGl~~A~~L~~----~g~~v~v~E~~~~~~~~----------g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~~~~~~~~ 78 (375)
T PRK06847 14 IGGLSAAIALRR----AGIAVDLVEIDPEWRVY----------GAGITLQGNALRALRELGVLDECLEAGF-GFDGVDLF 78 (375)
T ss_pred HHHHHHHHHHHh----CCCCEEEEecCCCCccC----------CceeeecHHHHHHHHHcCCHHHHHHhCC-CccceEEE
Confidence 689999999999 49999999999887443 4499999999999999999999988765 56677777
Q ss_pred eCCCcceeEeecCCCC--CccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDVN--KEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+.++.....++..... ..+....++|..|.+.|.+.+.+.+ ++|+++++|++++. .+
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~g-v~v~~~~~v~~i~~--------------------~~ 137 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAG-ADVRLGTTVTAIEQ--------------------DD 137 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhC-CEEEeCCEEEEEEE--------------------cC
Confidence 7666544443321111 1122357899999999999998876 89999999999976 44
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCC-CCCCcccCeEEEEEEeecCCCCeeEEEecCCCcEEEeecCCCce
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFK-TTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFS 237 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~ 237 (451)
..+.|.+.||+++.+|+||+|||.+|.+|+++... ......+...+...++.............+++.+.++|..++..
T Consensus 138 ~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 217 (375)
T PRK06847 138 DGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAEVDRSLMYLGPTTKAGVVPLSEDLM 217 (375)
T ss_pred CEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCCccceEEEeCCCcEEEEEcCCCCeE
Confidence 66889999999999999999999999999988433 33333444445445544332223344456677888999987765
Q ss_pred EEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceee
Q 013000 238 NIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVF 317 (451)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (451)
.+++..+.+.. .....+.+.+.+.+.+. .|.++. ...+.+.+ ........+
T Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~-------------------~~~~~~~~~ 268 (375)
T PRK06847 218 YLFVTEPRPDN---PRIEPDTLAALLRELLA-PFGGPV------LQELREQI-------------------TDDAQVVYR 268 (375)
T ss_pred EEEEeccCccc---ccCChHHHHHHHHHHHh-hcCchH------HHHHHHhc-------------------CCccceeec
Confidence 44444332211 12344555555555444 333210 00011000 000011123
Q ss_pred eccccc-ccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHH
Q 013000 318 PLSLKH-ANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMA 396 (451)
Q Consensus 318 ~~~~~~-~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~ 396 (451)
++.... ..+|..|||+|||||||+|+|+.|||+|+||+||..|++.|... ...+.+|+.|+++|++++..++.
T Consensus 269 ~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~------~~~~~al~~Y~~~R~~r~~~~~~ 342 (375)
T PRK06847 269 PLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARH------DSLEAALQAYYARRWERCRMVVE 342 (375)
T ss_pred cHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhC------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 45799999999999999999999999999999999999999752 13478999999999999999999
Q ss_pred HHHHHHHhhcCCCc---hHHHHHHHHHHhhc
Q 013000 397 VLDGFQKAYSVDFG---PLNILRAAAFHGAQ 424 (451)
Q Consensus 397 ~s~~~~~~~~~~~~---~~~~~r~~~~~~~~ 424 (451)
.++.+..++....+ ....+|++++.++.
T Consensus 343 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T PRK06847 343 ASARIGRIEIEGGDKAEHAGLMRESMELLAQ 373 (375)
T ss_pred HHHHhhheecCCCCccchHHHHHHHHHHhcC
Confidence 99999999876656 67788888887764
No 33
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=8.8e-40 Score=330.52 Aligned_cols=383 Identities=16% Similarity=0.146 Sum_probs=260.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++ +|++|+|+||++... ....|+.++|+++++|+++|+++.+......+..++.++
T Consensus 53 ~aGlalA~aLa~----~G~~V~vlEr~~~~~----------~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~ 118 (514)
T PLN02985 53 VGGSALAYALAK----DGRRVHVIERDLREP----------ERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVY 118 (514)
T ss_pred HHHHHHHHHHHH----cCCeEEEEECcCCCC----------ccccccccCchHHHHHHHcCCcchhhhccCcccccEEEE
Confidence 689999999999 599999999986542 233489999999999999999999887655466777777
Q ss_pred eCCCcceeEeecCC--CCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARD--VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
.........++... ......++.++|.+|.+.|.+.+.+.++++++.+ +++++.. +++
T Consensus 119 ~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~-------------------~~~ 178 (514)
T PLN02985 119 KDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIE-------------------EKG 178 (514)
T ss_pred ECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEE-------------------cCC
Confidence 64333334444221 1122456889999999999999988877999876 5777654 122
Q ss_pred C--eeEEEeCCCc--EEEeeEEEeecCCCChhhhhhCCCCCC-CcccCeEEEEEEeecCCCCeeEEEecCCCcEEEeecC
Q 013000 159 H--LAKLDLSDGT--SLYAKLVVGADGGKSRVRELAGFKTTG-WSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIG 233 (451)
Q Consensus 159 ~--~v~v~~~dg~--~~~adlvVgADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~ 233 (451)
. +|++...+|+ ++.||+||+|||.+|.+|++++..... ..+...++........+ ...+..+.+++++.++|++
T Consensus 179 ~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ypi~ 257 (514)
T PLN02985 179 VIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYISKNCRLEEP-EKLHLIMSKPSFTMLYQIS 257 (514)
T ss_pred EEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEEccccCCCC-CcceEEcCCCceEEEEEeC
Confidence 2 3444455775 467999999999999999999765432 11211121111111111 2234455778899999999
Q ss_pred CCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccc-ccCCcccccccccCCCcceeeecC
Q 013000 234 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSW-FRGDATLSAKECFEVPPRVVKLAS 312 (451)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
++...++|..+.+... .....++...+..... +. ..+.+.. +... +.+ ..
T Consensus 258 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----p~-------~p~~l~~~f~~~----------~~~-----~~ 308 (514)
T PLN02985 258 STDVRCVFEVLPDNIP---SIANGEMSTFVKNTIA----PQ-------VPPKLRKIFLKG----------IDE-----GA 308 (514)
T ss_pred CCeEEEEEEEeCCCCC---CcChhhHHHHHHhccc----cc-------cCHHHHHHHHhh----------ccc-----cc
Confidence 8888888777644221 1122333333332111 00 0011111 1000 000 00
Q ss_pred cceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhH
Q 013000 313 ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 392 (451)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~ 392 (451)
....+|........|..+|++|||||||+|+|++|||+|+||+||..|++.|.......+.....++|+.|+++|++++.
T Consensus 309 ~~~~~p~~~l~~~~~~~~~vvLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~ 388 (514)
T PLN02985 309 HIKVVPTKRMSATLSDKKGVIVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSA 388 (514)
T ss_pred ceeecCcccccccccCCCCEEEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchh
Confidence 01112222222344557899999999999999999999999999999999997642111122347899999999999999
Q ss_pred HHHHHHHHHHHhhc-CCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCCCCCCC
Q 013000 393 VMMAVLDGFQKAYS-VDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 447 (451)
Q Consensus 393 ~~~~~s~~~~~~~~-~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~~~~~~ 447 (451)
.++..|+.++.+|. .++...+.+|+..|..+..-+....--+..++|+...|+.|
T Consensus 389 ~i~~la~al~~~f~a~~~~~~~~l~~~~f~y~~~g~~~~~~~~~ll~~~~~~p~~l 444 (514)
T PLN02985 389 TVNTLGNAFSQVLVASTDEAKEAMRQGCYDYLCSGGFRTSGMMALLGGMNPRPLSL 444 (514)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCccccccHHHHcCCCCCcHHH
Confidence 99999999999996 45666899999999998888888888999999999888654
No 34
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=4.4e-39 Score=319.72 Aligned_cols=348 Identities=17% Similarity=0.245 Sum_probs=244.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.++..| +|+.|+|+++++|+++|+.+.+.+.+. ....+.++
T Consensus 14 iaGl~~A~~L~~----~g~~v~v~Er~~~~~~~g----------~gi~l~~~~~~~l~~lg~~~~~~~~~~-~~~~~~~~ 78 (396)
T PRK08163 14 IGGLAAALALAR----QGIKVKLLEQAAEIGEIG----------AGIQLGPNAFSALDALGVGEAARQRAV-FTDHLTMM 78 (396)
T ss_pred HHHHHHHHHHHh----CCCcEEEEeeCccccccc----------ceeeeCchHHHHHHHcCChHHHHhhcc-CCcceEEE
Confidence 689999999999 499999999999874444 499999999999999999999887665 45667777
Q ss_pred eC-CCcceeEeecCCC---CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccc
Q 013000 81 DY-TGLGYTKYNARDV---NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT 156 (451)
Q Consensus 81 ~~-~~~~~~~~~~~~~---~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+. ++.....++.... ......+.++|.+|.+.|.+.+.+.++++++++++|++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~-------------------- 138 (396)
T PRK08163 79 DAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ-------------------- 138 (396)
T ss_pred eCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec--------------------
Confidence 64 3333333322110 11122357999999999999998877799999999999975
Q ss_pred CCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-----CeeEEEecCCCcEEEee
Q 013000 157 KGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-----YCAWQRFLPAGPIALLP 231 (451)
Q Consensus 157 ~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~p 231 (451)
.++.+.|.+.+|+++.+|+||+|||.+|.+|+.+... .....+...+.+.++..... .......+++++++.+|
T Consensus 139 ~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p 217 (396)
T PRK08163 139 DGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYP 217 (396)
T ss_pred CCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEE
Confidence 4456889999999999999999999999999998433 22334455566666543211 11223345677888899
Q ss_pred cCCCc-eEEEEEcCccchHHh--hcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCccee
Q 013000 232 IGDNF-SNIVWTMNPKDASDC--KSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 308 (451)
Q Consensus 232 ~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (451)
+.++. .+++|.......... ...+.+. +.+.+. +|.+.. .++++
T Consensus 218 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~-~~~~~~-------~~~~~--------------------- 264 (396)
T PRK08163 218 LRGGEQYNLVVTFHSREQEEWGVKDGSKEE----VLSYFE-GIHPRP-------RQMLD--------------------- 264 (396)
T ss_pred ecCCeEEEEEEEECCCCCcccccCCCCHHH----HHHHHc-CCChHH-------HHHHh---------------------
Confidence 97764 455665543322111 1112222 333333 232210 00110
Q ss_pred eecCcceeeec-ccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhh
Q 013000 309 KLASERMVFPL-SLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAER 387 (451)
Q Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r 387 (451)
.......+.+ ...+.++|..|||+|+|||||+|+|+.|||+|+||+||..|+++|... .. ..+.+|+.|+++|
T Consensus 265 -~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~---~~--~~~~al~~y~~~R 338 (396)
T PRK08163 265 -KPTSWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGC---DG--DAEAAFALYESVR 338 (396)
T ss_pred -cCCceeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHHHHHHHHHHHHHhc---cc--cHHHHHHHHHHHH
Confidence 0001111211 122457899999999999999999999999999999999999999752 11 2488999999999
Q ss_pred chhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhc
Q 013000 388 KPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQ 424 (451)
Q Consensus 388 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~ 424 (451)
++++..++..++.+..+++.. .....+|+..+....
T Consensus 339 ~~r~~~~~~~s~~~~~~~~~~-~~~~~~r~~~~~~~~ 374 (396)
T PRK08163 339 IPRTARVVLSAREMGRIYHAK-GVERQVRNLLWKGRT 374 (396)
T ss_pred HHHHHHHHHHHHHhHHhhCCC-CHHHHHHHHHhhccC
Confidence 999999999999999998866 567888887776653
No 35
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=318.88 Aligned_cols=327 Identities=18% Similarity=0.174 Sum_probs=242.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+ ...+++..++++++++|+.+|+++++...+. +.....+|
T Consensus 15 PaGL~lA~~Lar----~Gi~V~llEr~~~~----------~~~gra~~l~~~tle~L~~lGl~~~l~~~~~-~~~~~~~~ 79 (487)
T PRK07190 15 PVGLMCAYLGQL----CGLNTVIVDKSDGP----------LEVGRADALNARTLQLLELVDLFDELYPLGK-PCNTSSVW 79 (487)
T ss_pred HHHHHHHHHHHH----cCCCEEEEeCCCcc----------cccccceEeCHHHHHHHHhcChHHHHHhhCc-cceeEEEe
Confidence 689999999999 49999999999987 3456799999999999999999999987664 44445555
Q ss_pred eCCCcceeEe---ecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC
Q 013000 81 DYTGLGYTKY---NARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK 157 (451)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
.......... .........+.+.+++..++++|.+.+.+.| ++++++++|+++++ .
T Consensus 80 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~G-v~v~~~~~v~~l~~--------------------~ 138 (487)
T PRK07190 80 ANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAG-AAVKRNTSVVNIEL--------------------N 138 (487)
T ss_pred cCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------c
Confidence 5332211111 0001011223467899999999999999886 99999999999987 4
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC--CC-CeeEEEecCCCcEEEeecCC
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK--EN-YCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~g~~~~~p~~~ 234 (451)
++++.+.+.+|++++|++||||||.+|.||+++++++........+....+..+. +. ........+.+.++++|.++
T Consensus 139 ~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~ 218 (487)
T PRK07190 139 QAGCLTTLSNGERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTDFPKVPEIIVFQAETSDVAWIPREG 218 (487)
T ss_pred CCeeEEEECCCcEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccCCCCCcceEEEEcCCCCEEEEECCC
Confidence 4567777888889999999999999999999999988766555444444443332 22 11212235678888999977
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
+...++.... ....+.+++.+.+...+. ++. + -.....+.
T Consensus 219 ~~~r~~~~~~------~~~~t~~~~~~~l~~~~~-~~~------------------------------~---~~~~~~w~ 258 (487)
T PRK07190 219 EIDRFYVRMD------TKDFTLEQAIAKINHAMQ-PHR------------------------------L---GFKEIVWF 258 (487)
T ss_pred CEEEEEEEcC------CCCCCHHHHHHHHHHhcC-CCC------------------------------C---ceEEEEEE
Confidence 6554433221 123456667676665332 000 0 01112334
Q ss_pred eeeecccccccccc-cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHH
Q 013000 315 MVFPLSLKHANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV 393 (451)
Q Consensus 315 ~~~~~~~~~~~~~~-~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~ 393 (451)
..|+++.+.+++|. .|||+|+|||||.++|++|||+|++|+||.+|+|+|...++.. ..+.+|+.|+++|++.+..
T Consensus 259 s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~---a~~~lLdtY~~eR~p~a~~ 335 (487)
T PRK07190 259 SQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHG---ASPELLQSYEAERKPVAQG 335 (487)
T ss_pred EEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHH
Confidence 45899999999997 7999999999999999999999999999999999999887643 3489999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 013000 394 MMAVLDGFQKAYS 406 (451)
Q Consensus 394 ~~~~s~~~~~~~~ 406 (451)
++..++.+.+...
T Consensus 336 vl~~t~~~~~~~~ 348 (487)
T PRK07190 336 VIETSGELVRSTK 348 (487)
T ss_pred HHHHHHHHHhhcc
Confidence 9999998887653
No 36
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=5.3e-38 Score=310.00 Aligned_cols=367 Identities=14% Similarity=0.073 Sum_probs=246.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||.+.+. .....++..|+++++++|+++|+++++...+. +...+.++
T Consensus 12 ~aGl~~A~~L~~----~G~~v~viE~~~~~~--------~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~ 78 (390)
T TIGR02360 12 PSGLLLGQLLHK----AGIDNVILERQSRDY--------VLGRIRAGVLEQGTVDLLREAGVDERMDREGL-VHEGTEIA 78 (390)
T ss_pred HHHHHHHHHHHH----CCCCEEEEECCCCcc--------cCCceeEeeECHHHHHHHHHCCChHHHHhcCc-eecceEEe
Confidence 689999999999 599999999998631 01123455699999999999999999988665 55666666
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+........+. ............+..|.+.|.+.+.+.+ ++++++++++.+.. ..+..
T Consensus 79 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~L~~~~~~~g-~~~~~~~~~v~~~~-------------------~~~~~ 136 (390)
T TIGR02360 79 FDGQRFRIDLK--ALTGGKTVMVYGQTEVTRDLMEAREAAG-LTTVYDADDVRLHD-------------------LAGDR 136 (390)
T ss_pred eCCEEEEEecc--ccCCCceEEEeCHHHHHHHHHHHHHhcC-CeEEEeeeeEEEEe-------------------cCCCc
Confidence 54433223333 2111122234568899999999988876 79999999888743 12345
Q ss_pred eEEEeC-CCc--EEEeeEEEeecCCCChhhhhhCCCCCCCcccC--eEEEEEEeecCCCCeeEEEecCCCcEEEeecCC-
Q 013000 161 AKLDLS-DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQ--NAIICTVEHNKENYCAWQRFLPAGPIALLPIGD- 234 (451)
Q Consensus 161 v~v~~~-dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~- 234 (451)
+.|++. ||+ ++++|+||||||++|.||++++.......... ..+.+.+....+..........++.+.++|+.+
T Consensus 137 ~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T TIGR02360 137 PYVTFERDGERHRLDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPVSHELIYSNHERGFALCSMRSA 216 (390)
T ss_pred cEEEEEECCeEEEEEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCCCCceEEEeCCCceEEEeccCC
Confidence 667775 775 68999999999999999999865432211111 122232222111111122334566667777754
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeec-Cc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA-SE 313 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 313 (451)
+...+++..+... .......+.+.+.+...+. +. ..+. +.... ..
T Consensus 217 ~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~----~~----------~~~~------------------~~~~~~~~ 262 (390)
T TIGR02360 217 TRSRYYVQVPLTD--KVEDWSDDRFWAELKRRLP----SE----------AAER------------------LVTGPSIE 262 (390)
T ss_pred CcceEEEEcCCCC--ChhhCChhHHHHHHHHhcC----ch----------hhhh------------------hccCCccc
Confidence 3333455544322 1222344555666655332 00 0000 00000 00
Q ss_pred ceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHH
Q 013000 314 RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIV 393 (451)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~ 393 (451)
...+|+.....++|..|||+|||||||.|+|+.|||+|+||+||..|+++|...... ..+.+|+.|++.|++++..
T Consensus 263 ~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~aieDA~~La~~L~~~~~~----~~~~al~~Y~~~R~~r~~~ 338 (390)
T TIGR02360 263 KSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLAASDVHYLYEALLEHYQE----GSSAGIEGYSARALARVWK 338 (390)
T ss_pred eeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhHHHHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHH
Confidence 122455556678899999999999999999999999999999999999999875321 2378999999999999999
Q ss_pred HHHHHHHHHHhhcCC---CchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 394 MMAVLDGFQKAYSVD---FGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 394 ~~~~s~~~~~~~~~~---~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
+++.|+.+..+++.. ..+...++.+-+.-+...|.-+.++..+-.|.
T Consensus 339 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (390)
T TIGR02360 339 AERFSWWMTSLLHRFPDTDAFDQRIQQAELEYLLGSEAAQATLAENYVGL 388 (390)
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhCCHHHHHHHHHhccCC
Confidence 999999999997653 33556667777777888888888888888774
No 37
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=316.96 Aligned_cols=332 Identities=17% Similarity=0.189 Sum_probs=223.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+||||.+.++. .+.|+.|+|+++++|+++|+++++...+. +...+.++
T Consensus 10 ~aGl~~A~~L~~----~G~~v~v~E~~~~~~~----------~g~gi~l~p~~~~~L~~lgl~~~l~~~~~-~~~~~~~~ 74 (413)
T PRK07538 10 IGGLTLALTLHQ----RGIEVVVFEAAPELRP----------LGVGINLLPHAVRELAELGLLDALDAIGI-RTRELAYF 74 (413)
T ss_pred HHHHHHHHHHHh----CCCcEEEEEcCCcccc----------cCcceeeCchHHHHHHHCCCHHHHHhhCC-CCcceEEE
Confidence 689999999999 5999999999988743 34599999999999999999999887665 45667777
Q ss_pred eCCCcceeEeecCC-CCCccceeeechHHHHHHHHHHhhc-CCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQN-TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~i~R~~L~~~L~~~~~~-~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+..+......+... .....+.+.++|..|+++|++.+.+ .|.++|+++++|++++. .+
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--------------------~~ 134 (413)
T PRK07538 75 NRHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--------------------DA 134 (413)
T ss_pred cCCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--------------------cC
Confidence 65554433222111 1112234679999999999999866 35457999999999976 23
Q ss_pred CeeEEEeCCC-----cEEEeeEEEeecCCCChhhhhhCCCCCCCccc-CeEEEEEEeecCCCC-eeEEEec-CCCcEEEe
Q 013000 159 HLAKLDLSDG-----TSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKENY-CAWQRFL-PAGPIALL 230 (451)
Q Consensus 159 ~~v~v~~~dg-----~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~-~~g~~~~~ 230 (451)
.++.+.+.++ ++++||+||||||++|.||+++++......+. ...+.+.++.+.... ..+..++ .++.+.++
T Consensus 135 ~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (413)
T PRK07538 135 DVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVY 214 (413)
T ss_pred CceEEEEeccCCCccceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEE
Confidence 3356666543 38999999999999999999997665333333 334444444332111 1122222 35678888
Q ss_pred ecCCC-----ceEEEEEcCccchH----HhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccccccc
Q 013000 231 PIGDN-----FSNIVWTMNPKDAS----DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 301 (451)
Q Consensus 231 p~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (451)
|+.++ ...+.|.+...... .....+.....+.+...+. +|...-. ++.
T Consensus 215 p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~--------------- 271 (413)
T PRK07538 215 PISEPVDADGRQLINWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFA-DWRFDWL-------DVP--------------- 271 (413)
T ss_pred ECCCCcccCCceEEEEEEEEcCCccCCCcccccCCccCHHHHHHHhc-CCCCCcc-------cHH---------------
Confidence 98753 23455554322110 1111112222333333332 2221100 000
Q ss_pred CCCcceeeecCcceeeecccc-cccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHH
Q 013000 302 EVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLL 380 (451)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l 380 (451)
.++........||+... ++++|..|||+|||||||+|+|++|||+|+||+||..|+++|... .+ .+.+|
T Consensus 272 ----~~i~~~~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~----~~--~~~aL 341 (413)
T PRK07538 272 ----ALIRAAEAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH----GD--PEAAL 341 (413)
T ss_pred ----HHHhcCcceeeccccccCCCCcccCCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc----CC--HHHHH
Confidence 01111122233555543 368899999999999999999999999999999999999999863 12 48899
Q ss_pred HHHHHhhchhhHHHHHHHHH
Q 013000 381 KKYEAERKPANIVMMAVLDG 400 (451)
Q Consensus 381 ~~Ye~~r~~~~~~~~~~s~~ 400 (451)
+.|+++|++++..++..++.
T Consensus 342 ~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 342 AAYEAERRPATAQIVLANRL 361 (413)
T ss_pred HHHHHHhhHHHHHHHHHhhh
Confidence 99999999999999999888
No 38
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=3.3e-39 Score=315.69 Aligned_cols=325 Identities=22% Similarity=0.347 Sum_probs=218.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhccc-ccEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY-FDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~-~~~~~~ 79 (451)
||||++|+.|+++ |++|+||||++.++..+ +|+.|+++++++|+.+|+++.+...+... .....+
T Consensus 11 ~aGl~~A~~L~~~----G~~v~i~E~~~~~~~~~----------~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~ 76 (356)
T PF01494_consen 11 PAGLAAALALARA----GIDVTIIERRPDPRPKG----------RGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFF 76 (356)
T ss_dssp HHHHHHHHHHHHT----TCEEEEEESSSSCCCSS----------SSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEE
T ss_pred HHHHHHHHHHHhc----ccccccchhcccccccc----------cccccccccccccccccchhhhhhhcccccceeeEe
Confidence 6899999999994 99999999999985444 49999999999999999999999877422 233344
Q ss_pred EeC--CCcc-----eeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 013000 80 WDY--TGLG-----YTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 152 (451)
Q Consensus 80 ~~~--~~~~-----~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ 152 (451)
+.. +... ...............+.++|..|+++|.+.+.+.+ ++++++++|++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~g-v~i~~~~~v~~~~~---------------- 139 (356)
T PF01494_consen 77 YDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERG-VDIRFGTRVVSIEQ---------------- 139 (356)
T ss_dssp EEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHT-EEEEESEEEEEEEE----------------
T ss_pred ecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhh-hhheeeeecccccc----------------
Confidence 443 1100 01111111123345578999999999999999998 99999999999976
Q ss_pred ccccCCCeeEEEeC---CCc--EEEeeEEEeecCCCChhhhhhCCCCCCCccc--CeEEEEEEeecCC--CC-eeEEEec
Q 013000 153 TLFTKGHLAKLDLS---DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYS--QNAIICTVEHNKE--NY-CAWQRFL 222 (451)
Q Consensus 153 ~~~~~~~~v~v~~~---dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~--~~~~~~~~~~~~~--~~-~~~~~~~ 222 (451)
+++.+.+.+. +|. +++||+||||||++|.||+++++........ ..++...+....+ .. ..+....
T Consensus 140 ----d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (356)
T PF01494_consen 140 ----DDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSP 215 (356)
T ss_dssp ----ETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEE
T ss_pred ----cccccccccccccCCceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccc
Confidence 3345554443 343 7999999999999999999998774333322 2222222222222 12 2333444
Q ss_pred CCCcEEEeecCC-CceEEEEEcCccch--HHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccccc
Q 013000 223 PAGPIALLPIGD-NFSNIVWTMNPKDA--SDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKE 299 (451)
Q Consensus 223 ~~g~~~~~p~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (451)
+.+.++++|..+ +...+.|....... ........+.+.+.+...+. + .
T Consensus 216 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~----------~ 266 (356)
T PF01494_consen 216 PSGGFAIIPLENGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFG-------------------P----------D 266 (356)
T ss_dssp TTEEEEEEEETTTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHH-------------------T----------C
T ss_pred cccceeEeeccCCccceEEEeeecccccccccccccccccccccccccc-------------------c----------c
Confidence 555568899988 44444444432221 11112223444444444221 0 0
Q ss_pred ccCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHH
Q 013000 300 CFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASL 379 (451)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~ 379 (451)
. ..........|++.....++|.+|||+|||||||+|+|+.|||+|+||+||..|++.|...++.. ..+++
T Consensus 267 ---~---~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~---~~~~~ 337 (356)
T PF01494_consen 267 ---L---LETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGE---ASEEA 337 (356)
T ss_dssp ---H---HHHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTS---SHHHH
T ss_pred ---c---cccccccccccccccccccccccceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCC---cHHHH
Confidence 0 00011223346676777889999999999999999999999999999999999999999987532 34789
Q ss_pred HHHHHHhhchhhHHHHHHH
Q 013000 380 LKKYEAERKPANIVMMAVL 398 (451)
Q Consensus 380 l~~Ye~~r~~~~~~~~~~s 398 (451)
|+.|+++|++++..+++.+
T Consensus 338 l~~Y~~~r~~~~~~~~~~~ 356 (356)
T PF01494_consen 338 LKAYEQERRPRARKAVQFD 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 9999999999999998753
No 39
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=320.77 Aligned_cols=330 Identities=22% Similarity=0.286 Sum_probs=230.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhccc--ccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAY--FDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~--~~~~~ 78 (451)
|+||++|+.|++ +|++|+||||.+.+ ...++++.++++++++|+++|+.+++.+.+... .....
T Consensus 17 paGL~~Al~La~----~G~~v~viEr~~~~----------~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~ 82 (545)
T PRK06126 17 PVGLALALDLGR----RGVDSILVERKDGT----------AFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIA 82 (545)
T ss_pred HHHHHHHHHHHH----CCCcEEEEeCCCCC----------CCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCce
Confidence 789999999999 59999999999876 455679999999999999999999998876421 11222
Q ss_pred EE-eCCCcceeEeecCCC--------------CCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCc
Q 013000 79 VW-DYTGLGYTKYNARDV--------------NKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSI 143 (451)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~--------------~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~ 143 (451)
++ ...+.....+..... ..+...+.++|..|+++|.+.+.+.++++|+++++|++++.
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~------- 155 (545)
T PRK06126 83 YFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ------- 155 (545)
T ss_pred EEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE-------
Confidence 22 222222222221100 11223467999999999999998776699999999999976
Q ss_pred ccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC-----C
Q 013000 144 SVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----E 213 (451)
Q Consensus 144 ~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~ 213 (451)
+++.+.+++. +|+ ++.+|+||||||++|.||+.+++......+....+...+..+. .
T Consensus 156 -------------~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~ 222 (545)
T PRK06126 156 -------------DADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVG 222 (545)
T ss_pred -------------CCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhc
Confidence 3455666663 464 6899999999999999999999887665554444444444321 1
Q ss_pred CCe--eEEEecCCCcEEEeecCCCceEEEEE-cCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccc
Q 013000 214 NYC--AWQRFLPAGPIALLPIGDNFSNIVWT-MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 290 (451)
Q Consensus 214 ~~~--~~~~~~~~g~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (451)
... .+..+.++.+..+++..++. .+.+. ..+.. .....+.+++.+.+.+.+. ..
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~---------------- 279 (545)
T PRK06126 223 HDPAWMYWLFNPDRRGVLVAIDGRD-EWLFHQLRGGE--DEFTIDDVDARAFVRRGVG----ED---------------- 279 (545)
T ss_pred CCCceEEEEECCCccEEEEEECCCC-eEEEEEecCCC--CCCCCCHHHHHHHHHHhcC----CC----------------
Confidence 112 22334466666667765543 22222 22221 1123355666666666332 00
Q ss_pred CCcccccccccCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 291 GDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
++..+.. ...|.+....+++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|...++.
T Consensus 280 ------------~~~~i~~----~~~w~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~ 343 (545)
T PRK06126 280 ------------IDYEVLS----VVPWTGRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNG 343 (545)
T ss_pred ------------CCeEEEe----ecccchhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcC
Confidence 1111111 123666667789999999999999999999999999999999999999999987653
Q ss_pred CCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhc
Q 013000 371 GADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYS 406 (451)
Q Consensus 371 ~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~ 406 (451)
...+.+|+.|+++|++++..++..++.....+.
T Consensus 344 ---~~~~~lL~~Y~~eR~p~~~~~~~~s~~~~~~~~ 376 (545)
T PRK06126 344 ---WAGPALLDSYEAERRPIAARNTDYARRNADALG 376 (545)
T ss_pred ---CCcHHHHhhhHHHhhHHHHHHHHHHHHHHHHhc
Confidence 234789999999999999999999988776654
No 40
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=1.4e-38 Score=317.46 Aligned_cols=340 Identities=19% Similarity=0.237 Sum_probs=227.8
Q ss_pred CcHHHHHHHhcCCCCCCC-cEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcc---cccE
Q 013000 1 MVGMALACSLASMPLTKH-LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHA---YFDK 76 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g-~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~---~~~~ 76 (451)
|+||++|+.|+++ | ++|+||||++.++. .+.|+.|+|+++++|+++|+.+.+...+.. ....
T Consensus 10 iaGla~A~~L~~~----g~~~v~v~Er~~~~~~----------~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~ 75 (414)
T TIGR03219 10 IAGVALALNLCKH----SHLNVQLFEAAPAFGE----------VGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQD 75 (414)
T ss_pred HHHHHHHHHHHhc----CCCCEEEEecCCcCCC----------CccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcc
Confidence 6899999999995 6 69999999988743 445999999999999999998888765421 1122
Q ss_pred EEE--EeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccc
Q 013000 77 MQV--WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTL 154 (451)
Q Consensus 77 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 154 (451)
..+ .++......... . ........++|..|.+.|.+.+. ...++++++|++++.
T Consensus 76 ~~~~~~~~~~~~~~~~~--~-~~~~~~~~i~R~~l~~~L~~~~~---~~~v~~~~~v~~i~~------------------ 131 (414)
T TIGR03219 76 IWFEWRNGSDASYLGAT--I-APGVGQSSVHRADFLDALLKHLP---EGIASFGKRATQIEE------------------ 131 (414)
T ss_pred eeEEEEecCccceeeee--c-cccCCcccCCHHHHHHHHHHhCC---CceEEcCCEEEEEEe------------------
Confidence 211 122111111111 0 11111246899999999999885 257899999999976
Q ss_pred ccCCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCC-----CCCCCcccCeEEEEEEeecCC-----------C--Ce
Q 013000 155 FTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGF-----KTTGWSYSQNAIICTVEHNKE-----------N--YC 216 (451)
Q Consensus 155 ~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~~-----------~--~~ 216 (451)
.+.++.|.++||+++.+|+||||||++|.||+.+.. .......+..++.+.++.... . ..
T Consensus 132 --~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 209 (414)
T TIGR03219 132 --QAEEVQVLFTDGTEYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDV 209 (414)
T ss_pred --cCCcEEEEEcCCCEEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccccccccc
Confidence 446689999999999999999999999999998842 122333455666665543210 0 11
Q ss_pred eEEEecCCCcEEEeecCCCce-EEEEEcCccchH-----HhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCccccccccc
Q 013000 217 AWQRFLPAGPIALLPIGDNFS-NIVWTMNPKDAS-----DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFR 290 (451)
Q Consensus 217 ~~~~~~~~g~~~~~p~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (451)
....++++++++++|+.++.. +++++....... .......+...+.+.+.+. +|++. ..++++.
T Consensus 210 ~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------v~~~~~~-- 279 (414)
T TIGR03219 210 PQMYLGLDGHILTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFA-GWGDA-------ARALLEC-- 279 (414)
T ss_pred ceEEEcCCCeEEEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhc-CCCHH-------HHHHHHh--
Confidence 223456788888999988764 333333221100 0001111222334444443 44332 1111111
Q ss_pred CCcccccccccCCCcceeeecCcceeeecccc-cccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 291 GDATLSAKECFEVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
......|++... .+++|..|||+|||||||+|+|+.|||+|+||+||..|+++|.....
T Consensus 280 --------------------~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~ 339 (414)
T TIGR03219 280 --------------------IPAPTLWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTEL 339 (414)
T ss_pred --------------------CCCCCceeeeecccccceeeCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhcc
Confidence 111112333322 36789999999999999999999999999999999999999987543
Q ss_pred cCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCCchH
Q 013000 370 VGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDFGPL 412 (451)
Q Consensus 370 ~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~~~~~~ 412 (451)
+.. ..+.+|+.|+++|++++..+++.++.+..+++..++..
T Consensus 340 ~~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~~~~~ 380 (414)
T TIGR03219 340 EAG--DLPALLEAYDDVRRPRACRVQRTSREAGELYELRDPAV 380 (414)
T ss_pred Ccc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCChhc
Confidence 322 34899999999999999999999999999988766543
No 41
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=1.2e-37 Score=316.23 Aligned_cols=380 Identities=17% Similarity=0.109 Sum_probs=251.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|++ +|++|+|+||++.. ......|+.|+|+++++|+++|+++.+..... +..++.++
T Consensus 43 iaGlalA~aLar----~G~~V~VlEr~~~~---------~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~-~~~~~~v~ 108 (567)
T PTZ00367 43 IAGPVLAKALSK----QGRKVLMLERDLFS---------KPDRIVGELLQPGGVNALKELGMEECAEGIGM-PCFGYVVF 108 (567)
T ss_pred HHHHHHHHHHHh----cCCEEEEEcccccc---------ccchhhhhhcCHHHHHHHHHCCChhhHhhcCc-ceeeeEEE
Confidence 689999999999 59999999998732 01233588899999999999999999877665 47778888
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHh--hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCM--QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~--~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+.++... ..+. .....++.++|.+|.+.|.+.+ ...++++++. .+|+++..+... . .+..
T Consensus 109 ~~~G~~~-~i~~---~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~-~~v~~l~~~~~~---------~----~~~v 170 (567)
T PTZ00367 109 DHKGKQV-KLPY---GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLE-GTVNSLLEEGPG---------F----SERA 170 (567)
T ss_pred ECCCCEE-EecC---CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEE-eEEEEeccccCc---------c----CCee
Confidence 7655332 2221 1223467889999999999988 3345688865 478887541100 0 0001
Q ss_pred CeeEEEeCC-----------------------CcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEe-ecCCC
Q 013000 159 HLAKLDLSD-----------------------GTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN 214 (451)
Q Consensus 159 ~~v~v~~~d-----------------------g~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 214 (451)
.+|++.+.+ |+++.||+||||||++|.||++++.......+...+....+. ...+.
T Consensus 171 ~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~~~~~lp~ 250 (567)
T PTZ00367 171 YGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVLKNVRLPK 250 (567)
T ss_pred EEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEEecccCCC
Confidence 234444333 668999999999999999999997654333333322222111 12222
Q ss_pred -CeeEEEecCCCcEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCc
Q 013000 215 -YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDA 293 (451)
Q Consensus 215 -~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (451)
......+.++++++++|++++...+++..+.... .+.++..+.+.+.....+. .++.+.+...
T Consensus 251 ~~~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~-----p~~~~~~~~l~~~~~p~l~----------~~l~~~f~~~- 314 (567)
T PTZ00367 251 EQHGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL-----PSLEEQSEWLIEDVAPHLP----------ENMRESFIRA- 314 (567)
T ss_pred CCeeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC-----CChHHHHHHHHHhhcccCc----------HHHHHHHHHh-
Confidence 2333456899999999999887665544433211 0111222222221110000 0011111000
Q ss_pred ccccccccCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh-cCC
Q 013000 294 TLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA-VGA 372 (451)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~-~~~ 372 (451)
.........+|....+...|..+|++|||||||+|+|++|||+|+||+||..|++.|..... .+.
T Consensus 315 --------------l~~~~~l~~~p~~~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~ 380 (567)
T PTZ00367 315 --------------SKDTKRIRSMPNARYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSI 380 (567)
T ss_pred --------------hcccCCeEEeeHhhCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCC
Confidence 00000111234444445567789999999999999999999999999999999999976431 011
Q ss_pred CC----ChHHHHH----HHHHhhchhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCCCC
Q 013000 373 DI----GEASLLK----KYEAERKPANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLP 444 (451)
Q Consensus 373 ~~----~~~~~l~----~Ye~~r~~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~~~ 444 (451)
+. ..+.+|+ .|++.|++++..++..++.+.++|+. ..+|+..|..+..-.....-.+..++|+...|
T Consensus 381 d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~ls~aL~~lf~~-----~~lr~~~~~y~~~gg~~~~~p~~ll~g~~~~p 455 (567)
T PTZ00367 381 DQNEMAEIEDAIQAAILSYARNRKTHASTINILSWALYSVFSS-----PALRDACLDYFSLGGECVTGPMSLLSGLDPSP 455 (567)
T ss_pred CchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhcCCccccccHHHHcCCCCCc
Confidence 11 2256777 99999999999999999999999977 57999999999888788888999999999888
Q ss_pred CCC
Q 013000 445 LPL 447 (451)
Q Consensus 445 ~~~ 447 (451)
..|
T Consensus 456 ~~l 458 (567)
T PTZ00367 456 GGL 458 (567)
T ss_pred HHH
Confidence 643
No 42
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-37 Score=307.27 Aligned_cols=329 Identities=19% Similarity=0.164 Sum_probs=222.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|+++ |++|+|+||.+.+. ...+.|+.++++++++|+++|+.+.. ..+. +.....++
T Consensus 16 ~aGl~~A~~L~~~----G~~v~v~E~~~~~~---------~~~g~gi~l~~~~~~~l~~lg~~~~~-~~~~-~~~~~~~~ 80 (386)
T PRK07236 16 LGGLFAALLLRRA----GWDVDVFERSPTEL---------DGRGAGIVLQPELLRALAEAGVALPA-DIGV-PSRERIYL 80 (386)
T ss_pred HHHHHHHHHHHhC----CCCEEEEecCCCCc---------CCCCceeEeCHHHHHHHHHcCCCccc-cccc-CccceEEE
Confidence 6899999999994 99999999997541 22345899999999999999998765 4343 44455566
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+.++......+. ....+.|..|.+.|.+.+ +.++|+++++|++++. .+..
T Consensus 81 ~~~g~~~~~~~~-------~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~--------------------~~~~ 130 (386)
T PRK07236 81 DRDGRVVQRRPM-------PQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQ--------------------DGDR 130 (386)
T ss_pred eCCCCEeeccCC-------CccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEe--------------------cCCe
Confidence 655433222211 112357889999998876 3478999999999976 4567
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeec---CCC-----CeeEEEecCCCcEEEeec
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN---KEN-----YCAWQRFLPAGPIALLPI 232 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~g~~~~~p~ 232 (451)
++|+++||+++.+|+||||||++|.||+++.+.......+...+.+.+... ... ........++++++.+|+
T Consensus 131 v~v~~~~g~~~~ad~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (386)
T PRK07236 131 VTARFADGRRETADLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPV 210 (386)
T ss_pred EEEEECCCCEEEeCEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEEC
Confidence 999999999999999999999999999999544333333444444444321 111 112223356677888887
Q ss_pred CC---------CceEEEEEcCccchHHhh-----------------cCCHHHHHHHHHHhhccCCCCCCCCCCCCccccc
Q 013000 233 GD---------NFSNIVWTMNPKDASDCK-----------------SMNEDDFVKILNHALDYGYGPHPKSISSGSVDMF 286 (451)
Q Consensus 233 ~~---------~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 286 (451)
++ ...+++|+.+........ ....+.+.+.+.+.+...|++. ..+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~ 283 (386)
T PRK07236 211 PGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPV-------FAELV 283 (386)
T ss_pred CCCCCCcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHH-------HHHHH
Confidence 64 234677776543211000 0012334444444333123221 00011
Q ss_pred ccccCCcccccccccCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 287 SWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
........+++.....+.|..|||+|||||||+|+|+.|||+|+||+||..|+++|..
T Consensus 284 ----------------------~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~ 341 (386)
T PRK07236 284 ----------------------EATAQPFVQAIFDLEVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAA 341 (386)
T ss_pred ----------------------hhCcCchhhhhhcccCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 1111111133333445788999999999999999999999999999999999999976
Q ss_pred hhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCC
Q 013000 367 GIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 367 ~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~~ 408 (451)
.. .+ ...+|+.|++.|++++..++..++.++..++..
T Consensus 342 ~~---~~--~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~ 378 (386)
T PRK07236 342 AA---GD--IDAALAAWEAERLAVGAAIVARGRRLGARLQAQ 378 (386)
T ss_pred cc---cc--hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 42 12 478999999999999999999999999987543
No 43
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.2e-36 Score=279.67 Aligned_cols=423 Identities=35% Similarity=0.584 Sum_probs=347.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+|+++|+.|...+--+-.+|.++|-...|.-..+ .+.+...-+-..++|+....++.+|.|+.+.....+++.++.+|
T Consensus 46 pvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~-~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~~~~~~~~v~ 124 (481)
T KOG3855|consen 46 PVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF-KPSETFSNRVSSISPASISLFKSIGAWDHIFHDRYQKFSRMLVW 124 (481)
T ss_pred hHHHHHHHHhccCCccchheeeEEecccCcccccc-ccCccccceeecCCcchHHHHHhcCHHHHhhhhccccccceeee
Confidence 68999999999764445679999999966533333 33355567788999999999999999999999999899999999
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHH--HHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLL--SCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~--~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
|+.....+.|..+....+ .++.+...-++-.|+ ....+..+++|....++.++... ..-. ..+++
T Consensus 125 Ds~s~a~I~~~~d~~~~d-~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~-------~~l~-----~~~n~ 191 (481)
T KOG3855|consen 125 DSCSAALILFDHDNVGID-MAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIP-------EYLI-----KNDNG 191 (481)
T ss_pred cccchhhhhhcccccccc-ceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccc-------cccC-----CCCCc
Confidence 999988888876554433 367888888888888 45556678999999999998651 0000 11356
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC---CCeeEEEecCCCcEEEeecCCC
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE---NYCAWQRFLPAGPIALLPIGDN 235 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~p~~~~ 235 (451)
..+.++..||..+..|++|||||.||.||+..+++.....|.+++..+...++.+ ...+|++|.|.|++.+.|+.++
T Consensus 192 ~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~GpiAllpl~d~ 271 (481)
T KOG3855|consen 192 MWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGPIALLPLSDT 271 (481)
T ss_pred ceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCceeecccccc
Confidence 7788999999999999999999999999999999999999999999998888763 3889999999999999999999
Q ss_pred ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCC-----cccc-cccccCCcccccccccCCCcceee
Q 013000 236 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSG-----SVDM-FSWFRGDATLSAKECFEVPPRVVK 309 (451)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 309 (451)
...++|.+.++..+....+.++.|.+.+...|...+..-....... ..+. ..++....+.. ....|+.+.+
T Consensus 272 ~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~---~~q~pp~V~~ 348 (481)
T KOG3855|consen 272 LSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLA---NQQYPPSVFE 348 (481)
T ss_pred cccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccc---ccccCCeEEE
Confidence 9999999999988888999999999999998864443222211100 0000 11222221111 1146777777
Q ss_pred ecCc-ceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhc
Q 013000 310 LASE-RMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERK 388 (451)
Q Consensus 310 ~~~~-~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~ 388 (451)
.... +..||+...+++.+..+|+.|+|||||.++|..|||.|+++.|...|...|..+...+-|+.+..-|+.|+.+|.
T Consensus 349 v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L~~y~~~~~ 428 (481)
T KOG3855|consen 349 VGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHLEPYERERL 428 (481)
T ss_pred ecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhhhHHHHHHh
Confidence 7665 555999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhhccChhHHHHHHHHhhCC
Q 013000 389 PANIVMMAVLDGFQKAYSVDFGPLNILRAAAFHGAQYISPLKRNIISYASGE 440 (451)
Q Consensus 389 ~~~~~~~~~s~~~~~~~~~~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~ 440 (451)
+....++.....+.+.|+.+.++.-.+|...+.+.+..+++++.++.+.++-
T Consensus 429 ~~N~~ll~~vdkl~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~~~ 480 (481)
T KOG3855|consen 429 QHNYVLLGAVDKLHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTASKK 480 (481)
T ss_pred hhcchHHHHHHHHHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHhcC
Confidence 9999999999999999999988888899999999999999999999988763
No 44
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=5e-35 Score=298.23 Aligned_cols=340 Identities=16% Similarity=0.149 Sum_probs=222.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCceeeecHHHHHHHHHCCC--chhhhhhhcccccEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIGA--WQYVQQHRHAYFDKM 77 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl--~~~~~~~~~~~~~~~ 77 (451)
|+||++|+.|+| +|++|+||||++.. +..| ...+++.|+++++++|+++|+ .+++.+.+......+
T Consensus 91 IaGLalAlaL~r----~Gi~V~V~Er~~~~~r~~G-------~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i 159 (668)
T PLN02927 91 IGGLVFALAAKK----KGFDVLVFEKDLSAIRGEG-------KYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI 159 (668)
T ss_pred HHHHHHHHHHHh----cCCeEEEEecccccccccc-------ccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence 689999999999 59999999998742 1111 112479999999999999985 566666554221222
Q ss_pred -EEEeC-CCcceeEeecCC---CCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 013000 78 -QVWDY-TGLGYTKYNARD---VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSAT 152 (451)
Q Consensus 78 -~~~~~-~~~~~~~~~~~~---~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ 152 (451)
.+.+. .+.....++... ....+.++.++|..|+++|.+.+. ...++++++|++++.
T Consensus 160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~---------------- 220 (668)
T PLN02927 160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFED---------------- 220 (668)
T ss_pred eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEE----------------
Confidence 12232 222233333211 011234578999999999988774 235789999999976
Q ss_pred ccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC--CeeEEE-ecCCCcEEE
Q 013000 153 TLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN--YCAWQR-FLPAGPIAL 229 (451)
Q Consensus 153 ~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~g~~~~ 229 (451)
.++.|+|.+.||+++.+|+||||||++|.+|+.+.........+..++.+.++..... ...+.. .+...++..
T Consensus 221 ----~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~ 296 (668)
T PLN02927 221 ----SGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVS 296 (668)
T ss_pred ----eCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEE
Confidence 4577999999999999999999999999999999544444444555555555442211 111222 345556666
Q ss_pred eecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceee
Q 013000 230 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVK 309 (451)
Q Consensus 230 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (451)
+|..++...++++...... .....+...+.+.+.+. +|.+.. .++++. .+ .
