Query 013003
Match_columns 451
No_of_seqs 341 out of 1495
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2442 Uncharacterized conser 100.0 7E-107 1E-111 827.2 25.4 424 17-441 8-462 (541)
2 PF04258 Peptidase_A22B: Signa 100.0 8E-52 1.7E-56 414.8 -0.0 221 220-442 2-245 (298)
3 KOG2443 Uncharacterized conser 100.0 3E-48 6.4E-53 384.0 13.5 230 180-443 35-287 (362)
4 smart00730 PSN Presenilin, sig 100.0 2.9E-39 6.3E-44 316.2 13.7 201 223-444 2-207 (249)
5 cd02132 PA_GO-like PA_GO-like: 100.0 2E-28 4.3E-33 220.3 16.2 134 46-179 1-134 (139)
6 cd02129 PA_hSPPL_like PA_hSPPL 99.9 1E-23 2.2E-28 185.1 11.7 114 47-179 1-117 (120)
7 cd02126 PA_EDEM3_like PA_EDEM3 99.9 2.6E-21 5.6E-26 171.4 12.5 111 66-179 2-121 (126)
8 cd02123 PA_C_RZF_like PA_C-RZF 99.9 9.1E-21 2E-25 173.3 14.5 116 60-179 20-142 (153)
9 cd02127 PA_hPAP21_like PA_hPAP 99.8 1.1E-20 2.4E-25 165.7 12.8 105 70-179 1-111 (118)
10 cd02122 PA_GRAIL_like PA _GRAI 99.8 9.8E-20 2.1E-24 163.8 12.5 106 66-179 17-133 (138)
11 cd04813 PA_1 PA_1: Protease-as 99.8 1.2E-19 2.6E-24 158.9 11.3 103 66-175 5-110 (117)
12 cd02125 PA_VSR PA_VSR: Proteas 99.8 3.3E-19 7.2E-24 158.3 12.7 107 70-179 1-122 (127)
13 cd04818 PA_subtilisin_1 PA_sub 99.8 2.3E-18 4.9E-23 150.1 12.7 109 67-179 1-113 (118)
14 cd04816 PA_SaNapH_like PA_SaNa 99.7 1.5E-16 3.1E-21 139.8 12.8 107 68-179 5-117 (122)
15 cd02130 PA_ScAPY_like PA_ScAPY 99.7 9.2E-16 2E-20 134.7 13.3 108 62-179 7-117 (122)
16 KOG3920 Uncharacterized conser 99.7 6E-17 1.3E-21 145.9 5.5 154 4-177 2-164 (193)
17 cd04817 PA_VapT_like PA_VapT_l 99.7 1.3E-15 2.8E-20 137.2 13.6 94 82-179 35-136 (139)
18 cd02124 PA_PoS1_like PA_PoS1_l 99.6 4.6E-15 1E-19 132.1 12.5 84 90-179 38-124 (129)
19 KOG4628 Predicted E3 ubiquitin 99.6 2.1E-14 4.6E-19 145.6 11.4 106 63-175 35-148 (348)
20 PF02225 PA: PA domain; Inter 99.5 1.4E-14 3E-19 121.5 7.0 90 83-174 6-101 (101)
21 cd00538 PA PA: Protease-associ 99.5 3.5E-13 7.6E-18 117.0 10.0 89 90-179 27-121 (126)
22 cd02133 PA_C5a_like PA_C5a_lik 99.4 6.9E-12 1.5E-16 113.1 12.2 96 82-188 25-123 (143)
23 cd04819 PA_2 PA_2: Protease-as 99.3 5.8E-11 1.3E-15 105.3 11.8 94 83-179 23-122 (127)
24 cd02120 PA_subtilisin_like PA_ 99.2 6.9E-11 1.5E-15 103.4 9.8 82 92-179 36-121 (126)
25 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 3.3E-10 7.1E-15 101.5 8.0 99 81-179 15-129 (134)
26 PF06550 DUF1119: Protein of u 98.9 1.2E-08 2.6E-13 100.7 11.8 115 305-432 96-226 (283)
27 cd02128 PA_TfR PA_TfR: Proteas 98.8 2.1E-08 4.5E-13 94.4 8.9 90 83-175 29-154 (183)
28 COG3389 Uncharacterized protei 98.6 4.2E-08 9.1E-13 94.0 5.3 113 308-431 97-222 (277)
29 cd04822 PA_M28_1_3 PA_M28_1_3: 98.3 6E-06 1.3E-10 75.7 11.1 89 83-174 20-132 (151)
30 cd04814 PA_M28_1 PA_M28_1: Pro 98.2 3.5E-06 7.5E-11 76.5 7.7 57 83-139 20-100 (142)
31 cd02121 PA_GCPII_like PA_GCPII 98.2 6.1E-06 1.3E-10 80.0 9.3 91 83-176 45-189 (220)
32 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 6.6E-06 1.4E-10 74.2 7.6 57 83-139 22-96 (137)
33 cd02131 PA_hNAALADL2_like PA_h 97.9 2.3E-05 4.9E-10 71.7 6.4 74 101-174 37-137 (153)
34 cd04821 PA_M28_1_2 PA_M28_1_2: 94.9 0.034 7.3E-07 51.5 4.4 38 101-138 46-102 (157)
35 KOG2195 Transferrin receptor a 71.5 4.3 9.4E-05 46.0 4.1 37 102-138 182-218 (702)
36 KOG2927 Membrane component of 65.8 6.1 0.00013 41.1 3.4 29 306-334 238-266 (372)
37 COG5540 RING-finger-containing 54.8 9.2 0.0002 39.1 2.5 118 108-248 150-272 (374)
38 PF06541 DUF1113: Protein of u 37.3 1.4E+02 0.003 27.4 7.3 120 230-365 33-154 (157)
39 COG4882 Predicted aminopeptida 32.8 86 0.0019 33.3 5.5 94 102-196 87-205 (486)
No 1
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=100.00 E-value=6.7e-107 Score=827.16 Aligned_cols=424 Identities=50% Similarity=0.831 Sum_probs=399.1
Q ss_pred HHhhcccccccccceeccCCCCCCCCCCcCeEEEEEeeeecCccceeEEecccccCCccccccCCcceEEEEecCCCCCC
Q 013003 17 SLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCC 96 (451)
Q Consensus 17 ~~~~~~~~~~~~~~~~~d~~~p~~p~c~~~f~lv~v~~~v~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC 96 (451)
+++-......++|+.|.++..|++|||+|+||++|+++|+||++..++.++.|+||..++...+.+...++...+|.|.|
T Consensus 8 ~l~g~~~~v~a~~~~~~~~~~~~s~gc~nd~~~l~~~~w~~~~~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~c 87 (541)
T KOG2442|consen 8 LLLGLGSFVTAGDGGHTGNSHPKSPGCSNDFQMLKVPTWVNGVEYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSC 87 (541)
T ss_pred hhhhhhheEeecccccccccccCCCCCcCceEEEeccccccccchhhhhhhhhhcCCcCCCCccccccchhhhcCCcccc
Confidence 33333456678999999999999999999999999999999999999999999999999988877777788899999999
Q ss_pred CCCCCCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhHHHHHHHHhc
Q 013003 97 SMPKHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLN 176 (451)
Q Consensus 97 ~~~~~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~ 176 (451)
+++.+.++|+++++.||+|+|++|+++||++||+|++|+||.+++..|+|++.++..+++||++||++++|+.+.+....