T Consensus 297 ~~v~~g~~~~~~f~~~p~~---~~~~~~~~~e~L~~~f~-~w~~~v-------~elI~~----t~----------~---- 347 (668)
T PLN02927 297 SDVGGGKMQWYAFHEEPAG---GADAPNGMKKRLFEIFD-GWCDNV-------LDLLHA----TE----------E---- 347 (668)
T ss_pred EcCCCCeEEEEEEEECCcc---ccccchhHHHHHHHHhc-cCCHHH-------HHHHHh----Cc----------c----
Confidence 7776665544333222110 11123455666666555 554331 111111 00 0
Q ss_pred ecCcceeeecccc-cccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc----CCCCChHHHHHHHH
Q 013000 310 LASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GADIGEASLLKKYE 384 (451)
Q Consensus 310 ~~~~~~~~~~~~~-~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~----~~~~~~~~~l~~Ye 384 (451)
.....|++... ...+|..|||+|+|||||+|+|+.|||+|+||+||..|+++|..+.+. +.+...+.+|+.|+
T Consensus 348 --~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye 425 (668)
T PLN02927 348 --DAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYE 425 (668)
T ss_pred --ccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHH
Confidence 00112333332 245799999999999999999999999999999999999999886532 11234589999999
Q ss_pred HhhchhhHHHHHHHHHHHHhh
Q 013000 385 AERKPANIVMMAVLDGFQKAY 405 (451)
Q Consensus 385 ~~r~~~~~~~~~~s~~~~~~~ 405 (451)
++|++++..++..++....++
T Consensus 426 ~~R~~rv~~i~~~ar~a~~~~ 446 (668)
T PLN02927 426 ESRRLRVAIIHAMARMAAIMA 446 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999866655554
No 45
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=9e-34 Score=264.76 Aligned_cols=322 Identities=20% Similarity=0.257 Sum_probs=192.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
++||++|++|+| +|++|+|+|++..+|..| +++++.-++.++|+.+|+.+.+.+.+.+-...+-+.
T Consensus 12 I~Gla~A~~l~r----~G~~v~VlE~~e~~R~~g----------~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~ 77 (420)
T KOG2614|consen 12 IVGLATALALHR----KGIDVVVLESREDPRGEG----------TSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIH 77 (420)
T ss_pred HHHHHHHHHHHH----cCCeEEEEeeccccccCC----------cceeehhhHHHHHHHcccHHHHHHhcCcccceeeee
Confidence 589999999999 699999999998885444 499999999999999999999999888333344445
Q ss_pred eCCCcceeEeecCCCCCccceee-echHHHHHHHHHHhhcCCCceEEcCCe------eEEEEeCCCCCCcccCCCCCccc
Q 013000 81 DYTGLGYTKYNARDVNKEILGCV-VENKVLHSSLLSCMQNTEFQKTIYPSR------LTSMALLPSSSSISVDSTPSATT 153 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-i~R~~L~~~L~~~~~~~g~v~i~~~~~------v~~~~~~~~~~~~~~~~~~~~~~ 153 (451)
...++....+...+ .+.+-.+ +.|..+..+|.+..+ .+ +|+++.. +..++.
T Consensus 78 ~~sg~~~~~~~~~~--~~~~i~r~~~r~ll~~lL~~a~~-~~--~ikf~~~~~~~~~~~~~~~----------------- 135 (420)
T KOG2614|consen 78 GDSGKEVSRILYGE--PDEYILRINRRNLLQELLAEALP-TG--TIKFHSNLSCTSKDVEIET----------------- 135 (420)
T ss_pred cCCCCeeEecccCC--chHHHHHHHHHHHHHHHHHhhcC-CC--eeecccccccccccceeee-----------------
Confidence 55555555554322 2222233 445555555555554 44 5555542 222221
Q ss_pred cccCCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEE--EeecCCCCeeEEEecCCCcEEEee
Q 013000 154 LFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICT--VEHNKENYCAWQRFLPAGPIALLP 231 (451)
Q Consensus 154 ~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~p 231 (451)
.+....+.+.||.++++|+||||||++|.||++++... +......++++. ++...+...- .....++.+..-|
T Consensus 136 ---~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~~~~~~~~~~~~-vf~~~~~~~~~~~ 210 (420)
T KOG2614|consen 136 ---LGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLGFIPNGIPFGKK-VFAIYGNGLHSWP 210 (420)
T ss_pred ---cccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeeeeccCCCCcccc-eecccCCeEEEcc
Confidence 44557788899999999999999999999999998775 333334444443 3333222111 1112333444444
Q ss_pred cCCCceEEEEEc----------CccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccccccc
Q 013000 232 IGDNFSNIVWTM----------NPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 301 (451)
Q Consensus 232 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (451)
.+.....++|.. +.++.+.... ...+..+.+.+.++ ++++- .+. +
T Consensus 211 ~~~~~~~~y~~~~k~~t~t~~~~~~e~~~l~~-~~~~v~~~~~en~~---------------d~i~~-~~~------e-- 265 (420)
T KOG2614|consen 211 RPGFHLIAYWFLDKSLTSTDFAPFDEPEKLKK-TSLEVVDFFPENFP---------------DIIEL-TGE------E-- 265 (420)
T ss_pred cCCceEEEEEeecCCcccccccCcCCHHHHhh-hHHHHHHHhHHhHH---------------HHHHh-cCh------H--
Confidence 444444455544 2222222211 11111111111111 11110 000 0
Q ss_pred CCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc----CCCCC--
Q 013000 302 EVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV----GADIG-- 375 (451)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~----~~~~~-- 375 (451)
.-+......+..||+-. .+...++|+|+|||||+|.|+.|||+|.||||+.+||++|.++... .+...
T Consensus 266 ---~i~~t~l~~r~p~~~i~---~~~s~~~vvL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~ 339 (420)
T KOG2614|consen 266 ---SIVRTPLADRPPWPLIS---VKCSPGNVVLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRE 339 (420)
T ss_pred ---HhhhchhhhcCCcCeee---eccCCCeEEEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecc
Confidence 00000011111122222 2334569999999999999999999999999999999999998651 11222
Q ss_pred ------hHHHHHHHHHhhchhhHHH
Q 013000 376 ------EASLLKKYEAERKPANIVM 394 (451)
Q Consensus 376 ------~~~~l~~Ye~~r~~~~~~~ 394 (451)
.+.++..|..+|..+.-+.
T Consensus 340 ~e~~~~ie~a~~~Y~~~r~~r~~rl 364 (420)
T KOG2614|consen 340 NESHAIIELAMYSYKEERWRRLLRL 364 (420)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhh
Confidence 4678889999985554433
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.98 E-value=9.9e-30 Score=253.56 Aligned_cols=323 Identities=17% Similarity=0.155 Sum_probs=210.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.|++ +|++|+|+||.+. ..+.| |..|+ ...|+++|+.+++.... +..+.++
T Consensus 49 PAG~~aA~~LA~----~G~~VlllEr~~~-~~k~c----------gg~i~---~~~l~~lgl~~~~~~~~---i~~~~~~ 107 (450)
T PLN00093 49 PAGACAAETLAK----GGIETFLIERKLD-NAKPC----------GGAIP---LCMVGEFDLPLDIIDRK---VTKMKMI 107 (450)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCC-CCCCc----------ccccc---HhHHhhhcCcHHHHHHH---hhhheEe
Confidence 799999999999 5999999999863 33445 66665 35678889887776643 3445555
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
...+ ....+... .....+...++|..|++.|.+++.+.| ++++.+ +++++.. ..+ .++.
T Consensus 108 ~p~~-~~v~~~~~-~~~~~~~~~v~R~~~d~~L~~~A~~~G-a~~~~~-~v~~i~~---------~~~--------~~~~ 166 (450)
T PLN00093 108 SPSN-VAVDIGKT-LKPHEYIGMVRREVLDSFLRERAQSNG-ATLING-LFTRIDV---------PKD--------PNGP 166 (450)
T ss_pred cCCc-eEEEeccc-CCCCCeEEEecHHHHHHHHHHHHHHCC-CEEEec-eEEEEEe---------ccC--------CCCc
Confidence 4433 23333311 112223346999999999999999987 899876 5777753 000 1234
Q ss_pred eEEEeCC-------C--cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC-----CCCeeEEEe----c
Q 013000 161 AKLDLSD-------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYCAWQRF----L 222 (451)
Q Consensus 161 v~v~~~d-------g--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~ 222 (451)
+.|++.+ | .+++||+||||||++|.||++++..... + ..++...+.... ........+ .
T Consensus 167 ~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 243 (450)
T PLN00093 167 YVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGDYD--Y-AIAFQERIKIPDDKMEYYEDLAEMYVGDDVS 243 (450)
T ss_pred EEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHhCCCCcc--e-eEEEEEEEeCChhhccccCCeEEEEeCCCCC
Confidence 5565532 3 4799999999999999999999875311 1 122222222221 111222222 3
Q ss_pred CCCcEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccC
Q 013000 223 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 302 (451)
Q Consensus 223 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (451)
|++|.|+||.++ ..++....... ..+...+.+.+...+... +.+
T Consensus 244 p~~Y~WifP~g~-~~~VG~g~~~~------~~~~~~~~~~l~~~~~~~------------------l~~----------- 287 (450)
T PLN00093 244 PDFYGWVFPKCD-HVAVGTGTVVN------KPAIKKYQRATRNRAKDK------------------IAG----------- 287 (450)
T ss_pred CCceEEEEECCC-cEEEEEEEccC------CCChHHHHHHHHHHhhhh------------------cCC-----------
Confidence 678999999985 44555532211 123334444443321100 000
Q ss_pred CCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q 013000 303 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 382 (451)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~ 382 (451)
.+.. ....+++.....++|..+|++|||||||.++|++|+|++.||.+|..+|+.+.+++..+.+......|+.
T Consensus 288 --~~~~----~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~ 361 (450)
T PLN00093 288 --GKII----RVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLRE 361 (450)
T ss_pred --CeEE----EEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHH
Confidence 0001 1111333334456788899999999999999999999999999999999999998865432224678999
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhcCCCc
Q 013000 383 YEAERKPANIVMMAVLDGFQKAYSVDFG 410 (451)
Q Consensus 383 Ye~~r~~~~~~~~~~s~~~~~~~~~~~~ 410 (451)
|++.++......+..+..+.++|..+++
T Consensus 362 Y~~~~~~~~g~~~~~~~~l~~~~~~~~~ 389 (450)
T PLN00093 362 YLRKWDKKYWPTYKVLDILQKVFYRSNP 389 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9999999999999999999999866444
No 47
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.97 E-value=3.7e-29 Score=247.25 Aligned_cols=312 Identities=18% Similarity=0.192 Sum_probs=208.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.|++ +|++|+|+|+.. ++.+.| |..+++ ++|+.+|+.+++... .+.+..++
T Consensus 10 pAG~~aA~~La~----~G~~V~l~E~~~-~~~~~c----------g~~i~~---~~l~~l~i~~~~~~~---~~~~~~~~ 68 (388)
T TIGR02023 10 PSGATAAETLAR----AGIETILLERAL-SNIKPC----------GGAIPP---CLIEEFDIPDSLIDR---RVTQMRMI 68 (388)
T ss_pred HHHHHHHHHHHh----CCCcEEEEECCC-CCcCcC----------cCCcCH---hhhhhcCCchHHHhh---hcceeEEE
Confidence 799999999999 599999999982 322334 666765 457888988877664 34667777
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..++.. ...... ....+...++|..|++.|.+++.+.| ++++.+ +|+++.. .++.
T Consensus 69 ~~~~~~-~~~~~~--~~~~~~~~~~r~~fd~~L~~~a~~~G-~~v~~~-~v~~v~~--------------------~~~~ 123 (388)
T TIGR02023 69 SPSRVP-IKVTIP--SEDGYVGMVRREVFDSYLRERAQKAG-AELIHG-LFLKLER--------------------DRDG 123 (388)
T ss_pred cCCCce-eeeccC--CCCCceEeeeHHHHHHHHHHHHHhCC-CEEEee-EEEEEEE--------------------cCCe
Confidence 655422 122111 11222236999999999999999886 899766 6988865 3456
Q ss_pred eEEEeCC------C--cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecC-----CCCe--eEEE--ecC
Q 013000 161 AKLDLSD------G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNK-----ENYC--AWQR--FLP 223 (451)
Q Consensus 161 v~v~~~d------g--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~--~~~ 223 (451)
+.|++.+ | .+++||+||+|||.+|.||+.++.+.... . ..++...+.... .... .+.. +.+
T Consensus 124 ~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~-~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 201 (388)
T TIGR02023 124 VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKELGLPKNLP-R-VIAYQERIKLPDDKMAYYEELADVYYGGEVSP 201 (388)
T ss_pred EEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHcCCCCCCc-E-EEEEEEEecCCchhcccCCCeEEEEECCCcCC
Confidence 6777653 2 37999999999999999999998763211 1 122222232111 1111 1211 346
Q ss_pred CCcEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCC
Q 013000 224 AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEV 303 (451)
Q Consensus 224 ~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (451)
+++.|++|.++ ..++....... ..+.+++.+.+...+. ... .
T Consensus 202 ~~y~wv~P~~~-~~~vg~~~~~~------~~~~~~~~~~l~~~~~--~~~---------~-------------------- 243 (388)
T TIGR02023 202 DFYGWVFPKGD-HIAVGTGTGTH------GFDAKQLQANLRRRAG--LDG---------G-------------------- 243 (388)
T ss_pred CceEEEeeCCC-eeEEeEEECCC------CCCHHHHHHHHHHhhC--CCC---------c--------------------
Confidence 78999999975 45555432211 1344555555555321 000 0
Q ss_pred CcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q 013000 304 PPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKY 383 (451)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Y 383 (451)
. ... ....++.....++|..++++|+|||||.++|++|+|+++||++|..+|+.|.+++..+ ....|+.|
T Consensus 244 -~-~~~----~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~----~~~~L~~Y 313 (388)
T TIGR02023 244 -Q-TIR----REAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG----DATDLRHY 313 (388)
T ss_pred -e-Eee----eeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHH
Confidence 0 000 0011222234567888999999999999999999999999999999999999988653 15779999
Q ss_pred HHhhchhhHHHHHHHHHHHHhhcCC
Q 013000 384 EAERKPANIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 384 e~~r~~~~~~~~~~s~~~~~~~~~~ 408 (451)
++.++.........++.+..++..+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (388)
T TIGR02023 314 ERKFMKLYGTTFRVLRVLQMVYYRS 338 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999988888888888877444
No 48
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.97 E-value=3.5e-28 Score=240.34 Aligned_cols=321 Identities=19% Similarity=0.161 Sum_probs=207.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.|++ +|++|+|+||.+.+ .+.| |..+++ ..|+++|+.+++.... +.+..++
T Consensus 10 PAG~~aA~~la~----~G~~V~llE~~~~~-~~~c----------g~~i~~---~~l~~~g~~~~~~~~~---i~~~~~~ 68 (398)
T TIGR02028 10 PAGASAAETLAS----AGIQTFLLERKPDN-AKPC----------GGAIPL---CMVDEFALPRDIIDRR---VTKMKMI 68 (398)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCCC-CCCc----------cccccH---hhHhhccCchhHHHhh---hceeEEe
Confidence 799999999999 59999999998643 3445 666654 5678889887766533 3455555
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..++ ....+.... ....+.+.++|..|++.|.+++.+.| ++++.++ +++++. .+. .+..
T Consensus 69 ~p~~-~~~~~~~~~-~~~~~~~~v~R~~~d~~L~~~a~~~G-~~v~~~~-~~~i~~---------~~~--------~~~~ 127 (398)
T TIGR02028 69 SPSN-IAVDIGRTL-KEHEYIGMLRREVLDSFLRRRAADAG-ATLINGL-VTKLSL---------PAD--------ADDP 127 (398)
T ss_pred cCCc-eEEEeccCC-CCCCceeeeeHHHHHHHHHHHHHHCC-cEEEcce-EEEEEe---------ccC--------CCce
Confidence 5443 223332111 11223346999999999999999987 8998884 777643 000 1233
Q ss_pred eEEEe--CC-----C--cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC-----CCeeEEE----ec
Q 013000 161 AKLDL--SD-----G--TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-----NYCAWQR----FL 222 (451)
Q Consensus 161 v~v~~--~d-----g--~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~ 222 (451)
+.|++ .+ | .+++||+||||||++|.||+.++..... ....+...+..+.+ ....... +.
T Consensus 128 ~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 204 (398)
T TIGR02028 128 YTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEIDAGDYS---YAIAFQERIRLPDEKMAYYDDLAEMYVGDDVS 204 (398)
T ss_pred EEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHhCCCCcc---eEEEEEEEeeCChhhcccCCCeEEEEeCCCCC
Confidence 44443 22 3 3799999999999999999999865221 11222222232211 1112222 34
Q ss_pred CCCcEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccC
Q 013000 223 PAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 302 (451)
Q Consensus 223 ~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (451)
|++|.|+||.++ ..++...... .....+.+.+.+...+.... .+
T Consensus 205 p~gY~WifP~~~-~~~VG~g~~~------~~~~~~~~~~~l~~~~~~~~------------------~~----------- 248 (398)
T TIGR02028 205 PDFYGWVFPKCD-HVAVGTGTVA------AKPEIKRLQSGIRARAAGKV------------------AG----------- 248 (398)
T ss_pred CCceEEEEECCC-eEEEEEEeCC------CCccHHHHHHhhhhhhhhcc------------------CC-----------
Confidence 778999999985 4455553211 11123344444433111000 00
Q ss_pred CCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q 013000 303 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 382 (451)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~ 382 (451)
..... ....++.....+++..++++|||||||.++|++|+|++.||.+|..+|+.+.++++.+.+...+..|+.
T Consensus 249 --~~~~~----~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~ 322 (398)
T TIGR02028 249 --GRIIR----VEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAG 322 (398)
T ss_pred --CcEEE----EEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHH
Confidence 00011 111222223346777899999999999999999999999999999999999998876543234678999
Q ss_pred HHHhhchhhHHHHHHHHHHHHhhcCC
Q 013000 383 YEAERKPANIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 383 Ye~~r~~~~~~~~~~s~~~~~~~~~~ 408 (451)
|++.++....+.+..+..+.+++..+
T Consensus 323 Y~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (398)
T TIGR02028 323 YLRRWDKEYRPTYRVLDLLQRVFYRS 348 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999988654
No 49
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=2.2e-29 Score=267.00 Aligned_cols=319 Identities=16% Similarity=0.149 Sum_probs=204.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCC--CchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG--AWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lg--l~~~~~~~~~~~~~~~~ 78 (451)
||||++|+.|++.+ .|++|+|+||++..+..|+ |+.+++++++.|+.++ +.+.+..... ....+.
T Consensus 10 pAGLaaAi~L~~~~--~G~~V~vlEr~~~~~~~G~----------Gi~ls~~~l~~L~~~~~~~~~~~~~~~~-~~~~~~ 76 (765)
T PRK08255 10 PAGLYFALLMKLLD--PAHEVTVVERNRPYDTFGW----------GVVFSDATLGNLRAADPVSAAAIGDAFN-HWDDID 76 (765)
T ss_pred HHHHHHHHHHHHhC--CCCeEEEEecCCCCcccCc----------ceEccHHHHHHHHhcCHHHHHHHHHhcc-cCCceE
Confidence 69999999999931 2899999999998755555 9999999999998876 3333333221 233344
Q ss_pred EEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 79 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
++.. +... . . .....+.++|.+|.++|.+++.+.+ ++|+++++|+++..
T Consensus 77 ~~~~-g~~~-~-~-----~g~~~~~i~R~~L~~~L~e~a~~~G-V~i~~g~~v~~i~~---------------------- 125 (765)
T PRK08255 77 VHFK-GRRI-R-S-----GGHGFAGIGRKRLLNILQARCEELG-VKLVFETEVPDDQA---------------------- 125 (765)
T ss_pred EEEC-CEEE-E-E-----CCeeEecCCHHHHHHHHHHHHHHcC-CEEEeCCccCchhh----------------------
Confidence 4322 2111 1 1 1111246999999999999999987 99999999887632
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCC---CcccCeEEEEEEeecCCCCeeEEEecCCCcE--EEeecC
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTG---WSYSQNAIICTVEHNKENYCAWQRFLPAGPI--ALLPIG 233 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~p~~ 233 (451)
....+|+||||||++|.||+++.....+ .......+.+.... .........-...+++ ..+|+.
T Consensus 126 ----------~~~~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~w~g~~~~-~~~~~~~~~~~~~g~~~~~~y~~~ 194 (765)
T PRK08255 126 ----------LAADADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFVWLGTHKV-FDAFTFAFEETEHGWFQAHAYRFD 194 (765)
T ss_pred ----------hhcCCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceEEecCCCc-ccceeEEEEecCCceEEEEEeeeC
Confidence 0147999999999999999987422211 11111111111100 0111111111234443 346777
Q ss_pred CCceEEEEEcCccchHH--hhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeec
Q 013000 234 DNFSNIVWTMNPKDASD--CKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLA 311 (451)
Q Consensus 234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (451)
++...+++.+..+.... ....+.++..+.+.+.|. +|.+... ++.. . ...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~-~~~~~~~--------li~~------------------~-~~~ 246 (765)
T PRK08255 195 DDTSTFIVETPEEVWRAAGLDEMSQEESIAFCEKLFA-DYLDGHP--------LMSN------------------A-SHL 246 (765)
T ss_pred CCCcEEEEEcCHHHHHhcCCccCCHHHHHHHHHHHhH-HhcCCCc--------cccc------------------c-ccc
Confidence 76665555554332111 122356677777777665 3422100 0000 0 000
Q ss_pred Ccceee-ecccccccccccCC----EEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHh
Q 013000 312 SERMVF-PLSLKHANNYVSKR----VVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAE 386 (451)
Q Consensus 312 ~~~~~~-~~~~~~~~~~~~g~----v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~ 386 (451)
....| ++....+++|..|| |+|+|||||+|+|+.|||+|+||+||..|+++|.... . ..+.+|+.|++.
T Consensus 247 -~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~---~--~~~~al~~ye~~ 320 (765)
T PRK08255 247 -RGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP---G--DLPAALAAYEEE 320 (765)
T ss_pred -ccceeeecceeccCCCccCCCcccEEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc---c--cHHHHHHHHHHH
Confidence 00012 22233468899999 9999999999999999999999999999999998642 1 348999999999
Q ss_pred hchhhHHHHHHHHHHHHhhcCC
Q 013000 387 RKPANIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 387 r~~~~~~~~~~s~~~~~~~~~~ 408 (451)
|++++..+++.++.+..+|...
T Consensus 321 R~~r~~~~~~~s~~~~~~~~~~ 342 (765)
T PRK08255 321 RRVEVLRIQNAARNSTEWFENV 342 (765)
T ss_pred HHHHHHHHHHHHHHhCceeeec
Confidence 9999999999999888877553
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.96 E-value=5.7e-28 Score=235.35 Aligned_cols=297 Identities=17% Similarity=0.102 Sum_probs=177.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.|++ + ++|+||||.+.+...+ ....+|..|+++++++|+++|+..............+
T Consensus 11 paGl~~A~~La~----~-~~V~liE~~~~~~~~~------~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~--- 76 (351)
T PRK11445 11 PAGSALARLLAG----K-MKVIAIDKKHQCGTEG------FSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV--- 76 (351)
T ss_pred HHHHHHHHHHhc----c-CCEEEEECCCcccccc------ccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee---
Confidence 799999999999 6 9999999998653222 1234588999999999999998632111000000000
Q ss_pred eCCCcceeEeecCC-CCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 81 DYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
....+.... .......+.++|..|+++|.+.+ +.+ ++++++++|++++. .++
T Consensus 77 -----~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~-~~g-v~v~~~~~v~~i~~--------------------~~~ 129 (351)
T PRK11445 77 -----KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLI-PAS-VEVYHNSLCRKIWR--------------------EDD 129 (351)
T ss_pred -----eEecccccchhhcCCCcccccHHHHHHHHHHHH-hcC-CEEEcCCEEEEEEE--------------------cCC
Confidence 001111000 01111235799999999999865 444 99999999999976 345
Q ss_pred eeEEEe-CCCc--EEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCCC---eeEEEecCCCcEEEeecC
Q 013000 160 LAKLDL-SDGT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENY---CAWQRFLPAGPIALLPIG 233 (451)
Q Consensus 160 ~v~v~~-~dg~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~p~~ 233 (451)
.+.|++ .+|+ ++++|+||+|||.+|.+|++++....... ..++...+....+.+ ..+..-...++.|.+|.+
T Consensus 130 ~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~W~~p~~ 207 (351)
T PRK11445 130 GYHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRK--YVAIQQWFAEKHPVPFYSCIFDNEITDCYSWSISKD 207 (351)
T ss_pred EEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHhcCCCchhh--EEEEEEEecCCCCCCCcceEEeccCCCceEEEeCCC
Confidence 677776 5675 68999999999999999999976532222 223333333332211 111111246788889875
Q ss_pred CCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhc-cCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecC
Q 013000 234 DNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 312 (451)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
+. ..++...+... ..+ ..+.+...+. .++.. .+.+..
T Consensus 208 ~~-~~~g~~~~~~~-------~~~-~~~~l~~~l~~~~~~~---------~~~~~~------------------------ 245 (351)
T PRK11445 208 GY-FIFGGAYPMKD-------GRE-RFETLKEKLSAFGFQF---------GKPVKT------------------------ 245 (351)
T ss_pred Cc-EEecccccccc-------hHH-HHHHHHHHHHhccccc---------cccccc------------------------
Confidence 53 23322222111 111 1122222111 00000 000000
Q ss_pred cceeeeccccccc--ccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchh
Q 013000 313 ERMVFPLSLKHAN--NYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPA 390 (451)
Q Consensus 313 ~~~~~~~~~~~~~--~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~ 390 (451)
...+++...... .+.++||+|||||||.++|++|+|+++||+||..|++.|.... ...++.|++.++..
T Consensus 246 -~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~~--------~~~~~~y~~~~~~~ 316 (351)
T PRK11445 246 -EACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQP--------EKLNTAYWRKTRKL 316 (351)
T ss_pred -ccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhcc--------cchHHHHHHHHHHH
Confidence 000111111112 2345899999999999999999999999999999999997643 34689999877665
Q ss_pred h
Q 013000 391 N 391 (451)
Q Consensus 391 ~ 391 (451)
.
T Consensus 317 ~ 317 (351)
T PRK11445 317 R 317 (351)
T ss_pred H
Confidence 4
No 51
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=1.5e-27 Score=227.30 Aligned_cols=277 Identities=18% Similarity=0.240 Sum_probs=184.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++ +|++|+||||++.++...| +..+++.+++.|...+. .. ........++
T Consensus 10 ~aGl~~A~~l~~----~g~~v~vie~~~~~~~~~~----------~~~~~~~~~~~l~~~~~--~~----~~~~~~~~~~ 69 (295)
T TIGR02032 10 PAGASAAYRLAD----KGLRVLLLEKKSFPRYKPC----------GGALSPRVLEELDLPLE--LI----VNLVRGARFF 69 (295)
T ss_pred HHHHHHHHHHHH----CCCeEEEEeccCCCCcccc----------cCccCHhHHHHhcCCch--hh----hhheeeEEEE
Confidence 689999999999 4999999999998754444 88889988887766543 11 1122344444
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
...+.. .... .....++.++|..|.+.|.+.+.+.+ ++++++++|++++. .++.
T Consensus 70 ~~~~~~-~~~~----~~~~~~~~i~r~~l~~~l~~~~~~~g-v~~~~~~~v~~~~~--------------------~~~~ 123 (295)
T TIGR02032 70 SPNGDS-VEIP----IETELAYVIDRDAFDEQLAERAQEAG-AELRLGTTVLDVEI--------------------HDDR 123 (295)
T ss_pred cCCCcE-EEec----cCCCcEEEEEHHHHHHHHHHHHHHcC-CEEEeCcEEeeEEE--------------------eCCE
Confidence 444322 2222 11345678999999999999999886 99999999999876 3455
Q ss_pred eEEEeCCC-cEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC--CCeeEEEe-----cCCCcEEEeec
Q 013000 161 AKLDLSDG-TSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE--NYCAWQRF-----LPAGPIALLPI 232 (451)
Q Consensus 161 v~v~~~dg-~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~g~~~~~p~ 232 (451)
+.+.+.++ .++++|+||+|||.+|.+|+.++........ ...+...+..+.. .......+ .+++++|++|+
T Consensus 124 ~~~~~~~~~~~~~a~~vv~a~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 202 (295)
T TIGR02032 124 VVVIVRGGEGTVTAKIVIGADGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPK 202 (295)
T ss_pred EEEEEcCccEEEEeCEEEECCCcchHHHHhcCCCCCCcce-eeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeC
Confidence 66766654 5899999999999999999998765432222 2333444444321 11111112 24688999999
Q ss_pred CCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecC
Q 013000 233 GDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLAS 312 (451)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (451)
+++...+.+...... ...+.++.++.+...++ .+.. . ...+
T Consensus 203 ~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~-~l~~------------~-------------------~~~~--- 243 (295)
T TIGR02032 203 GDGTANVGVGSRSAE----EGEDLKKYLKDFLARRP-ELKD------------A-------------------ETVE--- 243 (295)
T ss_pred CCCeEEEeeeeccCC----CCCCHHHHHHHHHHhCc-cccc------------C-------------------cEEe---
Confidence 988777776655432 22344444444444222 0000 0 0000
Q ss_pred cceeeecccc-cccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHH
Q 013000 313 ERMVFPLSLK-HANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRII 364 (451)
Q Consensus 313 ~~~~~~~~~~-~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L 364 (451)
...+++... ...+|..+||+|+|||||+++|++|||+|+||+||..+|++|
T Consensus 244 -~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 244 -VIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred -eeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 011222221 345778899999999999999999999999999999999875
No 52
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=219.00 Aligned_cols=381 Identities=16% Similarity=0.163 Sum_probs=278.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
.+|.++|+.|+| .|.+|+||||+=.- ++..-|+.++|.+...|.+||+.|.+.....+...+..++
T Consensus 55 V~GsaLa~~L~k----dGRrVhVIERDl~E----------PdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if 120 (509)
T KOG1298|consen 55 VAGSALAYALAK----DGRRVHVIERDLSE----------PDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF 120 (509)
T ss_pred chHHHHHHHHhh----CCcEEEEEeccccc----------chHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEE
Confidence 379999999999 69999999999654 4555699999999999999999999988777788899999
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
.++....+.|+..+...++.|..++.++|.+-|.+.+...++|++..| +|.++.. +++..
T Consensus 121 k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLle-------------------e~gvv 180 (509)
T KOG1298|consen 121 KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLE-------------------EEGVV 180 (509)
T ss_pred eCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHh-------------------ccCeE
Confidence 888777888888888888889999999999999999999999998877 6777643 23344
Q ss_pred eEEEeCC--Cc--EEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEe-ecCCC-CeeEEEecCCCcEEEeecCC
Q 013000 161 AKLDLSD--GT--SLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE-HNKEN-YCAWQRFLPAGPIALLPIGD 234 (451)
Q Consensus 161 v~v~~~d--g~--~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~g~~~~~p~~~ 234 (451)
..|++++ |+ +..|.+-|.|||..|.+||.+..+....- ..+.+..... .+.+. ...+..+.+..++.++|++.
T Consensus 181 kGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V-~S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISS 259 (509)
T KOG1298|consen 181 KGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEV-PSYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISS 259 (509)
T ss_pred EeEEEecCCCceEEEecceEEEecchhHHHHHHhcCCccccc-chheeeeeecCCCCCCCCcceEEecCCCcEEEEEecc
Confidence 4466654 33 67899999999999999999965433311 1111111111 11222 34445567889999999999
Q ss_pred CceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcc
Q 013000 235 NFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASER 314 (451)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (451)
...++..-++...... ...-++..++.+... |+. ++++.+-| .+..++.
T Consensus 260 tEvRcl~~v~g~~~Ps---i~~gem~~~mk~~v~----Pqi------P~~lR~~F------------------~~av~~g 308 (509)
T KOG1298|consen 260 TEVRCLVDVPGQKLPS---IANGEMATYMKESVA----PQI------PEKLRESF------------------LEAVDEG 308 (509)
T ss_pred hheEEEEecCcccCCc---ccchhHHHHHHHhhC----cCC------CHHHHHHH------------------HHHhhcc
Confidence 9999998887653222 223344455554332 110 01111111 1111110
Q ss_pred --eeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhH
Q 013000 315 --MVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANI 392 (451)
Q Consensus 315 --~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~ 392 (451)
...|-...++......+++|+|||..+-+|.+|.||.-|+.|...|-+.|.....-.+.....+.+..|.-.|++...
T Consensus 309 ~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~ 388 (509)
T KOG1298|consen 309 NIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSA 388 (509)
T ss_pred chhcCccccCCCCcCCCCceEEEcccccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhH
Confidence 012222223344446789999999999999999999999999999999997743222222235677889999999999
Q ss_pred HHHHHHHHHHHhhcC-CCchHHHHHHHHHHhhccChhHHHHHHHHhhCCCCCCCCC
Q 013000 393 VMMAVLDGFQKAYSV-DFGPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 447 (451)
Q Consensus 393 ~~~~~s~~~~~~~~~-~~~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~~~~~~ 447 (451)
.+-..+..++++|.. .+-....+|+..|..+++-..-.+-.+..++|+...|+-|
T Consensus 389 tINtLa~Aly~vf~as~dea~~~mr~gCfdYl~~GG~c~sGpv~lLsGlnP~Pl~L 444 (509)
T KOG1298|consen 389 TINTLANALYQVFVASTDEARKAMRKGCFDYLKRGGFCVSGPVALLSGLNPRPLSL 444 (509)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCccccchHHHhcCCCCCchHH
Confidence 999999999999977 6778889999999999988888888999999999888643
No 53
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.95 E-value=1.7e-25 Score=221.27 Aligned_cols=323 Identities=17% Similarity=0.143 Sum_probs=209.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.|++. |++|+|+||.+.++.+.| .+..+.+..++-+......+ + . ..+.+..++
T Consensus 13 PAGs~aA~~la~~----G~~VlvlEk~~~~G~k~~---------~~~~~~~~~l~~l~~~~~~~-i-~---~~v~~~~~~ 74 (396)
T COG0644 13 PAGSSAARRLAKA----GLDVLVLEKGSEPGAKPC---------CGGGLSPRALEELIPDFDEE-I-E---RKVTGARIY 74 (396)
T ss_pred hHHHHHHHHHHHc----CCeEEEEecCCCCCCCcc---------ccceechhhHHHhCCCcchh-h-h---eeeeeeEEE
Confidence 8999999999994 999999999999977665 14777777665544332211 1 1 133444454
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..........+ ...+|.++|..|+++|.+++.+.| ++++.+++++++.. ++++.
T Consensus 75 ~~~~~~~~~~~------~~~~y~v~R~~fd~~La~~A~~aG-ae~~~~~~~~~~~~-------------------~~~~~ 128 (396)
T COG0644 75 FPGEKVAIEVP------VGEGYIVDRAKFDKWLAERAEEAG-AELYPGTRVTGVIR-------------------EDDGV 128 (396)
T ss_pred ecCCceEEecC------CCceEEEEhHHhhHHHHHHHHHcC-CEEEeceEEEEEEE-------------------eCCcE
Confidence 44222222221 145799999999999999999998 89999999999987 23344
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCCCeeEE-----EecCCCcEEEeecCCC
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQ-----RFLPAGPIALLPIGDN 235 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~~~p~~~~ 235 (451)
+.....++.+++|++||+|||++|.++++++...........+..-....+.+...... ...+.|+.|+||..++
T Consensus 129 ~~~~~~~~~e~~a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~ 208 (396)
T COG0644 129 VVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVEEFLYGPLDVGPGGYGWIFPLGDG 208 (396)
T ss_pred EEEEEcCCEEEEcCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCCCceEEEEecCCccCCCceEEEEECCCc
Confidence 44555555789999999999999999999998821111112222223333312222122 2347899999999999
Q ss_pred ceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcce
Q 013000 236 FSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERM 315 (451)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (451)
..++...+.... ....... +.++.+..... ....+.+. ...+... .
T Consensus 209 ~~~VG~g~~~~~--~~~~~~~-~~l~~f~~~~~----------------~~~~~~~~-------------~~~~~~~--~ 254 (396)
T COG0644 209 HANVGIGVLLDD--PSLSPFL-ELLERFKEHPA----------------IRKLLLGG-------------KILEYAA--G 254 (396)
T ss_pred eEEEEEEEecCC--cCCCchH-HHHHHHHhCcc----------------cchhccCC-------------ceEEEee--e
Confidence 888888765554 1111111 33333333110 00000000 0001000 0
Q ss_pred eeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHH
Q 013000 316 VFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMM 395 (451)
Q Consensus 316 ~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~ 395 (451)
..|........+..++++||||||..++|++|+|+..||.+|..+|+.|..+...+ ...|..|++.++.......
T Consensus 255 ~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~ 329 (396)
T COG0644 255 GIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-----EEALAEYERLLRKSLARED 329 (396)
T ss_pred ecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-----hhHHHHHHHHHHHHHHHHH
Confidence 12222222222677899999999999999999999999999999999999987643 5678889999888777766
Q ss_pred HHHHHHHHhhc
Q 013000 396 AVLDGFQKAYS 406 (451)
Q Consensus 396 ~~s~~~~~~~~ 406 (451)
.........+.
T Consensus 330 ~~~~~~~~~~~ 340 (396)
T COG0644 330 LKSLRLLKLLL 340 (396)
T ss_pred HHHhhhhhhHH
Confidence 66655555543
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.95 E-value=2.5e-25 Score=221.61 Aligned_cols=337 Identities=14% Similarity=0.125 Sum_probs=194.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchh-hhhhhcccccEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY-VQQHRHAYFDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~-~~~~~~~~~~~~~~ 79 (451)
|||+++|+.|++ +|++|+||||.+.++.+.+ .|..+....++.+.. ++..+ ..+..+ ....+.+
T Consensus 15 pAG~~aA~~LA~----~G~~VlliEr~~~~g~k~~---------~gg~i~~~~~~~l~~-~~~~~~~i~~~~-~~~~~~~ 79 (429)
T PRK10015 15 VAGSVAALVMAR----AGLDVLVIERGDSAGCKNM---------TGGRLYAHTLEAIIP-GFAASAPVERKV-TREKISF 79 (429)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCCCCCcccc---------cCceeecccHHHHcc-cccccCCccccc-cceeEEE
Confidence 799999999999 4999999999998855432 143444443333210 22211 111111 1223444
Q ss_pred EeCCCcceeEeecCCCCC-ccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 80 WDYTGLGYTKYNARDVNK-EILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
.+.++.....+....... ...+|.+.|..|+++|.+++.+.| ++++.+++|+++.. .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~G-v~i~~~~~V~~i~~--------------------~~ 138 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAG-AQFIPGVRVDALVR--------------------EG 138 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcC-CEEECCcEEEEEEE--------------------eC
Confidence 454443344443222111 224689999999999999999886 99999999999865 23
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCccc-CeEEEEEEeecCCC-----------CeeEEEec--CC
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYS-QNAIICTVEHNKEN-----------YCAWQRFL--PA 224 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~-----------~~~~~~~~--~~ 224 (451)
+.+.+...++.++.||+||+|||.+|.+++.++......... ..++...+..+... ...|..++ .+
T Consensus 139 ~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~ 218 (429)
T PRK10015 139 NKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD 218 (429)
T ss_pred CEEEEEEeCCeEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCC
Confidence 445433345568999999999999999999987643221111 12222222222110 11122111 11
Q ss_pred C---cEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccccccc
Q 013000 225 G---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECF 301 (451)
Q Consensus 225 g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (451)
| ..|+++ +.+..+++..+...... ....+..++++.+... + .++.++...
T Consensus 219 g~~g~G~~~~-~~d~v~vGv~~~~~~~~-~~~~~~~~~l~~~~~~-p----------------~~~~~~~~~-------- 271 (429)
T PRK10015 219 GLMGGGFLYT-NKDSISLGLVCGLGDIA-HAQKSVPQMLEDFKQH-P----------------AIRPLISGG-------- 271 (429)
T ss_pred CCCCceEEEE-cCCcEEEEEEEehhhhc-cCCCCHHHHHHHHhhC-h----------------HHHHHhcCC--------
Confidence 1 223333 33445554433211111 1123455565555320 0 000000000
Q ss_pred CCCcceeeecCcceeeecccc-cccccccCCEEEEcccccccC--CcchhccccchHHHHHHHHHHHHhhhcCCCCChHH
Q 013000 302 EVPPRVVKLASERMVFPLSLK-HANNYVSKRVVLIGDAAHTVH--PLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEAS 378 (451)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~v~LvGDAAh~~~--P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~ 378 (451)
+..+.. -...|.... ..++...+++++|||||+.++ |++|+|+++||.++..+|+.+.+++..+ +. +..
T Consensus 272 ----~~~e~~--~~~ip~gg~~~~~~~~~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~-d~-s~~ 343 (429)
T PRK10015 272 ----KLLEYS--AHMVPEGGLAMVPQLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERA-DF-SAS 343 (429)
T ss_pred ----EEEEEe--eEEcccCCcccCCccccCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcC-CC-ccc
Confidence 000000 001122211 235667899999999999998 5699999999999999999999988754 32 356
Q ss_pred HHHHHHHhhchh-hHHHHHHHHHHHHhhcCC
Q 013000 379 LLKKYEAERKPA-NIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 379 ~l~~Ye~~r~~~-~~~~~~~s~~~~~~~~~~ 408 (451)
.|+.|++.++.. +-+-+...+.+..++..+
T Consensus 344 ~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 344 SLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred cHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 789999998876 444455666666666554
No 55
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.94 E-value=6.7e-24 Score=211.67 Aligned_cols=331 Identities=15% Similarity=0.117 Sum_probs=194.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhh----hcccccE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQH----RHAYFDK 76 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~----~~~~~~~ 76 (451)
|||+++|+.|++ +|++|+||||.+.++.+.+ .|..+....++ .+ ..++... .......
T Consensus 15 pAG~~aA~~La~----~G~~V~llEr~~~~g~k~~---------~gg~l~~~~~e---~l--~~~~~~~~~~~~~~~~~~ 76 (428)
T PRK10157 15 LAGSVAALVLAR----EGAQVLVIERGNSAGAKNV---------TGGRLYAHSLE---HI--IPGFADSAPVERLITHEK 76 (428)
T ss_pred HHHHHHHHHHHh----CCCeEEEEEcCCCCCCccc---------ccceechhhHH---HH--hhhhhhcCcccceeeeee
Confidence 799999999999 5999999999998865432 13344444333 22 1111110 1101123
Q ss_pred EEEEeCCCcceeEeecCC-CCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccc
Q 013000 77 MQVWDYTGLGYTKYNARD-VNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLF 155 (451)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (451)
+.+...++.....+.... ......+|.+.|..|+++|.+.+.+.| ++++.+++|++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~G-v~i~~~~~V~~i~~------------------- 136 (428)
T PRK10157 77 LAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAG-AQLITGIRVDNLVQ------------------- 136 (428)
T ss_pred EEEEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCC-CEEECCCEEEEEEE-------------------
Confidence 344444443333333211 122334688999999999999999887 99999999999875
Q ss_pred cCCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC-------------CeeEEEec
Q 013000 156 TKGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN-------------YCAWQRFL 222 (451)
Q Consensus 156 ~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 222 (451)
.++.+.+...+|.++.||+||+|||.+|.+++.++..... .....++........+. ...+...+
T Consensus 137 -~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~lgl~~~~-~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 214 (428)
T PRK10157 137 -RDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRV-KPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAG 214 (428)
T ss_pred -eCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHcCCCCCC-CCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEE
Confidence 3344544446777899999999999999999999866432 22333333322222111 11222211
Q ss_pred --CCC---cEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccc
Q 013000 223 --PAG---PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 297 (451)
Q Consensus 223 --~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (451)
..| ..|+++ +.+..++.+.+...... ....++.++++.+.. .+ . ....+++ .
T Consensus 215 ~~~~g~~ggG~~~~-~~~~~svG~~~~~~~~~-~~~~~~~~~l~~~~~-~p-----~-------v~~~~~~---~----- 271 (428)
T PRK10157 215 SPTDGLMGGGFLYT-NENTLSLGLVCGLHHLH-DAKKSVPQMLEDFKQ-HP-----A-------VAPLIAG---G----- 271 (428)
T ss_pred CCCCCCcCceeEEE-cCCeEEEEEEEehHHhc-ccCCCHHHHHHHHHh-Cc-----h-------HHHHhCC---C-----
Confidence 111 234444 34455565554332211 112345556555433 00 0 0000110 0
Q ss_pred ccccCCCcceeeecCcce-eeeccc-ccccccccCCEEEEcccccccCC--cchhccccchHHHHHHHHHHHHhhhcCCC
Q 013000 298 KECFEVPPRVVKLASERM-VFPLSL-KHANNYVSKRVVLIGDAAHTVHP--LAGQGVNLGFGDASTLSRIIAEGIAVGAD 373 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~g~v~LvGDAAh~~~P--~~g~G~~~al~da~~La~~L~~~~~~~~~ 373 (451)
...+... ..|... ...++...++++++||||..++| ++|+|++.||.++..+|+++.++++.+ +
T Consensus 272 -----------~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~-~ 339 (428)
T PRK10157 272 -----------KLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSD-D 339 (428)
T ss_pred -----------eEHHHHhhHhhcCCcccCCceecCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 0000000 012111 12345667899999999999998 699999999999999999999988765 3
Q ss_pred CChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcC
Q 013000 374 IGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV 407 (451)
Q Consensus 374 ~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~ 407 (451)
. +...|+.|++..+..+-+-+...+.+..++..
T Consensus 340 ~-s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~ 372 (428)
T PRK10157 340 F-SKQKLAEYRQHLESGPLRDMRMYQKLPAFLDN 372 (428)
T ss_pred c-chhhHHHHHHHHHHhHHHHHHHHhccHHHhcC
Confidence 2 46789999998877654444445445555543
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.90 E-value=3.2e-21 Score=191.06 Aligned_cols=296 Identities=19% Similarity=0.172 Sum_probs=178.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccE-EEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDK-MQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~-~~~ 79 (451)
|||+++|+.|++ +|++|+|||+.+... ......++.. .++.+++. .+... .+.. ..+
T Consensus 9 ~AGl~~A~~la~----~g~~v~liE~~~~~~-----------~~~~~~~~~~---~~~~~~~~-~~~~~---~~~~~~~~ 66 (388)
T TIGR01790 9 PAGLAIALELAR----PGLRVQLIEPHPPIP-----------GNHTYGVWDD---DLSDLGLA-DCVEH---VWPDVYEY 66 (388)
T ss_pred HHHHHHHHHHHh----CCCeEEEEccCCCCC-----------CCccccccHh---hhhhhchh-hHHhh---cCCCceEE
Confidence 689999999999 599999999987541 0112233333 24445532 22221 1222 112
Q ss_pred EeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC
Q 013000 80 WDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH 159 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
....... . .+.....++|..|.+.|.+.+.+.+ ++++ ..+|++++. +.+.
T Consensus 67 ~~~~~~~--~-------~~~~~~~i~~~~l~~~l~~~~~~~g-v~~~-~~~v~~i~~-------------------~~~~ 116 (388)
T TIGR01790 67 RFPKQPR--K-------LGTAYGSVDSTRLHEELLQKCPEGG-VLWL-ERKAIHAEA-------------------DGVA 116 (388)
T ss_pred ecCCcch--h-------cCCceeEEcHHHHHHHHHHHHHhcC-cEEE-ccEEEEEEe-------------------cCCc
Confidence 2111110 0 1122246999999999999998885 8886 558888865 1245
Q ss_pred eeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeec-CC---CCeeEEEec--C--------CC
Q 013000 160 LAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHN-KE---NYCAWQRFL--P--------AG 225 (451)
Q Consensus 160 ~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~--~--------~g 225 (451)
.+.|++.+|.+++|++||+|||.+|.+++......... +......+... .+ ....+..+. + .+
T Consensus 117 ~~~v~~~~g~~~~a~~VI~A~G~~s~~~~~~~~~~~~~---q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 193 (388)
T TIGR01790 117 LSTVYCAGGQRIQARLVIDARGFGPLVQYVRFPLNVGF---QVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYR 193 (388)
T ss_pred eeEEEeCCCCEEEeCEEEECCCCchhcccccCCCCceE---EEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCC
Confidence 67788888989999999999999997754332111111 12222233332 11 111122211 1 12
Q ss_pred --cEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhcc-CCCCCCCCCCCCcccccccccCCcccccccccC
Q 013000 226 --PIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAKECFE 302 (451)
Q Consensus 226 --~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (451)
++|++|++++...+...... .....+.+.+.+.+.+.+.. ++..
T Consensus 194 ~~f~~~lP~~~~~~~v~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~----------------------------- 240 (388)
T TIGR01790 194 PTFLYAMPLGSTRVFIEETSLA----DRPALPRDRLRQRILARLNAQGWQI----------------------------- 240 (388)
T ss_pred CceEEEeecCCCeEEEEecccc----CCCCCCHHHHHHHHHHHHHHcCCee-----------------------------
Confidence 78899998876544321111 11234556666666654430 1100
Q ss_pred CCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q 013000 303 VPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKK 382 (451)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~ 382 (451)
..+. ......+|+.... .+..+|+++||||||.++|.+|+|++.|+++|..||+.|.++++.+ .+.+++.
T Consensus 241 --~~i~--~~~~~~iP~~~~~--~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~~~~~~~----~~~~~~~ 310 (388)
T TIGR01790 241 --KTIE--EEEWGALPVGLPG--PFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIAQALCQS----SELATAA 310 (388)
T ss_pred --eEEE--eeeeEEEecccCC--CccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHHHHhccC----HHHHHHH
Confidence 0001 1112234554432 2367899999999999999999999999999999999999987643 3688999
Q ss_pred HHHhhchhhHHH
Q 013000 383 YEAERKPANIVM 394 (451)
Q Consensus 383 Ye~~r~~~~~~~ 394 (451)
|++.++++..+.
T Consensus 311 ~~~~~~~~~~~~ 322 (388)
T TIGR01790 311 WDGLWPTERRRQ 322 (388)
T ss_pred HHHhchHHHHHH
Confidence 998877766653
No 57
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.89 E-value=9.4e-22 Score=196.58 Aligned_cols=328 Identities=17% Similarity=0.229 Sum_probs=203.3
Q ss_pred CcHHHHHHHhcCCCCCCC---cEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchh--hhhhhccccc
Q 013000 1 MVGMALACSLASMPLTKH---LSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQY--VQQHRHAYFD 75 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g---~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~--~~~~~~~~~~ 75 (451)
+||.++|..|++. + ++|+|||+...|+ .+-|+...|....+++.+|+.+. +.+...+...
T Consensus 9 ~aG~~~A~~L~~~----~~~~~~v~lie~~~~~~-----------~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 9 TAGWMAAAALARA----GPDALSVTLIESPDIPR-----------IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKL 73 (454)
T ss_dssp HHHHHHHHHHHHH----CTCSSEEEEEE-SSS--------------SSEEE--THHHHCHHHHT--HHHHCHHCT-EEES
T ss_pred HHHHHHHHHHHHh----CCCCcEEEEEecCCCCC-----------CCccccchHHHHHHHHHcCCChHHHHHHhCCeEec
Confidence 5899999999995 5 8999999998872 33489999998999999999877 5555443444
Q ss_pred EEEEEe--CCCccee-Eeec-------------------------------------------C--C-CCCccceeeech
Q 013000 76 KMQVWD--YTGLGYT-KYNA-------------------------------------------R--D-VNKEILGCVVEN 106 (451)
Q Consensus 76 ~~~~~~--~~~~~~~-~~~~-------------------------------------------~--~-~~~~~~~~~i~R 106 (451)
++.+.+ ..+.... .|.. . + .....++|.++|
T Consensus 74 g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR 153 (454)
T PF04820_consen 74 GIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDR 153 (454)
T ss_dssp EEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEH
T ss_pred cEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeH
Confidence 555532 1111110 1110 0 0 122346799999
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..|++.|.+.+.+.| |+++.+ +|+++.. + +++....|+.++|.+++||+||+|+|.+|.+
T Consensus 154 ~~fd~~L~~~A~~~G-v~~~~g-~V~~v~~-----------~-------~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 154 AKFDQFLRRHAEERG-VEVIEG-TVVDVEL-----------D-------EDGRITAVRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHHTT--EEEET--EEEEEE-------------------TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHHhcCC-CEEEeC-EEEEEEE-----------c-------CCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence 999999999999997 999988 5887766 1 1223357889999999999999999999998
Q ss_pred hhh-hCCCCCCCcc---cCeEEEEEEeecC-CCCeeEEEecCCCcEEEeecCCCceEEEEEcCccchHHhhcCCHHHHHH
Q 013000 187 REL-AGFKTTGWSY---SQNAIICTVEHNK-ENYCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVK 261 (451)
Q Consensus 187 R~~-l~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (451)
.++ ++........ ...++...++... ..........+.||+|.+|+.++..+ +++..... .++++...
T Consensus 214 ~~~~L~~~~~~~~~~L~~d~av~~~~~~~~~~~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~------~s~~~A~~ 286 (454)
T PF04820_consen 214 ARKALKVGFRDWSDWLPNDRAVAVQVPNEDPPEPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDF------ISDDEAEA 286 (454)
T ss_dssp CCCCT-EEEEEETTTCEEEEEEEEEEE-SSCTTSSEEEEEESSEEEEEEEESSEEEE-EEEEETTT------SHHHHHHH
T ss_pred hHhhhcCCCccccccccccEEEEEecCcCCCCCCceeEEecCCceEEEccCCCcceE-EEEecccc------CCHHHHHH
Confidence 776 3322222111 2234444444443 22333344568999999999998776 44443322 13344444
Q ss_pred HHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeecccccccccccCCEEEEcccccc
Q 013000 262 ILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHT 341 (451)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~ 341 (451)
.+.+.+...-. ..+. ..++.....++...+|+++|||||+.
T Consensus 287 ~l~~~l~~~~~------------------------------~~~~---------~i~~~~g~~~~~~~~n~vavGdAAgF 327 (454)
T PF04820_consen 287 ELLAYLGGSPE------------------------------AEPR---------HIRFRSGRRKQFWGKNCVAVGDAAGF 327 (454)
T ss_dssp HHHHHHTCHCT------------------------------TSCE---------EEE-S-EEESSSEETTEEE-CCCTEE
T ss_pred HHHHhcchhhh------------------------------cchh---------hhcccccchhhcccCCEEEEcchhhc
Confidence 45443320000 0000 11222222445556889999999999
Q ss_pred cCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcC-CCchHHHH
Q 013000 342 VHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSV-DFGPLNIL 415 (451)
Q Consensus 342 ~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 415 (451)
++|+.+.|+.+++..+..|++.|... +. .+.+++.|++........+.......+..... ++++.+..
T Consensus 328 iDPL~StGI~la~~aa~~l~~~l~~~-----~~-~~~~~~~Yn~~~~~~~~~~~~fi~~hY~~~~r~ds~FW~~~ 396 (454)
T PF04820_consen 328 IDPLESTGIHLALSAAEALAEALPDD-----DF-SPAALDRYNRRMRREYERIRDFISLHYQLSRRRDSPFWRAR 396 (454)
T ss_dssp --GGGSHHHHHHHHHHHHHHHTHHCT-----TC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHS-SSHHHHHH
T ss_pred cCccccccHHHHHHHHHHHHHhcccC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCHHHHhc
Confidence 99999999999999888877777642 22 27789999999999999998887777776433 33554333
No 58
>PLN02697 lycopene epsilon cyclase
Probab=99.85 E-value=1.6e-18 Score=174.81 Aligned_cols=307 Identities=17% Similarity=0.155 Sum_probs=188.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+|||+.... . . ..+++. ..++.+|+.+.+.. . +....++
T Consensus 118 PAGLalA~~Lak----~Gl~V~LIe~~~p~----------~-~--n~GvW~---~~l~~lgl~~~i~~-~---w~~~~v~ 173 (529)
T PLN02697 118 PAGLALAAESAK----LGLNVGLIGPDLPF----------T-N--NYGVWE---DEFKDLGLEDCIEH-V---WRDTIVY 173 (529)
T ss_pred HHHHHHHHHHHh----CCCcEEEecCcccC----------C-C--ccccch---hHHHhcCcHHHHHh-h---cCCcEEE
Confidence 799999999999 59999999986322 0 0 123332 35777887554432 2 2223333
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..++... .. ...+ ..++|..|.+.|.+.+.+.| +++ .+++|++++. .++.
T Consensus 174 ~~~~~~~-~~------~~~Y-g~V~R~~L~~~Ll~~a~~~G-V~~-~~~~V~~I~~--------------------~~~~ 223 (529)
T PLN02697 174 LDDDKPI-MI------GRAY-GRVSRTLLHEELLRRCVESG-VSY-LSSKVDRITE--------------------ASDG 223 (529)
T ss_pred ecCCcee-ec------cCcc-cEEcHHHHHHHHHHHHHhcC-CEE-EeeEEEEEEE--------------------cCCc
Confidence 3322111 11 1112 25999999999999998876 888 6779999865 2233
Q ss_pred eE-EEeCCCcEEEeeEEEeecCCCChhhhhhCCCCC-CCcccCeEEEEEEeecC-CC---CeeEEEec------------
Q 013000 161 AK-LDLSDGTSLYAKLVVGADGGKSRVRELAGFKTT-GWSYSQNAIICTVEHNK-EN---YCAWQRFL------------ 222 (451)
Q Consensus 161 v~-v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~-~~---~~~~~~~~------------ 222 (451)
+. +.+.+|.++.|++||+|||.+|. +.++.... .....+..+...++... +. ...+..|.
T Consensus 224 ~~vv~~~dG~~i~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~ 301 (529)
T PLN02697 224 LRLVACEDGRVIPCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEA 301 (529)
T ss_pred EEEEEEcCCcEEECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchheeeccccccccccccccC
Confidence 33 45678889999999999999993 33332211 11223444444444432 11 11111111
Q ss_pred -CCCcEEEeecCCCceEE-EEEc-CccchHHhhcCCHHHHHHHHHHhhcc-CCCCCCCCCCCCcccccccccCCcccccc
Q 013000 223 -PAGPIALLPIGDNFSNI-VWTM-NPKDASDCKSMNEDDFVKILNHALDY-GYGPHPKSISSGSVDMFSWFRGDATLSAK 298 (451)
Q Consensus 223 -~~g~~~~~p~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (451)
..+++|++|++++...+ ..+. ..+ ..+.+.+.+.+.+.+.. ++.. .+++
T Consensus 302 ~~p~FlYvlP~~~~~~~VE~T~l~~~~------~l~~~~l~~~L~~~l~~~Gi~~---------~~i~------------ 354 (529)
T PLN02697 302 EYPTFLYAMPMSSTRVFFEETCLASKD------AMPFDLLKKRLMSRLETMGIRI---------LKTY------------ 354 (529)
T ss_pred CCceEEEEeecCCCeEEEEEeeeccCC------CCCHHHHHHHHHHHHHhCCCCc---------ceEE------------
Confidence 12468899999887766 3322 211 23456666666665541 1110 0011
Q ss_pred cccCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCC-----
Q 013000 299 ECFEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGAD----- 373 (451)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~----- 373 (451)
.++....|+.. ..+.. .++++++||||+.++|.+|.|+..++.+|..+|+.|.++++.+..
T Consensus 355 ------------~~E~g~iPm~g-~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~ 420 (529)
T PLN02697 355 ------------EEEWSYIPVGG-SLPNT-EQKNLAFGAAASMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLG 420 (529)
T ss_pred ------------EEEeeeecCCC-CCccc-CCCeeEeehhhcCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccc
Confidence 11112245533 22333 578999999999999999999999999999999999999986530
Q ss_pred --CChHHHHHHHHHhhchhhHHHHHHHHHHHHh
Q 013000 374 --IGEASLLKKYEAERKPANIVMMAVLDGFQKA 404 (451)
Q Consensus 374 --~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~ 404 (451)
..+..+++.|++.+.....+....-.....+
T Consensus 421 ~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~ 453 (529)
T PLN02697 421 TSNSSNISMQAWNTLWPQERKRQRAFFLFGLAL 453 (529)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 1357889999999888766665554333333
No 59
>PLN02463 lycopene beta cyclase
Probab=99.84 E-value=2.4e-18 Score=171.05 Aligned_cols=275 Identities=20% Similarity=0.170 Sum_probs=168.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|.|||+.+.... +...+++ ...++.+|+.+.+... . ....++
T Consensus 38 pAGLalA~~La~----~Gl~V~liE~~~~~~~-----------p~~~g~w---~~~l~~lgl~~~l~~~-w---~~~~v~ 95 (447)
T PLN02463 38 PAGLAVAQQVSE----AGLSVCCIDPSPLSIW-----------PNNYGVW---VDEFEALGLLDCLDTT-W---PGAVVY 95 (447)
T ss_pred HHHHHHHHHHHH----CCCeEEEeccCccchh-----------ccccchH---HHHHHHCCcHHHHHhh-C---CCcEEE
Confidence 699999999999 5999999999764311 1122222 3467888887766442 2 111222
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..+.... . ...++ ..++|..|.+.|.+++.+.+ ++++ ..+|++++. .++.
T Consensus 96 ~~~~~~~-~------~~~~y-~~V~R~~L~~~Ll~~~~~~G-V~~~-~~~V~~I~~--------------------~~~~ 145 (447)
T PLN02463 96 IDDGKKK-D------LDRPY-GRVNRKKLKSKMLERCIANG-VQFH-QAKVKKVVH--------------------EESK 145 (447)
T ss_pred EeCCCCc-c------ccCcc-eeEEHHHHHHHHHHHHhhcC-CEEE-eeEEEEEEE--------------------cCCe
Confidence 2111110 0 11122 45899999999999998776 8887 468999876 4466
Q ss_pred eEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC-C--Ce-eEE-----Eec---------
Q 013000 161 AKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-N--YC-AWQ-----RFL--------- 222 (451)
Q Consensus 161 v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~-----~~~--------- 222 (451)
+.|++.||.+++||+||+|||.+|.+++.-. ......+.++...++.+.+ . .. .+. +..
T Consensus 146 ~~V~~~dG~~i~A~lVI~AdG~~s~l~~~~~---~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~ 222 (447)
T PLN02463 146 SLVVCDDGVKIQASLVLDATGFSRCLVQYDK---PFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARN 222 (447)
T ss_pred EEEEECCCCEEEcCEEEECcCCCcCccCCCC---CCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhcc
Confidence 8899999999999999999999999875321 1111112233333333211 1 10 000 001
Q ss_pred --CCCcEEEeecCCCceEEEEE---cCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCccccc
Q 013000 223 --PAGPIALLPIGDNFSNIVWT---MNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSA 297 (451)
Q Consensus 223 --~~g~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (451)
-.+++|++|++++...+-.. ..+ ..+.+.+.+.+.+.+. .++-.
T Consensus 223 ~~~p~FlY~~P~~~~~~~vEeT~l~s~~-------~~~~~~lk~~L~~~l~-~~Gi~----------------------- 271 (447)
T PLN02463 223 SKLPTFLYAMPFSSNRIFLEETSLVARP-------GLPMDDIQERMVARLR-HLGIK----------------------- 271 (447)
T ss_pred CCCCceEEEEecCCCeEEEEeeeeecCC-------CCCHHHHHHHHHHHHH-HCCCC-----------------------
Confidence 03578999999887443222 121 2345566666666443 11110
Q ss_pred ccccCCCcceeeecC-cceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCC
Q 013000 298 KECFEVPPRVVKLAS-ERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGA 372 (451)
Q Consensus 298 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~ 372 (451)
..+..+ +....|+... .+ ...+|++++||||..++|.+|.|+..++..|..+|++|..+++.+.
T Consensus 272 ---------~~~i~~~E~~~IPmg~~-~~-~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~ 336 (447)
T PLN02463 272 ---------VKSVEEDEKCVIPMGGP-LP-VIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSR 336 (447)
T ss_pred ---------cceeeeeeeeEeeCCCC-CC-CCCCCEEEecchhcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 001111 1111344322 12 2357999999999999999999999999999999999999988653
No 60
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.84 E-value=3e-20 Score=168.14 Aligned_cols=243 Identities=21% Similarity=0.230 Sum_probs=167.7
Q ss_pred eeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEe--ecCCC-CeeEEEecCCCcEEEeecCCCceEEEEEcCccchH
Q 013000 173 AKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVE--HNKEN-YCAWQRFLPAGPIALLPIGDNFSNIVWTMNPKDAS 249 (451)
Q Consensus 173 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 249 (451)
|.++|.|||..|.+|+.+..... .. ...+.+.+- .+.+. ...+..+++.+++.+++++.+..++...++.+...
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~--~v-~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~P 78 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKP--QV-RSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKLP 78 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCC--ce-eeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCccC
Confidence 78999999999999999973221 11 222222222 22233 44445567889999999999999999888766322
Q ss_pred HhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCcceeeecCcceeeeccccccccccc
Q 013000 250 DCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVVKLASERMVFPLSLKHANNYVS 329 (451)
Q Consensus 250 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (451)
. .+..++.+++.+......++. ..+.+....... .....|.....+.....
T Consensus 79 ~---~~~g~l~~yl~~~v~P~LP~~-------lr~~f~~al~~~-------------------rirsMPn~~lp~~~~~~ 129 (276)
T PF08491_consen 79 S---VSNGELKEYLREVVAPQLPEE-------LRPSFEKALEDG-------------------RIRSMPNSFLPASPNWK 129 (276)
T ss_pred C---ccchHHHHHHHHHHHhhchHH-------HHHHHHHHhccC-------------------CcceecccccCCCCCCC
Confidence 1 223345555544322111110 000011100000 00112332323333345
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHhhchhhHHHHHHHHHHHHhhcCCC
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEAERKPANIVMMAVLDGFQKAYSVDF 409 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~~r~~~~~~~~~~s~~~~~~~~~~~ 409 (451)
.++++||||+++.+|.+|+||+.|+.|+..|++.|...-.-+++....++++.|+.+|++....+...+..++.+|..++
T Consensus 130 ~G~vllGDA~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~ 209 (276)
T PF08491_consen 130 PGVVLLGDAANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADD 209 (276)
T ss_pred CCEEEEehhhcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999999886111112234789999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhccChhHHHHHHHHhhCCCCCCCCC
Q 013000 410 GPLNILRAAAFHGAQYISPLKRNIISYASGEQRLPLPL 447 (451)
Q Consensus 410 ~~~~~~r~~~~~~~~~~p~l~~~~~~~~~g~~~~~~~~ 447 (451)
+.++.+|+..|..+..-+......+..++|+...|..|
T Consensus 210 ~~l~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p~P~~L 247 (276)
T PF08491_consen 210 DYLKALRQGCFKYFQLGGECVSGPVALLSGLNPRPLVL 247 (276)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcchHHHhccCCCCcHHH
Confidence 99999999999999998888999999999999888643
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.78 E-value=3.5e-17 Score=159.97 Aligned_cols=295 Identities=15% Similarity=0.116 Sum_probs=163.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCce---eeecHHHHHHHHHCCCchhhhhhhcccccEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRV---STVTPATISFFKEIGAWQYVQQHRHAYFDKM 77 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g---~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 77 (451)
||||++|..|++. ..|++|+|+|+.+... ..+.++ ..+.+.... .++.+... .+...
T Consensus 9 ~AGl~lA~~L~~~--~~g~~V~lle~~~~~~---------~~~tw~~~~~~~~~~~~~------~~~~~v~~---~W~~~ 68 (370)
T TIGR01789 9 LAGGLIALRLQRA--RPDFRIRVIEAGRTIG---------GNHTWSFFDSDLSDAQHA------WLADLVQT---DWPGY 68 (370)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCCCCCC---------Ccccceecccccchhhhh------hhhhhheE---eCCCC
Confidence 5899999999982 0399999999987441 111111 111111000 11111121 22333
Q ss_pred EEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC
Q 013000 78 QVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK 157 (451)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
.++..+.... + . ...+.++|.+|.+.|.+.+. ..++.+++|+++..
T Consensus 69 ~v~~~~~~~~--l-----~--~~Y~~I~r~~f~~~l~~~l~----~~i~~~~~V~~v~~--------------------- 114 (370)
T TIGR01789 69 EVRFPKYRRK--L-----K--TAYRSMTSTRFHEGLLQAFP----EGVILGRKAVGLDA--------------------- 114 (370)
T ss_pred EEECcchhhh--c-----C--CCceEEEHHHHHHHHHHhhc----ccEEecCEEEEEeC---------------------
Confidence 3333221111 1 1 22268999999999988774 23777999998832
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCCC----CeeE-EEec-CCC--cEEE
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKEN----YCAW-QRFL-PAG--PIAL 229 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~-~~g--~~~~ 229 (451)
..|++ .||.++.||+||+|||.+|.-.... .-+..+...++...++ ...+ ..+. .++ ++++
T Consensus 115 -~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~~--------~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~ 183 (370)
T TIGR01789 115 -DGVDL--APGTRINARSVIDCRGFKPSAHLKG--------GFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYV 183 (370)
T ss_pred -CEEEE--CCCCEEEeeEEEECCCCCCCccccc--------eeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEE
Confidence 44555 7899999999999999998622111 1122222233333222 1221 1121 233 3455
Q ss_pred eecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhc-cCCCCCCCCCCCCcccccccccCCcccccccccCCCccee
Q 013000 230 LPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALD-YGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 308 (451)
Q Consensus 230 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (451)
+|++++...+-.... +.....+.+.+.+.+..... .+|... .+.
T Consensus 184 lP~~~~~~lvE~T~~----s~~~~l~~~~l~~~l~~~~~~~g~~~~-------------------------------~i~ 228 (370)
T TIGR01789 184 LPLGSHDLLIEDTYY----ADDPLLDRNALSQRIDQYARANGWQNG-------------------------------TPV 228 (370)
T ss_pred CcCCCCeEEEEEEec----cCCCCCCHHHHHHHHHHHHHHhCCCce-------------------------------EEE
Confidence 788887754422111 11123456777666665432 011100 011
Q ss_pred eecCcceeeecccc-c-ccccc-cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChHHHHHHHHH
Q 013000 309 KLASERMVFPLSLK-H-ANNYV-SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEASLLKKYEA 385 (451)
Q Consensus 309 ~~~~~~~~~~~~~~-~-~~~~~-~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~~~l~~Ye~ 385 (451)
. .+ ...+|+... . ...|. .++|+++|||||.++|.+|+|++.+++||..|++.+... +.+ ...++..|..
T Consensus 229 ~-~e-~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~~~~~---~~~--~~~~~~~~~~ 301 (370)
T TIGR01789 229 R-HE-QGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQPDLS---SEQ--LAAFIDSRAR 301 (370)
T ss_pred E-ee-eeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhccCcC---ccc--hhhhhhHHHH
Confidence 1 11 123565442 1 11233 456999999999999999999999999999999988511 112 2456788998
Q ss_pred hhchhhHHHHHHHHHHH
Q 013000 386 ERKPANIVMMAVLDGFQ 402 (451)
Q Consensus 386 ~r~~~~~~~~~~s~~~~ 402 (451)
.|.++.....-.-+.+.
T Consensus 302 ~~~~~~~~~~~~~~~ll 318 (370)
T TIGR01789 302 RHWSKTGYYRLLNRMLF 318 (370)
T ss_pred HHHHHhHHHHHHHHHHh
Confidence 88777775554444443
No 62
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.70 E-value=7.7e-15 Score=144.08 Aligned_cols=270 Identities=22% Similarity=0.244 Sum_probs=164.1
Q ss_pred CcHHHHHHHh--cCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEE
Q 013000 1 MVGMALACSL--ASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L--~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~ 78 (451)
||||++|..| ++ .|.+|+|||+++...... . +....+.. .++.++++.... +....
T Consensus 9 pAGlslA~~l~~~~----~g~~Vllid~~~~~~~~~-------~--~tW~~~~~------~~~~~~~~v~~~---w~~~~ 66 (374)
T PF05834_consen 9 PAGLSLARRLADAR----PGLSVLLIDPKPKPPWPN-------D--RTWCFWEK------DLGPLDSLVSHR---WSGWR 66 (374)
T ss_pred HHHHHHHHHHHhcC----CCCEEEEEcCCccccccC-------C--cccccccc------cccchHHHHhee---cCceE
Confidence 6999999999 66 599999999987652111 0 11111111 111133333332 34445
Q ss_pred EEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 79 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
++..+...... .....+|+|.+|++.|.+.+. .+ ..++.+.+|++++. .+
T Consensus 67 v~~~~~~~~~~--------~~~Y~~i~~~~f~~~l~~~~~-~~-~~~~~~~~V~~i~~--------------------~~ 116 (374)
T PF05834_consen 67 VYFPDGSRILI--------DYPYCMIDRADFYEFLLERAA-AG-GVIRLNARVTSIEE--------------------TG 116 (374)
T ss_pred EEeCCCceEEc--------ccceEEEEHHHHHHHHHHHhh-hC-CeEEEccEEEEEEe--------------------cC
Confidence 55444322111 122357999999999999999 44 35677889999976 44
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhhCCCCCCCcccCeEEEEEEeecCC-C----CeeEEE-e----cCCCcEE
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELAGFKTTGWSYSQNAIICTVEHNKE-N----YCAWQR-F----LPAGPIA 228 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~-~----~~~g~~~ 228 (451)
..+.|.+.||.+++|++||+|+|..|...+..+ .++.+...++.+.+ . ..++.. . ....++|
T Consensus 117 ~~~~v~~~~g~~i~a~~VvDa~g~~~~~~~~~~--------~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y 188 (374)
T PF05834_consen 117 DGVLVVLADGRTIRARVVVDARGPSSPKARPLG--------LQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLY 188 (374)
T ss_pred ceEEEEECCCCEEEeeEEEECCCcccccccccc--------cceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEE
Confidence 568888999999999999999997777222211 23444444444433 1 121111 1 2335688
Q ss_pred EeecCCCceEEEEEcCccchHHhhcCCHHHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccccCCCccee
Q 013000 229 LLPIGDNFSNIVWTMNPKDASDCKSMNEDDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKECFEVPPRVV 308 (451)
Q Consensus 229 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (451)
++|+++++..+-..+.... ...+.+.+.+.+...+.. .+-. ..++.
T Consensus 189 ~lP~~~~~alvE~T~fs~~----~~~~~~~~~~~l~~~l~~-~g~~-------~~~i~---------------------- 234 (374)
T PF05834_consen 189 VLPFSEDRALVEETSFSPR----PALPEEELKARLRRYLER-LGID-------DYEIL---------------------- 234 (374)
T ss_pred EEEcCCCeEEEEEEEEcCC----CCCCHHHHHHHHHHHHHH-cCCC-------ceeEE----------------------
Confidence 8999988866532222111 124566777777765541 1110 00111
Q ss_pred eecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 309 KLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
.++....|+......+-..++++.+|+|++.++|.+|.++..++..|..+|+.|..
T Consensus 235 --~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 235 --EEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred --EeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 11222356643333333456799999999999999999999999999999988876
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.97 E-value=7.1e-09 Score=96.04 Aligned_cols=134 Identities=18% Similarity=0.172 Sum_probs=89.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+|+||.+.+...-+. .........+.......|+++|+. +.
T Consensus 35 pAGl~AA~~la~----~G~~V~liEk~~~~Ggg~~~---gg~~~~~~~v~~~~~~~l~~~gv~----------~~----- 92 (257)
T PRK04176 35 PSGLTAAYYLAK----AGLKVAVFERKLSFGGGMWG---GGMLFNKIVVQEEADEILDEFGIR----------YK----- 92 (257)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCCCCCCcccc---CccccccccchHHHHHHHHHCCCC----------ce-----
Confidence 689999999999 59999999999877321110 000000123444555666666542 00
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC-C
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-H 159 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 159 (451)
. .. ...+.+++..|...|.+.+.+.+ ++++++++|+++..+ ++ .
T Consensus 93 ~--------~~-------~g~~~vd~~~l~~~L~~~A~~~G-v~I~~~t~V~dl~~~-------------------~~g~ 137 (257)
T PRK04176 93 E--------VE-------DGLYVADSVEAAAKLAAAAIDAG-AKIFNGVSVEDVILR-------------------EDPR 137 (257)
T ss_pred e--------ec-------CcceeccHHHHHHHHHHHHHHcC-CEEEcCceeceeeEe-------------------CCCc
Confidence 0 00 01256789999999999999986 999999999998751 11 1
Q ss_pred eeEEEeC-----------CCcEEEeeEEEeecCCCChhhhhhC
Q 013000 160 LAKLDLS-----------DGTSLYAKLVVGADGGKSRVRELAG 191 (451)
Q Consensus 160 ~v~v~~~-----------dg~~~~adlvVgADG~~S~vR~~l~ 191 (451)
...+... |..+++|++||.|+|.+|.+.+.+.
T Consensus 138 V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 138 VAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHH
Confidence 2222211 2347999999999999999998883
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.96 E-value=1e-08 Score=94.74 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=87.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
||||++|+.|++ +|++|+|+||...+....+. .........+.....+.|+.+|+. +
T Consensus 31 pAGL~aA~~la~----~G~~V~vlEk~~~~Ggg~~~---gg~~~~~~~~~~~~~~~l~~~gi~---------------~- 87 (254)
T TIGR00292 31 PSGLTAAYYLAK----NGLKVCVLERSLAFGGGSWG---GGMLFSKIVVEKPAHEILDEFGIR---------------Y- 87 (254)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCCCccccC---CCcceecccccchHHHHHHHCCCC---------------e-
Confidence 689999999999 49999999999887322220 000000112333344455554431 0
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC--
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-- 158 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 158 (451)
.. .....+..++..+.+.|++++.+.| ++++++++|.++..+ ++
T Consensus 88 ~~--------------~~~g~~~~~~~el~~~L~~~a~e~G-V~I~~~t~V~dli~~-------------------~~~~ 133 (254)
T TIGR00292 88 ED--------------EGDGYVVADSAEFISTLASKALQAG-AKIFNGTSVEDLITR-------------------DDTV 133 (254)
T ss_pred ee--------------ccCceEEeeHHHHHHHHHHHHHHcC-CEEECCcEEEEEEEe-------------------CCCC
Confidence 00 0011245688999999999999997 999999999998761 11
Q ss_pred CeeEEEeC-----------CCcEEEeeEEEeecCCCChhhhhh
Q 013000 159 HLAKLDLS-----------DGTSLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 159 ~~v~v~~~-----------dg~~~~adlvVgADG~~S~vR~~l 190 (451)
....|... |..+++|++||+|+|..|.+.+.+
T Consensus 134 ~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 134 GVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred ceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 12223222 234799999999999999998877
No 65
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.79 E-value=6.5e-07 Score=84.68 Aligned_cols=357 Identities=14% Similarity=0.097 Sum_probs=184.3
Q ss_pred CcHHHHHHHhcCCCC--CCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccc--cE
Q 013000 1 MVGMALACSLASMPL--TKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYF--DK 76 (451)
Q Consensus 1 paGl~lA~~L~~~~~--~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~--~~ 76 (451)
||||++|+.|.|.-. ++.++|.|+||...+. .....|-.|.|.++.-|- --|.+..+.-.+++ +.
T Consensus 86 PAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G---------ghtlSGaviep~aldEL~--P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 86 PAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG---------GHTLSGAVIEPGALDELL--PDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred chhHHHHHHHHHHHHhcCCceEEEEEeeccccC---------CceecceeeccchhhhhC--cchhhcCCcccccccccc
Confidence 799999999965321 2568999999999872 112234556666543221 11222222112222 33
Q ss_pred EEEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCcccccc
Q 013000 77 MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFT 156 (451)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (451)
+.|........+.......+.. -|.++=..|.++|-+++.+.| |+|..+.-+.++..+.+.++.++.-.+-+ ..
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhG--NYvv~L~~~v~wLg~kAEe~G-vEiyPg~aaSevly~edgsVkGiaT~D~G---I~ 228 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHG--NYVVSLGQLVRWLGEKAEELG-VEIYPGFAASEVLYDEDGSVKGIATNDVG---IS 228 (621)
T ss_pred eeeeccCceeecCCCcccccCC--cEEEEHHHHHHHHHHHHHhhC-ceeccccchhheeEcCCCcEeeEeecccc---cc
Confidence 4343433322222111111222 278888999999999999998 99999998888877544444443222111 11
Q ss_pred CCCeeEEEeCCCcEEEeeEEEeecCCCChhhhhh----CCC--CCCCcccCeEEEEEEeecCCC---CeeEEEec----C
Q 013000 157 KGHLAKLDLSDGTSLYAKLVVGADGGKSRVRELA----GFK--TTGWSYSQNAIICTVEHNKEN---YCAWQRFL----P 223 (451)
Q Consensus 157 ~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l----~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~ 223 (451)
+++...=+|+-|-+++|++-|-|.|.|..+.+++ .+. .....|+.- +.-.-++++.. ....+..+ .
T Consensus 229 k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglG-lKEvWei~~~~~~pG~v~HT~GwPl~~ 307 (621)
T KOG2415|consen 229 KDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLG-LKEVWEIDPENHNPGEVAHTLGWPLDN 307 (621)
T ss_pred CCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccc-cceeEecChhhcCCcceeeeccCcccC
Confidence 2333444556666899999999999999888776 222 122222111 11111222111 11111111 1
Q ss_pred --CCcEEEeecCCCceEEEEEcCccchHHhhcCCH-HHHHHHHHHhhccCCCCCCCCCCCCcccccccccCCcccccccc
Q 013000 224 --AGPIALLPIGDNFSNIVWTMNPKDASDCKSMNE-DDFVKILNHALDYGYGPHPKSISSGSVDMFSWFRGDATLSAKEC 300 (451)
Q Consensus 224 --~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (451)
-|-..++-++++...+.+.+-.+=.+ ...++ .+|.+.- . +|. +..-+.+...+
T Consensus 308 ~tYGGsFlYh~~d~~VavGlVVgLdY~N--P~lsP~~EFQk~K-~------hP~----------i~~vleGgk~i----- 363 (621)
T KOG2415|consen 308 DTYGGSFLYHFNDPLVAVGLVVGLDYKN--PYLSPYKEFQKMK-H------HPS----------ISKVLEGGKRI----- 363 (621)
T ss_pred CccCceeEEEcCCCeEEEEEEEEecCCC--CCCCHHHHHHHhh-c------Ccc----------hhhhhcCccee-----
Confidence 12234556677777776665322110 01121 2222211 1 110 11111111000
Q ss_pred cCCCcceeeecCcceeeecccccccccccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCCChH-HH
Q 013000 301 FEVPPRVVKLASERMVFPLSLKHANNYVSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADIGEA-SL 379 (451)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~~~~-~~ 379 (451)
.-- ...+.+ -.++. .+...-.+=+|||=+|..|+=---.|..+||.++..+|+.|-.+++...+.... .-
T Consensus 364 -~Yg--ARaLNE----GGfQs--iPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~ 434 (621)
T KOG2415|consen 364 -AYG--ARALNE----GGFQS--IPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLD 434 (621)
T ss_pred -eeh--hhhhcc----CCccc--CcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccC
Confidence 000 000000 00011 122333456899999999999899999999999999999998888654211000 11
Q ss_pred HHHHHHhhch-hhHHHHHHHHHHHHhhcCC
Q 013000 380 LKKYEAERKP-ANIVMMAVLDGFQKAYSVD 408 (451)
Q Consensus 380 l~~Ye~~r~~-~~~~~~~~s~~~~~~~~~~ 408 (451)
+..|++.-+. .+.+-....|+..-.|+..
T Consensus 435 ~~~Ye~nlkds~V~KeLysvRNirPsf~~~ 464 (621)
T KOG2415|consen 435 PTTYEENLKDSYVWKELYSVRNIRPSFHGK 464 (621)
T ss_pred hhhHHHhhhhhHHHHHHHHhhccCcccccc
Confidence 4578765443 4444455566666666544
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.63 E-value=1.5e-07 Score=89.34 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeee--cHHHHHHHHHCCCchhhhhhh---ccccc
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV--TPATISFFKEIGAWQYVQQHR---HAYFD 75 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l--~~~~~~~L~~lgl~~~~~~~~---~~~~~ 75 (451)
||||++|..++++ |.+|+|||+.+.+..|-- ...+...++ ....-+.|.+.+--..+.... +++.+
T Consensus 13 pAGlMaA~~aa~~----G~~V~lid~~~k~GrKil-----~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 13 PAGLMAAISAAKA----GRRVLLIDKGPKLGRKIL-----MSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred HHHHHHHHHHhhc----CCEEEEEecCccccceeE-----ecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 6999999999994 999999999998854321 111111111 111233444443111221111 11112
Q ss_pred EEEEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccc
Q 013000 76 KMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLF 155 (451)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (451)
-+.++...+.....- . ....+...-.-..+.++|+.++.+.+ |+|+.+++|.+++.
T Consensus 84 ~i~~~e~~Gi~~~e~---~-~Gr~Fp~sdkA~~Iv~~ll~~~~~~g-V~i~~~~~v~~v~~------------------- 139 (408)
T COG2081 84 FIDWVEGLGIALKEE---D-LGRMFPDSDKASPIVDALLKELEALG-VTIRTRSRVSSVEK------------------- 139 (408)
T ss_pred HHHHHHhcCCeeEEc---c-CceecCCccchHHHHHHHHHHHHHcC-cEEEecceEEeEEe-------------------
Confidence 122222222111110 0 11111122345789999999999997 99999999999987
Q ss_pred cCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 156 TKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 156 ~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
.+....|...+|++++||-||-|.|..|.
T Consensus 140 -~~~~f~l~t~~g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 140 -DDSGFRLDTSSGETVKCDSLILATGGKSW 168 (408)
T ss_pred -cCceEEEEcCCCCEEEccEEEEecCCcCC
Confidence 44678899999999999999999997664
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1e-06 Score=76.64 Aligned_cols=136 Identities=18% Similarity=0.117 Sum_probs=94.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++. |++|+||||+-.+....|. .---.-.+.+...+.++|+.+|+.=+-
T Consensus 40 PsGLtAAyyLAk~----g~kV~i~E~~ls~GGG~w~---GGmlf~~iVv~~~a~~iL~e~gI~ye~-------------- 98 (262)
T COG1635 40 PSGLTAAYYLAKA----GLKVAIFERKLSFGGGIWG---GGMLFNKIVVREEADEILDEFGIRYEE-------------- 98 (262)
T ss_pred cchHHHHHHHHhC----CceEEEEEeecccCCcccc---cccccceeeecchHHHHHHHhCCccee--------------
Confidence 8999999999994 9999999999988443330 001111255666677888887651000
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
.....|..+-..+..-|..++.+.| ++|..+..|.++...+.. .-.+
T Consensus 99 ----------------~e~g~~v~ds~e~~skl~~~a~~aG-aki~n~~~veDvi~r~~~----------------rVaG 145 (262)
T COG1635 99 ----------------EEDGYYVADSAEFASKLAARALDAG-AKIFNGVSVEDVIVRDDP----------------RVAG 145 (262)
T ss_pred ----------------cCCceEEecHHHHHHHHHHHHHhcC-ceeeecceEEEEEEecCC----------------ceEE
Confidence 0011256777889999999999998 999999999998761110 0112
Q ss_pred eEEE---------eCCCcEEEeeEEEeecCCCChhhhhh
Q 013000 161 AKLD---------LSDGTSLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 161 v~v~---------~~dg~~~~adlvVgADG~~S~vR~~l 190 (451)
+.++ +-|.-++++++||+|.|.-..|-+.+
T Consensus 146 vVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 146 VVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred EEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 2222 13556899999999999988887766
No 68
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.58 E-value=1.4e-05 Score=78.91 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=55.7
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++-..+.+.|.+.+++.+ ++++++++|++++. +++.+.|...+| ++.+|.||.|.|.
T Consensus 141 ~i~p~~~~~~l~~~~~~~g-~~~~~~~~V~~i~~--------------------~~~~~~v~~~~~-~i~a~~vV~aaG~ 198 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHG-ATVRDGTKVVEIEP--------------------TELLVTVKTTKG-SYQANKLVVTAGA 198 (380)
T ss_pred EEcHHHHHHHHHHHHHHcC-CEEECCCeEEEEEe--------------------cCCeEEEEeCCC-EEEeCEEEEecCc
Confidence 4667788999999988886 89999999999975 345677777666 6899988888887
Q ss_pred C-ChhhhhhCCCCC
Q 013000 183 K-SRVRELAGFKTT 195 (451)
Q Consensus 183 ~-S~vR~~l~~~~~ 195 (451)
+ |.+++.++....
T Consensus 199 ~~~~l~~~~g~~~~ 212 (380)
T TIGR01377 199 WTSKLLSPLGIEIP 212 (380)
T ss_pred chHHHhhhcccCCC
Confidence 5 668888775543
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.54 E-value=3.5e-06 Score=82.17 Aligned_cols=71 Identities=27% Similarity=0.290 Sum_probs=56.9
Q ss_pred eeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeE-EEeCCCcEEEeeEEEee
Q 013000 101 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDGTSLYAKLVVGA 179 (451)
Q Consensus 101 ~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~dg~~~~adlvVgA 179 (451)
+..++-..|.+.|.+.+++.| ++|+.+++|+++.. .++.+. |...+|+ +.+|.||-|
T Consensus 141 ~g~i~~~~l~~~l~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 141 GGVIDPRRLIQALAAEAQRAG-VEIRTGTEVTSIDV--------------------DGGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEEEEHHHHHHHHHHHHHHTT--EEEESEEEEEEEE--------------------ETTEEEEEEETTEE-EEECEEEE-
T ss_pred cccccccchhhhhHHHHHHhh-hhccccccccchhh--------------------cccccccccccccc-cccceeEec
Confidence 456888999999999999997 99999999999987 556677 9999998 999999999
Q ss_pred cCCCChh-hhhhCCC
Q 013000 180 DGGKSRV-RELAGFK 193 (451)
Q Consensus 180 DG~~S~v-R~~l~~~ 193 (451)
.|.+|.- .+.++..
T Consensus 199 ~G~~s~~l~~~~~~~ 213 (358)
T PF01266_consen 199 AGAWSPQLLPLLGLD 213 (358)
T ss_dssp -GGGHHHHHHTTTTS
T ss_pred ccccceeeeeccccc
Confidence 9998864 4444443
No 70
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.53 E-value=5.6e-07 Score=78.70 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=85.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++. |++|+||||+..+...-|. ......-+.++..+..+|+++|+. +.
T Consensus 27 paGl~aA~~La~~----g~kV~v~E~~~~~GGg~~~---Gg~lf~~iVVq~~a~~iL~elgi~----------y~----- 84 (230)
T PF01946_consen 27 PAGLTAAYYLAKA----GLKVAVIERKLSPGGGMWG---GGMLFNKIVVQEEADEILDELGIP----------YE----- 84 (230)
T ss_dssp HHHHHHHHHHHHH----TS-EEEEESSSS-BTTTTS----CTT---EEEETTTHHHHHHHT-------------E-----
T ss_pred hhHHHHHHHHHHC----CCeEEEEecCCCCCccccc---cccccchhhhhhhHHHHHHhCCce----------eE-----
Confidence 6899999999994 9999999999988543331 111112366777888888887651 10
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
+ .....|..+-..+-..|..++.+.| ++|.....|+++... ++ . .-.+
T Consensus 85 ~---------------~~~g~~v~d~~~~~s~L~s~a~~aG-akifn~~~vEDvi~r---------~~--~-----rV~G 132 (230)
T PF01946_consen 85 E---------------YGDGYYVADSVEFTSTLASKAIDAG-AKIFNLTSVEDVIVR---------ED--D-----RVAG 132 (230)
T ss_dssp E----------------SSEEEES-HHHHHHHHHHHHHTTT-EEEEETEEEEEEEEE---------CS--C-----EEEE
T ss_pred E---------------eCCeEEEEcHHHHHHHHHHHHhcCC-CEEEeeeeeeeeEEE---------cC--C-----eEEE
Confidence 0 0112266788899999999998876 999999999998761 00 0 1122
Q ss_pred eEEEe---------CCCcEEEeeEEEeecCCCChhhhhh
Q 013000 161 AKLDL---------SDGTSLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 161 v~v~~---------~dg~~~~adlvVgADG~~S~vR~~l 190 (451)
+.++- -|.-++++++||+|+|.-+.|-+.+
T Consensus 133 vViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 133 VVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp EEEEEHHHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred EEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 22321 2445899999999999988765443
No 71
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.36 E-value=1.8e-05 Score=78.64 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=57.5
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
..++...+.+.|.+.+++.| ++++++++|++++. .++.+.|...+| ++.+|.||.|+|
T Consensus 144 g~vd~~~l~~aL~~~~~~~G-v~i~~~~~V~~i~~--------------------~~~~~~V~~~~g-~i~ad~vV~A~G 201 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARG-GEIRLGAEVTALDE--------------------HANGVVVRTTQG-EYEARTLINCAG 201 (393)
T ss_pred eEECHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCC-EEEeCEEEECCC
Confidence 35678999999999999887 89999999999875 334567777776 699999999999
Q ss_pred CCCh-hhhhhCCC
Q 013000 182 GKSR-VRELAGFK 193 (451)
Q Consensus 182 ~~S~-vR~~l~~~ 193 (451)
.+|. +.+.++.+
T Consensus 202 ~~s~~l~~~~g~~ 214 (393)
T PRK11728 202 LMSDRLAKMAGLE 214 (393)
T ss_pred cchHHHHHHhCCC
Confidence 9994 67777654
No 72
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.30 E-value=4.8e-06 Score=82.66 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC-
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS- 184 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S- 184 (451)
...+.+.|.+.+.+.+ ++++++++|++++. .+..+.|.. ++.++.+|.||.|+|.+|
T Consensus 104 a~~v~~~L~~~l~~~g-v~i~~~~~V~~i~~--------------------~~~~~~v~~-~~~~i~ad~VIlAtG~~s~ 161 (400)
T TIGR00275 104 AADVLDALLNELKELG-VEILTNSKVKSIKK--------------------DDNGFGVET-SGGEYEADKVILATGGLSY 161 (400)
T ss_pred HHHHHHHHHHHHHHCC-CEEEeCCEEEEEEe--------------------cCCeEEEEE-CCcEEEcCEEEECCCCccc
Confidence 4788889999998886 99999999999965 334566666 566899999999999988
Q ss_pred ----------hhhhhhCCC
Q 013000 185 ----------RVRELAGFK 193 (451)
Q Consensus 185 ----------~vR~~l~~~ 193 (451)
.+.+.+|..
T Consensus 162 p~~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 162 PQLGSTGDGYEIAESLGHT 180 (400)
T ss_pred CCCCCCcHHHHHHHHCCCC
Confidence 456666654
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.27 E-value=0.00012 Score=73.05 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-----cEEEeeEEEee
Q 013000 105 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGA 179 (451)
Q Consensus 105 ~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-----~~~~adlvVgA 179 (451)
+=..+.+.|.+.+++.| ++++++++|++++. .++.+.+...++ .++++|.||.|
T Consensus 195 ~~~~~~~~l~~~a~~~G-~~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~~~i~a~~vV~a 253 (410)
T PRK12409 195 DIHKFTTGLAAACARLG-VQFRYGQEVTSIKT--------------------DGGGVVLTVQPSAEHPSRTLEFDGVVVC 253 (410)
T ss_pred CHHHHHHHHHHHHHhCC-CEEEcCCEEEEEEE--------------------eCCEEEEEEEcCCCCccceEecCEEEEC
Confidence 33577888899998887 99999999999975 345566654433 37899999999
Q ss_pred cCCCCh-hhhhhCC
Q 013000 180 DGGKSR-VRELAGF 192 (451)
Q Consensus 180 DG~~S~-vR~~l~~ 192 (451)
.|.+|. +.+.++.
T Consensus 254 ~G~~s~~l~~~~~~ 267 (410)
T PRK12409 254 AGVGSRALAAMLGD 267 (410)
T ss_pred CCcChHHHHHHhCC
Confidence 999985 4444543
No 74
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.25 E-value=4e-05 Score=81.34 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=52.3
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++-..+.+.|.+.+.+ | ++++++++|++++. .++.+.|...+|..+.+|.||.|+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~-G-v~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~ad~VV~A~G~ 461 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-Q-LTIHFGHEVARLER--------------------EDDGWQLDFAGGTLASAPVVVLANGH 461 (662)
T ss_pred eeCHHHHHHHHHHhccc-C-cEEEeCCEeeEEEE--------------------eCCEEEEEECCCcEEECCEEEECCCC
Confidence 36778999999999988 6 89999999999976 34567788888888899999999999
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
+|.
T Consensus 462 ~s~ 464 (662)
T PRK01747 462 DAA 464 (662)
T ss_pred Ccc
Confidence 985
No 75
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.24 E-value=0.00021 Score=70.40 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=48.6
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
++-..+...+.+.+.+.+ ++++.+++|++++. .++.+.|...+| ++.+|.||.|+|.+
T Consensus 146 v~p~~~~~~~~~~~~~~g-v~i~~~~~v~~i~~--------------------~~~~~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 146 LRPELAIKAHLRLAREAG-AELLFNEPVTAIEA--------------------DGDGVTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred EcHHHHHHHHHHHHHHCC-CEEECCCEEEEEEe--------------------eCCeEEEEeCCC-EEEeeEEEEecCcc
Confidence 555677777777787776 89999999999976 345677887777 68999999999998
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
+.
T Consensus 204 ~~ 205 (376)
T PRK11259 204 VK 205 (376)
T ss_pred hh
Confidence 65
No 76
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.19 E-value=5.2e-07 Score=88.98 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=74.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCC-------CCC-CCCCCCCCceeeec------HHHHHHHHHCCCch--
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKS-------NFI-KKEDPPDPRVSTVT------PATISFFKEIGAWQ-- 64 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~-------~~~-~~~~~~~~~g~~l~------~~~~~~L~~lgl~~-- 64 (451)
||||++|+.|++ +|.+|+|+||++.+..+ .|+ .+. .......+. .-...+|++++..+
T Consensus 10 aAGl~aA~~aa~----~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~--~~~~~~~~~~~~~~~~f~~~~l~~f~~~d~~ 83 (409)
T PF03486_consen 10 AAGLMAAITAAE----KGARVLVLERNKRVGKKILITGNGRCNLTNL--NIDPSEFLSGYGRNPKFLKSALKRFSPEDLI 83 (409)
T ss_dssp HHHHHHHHHHHH----TT--EEEE-SSSSS-HHHHHCGGGT-EEEET--TSSGGGEECS-TBTTTCTHHHHHHS-HHHHH
T ss_pred HHHHHHHHHHHh----CCCCEEEEeCCcccccceeecCCCCcccccc--ccchhhHhhhcccchHHHHHHHhcCCHHHHH
Confidence 689999999999 59999999999988532 132 110 000001111 11233455554211
Q ss_pred -hhhhhhcccccEEEEE-eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCC
Q 013000 65 -YVQQHRHAYFDKMQVW-DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSS 142 (451)
Q Consensus 65 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~ 142 (451)
-+.+.+. ... ..+ ...+...-.-.++.++|.+.+.+.+ |+|+++++|.+++.