T Consensus 88 s~~~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~ 167 (541)
T KOG2442|consen 88 STLQSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRS 167 (541)
T ss_pred CCCCccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999988888999999999999999999988777
Q ss_pred ccc------------------------ceeeeecceeccchhhHHHHHHHhhccCCCCCCccccccCCcCeeeeccccee
Q 013003 177 TSS------------------------VGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAV 232 (451)
Q Consensus 177 g~~------------------------V~TV~~~s~WS~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~A~ 232 (451)
+.+ |+||++|||||+++++|+..|+++.++|..+++.|+++++|+|.+++|+..|+
T Consensus 168 ~~~V~~~lYaPk~P~vD~~~v~iwlmAVgTVa~ggyWs~~t~~~~~~~a~~~~~d~~s~~~~~~~~~e~~~vd~s~i~~~ 247 (541)
T KOG2442|consen 168 NDNVELALYAPKRPAVDYAMVFIWLMAVGTVACGGYWSGLTEREKAIEADRLLDDDSSSEGNTKETKEEEVVDISPITAV 247 (541)
T ss_pred CCeEEEEEECCCCCCccHHHHHHHHHHHhHhhccchhhhccChhhhhhhhhhcccccccccccccCCccccEEeeeeEEE
Confidence 665 99999999999999999999999999988888888899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCeeeeccccccccchhhhhhhhhhhh
Q 013003 233 LFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTLAVTPFCIAFA 312 (451)
Q Consensus 233 ~Fpv~as~~Ll~Ly~f~~~~~~~ll~~~F~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~ 312 (451)
.|++++|.+|++||||+++ ++|+++++|||+|+.+||+|+.++++|++.+..+.+...|..|+.++..+++.++|++++
T Consensus 248 ~fvv~~c~~LvLlyfF~~~-~V~v~iiif~i~g~~gLy~Cl~~lv~r~~~~~~~~~~~~~~l~~~~~~~l~l~~~Cia~a 326 (541)
T KOG2442|consen 248 FFVVTACGFLVLLYFFYSY-LVYVLIIIFCIGGAQGLYNCLAALVHRLPYGAARFPTLAPRLGNMSYRLLFLSILCIAVA 326 (541)
T ss_pred EehhhhHHHHHHHHHHHHH-HHHHHhhheeecccchHHHHHHHHHhhhhhhcccccccccccCChhHHHHHHHHhhhhee
Confidence 9999999999999999965 999999999999999999999999999876655556677888899999999999999999
Q ss_pred hhhhheeccccceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhhhhheeeeeeccccc--ceeEEEeecCCCCCCC
Q 013003 313 VVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFH--ESVMIVVARGDKSGED 390 (451)
Q Consensus 313 ~~w~~~~~~~~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~--~sVMv~VA~~~~~~~~ 390 (451)
++|+++|||+|+|++||++|||+|+++++.+||||+|+|++||+++|+|||||||+||++|| ||||++||+|+++++|
T Consensus 327 V~W~v~R~e~~AwilqDvLGIalci~vLk~vRLPnlK~~tiLL~c~f~YDiF~VFitp~~t~~geSVMieVA~G~~s~~E 406 (541)
T KOG2442|consen 327 VVWAVFRNEDWAWILQDVLGIALCITVLKTVRLPNLKVCTILLLCLFLYDIFFVFITPFITKNGESVMIEVARGPSSTEE 406 (541)
T ss_pred EEEEEeecCchHHHHHhhHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHhhheeeeehhhccCCceEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CCCEEEEecccc-----CCCCceeeccCcchhhHHHHHHHHHHhhcccCCCCccch
Q 013003 391 GIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPI 441 (451)
Q Consensus 391 ~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~s~~~~~~ 441 (451)
++||+|++||++ ++|++|||||||||++||++||||+|||...++.|++++
T Consensus 407 kiPMlLkVPrl~~s~~~~~~~~~silGFGDIl~PGlLVa~c~RfD~~~~~~~~iYf 462 (541)
T KOG2442|consen 407 KIPMLLKVPRLFFSVLSDPWGGYSILGFGDILVPGLLVAFCLRFDVQVNSVSNIYF 462 (541)
T ss_pred CcceEEEcchhccccccccCCCeeEeeecccccchHHHHHHHHhhhhccccceeEE
Confidence 999999999999 899999999999999999999999999999998666654
No 2
>PF04258 Peptidase_A22B: Signal peptide peptidase; InterPro: IPR007369 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain aspartic endopeptidases belong to MEROPS peptidase family A22 (presenilin family, clan AD): subfamily A22B. The peptidases were originally classified by hierarchical homology to the most conserved member - IMPAS 1. They are also known as signal peptide peptidase (SPP) []. They belong to the I-CliP family of peptidases. SPP cleaves cleaves remnant signal peptides left behind in the membrane by the action of signal peptidase and also plays key roles in immune surveillance and the maturation of certain viral proteins []. SPPs do not require cofactors as demonstrated by expression in bacteria and purification of a proteolytically active form. The C-terminal region defines the functional domain, which is in itself sufficient for proteolytic activity []. ; GO: 0004190 aspartic-type endopeptidase activity, 0016021 integral to membrane; PDB: 1JUF_C 1INQ_C.
Probab=100.00 E-value=8e-52 Score=414.76 Aligned_cols=221 Identities=37% Similarity=0.649 Sum_probs=1.0
Q ss_pred CcCeeeecccceehhhHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHhhcc-----cCCCe
Q 013003 220 VSGVVDINTASAVLFVLVASCFLVMLYKLMSNWF------LELLVILFCIGGVEGLQTCLVALLSRWFRR-----AGESF 288 (451)
Q Consensus 220 ~~~~~~i~~~~A~~Fpv~as~~Ll~Ly~f~~~~~------~~ll~~~F~i~g~~~l~~~l~~~~~~~~~~-----~~~~~ 288 (451)
|++.+++|++||++||++||++|++||++++++. .++++.||+++|+.++..++.+.+.+.++. ....+
T Consensus 2 ~~~~~~is~~~A~~fpv~~S~~L~gLY~~~k~l~~~~i~~~~vl~~~f~~~gv~a~~~~i~~~l~~~~~~~~~~~~~~~~ 81 (298)
T PF04258_consen 2 EEEEETISSKDALIFPVVASCVLLGLYFFFKYLDKDLINIIYVLTVYFCLAGVIALSFLILPFLTYIFPFFPCRSFPWKK 81 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccce
Confidence 5688899999999999999999999999987654 468999999999999888777776654331 11222
Q ss_pred eee--------ccccccccchhhhhhhhhhhhhhhhheeccccceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhh
Q 013003 289 IKV--------PFFGAVSHLTLAVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFM 360 (451)
Q Consensus 289 ~~~--------p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~ 360 (451)
.+. ++.++.+..+++..++|+++++.|+++|++ +|++||++|+|+|+++++.+|+||+|++++||+++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~w~~~~~~--~W~l~nilgi~~~i~~i~~i~l~s~k~~~ilL~~lf~ 159 (298)
T PF04258_consen 82 WKLSFPRRDIKPFSGSFTLSDLLSFLISLAIAVVWYVYRNE--HWILQNILGICFCINIISLIRLPSFKTATILLIGLFL 159 (298)
T ss_dssp ---------------------------------S----------------------------------------------
T ss_pred EEEEEEcccccceeeeeeHHHHHHHHHHHHHHHHHHHhccc--hHHHHhHHHHHHHHHHHHheeccchHHHHHHHHHHHH
Confidence 222 445677888899999999999999998875 5999999999999999999999999999999999999
Q ss_pred hhheeeeeecccccceeEEEeecCCCCCCCCCCEEEEeccccC----CCCceeeccCcchhhHHHHHHHHHHhhcccCCC
Q 013003 361 YDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMFD----PWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSS 436 (451)
Q Consensus 361 YDifwVF~sp~~f~~sVMv~VA~~~~~~~~~~P~~l~~P~~~~----~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~s~ 436 (451)
|||||||+||++||+|||++|||+..++++++|||+++||..+ ..++||||||||||+||+|+++|+|||.+++..
T Consensus 160 YDif~VF~s~~~~g~svM~~VA~~~~~~~~~~P~~l~~P~~~~~~~~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~~~ 239 (298)
T PF04258_consen 160 YDIFWVFISPYFFGTSVMVTVATGGFDAPEKLPIKLQFPRFFDSNSSCPKPFSMLGLGDIVIPGLFIAFCLRFDKSRNKS 239 (298)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhccccCCCchhhhhhccccccccCCCeEEEEeccccccccCCCCeeEeccchHHHHHHHHHHHHHhhHhhccc
Confidence 9999999999999999999999994335578899999999863 457899999999999999999999999999544
Q ss_pred Cccchh
Q 013003 437 HHIPIS 442 (451)
Q Consensus 437 ~~~~~~ 442 (451)
++.++.
T Consensus 240 ~~~Yf~ 245 (298)
T PF04258_consen 240 RKPYFI 245 (298)
T ss_dssp ------
T ss_pred cchHHH
Confidence 444443
No 3
>KOG2443 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3e-48 Score=384.00 Aligned_cols=230 Identities=26% Similarity=0.466 Sum_probs=185.8
Q ss_pred ceeeeecceeccchhhHHHHHHHhhccCCCCCCccccccCCcCeeeecccceeh-hhHHHHHHHHHHHHHhHHH---HHH
Q 013003 180 VGTILCASYWSAWSARETAIEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVL-FVLVASCFLVMLYKLMSNW---FLE 255 (451)
Q Consensus 180 V~TV~~~s~WS~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~A~~-Fpv~as~~Ll~Ly~f~~~~---~~~ 255 (451)
+.+|.+|++||...++| ++++++..+.++.++|.. ||++|||+|++||++++.. ...
T Consensus 35 ~l~i~~GsfRS~~~~~~-------------------~~d~~~~~es~t~~~a~~~fPi~~s~tLl~lyl~fk~ls~~~~~ 95 (362)
T KOG2443|consen 35 LLLIVIGSFRSLNYIKE-------------------NEDKKDKSESITKRDAGKMFPIIGSCTLLLLYLLFKPLSKELIN 95 (362)
T ss_pred HHHHHHHHHHHhhhhhh-------------------hhcccchhhhhhhhhhcccCCcccchHHHHHHHHHHHHHHHHHH
Confidence 56889999999765543 112225666788888888 9999999999999987543 234
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH----hhccc---------CCCeeeeccccccccchhhhhhhhhhhhhhhhheeccc
Q 013003 256 LLVILFCIGGVEGLQTCLVALLSR----WFRRA---------GESFIKVPFFGAVSHLTLAVTPFCIAFAVVWAIYRKVS 322 (451)
Q Consensus 256 ll~~~F~i~g~~~l~~~l~~~~~~----~~~~~---------~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~w~~~~~~~ 322 (451)
+++.||++.|+.++.+.+.|+++. ..|.+ ...+...-+.++++..+++....|..++++|++++|
T Consensus 96 ll~~~ff~~g~~al~~~~~p~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~Ft~~~iv~~vls~~i~v~~ll~~H-- 173 (362)
T KOG2443|consen 96 LLTMYFFFLGVIALLSLLDPFINAFKFLLLPMCQYHLLFPRGPGEKKEFICNGKFTRAQIVALVLSSMIVVWYLLTKH-- 173 (362)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhhhhhcCccchhheeeeccCCcccceeecccccHHHHHHHHHHHHHHHHHHhhhH--
Confidence 889999999999999999999881 12211 111112223456788888888999999999999885
Q ss_pred cceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhhhhheeeeeecccccceeEEEeecCCCCCCCCCCEEEEecccc
Q 013003 323 FAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGDKSGEDGIPMLLKIPRMF 402 (451)
Q Consensus 323 ~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~~sVMv~VA~~~~~~~~~~P~~l~~P~~~ 402 (451)
|++||++|+++|+++|+.+||||+|+|++||.|||+|||||||+ ++|||+|||+.| +|+||++|+..