T Consensus 84 ~ff~~~Gv------~~~~~~~-------------gr~fP~s~~a~~Vv~~L~~~l~~~g-v~i~~~~~V~~i~~------ 137 (409)
T PF03486_consen 84 AFFEELGV------PTKIEED-------------GRVFPKSDKASSVVDALLEELKRLG-VEIHFNTRVKSIEK------ 137 (409)
T ss_dssp HHHHHTT--------EEE-ST-------------TEEEETT--HHHHHHHHHHHHHHHT--EEE-S--EEEEEE------
T ss_pred HHHHhcCC------eEEEcCC-------------CEECCCCCcHHHHHHHHHHHHHHcC-CEEEeCCEeeeeee------
Confidence 1222222 111 111 1111122335788899999999987 99999999999976
Q ss_pred cccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 143 ISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+++....|.++++.++.||.||-|.|..|-
T Consensus 138 -------------~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 -------------KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp -------------ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred -------------cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 133448888878889999999999998773
No 77
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.09 E-value=0.00019 Score=71.78 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=49.8
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCee-EEEeCCCcEEEeeEEEeecCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~adlvVgADG~ 182 (451)
++-..+.+.|.+.+.+.| ++|+.+++|++++. .++.+ .|...++ ++.+|.||-|.|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G-~~i~~~~~V~~i~~--------------------~~~~~~~v~t~~~-~~~a~~VV~a~G~ 255 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLG-VKFRFNTPVDGLLV--------------------EGGRITGVQTGGG-VITADAYVVALGS 255 (416)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEEeCCc-EEeCCEEEECCCc
Confidence 344578888999888887 89999999999975 23343 4555544 7899999999999
Q ss_pred CCh-hhhhhCCC
Q 013000 183 KSR-VRELAGFK 193 (451)
Q Consensus 183 ~S~-vR~~l~~~ 193 (451)
+|. +-+.++..
T Consensus 256 ~~~~l~~~~g~~ 267 (416)
T PRK00711 256 YSTALLKPLGVD 267 (416)
T ss_pred chHHHHHHhCCC
Confidence 985 33444433
No 78
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.08 E-value=0.00036 Score=71.58 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=69.4
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC----cEEEeeEEEee
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVGA 179 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg----~~~~adlvVgA 179 (451)
++-..|...|...+.+.| ++++.+++|++++. +++.+.|...|+ .++.|++||.|
T Consensus 152 vd~~rl~~~l~~~a~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~g~~~~i~a~~VVnA 210 (502)
T PRK13369 152 VDDARLVVLNALDAAERG-ATILTRTRCVSARR--------------------EGGLWRVETRDADGETRTVRARALVNA 210 (502)
T ss_pred ecHHHHHHHHHHHHHHCC-CEEecCcEEEEEEE--------------------cCCEEEEEEEeCCCCEEEEEecEEEEC
Confidence 667888889999998887 89999999999976 345566766554 26999999999
Q ss_pred cCCCCh-hhhhh-CCCCCCCcccCeEEEEEEeecCCCCeeEEEecCCC-cEEEeecCCCce
Q 013000 180 DGGKSR-VRELA-GFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAG-PIALLPIGDNFS 237 (451)
Q Consensus 180 DG~~S~-vR~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~p~~~~~~ 237 (451)
+|.+|. +.+.+ +......-....+....++........+....+++ .++++|..++..
T Consensus 211 aG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~~~~~~~~~~~~~~~~dgr~~~i~P~~~~~~ 271 (502)
T PRK13369 211 AGPWVTDVIHRVAGSNSSRNVRLVKGSHIVVPKFWDGAQAYLFQNPDKRVIFANPYEGDFT 271 (502)
T ss_pred CCccHHHHHhhccCCCCCcceEEeeEEEEEeCCccCCCceEEEeCCCCeEEEEEEecCCEE
Confidence 999986 44433 43321111222222222322221121222223344 457788765543
No 79
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.08 E-value=0.00012 Score=72.97 Aligned_cols=114 Identities=16% Similarity=0.077 Sum_probs=68.8
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEee-EEEeecCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAK-LVVGADGG 182 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~ad-lvVgADG~ 182 (451)
++-..+...|.+.+.+.| ++++.+++|++++. . +++..+.|...+| ++.++ +||+|+|.
T Consensus 180 v~p~~l~~~l~~~a~~~G-v~~~~~~~V~~i~~-----------~-------~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRG-VDIIQNCEVTGFIR-----------R-------DGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred CCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEEE-----------c-------CCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 455677788999998887 89999999999964 0 0123345766777 57776 66888888
Q ss_pred CChhhhhhCCCCCCCcccCeEEEEEEeecCCCCeeEEEecCCCcEEEeecCCCceEEE
Q 013000 183 KSRVRELAGFKTTGWSYSQNAIICTVEHNKENYCAWQRFLPAGPIALLPIGDNFSNIV 240 (451)
Q Consensus 183 ~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~ 240 (451)
.|.+++.++.......+....+. .+ .............+..+++.|..++...+.
T Consensus 240 ~~~l~~~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~y~~p~~~g~~~ig 294 (407)
T TIGR01373 240 SSVVAAMAGFRLPIESHPLQALV--SE-PLKPIIDTVVMSNAVHFYVSQSDKGELVIG 294 (407)
T ss_pred hHHHHHHcCCCCCcCcccceEEE--ec-CCCCCcCCeEEeCCCceEEEEcCCceEEEe
Confidence 88899888766443333322221 11 111100111122445567778776654333
No 80
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.06 E-value=2.8e-06 Score=76.01 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=47.6
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
..+..+.+.|.+.+.+.+ ++++++++|++++. .+..+.|++.++.+++||.||.|.|..
T Consensus 79 ~~~~~v~~yl~~~~~~~~-l~i~~~~~V~~v~~--------------------~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFG-LEIRFNTRVESVRR--------------------DGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp EBHHHHHHHHHHHHHHTT-GGEETS--EEEEEE--------------------ETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred CCHHHHHHHHHHHHhhcC-cccccCCEEEEEEE--------------------eccEEEEEEEecceeeeeeEEEeeecc
Confidence 677888899999888886 88999999999987 445599999999889999999999987
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
|.
T Consensus 138 ~~ 139 (203)
T PF13738_consen 138 SH 139 (203)
T ss_dssp CS
T ss_pred CC
Confidence 66
No 81
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.06 E-value=0.00013 Score=65.75 Aligned_cols=47 Identities=26% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc-EEEeeEEEee
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGA 179 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-~~~adlvVgA 179 (451)
..|-+.|... .+|+++++|+.+.. .++..++..+||. ...+|.||-|
T Consensus 108 salak~LAtd------L~V~~~~rVt~v~~--------------------~~~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 108 SALAKFLATD------LTVVLETRVTEVAR--------------------TDNDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred HHHHHHHhcc------chhhhhhhhhhhee--------------------cCCeeEEEecCCCcccccceEEEe
Confidence 4555555542 57889999999977 5788999997775 6778877755
No 82
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.02 E-value=0.00014 Score=74.50 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=51.4
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC---Cc--EEEeeEEEe
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLVVG 178 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~--~~~adlvVg 178 (451)
++-..|...|...+.+.| ++++.+++|+++.. +++.+.|...| |+ ++.++.||.
T Consensus 152 vd~~rl~~~l~~~A~~~G-a~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~a~~VVn 210 (508)
T PRK12266 152 VDDARLVVLNARDAAERG-AEILTRTRVVSARR--------------------ENGLWHVTLEDTATGKRYTVRARALVN 210 (508)
T ss_pred cCHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------eCCEEEEEEEEcCCCCEEEEEcCEEEE
Confidence 566777778888888887 89999999999975 34556666654 53 789999999
Q ss_pred ecCCCCh-hhhh-hCC
Q 013000 179 ADGGKSR-VREL-AGF 192 (451)
Q Consensus 179 ADG~~S~-vR~~-l~~ 192 (451)
|+|.+|. +++. ++.
T Consensus 211 AaG~wa~~l~~~~~g~ 226 (508)
T PRK12266 211 AAGPWVKQFLDDGLGL 226 (508)
T ss_pred CCCccHHHHHhhccCC
Confidence 9999885 4443 344
No 83
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.00 E-value=5.4e-05 Score=77.58 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=84.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC-CCCCCCCCCCCCCCCCceeeecHHHHHHHHHCC-CchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP-ALGKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lg-l~~~~~~~~~~~~~~~~ 78 (451)
|||+.+|+.+++. |.+|+|+|++. .+...+| .+...|..- ...++-++.+| +...+..... . .+.
T Consensus 14 pAG~eAA~~aAR~----G~kV~LiE~~~d~iG~m~C-----npsiGG~ak-g~lvrEidalGg~~g~~~d~~g--i-q~r 80 (618)
T PRK05192 14 HAGCEAALAAARM----GAKTLLLTHNLDTIGQMSC-----NPAIGGIAK-GHLVREIDALGGEMGKAIDKTG--I-QFR 80 (618)
T ss_pred HHHHHHHHHHHHc----CCcEEEEecccccccccCC-----ccccccchh-hHHHHHHHhcCCHHHHHHhhcc--C-cee
Confidence 6899999999994 99999999985 3333344 111222211 11123334443 1112211110 0 111
Q ss_pred EEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 79 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+..... ... .......++|..+...|.+.+.+.+++++. ...|+++.. +++
T Consensus 81 ~ln~sk-GpA--------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-------------------e~g 131 (618)
T PRK05192 81 MLNTSK-GPA--------VRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-------------------ENG 131 (618)
T ss_pred ecccCC-CCc--------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-------------------cCC
Confidence 111110 000 000113588999999999999887778885 557888865 123
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
....|...+|..+.|+.||.|+|..+.
T Consensus 132 rV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 132 RVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred EEEEEEECCCCEEECCEEEEeeCcchh
Confidence 445588889999999999999998664
No 84
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=97.93 E-value=9.3e-05 Score=74.04 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.+...+...+...+ .+|+++++|+.|+. .++.++|.+.||+++.||.||.|-......+
T Consensus 210 ~~~~~~~~~~~~~g-~~i~l~~~V~~I~~--------------------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 210 GLSLALALAAEELG-GEIRLNTPVTRIER--------------------EDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp TTHHHHHHHHHHHG-GGEESSEEEEEEEE--------------------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred chhHHHHHHHhhcC-ceeecCCcceeccc--------------------cccccccccccceEEecceeeecCchhhhhh
Confidence 33344444443334 58999999999987 5688999999999999999998887655554
No 85
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.85 E-value=0.00016 Score=70.28 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=83.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEE-cCCCCCCCCCCCCCCCCCCCceeeecHH-HHHHHHHCCCchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAII-DSNPALGKSNFIKKEDPPDPRVSTVTPA-TISFFKEIGAWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~vi-Er~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~L~~lgl~~~~~~~~~~~~~~~~ 78 (451)
.||+.+|+.+++. |.+|+++ ++.......+| .+...|+ ... ..+-++.+| ..+... . ....++
T Consensus 9 ~AG~eAA~aaAr~----G~~V~Lit~~~d~i~~~~C-----npsigg~--~kg~L~~Eidalg--g~m~~~-a-D~~~i~ 73 (392)
T PF01134_consen 9 HAGCEAALAAARM----GAKVLLITHNTDTIGEMSC-----NPSIGGI--AKGHLVREIDALG--GLMGRA-A-DETGIH 73 (392)
T ss_dssp HHHHHHHHHHHHT----T--EEEEES-GGGTT--SS-----SSEEEST--THHHHHHHHHHTT---SHHHH-H-HHHEEE
T ss_pred HHHHHHHHHHHHC----CCCEEEEeecccccccccc-----hhhhccc--cccchhHHHhhhh--hHHHHH-H-hHhhhh
Confidence 3899999999995 9999999 55555555556 2222222 111 234455555 111111 1 122333
Q ss_pred EE-eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC
Q 013000 79 VW-DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK 157 (451)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (451)
+. .+..++. ....+.+.++|..+.+.+.+.+.+.++++|+. .+|+++.. ++
T Consensus 74 ~~~lN~skGp--------av~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-------------------e~ 125 (392)
T PF01134_consen 74 FRMLNRSKGP--------AVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-------------------EN 125 (392)
T ss_dssp EEEESTTS-G--------GCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-------------------CT
T ss_pred hhcccccCCC--------CccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-------------------cC
Confidence 32 1111110 01112358999999999999999988899975 58999976 24
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
+....|...+|+.+.+|.||.|+|.
T Consensus 126 ~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 126 GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CeEEEEEeCCCCEEecCEEEEeccc
Confidence 5667788999999999999999998
No 86
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.82 E-value=0.00031 Score=71.47 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=54.9
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEE
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLV 176 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlv 176 (451)
..++-..+.+.|.+.+++.|+++|+++++|++++. +.++.+.|... +|. ++.|++|
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~-------------------~~dg~~~v~~~~~~~G~~~~i~A~~V 238 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR-------------------NDDGSWTVTVKDLKTGEKRTVRAKFV 238 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE-------------------CCCCCEEEEEEEcCCCceEEEEcCEE
Confidence 46888899999999999886689999999999976 12233555543 354 6899988
Q ss_pred EeecCCCC-hhhhhhCCC
Q 013000 177 VGADGGKS-RVRELAGFK 193 (451)
Q Consensus 177 VgADG~~S-~vR~~l~~~ 193 (451)
|.|.|.+| .+++.+|..
T Consensus 239 VvaAGg~s~~L~~~~Gi~ 256 (494)
T PRK05257 239 FIGAGGGALPLLQKSGIP 256 (494)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 77776655 578888766
No 87
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.81 E-value=6.1e-06 Score=82.70 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=29.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|||+++|+.++++ |.+|+||||.+.+..... .+....+......-...-|+..++...... ....
T Consensus 9 ~aG~~AAi~AAr~----G~~VlLiE~~~~lGG~~t-------~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~-~~~~--- 73 (428)
T PF12831_consen 9 PAGVAAAIAAARA----GAKVLLIEKGGFLGGMAT-------SGGVSPFDGNHDEDQVIGGIFREFLNRLRA-RGGY--- 73 (428)
T ss_dssp HHHHHHHHHHHHT----TS-EEEE-SSSSSTGGGG-------GSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred HHHHHHHHHHHHC----CCEEEEEECCccCCCcce-------ECCcCChhhcchhhccCCCHHHHHHHHHhh-hccc---
Confidence 6899999999995 999999999998743221 011111111110001111333444332210 0000
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..+. . ......+.+++..+..+|.+.+.+.+ ++|++++.|+++.. +++..
T Consensus 74 --------~~~~-~-~~~~~~~~~~~~~~~~~l~~~l~e~g-v~v~~~t~v~~v~~-------------------~~~~i 123 (428)
T PF12831_consen 74 --------PQED-R-YGWVSNVPFDPEVFKAVLDEMLAEAG-VEVLLGTRVVDVIR-------------------DGGRI 123 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cccc-c-cccccccccccccccccccccccccc-cccccccccccccc-------------------ccccc
Confidence 0000 0 00000145667777777777777765 99999999999976 12233
Q ss_pred eEEEeCC--C-cEEEeeEEEeecCCCChhhhhhCC
Q 013000 161 AKLDLSD--G-TSLYAKLVVGADGGKSRVRELAGF 192 (451)
Q Consensus 161 v~v~~~d--g-~~~~adlvVgADG~~S~vR~~l~~ 192 (451)
..|.+.+ | .++.|+++|+|+|- ..+-...|.
T Consensus 124 ~~V~~~~~~g~~~i~A~~~IDaTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 124 TGVIVETKSGRKEIRAKVFIDATGD-GDLAALAGA 157 (428)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccc
Confidence 4455543 4 48999999999995 455555543
No 88
>PLN02661 Putative thiazole synthesis
Probab=97.77 E-value=0.00029 Score=67.41 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=76.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
|+||++|+.|++. .|++|+||||...+....|... .......+.....++|+++|+. ++
T Consensus 102 ~AGl~AA~~La~~---~g~kV~viEk~~~~GGG~~~gg---~l~~~~vv~~~a~e~LeElGV~----------fd----- 160 (357)
T PLN02661 102 SAGLSCAYELSKN---PNVKVAIIEQSVSPGGGAWLGG---QLFSAMVVRKPAHLFLDELGVP----------YD----- 160 (357)
T ss_pred HHHHHHHHHHHHc---CCCeEEEEecCcccccceeeCc---ccccccccccHHHHHHHHcCCC----------cc-----
Confidence 5899999999974 4899999999887733222000 0000111222234556665541 10
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL 160 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
..+ .+....+-..+.+.|.+.+.+.++++++.++.|+++.. +++..
T Consensus 161 -~~d--------------gy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-------------------~~grV 206 (357)
T PLN02661 161 -EQE--------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-------------------KGDRV 206 (357)
T ss_pred -cCC--------------CeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-------------------cCCEE
Confidence 000 00011133456677888777655699999999999876 12223
Q ss_pred eEEEe------CC--------CcEEEeeEEEeecCCCChh
Q 013000 161 AKLDL------SD--------GTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 161 v~v~~------~d--------g~~~~adlvVgADG~~S~v 186 (451)
..|.+ .+ ...+.|+.||.|.|..+++
T Consensus 207 aGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ 246 (357)
T PLN02661 207 GGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPF 246 (357)
T ss_pred EEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcc
Confidence 33332 11 1268999999999976653
No 89
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.73 E-value=0.00095 Score=65.73 Aligned_cols=73 Identities=22% Similarity=0.266 Sum_probs=59.5
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcE-EEeeEEEeec
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS-LYAKLVVGAD 180 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~-~~adlvVgAD 180 (451)
..++-..+-..|.+.+++.| ++++++++|++++. +.++...+...+|++ ++|++||.|-
T Consensus 148 giV~~~~~t~~l~e~a~~~g-~~i~ln~eV~~i~~-------------------~~dg~~~~~~~~g~~~~~ak~Vin~A 207 (429)
T COG0579 148 GIVDPGELTRALAEEAQANG-VELRLNTEVTGIEK-------------------QSDGVFVLNTSNGEETLEAKFVINAA 207 (429)
T ss_pred ceEcHHHHHHHHHHHHHHcC-CEEEecCeeeEEEE-------------------eCCceEEEEecCCcEEEEeeEEEECC
Confidence 35778899999999999996 89999999999987 123356677788876 9999999999
Q ss_pred CCCCh-hhhhhCCCC
Q 013000 181 GGKSR-VRELAGFKT 194 (451)
Q Consensus 181 G~~S~-vR~~l~~~~ 194 (451)
|..|. +-+..+.+.
T Consensus 208 Gl~Ad~la~~~g~~~ 222 (429)
T COG0579 208 GLYADPLAQMAGIPE 222 (429)
T ss_pred chhHHHHHHHhCCCc
Confidence 99887 566666654
No 90
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.71 E-value=0.0014 Score=63.32 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=50.7
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCee-EEEeCCCcEEEeeEEEeecC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~dg~~~~adlvVgADG 181 (451)
.++-..|.+.|.+.+.+.| ++++.+++|++++. .++.+ .|...+| ++.||.||.|.|
T Consensus 133 ~v~p~~l~~~l~~~~~~~g-~~~~~~~~v~~i~~--------------------~~~~~~~v~~~~g-~~~a~~vV~a~G 190 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLG-VEIIEHTEVQHIEI--------------------RGEKVTAIVTPSG-DVQADQVVLAAG 190 (337)
T ss_pred eEChHHHHHHHHHHHHHcC-CEEEccceEEEEEe--------------------eCCEEEEEEcCCC-EEECCEEEEcCC
Confidence 4677899999999999987 89999999999976 33433 4666666 789999999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
.+|.
T Consensus 191 ~~~~ 194 (337)
T TIGR02352 191 AWAG 194 (337)
T ss_pred hhhh
Confidence 9887
No 91
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.68 E-value=0.0001 Score=74.27 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=47.7
Q ss_pred echHHHHHHHHHHhhcCCCce--EEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC--c--EEEeeEEE
Q 013000 104 VENKVLHSSLLSCMQNTEFQK--TIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--T--SLYAKLVV 177 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~--i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~--~~~adlvV 177 (451)
..+..+.+.|.+.+.+.+ +. |+++++|++++. .++.+.|+..++ . +..+|.||
T Consensus 108 p~~~ev~~YL~~~a~~fg-l~~~I~~~t~V~~V~~--------------------~~~~w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 108 PSHREVLAYLQDFAREFK-IEEMVRFETEVVRVEP--------------------VDGKWRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCHHHHHHHHHHHHHHcC-CcceEEecCEEEEEee--------------------cCCeEEEEEEcCCCceEEEEcCEEE
Confidence 456788899999998876 66 999999999976 345677877543 2 46799999
Q ss_pred eecCCCCh
Q 013000 178 GADGGKSR 185 (451)
Q Consensus 178 gADG~~S~ 185 (451)
.|.|..+.
T Consensus 167 vAtG~~~~ 174 (461)
T PLN02172 167 VCNGHYTE 174 (461)
T ss_pred EeccCCCC
Confidence 99998754
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.61 E-value=0.0021 Score=67.50 Aligned_cols=73 Identities=23% Similarity=0.318 Sum_probs=53.2
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEE
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVV 177 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvV 177 (451)
.++=..|...|.+.+.+.| ++++.+++|+++.. ..+ ++..+.|.. .+|+ ++.+|.||
T Consensus 228 ~vdp~rl~~al~~~A~~~G-a~i~~~~~V~~l~~---------~~~--------~g~v~gV~v~d~~tg~~~~i~a~~VV 289 (627)
T PLN02464 228 QMNDSRLNVALACTAALAG-AAVLNYAEVVSLIK---------DES--------TGRIVGARVRDNLTGKEFDVYAKVVV 289 (627)
T ss_pred EEcHHHHHHHHHHHHHhCC-cEEEeccEEEEEEE---------ecC--------CCcEEEEEEEECCCCcEEEEEeCEEE
Confidence 3677899999999999987 89999999999875 000 122233443 2344 68999999
Q ss_pred eecCCCCh-hhhhhCCC
Q 013000 178 GADGGKSR-VRELAGFK 193 (451)
Q Consensus 178 gADG~~S~-vR~~l~~~ 193 (451)
.|.|.+|. +++.++..
T Consensus 290 nAaGaws~~l~~~~g~~ 306 (627)
T PLN02464 290 NAAGPFCDEVRKMADGK 306 (627)
T ss_pred ECCCHhHHHHHHhccCc
Confidence 99999987 67766533
No 93
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.56 E-value=0.0016 Score=66.14 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=53.3
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEE
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV 176 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlv 176 (451)
..++-..+.+.|.+.+++.| ++|+++++|++++. +.++.+.+.. .+|. +++||.|
T Consensus 173 g~Vdp~~l~~aL~~~a~~~G-v~i~~~t~V~~i~~-------------------~~~~~v~v~~~~~~~g~~~~i~A~~V 232 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNG-TTIRFGHEVRNLKR-------------------QSDGSWTVTVKNTRTGGKRTLNTRFV 232 (483)
T ss_pred EEECHHHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------------------cCCCeEEEEEeeccCCceEEEECCEE
Confidence 35788999999999999886 99999999999975 1223455543 2342 6899998
Q ss_pred EeecCCC-ChhhhhhCCC
Q 013000 177 VGADGGK-SRVRELAGFK 193 (451)
Q Consensus 177 VgADG~~-S~vR~~l~~~ 193 (451)
|-|-|.+ +.+++.+|..
T Consensus 233 V~AAG~~s~~La~~~Gi~ 250 (483)
T TIGR01320 233 FVGAGGGALPLLQKSGIP 250 (483)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 6666654 5588888766
No 94
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.51 E-value=0.0013 Score=66.27 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-CcEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~~~~adlvVgADG~~S~ 185 (451)
..+.+.|.+.+++.+ ++|+++++|+++.. ..+ .+..+.|...+ +..+.++.||-|.|..+.
T Consensus 123 ~~l~~~L~~~a~~~G-v~i~~~~~v~~l~~---------~~~--------~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 123 KALTNALYSSAERLG-VEIRYGIAVDRIPP---------EAF--------DGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEe---------cCC--------CCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 468888999998887 99999999999975 000 11233344433 357899999999998776
Q ss_pred hhh
Q 013000 186 VRE 188 (451)
Q Consensus 186 vR~ 188 (451)
-+.
T Consensus 185 n~~ 187 (432)
T TIGR02485 185 NRD 187 (432)
T ss_pred CHH
Confidence 443
No 95
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.49 E-value=0.00071 Score=64.28 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
..+...|.+.+.+.+ +++++ .+|+++.. .+..+.|...+|.++++|.||.|.|...
T Consensus 57 ~~~~~~l~~~~~~~g-v~~~~-~~v~~v~~--------------------~~~~~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFG-AEIIY-EEVIKVDL--------------------SDRPFKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcC-CeEEE-EEEEEEEe--------------------cCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence 456667777777776 89988 79999865 3355778788888999999999999864
No 96
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.41 E-value=0.0067 Score=56.75 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=58.1
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.+.-..-.++|.+.+++.| +.++.|..|+.+... + +.+..+.|...+|+.+.|+=+|-+-|+
T Consensus 149 vi~a~kslk~~~~~~~~~G-~i~~dg~~v~~~~~~----------~-------e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 149 VINAAKSLKALQDKARELG-VIFRDGEKVKFIKFV----------D-------EEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred EeeHHHHHHHHHHHHHHcC-eEEecCcceeeEeec----------c-------CCCceeEEEeccCCeeecceEEEEecH
Confidence 3666778889999999998 899999999998751 1 256778999999999999999999998
Q ss_pred --CChhhhhhCCC
Q 013000 183 --KSRVRELAGFK 193 (451)
Q Consensus 183 --~S~vR~~l~~~ 193 (451)
++.++..++..
T Consensus 211 Wi~klL~~~~~~~ 223 (399)
T KOG2820|consen 211 WINKLLPTSLAIG 223 (399)
T ss_pred HHHhhcCcccccC
Confidence 45556544433
No 97
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.37 E-value=0.0013 Score=67.43 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=86.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC-CCCCCCCCCCCCCCceeeecHHHHHHHHHCC-CchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL-GKSNFIKKEDPPDPRVSTVTPATISFFKEIG-AWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lg-l~~~~~~~~~~~~~~~~ 78 (451)
+||+.+|..+++ .|.+|+|+|++... ...+| .+...|..-. ...+-++.+| ....+..... ..+.
T Consensus 10 ~AGl~aA~ala~----~G~~v~Lie~~~~~~g~~~c-----~ps~gG~a~g-~l~rEidaLGG~~~~~~d~~~---i~~r 76 (617)
T TIGR00136 10 HAGCEAALAAAR----MGAKTLLLTLNLDTIGKCSC-----NPAIGGPAKG-ILVKEIDALGGLMGKAADKAG---LQFR 76 (617)
T ss_pred HHHHHHHHHHHH----CCCCEEEEecccccccCCCc-----cccccccccc-hhhhhhhcccchHHHHHHhhc---eehe
Confidence 589999999999 49999999998542 22334 1111122111 0122333333 1111111110 0111
Q ss_pred EEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC
Q 013000 79 VWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG 158 (451)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (451)
+..... .. . . ......++|..+.+.|.+.+.+.++++++.+ .|+++.. + +++
T Consensus 77 ~ln~sk-gp------A-V-~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~-----------e-------~~g 128 (617)
T TIGR00136 77 VLNSSK-GP------A-V-RATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLIL-----------E-------DND 128 (617)
T ss_pred ecccCC-CC------c-c-cccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEE-----------e-------cCC
Confidence 111100 00 0 0 0111468999999999999999877888765 7887754 0 023
Q ss_pred CeeEEEeCCCcEEEeeEEEeecCCCChhhhhh
Q 013000 159 HLAKLDLSDGTSLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 159 ~~v~v~~~dg~~~~adlvVgADG~~S~vR~~l 190 (451)
..+.|...+|..+.|+.||.|.|.++.-+-++
T Consensus 129 ~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihi 160 (617)
T TIGR00136 129 EIKGVVTQDGLKFRAKAVIITTGTFLRGKIHI 160 (617)
T ss_pred cEEEEEECCCCEEECCEEEEccCcccCCCEEe
Confidence 55678888999999999999999997544333
No 98
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.29 E-value=0.0015 Score=67.22 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
...|.+.|.+.+++.+ ++++.+++|+++.. .++...|.+.+|..+.+|.||.|+|.++
T Consensus 265 ~~~l~~~l~~~~~~~g-v~i~~~~~V~~I~~--------------------~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 265 GPKLAAALEEHVKEYD-VDIMNLQRASKLEP--------------------AAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 4578888888888886 99999999999976 3356778888888999999999999976
No 99
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.0019 Score=64.33 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=80.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeee-cHHHH----HHHHHC--CCchhhhhhhccc
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTV-TPATI----SFFKEI--GAWQYVQQHRHAY 73 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l-~~~~~----~~L~~l--gl~~~~~~~~~~~ 73 (451)
||||++|..|.+ +|++|+|+||..... |+-. .++.- .+.+.+ .+.++..
T Consensus 16 ~sGL~~ar~l~~----~g~~v~vfEr~~~iG--------------GlW~y~~~~~~~~ss~Y~~l~tn~pKe~~------ 71 (448)
T KOG1399|consen 16 PAGLAAARELLR----EGHEVVVFERTDDIG--------------GLWKYTENVEVVHSSVYKSLRTNLPKEMM------ 71 (448)
T ss_pred hHHHHHHHHHHH----CCCCceEEEecCCcc--------------ceEeecCcccccccchhhhhhccCChhhh------
Confidence 699999999999 499999999999871 2211 11110 011111 1111111
Q ss_pred ccEEEEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCC-CceEEcCCeeEEEEeCCCCCCcccCCCCCcc
Q 013000 74 FDKMQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSAT 152 (451)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g-~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ 152 (451)
.|+.-+......-+..++..+.+.|.+.+++.+ ...|+++++|..+..
T Consensus 72 ---------------~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~---------------- 120 (448)
T KOG1399|consen 72 ---------------GYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS---------------- 120 (448)
T ss_pred ---------------cCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee----------------
Confidence 111111111222355677799999999998764 137999999998865
Q ss_pred ccccCC-CeeEEEeCCC----cEEEeeEEEeecCCCC
Q 013000 153 TLFTKG-HLAKLDLSDG----TSLYAKLVVGADGGKS 184 (451)
Q Consensus 153 ~~~~~~-~~v~v~~~dg----~~~~adlvVgADG~~S 184 (451)
.. +.+.|...++ ....+|.||.|.|.+.
T Consensus 121 ----~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 121 ----IDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred ----ccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 33 6788888765 3677999999999983
No 100
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.24 E-value=0.00096 Score=65.59 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=72.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCch-hhhhhhcccccEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQ-YVQQHRHAYFDKMQV 79 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~-~~~~~~~~~~~~~~~ 79 (451)
++|+.+|+.|++ +|++|+|+|+++.+..... .......+...++..+..++...|++. ++...+. ..+
T Consensus 12 lAGleAAlaLAr----~Gl~V~LiE~rp~~~s~a~--~~~~~~ervca~Slgs~~ll~a~Gll~~em~~lgs-----l~~ 80 (436)
T PRK05335 12 LAGSEAAWQLAK----RGVPVELYEMRPVKKTPAH--HTDGFAELVCSNSFRSDSLTNAVGLLKEEMRRLGS-----LIM 80 (436)
T ss_pred HHHHHHHHHHHh----CCCcEEEEEccCccCcccc--cCccccccccchhhhhhhHHhcCCchHHHHHHhcc-----hhe
Confidence 589999999999 5999999999876632110 000112234556666777888999886 3333221 111
Q ss_pred EeCCCcceeEeecCCCCCccc-eeeechHHHHHHHHHHhhcCCCceEEcCCeeEEE
Q 013000 80 WDYTGLGYTKYNARDVNKEIL-GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 134 (451)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~ 134 (451)
...+ ....+.. .+.++|..|.+.|.+.+.+.++++++ ..+|+++
T Consensus 81 ~aad----------~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l 125 (436)
T PRK05335 81 EAAD----------AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEI 125 (436)
T ss_pred eccc----------ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhcc
Confidence 1100 0011111 25789999999999999998889998 4588877
No 101
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.24 E-value=0.0033 Score=65.01 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC-CeeEEEe-------CCC-cEEEeeEEE
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDL-------SDG-TSLYAKLVV 177 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~-------~dg-~~~~adlvV 177 (451)
..+.+.|.+.+.+.+ ++++.++.|+++.. +++ ..+.+.. .++ ..+.|+.||
T Consensus 144 ~~i~~~L~~~~~~~g-V~i~~~~~v~~Li~-------------------~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VI 203 (541)
T PRK07804 144 AEVQRALDAAVRADP-LDIREHALALDLLT-------------------DGTGAVAGVTLHVLGEGSPDGVGAVHAPAVV 203 (541)
T ss_pred HHHHHHHHHHHHhCC-CEEEECeEeeeeEE-------------------cCCCeEEEEEEEeccCCCCCcEEEEEcCeEE
Confidence 468889999998887 99999999999975 111 2233332 233 368999999
Q ss_pred eecCCCChhh
Q 013000 178 GADGGKSRVR 187 (451)
Q Consensus 178 gADG~~S~vR 187 (451)
.|+|..|.++
T Consensus 204 lATGG~~~~~ 213 (541)
T PRK07804 204 LATGGLGQLY 213 (541)
T ss_pred ECCCCCCCCC
Confidence 9999999764
No 102
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.23 E-value=0.0027 Score=66.20 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCee-E---EEeCCCc--EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-K---LDLSDGT--SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~---v~~~dg~--~~~adlvVgAD 180 (451)
..|.+.|.+.+.+.++++++.++.++++.. .++.| . +...+|+ .+.|+.||.|+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~--------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVIlAT 192 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILV--------------------DDGHVRGLVAMNMMEGTLVQIRANAVVMAT 192 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEE--------------------eCCEEEEEEEEEcCCCcEEEEECCEEEECC
Confidence 468888888887765699999999999876 22333 2 2345674 78999999999
Q ss_pred CCCChhh
Q 013000 181 GGKSRVR 187 (451)
Q Consensus 181 G~~S~vR 187 (451)
|..|.+-
T Consensus 193 GG~~~l~ 199 (582)
T PRK09231 193 GGAGRVY 199 (582)
T ss_pred CCCcCCC
Confidence 9999763
No 103
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.22 E-value=0.0036 Score=63.50 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=55.1
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEE
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLV 176 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlv 176 (451)
..++...|.+.|.+.+.+.++++++++++|++++. +.++.+.|.+ .+|. +++||+|
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~-------------------~~d~~w~v~v~~t~~g~~~~i~Ad~V 239 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER-------------------LSDGGWEVTVKDRNTGEKREQVADYV 239 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE-------------------CCCCCEEEEEEecCCCceEEEEcCEE
Confidence 45888999999999996554599999999999976 1145566653 3453 6899999
Q ss_pred EeecCCCCh-hhhhhCCC
Q 013000 177 VGADGGKSR-VRELAGFK 193 (451)
Q Consensus 177 VgADG~~S~-vR~~l~~~ 193 (451)
|-|-|.+|. +.+.+|..
T Consensus 240 V~AAGawS~~La~~~Gi~ 257 (497)
T PRK13339 240 FIGAGGGAIPLLQKSGIP 257 (497)
T ss_pred EECCCcchHHHHHHcCCC
Confidence 888888775 77777765
No 104
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.19 E-value=0.0086 Score=60.94 Aligned_cols=70 Identities=17% Similarity=0.237 Sum_probs=56.2
Q ss_pred eechHHHHHHHHHHhhc----CCC-ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEE
Q 013000 103 VVENKVLHSSLLSCMQN----TEF-QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVV 177 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~----~g~-v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvV 177 (451)
.++-..|.+.|.+.+++ .|. ++|+.+++|++++. +++..+.|...+| ++.||.||
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~-------------------~~~~~~~V~T~~G-~i~A~~VV 266 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER-------------------SNDSLYKIHTNRG-EIRARFVV 266 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe-------------------cCCCeEEEEECCC-EEEeCEEE
Confidence 57778899999999988 542 78999999999976 1245677887777 59999999
Q ss_pred eecCCCCh-hhhhhCC
Q 013000 178 GADGGKSR-VRELAGF 192 (451)
Q Consensus 178 gADG~~S~-vR~~l~~ 192 (451)
-|.|.+|. +.+.+|.
T Consensus 267 vaAG~~S~~La~~~Gi 282 (497)
T PTZ00383 267 VSACGYSLLFAQKMGY 282 (497)
T ss_pred ECcChhHHHHHHHhCC
Confidence 99999996 6677765
No 105
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.19 E-value=0.0044 Score=64.66 Aligned_cols=61 Identities=20% Similarity=0.115 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe-eEEE---eCCCc--EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLD---LSDGT--SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~---~~dg~--~~~adlvVgAD 180 (451)
..+...|.+.+.+.+ +++++++.|+++.. .++. +.|. ..+|+ .+.|+.||.|+
T Consensus 129 ~~i~~~L~~~~~~~g-v~i~~~~~v~~L~~--------------------~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAt 187 (566)
T TIGR01812 129 HALLHTLYEQCLKLG-VSFFNEYFALDLIH--------------------DDGRVRGVVAYDLKTGEIVFFRAKAVVLAT 187 (566)
T ss_pred HHHHHHHHHHHHHcC-CEEEeccEEEEEEE--------------------eCCEEEEEEEEECCCCcEEEEECCeEEECC
Confidence 357788888888875 99999999999976 2233 3333 24665 68999999999
Q ss_pred CCCChhhh
Q 013000 181 GGKSRVRE 188 (451)
Q Consensus 181 G~~S~vR~ 188 (451)
|..|.+..
T Consensus 188 GG~~~~~~ 195 (566)
T TIGR01812 188 GGYGRIYK 195 (566)
T ss_pred CcccCCCC
Confidence 99997654
No 106
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.15 E-value=0.0068 Score=63.18 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEE---EeCCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgADG 181 (451)
..|.+.|.+.+.+.++++++.++.++++.. +++..+.+ ...+|+ .+.|+.||.|+|
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 192 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLV-------------------DDGRVCGLVAIEMAEGRLVTILADAVVLATG 192 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEe-------------------eCCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence 468889998887765699999999999876 11222223 335674 689999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..|.+
T Consensus 193 G~~~~ 197 (580)
T TIGR01176 193 GAGRV 197 (580)
T ss_pred CCccc
Confidence 99875
No 107
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.15 E-value=0.011 Score=59.99 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=49.1
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++=..|.+.|.+.+++.| ++|+.++.|++++. +..+.|...+| ++.||.||.|.|.
T Consensus 179 ~i~P~~l~~~L~~~a~~~G-v~i~~~t~V~~i~~---------------------~~~~~v~t~~g-~v~A~~VV~Atga 235 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELG-VEIHENTPMTGLEE---------------------GQPAVVRTPDG-QVTADKVVLALNA 235 (460)
T ss_pred EECHHHHHHHHHHHHHHcC-CEEECCCeEEEEee---------------------CCceEEEeCCc-EEECCEEEEcccc
Confidence 4677889999999999887 99999999999853 23466777777 5899999999998
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
+|.
T Consensus 236 ~s~ 238 (460)
T TIGR03329 236 WMA 238 (460)
T ss_pred ccc
Confidence 864
No 108
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.13 E-value=0.0031 Score=63.59 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe--eEEEeCCCc--EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL--AKLDLSDGT--SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~~~dg~--~~~adlvVgADG~ 182 (451)
..|.+.|.+.+.+.+ ++|+++++|+++.. ++ ++.. +.+...+++ .+.++.||.|.|.
T Consensus 130 ~~l~~~l~~~~~~~g-v~i~~~~~v~~l~~-----------~~-------~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 130 AEIVQKLYKKAKKEG-IDTRLNSKVEDLIQ-----------DD-------QGTVVGVVVKGKGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEeeEeEE-----------CC-------CCcEEEEEEEeCCCeEEEEecceEEEecCC
Confidence 568888999998887 99999999999976 10 1122 334334454 4789999999999
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
.+.
T Consensus 191 ~~~ 193 (439)
T TIGR01813 191 FGS 193 (439)
T ss_pred CCC
Confidence 886
No 109
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.11 E-value=0.0057 Score=62.55 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-C--cEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-G--TSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g--~~~~adlvVgADG~~ 183 (451)
..+.+.|.+.+++..+++|++++.|+++.. +++..+.|...+ + ..+.++.||.|+|..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-------------------~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLI-------------------ETGRVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeec-------------------cCCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 578899999998754599999999999975 122223344433 3 368999999999999
Q ss_pred Chhhh
Q 013000 184 SRVRE 188 (451)
Q Consensus 184 S~vR~ 188 (451)
|.+..
T Consensus 189 ~~~~~ 193 (488)
T TIGR00551 189 GKLYQ 193 (488)
T ss_pred cCCCC
Confidence 98644
No 110
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.04 E-value=0.076 Score=52.40 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=50.2
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
++-..+.+.|.+.+.+.|...+..++.+..++. ....+.|...+|+ +.||.||-|.|.+
T Consensus 153 ~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~--------------------~~~~~~v~t~~g~-i~a~~vv~a~G~~ 211 (387)
T COG0665 153 LDPRLLTRALAAAAEELGVVIIEGGTPVTSLER--------------------DGRVVGVETDGGT-IEADKVVLAAGAW 211 (387)
T ss_pred CCHHHHHHHHHHHHHhcCCeEEEccceEEEEEe--------------------cCcEEEEEeCCcc-EEeCEEEEcCchH
Confidence 555788899999999998567777999999865 1145778777787 9999999999999
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
|..
T Consensus 212 ~~~ 214 (387)
T COG0665 212 AGE 214 (387)
T ss_pred HHH
Confidence 874
No 111
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.02 E-value=0.033 Score=56.36 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=55.1
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC---Cc--EEEeeEE
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---GT--SLYAKLV 176 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g~--~~~adlv 176 (451)
+.++=..|.-.....+.+.| .+++..++|+++.. +++.+.|...| |+ +++|+.|
T Consensus 159 ~~vddaRLv~~~a~~A~~~G-a~il~~~~v~~~~r--------------------e~~v~gV~~~D~~tg~~~~ira~~V 217 (532)
T COG0578 159 GVVDDARLVAANARDAAEHG-AEILTYTRVESLRR--------------------EGGVWGVEVEDRETGETYEIRARAV 217 (532)
T ss_pred ceechHHHHHHHHHHHHhcc-cchhhcceeeeeee--------------------cCCEEEEEEEecCCCcEEEEEcCEE
Confidence 34666788888888888887 79999999999977 33455677665 33 6999999
Q ss_pred EeecCCCCh-hhhhhCCC
Q 013000 177 VGADGGKSR-VRELAGFK 193 (451)
Q Consensus 177 VgADG~~S~-vR~~l~~~ 193 (451)
|-|.|.++- +++..+..
T Consensus 218 VNAaGpW~d~i~~~~~~~ 235 (532)
T COG0578 218 VNAAGPWVDEILEMAGLE 235 (532)
T ss_pred EECCCccHHHHHHhhccc
Confidence 999999997 57766544
No 112
>PLN02576 protoporphyrinogen oxidase
Probab=97.02 E-value=0.19 Score=51.49 Aligned_cols=34 Identities=9% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
+++.+.||... |-|++-||++|..+|+.|...+.
T Consensus 455 ~~l~~aG~~~~------g~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 455 PGLFLGGNYRG------GVALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred CCEEEeccccC------CccHHHHHHHHHHHHHHHHHHHh
Confidence 68999999985 56999999999999999977543
No 113
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.97 E-value=0.0084 Score=62.15 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe-eEEEeC---CC--cEEEeeEE
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLS---DG--TSLYAKLV 176 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~---dg--~~~~adlv 176 (451)
.++-..|...|...+.+.| ++++.+++|+++.. .++. +.|.+. +| .++.||.|
T Consensus 145 ~vdp~rl~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~d~~~g~~~~i~A~~V 203 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHG-AQILTYHEVTGLIR--------------------EGDTVCGVRVRDHLTGETQEIHAPVV 203 (546)
T ss_pred EECHHHHHHHHHHHHHhCC-CEEEeccEEEEEEE--------------------cCCeEEEEEEEEcCCCcEEEEECCEE
Confidence 4677888888999998887 89999999999976 2233 335442 34 37999999
Q ss_pred EeecCCCCh-hhhhhCCC
Q 013000 177 VGADGGKSR-VRELAGFK 193 (451)
Q Consensus 177 VgADG~~S~-vR~~l~~~ 193 (451)
|-|.|.+|. +.+..+..
T Consensus 204 VnAaG~wa~~l~~~~g~~ 221 (546)
T PRK11101 204 VNAAGIWGQHIAEYADLR 221 (546)
T ss_pred EECCChhHHHHHHhcCCC
Confidence 999999986 55555543
No 114
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.95 E-value=0.0049 Score=62.72 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe--CCCc--EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT--SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~--~~~adlvVgADG~ 182 (451)
..+...|.+.+++.+ ++++++++|+++.. +++..+.|.. .+|+ .+.++.||.|.|.
T Consensus 131 ~~l~~~l~~~~~~~g-v~i~~~t~v~~l~~-------------------~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 131 KALVNALYRSAERLG-VEIRYDAPVTALEL-------------------DDGRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe-------------------cCCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 567888888888886 99999999999975 1222333444 3443 6889999999997
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
.+.
T Consensus 191 ~~~ 193 (466)
T PRK08274 191 FES 193 (466)
T ss_pred CCC
Confidence 654
No 115
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=96.91 E-value=0.074 Score=54.55 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
...|.+.|.+.+++.| ++|+.+++|+++.. +++....|.+.+|+++.+|.||.|-|.+..
T Consensus 228 ~~~l~~~L~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 228 VGQIAESLVKGLEKHG-GQIRYRARVTKIIL-------------------ENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHHHHHHHHCC-CEEEeCCeeeEEEe-------------------cCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 3678888999999987 89999999999976 133556788889999999999999999888
Q ss_pred hhhhhC
Q 013000 186 VRELAG 191 (451)
Q Consensus 186 vR~~l~ 191 (451)
+++.+.
T Consensus 288 ~~~Ll~ 293 (493)
T TIGR02730 288 FGKLLK 293 (493)
T ss_pred HHHhCC
Confidence 877664
No 116
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.90 E-value=0.0052 Score=60.32 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=45.4
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++-..+...|.+.+.+..+++++.+++|++++. . .|...+|+ +.||.||-|.|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----------------------~--~v~t~~g~-i~a~~VV~A~G~ 195 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET----------------------G--TVRTSRGD-VHADQVFVCPGA 195 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec----------------------C--eEEeCCCc-EEeCEEEECCCC
Confidence 4666778888998877652389999999999954 2 46666675 689999999999
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
+|.
T Consensus 196 ~s~ 198 (365)
T TIGR03364 196 DFE 198 (365)
T ss_pred Chh
Confidence 874
No 117
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.88 E-value=0.0054 Score=62.98 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC---eeEEEeCCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDLSDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~~dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++++++++|+++.. +++ ++.+...+|+ ++.+|.||.|.|
T Consensus 190 ~~l~~~L~~~~~~~g-v~i~~~t~v~~l~~--------------------~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 190 GYLVDGLLKNVQERK-IPLFVNADVTKITE--------------------KDGKVTGVKVKINGKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHHcC-CeEEeCCeeEEEEe--------------------cCCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence 357788888888876 99999999999965 223 2334434543 689999999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
..+.
T Consensus 249 G~~~ 252 (506)
T PRK06481 249 GFGA 252 (506)
T ss_pred Cccc
Confidence 7665
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.88 E-value=0.0058 Score=62.93 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
...|...|.+.+++.+ ++++.+++|+++.. .++.+.+...+|..+.+|.||.|.|.+.
T Consensus 266 ~~~l~~~l~~~l~~~g-v~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 266 GSQLAANLEEHIKQYP-IDLMENQRAKKIET--------------------EDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHHhC-CeEEcCCEEEEEEe--------------------cCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 3567777888887775 99999999999865 3355778888888999999999999874
No 119
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.81 E-value=0.038 Score=56.17 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
.|.+.|.+.+. .++|+++++|+.++. .++++.|...+|+++.||.||.|--
T Consensus 227 ~l~~~l~~~l~---~~~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 227 TIIDRLEEVLT---ETVVKKGAVTTAVSK--------------------QGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHhcc---cccEEcCCEEEEEEE--------------------cCCEEEEEECCCCEEEeCEEEECCC
Confidence 34455555543 257999999999987 4466888888998899999998874
No 120
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.81 E-value=0.0077 Score=58.76 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=53.7
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-cEEEeeEEEeec
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGAD 180 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgAD 180 (451)
+.-.-.+..++|.+.+++.+ |+|+++++|++++. +...+.+.++ ..++||-||-|.