T Consensus 174 --Wl~nN~lgms~~I~~I~~lrL~s~ktgalLL~gLffYDIfwVFg------TnVMVtVAt~~D-----~PikL~fP~~l 240 (362)
T KOG2443|consen 174 --WLANNLLGMSFCIAGIEFLRLPSLKTGALLLGGLFFYDIFWVFG------TNVMVTVATSLD-----APIKLVFPQKL 240 (362)
T ss_pred --HHHHhHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHheEEEec------CceEEEeecccC-----CceEEecchhh
Confidence 99999999999999999999999999999999999999999995 569999999976 99999999976
Q ss_pred CCC----CceeeccCcchhhHHHHHHHHHHhhcccC--CCCccchhh
Q 013003 403 DPW----GGYSIIGFGDILLPGLIIAFSLRFKLSDL--SSHHIPISA 443 (451)
Q Consensus 403 ~~~----~~~s~LGlGDIviPGl~i~~~~rfD~~~~--s~~~~~~~~ 443 (451)
... .+||||||||||+||+|+|+++|||.++. |+++.++..
T Consensus 241 ~~~~~~as~fsMLGLGDIviPGiflAl~lRfD~~k~~~s~~~~YF~~ 287 (362)
T KOG2443|consen 241 LFPGLTASNFSMLGLGDIVIPGIFLALVLRFDIRKKRNSKVRTYFHN 287 (362)
T ss_pred ccCCCccccceeccccchhhHHHHHHHHHHhhHHHHhcccCceEEEE
Confidence 432 35999999999999999999999998853 334545433
No 4
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=100.00 E-value=2.9e-39 Score=316.24 Aligned_cols=201 Identities=35% Similarity=0.542 Sum_probs=171.5
Q ss_pred eeeecccceehhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCCeeeeccccccccchh
Q 013003 223 VVDINTASAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRAGESFIKVPFFGAVSHLTL 302 (451)
Q Consensus 223 ~~~i~~~~A~~Fpv~as~~Ll~Ly~f~~~~~~~ll~~~F~i~g~~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~l 302 (451)
.+.+|+++++.||+++|++|++||++++++ +..+.++|+++|+.+++.++.+..... .+..+.
T Consensus 2 ~~~~n~~~~i~fii~~s~~Ll~Ly~~~~~~-~i~~~~~f~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 64 (249)
T smart00730 2 YSLLNSLVAIVFPIVATFVLVLLYKFFKYL-VIVLVIYFSSLGVLFLYSLLYPLEVFR----------------VDYPTL 64 (249)
T ss_pred cccccHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHH
Confidence 356789999999999999999999999776 888899999999999999988765432 233455
Q ss_pred hhhhhhhhhhhhhhheeccccceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhhhhheeeeeecccccceeEEEee
Q 013003 303 AVTPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVA 382 (451)
Q Consensus 303 ~~~~~~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~~sVMv~VA 382 (451)
+...++++++.+|.+++| ++|+.||++|+++|+.+++.+|+||+|++++||+++|+|||||||+||. +++|||+||
T Consensus 65 ~~~~~~~~v~~~~~~~~~--~~w~~~~~lgi~~~~~~~~~~~l~~~~~~~iLL~~l~iYDif~Vf~t~~--~~~vMv~vA 140 (249)
T smart00730 65 LILLLNFAVVGFWCIHRK--GAWIQQDLIGISLCMAILFILRLPSEWTAWILLGALFIYDIFAVFGTPG--PLRVMVEVA 140 (249)
T ss_pred HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHheeecCCC--CchHHhhHh
Confidence 667788888999998886 6899999999999999999999999999999999999999999999997 899999999
Q ss_pred cCCCCCCCCCCEEEEecccc-----CCCCceeeccCcchhhHHHHHHHHHHhhcccCCCCccchhhh
Q 013003 383 RGDKSGEDGIPMLLKIPRMF-----DPWGGYSIIGFGDILLPGLIIAFSLRFKLSDLSSHHIPISAL 444 (451)
Q Consensus 383 ~~~~~~~~~~P~~l~~P~~~-----~~~~~~s~LGlGDIviPGl~i~~~~rfD~~~~s~~~~~~~~~ 444 (451)
|+.+...|.+|+++..||.. +..++++|||+||||+||+++++|+|||..+++.+....+++
T Consensus 141 ~~~~~~~~~~P~ll~~p~~~~~~~~~~~~~~~~LGLGDiv~Pgilv~~a~~fd~~~~~~~~yf~~~~ 207 (249)
T smart00730 141 TGRDEPIKVFPALLYVPRLVVSFEDDEEGRFSMLGLGDIVFPGILVASAARFDVSVRSDSNYFLACF 207 (249)
T ss_pred ccCCCCcccCChhhcccccccccccCCCCccceecCCCeeeHHHHHHHHHHhhhcccCCcccHHHHH
Confidence 99863325689999999842 234689999999999999999999999988655544444443
No 5
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.96 E-value=2e-28 Score=220.26 Aligned_cols=134 Identities=56% Similarity=0.933 Sum_probs=122.5
Q ss_pred CeEEEEEeeeecCccceeEEecccccCCccccccCCcceEEEEecCCCCCCCCCCCCCcceEEEEEcCCCCHHHHHHHHH
Q 013003 46 DFVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCKFTTKANIAE 125 (451)
Q Consensus 46 ~f~lv~v~~~v~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~~lsG~IvLV~RG~CsF~~Ka~nAq 125 (451)
+|++|+|.+|.+|.+.++|.+.+|+||..+|++..++.+++++.++|.++|++.+++++|+|+||+||+|+|.+|++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~~~g~IvLV~RG~C~F~~K~~nA~ 80 (139)
T cd02132 1 PFQLVKVQNWVDGDEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSKLSGSIALVERGECAFTEKAKIAE 80 (139)
T ss_pred CceEEEeeeccCCccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcccCCeEEEEECCCCCHHHHHHHHH
Confidence 59999999999999999999999999999998877788999999999999999988999999999999999999999999
Q ss_pred HcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 126 AAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 126 ~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
++||+++||||+.++...|.+.++++..+++||+++|++++|+.|++++++|.+
T Consensus 81 ~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~ 134 (139)
T cd02132 81 AGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKK 134 (139)
T ss_pred HcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCc
Confidence 999999999999877777765444444568999999999999999999998875
No 6
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.90 E-value=1e-23 Score=185.09 Aligned_cols=114 Identities=21% Similarity=0.386 Sum_probs=98.1
Q ss_pred eEEEEEeeeecCccceeEEecccccCCccccccCCcceEEEEecCCCCCCCCCC---CCCcceEEEEEcCCCCHHHHHHH
Q 013003 47 FVLVKVQTWIDGIENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK---HKYAGDVIMVDRGNCKFTTKANI 123 (451)
Q Consensus 47 f~lv~v~~~v~g~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~---~~lsG~IvLV~RG~CsF~~Ka~n 123 (451)
||+.|+++| ..+|++..++...||+.++|..||++.+ .+++|+|+||+||+|+|.+|++|
T Consensus 1 ~~~~~~~~~-----------------~~l~~~~~~~~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~ 63 (120)
T cd02129 1 YCILYNSQW-----------------ASLPSDLDKATLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARL 63 (120)
T ss_pred CcEEECCcc-----------------eECCcchhhCcceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHH
Confidence 899999999 4799998899999999999999999887 47899999999999999999999
Q ss_pred HHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 124 AEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 124 Aq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
||++||+|+|||||++.. .+ .+..+...+++||++||++++|++|++.+.++.+
T Consensus 64 Aq~aGA~aVII~nn~~~~-~~-~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~~~~ 117 (120)
T cd02129 64 AQSLGAEGLLIVSRERLV-PP-SGNRSEYEKIDIPVALLSYKDMLDIQQTFGDSVK 117 (120)
T ss_pred HHHCCCCEEEEEECCCCC-CC-CCCCCCCcCCcccEEEEeHHHHHHHHHHhccCcE
Confidence 999999999999997642 11 1112223678999999999999999999986653
No 7
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.86 E-value=2.6e-21 Score=171.38 Aligned_cols=111 Identities=24% Similarity=0.460 Sum_probs=92.7
Q ss_pred ecccccCCccccccCCcceEEEEecCCCCCCCCCCC--CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc---
Q 013003 66 GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--- 140 (451)
Q Consensus 66 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~--- 140 (451)
+.+|+||.++|... ...++|+.++|.++|++.++ +++|||+|++||+|+|.+|+++||++||+|+||+|+.++
T Consensus 2 ~~pa~FG~~~~~~~--~~~g~l~~~~p~~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~ 79 (126)
T cd02126 2 AGPAQFGMDLTGDK--AGVGRVVKAKPYRACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSS 79 (126)
T ss_pred CCCcccCCcCCCCC--CceEEEEeCCchhcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 46899999998742 35779999999999998864 689999999999999999999999999999999987643
Q ss_pred ----ccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 141 ----LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 141 ----l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
.+.|.++. ....+++||+++|++++|+.|++.++++.+
T Consensus 80 ~~~~~~~m~~~~-~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~ 121 (126)
T cd02126 80 DTAPMFAMSGDG-DSTDDVTIPVVFLFSKEGSKLLAAIKEHQN 121 (126)
T ss_pred cccceeEeecCC-CCCCCCeEEEEEEEHHHHHHHHHHHHhCCc
Confidence 34565432 122468999999999999999999998764
No 8
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.85 E-value=9.1e-21 Score=173.28 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=99.0
Q ss_pred cceeEEecccccCCccccccCCcceEEEEecCCCCCCCCCC------CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEE
Q 013003 60 ENEEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK------HKYAGDVIMVDRGNCKFTTKANIAEAAGASALL 133 (451)
Q Consensus 60 e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~------~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avI 133 (451)
+..++.+.+|+||...+. ++..++|+.++|.+||++.+ ++.+|+|+||+||+|+|.+|++|||++||+|+|
T Consensus 20 ~~~~~~~~~A~FG~~~~~---~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avI 96 (153)
T cd02123 20 LTDEFDDLPANFGPIPPG---SGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAI 96 (153)
T ss_pred ccceEeeecccCCCCCCC---CceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEE
Confidence 667899999999988774 34678899999999999876 468899999999999999999999999999999
Q ss_pred EEeccCc-ccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 134 IINNQKE-LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 134 V~n~~~~-l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
|+|++++ +..|.+++.+ ..+++||+++|++++|+.|++.+++++.