T Consensus 81 ~S~~A~sVv~~L~~~l~~~g-V~i~~~~~V~~i~~----------------------~~~~v~~~~~~~~~~a~~vIlAt 137 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQG-VQFHTRHRWIGWQG----------------------GTLRFETPDGQSTIEADAVVLAL 137 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CEEEeCCEEEEEeC----------------------CcEEEEECCCceEEecCEEEEcC
Confidence 34455789999999999987 99999999999832 2356666543 479999999999
Q ss_pred CCCC-----------hhhhhhCCCCC
Q 013000 181 GGKS-----------RVRELAGFKTT 195 (451)
Q Consensus 181 G~~S-----------~vR~~l~~~~~ 195 (451)
|..| .+.+.+|....
T Consensus 138 GG~s~p~~Gs~g~gy~la~~lGh~i~ 163 (376)
T TIGR03862 138 GGASWSQLGSDGAWQQVLDQRGVSVA 163 (376)
T ss_pred CCccccccCCCcHHHHHHHHCCCccc
Confidence 9877 55666664433
No 121
>PLN02612 phytoene desaturase
Probab=96.80 E-value=0.15 Score=53.20 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.|.+.|.+.+++.| ++|+++++|++|+. ++ ++..+.|.+.+|+++.+|.||-|... ...+
T Consensus 309 ~l~~~l~~~l~~~G-~~I~l~~~V~~I~~-----------~~-------~g~v~~v~~~~G~~~~ad~VI~a~p~-~~l~ 368 (567)
T PLN02612 309 RLCMPIVDHFQSLG-GEVRLNSRIKKIEL-----------ND-------DGTVKHFLLTNGSVVEGDVYVSATPV-DILK 368 (567)
T ss_pred HHHHHHHHHHHhcC-CEEEeCCeeeEEEE-----------CC-------CCcEEEEEECCCcEEECCEEEECCCH-HHHH
Confidence 35566777776776 79999999999976 10 11234577789999999999999764 3344
Q ss_pred hhh
Q 013000 188 ELA 190 (451)
Q Consensus 188 ~~l 190 (451)
+.+
T Consensus 369 ~Ll 371 (567)
T PLN02612 369 LLL 371 (567)
T ss_pred HhC
Confidence 443
No 122
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.76 E-value=0.0052 Score=63.13 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=49.1
Q ss_pred eechHHHHHHHHHHhhcCCC-ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-Cc--EEEeeEEEe
Q 013000 103 VVENKVLHSSLLSCMQNTEF-QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GT--SLYAKLVVG 178 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~-v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~--~~~adlvVg 178 (451)
..++..+.+.|.+.+.+.+- -.|+++++|++++.. .+. ...+.+.|+..+ |+ +..+|.||.
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~---------~d~------~~~~~W~V~~~~~g~~~~~~fD~Vvv 144 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERD---------PDF------SATGKWEVTTENDGKEETEEFDAVVV 144 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEE---------TTT------T-ETEEEEEETTTTEEEEEEECEEEE
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeec---------ccc------CCCceEEEEeecCCeEEEEEeCeEEE
Confidence 36889999999999987641 279999999999871 111 022568887754 43 456899999
Q ss_pred ecCCCCh
Q 013000 179 ADGGKSR 185 (451)
Q Consensus 179 ADG~~S~ 185 (451)
|.|.++.
T Consensus 145 atG~~~~ 151 (531)
T PF00743_consen 145 ATGHFSK 151 (531)
T ss_dssp EE-SSSC
T ss_pred cCCCcCC
Confidence 9999885
No 123
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0066 Score=61.05 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcE--EEeeEEEeecCCC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTS--LYAKLVVGADGGK 183 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~--~~adlvVgADG~~ 183 (451)
+..+...+.+.... ..+.++++|..+.. + +++...+|+..+|.+ +.+|.||-|.|..
T Consensus 85 ~~y~~~~~~~y~~~---~~i~~~~~v~~~~~-----------~-------~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 85 KDYIKDYLEKYGLR---FQIRFNTRVEVADW-----------D-------EDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred HHHHHHHHHHcCce---eEEEcccceEEEEe-----------c-------CCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 45555555555543 36777777777655 1 134679999988875 5599999999995
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
|.
T Consensus 144 ~~ 145 (443)
T COG2072 144 SE 145 (443)
T ss_pred CC
Confidence 54
No 124
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.76 E-value=0.0053 Score=61.44 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEee
Q 013000 105 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVGA 179 (451)
Q Consensus 105 ~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVgA 179 (451)
.-..+...|.+.+++.+ ++|+++++++++.. +++..+.|... +|+ .+.|+-||-|
T Consensus 139 ~g~~~~~~l~~~~~~~g-v~i~~~~~~~~Li~-------------------e~g~V~Gv~~~~~~~g~~~~i~A~aVIlA 198 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAG-VDIRFNTRVTDLIT-------------------EDGRVTGVVAENPADGEFVRIKAKAVILA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEESEEEEEEEE-------------------ETTEEEEEEEEETTTCEEEEEEESEEEE-
T ss_pred cHHHHHHHHHHHHhhcC-eeeeccceeeeEEE-------------------eCCceeEEEEEECCCCeEEEEeeeEEEec
Confidence 45788999999999998 99999999999987 22344445544 555 6889999999
Q ss_pred cCCCCh
Q 013000 180 DGGKSR 185 (451)
Q Consensus 180 DG~~S~ 185 (451)
.|..+.
T Consensus 199 tGG~~~ 204 (417)
T PF00890_consen 199 TGGFGG 204 (417)
T ss_dssp ---BGG
T ss_pred cCcccc
Confidence 999885
No 125
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.036 Score=57.99 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEE---EeCCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+..+++++.++.++++.. +++..+.+ ...+|+ .+.|+.||.|+|
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIV-------------------ENGVFKGVTAIDLKRGEFKVFQAKAGIIATG 197 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEE-------------------ECCEEEEEEEEEcCCCeEEEEECCcEEEcCc
Confidence 357788888887644599999999999875 12222233 234665 589999999999
Q ss_pred CCChhhh
Q 013000 182 GKSRVRE 188 (451)
Q Consensus 182 ~~S~vR~ 188 (451)
..+.+..
T Consensus 198 G~~~~~~ 204 (577)
T PRK06069 198 GAGRLYG 204 (577)
T ss_pred hhcccCC
Confidence 9886543
No 126
>PRK09897 hypothetical protein; Provisional
Probab=96.63 E-value=0.013 Score=60.15 Aligned_cols=50 Identities=16% Similarity=0.108 Sum_probs=37.8
Q ss_pred HHHHhhcCC-CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-cEEEeeEEEeecCC
Q 013000 113 LLSCMQNTE-FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGG 182 (451)
Q Consensus 113 L~~~~~~~g-~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~ 182 (451)
|.+.+.+.| .++++.+++|++++. .++++.|.+.++ ..+.+|.||.|+|.
T Consensus 113 l~~~a~~~G~~V~v~~~~~V~~I~~--------------------~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 113 LVDQARQQKFAVAVYESCQVTDLQI--------------------TNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHcCCeEEEEECCEEEEEEE--------------------eCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 344454444 378888999999976 446688887664 68999999999996
No 127
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.58 E-value=0.022 Score=59.73 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEE---EeCCCc--EEEeeEEEee
Q 013000 105 ENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGA 179 (451)
Q Consensus 105 ~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgA 179 (451)
.-..+.+.|.+.+++.++++++.++.|+++.. +++..+.| ...+|+ .+.|+.||.|
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVILA 190 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDNVLNRVFITDLLV-------------------DDNRIAGAVGFSVRENKFYVFKAKAVIVA 190 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-------------------eCCEEEEEEEEEccCCcEEEEECCEEEEC
Confidence 34578888988888776699999999999865 12222223 224554 6899999999
Q ss_pred cCCCCh
Q 013000 180 DGGKSR 185 (451)
Q Consensus 180 DG~~S~ 185 (451)
.|..+.
T Consensus 191 TGG~~~ 196 (608)
T PRK06854 191 TGGAAG 196 (608)
T ss_pred CCchhh
Confidence 998775
No 128
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.52 E-value=0.0082 Score=60.99 Aligned_cols=60 Identities=23% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+.+.|.+.+++.+ ++++.+ .++++.. +++..+.|.. +|..+.++.||.|.|..|..
T Consensus 120 ~~i~~~L~~~~~~~g-v~i~~~-~v~~l~~-------------------~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 120 KHIIKILYKHARELG-VNFIRG-FAEELAI-------------------KNGKAYGVFL-DGELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEEe-EeEEEEe-------------------eCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence 468888999988876 899876 7888754 1222333444 66789999999999999986
Q ss_pred hh
Q 013000 187 RE 188 (451)
Q Consensus 187 R~ 188 (451)
..
T Consensus 178 ~~ 179 (466)
T PRK08401 178 FK 179 (466)
T ss_pred CC
Confidence 54
No 129
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.42 E-value=0.034 Score=55.89 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEE-eCCCc--EEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~dg~--~~~adlvVgADG~~ 183 (451)
..+.+.|.+.+.+..+|+|+++++|+++.. +++..+.|. ..++. .+.|+-||.|.|..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~-------------------~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIE-------------------NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEe-------------------cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 467788888887654599999999999865 122223322 23444 68999999999986
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
+.
T Consensus 189 ~~ 190 (433)
T PRK06175 189 GG 190 (433)
T ss_pred cc
Confidence 64
No 130
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.41 E-value=0.29 Score=49.42 Aligned_cols=42 Identities=19% Similarity=0.098 Sum_probs=34.9
Q ss_pred eEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 124 KTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 124 ~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+|+++++|++++. .+..+.|.+.||+++.+|.||.|--.+..
T Consensus 235 ~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~~~~~d~vI~a~p~~~~ 276 (451)
T PRK11883 235 TIHKGTPVTKIDK--------------------SGDGYEIVLSNGGEIEADAVIVAVPHPVL 276 (451)
T ss_pred eEEeCCEEEEEEE--------------------cCCeEEEEECCCCEEEcCEEEECCCHHHH
Confidence 7999999999976 34568888899999999999999765433
No 131
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.39 E-value=0.018 Score=49.07 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 128 PSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 128 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
..+|+++.. .+++..|...||..+.+|.||-|.|.
T Consensus 121 ~~~V~~i~~--------------------~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 121 RAEVVDIRR--------------------DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred eeEEEEEEE--------------------cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 558999876 45667888899999999999999995
No 132
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=96.39 E-value=0.23 Score=51.08 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..|.+.|.+.+++.| ++|+.++.|+++.. +++..+.|...+|+++.||.||.|-+.+..+
T Consensus 219 ~~l~~al~~~~~~~G-~~i~~~~~V~~i~~-------------------~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLG-GELRLNAEVIRIET-------------------EGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCeEEEEEe-------------------eCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 678889999998887 89999999999976 1234467888899999999999988877776
Q ss_pred hhhh
Q 013000 187 RELA 190 (451)
Q Consensus 187 R~~l 190 (451)
.+.+
T Consensus 279 ~~l~ 282 (502)
T TIGR02734 279 RRLL 282 (502)
T ss_pred HHhc
Confidence 6655
No 133
>PLN02268 probable polyamine oxidase
Probab=96.39 E-value=0.035 Score=55.90 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=34.0
Q ss_pred ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 123 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 123 v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
++|++++.|+++.. .++.+.|++.+|+++.||.||.|--.
T Consensus 211 ~~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 211 LDIRLNHRVTKIVR--------------------RYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred CceeCCCeeEEEEE--------------------cCCcEEEEECCCcEEEcCEEEEecCH
Confidence 57999999999976 44668899999988999999999643
No 134
>PRK07121 hypothetical protein; Validated
Probab=96.38 E-value=0.045 Score=56.10 Aligned_cols=60 Identities=23% Similarity=0.274 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEe-eEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYA-KLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~a-dlvVgADG~ 182 (451)
..+.+.|.+.+++.+ ++|+++++|+++.. ++ ++..+.|... ++. .+.+ +.||.|.|.
T Consensus 177 ~~~~~~L~~~~~~~g-v~i~~~~~v~~l~~-----------~~-------~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALG-VQIRYDTRATRLIV-----------DD-------DGRVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-----------CC-------CCCEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 468888999998886 99999999999976 10 1233344443 333 5889 999999998
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
.+.
T Consensus 238 ~~~ 240 (492)
T PRK07121 238 FAM 240 (492)
T ss_pred cCc
Confidence 774
No 135
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.36 E-value=0.032 Score=58.24 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEE---EeCCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKL---DLSDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++|+.++.|+++.. +++..+.+ ...+|+ .+.|+.||.|+|
T Consensus 135 ~~i~~~L~~~~~~~g-i~i~~~t~v~~L~~-------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATG 194 (575)
T PRK05945 135 HAILHELVNNLRRYG-VTIYDEWYVMRLIL-------------------EDNQAKGVVMYHIADGRLEVVRAKAVMFATG 194 (575)
T ss_pred HHHHHHHHHHHhhCC-CEEEeCcEEEEEEE-------------------ECCEEEEEEEEEcCCCeEEEEECCEEEECCC
Confidence 467888888888765 99999999999865 11222223 334665 589999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 195 G~~~~ 199 (575)
T PRK05945 195 GYGRV 199 (575)
T ss_pred CCcCC
Confidence 99875
No 136
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.28 E-value=0.026 Score=55.69 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh--
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR-- 185 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~-- 185 (451)
.+...+.+.+.+.+ ++++++++|++++. .+..+.|.+.||+++.+|+||.|.|..+.
T Consensus 184 ~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~ 242 (377)
T PRK04965 184 EVSSRLQHRLTEMG-VHLLLKSQLQGLEK--------------------TDSGIRATLDSGRSIEVDAVIAAAGLRPNTA 242 (377)
T ss_pred HHHHHHHHHHHhCC-CEEEECCeEEEEEc--------------------cCCEEEEEEcCCcEEECCEEEECcCCCcchH
Confidence 45566677777776 99999999999965 33457788899999999999999999654
Q ss_pred hhhhhCCC
Q 013000 186 VRELAGFK 193 (451)
Q Consensus 186 vR~~l~~~ 193 (451)
+.+..+..
T Consensus 243 l~~~~gl~ 250 (377)
T PRK04965 243 LARRAGLA 250 (377)
T ss_pred HHHHCCCC
Confidence 44555544
No 137
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.18 E-value=0.025 Score=56.13 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=64.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCchhhhhhhcccccEEEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAWQYVQQHRHAYFDKMQVW 80 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~ 80 (451)
+||+.+|+.|++ .|++|+|||+++....... ............+..+..+++..|++.+-... .....+.
T Consensus 10 lAGleaA~~LAr----~G~~V~LiE~rp~~~~p~~--~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~----lg~l~~~ 79 (433)
T TIGR00137 10 LAGSEAAWQLAQ----AGVPVILYEMRPEKLTPAH--HTEDLAELVCSNSLGAKALDRAAGLLKTEMRQ----LSSLIIT 79 (433)
T ss_pred HHHHHHHHHHHh----CCCcEEEEeccccccCchh--hhhhhhhhcccccccchhHHhccCcHHHHHhh----cCeeeee
Confidence 489999999999 4999999999876421110 00000001122333445667777765432221 1112111
Q ss_pred eCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEE
Q 013000 81 DYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 134 (451)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~ 134 (451)
..+... . ....++.++|..+.+.|.+.+.+.+++++. ...|.++
T Consensus 80 ~ad~~~---I------pagg~~~vDR~lF~~~L~~qLe~~pnItvi-q~eV~dL 123 (433)
T TIGR00137 80 AADRHA---V------PAGGALAVDRGIFSRSLTEQVASHPNVTLI-REEVTEI 123 (433)
T ss_pred hhhhhC---C------CCCceEEehHHHHHHHHHHHHHhCCCcEEE-eeeeEEE
Confidence 111110 0 112246789999999999999888777766 4455555
No 138
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.18 E-value=0.16 Score=47.83 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=57.4
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccc--cccCCCeeEEEeCCCc--EEEeeEEEee
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATT--LFTKGHLAKLDLSDGT--SLYAKLVVGA 179 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~dg~--~~~adlvVgA 179 (451)
++--.|.+.+.+.+...| +.+..| +|++++...+.+..-+. +++++ -.+.=+++.|...|+. .++++++|-|
T Consensus 240 fdpw~LLs~~rrk~~~lG-v~f~~G-eV~~Fef~sqr~v~~~t--Dd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~a 315 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLG-VQFVKG-EVVGFEFESQRAVHAFT--DDGTAKLRAQRISGVVVRMNDALARPVKFALCVNA 315 (509)
T ss_pred cCHHHHHHHHHHHhhhhc-ceEecc-eEEEEEEecccceeeec--ccchhhhhhcccceeEEecCchhcCceeEEEEEec
Confidence 566788899999999997 888776 89988773332211111 11100 0012244677777764 7999999999
Q ss_pred cCCCCh-hhhhhCCC
Q 013000 180 DGGKSR-VRELAGFK 193 (451)
Q Consensus 180 DG~~S~-vR~~l~~~ 193 (451)
.|++|- |.+..|+.
T Consensus 316 AGa~s~QvArlAgIG 330 (509)
T KOG2853|consen 316 AGAWSGQVARLAGIG 330 (509)
T ss_pred cCccHHHHHHHhccC
Confidence 999997 67777665
No 139
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.17 E-value=0.53 Score=47.74 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=34.3
Q ss_pred ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 123 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 123 v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
++|+++++|+.|+. .+.+++|++.+|+++.||.||-|--..
T Consensus 238 ~~i~~~~~V~~I~~--------------------~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSH--------------------RGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEe--------------------cCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 58999999999976 445688888888889999999987754
No 140
>PRK07233 hypothetical protein; Provisional
Probab=96.12 E-value=0.6 Score=46.78 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
.|.+.|.+.+.+.| ++|+.+++|++++. .++.+.+...+|.++.+|.||.|-+.+.
T Consensus 199 ~l~~~l~~~l~~~g-~~v~~~~~V~~i~~--------------------~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 199 TLIDALAEAIEARG-GEIRLGTPVTSVVI--------------------DGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHHhcC-ceEEeCCCeeEEEE--------------------cCCceEEEEeCCceEECCEEEECCCHHH
Confidence 46777888887776 79999999999976 3345555556778899999999988753
No 141
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.07 E-value=0.0038 Score=44.88 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=24.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++||++|..|++ +|++|+|+|+.+.+
T Consensus 6 ~sGl~aA~~L~~----~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 6 ISGLAAAYYLAK----AGYRVTVFEKNDRL 31 (68)
T ss_dssp HHHHHHHHHHHH----TTSEEEEEESSSSS
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCccc
Confidence 589999999999 49999999999987
No 142
>PRK08275 putative oxidoreductase; Provisional
Probab=96.06 E-value=0.069 Score=55.56 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEE---eCCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+.+ ++|+.++.|+++.. .+ ++..+.|. ..+|+ .+.++.||.|.|
T Consensus 137 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~---------~~---------~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATG 197 (554)
T PRK08275 137 HDIKKVLYRQLKRAR-VLITNRIMATRLLT---------DA---------DGRVAGALGFDCRTGEFLVIRAKAVILCCG 197 (554)
T ss_pred HHHHHHHHHHHHHCC-CEEEcceEEEEEEE---------cC---------CCeEEEEEEEecCCCcEEEEECCEEEECCC
Confidence 367888999888776 99999999999976 00 11223333 34665 588999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 198 G~~~~ 202 (554)
T PRK08275 198 AAGRL 202 (554)
T ss_pred Ccccc
Confidence 98754
No 143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.03 E-value=0.049 Score=56.68 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
...+.+.+.+.+.+.+ ++++ .++|+++.. .+....|...+| .+.++.||-|.|.+..
T Consensus 59 ~~~l~~~l~~~~~~~g-v~~~-~~~V~~i~~--------------------~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 59 GPELMQEMRQQAQDFG-VKFL-QAEVLDVDF--------------------DGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHHHHHHHHHHcC-CEEe-ccEEEEEEe--------------------cCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 3466677777777776 8875 678888864 223456666555 5789999999999764
No 144
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.01 E-value=0.15 Score=52.92 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC-eeEEEe---CCCc--EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDL---SDGT--SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~---~dg~--~~~adlvVgAD 180 (451)
..+...|.+.+.+.+ ++|+.++.++++.. +++. .+.+.. .+|+ .+.|+-||.|.
T Consensus 134 ~~i~~~L~~~~~~~g-v~i~~~t~v~~Li~-------------------~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlAT 193 (543)
T PRK06263 134 HEMMMGLMEYLIKER-IKILEEVMAIKLIV-------------------DENREVIGAIFLDLRNGEIFPIYAKATILAT 193 (543)
T ss_pred HHHHHHHHHHHhcCC-CEEEeCeEeeeeEE-------------------eCCcEEEEEEEEECCCCcEEEEEcCcEEECC
Confidence 457778888887765 99999999999876 1222 333332 4664 68999999999
Q ss_pred CCCCh
Q 013000 181 GGKSR 185 (451)
Q Consensus 181 G~~S~ 185 (451)
|..+.
T Consensus 194 GG~~~ 198 (543)
T PRK06263 194 GGAGQ 198 (543)
T ss_pred CCCCC
Confidence 99875
No 145
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.94 E-value=0.054 Score=54.77 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=34.9
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
+.+.+.+.+.+.+ ++++.+ ++..+. ...+.+. .+|+++.+|.||-|.|.+.
T Consensus 92 ~~~~~~~~l~~~g-V~~~~g-~~~~v~----------------------~~~v~v~-~~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 92 LSGLYKRLLANAG-VELLEG-RARLVG----------------------PNTVEVL-QDGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHHHHHHHHhCC-cEEEEE-EEEEec----------------------CCEEEEe-cCCeEEEcCEEEEecCCcC
Confidence 4445555555555 898877 666552 2445554 4677899999999999764
No 146
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.89 E-value=0.05 Score=55.24 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++...|.+.+++.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||-|.|.+...
T Consensus 216 ~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 216 DEISDALSYHLRDSG-VTIRHNEEVEKVEG--------------------GDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEECCEEEEEEE--------------------eCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 456667777777776 99999999999865 334577778888899999999999988765
Q ss_pred h
Q 013000 187 R 187 (451)
Q Consensus 187 R 187 (451)
.
T Consensus 275 ~ 275 (461)
T PRK05249 275 D 275 (461)
T ss_pred c
Confidence 4
No 147
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.71 E-value=0.089 Score=55.62 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEeecCCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVGADGGK 183 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVgADG~~ 183 (451)
+.+.|.+.+.+.+ |+|++++.++++.. +++..+.|... +|. .+.|+.||-|.|..
T Consensus 172 l~~~L~~~~~~~g-V~i~~~t~v~~Li~-------------------d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 172 AYQALSRQIAAGT-VKMYTRTEMLDLVV-------------------VDGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHHHHHhcC-CEEEeceEEEEEEE-------------------eCCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 3466666776665 99999999999975 12233334442 454 68899999999998
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
+.+
T Consensus 232 g~~ 234 (640)
T PRK07573 232 GNV 234 (640)
T ss_pred ccC
Confidence 864
No 148
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=95.70 E-value=0.12 Score=54.30 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+.+ ++|+.++.++++.. +. ++..+.|.. .+|+ .+.|+.||.|.|
T Consensus 166 ~~i~~~L~~~a~~~g-v~i~~~~~~~~Li~-----------~~-------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYD-CNFFIEYFALDLIM-----------DE-------DGECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCC-CEEEeceEEEEEEE-----------CC-------CCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 478889999888876 99999999999864 00 123333433 4665 688999999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
..+.
T Consensus 227 G~~~ 230 (617)
T PTZ00139 227 GYGR 230 (617)
T ss_pred CCcc
Confidence 8765
No 149
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.66 E-value=0.21 Score=51.44 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--CCc--EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DGT--SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~--~~~adlvVgADG~ 182 (451)
..+.+.|.+.+. . +++|+.++.|+++.. +++..+.+... +|+ .+.|+.||-|.|.
T Consensus 130 ~~i~~~L~~~~~-~-gV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 130 KNLLEHLLQELV-P-HVTVVEQEMVIDLII-------------------ENGRCIGVLTKDSEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHHh-c-CCEEEECeEhhheee-------------------cCCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence 357778888775 3 499999999999865 12222334433 444 6889999999999
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
.+.
T Consensus 189 ~~~ 191 (510)
T PRK08071 189 CGG 191 (510)
T ss_pred Ccc
Confidence 875
No 150
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=95.59 E-value=0.13 Score=54.30 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+.+ ++|+.++.++++.. ++ ++..+.|.. .+|+ .+.|+-||.|+|
T Consensus 187 ~~i~~~L~~~a~~~g-v~i~~~~~~~~Li~-----------~~-------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 247 (635)
T PLN00128 187 HAMLHTLYGQAMKHN-TQFFVEYFALDLIM-----------DS-------DGACQGVIALNMEDGTLHRFRAHSTILATG 247 (635)
T ss_pred HHHHHHHHHHHHhCC-CEEEEeeEEEEEEE-----------cC-------CCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence 568888998888775 99999999999865 00 123344443 3564 689999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+..
T Consensus 248 G~g~~ 252 (635)
T PLN00128 248 GYGRA 252 (635)
T ss_pred CCccc
Confidence 98753
No 151
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.57 E-value=0.23 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++|+++|+.++++ |.+|+||||.+.+
T Consensus 17 ~aG~~aA~~aa~~----G~~v~llEk~~~~ 42 (557)
T PRK07843 17 AAGMVAALTAAHR----GLSTVVVEKAPHY 42 (557)
T ss_pred HHHHHHHHHHHHC----CCCEEEEeCCCCC
Confidence 4799999999994 9999999998765
No 152
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=95.56 E-value=0.22 Score=51.11 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc-----EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT-----SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~-----~~~adlvVgAD 180 (451)
..|.+-|.+.+++.| |+|+++++|+++.. +.+++ ......|... +|. ....|+||.|-
T Consensus 226 eSLV~PL~~~Le~~G-V~f~~~t~VtdL~~---------~~d~~------~~~VtgI~~~~~~~~~~I~l~~~DlVivTn 289 (576)
T PRK13977 226 ESLVLPLIKYLEDHG-VDFQYGTKVTDIDF---------DITGG------KKTATAIHLTRNGKEETIDLTEDDLVFVTN 289 (576)
T ss_pred hHHHHHHHHHHHhCC-CEEEeCCEEEEEEE---------cCCCC------ceEEEEEEEEeCCceeEEEecCCCEEEEeC
Confidence 567788899999997 99999999999976 10110 1122334332 332 35689999998
Q ss_pred CC
Q 013000 181 GG 182 (451)
Q Consensus 181 G~ 182 (451)
|.
T Consensus 290 Gs 291 (576)
T PRK13977 290 GS 291 (576)
T ss_pred Cc
Confidence 87
No 153
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.49 E-value=0.19 Score=52.00 Aligned_cols=69 Identities=17% Similarity=0.172 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.++++|+.++.++++..+ .+.+. +++..+.|.+ .+|+ .+.++.||.|+|
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~---------~~~~~----~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATG 204 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITS---------DKLGL----PGRRVVGAYVLNRNKERVETIRAKFVVLATG 204 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeec---------ccccC----CCCEEEEEEEEECCCCcEEEEecCeEEECCC
Confidence 4688889998887766999999999998651 00000 0123344544 3454 689999999999
Q ss_pred CCChhhh
Q 013000 182 GKSRVRE 188 (451)
Q Consensus 182 ~~S~vR~ 188 (451)
..+.+..
T Consensus 205 G~~~~~~ 211 (536)
T PRK09077 205 GASKVYL 211 (536)
T ss_pred CCCCCCC
Confidence 9997654
No 154
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.46 E-value=0.13 Score=51.30 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=42.1
Q ss_pred CcHHHHHHHhcCCCCCCC--cEEEEEcCCCCCCCCCC--CCCC--CCCCCceeeec-HHHHHHHHHCCCchhhhh
Q 013000 1 MVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNF--IKKE--DPPDPRVSTVT-PATISFFKEIGAWQYVQQ 68 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g--~~V~viEr~~~~~~~~~--~~~~--~~~~~~g~~l~-~~~~~~L~~lgl~~~~~~ 68 (451)
++||++|+.|+|+ + ++|+|+|+++.....-. -..+ .......+... +..++++++||+.+.+..
T Consensus 10 iaGLsaAy~L~k~----~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~ 80 (444)
T COG1232 10 IAGLSAAYRLQKA----GPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW 80 (444)
T ss_pred HHHHHHHHHHHHh----CCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence 5899999999995 7 99999999976632110 0000 00111122333 667889999999988873
No 155
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.44 E-value=0.042 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=22.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|..|+++ |++|+|+|+..
T Consensus 14 paG~~aA~~aa~~----G~~V~liE~~~ 37 (462)
T PRK06416 14 PGGYVAAIRAAQL----GLKVAIVEKEK 37 (462)
T ss_pred HHHHHHHHHHHHC----CCcEEEEeccc
Confidence 6899999999994 99999999876
No 156
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.43 E-value=0.53 Score=46.84 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe-CCCcEEEeeEEEeecCCCC
Q 013000 111 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 111 ~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~~~~adlvVgADG~~S 184 (451)
+.|.+.+++.+ ++|+++++|++|+. .++++.+.. .+|+++.||.||.|-....
T Consensus 201 ~~l~~~l~~~g-~~i~~~~~V~~i~~--------------------~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 201 EPARRWLDSRG-GEVRLGTRVRSIEA--------------------NAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHHHHHcC-CEEEcCCeeeEEEE--------------------cCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 44666666666 79999999999987 334454443 4778899999999866543
No 157
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.36 E-value=0.09 Score=53.56 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|++. |.+|+|||+..
T Consensus 14 paG~~aA~~aa~~----G~~v~lie~~~ 37 (472)
T PRK05976 14 PGGYVAAIRAGQL----GLKTALVEKGK 37 (472)
T ss_pred HHHHHHHHHHHhC----CCeEEEEEccC
Confidence 6899999999994 99999999863
No 158
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.35 E-value=0.17 Score=53.20 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhc---CCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEee
Q 013000 108 VLHSSLLSCMQN---TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVGA 179 (451)
Q Consensus 108 ~L~~~L~~~~~~---~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVgA 179 (451)
.+...|.+.+.+ .++|++++++.++++.. ++ ++..+.|... +|+ .+.|+.||.|
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~-----------dd-------~grV~GV~~~~~~~g~~~~i~AkaVVLA 191 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIV-----------VD-------GNRARGIIARNLVTGEIETHSADAVILA 191 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEE-----------cC-------CCEEEEEEEEECCCCcEEEEEcCEEEEC
Confidence 455555555433 24599999999999875 00 1233444442 454 6889999999
Q ss_pred cCCCChh
Q 013000 180 DGGKSRV 186 (451)
Q Consensus 180 DG~~S~v 186 (451)
.|..+.+
T Consensus 192 TGG~g~~ 198 (603)
T TIGR01811 192 TGGYGNV 198 (603)
T ss_pred CCCCcCc
Confidence 9997754
No 159
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.33 E-value=0.24 Score=51.57 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
+|||++|+.+++ +|.+|+||||.+.
T Consensus 14 ~AGl~AAl~Aa~----~G~~VivlEK~~~ 38 (549)
T PRK12834 14 LAGLVAAAELAD----AGKRVLLLDQENE 38 (549)
T ss_pred HHHHHHHHHHHH----CCCeEEEEeCCCC
Confidence 379999999999 4999999999983
No 160
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.24 E-value=0.21 Score=49.58 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC-ee-EEEeC--CC--cEEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LA-KLDLS--DG--TSLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v-~v~~~--dg--~~~~adlvVgAD 180 (451)
..+.+.|.+++++.++++|+.++.+.++.. +++ .+ .|... ++ .++.++.||-|.
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~--------------------~~~~~~~Gv~~~~~~~~~~~~~a~~vVLAT 192 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLII--------------------EDGIGVAGVLVLNRNGELGTFRAKAVVLAT 192 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhh--------------------cCCceEeEEEEecCCCeEEEEecCeEEEec
Confidence 578899999999988899999999999865 222 33 44443 33 378999999999
Q ss_pred CCCChhhh
Q 013000 181 GGKSRVRE 188 (451)
Q Consensus 181 G~~S~vR~ 188 (451)
|.-+.+=+
T Consensus 193 GG~g~ly~ 200 (518)
T COG0029 193 GGLGGLYA 200 (518)
T ss_pred CCCccccc
Confidence 98777643
No 161
>PLN02676 polyamine oxidase
Probab=95.24 E-value=1.4 Score=45.01 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhcC-C----CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNT-E----FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~-g----~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
..|.+.|.+.+... + ..+|++++.|++|.. .+.+|.|++.+|+++.||.||.|..
T Consensus 224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~--------------------~~~gV~V~~~~G~~~~a~~VIvtvP 283 (487)
T PLN02676 224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY--------------------SKNGVTVKTEDGSVYRAKYVIVSVS 283 (487)
T ss_pred HHHHHHHHhhcccccccccCCCceecCCEeeEEEE--------------------cCCcEEEEECCCCEEEeCEEEEccC
Confidence 44555566655322 1 257999999999987 4567999999999999999999998
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
.+..
T Consensus 284 l~vL 287 (487)
T PLN02676 284 LGVL 287 (487)
T ss_pred hHHh
Confidence 6544
No 162
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.19 E-value=0.44 Score=50.32 Aligned_cols=60 Identities=22% Similarity=0.148 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhcC--------C----CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEE---eCCCc--
Q 013000 107 KVLHSSLLSCMQNT--------E----FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD---LSDGT-- 169 (451)
Q Consensus 107 ~~L~~~L~~~~~~~--------g----~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~---~~dg~-- 169 (451)
..+...|.+.+.+. + +++++.++.|+++.. +++..+.+. ..+|+
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~-------------------~~g~v~Gv~~~~~~~g~~~ 198 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLK-------------------DGGRIAGAFGYWRESGRFV 198 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEE-------------------ECCEEEEEEEEECCCCeEE
Confidence 46777788877665 2 389999999999975 112222232 24564
Q ss_pred EEEeeEEEeecCCCCh
Q 013000 170 SLYAKLVVGADGGKSR 185 (451)
Q Consensus 170 ~~~adlvVgADG~~S~ 185 (451)
.+.|+.||-|.|..+.
T Consensus 199 ~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 199 LFEAPAVVLATGGIGK 214 (626)
T ss_pred EEEcCeEEECCCcccC
Confidence 6899999999998554
No 163
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.13 Score=48.88 Aligned_cols=56 Identities=21% Similarity=0.238 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
..|.+.+.+.+...+ +++.. ..|.+++. .+....|...+|+ ++++.||-|.|....
T Consensus 61 ~~L~~~~~~~a~~~~-~~~~~-~~v~~v~~--------------------~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 61 PELMEQMKEQAEKFG-VEIVE-DEVEKVEL--------------------EGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred HHHHHHHHHHHhhcC-eEEEE-EEEEEEee--------------------cCceEEEEECCCe-EEEeEEEECcCCccc
Confidence 578888888887665 78777 57777754 2227888888888 999999999998765
No 164
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.11 E-value=0.27 Score=51.26 Aligned_cols=60 Identities=15% Similarity=0.032 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++++.++.++++.. +++..+.|... +|+ .+.|+-||-|.|
T Consensus 136 ~~i~~~L~~~~~~~g-v~i~~~~~~~~Li~-------------------~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 136 MALLHTLFERTSGLN-VDFYNEWFSLDLVT-------------------DNKKVVGIVAMQMKTLTPFFFKTKAVVLATG 195 (566)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCcEEEEEEE-------------------ECCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence 357778888887775 99999999999976 12233445443 343 688999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 196 G~~~l 200 (566)
T PRK06452 196 GMGML 200 (566)
T ss_pred ccccc
Confidence 98854
No 165
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.11 E-value=0.22 Score=49.00 Aligned_cols=50 Identities=10% Similarity=0.063 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeec
Q 013000 111 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGAD 180 (451)
Q Consensus 111 ~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgAD 180 (451)
+.|.+.+...-+-.|.++++|..|.+ .+.+|+|++.+..++.+|++|.+=
T Consensus 209 d~la~Afa~ql~~~I~~~~~V~rI~q--------------------~~~gV~Vt~~~~~~~~ad~~i~ti 258 (450)
T COG1231 209 DQLAEAFAKQLGTRILLNEPVRRIDQ--------------------DGDGVTVTADDVGQYVADYVLVTI 258 (450)
T ss_pred HHHHHHHHHHhhceEEecCceeeEEE--------------------cCCeEEEEeCCcceEEecEEEEec
Confidence 44444443332368999999999988 678899999886789999999874
No 166
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.07 E-value=0.069 Score=52.74 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=52.7
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++-..+.+.|.+.+++ | ++++.++.|++++. +++.+.|...+|..+.||.||-|.|.
T Consensus 131 ~idp~~~~~~l~~~~~~-G-~~i~~~~~V~~i~~--------------------~~~~~~v~t~~g~~~~a~~vV~a~G~ 188 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-R-LTLHFNTEITSLER--------------------DGEGWQLLDANGEVIAASVVVLANGA 188 (381)
T ss_pred ccChHHHHHHHHhccCC-C-cEEEeCCEEEEEEE--------------------cCCeEEEEeCCCCEEEcCEEEEcCCc
Confidence 46778999999999988 6 99999999999976 34568888888888999999999999
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
+|.
T Consensus 189 ~~~ 191 (381)
T TIGR03197 189 QAG 191 (381)
T ss_pred ccc
Confidence 885
No 167
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.07 E-value=0.26 Score=51.62 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..|...|.+.+.+.+ ++++.++.++++.. + +++..+.|.. .+|+ .+.++-||.|.|
T Consensus 148 ~~l~~~L~~~~~~~g-i~i~~~~~~~~Li~-----------~-------~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 208 (591)
T PRK07057 148 HALLHTLYQQNVAAK-TQFFVEWMALDLIR-----------D-------ADGDVLGVTALEMETGDVYILEAKTTLFATG 208 (591)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCcEEEEEEE-----------c-------CCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence 468888888888776 89999999999875 0 0123344443 3554 688999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 209 G~~~~ 213 (591)
T PRK07057 209 GAGRI 213 (591)
T ss_pred Ccccc
Confidence 98864
No 168
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.05 E-value=1.3 Score=45.75 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=55.1
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++-..|.++|...+++.| +.|..++.|+++.. +.+....|...-|. +++..+|.|.|.
T Consensus 183 ~~DP~~lC~ala~~A~~~G-A~viE~cpV~~i~~-------------------~~~~~~gVeT~~G~-iet~~~VNaaGv 241 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALG-ALVIENCPVTGLHV-------------------ETDKFGGVETPHGS-IETECVVNAAGV 241 (856)
T ss_pred ccCHHHHHHHHHHHHHhcC-cEEEecCCcceEEe-------------------ecCCccceeccCcc-eecceEEechhH
Confidence 4677899999999999998 89999999999976 23344567766665 789999999999
Q ss_pred CCh-hhhhhCCCC
Q 013000 183 KSR-VRELAGFKT 194 (451)
Q Consensus 183 ~S~-vR~~l~~~~ 194 (451)
+.. |-+..+.+.
T Consensus 242 WAr~Vg~m~gvkv 254 (856)
T KOG2844|consen 242 WAREVGAMAGVKV 254 (856)
T ss_pred HHHHhhhhcCCcc
Confidence 765 444445443
No 169
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=94.99 E-value=0.35 Score=50.69 Aligned_cols=58 Identities=22% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe--CCCc-EEEe-eEEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT-SLYA-KLVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~-~~~a-dlvVgADG~~ 183 (451)
.|.+.|.+.+.+.| ++|+++++|+++.. +++..+.|.. .++. .+.+ +.||-|.|..
T Consensus 218 ~l~~~L~~~a~~~G-v~i~~~t~v~~l~~-------------------~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~ 277 (581)
T PRK06134 218 ALVARLLKSAEDLG-VRIWESAPARELLR-------------------EDGRVAGAVVETPGGLQEIRARKGVVLAAGGF 277 (581)
T ss_pred HHHHHHHHHHHhCC-CEEEcCCEEEEEEE-------------------eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCc
Confidence 46678888898887 99999999999875 1222223433 3443 5889 9888888887
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
+.
T Consensus 278 ~~ 279 (581)
T PRK06134 278 PH 279 (581)
T ss_pred cc
Confidence 75
No 170
>PRK06116 glutathione reductase; Validated
Probab=94.98 E-value=0.17 Score=51.22 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++.+.+.+.+++.+ ++++.+++|++++. +.++.+.|.+.+|+++.+|.||.|.|....+
T Consensus 208 ~~~~~~l~~~L~~~G-V~i~~~~~V~~i~~-------------------~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 208 PDIRETLVEEMEKKG-IRLHTNAVPKAVEK-------------------NADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHHHHHHHHHHHHCC-cEEECCCEEEEEEE-------------------cCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 356667777777776 99999999999965 1223377888899999999999999987654
Q ss_pred h
Q 013000 187 R 187 (451)
Q Consensus 187 R 187 (451)
.
T Consensus 268 ~ 268 (450)
T PRK06116 268 D 268 (450)
T ss_pred C
Confidence 3
No 171
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.95 E-value=0.23 Score=51.95 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+.+ ++|+.++.|+++.. +.+.+ .+..+.+.. .+|+ .+.|+-||.|.|
T Consensus 140 ~~i~~~L~~~~~~~g-v~i~~~~~v~~Li~---------~~~~~------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 203 (583)
T PRK08205 140 HMILQTLYQNCVKHG-VEFFNEFYVLDLLL---------TETPS------GPVAAGVVAYELATGEIHVFHAKAVVFATG 203 (583)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCCEEEEEEe---------cCCcc------CCcEEEEEEEEcCCCeEEEEEeCeEEECCC
Confidence 467888999888776 99999999999875 10000 023333432 4564 588999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 204 G~~~~ 208 (583)
T PRK08205 204 GSGRV 208 (583)
T ss_pred CCccc
Confidence 98864
No 172
>PRK14694 putative mercuric reductase; Provisional
Probab=94.94 E-value=0.16 Score=51.71 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=21.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|+++ |.+|+|||+..
T Consensus 16 ~aG~~aA~~l~~~----g~~v~lie~~~ 39 (468)
T PRK14694 16 GSAMAAALKATER----GARVTLIERGT 39 (468)
T ss_pred HHHHHHHHHHHhC----CCcEEEEEccc
Confidence 6899999999995 99999999974
No 173
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.87 E-value=0.15 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=22.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||+++|..|++. |.+|+|||+.+..
T Consensus 14 paG~~aA~~aa~~----G~~V~lie~~~~~ 39 (471)
T PRK06467 14 PAGYSAAFRAADL----GLETVCVERYSTL 39 (471)
T ss_pred HHHHHHHHHHHHC----CCcEEEEecCCcc
Confidence 6899999999994 9999999997543
No 174
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.78 E-value=0.14 Score=51.79 Aligned_cols=47 Identities=9% Similarity=0.071 Sum_probs=33.8
Q ss_pred hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe-CCCcEEE--eeEEEeecCCCCh
Q 013000 118 QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGTSLY--AKLVVGADGGKSR 185 (451)
Q Consensus 118 ~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~~~~--adlvVgADG~~S~ 185 (451)
.+.+ ++++.+++|+++.. ....+.+.- .+|.++. +|.||-|.|.+..
T Consensus 67 ~~~g-v~~~~~~~V~~id~--------------------~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~ 116 (444)
T PRK09564 67 IKSG-IDVKTEHEVVKVDA--------------------KNKTITVKNLKTGSIFNDTYDKLMIATGARPI 116 (444)
T ss_pred HHCC-CeEEecCEEEEEEC--------------------CCCEEEEEECCCCCEEEecCCEEEECCCCCCC
Confidence 3344 89999999999965 335566653 2355666 9999999998654
No 175
>PRK10262 thioredoxin reductase; Provisional
Probab=94.77 E-value=0.19 Score=48.34 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
..+.+.+.+.+...+ ++++.+ +|++++. ..+.+.++..++ .+.+|.||-|.|.+.
T Consensus 63 ~~~~~~~~~~~~~~~-~~~~~~-~v~~v~~--------------------~~~~~~v~~~~~-~~~~d~vilAtG~~~ 117 (321)
T PRK10262 63 PLLMERMHEHATKFE-TEIIFD-HINKVDL--------------------QNRPFRLTGDSG-EYTCDALIIATGASA 117 (321)
T ss_pred HHHHHHHHHHHHHCC-CEEEee-EEEEEEe--------------------cCCeEEEEecCC-EEEECEEEECCCCCC
Confidence 455666666666665 567665 5667754 334556654433 689999999999875
No 176
>PLN02976 amine oxidase
Probab=94.76 E-value=1.9 Score=49.10 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=47.7
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcCCCC-ChHHHHHHHHHhhchhhHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVGADI-GEASLLKKYEAERKPANIVMMAVLDGF 401 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~~~~-~~~~~l~~Ye~~r~~~~~~~~~~s~~~ 401 (451)
.++|++.|+|.+...|-+-+| |++++...|+.|...+..+.++ ...++|+.+++........+-.+.+.+
T Consensus 1150 ggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 1220 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESERDEVRDITKRL 1220 (1713)
T ss_pred CCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhhHHHHHHHHHhh
Confidence 467999999998877766555 6888998888888877665442 346778888765555433333333333
No 177
>PLN02507 glutathione reductase
Probab=94.75 E-value=0.08 Score=54.29 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCCh
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 185 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 185 (451)
+...+.+.+.+.+ ++++.+ ++..+ +...+.|+..+|+ ++.+|.||-|.|.+..
T Consensus 126 ~~~~~~~~l~~~g-V~~i~g-~a~~v----------------------d~~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 126 LNGIYKRLLANAG-VKLYEG-EGKIV----------------------GPNEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred HHHHHHHHHHhCC-cEEEEE-EEEEe----------------------cCCEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 3333444444444 888877 55555 3367888888886 5889999999998654
No 178
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.72 E-value=2.3 Score=43.55 Aligned_cols=57 Identities=16% Similarity=0.182 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-----cEEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-----~~~~adlvVgADG 181 (451)
..|-+.|.+.+++.| ++|+.+++|++|.. +++....|...+| +++.||.||.+-.
T Consensus 232 ~~l~~aL~~~~~~~G-~~i~~~~~V~~I~~-------------------~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~ 291 (492)
T TIGR02733 232 QTLSDRLVEALKRDG-GNLLTGQRVTAIHT-------------------KGGRAGWVVVVDSRKQEDLNVKADDVVANLP 291 (492)
T ss_pred HHHHHHHHHHHHhcC-CEEeCCceEEEEEE-------------------eCCeEEEEEEecCCCCceEEEECCEEEECCC
Confidence 568888888888876 79999999999976 1222233444444 5789999998766
Q ss_pred CC
Q 013000 182 GK 183 (451)
Q Consensus 182 ~~ 183 (451)
.+
T Consensus 292 ~~ 293 (492)
T TIGR02733 292 PQ 293 (492)
T ss_pred HH
Confidence 64
No 179
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.72 E-value=0.17 Score=51.47 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC---cEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~adlvVgADG~~ 183 (451)
..+...+.+.+.+.+ ++++.+++|++++. .++.+.+.+.+| +++.+|.||-|-|..
T Consensus 213 ~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 213 KEISKLAERALKKRG-IKIKTGAKAKKVEQ--------------------TDDGVTVTLEDGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEEeCCeeEEEEeCEEEEeeCCc
Confidence 456667777777776 99999999999965 334677777766 679999999999987
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
...
T Consensus 272 p~~ 274 (462)
T PRK06416 272 PNT 274 (462)
T ss_pred cCC
Confidence 654
No 180
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.71 E-value=0.52 Score=46.38 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
.....-+.+.+.++| ++|+|+++|.+++. ++++...|...+|.++.+|.||-|=|..+.
T Consensus 173 ~~vvkni~~~l~~~G-~ei~f~t~VeDi~~-------------------~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~ 231 (486)
T COG2509 173 PKVVKNIREYLESLG-GEIRFNTEVEDIEI-------------------EDNEVLGVKLTKGEEIEADYVVLAPGRSGR 231 (486)
T ss_pred HHHHHHHHHHHHhcC-cEEEeeeEEEEEEe-------------------cCCceEEEEccCCcEEecCEEEEccCcchH
Confidence 456667888899998 89999999999987 233456788889999999999999998665
No 181
>PRK12839 hypothetical protein; Provisional
Probab=94.71 E-value=0.16 Score=53.00 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe--CCCc-EEEe-eEEEeecC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT-SLYA-KLVVGADG 181 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~-~~~a-dlvVgADG 181 (451)
-..|...|.+.+.+.+ ++|+.++.|+++.. .+ ++..+.|.. .+|+ .+.+ +-||-|.|
T Consensus 213 g~~l~~~L~~~a~~~G-v~i~~~t~v~~Li~---------~~---------~g~V~GV~~~~~~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 213 GTALTGRLLRSADDLG-VDLRVSTSATSLTT---------DK---------NGRVTGVRVQGPDGAVTVEATRGVVLATG 273 (572)
T ss_pred HHHHHHHHHHHHHHCC-CEEEcCCEEEEEEE---------CC---------CCcEEEEEEEeCCCcEEEEeCCEEEEcCC
Confidence 3456778888888886 99999999999865 00 123334433 4554 3444 77777777
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
..+.