T Consensus 97 I~n~~~~~~~~m~~~~~~-~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 97 VYNDESNDLISMSGNDQE-IKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EEECCCCcceeccCCCCC-CcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9999754 5667654222 2578999999999999999999988765
No 9
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.85 E-value=1.1e-20 Score=165.70 Aligned_cols=105 Identities=27% Similarity=0.494 Sum_probs=89.1
Q ss_pred ccCCccccccCCcceEEEEecCCCCCCCCCCC--CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc----ccc
Q 013003 70 RFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE----LYK 143 (451)
Q Consensus 70 ~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~--~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~----l~~ 143 (451)
.||..++.+. ..++|+.++|.++|++.++ +++|+|+||+||+|+|.+|+++||++||+|+||||+.++ .+.
T Consensus 1 ~~~~~~~~~~---~~~~lv~~~p~~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~ 77 (118)
T cd02127 1 DFGTIFNTRY---KHVPLVPADPLEACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVE 77 (118)
T ss_pred CCCccccccc---cceEEEECCccccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceE
Confidence 4888888754 5679999999999998763 689999999999999999999999999999999998643 245
Q ss_pred cccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 144 MVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 144 m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
|.++ +...+++||+++|++++|+.|++.+++|..
T Consensus 78 m~~~--~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~ 111 (118)
T cd02127 78 MIQD--DSSRRADIPAAFLLGKNGYMIRKTLERLGL 111 (118)
T ss_pred ecCC--CCCCCceEEEEEecHHHHHHHHHHHHcCCc
Confidence 6543 234568999999999999999999998875
No 10
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.82 E-value=9.8e-20 Score=163.84 Aligned_cols=106 Identities=24% Similarity=0.321 Sum_probs=87.5
Q ss_pred ecccccCCccccccCCcceEEEEecC---CCCCCCCCCC-----CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEec
Q 013003 66 GVGARFGTTIVSKEKNANQIHLTLSH---PRDCCSMPKH-----KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINN 137 (451)
Q Consensus 66 ~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~-----~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~ 137 (451)
-.+|+||.++|..+ ..+.|+.+. +.+||++.+. +++|+||||+||+|+|.+|++|||++||+++||||+
T Consensus 17 ~~~a~fg~~~~~~~---~~G~l~~~~~~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~ 93 (138)
T cd02122 17 TESGRYGEHSPKEE---AKGLVVVPDPPNDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNN 93 (138)
T ss_pred ccccccCCCCCCCc---cEEEEecCCCCCCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEEC
Confidence 45899999998765 455665444 5899998764 578999999999999999999999999999999999
Q ss_pred cC-c--ccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 138 QK-E--LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 138 ~~-~--l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
.+ . .+.|... + ..+||+++|++.+|+.|++++++|.+
T Consensus 94 ~~~~~~~~~m~~~--~---~~~ip~v~Is~~~G~~l~~~l~~G~~ 133 (138)
T cd02122 94 PGTGNETVKMSHP--G---TGDIVAIMITNPKGMEILELLERGIS 133 (138)
T ss_pred CCCCCceeeccCC--C---CCcceEEEEcHHHHHHHHHHHHcCCc
Confidence 75 2 4556532 1 24789999999999999999999876
No 11
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.81 E-value=1.2e-19 Score=158.92 Aligned_cols=103 Identities=25% Similarity=0.422 Sum_probs=84.8
Q ss_pred ecccccCCccccccCCcceEEEEecCCCCCCCCCC-CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc--cc
Q 013003 66 GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--LY 142 (451)
Q Consensus 66 ~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~--l~ 142 (451)
++.|+||+.+....++. ..++|.++|++.+ ++++|+|+||+||+|+|.+|++|||++||+++||||+.++ +.
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~p~~gC~~~~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~ 79 (117)
T cd04813 5 GRYASFSPILNPHLRGS-----YKVSPTDACSLQEHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLI 79 (117)
T ss_pred ccccccCCccCcccccc-----ccCCCCCCCCCCCcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccce
Confidence 47899999987654322 2378999999886 5799999999999999999999999999999999998753 44
Q ss_pred ccccCCCCCCCCcceeEEEechhhHHHHHHHHh
Q 013003 143 KMVCDPDETDLDIHIPAVMMPQDAGASLEKMLL 175 (451)
Q Consensus 143 ~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~ 175 (451)
.|.+. +...+++||+++|++++|+.|++++.
T Consensus 80 ~m~~~--~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 80 TMFSN--GDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred ecccC--CCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 56543 22457899999999999999988765
No 12
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.80 E-value=3.3e-19 Score=158.25 Aligned_cols=107 Identities=27% Similarity=0.361 Sum_probs=84.7
Q ss_pred ccCCccccccCCcceEEEEec-CCCCCCCCCCC---------CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccC
Q 013003 70 RFGTTIVSKEKNANQIHLTLS-HPRDCCSMPKH---------KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQK 139 (451)
Q Consensus 70 ~FG~~lp~~~~~~~~~~Lv~~-~p~daC~~~~~---------~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~ 139 (451)
.||.+. +.. ...+.|+.+ ++.++|++... ..+++|+||+||+|+|.+|++|||++||+++||||+.+
T Consensus 1 ~FG~~~-yg~--~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~ 77 (127)
T cd02125 1 NFGLPQ-YGG--TLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVD 77 (127)
T ss_pred CCCCCC-cCC--eeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCC
Confidence 377543 322 245667766 57899998763 36789999999999999999999999999999999976
Q ss_pred c-ccccccCCC----CCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 140 E-LYKMVCDPD----ETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 140 ~-l~~m~~~~~----~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
+ +..|.+..+ +...+++||+++|++++|+.|++.+++|.+
T Consensus 78 ~~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~ 122 (127)
T cd02125 78 EPLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEM 122 (127)
T ss_pred CccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCe
Confidence 5 456754322 123568999999999999999999999875
No 13
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.78 E-value=2.3e-18 Score=150.11 Aligned_cols=109 Identities=33% Similarity=0.501 Sum_probs=93.0
Q ss_pred cccccCCccccccCCcceEEEEecCCCCCCCCCC--CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc--cc
Q 013003 67 VGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK--HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE--LY 142 (451)
Q Consensus 67 ~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~--l~ 142 (451)
++|+||+.++........++++.++|.++|++.. ++++|||+|++||+|+|.+|+++|+++||+|+|++|+.++ .+
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~ 80 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPI 80 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcce
Confidence 4799999998755456789999999999999886 4799999999999999999999999999999999998764 34
Q ss_pred ccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 143 KMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 143 ~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
.|..+ .....||+++|++++|+.|++++++|.+
T Consensus 81 ~~~~~----~~~~~iP~v~V~~~~g~~l~~~l~~g~~ 113 (118)
T cd04818 81 TMGGD----DPDITIPAVMISQADGDALKAALAAGGT 113 (118)
T ss_pred eccCC----CCCCEEeEEEecHHHHHHHHHHHhcCCc
Confidence 45322 1346799999999999999999998764
No 14
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.70 E-value=1.5e-16 Score=139.83 Aligned_cols=107 Identities=23% Similarity=0.438 Sum_probs=84.5
Q ss_pred ccccCCccccccCCcceEEEEecCC--CCCCCCCC---CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc-
Q 013003 68 GARFGTTIVSKEKNANQIHLTLSHP--RDCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL- 141 (451)
Q Consensus 68 ~A~FG~~lp~~~~~~~~~~Lv~~~p--~daC~~~~---~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l- 141 (451)
...|++..|. ++.+++++..++ .++|++.+ .+++|||+|++||+|+|.+|++|||++||+++|++|+.++.