T Consensus 274 Gf~~ 277 (572)
T PRK12839 274 GFPN 277 (572)
T ss_pred Cccc
Confidence 7665
No 182
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.70 E-value=0.046 Score=60.12 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=29.8
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||++.. ..=+..|+.++..+|..|...+.-
T Consensus 592 ~pgVFAaGD~~~G-----~~~vv~Ai~eGr~AA~~I~~~L~~ 628 (944)
T PRK12779 592 IKGVYSGGDAARG-----GSTAIRAAGDGQAAAKEIVGEIPF 628 (944)
T ss_pred CCCEEEEEcCCCC-----hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4689999999852 224678999999999999988764
No 183
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.66 E-value=0.13 Score=52.25 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||+++|+.|+++ |.+|+||||.+..
T Consensus 15 paG~~aA~~la~~----G~~v~liE~~~~~ 40 (461)
T PRK05249 15 PAGEGAAMQAAKL----GKRVAVIERYRNV 40 (461)
T ss_pred HHHHHHHHHHHhC----CCEEEEEeccccc
Confidence 6899999999994 9999999997544
No 184
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.62 E-value=0.15 Score=51.80 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
|||+++|..|++ .|.+|+||||.+.
T Consensus 10 ~aG~~aA~~~~~----~g~~V~lie~~~~ 34 (458)
T PRK06912 10 PAGYVAAITAAQ----NGKNVTLIDEADL 34 (458)
T ss_pred HHHHHHHHHHHh----CCCcEEEEECCcc
Confidence 689999999999 4999999999764
No 185
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.56 E-value=0.38 Score=49.94 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe-CCCc--EEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~adlvVgADG~~ 183 (451)
..+...|.+.+.+..+++|+.++.++++.. +.+ ++..+.|.. .+|. .+.|+-||-|.|..
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~---------~~~--------~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWL---------EPE--------TGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhhee---------cCC--------CCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 467788888887654599999999999875 000 122233332 3554 47899999999986
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
+.
T Consensus 197 ~~ 198 (553)
T PRK07395 197 GQ 198 (553)
T ss_pred cc
Confidence 54
No 186
>PLN02815 L-aspartate oxidase
Probab=94.53 E-value=0.42 Score=50.02 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC---eeEEEe---CCCc--EEEeeEEEe
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH---LAKLDL---SDGT--SLYAKLVVG 178 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~v~~---~dg~--~~~adlvVg 178 (451)
..+...|.+.+.+.++++|+.++.++++.. ++ ++. .+.+.+ .+|+ .+.|+-||-
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~-----------~~-------~g~~~~v~Gv~~~~~~~g~~~~i~AkaVIL 216 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLT-----------SQ-------DGGSIVCHGADVLDTRTGEVVRFISKVTLL 216 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeee-----------ec-------CCCccEEEEEEEEEcCCCeEEEEEeceEEE
Confidence 457788888887765699999999999875 10 111 344443 3564 578999999
Q ss_pred ecCCCCh
Q 013000 179 ADGGKSR 185 (451)
Q Consensus 179 ADG~~S~ 185 (451)
|.|..+.
T Consensus 217 ATGG~g~ 223 (594)
T PLN02815 217 ASGGAGH 223 (594)
T ss_pred cCCccee
Confidence 9998775
No 187
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.49 E-value=0.13 Score=52.23 Aligned_cols=55 Identities=22% Similarity=0.250 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCCh
Q 013000 111 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKSR 185 (451)
Q Consensus 111 ~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S~ 185 (451)
..+.+.+.+.+ |+++.+ +++.+.. . ..+..+.|...+|+ ++.+|.||-|.|.+..
T Consensus 96 ~~~~~~l~~~g-V~~~~g-~~~~~~~-----------~-------~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 96 ADIRARLEREG-VRVIAG-RGRLIDP-----------G-------LGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHCC-CEEEEE-EEEEeec-----------c-------cCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 34555555555 899887 4444320 0 03466888877876 7999999999999764
No 188
>PRK06116 glutathione reductase; Validated
Probab=94.38 E-value=0.16 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|+++ |++|+|||+..
T Consensus 14 paG~~aA~~~a~~----G~~V~liE~~~ 37 (450)
T PRK06116 14 SGGIASANRAAMY----GAKVALIEAKR 37 (450)
T ss_pred HHHHHHHHHHHHC----CCeEEEEeccc
Confidence 7899999999994 99999999863
No 189
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.32 E-value=0.23 Score=50.37 Aligned_cols=60 Identities=13% Similarity=0.186 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC--cEEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~~~~adlvVgADG~~S 184 (451)
..+.+.+.+.+++.+ ++++.+++|++++. .++.+.+.+.+| .++.+|.||-|.|...
T Consensus 211 ~~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKG-VKILTNTKVTAVEK--------------------NDDQVVYENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence 456667777787776 99999999999865 335577777777 4799999999999877
Q ss_pred hhh
Q 013000 185 RVR 187 (451)
Q Consensus 185 ~vR 187 (451)
.+.
T Consensus 270 ~~~ 272 (461)
T TIGR01350 270 NTE 272 (461)
T ss_pred cCC
Confidence 654
No 190
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=94.30 E-value=0.091 Score=54.92 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--CCc-EEEee-EEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DGT-SLYAK-LVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~-~~~ad-lvVgADG~~ 183 (451)
.|...|.+.+.+.+ ++|+.++.|+++.. +++..+.|... ++. .+.++ -||-|.|..
T Consensus 215 ~l~~~L~~~~~~~G-v~i~~~~~v~~l~~-------------------~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~ 274 (574)
T PRK12842 215 ALAARLAKSALDLG-IPILTGTPARELLT-------------------EGGRVVGARVIDAGGERRITARRGVVLACGGF 274 (574)
T ss_pred HHHHHHHHHHHhCC-CEEEeCCEEEEEEe-------------------eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCc
Confidence 46677888888876 99999999999976 12222334443 343 47785 688888887
Q ss_pred C
Q 013000 184 S 184 (451)
Q Consensus 184 S 184 (451)
+
T Consensus 275 ~ 275 (574)
T PRK12842 275 S 275 (574)
T ss_pred c
Confidence 6
No 191
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.28 E-value=0.48 Score=48.80 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~adlvVgADG~~ 183 (451)
..+...|.+.+.+.++++++.++.|+++.. +++..+.+... ++. .+.|+.||.|.|..
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLV-------------------DDGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheee-------------------cCCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 467888888887764599999999999865 12233344433 232 68899999999997
Q ss_pred Ch
Q 013000 184 SR 185 (451)
Q Consensus 184 S~ 185 (451)
+.
T Consensus 197 ~~ 198 (513)
T PRK07512 197 GG 198 (513)
T ss_pred cC
Confidence 65
No 192
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.27 E-value=0.31 Score=49.55 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=46.5
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.+...+.+.+.+.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||-|.|......
T Consensus 219 ~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 219 DAAEVLEEVFARRG-MTVLKRSRAESVER--------------------TGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHHCC-cEEEcCCEEEEEEE--------------------eCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 45566677777776 99999999999965 3345778888899999999999999876643
No 193
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.26 E-value=0.14 Score=53.66 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccC-CCeeEEEe---CCCc--EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTK-GHLAKLDL---SDGT--SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~~---~dg~--~~~adlvVgAD 180 (451)
..+...|.+.+.+.+ ++|+.++.++++.. ++ +..+.|.. .+|+ .+.|+-||-|.
T Consensus 149 ~~i~~~L~~~~~~~g-i~i~~~~~v~~Li~-------------------~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLAT 208 (598)
T PRK09078 149 HAILHTLYQQSLKHN-AEFFIEYFALDLIM-------------------DDGGVCRGVVAWNLDDGTLHRFRAHMVVLAT 208 (598)
T ss_pred HHHHHHHHHHHhhcC-CEEEEeEEEEEEEE-------------------cCCCEEEEEEEEECCCCcEEEEEcCEEEECC
Confidence 368888888888776 99999999999876 11 22344433 4665 68899999999
Q ss_pred CCCCh
Q 013000 181 GGKSR 185 (451)
Q Consensus 181 G~~S~ 185 (451)
|..+.
T Consensus 209 GG~~~ 213 (598)
T PRK09078 209 GGYGR 213 (598)
T ss_pred CCCcc
Confidence 99775
No 194
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=94.23 E-value=0.031 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
|||+++|..|++ .|++|+|+|+.+.
T Consensus 9 ~aGl~aA~~l~~----~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 9 PAGLSAALELAR----PGAKVLIIEKSPG 33 (201)
T ss_dssp HHHHHHHHHHHH----TTSEEEEESSSSH
T ss_pred HHHHHHHHHHhc----CCCeEEEEecccc
Confidence 589999999998 5999999988774
No 195
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=94.19 E-value=0.25 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.5
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||++|+.+++ +|.+|+||||.+..
T Consensus 17 aGl~aA~~aa~----~G~~V~vlEk~~~~ 41 (513)
T PRK12837 17 GGVAGAYTAAR----EGLSVALVEATDKF 41 (513)
T ss_pred HHHHHHHHHHH----CCCcEEEEecCCCC
Confidence 69999999999 59999999999764
No 196
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.05 E-value=0.2 Score=52.07 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe-CCCc--EEEee-EEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL-SDGT--SLYAK-LVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~dg~--~~~ad-lvVgADG~ 182 (451)
..|...|.+.+.+.+ ++|+++++|+++.. +++..+.|.. .+|+ .+.++ -||-|.|.
T Consensus 208 ~~l~~~l~~~~~~~g-v~i~~~~~v~~Li~-------------------~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG 267 (557)
T PRK12844 208 AALIGRMLEAALAAG-VPLWTNTPLTELIV-------------------EDGRVVGVVVVRDGREVLIRARRGVLLASGG 267 (557)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE-------------------eCCEEEEEEEEECCeEEEEEecceEEEecCC
Confidence 356777888888876 99999999999976 1223333433 2454 57784 56666666
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
.+.
T Consensus 268 ~~~ 270 (557)
T PRK12844 268 FGH 270 (557)
T ss_pred ccC
Confidence 554
No 197
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.99 E-value=0.28 Score=49.47 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
|||+++|+.|+++ |++|+|||+.+.
T Consensus 13 paGl~aA~~la~~----g~~V~lie~~~~ 37 (441)
T PRK08010 13 KAGKTLAVTLAKA----GWRVALIEQSNA 37 (441)
T ss_pred HhHHHHHHHHHHC----CCeEEEEcCCCC
Confidence 6899999999994 999999999753
No 198
>PRK13748 putative mercuric reductase; Provisional
Probab=93.99 E-value=0.33 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|..|+++ |.+|+|||+..
T Consensus 108 paG~~aA~~~~~~----G~~v~lie~~~ 131 (561)
T PRK13748 108 GAAMAAALKAVEQ----GARVTLIERGT 131 (561)
T ss_pred HHHHHHHHHHHhC----CCeEEEEecCc
Confidence 6899999999995 99999999973
No 199
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.96 E-value=0.59 Score=49.00 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCC---CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CCc--EEEeeEEEe
Q 013000 107 KVLHSSLLSCMQNTE---FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DGT--SLYAKLVVG 178 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g---~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg~--~~~adlvVg 178 (451)
..+...|.+.+.+.+ ++++..++.++++.. + +++..+.|... +|+ .+.|+-||-
T Consensus 133 ~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~-----------~-------~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 194 (589)
T PRK08641 133 QQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVL-----------D-------DEGVCRGIVAQDLFTMEIESFPADAVIM 194 (589)
T ss_pred HHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEE-----------C-------CCCEEEEEEEEECCCCcEEEEECCEEEE
Confidence 457777887776543 378999999999875 0 01234445443 344 578999999
Q ss_pred ecCCCChh
Q 013000 179 ADGGKSRV 186 (451)
Q Consensus 179 ADG~~S~v 186 (451)
|.|..+.+
T Consensus 195 ATGG~~~~ 202 (589)
T PRK08641 195 ATGGPGII 202 (589)
T ss_pred CCCCCcCC
Confidence 99998863
No 200
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.83 E-value=0.3 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|++. |++|+|+||..
T Consensus 12 paG~~aA~~aa~~----G~~V~liE~~~ 35 (450)
T TIGR01421 12 SGGIASARRAAEH----GAKALLVEAKK 35 (450)
T ss_pred HHHHHHHHHHHHC----CCcEEEecccc
Confidence 7899999999994 99999999964
No 201
>PRK12831 putative oxidoreductase; Provisional
Probab=93.70 E-value=0.07 Score=54.15 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.7
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+.+||+++. | ..+..|+.++..+|..|.+.+.
T Consensus 426 ~pgVfAaGD~~~g--~---~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 426 KEGVFAGGDAVTG--A---ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred CCCEEEeCCCCCC--c---hHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999853 1 2467899999999999988764
No 202
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.65 E-value=0.7 Score=48.45 Aligned_cols=61 Identities=16% Similarity=0.173 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..|...|.+.+.+.+ ++++.++.++++.. ++ ++..+.|.. .+|+ .+.|+-||-|.|
T Consensus 143 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~-----------~~-------~g~v~Gv~~~~~~~g~~~~i~AkaVILATG 203 (588)
T PRK08958 143 HALLHTLYQQNLKNH-TTIFSEWYALDLVK-----------NQ-------DGAVVGCTAICIETGEVVYFKARATVLATG 203 (588)
T ss_pred HHHHHHHHHHhhhcC-CEEEeCcEEEEEEE-----------CC-------CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 467888888887765 89999999999875 10 123344443 4665 588999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 204 G~~~~ 208 (588)
T PRK08958 204 GAGRI 208 (588)
T ss_pred Ccccc
Confidence 98864
No 203
>PRK06370 mercuric reductase; Validated
Probab=93.60 E-value=0.11 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|++ .|++|+|||+..
T Consensus 15 paG~~aA~~aa~----~G~~v~lie~~~ 38 (463)
T PRK06370 15 QAGPPLAARAAG----LGMKVALIERGL 38 (463)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCc
Confidence 789999999999 499999999874
No 204
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=93.54 E-value=0.43 Score=44.61 Aligned_cols=72 Identities=17% Similarity=0.010 Sum_probs=51.9
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
.++...+...+-+..+..+ -++..+-++..+.+ +++ ...+..+.|.-.-|++++...||.|.|.
T Consensus 192 IvD~~~v~ls~~edF~~~g-g~i~~n~~l~g~~~---------n~~------~~~~Ypivv~ngk~ee~r~~~~vtc~gl 255 (453)
T KOG2665|consen 192 IVDWGSVTLSFGEDFDFMG-GRIYTNFRLQGIAQ---------NKE------ATFSYPIVVLNGKGEEKRTKNVVTCAGL 255 (453)
T ss_pred eeehHHHHHHHHHHHHHhc-ccccccceeccchh---------ccC------CCCCCceEEecCccceeEEeEEEEeccc
Confidence 4777888888888888887 58889999999865 111 1233455555444679999999999999
Q ss_pred CChhhhhh
Q 013000 183 KSRVRELA 190 (451)
Q Consensus 183 ~S~vR~~l 190 (451)
.|---..+
T Consensus 256 ~sdr~aa~ 263 (453)
T KOG2665|consen 256 QSDRCAAL 263 (453)
T ss_pred cHhHHHHH
Confidence 88754444
No 205
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=93.44 E-value=0.14 Score=53.62 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEe-eEEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYA-KLVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~a-dlvVgADG~~ 183 (451)
.|...|.+.+++.+ ++++.+++|+++.. +++..+.|... +|+ .+.+ +-||-|.|..
T Consensus 222 ~l~~aL~~~~~~~G-v~i~~~t~v~~Li~-------------------~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~ 281 (578)
T PRK12843 222 ALIGRLLYSLRARG-VRILTQTDVESLET-------------------DHGRVIGATVVQGGVRRRIRARGGVVLATGGF 281 (578)
T ss_pred HHHHHHHHHHHhCC-CEEEeCCEEEEEEe-------------------eCCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence 46778888888886 99999999999865 12233334443 343 5776 6888999997
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
+.-
T Consensus 282 ~~n 284 (578)
T PRK12843 282 NRH 284 (578)
T ss_pred ccC
Confidence 774
No 206
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=93.31 E-value=0.88 Score=51.72 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcC--CCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-----CCc--EEEeeEEEe
Q 013000 108 VLHSSLLSCMQNT--EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-----DGT--SLYAKLVVG 178 (451)
Q Consensus 108 ~L~~~L~~~~~~~--g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-----dg~--~~~adlvVg 178 (451)
.+...|.+.+.+. .+++|+++++++++..+.... + ++ ...+..+.|... +|+ .+.|+-||-
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~------~-~G---~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVIL 614 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSAR------P-DG---VREIRVTGVRYKQASDASGQVMDLLADAVIL 614 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcc------c-CC---CccceEEEEEEEecccCCCcEEEEEeceEEE
Confidence 4556666666542 349999999999997610000 0 00 000123444443 564 688999999
Q ss_pred ecCCCCh
Q 013000 179 ADGGKSR 185 (451)
Q Consensus 179 ADG~~S~ 185 (451)
|.|..+.
T Consensus 615 ATGGf~~ 621 (1167)
T PTZ00306 615 ATGGFSN 621 (1167)
T ss_pred ecCCccc
Confidence 9999774
No 207
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.27 E-value=1.8 Score=44.66 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=53.4
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCe-eEEEeC---CCc--EEEeeEE
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHL-AKLDLS---DGT--SLYAKLV 176 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~---dg~--~~~adlv 176 (451)
.++=..|...|.+.+.+.| ++|+.+++|++++. .++. +.|++. +|+ ++.|+.|
T Consensus 124 ~vdp~~l~~al~~~A~~~G-a~i~~~t~V~~i~~--------------------~~~~v~gv~v~~~~~g~~~~i~a~~V 182 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHG-ARIFTYTKVTGLIR--------------------EGGRVTGVKVEDHKTGEEERIEAQVV 182 (516)
T ss_pred EECHHHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------ECCEEEEEEEEEcCCCcEEEEEcCEE
Confidence 5777889999999999997 89999999999976 2233 334442 343 7999999
Q ss_pred EeecCCCCh-hhhhhCCC
Q 013000 177 VGADGGKSR-VRELAGFK 193 (451)
Q Consensus 177 VgADG~~S~-vR~~l~~~ 193 (451)
|-|-|.+|. +.+.++..
T Consensus 183 VnAaG~wa~~l~~~~g~~ 200 (516)
T TIGR03377 183 INAAGIWAGRIAEYAGLD 200 (516)
T ss_pred EECCCcchHHHHHhcCCC
Confidence 999999887 55555653
No 208
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=93.24 E-value=0.25 Score=45.48 Aligned_cols=64 Identities=13% Similarity=0.093 Sum_probs=46.3
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---C-CcEEEeeEEE
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---D-GTSLYAKLVV 177 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---d-g~~~~adlvV 177 (451)
-+++-..|-+.+++.+.+.++|++.+| +|.++.. ++.....+..+ + ....+.+.+|
T Consensus 142 aqvhP~lFc~~i~sea~k~~~V~lv~G-kv~ev~d-------------------Ek~r~n~v~~ae~~~ti~~~d~~~iv 201 (380)
T KOG2852|consen 142 AQVHPYLFCHFILSEAEKRGGVKLVFG-KVKEVSD-------------------EKHRINSVPKAEAEDTIIKADVHKIV 201 (380)
T ss_pred ceeCHHHHHHHHHHHHHhhcCeEEEEe-eeEEeec-------------------ccccccccchhhhcCceEEeeeeEEE
Confidence 468889999999999999999999999 7777742 01121222222 2 3467889999
Q ss_pred eecCCCCh
Q 013000 178 GADGGKSR 185 (451)
Q Consensus 178 gADG~~S~ 185 (451)
-|-|.++.
T Consensus 202 vsaGPWTs 209 (380)
T KOG2852|consen 202 VSAGPWTS 209 (380)
T ss_pred EecCCCch
Confidence 99999876
No 209
>PRK07846 mycothione reductase; Reviewed
Probab=93.20 E-value=0.59 Score=47.30 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
+.+.|.+.. +.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||.|.|.....
T Consensus 209 ~~~~l~~l~-~~~-v~i~~~~~v~~i~~--------------------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 209 ISERFTELA-SKR-WDVRLGRNVVGVSQ--------------------DGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred HHHHHHHHH-hcC-eEEEeCCEEEEEEE--------------------cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 344444333 344 99999999999965 334677888889899999999999987654
No 210
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=92.95 E-value=9.1 Score=39.03 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=40.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCce----eeecHHHHHHHHHCCCchhhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRV----STVTPATISFFKEIGAWQYVQ 67 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~--~~~~~~~~~g----~~l~~~~~~~L~~lgl~~~~~ 67 (451)
++||++|+.|++ +|++|+|+|+++.+.....- ..+...-..| ....++..++++++|+.+++.
T Consensus 9 ~aGl~aA~~L~~----~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~ 77 (474)
T TIGR02732 9 LAGLSTAVELVD----AGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLL 77 (474)
T ss_pred HHHHHHHHHHHH----CCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccccc
Confidence 589999999999 59999999999877422110 0000000011 123466788889998876654
No 211
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=92.89 E-value=0.89 Score=50.80 Aligned_cols=58 Identities=9% Similarity=-0.021 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC--eeEEEeC--CCcEEEeeEEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLS--DGTSLYAKLVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~--dg~~~~adlvVgADG~~ 183 (451)
.+...+.+.+++.+ |+++.++.|+.++. .+. .|.+... +++++.+|.|+-+-|..
T Consensus 352 ~~~~~l~~~L~~~G-V~i~~~~~v~~i~g--------------------~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~ 410 (985)
T TIGR01372 352 DVSPEARAEARELG-IEVLTGHVVAATEG--------------------GKRVSGVAVARNGGAGQRLEADALAVSGGWT 410 (985)
T ss_pred chhHHHHHHHHHcC-CEEEcCCeEEEEec--------------------CCcEEEEEEEecCCceEEEECCEEEEcCCcC
Confidence 34455666677776 99999999998853 222 2344322 44589999999999986
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
..+
T Consensus 411 Pnt 413 (985)
T TIGR01372 411 PVV 413 (985)
T ss_pred chh
Confidence 654
No 212
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=92.72 E-value=0.8 Score=47.71 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEe-eEEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYA-KLVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~a-dlvVgADG~~ 183 (451)
.|...|.+.+.+.+ ++|+++++|+++.. +++..+.|... +|. .+.+ +-||-|.|..
T Consensus 218 ~l~~~L~~~~~~~G-v~i~~~t~v~~Li~-------------------~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 218 ALAAGLFAGVLRAG-IPIWTETSLVRLTD-------------------DGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred HHHHHHHHHHHHCC-CEEEecCEeeEEEe-------------------cCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 35567778788776 99999999999875 12233344332 443 4566 5788899987
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
+.-
T Consensus 278 ~~n 280 (564)
T PRK12845 278 DHD 280 (564)
T ss_pred ccc
Confidence 764
No 213
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=92.71 E-value=0.24 Score=50.35 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=24.8
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
..+|+.+||++.. | .-+..|+..|..+|+.|..
T Consensus 299 ~~~IyaiGD~~~~--~---~~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 299 VPGIYAIGDVIGG--P---MLAHVASHEGIVAAENIAG 331 (461)
T ss_pred CCCEEEeeecCCC--c---ccHHHHHHHHHHHHHHHcC
Confidence 4789999999853 1 2356788888888888864
No 214
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=92.68 E-value=0.23 Score=54.53 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=27.5
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+.+||++.. | ..+-.|+.+|..+|..|.....
T Consensus 807 ~pgVFAaGD~a~G--p---~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 807 LTNVYMIGDVQRG--P---STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CCCEEEEeccccC--c---hHHHHHHHHHHHHHHHHhhhcC
Confidence 4689999999842 2 2456899999999999876543
No 215
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.63 E-value=0.27 Score=49.98 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=22.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||+++|+.+++ +|.+|+|||++..+
T Consensus 13 paG~~AA~~aa~----~G~~V~liE~~~~~ 38 (466)
T PRK06115 13 PGGYNAAIRAGQ----LGLKVACVEGRSTL 38 (466)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCCce
Confidence 799999999999 49999999985433
No 216
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=92.61 E-value=0.51 Score=50.07 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++|+.++.++++.. +++..+.+.. .+|+ .+.|+-||-|.|
T Consensus 158 ~~l~~~L~~~~~~~g-v~i~~~~~~~~Li~-------------------~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG 217 (657)
T PRK08626 158 HTMLYAVDNEAIKLG-VPVHDRKEAIALIH-------------------DGKRCYGAVVRCLITGELRAYVAKATLIATG 217 (657)
T ss_pred HHHHHHHHHHHHhCC-CEEEeeEEEEEEEE-------------------ECCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence 346667888887776 99999999999976 1223333333 4665 578999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 218 G~g~~ 222 (657)
T PRK08626 218 GYGRI 222 (657)
T ss_pred cccCC
Confidence 87764
No 217
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=92.26 E-value=0.15 Score=51.74 Aligned_cols=62 Identities=16% Similarity=0.159 Sum_probs=40.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCC--CCCCCCce----eeecHHHHHHHHHCCCchhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK--EDPPDPRV----STVTPATISFFKEIGAWQYV 66 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~--~~~~~~~g----~~l~~~~~~~L~~lgl~~~~ 66 (451)
++||++|+.|++ +|++|+|+|+++.+....+-.. +...-..| ....++.+++|+++|+.+.+
T Consensus 9 ~aGl~aA~~L~~----~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 9 LAGLSCAKYLAD----AGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRL 76 (453)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccce
Confidence 589999999999 4999999999987643221000 00000112 22357889999999986543
No 218
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.19 Score=50.21 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=41.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCC--CCCCCCCCceeee----cHHHHHHHHHCCCchhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI--KKEDPPDPRVSTV----TPATISFFKEIGAWQYV 66 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~--~~~~~~~~~g~~l----~~~~~~~L~~lgl~~~~ 66 (451)
+|||++|+.|+. +|++|+|+|+++.+..+... ..+....-.|+.+ -++.+.+|++++..+.+
T Consensus 10 ~AgL~~a~~La~----~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~ 77 (485)
T COG3349 10 LAGLAAAYELAD----AGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRL 77 (485)
T ss_pred HHHHHHHHHHHh----CCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchhee
Confidence 589999999999 59999999999998665431 1111222224433 35677788888755443
No 219
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.06 E-value=0.77 Score=45.55 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=63.6
Q ss_pred eeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC---C--cEEEeeE
Q 013000 101 GCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKL 175 (451)
Q Consensus 101 ~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g--~~~~adl 175 (451)
|..++-..|-+.|.+.+.+.++++++++++|+++++ ..++.+.|...| | .++.|++
T Consensus 175 GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r-------------------~~dg~W~v~~~~~~~~~~~~v~a~F 235 (488)
T PF06039_consen 175 GTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKR-------------------NGDGRWEVKVKDLKTGEKREVRAKF 235 (488)
T ss_pred CccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEE-------------------CCCCCEEEEEEecCCCCeEEEECCE
Confidence 345788999999999999986799999999999987 245667777643 3 3799999
Q ss_pred EEeecCCCCh-hhhhhCCC----CCCCcccCeEEEE
Q 013000 176 VVGADGGKSR-VRELAGFK----TTGWSYSQNAIIC 206 (451)
Q Consensus 176 vVgADG~~S~-vR~~l~~~----~~~~~~~~~~~~~ 206 (451)
|+..-|.+|. +-++.|++ ....+....+++|
T Consensus 236 VfvGAGG~aL~LLqksgi~e~~gyggfPVsG~fl~~ 271 (488)
T PF06039_consen 236 VFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQFLRC 271 (488)
T ss_pred EEECCchHhHHHHHHcCChhhcccCCCcccceEEec
Confidence 9888888887 55666653 2333444444444
No 220
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=92.02 E-value=0.68 Score=46.67 Aligned_cols=55 Identities=7% Similarity=0.157 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++.+.+.+.+++.| ++++++++|++++. . .|.+.+|+.+.+|.||-|-|.+...
T Consensus 189 ~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~----------------------~--~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 189 ADMNQPILDELDKRE-IPYRLNEEIDAING----------------------N--EVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred HHHHHHHHHHHHhcC-CEEEECCeEEEEeC----------------------C--EEEECCCCEEEeCEEEECcCCCcCh
Confidence 456667777777776 99999999999843 2 4666788889999999999986543
No 221
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.90 E-value=0.63 Score=46.13 Aligned_cols=58 Identities=17% Similarity=0.147 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeE-EEeCCC--cEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK-LDLSDG--TSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~dg--~~~~adlvVgADG~~ 183 (451)
..|.+.|.+.+++.| ++++.+++|+++.. .++.+. |...++ ..+.||-||-|.|.+
T Consensus 263 ~RL~~aL~~~~~~~G-g~il~g~~V~~i~~--------------------~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLG-GVMLPGDRVLRAEF--------------------EGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCC-CEEEECcEEEEEEe--------------------eCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 788888999999997 79999999999875 334444 444565 379999999999999
Q ss_pred -Ch
Q 013000 184 -SR 185 (451)
Q Consensus 184 -S~ 185 (451)
|.
T Consensus 322 ~S~ 324 (419)
T TIGR03378 322 FSN 324 (419)
T ss_pred cCH
Confidence 87
No 222
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.85 E-value=0.97 Score=45.91 Aligned_cols=59 Identities=7% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--C-CcEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--D-GTSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--d-g~~~~adlvVgADG~~ 183 (451)
..+...+.+.+.+.+ ++++++++|+.++. +++.+.+.+. + +.++.+|.||-|-|..
T Consensus 207 ~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 207 PEISAAVEEALAEEG-IEVVTSAQVKAVSV--------------------RGGGKIITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCcEEEEEEE--------------------cCCEEEEEEEeCCCceEEEeCEEEEeECCC
Confidence 345566666676665 99999999999865 2234445443 2 3579999999999986
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
...
T Consensus 266 p~~ 268 (463)
T TIGR02053 266 PNT 268 (463)
T ss_pred cCC
Confidence 654
No 223
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.64 E-value=1.2 Score=44.77 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+...+.+.+++.+ ++++.+++|++++. ++..+.+.. +|+++.+|.||-|-|.....
T Consensus 198 ~~~~~~~~~~l~~~G-I~i~~~~~V~~i~~--------------------~~~~v~v~~-~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 198 PSVAALAKQYMEEDG-ITFLLNAHTTEVKN--------------------DGDQVLVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCCEEEEEEe--------------------cCCEEEEEE-CCeEEEcCEEEEeeCCCCCc
Confidence 455666777777776 99999999999964 234455543 57789999999999987663
No 224
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.56 E-value=0.43 Score=51.89 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=34.4
Q ss_pred CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 122 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 122 ~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+++++.+++|+.+.. ..-.|.+.+|.++.+|.||-|.|....
T Consensus 68 gv~~~~g~~V~~Id~----------------------~~k~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 68 GITLYTGETVIQIDT----------------------DQKQVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCEEEcCCeEEEEEC----------------------CCCEEEECCCcEeeCCEEEECCCCCcC
Confidence 399999999999965 234566788989999999999998643
No 225
>PLN02546 glutathione reductase
Probab=91.45 E-value=0.34 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=20.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDS 26 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr 26 (451)
|+|..+|+.+++. |.+|+|+|+
T Consensus 89 paG~~aA~~aa~~----G~~V~liE~ 110 (558)
T PLN02546 89 SGGVRASRFASNF----GASAAVCEL 110 (558)
T ss_pred HHHHHHHHHHHHC----CCeEEEEec
Confidence 6899999999994 999999996
No 226
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.40 E-value=1.3 Score=45.09 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=25.2
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
..+|..+||++.. | .-+..|..++..+|..|..
T Consensus 314 ~~~VyA~GD~~~~--~---~~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 314 VPNVYAIGDVVRG--P---MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCEEEEEeccCC--c---chHHHHHHHHHHHHHHHcC
Confidence 4689999999863 2 2467788888888888853
No 227
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.36 E-value=0.58 Score=47.14 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=22.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
|||+++|+.|++ .|.+|+||||.+.
T Consensus 13 paG~~aA~~l~~----~g~~V~liE~~~~ 37 (438)
T PRK07251 13 KAGKTLAAKLAS----AGKKVALVEESKA 37 (438)
T ss_pred HHHHHHHHHHHh----CCCEEEEEecCCc
Confidence 699999999999 4999999999864
No 228
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.35 E-value=0.72 Score=46.51 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
+||+.+|..|++.. .+.+|+|||+.+..
T Consensus 11 ~aG~~aA~~l~~~~--~~~~I~li~~~~~~ 38 (438)
T PRK13512 11 AGGATCASQIRRLD--KESDIIIFEKDRDM 38 (438)
T ss_pred HHHHHHHHHHHhhC--CCCCEEEEECCCCc
Confidence 58999999998742 47899999999865
No 229
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.35 E-value=0.74 Score=45.69 Aligned_cols=42 Identities=17% Similarity=0.123 Sum_probs=34.5
Q ss_pred CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 122 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 122 ~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+++++.++.|+.+.. ..-.|.+.||.++.+|.||-|.|.+..
T Consensus 72 ~i~~~~g~~V~~id~----------------------~~~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGR----------------------DTRELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEEC----------------------CCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 499999999999854 234566678999999999999999864
No 230
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=91.31 E-value=0.42 Score=41.96 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=25.4
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPALGKSNF 35 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~ 35 (451)
+||++|+..++.. ..++|.|||..-.|....|
T Consensus 87 aGLsAAY~I~~~r--PdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 87 AGLSAAYVIAKNR--PDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred cccceeeeeeccC--CCceEEEEEeeecCCCccc
Confidence 7999999999642 5899999999998844333
No 231
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=91.13 E-value=0.45 Score=46.17 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=44.6
Q ss_pred eechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--CC--cEEEeeEEEe
Q 013000 103 VVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DG--TSLYAKLVVG 178 (451)
Q Consensus 103 ~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg--~~~~adlvVg 178 (451)
...|..+.+.|.-.+.+.+ ..++++++|++|+.. .+. .....+|... +| .++.|+-||-
T Consensus 91 ~p~R~ef~dYl~Wva~~~~-~~v~~~~~V~~I~~~---------~~~-------~~~~~~V~~~~~~g~~~~~~ar~vVl 153 (341)
T PF13434_consen 91 FPSRREFNDYLRWVAEQLD-NQVRYGSEVTSIEPD---------DDG-------DEDLFRVTTRDSDGDGETYRARNVVL 153 (341)
T ss_dssp S-BHHHHHHHHHHHHCCGT-TTEEESEEEEEEEEE---------EET-------TEEEEEEEEEETTS-EEEEEESEEEE
T ss_pred CCCHHHHHHHHHHHHHhCC-CceEECCEEEEEEEe---------cCC-------CccEEEEEEeecCCCeeEEEeCeEEE
Confidence 4679999999988888886 469999999999761 000 0134677763 34 5899999999
Q ss_pred ecCCCChhhhhh
Q 013000 179 ADGGKSRVRELA 190 (451)
Q Consensus 179 ADG~~S~vR~~l 190 (451)
|-|..-.+-..+
T Consensus 154 a~G~~P~iP~~~ 165 (341)
T PF13434_consen 154 ATGGQPRIPEWF 165 (341)
T ss_dssp ----EE---GGG
T ss_pred CcCCCCCCCcch
Confidence 999543344433
No 232
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=90.97 E-value=0.5 Score=34.88 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG 168 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg 168 (451)
..+...+.+.+++.+ +++++++++++++. ++.+++|+++||
T Consensus 40 ~~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------------~~~~~~V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRG-VEVHTNTKVKEIEK--------------------DGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTT-EEEEESEEEEEEEE--------------------ETTSEEEEEETS
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEecC
Confidence 466677777777776 99999999999976 333377888887
No 233
>PRK07233 hypothetical protein; Provisional
Probab=90.76 E-value=0.24 Score=49.73 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=39.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCC--CCCCCCCCCce---eeecHHHHHHHHHCCCchhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNF--IKKEDPPDPRV---STVTPATISFFKEIGAWQYV 66 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~--~~~~~~~~~~g---~~l~~~~~~~L~~lgl~~~~ 66 (451)
++||++|..|++ +|++|+|+|+++.+..... ..++......+ ..-.++..++++++|+.+++
T Consensus 9 iaGL~aA~~L~~----~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 9 IAGLAAAYRLAK----RGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKL 75 (434)
T ss_pred HHHHHHHHHHHH----CCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCce
Confidence 589999999999 5999999999998743211 00000000001 11246678899999986554
No 234
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=90.61 E-value=21 Score=36.08 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC-eeEEEeCCCc-----EEEeeEEEeec
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH-LAKLDLSDGT-----SLYAKLVVGAD 180 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~~~dg~-----~~~adlvVgAD 180 (451)
..|.+.|.+.+.+.| ++|+.++.|++|+. ++++ .+.|.+.+|+ ++.+|.||-|-
T Consensus 213 ~~l~~~l~~~l~~~g-~~i~l~~~V~~I~~-------------------~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~ 272 (453)
T TIGR02731 213 ERLCQPIVDYITSRG-GEVRLNSRLKEIVL-------------------NEDGSVKHFVLADGEGQRRFEVTADAYVSAM 272 (453)
T ss_pred HHHHHHHHHHHHhcC-CEEeCCCeeEEEEE-------------------CCCCCEEEEEEecCCCCceeEEECCEEEEcC
Confidence 456788888887776 79999999999975 1223 3456666665 78999999988
Q ss_pred CCCChhhhhh
Q 013000 181 GGKSRVRELA 190 (451)
Q Consensus 181 G~~S~vR~~l 190 (451)
..+. +++.+
T Consensus 273 p~~~-~~~lL 281 (453)
T TIGR02731 273 PVDI-FKLLL 281 (453)
T ss_pred CHHH-HHhhC
Confidence 7754 55555
No 235
>PTZ00058 glutathione reductase; Provisional
Probab=90.37 E-value=0.48 Score=49.20 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||.++|..++++ |.+|+||||..
T Consensus 58 ~aG~~aA~~aa~~----G~~ValIEk~~ 81 (561)
T PTZ00058 58 SGGMAAARRAARN----KAKVALVEKDY 81 (561)
T ss_pred HHHHHHHHHHHHc----CCeEEEEeccc
Confidence 6899999999995 99999999874
No 236
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.35 E-value=0.2 Score=51.22 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
..|-+.|.+.+++.| ++|+++++|+.|.. +++..+++...+|+.+.+|.||.+-..
T Consensus 224 ~al~~aL~~~~~~~G-g~I~~~~~V~~I~v-------------------~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHG-GEIRTGAEVSQILV-------------------EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcC-CEEECCCceEEEEE-------------------eCCcceEEeccccceeccceeEecCch
Confidence 678889999999997 89999999999976 233468888888878899999876655
No 237
>PLN02487 zeta-carotene desaturase
Probab=90.23 E-value=0.29 Score=50.76 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=41.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCC--CCCCCCCCCCcee----eecHHHHHHHHHCCCchhhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSN--FIKKEDPPDPRVS----TVTPATISFFKEIGAWQYVQ 67 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~--~~~~~~~~~~~g~----~l~~~~~~~L~~lgl~~~~~ 67 (451)
++||++|+.|++ +|++|+|+|+.+.++... +...+...--.|. +..++..++|+++|+.+++.
T Consensus 85 ~~Gl~~a~~L~~----~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~ 153 (569)
T PLN02487 85 LAGMSTAVELLD----QGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 153 (569)
T ss_pred HHHHHHHHHHHh----CCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCccccc
Confidence 589999999999 599999999998874211 0000000001122 23477899999999987754
No 238
>PLN02487 zeta-carotene desaturase
Probab=90.23 E-value=26 Score=36.61 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCcEEEeeEEEeecCCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~~~~adlvVgADG~~S 184 (451)
.|..-+.+.+++.| ++|+++++|.+++. +.+.++ ......|++ .+++++.+|.||-|-+..
T Consensus 296 ~l~~pl~~~L~~~G-g~V~l~~~V~~I~~---------~~~~~g-----~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~- 359 (569)
T PLN02487 296 RLSGPIAKYITDRG-GRFHLRWGCREILY---------DKSPDG-----ETYVTGLKVSKATEKEIVKADAYVAACDVP- 359 (569)
T ss_pred HHHHHHHHHHHHcC-CEEEeCCceEEEEE---------ecCCCC-----ceeEEEEEEecCCCceEEECCEEEECCCHH-
Confidence 36677778888887 79999999999977 111100 001244555 234578899999999987
Q ss_pred hhhhhh
Q 013000 185 RVRELA 190 (451)
Q Consensus 185 ~vR~~l 190 (451)
.+.+.+
T Consensus 360 ~~~~Ll 365 (569)
T PLN02487 360 GIKRLL 365 (569)
T ss_pred HHHHhC
Confidence 444444
No 239
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.14 E-value=0.84 Score=49.90 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=33.9
Q ss_pred CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 122 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 122 ~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+++++.+++|+.+.. ..-.|...+|+++.+|.||-|.|.+..
T Consensus 73 gI~~~~g~~V~~Id~----------------------~~~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 73 GIKVLVGERAITINR----------------------QEKVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CCEEEcCCEEEEEeC----------------------CCcEEEECCCcEEECCEEEECCCCCcC
Confidence 499999999999854 234556678889999999999998654
No 240
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=90.13 E-value=1.7 Score=43.08 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeE---EEeCCCcEEEeeEEEeecCCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAK---LDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---v~~~dg~~~~adlvVgADG~~S 184 (451)
.+-..+.+.+.+.+ ++++.+.++++++. ...... +...++..+.+|+++-+-|.+-
T Consensus 179 ~~~~~~~~~l~~~g-i~~~~~~~~~~i~~--------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 179 EVAEELAELLEKYG-VELLLGTKVVGVEG--------------------KGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHHHCC-cEEEeCCceEEEEc--------------------ccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 45555666666666 99999999999975 222222 5777888999999999999866
Q ss_pred h
Q 013000 185 R 185 (451)
Q Consensus 185 ~ 185 (451)
.
T Consensus 238 ~ 238 (415)
T COG0446 238 N 238 (415)
T ss_pred c
Confidence 3
No 241
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=90.10 E-value=11 Score=40.85 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=30.9
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcC
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 371 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 371 (451)
.|||++.||+.+...|- -+.-|++++...|+.|...++..
T Consensus 643 ~GRL~FAGEaTs~~~~G---tVhGAi~SGlRAA~eIl~~~~~~ 682 (808)
T PLN02328 643 DGRVFFAGEATNKQYPA---TMHGAFLSGMREAANILRVARRR 682 (808)
T ss_pred CCCEEEEEhhHhCCCCe---EhHHHHHHHHHHHHHHHHHHhhc
Confidence 57999999998876664 44557888998888888776643
No 242
>PLN03000 amine oxidase
Probab=89.97 E-value=13 Score=40.68 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=29.5
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
.|||++.|++.+...|-+- .-|++++...|+.|...+.
T Consensus 587 ~GRIfFAGEaTs~~~~GTV---hGAieSGlRAA~eIl~~l~ 624 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATM---HGAFVTGLREAANMAQSAK 624 (881)
T ss_pred CCcEEEeehHHhCCCCeeH---HHHHHHHHHHHHHHHHHhh
Confidence 5799999999988877444 4478888888877776654
No 243
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=89.93 E-value=2.4 Score=42.94 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
+...|.+.. +.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||-|.|.....
T Consensus 212 ~~~~l~~~~-~~g-I~i~~~~~V~~i~~--------------------~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 212 ISDRFTEIA-KKK-WDIRLGRNVTAVEQ--------------------DGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HHHHHHHHH-hcC-CEEEeCCEEEEEEE--------------------cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 334444333 334 99999999999965 334577888888899999999999976543
No 244
>PRK14727 putative mercuric reductase; Provisional
Probab=89.82 E-value=1.4 Score=45.11 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||+++|..|+++ |.+|+|+|+....
T Consensus 26 ~aG~~~a~~~~~~----g~~v~~ie~~~~~ 51 (479)
T PRK14727 26 SAAFAAAIKAAEH----GARVTIIEGADVI 51 (479)
T ss_pred HHHHHHHHHHHhC----CCeEEEEEccCcc
Confidence 6899999999995 9999999997544
No 245
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=89.77 E-value=1.2 Score=44.15 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.+...+.+.+.+.+ ++++.+++|++++. +..+.+.+.||+++.+|+||.|.|.....
T Consensus 187 ~~~~~l~~~l~~~G-V~i~~~~~V~~i~~---------------------~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 187 PVQRYLLQRHQQAG-VRILLNNAIEHVVD---------------------GEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeeEEEEc---------------------CCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 44556777777776 99999999999852 24567888899999999999999986553
No 246
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=89.12 E-value=0.41 Score=48.75 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCC--eeEEEeCCC---cEEEeeEEEeecCCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGH--LAKLDLSDG---TSLYAKLVVGADGGK 183 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~dg---~~~~adlvVgADG~~ 183 (451)
+.+-|.+.+.+.| ++|+.+++|++++. ++.. ++. ...|.+.+| +++.+|.||-|-..+
T Consensus 221 l~~pl~~~L~~~G-g~i~~~~~V~~I~~---------~~~~-------~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARG-GKFHLRHKVREIKY---------EKSS-------DGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCC-CEEECCCEEEEEEE---------ecCC-------CCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 5566778888877 79999999999976 1100 011 233445544 468899999999876
Q ss_pred Chhhhhh
Q 013000 184 SRVRELA 190 (451)
Q Consensus 184 S~vR~~l 190 (451)
.+.+.+
T Consensus 284 -~~~~Ll 289 (474)
T TIGR02732 284 -GIKRLL 289 (474)
T ss_pred -HHHhhC
Confidence 334444
No 247
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=88.96 E-value=0.39 Score=48.75 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 368 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~ 368 (451)
.++.+.||.. .|-|++-+|.+|..+|+.|...+
T Consensus 428 ~~l~l~G~~~------~g~~i~~~i~sg~~~a~~~~~~~ 460 (462)
T TIGR00562 428 PGVFLTGNSF------EGVGIPDCIDQGKAAASDVLTFL 460 (462)
T ss_pred CCEEEecccc------CCCcHHHHHHHHHHHHHHHHHhh
Confidence 5899999984 46799999999999999987653
No 248
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=88.67 E-value=2.9 Score=42.35 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=25.7
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
..+|+.+||+++.. | -+..|+.+|..++..|..
T Consensus 298 ~~~IyA~GD~~~~~-~----~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 298 VPGIYAAGDVNGKP-P----LLHEAADEGRIAAENAAG 330 (460)
T ss_pred CCCEEEEEecCCCc-c----chhHHHHHHHHHHHHhcC
Confidence 47899999999642 2 357889999999888864
No 249
>PLN02507 glutathione reductase
Probab=88.60 E-value=1.7 Score=44.65 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+.+.+.+.+.+.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.|+-|-|.....
T Consensus 244 ~~~~~~l~~~l~~~G-I~i~~~~~V~~i~~--------------------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 244 DEMRAVVARNLEGRG-INLHPRTNLTQLTK--------------------TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 345566666777776 99999999999965 335577888888899999999999987665
No 250
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=88.37 E-value=3 Score=42.44 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 184 (451)
..+.+.+.+.+.+.+ ++++.+++|++++. .+ .+....+.+.+|+ ++.+|.||.|-|...
T Consensus 221 ~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~---------~~---------~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p 281 (472)
T PRK05976 221 AELSKEVARLLKKLG-VRVVTGAKVLGLTL---------KK---------DGGVLIVAEHNGEEKTLEADKVLVSVGRRP 281 (472)
T ss_pred HHHHHHHHHHHHhcC-CEEEeCcEEEEEEE---------ec---------CCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence 455666777777776 99999999999853 00 1222334455774 699999999999876
Q ss_pred hh
Q 013000 185 RV 186 (451)
Q Consensus 185 ~v 186 (451)
.+
T Consensus 282 ~~ 283 (472)
T PRK05976 282 NT 283 (472)
T ss_pred CC
Confidence 54
No 251
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=88.33 E-value=1.5 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|++. |.+|+|||+..
T Consensus 14 paG~~AA~~aa~~----G~~V~lie~~~ 37 (466)
T PRK07818 14 PGGYVAAIRAAQL----GLKTAVVEKKY 37 (466)
T ss_pred HHHHHHHHHHHhC----CCeEEEEecCC
Confidence 6899999999994 99999999863
No 252
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=88.25 E-value=0.3 Score=50.23 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=30.5
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcC
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 371 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 371 (451)
.++.|+|+.+|+ |.|+..++.+|..+|+.|....+.+
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~il~~~~~~ 495 (502)
T TIGR02734 459 DNLYLVGAGTHP-----GAGVPGVLGSAKATAKLMLGDLAPG 495 (502)
T ss_pred CCEEEeCCCCCC-----CCCHHHHHHHHHHHHHHHHhhccCC
Confidence 589999999753 7899999999999999997765443
No 253
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=88.16 E-value=2.2 Score=44.89 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+.++|...+.+.+ ++++.++.++++..+ .+. ++..+.|.. .+|+ .+.|+.||-|.|
T Consensus 126 ~~~~r~l~~~l~~~~-~~i~~~~~v~~Ll~d---------~~~-------~GrV~Gv~~~~~~~g~~~~i~AkaVVLATG 188 (614)
T TIGR02061 126 ESYKPIVAEAAKNAL-GDIFERIFIVKLLLD---------KNT-------PNRIAGAVGFNVRANEVHVFKAKTVIVAAG 188 (614)
T ss_pred hhHHHHHHHHHHhCC-CeEEcccEEEEEEec---------CCC-------CCeEEEEEEEEeCCCcEEEEECCEEEECCC
Confidence 355556666666554 799999999998750 000 023334433 4565 688999999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
..+.
T Consensus 189 G~~~ 192 (614)
T TIGR02061 189 GAVN 192 (614)
T ss_pred cccc
Confidence 9874
No 254
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.70 E-value=1.3 Score=45.27 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=24.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++||++|+.|+|+ |++|+|+||+..+.
T Consensus 13 ~~GL~aAa~LA~~----G~~V~VlE~~~~~G 39 (487)
T COG1233 13 LNGLAAAALLARA----GLKVTVLEKNDRVG 39 (487)
T ss_pred hhHHHHHHHHHhC----CCEEEEEEecCCCC
Confidence 4799999999994 99999999998774
No 255
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=87.59 E-value=2.1 Score=43.28 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++...+.+.+.+.+ ++++.+++|++++. .++.+.+.+.+|+++.+|.||-|-|.....
T Consensus 207 ~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 207 DDMRALLARNMEGRG-IRIHPQTSLTSITK--------------------TDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCEEEEEEE--------------------cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 345566777777776 99999999999965 234567777888899999999999986553
No 256
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=87.26 E-value=0.61 Score=48.63 Aligned_cols=63 Identities=21% Similarity=0.249 Sum_probs=47.8
Q ss_pred HHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC--CChhhh
Q 013000 111 SSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KSRVRE 188 (451)
Q Consensus 111 ~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~--~S~vR~ 188 (451)
.+|.+.+.+.| ++++.++..+.+.. .+....+.|+||+.+.||+||-|+|+ +.-+.+
T Consensus 191 ~lL~~~le~~G-i~~~l~~~t~ei~g--------------------~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~ 249 (793)
T COG1251 191 RLLRRKLEDLG-IKVLLEKNTEEIVG--------------------EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAK 249 (793)
T ss_pred HHHHHHHHhhc-ceeecccchhhhhc--------------------CcceeeEeecCCCcccceeEEEecccccccHhHH
Confidence 34555566666 99999988888754 45668899999999999999999998 444556
Q ss_pred hhCCCC
Q 013000 189 LAGFKT 194 (451)
Q Consensus 189 ~l~~~~ 194 (451)
..|+..
T Consensus 250 ~aGlav 255 (793)
T COG1251 250 EAGLAV 255 (793)
T ss_pred hcCcCc
Confidence 556554
No 257
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=87.21 E-value=13 Score=37.55 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=26.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
+|+|++|..|-|.+-.+|-+|+|+|+.+.+.
T Consensus 12 iAsLAAAvfLIrDa~~pg~nIhIlE~~~~~G 42 (500)
T PF06100_consen 12 IASLAAAVFLIRDAKMPGENIHILEELDVPG 42 (500)
T ss_pred HHHHHhhhhhhccCCCCccceEEEeCCCCCC
Confidence 5899999999887656788999999998763
No 258
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=86.59 E-value=27 Score=32.77 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=38.4
Q ss_pred eeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 102 CVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 102 ~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
|..+=..+...|.+++.+.| +++.. .+|.+++. + . .-.+|+||-|.|
T Consensus 146 ~~sE~~~ylpyl~k~l~e~G-vef~~-r~v~~l~E--------------------------~--~---~~~~DVivNCtG 192 (342)
T KOG3923|consen 146 YLSEGPKYLPYLKKRLTENG-VEFVQ-RRVESLEE--------------------------V--A---RPEYDVIVNCTG 192 (342)
T ss_pred eeccchhhhHHHHHHHHhcC-cEEEE-eeeccHHH--------------------------h--c---cCCCcEEEECCc
Confidence 45667889999999999997 66653 47777743 0 0 146899999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
..|.
T Consensus 193 L~a~ 196 (342)
T KOG3923|consen 193 LGAG 196 (342)
T ss_pred cccc
Confidence 9886
No 259
>PLN02568 polyamine oxidase
Probab=86.57 E-value=2.1 Score=44.30 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
..|.+.|.+.+. ...|+++++|+.|+. .++.+.|++.||+++.||.||.+=-.
T Consensus 242 ~~Li~~La~~L~---~~~I~ln~~V~~I~~--------------------~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLP---PGTIQLGRKVTRIEW--------------------QDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCC---CCEEEeCCeEEEEEE--------------------eCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 347777777764 247999999999987 45679999999999999999987553
No 260
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=86.26 E-value=1 Score=43.79 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC--CC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG--KS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~--~S 184 (451)
..|-++-.+.+++.| |+|+.++.|.++.. ....+.+.+.||.++..|+||.|-|- ||
T Consensus 393 eyls~wt~ekir~~G-V~V~pna~v~sv~~--------------------~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGG-VDVRPNAKVESVRK--------------------CCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHHHHHHHHHhcC-ceeccchhhhhhhh--------------------hccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 567777777777765 99999999999865 34668899999999999999999997 67
Q ss_pred hhhhhhCC
Q 013000 185 RVRELAGF 192 (451)
Q Consensus 185 ~vR~~l~~ 192 (451)
-+...-|+
T Consensus 452 ela~~sgL 459 (659)
T KOG1346|consen 452 ELAEASGL 459 (659)
T ss_pred hhcccccc
Confidence 66655443
No 261
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=85.99 E-value=2.4 Score=46.22 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+.+.+.+.+.+.| |+++.+++++++.. .+....|.+.||+++.+|+||-|-|.+..
T Consensus 184 ~~~~l~~~l~~~G-V~v~~~~~v~~i~~--------------------~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 184 AGRLLQRELEQKG-LTFLLEKDTVEIVG--------------------ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHcC-CEEEeCCceEEEEc--------------------CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3455666777776 99999999999854 23456688899999999999999998644
No 262
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=85.87 E-value=0.47 Score=48.59 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
.++.|+|+.+|+ |.|+..++.+|..+|+.|.+
T Consensus 459 ~gLyl~G~~~~p-----G~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 459 KGLWLCGDSIHP-----GEGTAGVSYSALMVVRQILA 490 (492)
T ss_pred CCeEEecCccCC-----CCcHHHHHHHHHHHHHHHhh
Confidence 589999999864 78999999999999998864
No 263
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=85.72 E-value=5.4 Score=40.01 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.2
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||++..-.+-...-+..|+..|..+|+.|...+..
T Consensus 308 ~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g 349 (424)
T PTZ00318 308 IPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKG 349 (424)
T ss_pred CCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 468999999998533212223456889999999999887754
No 264
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=85.53 E-value=0.71 Score=46.87 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=27.5
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG 367 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~ 367 (451)
+++.+.||. +.|.|++-||.+|..+|+.|...
T Consensus 429 ~~l~~aG~~------~~g~~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 429 PNIYLAGAS------YYGVGIGACIGNGKNTANEIIAT 460 (463)
T ss_pred CCeEEeccc------cccccHHHHHHHHHHHHHHHHHH
Confidence 789999999 35668999999999999988764
No 265
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=85.47 E-value=2.8 Score=42.18 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
..|-+.|.+.+...| .+++.++.|++++. ++ ++..+.|++.+|+++.|+.||......
T Consensus 232 g~L~qal~r~~a~~G-g~~~L~~~V~~I~~-----------~~-------~g~~~~V~~~~Ge~i~a~~VV~~~s~~ 289 (443)
T PTZ00363 232 GGLPQAFSRLCAIYG-GTYMLNTPVDEVVF-----------DE-------NGKVCGVKSEGGEVAKCKLVICDPSYF 289 (443)
T ss_pred HHHHHHHHHHHHHcC-cEEEcCCeEEEEEE-----------cC-------CCeEEEEEECCCcEEECCEEEECcccc
Confidence 467777888777777 69999999999976 10 124477899999999999999865554
No 266
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=85.46 E-value=3.3 Score=42.32 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++.+.+.+.+++.| ++++.+++|++++. +.++...|.+.+|+++.+|.||-|-|.....
T Consensus 231 ~~~~~~l~~~L~~~G-I~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 231 STLRKELTKQLRANG-INIMTNENPAKVTL-------------------NADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCCEEEEEEE-------------------cCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 456677777887776 99999999999965 1223366777788899999999999987665
Q ss_pred h
Q 013000 187 R 187 (451)
Q Consensus 187 R 187 (451)
.
T Consensus 291 ~ 291 (486)
T TIGR01423 291 Q 291 (486)
T ss_pred c
Confidence 4
No 267
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.14 E-value=1.7 Score=42.34 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=80.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHH--HHHHHCCCchhhhhhhcccccEEE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI--SFFKEIGAWQYVQQHRHAYFDKMQ 78 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~--~~L~~lgl~~~~~~~~~~~~~~~~ 78 (451)
|+-|++|++|..+ .+.+++.+||.+..+ +++ |..|...++ ..|+.| .... .+....+
T Consensus 15 PfNL~LA~ll~e~---~~~~~lFLerkp~F~----------WHp-GmllegstlQv~FlkDL------VTl~-~PTs~yS 73 (436)
T COG3486 15 PFNLSLAALLEEH---SGLKSLFLERKPDFS----------WHP-GMLLEGSTLQVPFLKDL------VTLV-DPTSPYS 73 (436)
T ss_pred chHHHHHHHhccc---cCcceEEEecCCCCC----------cCC-CcccCCccccccchhhh------cccc-CCCCchH
Confidence 5678999999997 468899999999873 222 222222221 223322 1111 1222222
Q ss_pred EEe---CCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccc
Q 013000 79 VWD---YTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLF 155 (451)
Q Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (451)
+.+ ..+ ....|- +. .-..+.|.+..+.+.=.+...+ .+++|.+|++|.. .+
T Consensus 74 FLNYL~~h~-RLy~Fl----~~--e~f~i~R~Ey~dY~~Waa~~l~--~~rfg~~V~~i~~----------~~------- 127 (436)
T COG3486 74 FLNYLHEHG-RLYEFL----NY--ETFHIPRREYNDYCQWAASQLP--SLRFGEEVTDISS----------LD------- 127 (436)
T ss_pred HHHHHHHcc-hHhhhh----hh--hcccccHHHHHHHHHHHHhhCC--ccccCCeeccccc----------cC-------
Confidence 211 011 111111 01 1145888888888877777775 6889999997732 12
Q ss_pred cCCCeeE--EEeCCCcEEEeeEEEeecCCCChhh
Q 013000 156 TKGHLAK--LDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 156 ~~~~~v~--v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.+..+. +...++..+.|+=||-.-|..-.+-
T Consensus 128 -~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 128 -GDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred -CcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 233344 6666778999988888888655443
No 268
>PLN02612 phytoene desaturase
Probab=84.99 E-value=1.1 Score=46.78 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=40.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCC-C-CCCCCCCce----eeecHHHHHHHHHCCCchhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFI-K-KEDPPDPRV----STVTPATISFFKEIGAWQYV 66 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~-~-~~~~~~~~g----~~l~~~~~~~L~~lgl~~~~ 66 (451)
++||++|+.|+++ |++|+|+|++..+...... . .+...--.| ....++..++|+++|+.+.+
T Consensus 103 ~~Gl~~a~~l~~~----g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~ 170 (567)
T PLN02612 103 LAGLSTAKYLADA----GHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRL 170 (567)
T ss_pred HHHHHHHHHHHhc----CCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccc
Confidence 4799999999994 9999999998776332210 0 000001112 22357788999999986654
No 269
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=84.89 E-value=0.55 Score=48.16 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=27.5
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
.++.|+|+.+| .|.|+..++.+|..+|+.|..
T Consensus 459 ~gLyl~G~~~~-----pG~Gv~g~~~sG~~~a~~i~~ 490 (493)
T TIGR02730 459 PGLYCVGDSCF-----PGQGLNAVAFSGFACAHRVAA 490 (493)
T ss_pred CCeEEecCcCC-----CCCCHHHHHHHHHHHHHHHHh
Confidence 58999999986 378999999999999998865
No 270
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=84.15 E-value=7.7 Score=39.67 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.0
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAE 366 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~ 366 (451)
..+|..+||+++..+++ ...|+.+|..+++.|..
T Consensus 310 ~p~IyA~GDv~~~~~~l----~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 310 VPYIYAVGDILEDKQEL----TPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CCCEEEEEEecCCCccc----hHHHHHHHHHHHHHHhc
Confidence 46899999998643332 45688888888888753
No 271
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.11 E-value=3.3 Score=42.06 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--CCc--EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DGT--SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~--~~~adlvVgADG~ 182 (451)
.++...+.+.+.+.+ ++++.+++|++++. .+..+.+.+. ||+ ++.+|.||-|-|.
T Consensus 213 ~~~~~~l~~~l~~~g-V~i~~~~~v~~i~~--------------------~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 213 AEVSKEIAKQYKKLG-VKILTGTKVESIDD--------------------NGSKVTVTVSKKDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------------eCCeEEEEEEecCCCeEEEEeCEEEECcCc
Confidence 456777888888876 99999999999964 2344555554 674 7999999999998
Q ss_pred CChh
Q 013000 183 KSRV 186 (451)
Q Consensus 183 ~S~v 186 (451)
...+
T Consensus 272 ~pn~ 275 (466)
T PRK07818 272 APRV 275 (466)
T ss_pred ccCC
Confidence 7665
No 272
>PTZ00052 thioredoxin reductase; Provisional
Probab=83.80 E-value=4.3 Score=41.71 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.+.+.+.+.+++.| ++++.++++..++. .++.+.+.+.+|+++.+|.||-|-|....+.
T Consensus 223 ~~~~~l~~~l~~~G-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 281 (499)
T PTZ00052 223 QCSEKVVEYMKEQG-TLFLEGVVPINIEK--------------------MDDKIKVLFSDGTTELFDTVLYATGRKPDIK 281 (499)
T ss_pred HHHHHHHHHHHHcC-CEEEcCCeEEEEEE--------------------cCCeEEEEECCCCEEEcCEEEEeeCCCCCcc
Confidence 34566777777776 99999999998865 2244667788898899999999999877654
No 273
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=83.76 E-value=3 Score=41.08 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=31.1
Q ss_pred CceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 122 FQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 122 ~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
+++++.+++|+++.. ... .|.. +|.++.+|.||-|.|....
T Consensus 72 gv~~~~~~~V~~id~--------------------~~~--~v~~-~~~~~~yd~LVlATG~~~~ 112 (377)
T PRK04965 72 NLRLFPHTWVTDIDA--------------------EAQ--VVKS-QGNQWQYDKLVLATGASAF 112 (377)
T ss_pred CCEEECCCEEEEEEC--------------------CCC--EEEE-CCeEEeCCEEEECCCCCCC
Confidence 389999999999864 222 3333 6778999999999998653
No 274
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.40 E-value=2.7 Score=46.55 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
.|||++|+.+++ +|.+|+|+||.+.
T Consensus 23 ~AGl~AAl~Aa~----~G~~V~lleK~~~ 47 (897)
T PRK13800 23 TAGTMAALTAAE----HGANVLLLEKAHV 47 (897)
T ss_pred HHHHHHHHHHHH----CCCeEEEEecccc
Confidence 389999999998 4999999999985
No 275
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=83.36 E-value=8 Score=39.19 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC--cEEEeeEEEeecCCCCh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKSR 185 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~~~~adlvVgADG~~S~ 185 (451)
.+.+.+.+.+.+. ++++++++|++++. +.+..+.+.+.+| .++.+|.||.|.|....
T Consensus 211 ~~~~~~~~~l~~~--I~i~~~~~v~~i~~-------------------~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 211 EVSKQAQKILSKE--FKIKLGAKVTSVEK-------------------SGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred HHHHHHHHHHhhc--cEEEcCCEEEEEEE-------------------cCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 4556666666654 89999999999965 0112455544444 47999999999998655
Q ss_pred hh
Q 013000 186 VR 187 (451)
Q Consensus 186 vR 187 (451)
+.
T Consensus 270 ~~ 271 (460)
T PRK06292 270 TD 271 (460)
T ss_pred CC
Confidence 43
No 276
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=83.04 E-value=3.6 Score=41.26 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
.+.+.+.+.+.+.+ |+++.+++|+++.. + .|.++||+++.+|+||-|-|...
T Consensus 229 ~~~~~~~~~L~~~g-V~v~~~~~v~~v~~----------------------~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 229 ALRKYGQRRLRRLG-VDIRTKTAVKEVLD----------------------K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeEEEEeC----------------------C--EEEECCCCEEEccEEEEccCCCC
Confidence 46777777788876 99999999998843 3 35678999999999999999744
No 277
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=82.96 E-value=3.8 Score=41.78 Aligned_cols=59 Identities=8% Similarity=0.111 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC--C--cEEEeeEEEeecCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD--G--TSLYAKLVVGADGGK 183 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d--g--~~~~adlvVgADG~~ 183 (451)
++...+.+.+.+.+ ++++.+++|++++. .+..+.+.+.+ | +++.+|.||-|-|..
T Consensus 225 ~~~~~~~~~l~~~g-i~i~~~~~v~~i~~--------------------~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~ 283 (475)
T PRK06327 225 QVAKEAAKAFTKQG-LDIHLGVKIGEIKT--------------------GGKGVSVAYTDADGEAQTLEVDKLIVSIGRV 283 (475)
T ss_pred HHHHHHHHHHHHcC-cEEEeCcEEEEEEE--------------------cCCEEEEEEEeCCCceeEEEcCEEEEccCCc
Confidence 45667777777776 99999999999975 33456666655 3 469999999999987
Q ss_pred Chhh
Q 013000 184 SRVR 187 (451)
Q Consensus 184 S~vR 187 (451)
..+.
T Consensus 284 p~~~ 287 (475)
T PRK06327 284 PNTD 287 (475)
T ss_pred cCCC
Confidence 7643
No 278
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=82.95 E-value=3.2 Score=39.27 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=61.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHH---HHHHHCCCch-hhhhhhcccccE
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATI---SFFKEIGAWQ-YVQQHRHAYFDK 76 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~L~~lgl~~-~~~~~~~~~~~~ 76 (451)
.||.-+|..+++ +|+.|.++|=++...+... ....-+..+-.+++ ..-...|+++ ++...+.
T Consensus 13 LAGSEAAwqiA~----~Gv~V~L~EMRp~k~TpaH-----~td~fAELVCSNSlr~~~~~navGlLk~EMR~lgS----- 78 (439)
T COG1206 13 LAGSEAAWQIAK----RGVPVILYEMRPVKGTPAH-----KTDNFAELVCSNSLRSDALTNAVGLLKAEMRLLGS----- 78 (439)
T ss_pred ccccHHHHHHHH----cCCcEEEEEcccccCCCcc-----cccchhhheeccccccchhhhhhHHHHHHHHHhhh-----
Confidence 378889999999 5999999998876432211 00011111111111 2223334433 2322221
Q ss_pred EEEEeCCCcceeEeecCCCCCccceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEE
Q 013000 77 MQVWDYTGLGYTKYNARDVNKEILGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSM 134 (451)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~ 134 (451)
+.+...+.. . -+....+.++|..|-+.+.+.+.+++.|+|+.+ +|+.+
T Consensus 79 lii~~Ad~~--------~-VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~i 126 (439)
T COG1206 79 LIIEAADKH--------R-VPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEI 126 (439)
T ss_pred HHhhhhhhc--------c-CCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccC
Confidence 101111100 0 012234789999999999999999998888876 66665
No 279
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=82.94 E-value=7.2 Score=36.89 Aligned_cols=60 Identities=18% Similarity=0.323 Sum_probs=38.5
Q ss_pred HHHHHHHHHh----hcC-CCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe--CCCc--EEEeeEEEe
Q 013000 108 VLHSSLLSCM----QNT-EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SDGT--SLYAKLVVG 178 (451)
Q Consensus 108 ~L~~~L~~~~----~~~-g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~dg~--~~~adlvVg 178 (451)
.+...|.+++ .+. .-++|..+++|+++.. +++....|.+ .+|+ .+.++-||-
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-------------------n~gkVsgVeymd~sgek~~~~~~~VVl 200 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILR-------------------NNGKVSGVEYMDASGEKSKIIGDAVVL 200 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-------------------CCCeEEEEEEEcCCCCccceecCceEE
Confidence 4444444444 333 2378999999999975 1223333444 3454 688999999
Q ss_pred ecCCCChh
Q 013000 179 ADGGKSRV 186 (451)
Q Consensus 179 ADG~~S~v 186 (451)
|.|..+--
T Consensus 201 atGGf~ys 208 (477)
T KOG2404|consen 201 ATGGFGYS 208 (477)
T ss_pred ecCCcCcC
Confidence 99998754
No 280
>PLN02529 lysine-specific histone demethylase 1
Probab=82.85 E-value=75 Score=34.37 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=29.8
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
.||+++.||+.+...|-+-+| |++++...|+.|...+.
T Consensus 562 ~grL~FAGEaTs~~~pgtVeG---Ai~SG~RAA~eIl~~l~ 599 (738)
T PLN02529 562 SGRLFFAGEATTRQYPATMHG---AFLSGLREASRILHVAR 599 (738)
T ss_pred CCCEEEEEHHHhCCCCeEeHH---HHHHHHHHHHHHHHHHh
Confidence 489999999998887755555 68888888877777654
No 281
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=82.46 E-value=4.2 Score=40.77 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.+...+.+.+.+.| ++++++++|+++.. + +.+ +.+.+|+++.+|.||-|.|.+...
T Consensus 180 ~~~~~~~~~l~~~g-V~v~~~~~v~~i~~--------------------~-~~~-v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 180 EMNQIVEEELKKHE-INLRLNEEVDSIEG--------------------E-ERV-KVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred HHHHHHHHHHHHcC-CEEEeCCEEEEEec--------------------C-CCE-EEEcCCCEEEeCEEEECCCccCCH
Confidence 45566777777776 99999999999854 1 223 566788899999999999987543
No 282
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=82.43 E-value=0.74 Score=46.42 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=37.8
Q ss_pred CcHHHHHHHhcCCCCCCC--cEEEEEcCCCCCCCCCC--CCCCCC-CCCc--eeeecHHHHHHHHHCCCchhh
Q 013000 1 MVGMALACSLASMPLTKH--LSVAIIDSNPALGKSNF--IKKEDP-PDPR--VSTVTPATISFFKEIGAWQYV 66 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g--~~V~viEr~~~~~~~~~--~~~~~~-~~~~--g~~l~~~~~~~L~~lgl~~~~ 66 (451)
+|||++|..|+++ | ++|+|+|+++.+..... ...+.. ..+. -..-.++...+++++|+.+.+
T Consensus 10 iaGL~aA~~L~~~----G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 78 (451)
T PRK11883 10 ITGLSAAYRLHKK----GPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDEL 78 (451)
T ss_pred HHHHHHHHHHHHh----CCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccce
Confidence 5899999999995 6 89999999987632100 000000 0000 011234567899999986543
No 283
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.93 E-value=2.2 Score=42.54 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCeeEEEeCCCcEEEeeEEEeecCCCChhhhh
Q 013000 157 KGHLAKLDLSDGTSLYAKLVVGADGGKSRVREL 189 (451)
Q Consensus 157 ~~~~v~v~~~dg~~~~adlvVgADG~~S~vR~~ 189 (451)
+.....+...||....||.+|-|.|.-=+....
T Consensus 137 n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 137 NAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred CCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 357777888899999999999999975444433
No 284
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=81.92 E-value=4.7 Score=44.21 Aligned_cols=58 Identities=10% Similarity=0.113 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 110 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 110 ~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.+.|.+.+.+.| |+++.+++++++.. ++ .+....|.+.||+++.+|+||-|-|.+...
T Consensus 190 ~~~l~~~L~~~G-V~v~~~~~v~~I~~-----------~~-------~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 190 GEQLRRKIESMG-VRVHTSKNTLEIVQ-----------EG-------VEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred HHHHHHHHHHCC-CEEEcCCeEEEEEe-----------cC-------CCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 456777777776 99999999999853 00 123466888999999999999999986553
No 285
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=81.72 E-value=5.7 Score=40.01 Aligned_cols=58 Identities=7% Similarity=0.173 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+.+.|.+.+.+.+ ++++.+++|++++. .++.+.+...++ ++.+|.||-|-|.....
T Consensus 199 ~~~~~~l~~~l~~~g-V~v~~~~~v~~i~~--------------------~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQG-VDIILNAHVERISH--------------------HENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 456677778888776 99999999999965 334566666555 48899999999987654
No 286
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=81.29 E-value=7.8 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSN 27 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~ 27 (451)
|+|.++|..+++. .|.+|+|||+.
T Consensus 13 ~~G~~aA~~aa~~---~g~~V~lie~~ 36 (486)
T TIGR01423 13 SGGLEAGWNAATL---YKKRVAVIDVQ 36 (486)
T ss_pred hHHHHHHHHHHHh---cCCEEEEEecc
Confidence 6899999999992 18999999985
No 287
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=80.88 E-value=5.9 Score=40.07 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-cEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~ 185 (451)
..+.+.+.+.+.+.+ ++++.+++|++++. +.++.+.+.+.+| +.+.+|.||-|-|....
T Consensus 207 ~~~~~~~~~~l~~~g-I~i~~~~~v~~i~~-------------------~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 207 SMISETITEEYEKEG-INVHKLSKPVKVEK-------------------TVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHHcC-CEEEcCCEEEEEEE-------------------eCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 356677777777776 99999999999965 1123367778788 57999999999998766
Q ss_pred h
Q 013000 186 V 186 (451)
Q Consensus 186 v 186 (451)
.
T Consensus 267 ~ 267 (450)
T TIGR01421 267 T 267 (450)
T ss_pred c
Confidence 5
No 288
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=80.82 E-value=11 Score=39.99 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=21.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSN 27 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~ 27 (451)
|+|.++|..+++. |.+|+|||++
T Consensus 126 ~gG~~aA~~aa~~----G~kV~lie~~ 148 (659)
T PTZ00153 126 VGGHAAAINAMER----GLKVIIFTGD 148 (659)
T ss_pred HHHHHHHHHHHHC----CCcEEEEeCC
Confidence 6899999999994 9999999975
No 289
>PRK07208 hypothetical protein; Provisional
Probab=80.62 E-value=0.97 Score=46.10 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCee-EEEe--CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLA-KLDL--SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~--~dg~--~~~adlvVgADG 181 (451)
..|.+.|.+.+.+.| ++|+++++|+++.. +.++.+ .+.. .+|. .+.||.||.|=.
T Consensus 218 ~~l~~~L~~~l~~~g-~~i~~~~~V~~I~~-------------------~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 218 GQLWETAAEKLEALG-GKVVLNAKVVGLHH-------------------DGDGRIAVVVVNDTDGTEETVTADQVISSMP 277 (479)
T ss_pred chHHHHHHHHHHHcC-CEEEeCCEEEEEEE-------------------cCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 345567777777776 79999999999976 122222 3333 3454 588999998766
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
.+...
T Consensus 278 ~~~l~ 282 (479)
T PRK07208 278 LRELV 282 (479)
T ss_pred HHHHH
Confidence 55444
No 290
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=80.49 E-value=2 Score=43.55 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCC-CeeEEEeCCCcEEEeeEEEeecCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKG-HLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
++|......+.+.+...++.+++.+ .|+++.. +++ ..+.|...+|..+.|+.||-+.|-
T Consensus 97 aDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-------------------e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 97 ADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-------------------EEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred hhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-------------------cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 5555555566666666677888776 7777654 122 357788999999999999999996
Q ss_pred CC
Q 013000 183 KS 184 (451)
Q Consensus 183 ~S 184 (451)
.=
T Consensus 157 FL 158 (621)
T COG0445 157 FL 158 (621)
T ss_pred cc
Confidence 43
No 291
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=80.08 E-value=7.2 Score=39.54 Aligned_cols=58 Identities=21% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC--cEEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG--TSLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg--~~~~adlvVgADG~~S 184 (451)
.++.+.|.+.+.+.+ ++++.+++|+.++. .+..+.+.. +| .++.+|+||-|.|...
T Consensus 211 ~e~~~~l~~~L~~~G-I~i~~~~~V~~i~~--------------------~~~~v~~~~-~g~~~~i~~D~vivA~G~~p 268 (458)
T PRK06912 211 EDIAHILREKLENDG-VKIFTGAALKGLNS--------------------YKKQALFEY-EGSIQEVNAEFVLVSVGRKP 268 (458)
T ss_pred HHHHHHHHHHHHHCC-CEEEECCEEEEEEE--------------------cCCEEEEEE-CCceEEEEeCEEEEecCCcc
Confidence 456677778887776 99999999999865 223344443 44 3689999999999877
Q ss_pred hh
Q 013000 185 RV 186 (451)
Q Consensus 185 ~v 186 (451)
.+
T Consensus 269 ~~ 270 (458)
T PRK06912 269 RV 270 (458)
T ss_pred CC
Confidence 65
No 292
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=79.95 E-value=7.5 Score=39.22 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 184 (451)
.++.+.+.+.+.+ ++++++.+++|+.++. .+..+.+.+++|+ ++++|.|+-|-|+.-
T Consensus 214 ~ei~~~~~~~l~~-~gv~i~~~~~v~~~~~--------------------~~~~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 214 PEISKELTKQLEK-GGVKILLNTKVTAVEK--------------------KDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred HHHHHHHHHHHHh-CCeEEEccceEEEEEe--------------------cCCeEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 7788888888888 4599999999999976 3344899998887 789999999999765
Q ss_pred hh
Q 013000 185 RV 186 (451)
Q Consensus 185 ~v 186 (451)
.+
T Consensus 273 n~ 274 (454)
T COG1249 273 NT 274 (454)
T ss_pred CC
Confidence 54
No 293
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=79.71 E-value=1.2 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=24.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
+||+++|+.|++. |++|.++||.++.
T Consensus 134 vAGitAAl~La~~----G~~v~LVEKepsi 159 (622)
T COG1148 134 VAGITAALELADM----GFKVYLVEKEPSI 159 (622)
T ss_pred HHHHHHHHHHHHc----CCeEEEEecCCcc
Confidence 5899999999995 9999999999987
No 294
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=79.35 E-value=5.6 Score=38.81 Aligned_cols=52 Identities=19% Similarity=0.176 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCC
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKS 184 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S 184 (451)
.+...+.+.+.+.+ ++++.+++|+++.. + .|.+.+|+++.+|+||-|-|...
T Consensus 192 ~~~~~~~~~l~~~g-V~v~~~~~v~~i~~----------------------~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 192 KVRRLVLRLLARRG-IEVHEGAPVTRGPD----------------------G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHHCC-CEEEeCCeeEEEcC----------------------C--eEEeCCCCEEecCEEEEccCCCh
Confidence 45667777777776 99999999998842 2 46677899999999999999754
No 295
>PRK14694 putative mercuric reductase; Provisional
Probab=79.34 E-value=7 Score=39.77 Aligned_cols=58 Identities=12% Similarity=0.221 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+...+.+.+++.| ++++.+++|..++. ++..+.+.+.++ ++.+|.||-|-|.....
T Consensus 218 ~~~~~~l~~~l~~~G-I~v~~~~~v~~i~~--------------------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 218 PAVGEAIEAAFRREG-IEVLKQTQASEVDY--------------------NGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 467777888888876 99999999999865 334455665444 69999999999987765
No 296
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=79.13 E-value=9 Score=37.87 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=32.4
Q ss_pred cccCCEEEEcccccccC----CcchhccccchHHHHHHHHHHHHhhhc
Q 013000 327 YVSKRVVLIGDAAHTVH----PLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 327 ~~~g~v~LvGDAAh~~~----P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
-..+.|+.+||.|...+ |-++| .|++.|..+++.|...+..
T Consensus 289 ~~~~~IFa~GD~A~~~~~~p~P~tAQ---~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 289 PGHPDIFAAGDCAAVIDPRPVPPTAQ---AAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCeEEEeccccCCCCCCCCChhH---HHHHHHHHHHHHHHHHhcC
Confidence 34578999999999887 45555 4678888999999887765
No 297
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=78.76 E-value=8 Score=38.67 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEE-eCCCc--EEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLD-LSDGT--SLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~dg~--~~~adlvVgADG~~ 183 (451)
.++.+.|.+.+++.| ++++.+++|++++. .++.+.+. ..+|. .+.+|.||-|.|..
T Consensus 259 ~rL~~aL~~~l~~~G-v~I~~g~~V~~v~~--------------------~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 259 LRLQNALRRAFERLG-GRIMPGDEVLGAEF--------------------EGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------eCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 356788888888887 89999999999975 23445443 34453 58999999999964
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.52 E-value=6.8 Score=39.82 Aligned_cols=59 Identities=20% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CC--cEEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DG--TSLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg--~~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++++.+++|++++. .++.+.+.+. +| +++.+|.||-|-|
T Consensus 215 ~~~~~~l~~~l~~~g-V~i~~~~~V~~i~~--------------------~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 215 TETAKTLQKALTKQG-MKFKLGSKVTGATA--------------------GADGVSLTLEPAAGGAAETLQADYVLVAIG 273 (466)
T ss_pred HHHHHHHHHHHHhcC-CEEEECcEEEEEEE--------------------cCCeEEEEEEEcCCCceeEEEeCEEEEccC
Confidence 356677778887776 99999999999965 2234555442 23 4799999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
....+
T Consensus 274 ~~pn~ 278 (466)
T PRK06115 274 RRPYT 278 (466)
T ss_pred Ccccc
Confidence 87654
No 299
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=78.49 E-value=9.1 Score=38.35 Aligned_cols=44 Identities=2% Similarity=-0.028 Sum_probs=32.1
Q ss_pred CCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-CcEEE--eeEEEeecCCCC
Q 013000 120 TEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GTSLY--AKLVVGADGGKS 184 (451)
Q Consensus 120 ~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~~~~--adlvVgADG~~S 184 (451)
.+ ++++.+++|+.+.. .+..+.+.-.+ +.++. +|.||-|.|.+.
T Consensus 57 ~g-v~~~~~~~V~~id~--------------------~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 57 RG-IDVKTNHEVIEVND--------------------ERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred cC-CeEEecCEEEEEEC--------------------CCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 34 89988999999864 33556665432 45677 999999999854
No 300
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=78.38 E-value=7.9 Score=38.96 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~ 185 (451)
..+.+.+.+.+++.| ++++.+++|+++.. ++....+.. ++.++.+|+||.|-|....
T Consensus 191 ~~~~~~l~~~l~~~g-I~v~~~~~v~~i~~--------------------~~~~~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENG-VELHLNEFVKSLIG--------------------EDKVEGVVT-DKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCEEEEEec--------------------CCcEEEEEe-CCCEEEcCEEEECcCCCcC
Confidence 455667777787776 99999999999853 223233444 4557999999999998654
No 301
>PRK07846 mycothione reductase; Reviewed
Probab=78.22 E-value=6.1 Score=40.00 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=23.6
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA 365 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~ 365 (451)
..+|..+||+++.. |+ ...|...|..++..|.
T Consensus 292 ~p~IyA~GD~~~~~-~l----~~~A~~~g~~~a~ni~ 323 (451)
T PRK07846 292 AEGVFALGDVSSPY-QL----KHVANHEARVVQHNLL 323 (451)
T ss_pred CCCEEEEeecCCCc-cC----hhHHHHHHHHHHHHHc
Confidence 46899999999743 32 3567788888887775
No 302
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=77.91 E-value=11 Score=39.11 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 184 (451)
+.+...|.+.+.+...+++.-+..++++..+ .+. .-.+.+.....+|+ .+.++-||-|.|...
T Consensus 138 ~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~---------~~~------~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 138 HELLHTLYEQLLKFSGIEIFDEYFVLDLLVD---------DGG------GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhhheec---------CCC------cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 4677888888887544678888899998651 000 00122334455665 678889999998877
Q ss_pred hhh
Q 013000 185 RVR 187 (451)
Q Consensus 185 ~vR 187 (451)
.+.
T Consensus 203 ~~~ 205 (562)
T COG1053 203 RLY 205 (562)
T ss_pred EEE
Confidence 443
No 303
>PRK06370 mercuric reductase; Validated
Probab=77.89 E-value=8.7 Score=38.98 Aligned_cols=59 Identities=7% Similarity=0.075 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe--CC-CcEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL--SD-GTSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~d-g~~~~adlvVgADG~~ 183 (451)
..+.+.+.+.+.+.+ ++++.+++|++++. .++.+.+.+ .+ +.++.+|.||-|-|..
T Consensus 212 ~~~~~~l~~~l~~~G-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 212 EDVAAAVREILEREG-IDVRLNAECIRVER--------------------DGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHHhCC-CEEEeCCEEEEEEE--------------------cCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 356677777777776 99999999999965 223344433 33 3579999999999986
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
...
T Consensus 271 pn~ 273 (463)
T PRK06370 271 PNT 273 (463)
T ss_pred cCC
Confidence 654
No 304
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=77.78 E-value=6.3 Score=39.24 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+.+...+...+.+ |+++.++.+.+++. .+ .++...|.+.||+++.+|+||-.-|+.+.+
T Consensus 255 ~~i~~~~~~y~e~kg-Vk~~~~t~~s~l~~-----------~~-------~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 255 PSIGQFYEDYYENKG-VKFYLGTVVSSLEG-----------NS-------DGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HHHHHHHHHHHHhcC-eEEEEecceeeccc-----------CC-------CCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 566666777777776 99999999999865 11 347788999999999999999999987654
No 305
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=77.48 E-value=9.2 Score=39.09 Aligned_cols=59 Identities=12% Similarity=-0.050 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC---cEEEeeEEEeecCCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---TSLYAKLVVGADGGK 183 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~~~~adlvVgADG~~ 183 (451)
.++.+.+.+.+++.+ ++++.+++++.++. .++.+.|.+.+| +++.+|.||-|-|..
T Consensus 220 ~~~~~~l~~~L~~~g-V~i~~~~~v~~v~~--------------------~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~ 278 (484)
T TIGR01438 220 QDCANKVGEHMEEHG-VKFKRQFVPIKVEQ--------------------IEAKVKVTFTDSTNGIEEEYDTVLLAIGRD 278 (484)
T ss_pred HHHHHHHHHHHHHcC-CEEEeCceEEEEEE--------------------cCCeEEEEEecCCcceEEEeCEEEEEecCC
Confidence 345566777777776 99999999998865 234566777666 379999999999976
Q ss_pred Chh
Q 013000 184 SRV 186 (451)
Q Consensus 184 S~v 186 (451)
..+
T Consensus 279 pn~ 281 (484)
T TIGR01438 279 ACT 281 (484)
T ss_pred cCC
Confidence 543
No 306
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=77.10 E-value=1.5 Score=48.51 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|++ +|++|+|||+.+.+
T Consensus 547 PAGLSAA~~LAr----~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 547 PAGLSAGYFLAR----AGHPVTVFEKKEKP 572 (1012)
T ss_pred HHHHHHHHHHHH----CCCeEEEEeccccc
Confidence 799999999999 59999999998765
No 307
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=77.02 E-value=6.1 Score=39.84 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=22.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||.++|+.+++. |.+|+++|+..
T Consensus 14 paG~~aA~raa~~----G~kvalvE~~~ 37 (454)
T COG1249 14 PAGYVAAIRAAQL----GLKVALVEKGE 37 (454)
T ss_pred HHHHHHHHHHHhC----CCCEEEEeecC
Confidence 7899999999996 88899999996
No 308
>PLN02852 ferredoxin-NADP+ reductase
Probab=76.98 E-value=1.7 Score=44.34 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=29.0
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
.+|+..||+.+ -|. .-|.+++.||...+..|...+..
T Consensus 387 pGvyAaGDi~~--Gp~--gvI~t~~~dA~~ta~~i~~d~~~ 423 (491)
T PLN02852 387 PGLYVVGWLKR--GPT--GIIGTNLTCAEETVASIAEDLEQ 423 (491)
T ss_pred CCEEEeeeEec--CCC--CeeeecHhhHHHHHHHHHHHHHc
Confidence 57999999997 232 26788899999999999887654
No 309
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.78 E-value=1.7 Score=44.43 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=25.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGK 32 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~ 32 (451)
+|||++|..|.++ |++|+|+|.+.....
T Consensus 25 iaGLsAArqL~~~----G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 25 LAGLSAARQLQDF----GFDVLVLEARDRVGG 52 (501)
T ss_pred HHHHHHHHHHHHc----CCceEEEeccCCcCc
Confidence 5899999999996 999999999998854
No 310
>PRK14727 putative mercuric reductase; Provisional
Probab=76.62 E-value=9.4 Score=38.97 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChhh
Q 013000 108 VLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRVR 187 (451)
Q Consensus 108 ~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~vR 187 (451)
.+...|.+.+++.| ++++.+++|+.++. .++.+.+...++ ++.+|.||-|-|......
T Consensus 229 ~~~~~l~~~L~~~G-V~i~~~~~V~~i~~--------------------~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 229 LLGETLTACFEKEG-IEVLNNTQASLVEH--------------------DDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHHhCC-CEEEcCcEEEEEEE--------------------eCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 45667777777776 99999999999865 334566766555 588999999999987653
No 311
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=75.73 E-value=2.5 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=24.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|+++ |++|+|+|+.+.+
T Consensus 133 PAGl~~a~~L~~~----G~~Vtv~e~~~~~ 158 (457)
T COG0493 133 PAGLAAADDLSRA----GHDVTVFERVALD 158 (457)
T ss_pred chHhhhHHHHHhC----CCeEEEeCCcCCC
Confidence 8999999999995 9999999999877
No 312
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=75.66 E-value=14 Score=35.42 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=22.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++||++|..|+++ ++|+++|.+...
T Consensus 18 isGLSAA~~Ls~r-----hdVTLfEA~~rl 42 (447)
T COG2907 18 ISGLSAAWLLSRR-----HDVTLFEADRRL 42 (447)
T ss_pred chhhhhHHhhhcc-----cceEEEeccccc
Confidence 5899999999994 899999999876
No 313
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=74.34 E-value=12 Score=36.47 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=23.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|+|-.+|+..++. |++.+.+|++...
T Consensus 49 pGGyvAAikAaQl----GlkTacvEkr~~L 74 (506)
T KOG1335|consen 49 PGGYVAAIKAAQL----GLKTACVEKRGTL 74 (506)
T ss_pred CchHHHHHHHHHh----cceeEEEeccCcc
Confidence 7899999999995 9999999998766
No 314
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=74.00 E-value=4.3 Score=39.87 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=38.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCC----------CCCCCCcee-eecHHHHHHHHHCCCchhhhh
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKK----------EDPPDPRVS-TVTPATISFFKEIGAWQYVQQ 68 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~----------~~~~~~~g~-~l~~~~~~~L~~lgl~~~~~~ 68 (451)
++||++|+.|++.+ ....|+|+|..+.. .||... +.+.+.+.. -...+++.++..||+.+++..
T Consensus 21 iSGL~aay~L~r~~--p~~~i~l~Ea~~Rv--GGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~ 95 (491)
T KOG1276|consen 21 ISGLCAAYYLARLG--PDVTITLFEASPRV--GGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQP 95 (491)
T ss_pred hhHHHHHHHHHhcC--CCceEEEEecCCcc--cceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeee
Confidence 58999999999952 23456779988654 444211 011111111 112346788899999877765
No 315
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=73.83 E-value=2.3 Score=41.80 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++||++|..|++ .|.+|+|+|+++..
T Consensus 11 ~aGlsaA~~La~----~G~~V~viEk~~~i 36 (377)
T TIGR00031 11 LSGIVLANILAQ----LNKRVLVVEKRNHI 36 (377)
T ss_pred HHHHHHHHHHHh----CCCeEEEEecCCCC
Confidence 589999999998 49999999998655
No 316
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=73.75 E-value=2 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
||||++|+.|++ +|++|+|+|+.+
T Consensus 393 PAGLsAA~~La~----~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 393 PAGFSLSYYLLR----SGHNVTAIDGLK 416 (1028)
T ss_pred HHHHHHHHHHHh----CCCeEEEEcccc
Confidence 799999999999 599999999864
No 317
>PTZ00188 adrenodoxin reductase; Provisional
Probab=73.08 E-value=2.4 Score=42.99 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=22.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||.+|..|.+. .|++|+||||.+.|
T Consensus 49 PAGlyaA~~Ll~~---~g~~VtlfEk~p~p 75 (506)
T PTZ00188 49 PSALYCCKHLLKH---ERVKVDIFEKLPNP 75 (506)
T ss_pred HHHHHHHHHHHHh---cCCeEEEEecCCCC
Confidence 7999999965432 49999999999988
No 318
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.06 E-value=3.2 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
.|+-+|..|++. |.+|+|+++.+.+
T Consensus 10 ig~E~A~~l~~~----g~~vtli~~~~~~ 34 (80)
T PF00070_consen 10 IGIELAEALAEL----GKEVTLIERSDRL 34 (80)
T ss_dssp HHHHHHHHHHHT----TSEEEEEESSSSS
T ss_pred HHHHHHHHHHHh----CcEEEEEeccchh
Confidence 578899999994 9999999999988
No 319
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=71.54 E-value=2.5 Score=44.97 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=27.7
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+.+||+++.. .-+..|+.++..+|..|...+.
T Consensus 617 ~~gVfAaGD~~~g~-----~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 617 NPKIFAGGDAVRGA-----DLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred CCCEEEcCCcCCCC-----cHHHHHHHHHHHHHHHHHHHhC
Confidence 46899999998532 1246799999999999988764
No 320
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=71.44 E-value=7.4 Score=38.57 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+-.++.+.+++.| .+|...++|.+|.. +.+-.+.|.++||++++++.||-=.+.+-..
T Consensus 264 Gavs~aia~~~~~~G-aeI~tka~Vq~Ill-------------------d~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAG-AEIFTKATVQSILL-------------------DSGKAVGVRLADGTEVRSKIVVSNATPWDTF 323 (561)
T ss_pred hHHHHHHHHHHHhcc-ceeeehhhhhheec-------------------cCCeEEEEEecCCcEEEeeeeecCCchHHHH
Confidence 567788999999998 79999999999987 2445688999999999999999766665555
Q ss_pred hhhh
Q 013000 187 RELA 190 (451)
Q Consensus 187 R~~l 190 (451)
-+.+
T Consensus 324 ~kLl 327 (561)
T KOG4254|consen 324 EKLL 327 (561)
T ss_pred HHhC
Confidence 4444
No 321
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=70.67 E-value=5.5 Score=37.66 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++|+.+|..|+++ |.+|.|+||++-..
T Consensus 11 lsG~V~A~~a~~~----gk~VLIvekR~HIG 37 (374)
T COG0562 11 LSGAVIAEVAAQL----GKRVLIVEKRNHIG 37 (374)
T ss_pred hhHHHHHHHHHHc----CCEEEEEeccccCC
Confidence 4799999999995 99999999999773
No 322
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=70.61 E-value=2.7 Score=47.04 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|++ +|++|+|||+.+.+
T Consensus 440 PAGLsaA~~La~----~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 440 PAGLAAAADLVK----YGVDVTVYEALHVV 465 (1006)
T ss_pred HHHHHHHHHHHH----cCCcEEEEecCCCC
Confidence 799999999999 59999999998766
No 323
>PTZ00058 glutathione reductase; Provisional
Probab=70.27 E-value=17 Score=37.89 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-cEEEeeEEEeecCCCCh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-TSLYAKLVVGADGGKSR 185 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-~~~~adlvVgADG~~S~ 185 (451)
.++.+.+.+.+++.| ++++.+++|.+++. ++++.+.+.+.++ +++.+|.||-|-|....
T Consensus 278 ~~i~~~l~~~L~~~G-V~i~~~~~V~~I~~-------------------~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 278 ETIINELENDMKKNN-INIITHANVEEIEK-------------------VKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHHHHHHHHHCC-CEEEeCCEEEEEEe-------------------cCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 456667777777776 99999999999964 1223456665555 47999999999997655
Q ss_pred h
Q 013000 186 V 186 (451)
Q Consensus 186 v 186 (451)
+
T Consensus 338 ~ 338 (561)
T PTZ00058 338 T 338 (561)
T ss_pred c
Confidence 3
No 324
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=69.31 E-value=3 Score=42.23 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=23.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|++ +|++|+|||+.+.+
T Consensus 143 ~aGl~aA~~l~~----~G~~V~vie~~~~~ 168 (449)
T TIGR01316 143 PAGLACASELAK----AGHSVTVFEALHKP 168 (449)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCC
Confidence 689999999999 49999999998765
No 325
>PLN02546 glutathione reductase
Probab=68.68 E-value=19 Score=37.60 Aligned_cols=61 Identities=13% Similarity=0.013 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
..+...+.+.+++.| |+++.++++++++. ..++.+.+...+++...+|.||-|-|.....