T Consensus 5 ~~~~~~~~~~---~gi~~~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 5 SLSYSPSTPP---GGVTAPLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred EEeccCCCCC---CCcEEEEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 4567766664 356788888765 58999865 47999999999999999999999999999999999987632
Q ss_pred cccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 142 YKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 142 ~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
..+.-. .......||+++|++++|+.|++++++|.+
T Consensus 82 ~~~~~~--~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~ 117 (122)
T cd04816 82 TAGTLG--APNIDLKVPVGVITKAAGAALRRRLGAGET 117 (122)
T ss_pred cccccc--CCCCCCeeeEEEEcHHHHHHHHHHHcCCCE
Confidence 111111 112456899999999999999999998875
No 15
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.67 E-value=9.2e-16 Score=134.65 Aligned_cols=108 Identities=25% Similarity=0.353 Sum_probs=82.4
Q ss_pred eeEEecccccCCccccccCCcceEEEEecCCCCCCCCCC--CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEecc-
Q 013003 62 EEFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK--HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQ- 138 (451)
Q Consensus 62 ~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~--~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~- 138 (451)
.+|...+..|.+. . +.+++++.. +.++|++.+ .+++|||+||+||+|+|.+|++|||++||+++||||+.
T Consensus 7 ~~~~~~~~~~~~~---~---~~~g~lv~~-~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 7 EAIPTTAFTYSPA---G---EVTGPLVVV-PNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEEeeeecccCCC---C---CcEEEEEEe-CCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 4455555444433 1 246788776 577999765 47999999999999999999999999999999999987
Q ss_pred CcccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 139 KELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 139 ~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
+...... .....+..||+++|++++|+.|++.+++|++
T Consensus 80 ~~~~~~~---~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~ 117 (122)
T cd02130 80 AGGLSGT---LGEPSGPYVPTVGISQEDGKALVAALANGGE 117 (122)
T ss_pred Ccccccc---cCCCCCCEeeEEEecHHHHHHHHHHHhcCCc
Confidence 3332211 1112356899999999999999999999876
No 16
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.66 E-value=6e-17 Score=145.90 Aligned_cols=154 Identities=23% Similarity=0.336 Sum_probs=118.6
Q ss_pred ccchhhHHHHHHHHHhhcccccccccceeccCCCCCCCCCCcCeEEEEEeeeecCccceeEEeccc-ccCCccccccCCc
Q 013003 4 KRLSWVLFPVAVVSLVCYPASVTAGDIVHDDDLAPKKPGCENDFVLVKVQTWIDGIENEEFVGVGA-RFGTTIVSKEKNA 82 (451)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~p~c~~~f~lv~v~~~v~g~e~~~~~~~~A-~FG~~lp~~~~~~ 82 (451)
+|++|++|.+.|...+.++... +..+..+|+. +- +-..++.-..+|...+| .||...|+..+
T Consensus 2 ~p~gWl~l~~~L~~~vaa~~~~--~~~v~~qD~~-----------~F--~vlsP~~l~Yty~~~pAkdfG~~F~~r~e-- 64 (193)
T KOG3920|consen 2 KPRGWLLLSFLLIIQVAAAKIP--YEEVENQDNM-----------LF--TVLSPYTLAYTYQMKPAKDFGVHFPDRFE-- 64 (193)
T ss_pred CcceehHHHHHHHHHHHHccCC--cceeeecceE-----------EE--EecCcccEEEEEEecchhhhccccchhhc--
Confidence 6899999999998888776543 3333333332 22 22235566778888899 59999998653
Q ss_pred ceEEEEecCCCCCCCCCCC--CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc------ccccccCCCCCCCC
Q 013003 83 NQIHLTLSHPRDCCSMPKH--KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE------LYKMVCDPDETDLD 154 (451)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~~--~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~------l~~m~~~~~~~~~~ 154 (451)
..+|+.++|..||+.+.+ ...|.|+|++||+|+|..|.+++|++||.++||-++... .++|..+ ++..+
T Consensus 65 -~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D--~sq~~ 141 (193)
T KOG3920|consen 65 -NLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPD--ESQDR 141 (193)
T ss_pred -CcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCc--ccccc
Confidence 579999999999999875 578899999999999999999999999999999987532 3578753 33467
Q ss_pred cceeEEEechhhHHHHHHHHhcc
Q 013003 155 IHIPAVMMPQDAGASLEKMLLNT 177 (451)
Q Consensus 155 i~IPvv~Is~~~G~~L~~~L~~g 177 (451)
-+||++++-..+|-.++..|+.-
T Consensus 142 AniPa~fllg~~Gy~ir~sL~r~ 164 (193)
T KOG3920|consen 142 ANIPAVFLLGVTGYYIRVSLKRY 164 (193)
T ss_pred cCCceEEEeccceEEEehhHHHh
Confidence 89999999999998887776543
No 17
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.66 E-value=1.3e-15 Score=137.17 Aligned_cols=94 Identities=23% Similarity=0.289 Sum_probs=74.6
Q ss_pred cceEEEEecCCCCCCCCCCCCCcceEEEEEcCCCC-----HHHHHHHHHHcCCcEEEEEecc--Cccc-ccccCCCCCCC
Q 013003 82 ANQIHLTLSHPRDCCSMPKHKYAGDVIMVDRGNCK-----FTTKANIAEAAGASALLIINNQ--KELY-KMVCDPDETDL 153 (451)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~~~~lsG~IvLV~RG~Cs-----F~~Ka~nAq~aGA~avIV~n~~--~~l~-~m~~~~~~~~~ 153 (451)
..+++|+..... +|+....+++|||+||+||+|+ |.+|+++||++||+|+|||||. ++.. .+.++ ...
T Consensus 35 ~~tg~lv~~g~~-g~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~---~~~ 110 (139)
T cd04817 35 SATGSLYYCGTS-GGSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVD---TNN 110 (139)
T ss_pred cceEEEEEccCC-CccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccC---CCC
Confidence 456788877644 4755456899999999999999 9999999999999999999997 4433 22222 112
Q ss_pred CcceeEEEechhhHHHHHHHHhcccc
Q 013003 154 DIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 154 ~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
+++||+++|++++|++|++++.++.+
T Consensus 111 ~~~IP~v~is~~dG~~L~~~l~~~~t 136 (139)
T cd04817 111 DTTIPSVSVDRADGQALLAALGQSTT 136 (139)
T ss_pred CceEeEEEeeHHHHHHHHHHhcCCCe
Confidence 57999999999999999999976654
No 18
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.62 E-value=4.6e-15 Score=132.11 Aligned_cols=84 Identities=31% Similarity=0.379 Sum_probs=68.2
Q ss_pred cCCCCCCCCCC---CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhh
Q 013003 90 SHPRDCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDA 166 (451)
Q Consensus 90 ~~p~daC~~~~---~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~ 166 (451)
+++.++|++.+ ++++|+|+||+||+|+|.+|++|||++||+++||||+.++...+... ....+|.+.+ +++
T Consensus 38 ~~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~-----~~~~~~~~~~-~~~ 111 (129)
T cd02124 38 SVADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGS-----DADSIIAAVT-PED 111 (129)
T ss_pred CCCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCC-----CCcceeeEEe-HHH
Confidence 35789999875 36899999999999999999999999999999999998665444321 2234566666 999
Q ss_pred HHHHHHHHhcccc
Q 013003 167 GASLEKMLLNTSS 179 (451)
Q Consensus 167 G~~L~~~L~~g~~ 179 (451)
|+.|++.+++|++
T Consensus 112 G~~l~~~l~~G~~ 124 (129)
T cd02124 112 GEAWIDALAAGSN 124 (129)
T ss_pred HHHHHHHHhcCCe
Confidence 9999999998865
No 19
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=145.58 Aligned_cols=106 Identities=25% Similarity=0.371 Sum_probs=89.0
Q ss_pred eEEecccccCCccccccCCcceEEEEecCCCCCCCCCCC------CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEe
Q 013003 63 EFVGVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPKH------KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIIN 136 (451)
Q Consensus 63 ~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~~------~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n 136 (451)
+|.+.+|.||+.++.++ ..+-++.++|.+||++..+ .-...++|++||+|+|.+|+++||++|++|+||||
T Consensus 35 sf~d~~a~f~~s~~~e~---~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVyn 111 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEG---NLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYN 111 (348)
T ss_pred cccCCccccCCcccccc---ceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEec
Confidence 78899999999998765 5668889999999999863 34568999999999999999999999999999999
Q ss_pred ccCc--ccccccCCCCCCCCcceeEEEechhhHHHHHHHHh
Q 013003 137 NQKE--LYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLL 175 (451)
Q Consensus 137 ~~~~--l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~ 175 (451)
|.+. +..|.. + ..++.|++++++...|+.|.++..
T Consensus 112 n~~~~~lv~~~~--~--~~~v~i~~~~vs~~~ge~l~~~~~ 148 (348)
T KOG4628|consen 112 NVGSEDLVAMAS--N--PSKVDIHIVFVSVFSGELLSSYAG 148 (348)
T ss_pred CCCCchheeecc--C--CccceeEEEEEeeehHHHHHHhhc
Confidence 8643 455532 2 246899999999999999998654
No 20
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.53 E-value=1.4e-14 Score=121.47 Aligned_cols=90 Identities=26% Similarity=0.407 Sum_probs=63.9
Q ss_pred ceEEEEecCC---CCCCCCC---CCCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcc
Q 013003 83 NQIHLTLSHP---RDCCSMP---KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIH 156 (451)
Q Consensus 83 ~~~~Lv~~~p---~daC~~~---~~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~ 156 (451)
.+++|+...+ ...|.+. ..+++||||||+||+|+|.+|+++||++||+|+||+|+.+....+.. .....+.+
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~--~~~~~~~~ 83 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMID--SEDPDPID 83 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTC--EBTTTSTB
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCccc--ccCCCCcE
Confidence 4677873332 2333322 25799999999999999999999999999999999993222211111 12234678
Q ss_pred eeEEEechhhHHHHHHHH
Q 013003 157 IPAVMMPQDAGASLEKML 174 (451)
Q Consensus 157 IPvv~Is~~~G~~L~~~L 174 (451)
||+++|++++|++|++++
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999999875
No 21
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.45 E-value=3.5e-13 Score=117.02 Aligned_cols=89 Identities=28% Similarity=0.422 Sum_probs=70.7
Q ss_pred cCCCCCCCCCC-----CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCc-ccccccCCCCCCCCcceeEEEec
Q 013003 90 SHPRDCCSMPK-----HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKE-LYKMVCDPDETDLDIHIPAVMMP 163 (451)
Q Consensus 90 ~~p~daC~~~~-----~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~-l~~m~~~~~~~~~~i~IPvv~Is 163 (451)
..+.++|++.. .+++|||+|++||+|+|.+|+++||++||+|+|++|+.+. ...+... ........||+++|+
T Consensus 27 ~~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~-~~~~~~~~iP~~~is 105 (126)
T cd00538 27 AGPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSV-GLESTDPSIPTVGIS 105 (126)
T ss_pred ccceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccc-cCCCCCCcEeEEEeC
Confidence 45677887763 4699999999999999999999999999999999998753 2222211 111235679999999
Q ss_pred hhhHHHHHHHHhcccc
Q 013003 164 QDAGASLEKMLLNTSS 179 (451)
Q Consensus 164 ~~~G~~L~~~L~~g~~ 179 (451)
+++|+.|+++++++.+
T Consensus 106 ~~~g~~l~~~~~~~~~ 121 (126)
T cd00538 106 YADGEALLSLLEAGKT 121 (126)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999988764
No 22
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.36 E-value=6.9e-12 Score=113.11 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=72.8
Q ss_pred cceEEEEecCCCCCCCCC--C-CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCccee
Q 013003 82 ANQIHLTLSHPRDCCSMP--K-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIP 158 (451)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~--~-~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IP 158 (451)
+...+++... .|++. . .+++|||+||+||+|+|.+|+++||++||+|+|++|+.+....+... ....||
T Consensus 25 ~~~~~lv~~g---~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~-----~~~~iP 96 (143)
T cd02133 25 GKTYELVDAG---LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLG-----EAVFIP 96 (143)
T ss_pred CcEEEEEEcc---CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCC-----CCCeEe
Confidence 3567887763 22222 2 46999999999999999999999999999999999998655444321 135699
Q ss_pred EEEechhhHHHHHHHHhccccceeeeecce
Q 013003 159 AVMMPQDAGASLEKMLLNTSSVGTILCASY 188 (451)
Q Consensus 159 vv~Is~~~G~~L~~~L~~g~~V~TV~~~s~ 188 (451)
+++|++++|+.|++++++ .+|+.+...
T Consensus 97 ~v~Is~~dG~~L~~~l~~---~~~i~~~~~ 123 (143)
T cd02133 97 VVFISKEDGEALKAALES---SKKLTFNTK 123 (143)
T ss_pred EEEecHHHHHHHHHHHhC---CCeEEEEec
Confidence 999999999999999987 344444433
No 23
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.25 E-value=5.8e-11 Score=105.29 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=70.4
Q ss_pred ceEEEEecCC---CCCCCCCCCCCcceEEEEEcCCC--CHHHHHHHHHHcCCcEEEEEeccCcccc-cccCCCCCCCCcc
Q 013003 83 NQIHLTLSHP---RDCCSMPKHKYAGDVIMVDRGNC--KFTTKANIAEAAGASALLIINNQKELYK-MVCDPDETDLDIH 156 (451)
Q Consensus 83 ~~~~Lv~~~p---~daC~~~~~~lsG~IvLV~RG~C--sF~~Ka~nAq~aGA~avIV~n~~~~l~~-m~~~~~~~~~~i~ 156 (451)
.+++++.... .|-. ..+++|||||++||.| +|.+|+++|+++||+|+|++|+.+.... +............
T Consensus 23 ~~~~lV~~g~G~~~d~~---~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~ 99 (127)
T cd04819 23 AKGEPVDAGYGLPKDFD---GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSP 99 (127)
T ss_pred eeEEEEEeCCCCHHHcC---CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCC
Confidence 4678877642 1111 2369999999999999 9999999999999999999998655322 1111111123457
Q ss_pred eeEEEechhhHHHHHHHHhcccc
Q 013003 157 IPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 157 IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
||++.|+++||+.|++++++|++
T Consensus 100 IP~v~Is~edg~~L~~~l~~g~~ 122 (127)
T cd04819 100 IPAASVSGEDGLRLARVAERNDT 122 (127)
T ss_pred CCEEEEeHHHHHHHHHHHhcCCc
Confidence 99999999999999999998775
No 24
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.21 E-value=6.9e-11 Score=103.42 Aligned_cols=82 Identities=22% Similarity=0.380 Sum_probs=68.2
Q ss_pred CCCCCCCCC---CCCcceEEEEEcCCC-CHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhH
Q 013003 92 PRDCCSMPK---HKYAGDVIMVDRGNC-KFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAG 167 (451)
Q Consensus 92 p~daC~~~~---~~lsG~IvLV~RG~C-sF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G 167 (451)
....|++.. .+++|||||++||.| +|.+|+++||++||.|+|++|+.++...+.. ....||++.|++++|
T Consensus 36 ~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~~~~~------~~~~iP~v~I~~~~g 109 (126)
T cd02120 36 DASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVA------DAHVLPAVHVDYEDG 109 (126)
T ss_pred ccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCceecc------cccccceEEECHHHH
Confidence 446898764 469999999999999 9999999999999999999998765433221 135699999999999
Q ss_pred HHHHHHHhcccc
Q 013003 168 ASLEKMLLNTSS 179 (451)
Q Consensus 168 ~~L~~~L~~g~~ 179 (451)
+.|+++++++..
T Consensus 110 ~~l~~y~~~~~~ 121 (126)
T cd02120 110 TAILSYINSTSN 121 (126)
T ss_pred HHHHHHHHcCCC
Confidence 999999997643
No 25
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.08 E-value=3.3e-10 Score=101.53 Aligned_cols=99 Identities=15% Similarity=0.127 Sum_probs=70.4
Q ss_pred CcceEEEEecCCCCCCCCC-CCCCcceEEEEEcCCC------CHHHH-------HHHHHHcCCcEEEEEeccCcccccc-
Q 013003 81 NANQIHLTLSHPRDCCSMP-KHKYAGDVIMVDRGNC------KFTTK-------ANIAEAAGASALLIINNQKELYKMV- 145 (451)
Q Consensus 81 ~~~~~~Lv~~~p~daC~~~-~~~lsG~IvLV~RG~C------sF~~K-------a~nAq~aGA~avIV~n~~~~l~~m~- 145 (451)
.+.+.+++.....+.=+.. ..+++|||||++||.| +|.+| +++|+++||.|+|++|+.+....+.