T Consensus 293 ~~~~~~l~~~L~~~G-V~i~~~~~v~~i~~-------------------~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 293 EEVRDFVAEQMSLRG-IEFHTEESPQAIIK-------------------SADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHHHHHHHHHCC-cEEEeCCEEEEEEE-------------------cCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 345566677777776 99999999999864 1234456666666555589999999987765
Q ss_pred h
Q 013000 187 R 187 (451)
Q Consensus 187 R 187 (451)
.
T Consensus 353 ~ 353 (558)
T PLN02546 353 K 353 (558)
T ss_pred C
Confidence 3
No 326
>PRK13748 putative mercuric reductase; Provisional
Probab=68.56 E-value=19 Score=37.54 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCCChh
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGKSRV 186 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~S~v 186 (451)
.++...|.+.+.+.| ++++.+++|+.++. .++.+.+...++ ++.+|.||-|-|.....
T Consensus 310 ~~~~~~l~~~l~~~g-I~i~~~~~v~~i~~--------------------~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 PAIGEAVTAAFRAEG-IEVLEHTQASQVAH--------------------VDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCEEEEEEe--------------------cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 456667777777776 99999999999865 334566666555 68999999999986654
No 327
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=68.42 E-value=11 Score=36.51 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=30.4
Q ss_pred cCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC-----cEEEeeEEEeecCC
Q 013000 119 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG-----TSLYAKLVVGADGG 182 (451)
Q Consensus 119 ~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg-----~~~~adlvVgADG~ 182 (451)
..+.++++.+++|++++. +.++++.+++.+. .+..+|.||.|.|.
T Consensus 290 g~~~~~l~~~~~v~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 290 GRGRLRLLPNTEVTSAEQ-------------------DGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp T---SEEETTEEEEEEEE-------------------ES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CCCCeEEeCCCEEEEEEE-------------------CCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 334589999999999987 1225788888752 37899999999995
No 328
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=68.27 E-value=8.8 Score=38.85 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=23.3
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHH
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIA 365 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~ 365 (451)
..+|+.+||++... |+ ...|...|..+++.|.
T Consensus 295 ~~~IyA~GD~~~~~-~l----~~~A~~~g~~~a~ni~ 326 (452)
T TIGR03452 295 ARGVWALGDVSSPY-QL----KHVANAEARVVKHNLL 326 (452)
T ss_pred CCCEEEeecccCcc-cC----hhHHHHHHHHHHHHhc
Confidence 46899999999743 32 3567778888887775
No 329
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=68.24 E-value=3.3 Score=44.89 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.5
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+.+||+++. ..-+-.|+.++..+|..|.+.+.
T Consensus 715 ~~gVfA~GD~~~g-----~~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 715 IPGIYAGGDIVRG-----GATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CCCEEEeCCccCC-----cHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999863 12366899999999999988764
No 330
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=68.10 E-value=8 Score=38.62 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=40.4
Q ss_pred echHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 104 VENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 104 i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
++|...-..+.+.+...++.+|+.+ .|.++.. ...+++ .-....|.+.||+.+.|+.||-..|-
T Consensus 121 iDR~lYkk~MQkei~st~nL~ire~-~V~dliv---------~~~~~~-----~~~~~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 121 IDRKLYKKNMQKEISSTPNLEIREG-AVADLIV---------EDPDDG-----HCVVSGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred hhHHHHHHHHHHHhccCCcchhhhh-hhhheee---------ccCCCC-----ceEEEEEEEecCcEeccceEEEeecc
Confidence 5555555555555555566777766 6666654 122111 11235577889999999999998885
No 331
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.41 E-value=3.5 Score=42.00 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=29.0
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||+++. | .-+..|+.++..+|..|.+.+.+
T Consensus 430 ~~gVfa~GD~~~g--~---~~~~~Av~~G~~AA~~i~~~L~g 466 (471)
T PRK12810 430 NPKVFAAGDMRRG--Q---SLVVWAIAEGRQAARAIDAYLMG 466 (471)
T ss_pred CCCEEEccccCCC--c---hhHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999972 1 13567999999999999888764
No 332
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=67.07 E-value=3.9 Score=41.54 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=22.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNP 28 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~ 28 (451)
|||+++|+.|++. |.+|+||||.+
T Consensus 10 paG~~aA~~aa~~----g~~v~lie~~~ 33 (463)
T TIGR02053 10 AAAFAAAIKAAEL----GASVAMVERGP 33 (463)
T ss_pred HHHHHHHHHHHHC----CCeEEEEeCCc
Confidence 7899999999994 99999999976
No 333
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=66.83 E-value=4 Score=40.58 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
++|+++|+.|++ +|++|+|+|+.+.
T Consensus 10 ~aGl~~A~~l~~----~g~~v~lv~~~~~ 34 (419)
T TIGR03378 10 LAGLSCALRLAE----AGKKCAIIAAGQS 34 (419)
T ss_pred HHHHHHHHHHHH----CCCCEEEEeCCCc
Confidence 479999999999 4999999999863
No 334
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.81 E-value=23 Score=35.99 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC----cEEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG----TSLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg----~~~~adlvVgADG~ 182 (451)
..+.+.+.+.+.+. ++++.+++|+.++. .++.+.+.+.++ +++.+|.||-|-|.
T Consensus 215 ~~~~~~~~~~l~~~--v~i~~~~~v~~i~~--------------------~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 215 KDIVKVFTKRIKKQ--FNIMLETKVTAVEA--------------------KEDGIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred HHHHHHHHHHHhhc--eEEEcCCEEEEEEE--------------------cCCEEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 35556666666654 89999999999965 334566666543 36999999999999
Q ss_pred CChhh
Q 013000 183 KSRVR 187 (451)
Q Consensus 183 ~S~vR 187 (451)
...+.
T Consensus 273 ~pn~~ 277 (471)
T PRK06467 273 VPNGK 277 (471)
T ss_pred cccCC
Confidence 77654
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=64.48 E-value=4.6 Score=40.92 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=28.9
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||++.. ..-+..|+.++..+|..|...+.+
T Consensus 417 ~~~VfA~GD~~~~-----~~~~~~A~~~G~~aA~~I~~~l~g 453 (457)
T PRK11749 417 LPGVFAGGDIVTG-----AATVVWAVGDGKDAAEAIHEYLEG 453 (457)
T ss_pred CCCEEEeCCcCCC-----chHHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999842 134568999999999999887764
No 336
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=64.20 E-value=5 Score=41.47 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=24.7
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
|+|+++|..|++ +|++|+|||+.....
T Consensus 10 p~G~~~a~~l~~----~g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 10 PIGCTYARLCVD----AGLKVAMVEIGAADS 36 (544)
T ss_pred hHHHHHHHHHHH----CCCeEEEEeccCccC
Confidence 689999999999 499999999999874
No 337
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=63.75 E-value=9.1 Score=37.92 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCCCCcEEEEEcCCCCCCCCCC-C-CCC-C--CCCCc--eeeecHHHHHHHHHCCCchhh
Q 013000 5 ALACSLASMPLTKHLSVAIIDSNPALGKSNF-I-KKE-D--PPDPR--VSTVTPATISFFKEIGAWQYV 66 (451)
Q Consensus 5 ~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~-~-~~~-~--~~~~~--g~~l~~~~~~~L~~lgl~~~~ 66 (451)
++|..|++ +|++|+|+|+++.+..... . ..+ . -..+. .....++..++++++|+...+
T Consensus 1 ~AA~~L~~----~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~ 65 (419)
T TIGR03467 1 SAAVELAR----AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRL 65 (419)
T ss_pred ChHHHHHh----CCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhh
Confidence 47899999 4999999999998743321 0 000 0 01111 122357788999999986654
No 338
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=63.04 E-value=27 Score=36.46 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+.+.|.+.+.+.+ ++|+.++.++++.. +++..+.+.. .+|+ .+.|+-||-|.|
T Consensus 119 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~-------------------~~g~v~Ga~~~~~~~g~~~~i~AkaVILATG 178 (565)
T TIGR01816 119 HAILHTLYQQNLKAD-TSFFNEYFALDLLM-------------------EDGECRGVIAYCLETGEIHRFRAKAVVLATG 178 (565)
T ss_pred HHHHHHHHHHHHhCC-CEEEeccEEEEEEe-------------------eCCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence 468888999888776 99999999999875 1223444443 3565 688999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 179 G~~~~ 183 (565)
T TIGR01816 179 GYGRI 183 (565)
T ss_pred Ccccc
Confidence 98764
No 339
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.61 E-value=4.8 Score=42.76 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=27.5
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+..||++... .=+..|+.++..+|..|...+.
T Consensus 600 ~~gVfA~GD~~~g~-----~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 600 LKKVFAGGDAVHGA-----DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred CCCEEEcCCCCCCc-----hHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999997531 1235799999999999988765
No 340
>PLN02568 polyamine oxidase
Probab=62.04 E-value=5.3 Score=41.42 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=28.3
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 368 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~ 368 (451)
++|++.|+|.|...+-+-. -|++++...|+.|....
T Consensus 500 ~~l~FAGEat~~~~~~Tv~---GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 500 LQLLFAGEATHRTHYSTTH---GAYFSGLREANRLLQHY 535 (539)
T ss_pred ccEEEeecccCCCccchHH---HHHHHHHHHHHHHHHHh
Confidence 5899999999887775555 47888888888887654
No 341
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=61.97 E-value=5.4 Score=40.60 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|+||++|..|++ +|++|+|+|+.+.+
T Consensus 151 paGl~aA~~l~~----~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 151 PAGLACADILAR----AGVQVVVFDRHPEI 176 (467)
T ss_pred HHHHHHHHHHHH----cCCeEEEEecCCCC
Confidence 689999999999 59999999999866
No 342
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=61.35 E-value=5.1 Score=42.64 Aligned_cols=38 Identities=11% Similarity=-0.078 Sum_probs=29.6
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhcC
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAVG 371 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~~ 371 (451)
..+|+.+||+++... -+..|+.++..+|..|...+...
T Consensus 466 ~pgVfA~GDv~~g~~-----~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 466 VAGVFAGGDCVTGAD-----IAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred CCCEEEcCCcCCCch-----HHHHHHHHHHHHHHHHHHHHcCC
Confidence 468999999985321 24679999999999999988743
No 343
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=61.08 E-value=30 Score=32.31 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC---CC--cEEEeeEEEeecCCCC
Q 013000 110 HSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS---DG--TSLYAKLVVGADGGKS 184 (451)
Q Consensus 110 ~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---dg--~~~~adlvVgADG~~S 184 (451)
...+.+.+.+..++++++++++++++. .+....+.+. +| .++.+|.||-|.|...
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~--------------------~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVG--------------------DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEc--------------------cCcEEEEEEEecCCCceEEEEccEEEEeeCCCC
Confidence 344556666663499999999999864 2222234332 23 4799999999999765
Q ss_pred h
Q 013000 185 R 185 (451)
Q Consensus 185 ~ 185 (451)
.
T Consensus 239 ~ 239 (300)
T TIGR01292 239 N 239 (300)
T ss_pred C
Confidence 4
No 344
>PLN02529 lysine-specific histone demethylase 1
Probab=61.01 E-value=5.1 Score=42.99 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=23.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
||||++|..|+++ |++|+|+|++....
T Consensus 170 ~aGl~aA~~l~~~----g~~v~v~E~~~~~G 196 (738)
T PLN02529 170 LAGLAAARQLLSF----GFKVVVLEGRNRPG 196 (738)
T ss_pred HHHHHHHHHHHHc----CCcEEEEecCccCc
Confidence 5899999999994 99999999987653
No 345
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=60.88 E-value=6.6 Score=39.57 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=24.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
.+|+++|..|++ +|.+|+++||+....
T Consensus 14 L~e~ilAa~Ls~----~GkkVLhlD~n~~yG 40 (443)
T PTZ00363 14 LKECILSGLLSV----NGKKVLHMDRNPYYG 40 (443)
T ss_pred hHHHHHHhhhhh----CCCEEEEecCCCCcC
Confidence 378999999999 499999999999874
No 346
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=60.53 E-value=5.2 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=24.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++||++|+.|++ +|++|+|+|++..+.
T Consensus 248 ~aGl~aA~~L~~----~g~~v~v~E~~~r~G 274 (808)
T PLN02328 248 LAGLVAARQLLS----MGFKVVVLEGRARPG 274 (808)
T ss_pred HHHHHHHHHHHH----CCCcEEEEeccccCC
Confidence 589999999999 599999999998774
No 347
>PRK10262 thioredoxin reductase; Provisional
Probab=60.50 E-value=32 Score=32.81 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC------cEEEeeEEEeecCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG------TSLYAKLVVGADGG 182 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg------~~~~adlvVgADG~ 182 (451)
+.+.+.+.+.+.+ ++++.++++++++. +......|++.++ +++.+|.||-|-|.
T Consensus 187 ~~~~~~~~l~~~g-V~i~~~~~v~~v~~-------------------~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 187 LIKRLMDKVENGN-IILHTNRTLEEVTG-------------------DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHhhccCCC-eEEEeCCEEEEEEc-------------------CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 5566677776665 99999999999854 0112223444332 36899999999996
Q ss_pred CCh
Q 013000 183 KSR 185 (451)
Q Consensus 183 ~S~ 185 (451)
...
T Consensus 247 ~p~ 249 (321)
T PRK10262 247 SPN 249 (321)
T ss_pred ccC
Confidence 544
No 348
>PRK13984 putative oxidoreductase; Provisional
Probab=60.39 E-value=9.9 Score=40.09 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=28.5
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIA 369 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~ 369 (451)
..+|+.+||+++.. .+-.|+.++..+|..|.+.+.
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L~ 602 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYLR 602 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999643 356799999999999988764
No 349
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.87 E-value=14 Score=35.91 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=30.9
Q ss_pred ccCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 328 VSKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 328 ~~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
...+|+.+||++....+....=+..|+..|..+|..|...+..
T Consensus 270 ~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g 312 (364)
T TIGR03169 270 SHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRG 312 (364)
T ss_pred CCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcC
Confidence 3478999999997643222233456899999999999887753
No 350
>PRK07208 hypothetical protein; Provisional
Probab=59.68 E-value=25 Score=35.79 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=24.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++||++|+.|++ +|++|+|+|+++...
T Consensus 14 isGL~aA~~L~~----~g~~v~v~E~~~~~G 40 (479)
T PRK07208 14 PAGLTAAYELLK----RGYPVTVLEADPVVG 40 (479)
T ss_pred HHHHHHHHHHHH----CCCcEEEEecCCCCC
Confidence 589999999999 599999999998774
No 351
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=59.51 E-value=5.6 Score=39.75 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCEEEEcccccccCC-cchhccccchHHHHHHHHHHHHh
Q 013000 330 KRVVLIGDAAHTVHP-LAGQGVNLGFGDASTLSRIIAEG 367 (451)
Q Consensus 330 g~v~LvGDAAh~~~P-~~g~G~~~al~da~~La~~L~~~ 367 (451)
.|+..+|+...-.+| .-|.|.+.||-.|+..++.+...
T Consensus 381 ~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 381 ENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred cceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 689999999877777 46778888999999999988653
No 352
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=59.51 E-value=39 Score=33.05 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC---C--cEEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g--~~~~adlvVgADG 181 (451)
.++...+.+-+++.+ +++..+++|+..+. ..++.|.|..+| | +++++|++..|-|
T Consensus 252 ~Eisk~~qr~L~kQg-ikF~l~tkv~~a~~-------------------~~dg~v~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 252 GEISKAFQRVLQKQG-IKFKLGTKVTSATR-------------------NGDGPVEIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred HHHHHHHHHHHHhcC-ceeEeccEEEEeec-------------------cCCCceEEEEEecCCCceeEEEeeEEEEEcc
Confidence 445555555555555 99999999999976 133477777765 3 3799999999999
Q ss_pred CCCh
Q 013000 182 GKSR 185 (451)
Q Consensus 182 ~~S~ 185 (451)
++--
T Consensus 312 RrP~ 315 (506)
T KOG1335|consen 312 RRPF 315 (506)
T ss_pred Cccc
Confidence 7544
No 353
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=59.10 E-value=6.3 Score=41.19 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.4
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||++.. | .-+..|+.++..+|..|.+.+..
T Consensus 409 ~~~Vfa~GD~~~g--~---~~v~~Av~~G~~aA~~i~~~L~g 445 (564)
T PRK12771 409 RPGVFAGGDMVPG--P---RTVTTAIGHGKKAARNIDAFLGG 445 (564)
T ss_pred CCCEEeccCcCCC--c---hHHHHHHHHHHHHHHHHHHHHcC
Confidence 4689999999852 2 24567999999999999988864
No 354
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=58.63 E-value=8.3 Score=42.66 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=24.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|-.|-|. |+.|+|+||...+
T Consensus 1795 paglaaadqlnk~----gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1795 PAGLAAADQLNKA----GHTVTVYERSDRV 1820 (2142)
T ss_pred chhhhHHHHHhhc----CcEEEEEEecCCc
Confidence 8999999999996 9999999999877
No 355
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=58.13 E-value=9.2 Score=37.07 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=23.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
|||+.+|..|-+.. .+++|+|+|+.+.|
T Consensus 30 PAGfYtA~~LLk~~--~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 30 PAGFYTAQHLLKRH--PNAHVDIFEKLPVP 57 (468)
T ss_pred chHHHHHHHHHhcC--CCCeeEeeecCCcc
Confidence 89998888876621 47999999999988
No 356
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=56.47 E-value=7.8 Score=37.72 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=27.1
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhh
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 368 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~ 368 (451)
..+|+.+||+++. | .=+..|+.+|..+|..|...+
T Consensus 315 ~~~vyaiGD~~~~--~---~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 315 REGVFAAGDVVTG--P---SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCCEEEEcccccC--c---chHHHHHHHHHHHHHHHHHHH
Confidence 4689999999873 2 136788999999998887665
No 357
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.55 E-value=31 Score=34.16 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc-EEEeeEEEeecCCC-C
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT-SLYAKLVVGADGGK-S 184 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~-~~~adlvVgADG~~-S 184 (451)
.+|.+...+.+.++| |+|+.++.|++++. +.| ++.+|. ++.++.||=|-|.+ |
T Consensus 209 ~~l~~~a~~~L~~~G-V~v~l~~~Vt~v~~----------------------~~v--~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 209 PKLSKYAERALEKLG-VEVLLGTPVTEVTP----------------------DGV--TLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred HHHHHHHHHHHHHCC-CEEEcCCceEEECC----------------------CcE--EEccCCeeEecCEEEEcCCCcCC
Confidence 566666667777777 99999999999943 444 445676 59999999999984 4
Q ss_pred hhhhhh
Q 013000 185 RVRELA 190 (451)
Q Consensus 185 ~vR~~l 190 (451)
++-+.+
T Consensus 264 ~~~~~l 269 (405)
T COG1252 264 PLLKDL 269 (405)
T ss_pred hhhhhc
Confidence 455554
No 358
>PLN02676 polyamine oxidase
Probab=54.79 E-value=7.7 Score=39.68 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=29.0
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
|||.+.|++.+...+-+-+| |++++...|+.|...++.
T Consensus 438 gri~FAGe~ts~~~~g~~eG---A~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 438 GRVYFTGEHTSEKYNGYVHG---AYLAGIDTANDLLECIKK 475 (487)
T ss_pred CceEEeccccccccccchHH---HHHHHHHHHHHHHHHhcc
Confidence 79999999987665544444 788898888888776543
No 359
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=53.68 E-value=53 Score=34.42 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEe---CCCc--EEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDL---SDGT--SLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~---~dg~--~~~adlvVgADG 181 (451)
..+...|.+.+.+.+ ++|+.++.++++.. ++ ++..+.|.. .+|+ .+.|+-||-|.|
T Consensus 126 ~~i~~~L~~~~~~~g-i~i~~~~~~~~Li~-----------~~-------~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG 186 (570)
T PRK05675 126 HALLHTLYQGNLKNG-TTFLNEWYAVDLVK-----------NQ-------DGAVVGVIAICIETGETVYIKSKATVLATG 186 (570)
T ss_pred HHHHHHHHHHHhccC-CEEEECcEEEEEEE-----------cC-------CCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence 568888999888776 99999999999875 00 223444443 4665 688999999999
Q ss_pred CCChh
Q 013000 182 GKSRV 186 (451)
Q Consensus 182 ~~S~v 186 (451)
..+.+
T Consensus 187 G~~~~ 191 (570)
T PRK05675 187 GAGRI 191 (570)
T ss_pred Ccccc
Confidence 98864
No 360
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=53.25 E-value=8.9 Score=39.21 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=29.2
Q ss_pred cCCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 329 SKRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 329 ~g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
..+|+.+||++.. ...+..|+.++..+|..|...+.+
T Consensus 444 ~~gVfAaGD~~~g-----~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 444 IPGVFAAGDCRRG-----QSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCCEEEeeccCCC-----cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4689999999852 123567999999999999988864
No 361
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=52.89 E-value=7.9 Score=40.62 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
+|||++|+.+++ +|.+|+||||.+...
T Consensus 21 ~AGl~AA~~aae----~G~~VivlEk~~~~g 47 (584)
T PRK12835 21 GGGMTAALTAAA----RGLDTLVVEKSAHFG 47 (584)
T ss_pred HHHHHHHHHHHH----CCCcEEEEEcCCCCC
Confidence 479999999999 499999999998653
No 362
>PTZ00052 thioredoxin reductase; Provisional
Probab=52.73 E-value=8.8 Score=39.42 Aligned_cols=23 Identities=35% Similarity=0.219 Sum_probs=21.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSN 27 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~ 27 (451)
|||+++|+.|+++ |.+|+|||+.
T Consensus 15 paG~~AA~~aa~~----G~~V~lie~~ 37 (499)
T PTZ00052 15 SGGMAAAKEAAAH----GKKVALFDYV 37 (499)
T ss_pred HHHHHHHHHHHhC----CCeEEEEecc
Confidence 7999999999994 9999999974
No 363
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=50.24 E-value=46 Score=34.30 Aligned_cols=35 Identities=9% Similarity=0.176 Sum_probs=26.0
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGI 368 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~ 368 (451)
.+|+.+||+++... .-+..|+.++..+|..+...+
T Consensus 478 p~IyAaGDv~~~~~----~~~~~A~~~G~~Aa~~i~~~~ 512 (515)
T TIGR03140 478 PGIFAAGDVTTVPY----KQIIIAMGEGAKAALSAFDYL 512 (515)
T ss_pred CCEEEcccccCCcc----ceEEEEEccHHHHHHHHHHHH
Confidence 57999999986421 335688888888888887654
No 364
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=50.12 E-value=12 Score=35.25 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc----EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT----SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~----~~~adlvVgADG~ 182 (451)
......++..+.+.++++|+.+++|+.|.. +.++ ....+|.+.-.++. ++.++.||-|-|+
T Consensus 192 ~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~---------~~~~------~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGa 256 (296)
T PF00732_consen 192 SSAATTYLPPALKRPNLTLLTNARVTRIIF---------DGDG------GRATGVEYVDNDGGVQRRIVAAKEVILAAGA 256 (296)
T ss_dssp BHHHHHHHHHHTTTTTEEEEESEEEEEEEE---------ETTS------TEEEEEEEEETTTSEEEEEEEEEEEEE-SHH
T ss_pred eehhhcccchhhccCCccEEcCcEEEEEee---------eccc------cceeeeeeeecCCcceeeeccceeEEeccCC
Confidence 444444444555666699999999999965 1110 01223444444554 5678999999987
Q ss_pred -CCh
Q 013000 183 -KSR 185 (451)
Q Consensus 183 -~S~ 185 (451)
+|+
T Consensus 257 i~Tp 260 (296)
T PF00732_consen 257 IGTP 260 (296)
T ss_dssp HHHH
T ss_pred CCCh
Confidence 443
No 365
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=49.63 E-value=34 Score=34.29 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
+|||++|..|-+.+ +.+|+|+|......
T Consensus 31 ~AGLaAA~rLle~g---f~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 31 IAGLAAATRLLENG---FIDVLILEASDRIG 58 (498)
T ss_pred hHHHHHHHHHHHhC---CceEEEEEeccccC
Confidence 58999999999642 46899999998774
No 366
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=47.99 E-value=68 Score=33.71 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEee-EEEeecCCCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYAK-LVVGADGGKS 184 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~ad-lvVgADG~~S 184 (451)
|...|.+.+.+.+ ++|+++++++.+.. ++ .+..+.|... +|. .+.|+ -||-|.|..+
T Consensus 215 ~~~~l~~~~~~~g-v~i~~~~~~~~Li~-----------d~-------~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 215 LVARLRLALKDAG-VPLWLDSPMTELIT-----------DP-------DGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHhCC-ceEEeCCEEEEEEE-----------CC-------CCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 4445666666665 99999999999976 11 1233334332 443 57886 4777888766
Q ss_pred h
Q 013000 185 R 185 (451)
Q Consensus 185 ~ 185 (451)
.
T Consensus 276 ~ 276 (584)
T PRK12835 276 H 276 (584)
T ss_pred C
Confidence 3
No 367
>PRK02106 choline dehydrogenase; Validated
Probab=47.51 E-value=14 Score=38.64 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=22.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
+||+++|..|++. .|++|+|||+.+.
T Consensus 15 ~aG~vvA~rLae~---~g~~VlvlEaG~~ 40 (560)
T PRK02106 15 SAGCVLANRLSED---PDVSVLLLEAGGP 40 (560)
T ss_pred HHHHHHHHHHHhC---CCCeEEEecCCCc
Confidence 4899999999994 4999999999963
No 368
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=47.11 E-value=46 Score=34.44 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-Cc---EEEeeEEEeecC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-GT---SLYAKLVVGADG 181 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-g~---~~~adlvVgADG 181 (451)
|..-...++..+.+.++++|+.+++|+.|.. +++..+.|.+.+ +. ...++.||-|-|
T Consensus 192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~-------------------~~~ra~GV~~~~~~~~~~~~~ak~VIlaAG 252 (532)
T TIGR01810 192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINF-------------------EGNRATGVEFKKGGRKEHTEANKEVILSAG 252 (532)
T ss_pred EEcHHHHHhhhhccCCCeEEEeCCEEEEEEe-------------------cCCeEEEEEEEeCCcEEEEEEeeeEEEccC
Confidence 4454555555566566799999999999986 111233444433 22 357889999999
Q ss_pred C-CCh
Q 013000 182 G-KSR 185 (451)
Q Consensus 182 ~-~S~ 185 (451)
+ +|+
T Consensus 253 ai~SP 257 (532)
T TIGR01810 253 AINSP 257 (532)
T ss_pred CCCCH
Confidence 8 776
No 369
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.21 E-value=41 Score=32.42 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCCC
Q 013000 106 NKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGGK 183 (451)
Q Consensus 106 R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~~ 183 (451)
=..|...|.+.+++.. |++....+.+.++. .. +.++-+.|++++|-...++-||-+.|++
T Consensus 265 Gpkl~~ale~Hv~~Y~-vDimn~qra~~l~~---------a~--------~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 265 GPKLAAALEAHVKQYD-VDVMNLQRASKLEP---------AA--------VEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred chHHHHHHHHHHhhcC-chhhhhhhhhccee---------cC--------CCCccEEEEecCCceeccceEEEecCcc
Confidence 4789999999999886 99999989988864 11 2457899999999999999999999975
No 370
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=44.06 E-value=39 Score=33.90 Aligned_cols=38 Identities=21% Similarity=0.235 Sum_probs=34.2
Q ss_pred ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecCC
Q 013000 123 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADGG 182 (451)
Q Consensus 123 v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG~ 182 (451)
+++++++.|+.+.. ..-+|.+.+|+++.++.+|-|.|.
T Consensus 142 Ie~~~~t~v~~~D~----------------------~~K~l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 142 IELILGTSVVKADL----------------------ASKTLVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred ceEEEcceeEEeec----------------------cccEEEeCCCceeecceEEEeecC
Confidence 89999999999976 445688899999999999999998
No 371
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=42.70 E-value=17 Score=34.63 Aligned_cols=26 Identities=15% Similarity=0.293 Sum_probs=22.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
+|||++|+.|.++ |.+++|+-+..+-
T Consensus 12 LAGltc~l~l~~~----Gk~c~iv~~gQsA 37 (421)
T COG3075 12 LAGLTCGLALQQA----GKRCAIVNRGQSA 37 (421)
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCChhh
Confidence 4899999999995 9999999998764
No 372
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=41.95 E-value=17 Score=31.76 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=19.9
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
.||.+|..|++ +|++|+.+|.++.
T Consensus 11 vGl~~A~~lA~----~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 11 VGLPLAAALAE----KGHQVIGVDIDEE 34 (185)
T ss_dssp THHHHHHHHHH----TTSEEEEE-S-HH
T ss_pred chHHHHHHHHh----CCCEEEEEeCChH
Confidence 59999999999 5999999999875
No 373
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=41.31 E-value=64 Score=30.22 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=22.2
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++|+++|..|++. .+.+|+|||+.+...
T Consensus 10 ~~G~v~A~rLs~~---~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 10 AGGSVVASRLSEA---GNKKVLVLEAGPRYP 37 (296)
T ss_dssp HHHHHHHHHHTTS---TTS-EEEEESSBSCT
T ss_pred HHHHHHHHHHhhC---CCCcEEEEEccccCc
Confidence 3799999999995 248999999998753
No 374
>PLN03000 amine oxidase
Probab=40.76 E-value=17 Score=39.76 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=24.0
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPALG 31 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~~ 31 (451)
++||++|..|++. |++|+|+|++..+.
T Consensus 194 ~aGL~aA~~L~~~----G~~V~VlE~~~riG 220 (881)
T PLN03000 194 LSGLAAARQLMRF----GFKVTVLEGRKRPG 220 (881)
T ss_pred HHHHHHHHHHHHC----CCcEEEEEccCcCC
Confidence 4799999999994 99999999998774
No 375
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=39.46 E-value=25 Score=36.37 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.1
Q ss_pred CcHHHHHHHhcCCCCCCC-cEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKH-LSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g-~~V~viEr~~~ 29 (451)
.||+++|..|++. | ++|+|||+.+.
T Consensus 9 ~aG~vvA~rLs~~----~~~~VlvlEaG~~ 34 (532)
T TIGR01810 9 SAGSVLAGRLSED----VSNSVLVLEAGGS 34 (532)
T ss_pred chHHHHHHHhccC----CCCeEEEEecCCC
Confidence 4899999999995 6 79999999974
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=36.68 E-value=89 Score=31.80 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.6
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|++ +|++|+|||+.+.+
T Consensus 153 pAGl~aA~~l~~----~G~~V~vie~~~~~ 178 (471)
T PRK12810 153 PAGLAAADQLAR----AGHKVTVFERADRI 178 (471)
T ss_pred HHHHHHHHHHHh----CCCcEEEEecCCCC
Confidence 689999999999 59999999998766
No 377
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.25 E-value=25 Score=35.53 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.1
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++|+++|..|.+ +|++|+++|++..+
T Consensus 10 ~sG~s~a~~l~~----~G~~V~~~D~~~~~ 35 (459)
T PRK02705 10 RSGIAAARLLKA----QGWEVVVSDRNDSP 35 (459)
T ss_pred HHHHHHHHHHHH----CCCEEEEECCCCch
Confidence 479999999999 59999999998765
No 378
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=35.90 E-value=1.4e+02 Score=31.99 Aligned_cols=60 Identities=10% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHHHh-hcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC-------C--------cEE
Q 013000 108 VLHSSLLSCM-QNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD-------G--------TSL 171 (451)
Q Consensus 108 ~L~~~L~~~~-~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d-------g--------~~~ 171 (451)
++...+.+.+ ++.| |+|+.+++|.+++. ++ ....+.|.+.+ + +++
T Consensus 354 eis~~l~~~ll~~~G-V~I~~~~~V~~I~~-----------~~-------~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i 414 (659)
T PTZ00153 354 DVAKYFERVFLKSKP-VRVHLNTLIEYVRA-----------GK-------GNQPVIIGHSERQTGESDGPKKNMNDIKET 414 (659)
T ss_pred HHHHHHHHHHhhcCC-cEEEcCCEEEEEEe-----------cC-------CceEEEEEEeccccccccccccccccceEE
Confidence 4555555544 3455 99999999999964 00 11235555421 1 379
Q ss_pred EeeEEEeecCCCChh
Q 013000 172 YAKLVVGADGGKSRV 186 (451)
Q Consensus 172 ~adlvVgADG~~S~v 186 (451)
.+|.||-|-|..-.+
T Consensus 415 ~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 415 YVDSCLVATGRKPNT 429 (659)
T ss_pred EcCEEEEEECcccCC
Confidence 999999999986554
No 379
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=35.24 E-value=47 Score=34.65 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.7
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||+.+|..|++. ...+|+|+|+...+
T Consensus 68 AGcvlAarLSEn---~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 68 AGCVLAARLSEN---PNWSVLLLEAGGDP 93 (623)
T ss_pred hhHHHHHhhccC---CCceEEEEecCCCC
Confidence 799999999996 57999999999877
No 380
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=34.63 E-value=1.1e+02 Score=31.50 Aligned_cols=37 Identities=11% Similarity=0.132 Sum_probs=28.2
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHhhhc
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEGIAV 370 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~~~~ 370 (451)
.+|+.+||+++.. ..-+..|+.++..+|..+...+..
T Consensus 477 p~IyAaGDv~~~~----~k~~~~A~~eG~~Aa~~~~~~l~~ 513 (517)
T PRK15317 477 PGVFAAGDCTTVP----YKQIIIAMGEGAKAALSAFDYLIR 513 (517)
T ss_pred CCEEECccccCCC----CCEEEEhhhhHHHHHHHHHHHHhh
Confidence 5799999999753 233888888888888887776553
No 381
>PLN02976 amine oxidase
Probab=34.22 E-value=24 Score=40.82 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=33.2
Q ss_pred ceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 123 QKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 123 v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
..|++++.|+.|...+..-.. . ...+.+|.|.+.+|+++.||.||.+==
T Consensus 946 L~IrLNtpVtrId~s~~d~~~----~------~s~~dGVtVtTsDGetftADaVIVTVP 994 (1713)
T PLN02976 946 LDIHLNHVVTDVSYGSKDAGA----S------GSSRKKVKVSTSNGSEFLGDAVLITVP 994 (1713)
T ss_pred CCeecCCeEEEEEecCCcccc----c------ccCCCcEEEEECCCCEEEeceEEEeCC
Confidence 359999999999761100000 0 012366899999999999999997643
No 382
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=33.23 E-value=43 Score=24.38 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=29.0
Q ss_pred EcccccccCCcchhccccchHHHH-HHHHHHHHh
Q 013000 335 IGDAAHTVHPLAGQGVNLGFGDAS-TLSRIIAEG 367 (451)
Q Consensus 335 vGDAAh~~~P~~g~G~~~al~da~-~La~~L~~~ 367 (451)
||-|-+.|+|..=+.++.|++||. .|..+-...
T Consensus 19 vG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~a 52 (79)
T PF10819_consen 19 VGQATMSMDPDQLEHATQAVEDAREQLSQAKSHA 52 (79)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999 777776554
No 383
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=32.47 E-value=35 Score=32.59 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
.|||.+|+.|+.+ |.+|.|+|+...-
T Consensus 15 laglvaa~elA~a----G~~V~ildQEgeq 40 (552)
T COG3573 15 LAGLVAAAELADA----GKRVLILDQEGEQ 40 (552)
T ss_pred HHHHHHHHHHHhc----CceEEEEcccccc
Confidence 3799999999995 9999999998765
No 384
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=32.40 E-value=39 Score=35.12 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.3
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
.+|.++|.-|+. +|++|+|+|+...
T Consensus 17 ~aG~~lA~rLs~----~g~~VllLEaG~~ 41 (542)
T COG2303 17 SAGSVLAARLSD----AGLSVLVLEAGGP 41 (542)
T ss_pred chhHHHHHHhcC----CCCeEEEEeCCCC
Confidence 489999999996 6999999999964
No 385
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.73 E-value=1.7e+02 Score=29.01 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=36.0
Q ss_pred CCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCC---C--cEEEeeEEEeecCCCChhhhhh
Q 013000 121 EFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSD---G--TSLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 121 g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d---g--~~~~adlvVgADG~~S~vR~~l 190 (451)
+.+.+..+++|.+++. +.++.+.+.+.. | ++++.|.||-|.|.+=.+-..+
T Consensus 291 ~~v~l~~~~ev~~~~~-------------------~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 291 PDVRLLSLSEVQSVEP-------------------AGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred CCeeeccccceeeeec-------------------CCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 4588888999999975 123437776632 3 3799999999999985444444
No 386
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=28.91 E-value=1.1e+02 Score=29.74 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=23.5
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
++|+.+|..|++ +|++|+|+|+.+.+
T Consensus 28 ~aGl~aA~~l~~----~g~~v~lie~~~~~ 53 (352)
T PRK12770 28 PAGLAAAGYLAC----LGYEVHVYDKLPEP 53 (352)
T ss_pred HHHHHHHHHHHH----CCCcEEEEeCCCCC
Confidence 589999999999 59999999998876
No 387
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=28.38 E-value=2.1e+02 Score=29.84 Aligned_cols=58 Identities=19% Similarity=0.067 Sum_probs=35.2
Q ss_pred cCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC-CCc--EEEeeEEEeecCCCChhhhhh
Q 013000 119 NTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS-DGT--SLYAKLVVGADGGKSRVRELA 190 (451)
Q Consensus 119 ~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-dg~--~~~adlvVgADG~~S~vR~~l 190 (451)
+.++++|+.++.|+.|+.+ +++++ ....+.+.-. +|+ ++.|++||-|-|.--..|=.|
T Consensus 225 ~~~n~~l~~~a~v~~i~~d---------~~~~~-----~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 225 PSERFTLLTNHRCTRLVRN---------ETNES-----EIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred cCCCEEEEcCCEEEEEEeC---------CCCCc-----eeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 5677999999999999771 11000 1122333322 454 689999998888744444433
No 388
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=27.47 E-value=35 Score=33.47 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=17.0
Q ss_pred HHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 6 LACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 6 lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
+|+.|++ +|.+|+||||+..
T Consensus 1 ~A~~La~----~G~~V~vlE~~~~ 20 (381)
T TIGR03197 1 TAYSLAR----RGWQVTLYEQDEA 20 (381)
T ss_pred ChHHHHh----CCCeeEEEeCCCc
Confidence 5889999 5999999999753
No 389
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=27.28 E-value=2.1e+02 Score=28.64 Aligned_cols=46 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred HhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCc--EEEeeEEEeecCCCC
Q 013000 116 CMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGT--SLYAKLVVGADGGKS 184 (451)
Q Consensus 116 ~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~--~~~adlvVgADG~~S 184 (451)
...+.+ ++++.++.|..+. +..+.+...||+ ++.+-++|.|.|...
T Consensus 282 ~f~~~~-I~~~~~t~Vk~V~----------------------~~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 282 QFVRDG-IDLDTGTMVKKVT----------------------EKTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred Hhhhcc-ceeecccEEEeec----------------------CcEEEEEcCCCceeeecceEEEecCCCCC
Confidence 334444 9999999999983 467778777886 789999999999843
No 390
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.03 E-value=1.5e+02 Score=29.88 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.4
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
||||++|..|++ +|++|+|||+.+.+
T Consensus 150 paGl~aA~~l~~----~g~~V~lie~~~~~ 175 (457)
T PRK11749 150 PAGLTAAHRLAR----KGYDVTIFEARDKA 175 (457)
T ss_pred HHHHHHHHHHHh----CCCeEEEEccCCCC
Confidence 589999999999 59999999998765
No 391
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=26.67 E-value=55 Score=27.53 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=20.9
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCC
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPA 29 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~ 29 (451)
.|.++|..|+++ |++|.++.+++.
T Consensus 10 ~G~AlA~~la~~----g~~V~l~~~~~~ 33 (157)
T PF01210_consen 10 WGTALAALLADN----GHEVTLWGRDEE 33 (157)
T ss_dssp HHHHHHHHHHHC----TEEEEEETSCHH
T ss_pred HHHHHHHHHHHc----CCEEEEEeccHH
Confidence 488999999994 999999999853
No 392
>PLN02785 Protein HOTHEAD
Probab=26.65 E-value=49 Score=34.76 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcHHHHHHHhcCCCCCCCcEEEEEcCCCCC
Q 013000 1 MVGMALACSLASMPLTKHLSVAIIDSNPAL 30 (451)
Q Consensus 1 paGl~lA~~L~~~~~~~g~~V~viEr~~~~ 30 (451)
.||+.+|..|++ +.+|+|||+...+
T Consensus 65 ~aG~~lA~~Ls~-----~~~VLllE~G~~~ 89 (587)
T PLN02785 65 TAGCPLAATLSQ-----NFSVLLLERGGVP 89 (587)
T ss_pred HHHHHHHHHHhc-----CCcEEEEecCCCC
Confidence 379999999999 5899999999754
No 393
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=25.38 E-value=2.1e+02 Score=28.91 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCEEEEcccccccCCcchhccccchHHHHHHHHHHHHh
Q 013000 330 KRVVLIGDAAHTVHPLAGQGVNLGFGDASTLSRIIAEG 367 (451)
Q Consensus 330 g~v~LvGDAAh~~~P~~g~G~~~al~da~~La~~L~~~ 367 (451)
.+|+.+||+++. | .-+..|+.++..+|..|.+.
T Consensus 416 ~~VfA~GD~~~g--~---~~v~~Ai~~G~~AA~~I~~~ 448 (449)
T TIGR01316 416 PGVFAGGDIILG--A---ATVIRAMGQGKRAAKSINEY 448 (449)
T ss_pred CCEEEecCCCCC--c---HHHHHHHHHHHHHHHHHHhh
Confidence 479999999852 1 24567889998888888654
No 394
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=22.68 E-value=2.9e+02 Score=27.86 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEeecC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGADG 181 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgADG 181 (451)
++|-|.+.+.+.-.| .++..++.|.++.. + +++..+.|. .+|++++++.||+...
T Consensus 232 GELpQ~FcRl~AV~G-G~Y~L~~~i~~i~~-----------~-------~~g~~~gV~-s~ge~v~~k~vI~dps 286 (438)
T PF00996_consen 232 GELPQAFCRLSAVYG-GTYMLNRPIDEIVV-----------D-------EDGKVIGVK-SEGEVVKAKKVIGDPS 286 (438)
T ss_dssp THHHHHHHHHHHHTT--EEESS--EEEEEE-----------E-------TTTEEEEEE-ETTEEEEESEEEEEGG
T ss_pred ccHHHHHHHHhhhcC-cEEEeCCccceeee-----------e-------cCCeEEEEe-cCCEEEEcCEEEECCc
Confidence 688888888776666 68999999999876 1 122334454 3889999999996543
No 395
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=22.10 E-value=90 Score=29.84 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=24.7
Q ss_pred CCeeEEEeCCCcEEEeeEEEeecCCCChhhh
Q 013000 158 GHLAKLDLSDGTSLYAKLVVGADGGKSRVRE 188 (451)
Q Consensus 158 ~~~v~v~~~dg~~~~adlvVgADG~~S~vR~ 188 (451)
+..-+|...+|+++.+|++|-|-|++=..-+
T Consensus 119 P~~N~v~t~gg~eIsYdylviA~Giql~y~~ 149 (446)
T KOG3851|consen 119 PDKNTVVTRGGEEISYDYLVIAMGIQLDYGK 149 (446)
T ss_pred CCcCeEEccCCcEEeeeeEeeeeeceeccch
Confidence 3556777789999999999999998655444
No 396
>PRK02106 choline dehydrogenase; Validated
Probab=21.52 E-value=1.7e+02 Score=30.56 Aligned_cols=60 Identities=8% Similarity=0.028 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeC--CCc--EEEeeEEEeecCC
Q 013000 107 KVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLS--DGT--SLYAKLVVGADGG 182 (451)
Q Consensus 107 ~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--dg~--~~~adlvVgADG~ 182 (451)
..-...++..+.+.++++|+.++.|+.|.. +++..+.|.+. ++. .+.++.||-|-|+
T Consensus 200 ~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~-------------------~~~~a~GV~~~~~~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 200 WSAARAYLDPALKRPNLTIVTHALTDRILF-------------------EGKRAVGVEYERGGGRETARARREVILSAGA 260 (560)
T ss_pred EChHHHhhccccCCCCcEEEcCCEEEEEEE-------------------eCCeEEEEEEEeCCcEEEEEeeeeEEEccCC
Confidence 333444444455567799999999999987 11122344443 332 4678888888886
Q ss_pred -CCh
Q 013000 183 -KSR 185 (451)
Q Consensus 183 -~S~ 185 (451)
.|+
T Consensus 261 i~TP 264 (560)
T PRK02106 261 INSP 264 (560)
T ss_pred CCCH
Confidence 554
No 397
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=21.15 E-value=1.2e+02 Score=30.81 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCC---c--EEEeeEEEeecCCC
Q 013000 109 LHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDG---T--SLYAKLVVGADGGK 183 (451)
Q Consensus 109 L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg---~--~~~adlvVgADG~~ 183 (451)
...-++.+.++.-++.+..| ++-.+.. . .+..+.|..+|. + ++.+|+||-+.|.-
T Consensus 416 ~yEefY~~~Q~~~gV~fIRG-rvaei~e-----------~--------p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gme 475 (622)
T COG1148 416 DYEEFYVRSQEDYGVRFIRG-RVAEIAE-----------F--------PKKKLIVRVEDTLTGEVKEIEADLVVLATGME 475 (622)
T ss_pred cHHHHHHhhhhhhchhhhcC-ChHHhee-----------C--------CCCeeEEEEEeccCccceecccceEEEeeccc
Confidence 55556777774434888888 5555533 1 334577777763 3 78999999999974
Q ss_pred C-----hhhhhhCCCCCC
Q 013000 184 S-----RVRELAGFKTTG 196 (451)
Q Consensus 184 S-----~vR~~l~~~~~~ 196 (451)
- .+.+.||+...+
T Consensus 476 p~~g~~kia~iLgL~~~~ 493 (622)
T COG1148 476 PSEGAKKIAKILGLSQDE 493 (622)
T ss_pred cCcchHHHHHhcCcccCC
Confidence 3 566777766543
No 398
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=21.07 E-value=68 Score=28.97 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=36.3
Q ss_pred cHHHHHHHhcCCCCCCCcEEEEEcCCCCCCCCCCCCCCCCCCCceeeecHHHHHHHHHCCCc
Q 013000 2 VGMALACSLASMPLTKHLSVAIIDSNPALGKSNFIKKEDPPDPRVSTVTPATISFFKEIGAW 63 (451)
Q Consensus 2 aGl~lA~~L~~~~~~~g~~V~viEr~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~ 63 (451)
.|.++|..|.+ .|++|+++|+++..-..-. ........+..+..-..+|+++|+.
T Consensus 11 vG~~va~~L~~----~g~~Vv~Id~d~~~~~~~~---~~~~~~~~v~gd~t~~~~L~~agi~ 65 (225)
T COG0569 11 VGRSVARELSE----EGHNVVLIDRDEERVEEFL---ADELDTHVVIGDATDEDVLEEAGID 65 (225)
T ss_pred HHHHHHHHHHh----CCCceEEEEcCHHHHHHHh---hhhcceEEEEecCCCHHHHHhcCCC
Confidence 48899999999 5999999999986511000 0012233555555566788888763
No 399
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=20.34 E-value=1.6e+02 Score=29.28 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=42.6
Q ss_pred ceeeechHHHHHHHHHHhhcCCCceEEcCCeeEEEEeCCCCCCcccCCCCCccccccCCCeeEEEeCCCcEEEeeEEEee
Q 013000 100 LGCVVENKVLHSSLLSCMQNTEFQKTIYPSRLTSMALLPSSSSISVDSTPSATTLFTKGHLAKLDLSDGTSLYAKLVVGA 179 (451)
Q Consensus 100 ~~~~i~R~~L~~~L~~~~~~~g~v~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~~~adlvVgA 179 (451)
.++.++-.+|..+ ..|+|-+..|.+|+.+.. +.-.|.++||+++.+|-..-|
T Consensus 255 d~FfvspeDLp~~------~nGGvAvl~G~kvvkid~----------------------~d~~V~LnDG~~I~YdkcLIA 306 (659)
T KOG1346|consen 255 DGFFVSPEDLPKA------VNGGVAVLRGRKVVKIDE----------------------EDKKVILNDGTTIGYDKCLIA 306 (659)
T ss_pred CcceeChhHCccc------ccCceEEEeccceEEeec----------------------ccCeEEecCCcEeehhheeee
Confidence 3456776666543 236699999999999854 334566789999999988889
Q ss_pred cCCCCh
Q 013000 180 DGGKSR 185 (451)
Q Consensus 180 DG~~S~ 185 (451)
.|.+-+
T Consensus 307 TG~~Pk 312 (659)
T KOG1346|consen 307 TGVRPK 312 (659)
T ss_pred cCcCcc
Confidence 997544
Done!