T Consensus 15 ~gvta~vv~v~~~~~~~~~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~ 94 (134)
T cd04815 15 EGITAEVVVVKSFDELKAAPAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPH 94 (134)
T ss_pred CCcEEEEEEECCHHHHHhcchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCc
Confidence 4567788766422110111 2479999999999999 99999 7999999999999999753321111
Q ss_pred -cCCCCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 146 -CDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 146 -~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
+..........||++.|+.+||+.|..++++|++
T Consensus 95 ~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~ 129 (134)
T cd04815 95 TGMMSYDDGVPKIPAAAISVEDADMLERLAARGKP 129 (134)
T ss_pred CCccccCCCCCCCCEEEechhcHHHHHHHHhCCCC
Confidence 1000112235799999999999999999998875
No 26
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=98.90 E-value=1.2e-08 Score=100.75 Aligned_cols=115 Identities=24% Similarity=0.366 Sum_probs=87.2
Q ss_pred hhhhhhhhhhhhheeccccceeecchhHHHHHHHHHH--hhccCchhHHHHHHHHHhhhhheeeeeecccccceeEEEee
Q 013003 305 TPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQ--IVHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVA 382 (451)
Q Consensus 305 ~~~~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~--~i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~~sVMv~VA 382 (451)
...++++++..+.++ .|+..|+.|+.++..+-. -+++.-+ .+.+||..+=+||-.=||.|+ .|++.|
T Consensus 96 ~~~ai~~~~~L~~yp----EWYviD~~Gil~~aG~aaiFGISl~~l-paiiLL~iLAVYDaISVYkTk------HMltLA 164 (283)
T PF06550_consen 96 LILAIALTALLYKYP----EWYVIDIAGILMGAGAAAIFGISLGIL-PAIILLAILAVYDAISVYKTK------HMLTLA 164 (283)
T ss_pred HHHHHHHHHHHHhcc----hHHHHHHHHHHHHhHHHHHHhhhccHH-HHHHHHHHHHHhhhhheecch------HHHHHH
Confidence 334444444444444 499999999999876444 3555444 488999999999999999665 799999
Q ss_pred cCCCCCCCCCCEEEEeccccCC--------------CCceeeccCcchhhHHHHHHHHHHhhcc
Q 013003 383 RGDKSGEDGIPMLLKIPRMFDP--------------WGGYSIIGFGDILLPGLIIAFSLRFKLS 432 (451)
Q Consensus 383 ~~~~~~~~~~P~~l~~P~~~~~--------------~~~~s~LGlGDIviPGl~i~~~~rfD~~ 432 (451)
.|.- +.++|+.+++|+..+- .++-.++|+||.++|.++++-...|...
T Consensus 165 egv~--d~klPilfViP~~~~ySf~~~~~~~~~~~~~r~a~fiGlGD~vmPtILVvSa~~f~~~ 226 (283)
T PF06550_consen 165 EGVM--DLKLPILFVIPKKRGYSFLKDGFDNREEKEERDAFFIGLGDAVMPTILVVSAAFFLSA 226 (283)
T ss_pred HHHh--ccCCceEEEEecccCccccccccccccccccccceEeccchhhhHHHHHHHHHHhccc
Confidence 9963 2589999999996421 1234589999999999999999988654
No 27
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.79 E-value=2.1e-08 Score=94.41 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=64.9
Q ss_pred ceEEEEecCCCCCCCCCC--------CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccc-----------
Q 013003 83 NQIHLTLSHPRDCCSMPK--------HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYK----------- 143 (451)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~--------~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~----------- 143 (451)
.+++++.++ .+...+ .+++|||+|++||+|++.+|+++||++||+|+|+|||..+...
T Consensus 29 v~g~lVyvn---~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~ 105 (183)
T cd02128 29 VTGKLVYAN---YGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHV 105 (183)
T ss_pred eEEEEEEcC---CCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecce
Confidence 467888773 222222 3789999999999999999999999999999999998422110
Q ss_pred -cccCC---------CC-------CCCCcceeEEEechhhHHHHHHHHh
Q 013003 144 -MVCDP---------DE-------TDLDIHIPAVMMPQDAGASLEKMLL 175 (451)
Q Consensus 144 -m~~~~---------~~-------~~~~i~IPvv~Is~~~G~~L~~~L~ 175 (451)
+..+| .+ ...--+||+.=|++++++.|++.+.
T Consensus 106 ~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~ 154 (183)
T cd02128 106 HLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMG 154 (183)
T ss_pred eccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcC
Confidence 00000 00 0012369999999999999999986
No 28
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.61 E-value=4.2e-08 Score=94.01 Aligned_cols=113 Identities=27% Similarity=0.494 Sum_probs=84.4
Q ss_pred hhhhhhhhhheeccccceeecchhHHHHHHHHHHh--hccCchhHHHHHHHHHhhhhheeeeeecccccceeEEEeecCC
Q 013003 308 CIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQI--VHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVARGD 385 (451)
Q Consensus 308 ~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~~--i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~~sVMv~VA~~~ 385 (451)
.++++.++..+++. .|+..|..|.+++..+-.+ +++.-+. +.+||..+=+||-.=|+. |..|++.|++-
T Consensus 97 ~~aI~~~~lL~~~p--eWyVid~ag~~la~Giaai~GIsfgv~p-avvlL~~lavYDaIsVYk------T~HMIslA~~v 167 (277)
T COG3389 97 GLAIGLVYLLYKYP--EWYVIDLAGFFLAVGIAAIFGISFGVLP-AVVLLIALAVYDAISVYK------TRHMISLAEGV 167 (277)
T ss_pred HHHHHHHHhhhhcc--ceEEeehHHHHHHhhHHHhheeecchHH-HHHHHHHHHHHHHHHHHh------HHHHHHHHHHH
Confidence 34455555555432 5999999999988765554 5555444 778999999999999994 55899999985
Q ss_pred CCCCCCCCEEEEeccccC-----------CCCceeeccCcchhhHHHHHHHHHHhhc
Q 013003 386 KSGEDGIPMLLKIPRMFD-----------PWGGYSIIGFGDILLPGLIIAFSLRFKL 431 (451)
Q Consensus 386 ~~~~~~~P~~l~~P~~~~-----------~~~~~s~LGlGDIviPGl~i~~~~rfD~ 431 (451)
- ..++||++++|...+ ..++--|+|+||+++|-+++.-+.-|-.
T Consensus 168 ~--d~~lPmlfviP~~l~ysf~~~~fe~r~dgna~miG~GDavmPsIlVvSaa~f~~ 222 (277)
T COG3389 168 M--DLDLPMLFVIPENLAYSFVEDAFENRGDGNAYMIGLGDAVMPSILVVSAAFFLI 222 (277)
T ss_pred H--hcCCceEEEeecccccceeehhhhcCCCCceEEEeechhhcccceeeehHHhcc
Confidence 3 257999999997532 1345669999999999999887766643
No 29
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.31 E-value=6e-06 Score=75.72 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=62.0
Q ss_pred ceEEEEecC---CCCCCCCCC---CCCcceEEEEEcCC------------------CCHHHHHHHHHHcCCcEEEEEecc
Q 013003 83 NQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGN------------------CKFTTKANIAEAAGASALLIINNQ 138 (451)
Q Consensus 83 ~~~~Lv~~~---p~daC~~~~---~~lsG~IvLV~RG~------------------CsF~~Ka~nAq~aGA~avIV~n~~ 138 (451)
.++++|.+. ..+.|...+ .+++||||||.||+ |++..|+++|+++||+|+|+||+.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 467888775 356786554 48999999999985 999999999999999999999986
Q ss_pred CcccccccCCCCCCCCcceeEEEechhhHHHHHHHH
Q 013003 139 KELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKML 174 (451)
Q Consensus 139 ~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L 174 (451)
++... ..+.....+.. .++.++....+.+..++
T Consensus 100 ~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (151)
T cd04822 100 NSHSG--DADRLPRFGGT-APQRVDIAAADPWFTAA 132 (151)
T ss_pred cccCc--ccccccccCcc-ceEEechHHHHHHhhhh
Confidence 54211 01011101111 17778877777776653
No 30
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.23 E-value=3.5e-06 Score=76.50 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=47.3
Q ss_pred ceEEEEecC---CCCCCCCCC---CCCcceEEEEEcCCC------------------CHHHHHHHHHHcCCcEEEEEecc
Q 013003 83 NQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGNC------------------KFTTKANIAEAAGASALLIINNQ 138 (451)
Q Consensus 83 ~~~~Lv~~~---p~daC~~~~---~~lsG~IvLV~RG~C------------------sF~~Ka~nAq~aGA~avIV~n~~ 138 (451)
...++|.+. ...+|...+ .+++|||||+.||+| ++..|+++|+++||+|+|++|+.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 456777764 345676554 489999999999999 69999999999999999999986
Q ss_pred C
Q 013003 139 K 139 (451)
Q Consensus 139 ~ 139 (451)
+
T Consensus 100 ~ 100 (142)
T cd04814 100 A 100 (142)
T ss_pred C
Confidence 4
No 31
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.21 E-value=6.1e-06 Score=80.05 Aligned_cols=91 Identities=18% Similarity=0.147 Sum_probs=65.6
Q ss_pred ceEEEEecCCCCCCCCCC--------CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc----------c--
Q 013003 83 NQIHLTLSHPRDCCSMPK--------HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL----------Y-- 142 (451)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~--------~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l----------~-- 142 (451)
.+++++.+. .|...+ .+++|||||+++|.|.+.+|+++||++||+|+|+|++..+. +
T Consensus 45 v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~~~yP~ 121 (220)
T cd02121 45 VTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENGKTYPD 121 (220)
T ss_pred ceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcccccccccccCCC
Confidence 467888774 444322 37999999999999999999999999999999999974211 0
Q ss_pred --------------c---cccCCC---------C-------CC-CCcceeEEEechhhHHHHHHHHhc
Q 013003 143 --------------K---MVCDPD---------E-------TD-LDIHIPAVMMPQDAGASLEKMLLN 176 (451)
Q Consensus 143 --------------~---m~~~~~---------~-------~~-~~i~IPvv~Is~~~G~~L~~~L~~ 176 (451)
. ...+|. + .. .--+||+.=|+..|++.|++.|..
T Consensus 122 g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g 189 (220)
T cd02121 122 GPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGG 189 (220)
T ss_pred CCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCC
Confidence 0 000000 0 00 113699999999999999999974
No 32
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.14 E-value=6.6e-06 Score=74.25 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=47.5
Q ss_pred ceEEEEecC---CCCCCCCCC---CCCcceEEEEEcCCCC------------HHHHHHHHHHcCCcEEEEEeccC
Q 013003 83 NQIHLTLSH---PRDCCSMPK---HKYAGDVIMVDRGNCK------------FTTKANIAEAAGASALLIINNQK 139 (451)
Q Consensus 83 ~~~~Lv~~~---p~daC~~~~---~~lsG~IvLV~RG~Cs------------F~~Ka~nAq~aGA~avIV~n~~~ 139 (451)
.+++++.+. +.++|...+ .+++|||||++||+|+ +.+|.++|+++||+|+|++++..
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 467787764 456776544 4899999999999995 88999999999999999999864
No 33
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.91 E-value=2.3e-05 Score=71.69 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCccc------------ccc-cCCCC--------------CCC
Q 013003 101 HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELY------------KMV-CDPDE--------------TDL 153 (451)
Q Consensus 101 ~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~------------~m~-~~~~~--------------~~~ 153 (451)
-+++|||+|++.|......|++|||++||.|+|||.|..+.. ... .+|.. ...
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~~~v~~v~~~~~GDP~TPG~PS~~~~~R~~~~~ 116 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTWHQAFMVSLNPGGDPSTPGYPSADQSCRQCRGN 116 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCccceEEEecCCCCCCCCCCCccccCcccCCcCC
Confidence 369999999999999999999999999999999999852210 000 01000 011
Q ss_pred CcceeEEEechhhHHHHHHHH
Q 013003 154 DIHIPAVMMPQDAGASLEKML 174 (451)
Q Consensus 154 ~i~IPvv~Is~~~G~~L~~~L 174 (451)
--+||+.=|+..|++.|.++-
T Consensus 117 lP~IPs~PIS~~dA~~lL~~~ 137 (153)
T cd02131 117 LTSLLVQPISAYLAKKLLSAP 137 (153)
T ss_pred CCCCcccccCHHHHHHHHhCC
Confidence 136999999999998887653
No 34
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=94.88 E-value=0.034 Score=51.50 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCCcceEEEEEcCCCCH-------------------HHHHHHHHHcCCcEEEEEecc
Q 013003 101 HKYAGDVIMVDRGNCKF-------------------TTKANIAEAAGASALLIINNQ 138 (451)
Q Consensus 101 ~~lsG~IvLV~RG~CsF-------------------~~Ka~nAq~aGA~avIV~n~~ 138 (451)
.+++||||++.+|+=.+ ..|.+.|+++||.|+|++++.
T Consensus 46 ~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 46 LDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred CCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 48999999999886533 359999999999999999874
No 35
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=71.52 E-value=4.3 Score=46.03 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=34.8
Q ss_pred CCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEecc
Q 013003 102 KYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQ 138 (451)
Q Consensus 102 ~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~ 138 (451)
+++|+|+|++-|.-...+|++||+++||.|+++|.+.
T Consensus 182 ~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~ 218 (702)
T KOG2195|consen 182 NLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP 218 (702)
T ss_pred cccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence 6889999999999999999999999999999999874
No 36
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.78 E-value=6.1 Score=41.10 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=21.2
Q ss_pred hhhhhhhhhhhheeccccceeecchhHHH
Q 013003 306 PFCIAFAVVWAIYRKVSFAWIGQDILGIA 334 (451)
Q Consensus 306 ~~~~~~~~~w~~~~~~~~~W~l~nilgi~ 334 (451)
+=+++|+++|++++-.+--|++-|++.=+
T Consensus 238 vRlILF~I~~il~~g~~g~W~FPNL~eDv 266 (372)
T KOG2927|consen 238 VRLILFGITWILTGGKHGFWLFPNLTEDV 266 (372)
T ss_pred HHHHHHHHHHHHhCCCCceEeccchhhhh
Confidence 34577889999998333369999998743
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.85 E-value=9.2 Score=39.11 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=66.5
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc----cccccCCCCCCCCcceeEEEechhhHHHHHHHHhccccceee
Q 013003 108 IMVDRGNCKFTTKANIAEAAGASALLIINNQKEL----YKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSSVGTI 183 (451)
Q Consensus 108 vLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l----~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~V~TV 183 (451)
.+++||+|+..+|.+.+|+-|-+|+|.-++.+.- -.|..++........+|.-. +.|.
T Consensus 150 ~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~frlhymvapdkvdpr~~~v~~~~------------------~lt~ 211 (374)
T COG5540 150 RCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFRLHYMVAPDKVDPRSEGVEDPV------------------TLTT 211 (374)
T ss_pred HHHHccCccccCccccchhccccceeeccccCCceEEEEEEeccCCCCchhcCCccce------------------EEEE
Confidence 3568999999999999999999999998875432 23444321111111221111 5677
Q ss_pred eecceeccchhhHHH-HHHHhhccCCCCCCccccccCCcCeeeecccceehhhHHHHHHHHHHHHH
Q 013003 184 LCASYWSAWSARETA-IEQEKLLKDAVDEIPDAKAVGVSGVVDINTASAVLFVLVASCFLVMLYKL 248 (451)
Q Consensus 184 ~~~s~WS~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~A~~Fpv~as~~Ll~Ly~f 248 (451)
.+-+||++...+.+. .++++ +.++ ..++.=+---....+...-..||.+.+--+-.+|+-
T Consensus 212 s~n~~w~~l~~~y~~Ps~~~~----a~~e-~GdmfwP~l~~fv~s~~~~~~~p~i~~~~~~~~~~t 272 (374)
T COG5540 212 SINVTWDGLGNTYQAPSQSAE----AQDE-TGDMFWPRLSRFVGSRGFRVVFPRIPSQELRFLFLT 272 (374)
T ss_pred EEeeeeccccccccCchhhhh----chhh-hcccccchheeecCceeEEEEeechhHHHHHHHHhh
Confidence 788999987654211 00000 0000 000000111223445556678899988888887763
No 38
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=37.27 E-value=1.4e+02 Score=27.38 Aligned_cols=120 Identities=13% Similarity=0.191 Sum_probs=55.4
Q ss_pred ceehhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc--CCCeeeeccccccccchhhhhhh
Q 013003 230 SAVLFVLVASCFLVMLYKLMSNWFLELLVILFCIGGVEGLQTCLVALLSRWFRRA--GESFIKVPFFGAVSHLTLAVTPF 307 (451)
Q Consensus 230 ~A~~Fpv~as~~Ll~Ly~f~~~~~~~ll~~~F~i~g~~~l~~~l~~~~~~~~~~~--~~~~~~~p~~~~~~~~~l~~~~~ 307 (451)
..-++|+.|.+.++......+..-+.....+.+.....++.-...-++++.+..+ +-++.+..+.|.++
T Consensus 33 ~gP~~piYG~g~vl~~~~~~~~~~~~~~~f~~~~i~~t~lEyi~g~~le~~~~~~~WDYS~~~~n~~G~Ic--------- 103 (157)
T PF06541_consen 33 FGPFCPIYGFGAVLLILLLRPLRRSPILLFLLGMILITALEYITGWILEKLFGARWWDYSDLPFNIQGRIC--------- 103 (157)
T ss_pred cccHHHHHhHHheeeHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCccCcCCCCcCCcCCEeh---------
Confidence 3456899888887765443321113333333333333344444444555555433 11122333334433
Q ss_pred hhhhhhhhhheeccccceeecchhHHHHHHHHHHhhccCchhHHHHHHHHHhhhhhee
Q 013003 308 CIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQIVHIPNLKVGTVLLSCAFMYDIFW 365 (451)
Q Consensus 308 ~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~~i~l~~~k~~~iLL~~lf~YDifw 365 (451)
+-.+..|...-- -.-+.+|-.+ ...++.+.-...+..++++.++++.|+..
T Consensus 104 -l~~s~~wg~l~~-~~~~~i~P~~-----~~~~~~i~~~~~~~~~~~l~~~~~~D~~~ 154 (157)
T PF06541_consen 104 -LPFSLFWGLLGL-LFVKVIHPLL-----FKLLSKIPPIIRNILALVLLALFLIDFVF 154 (157)
T ss_pred -HHHHHHHHHHHH-HHHHHHHHHH-----HHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221110 0001111111 23345555556677888899999999753
No 39
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=32.83 E-value=86 Score=33.27 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=61.9
Q ss_pred CCcceEEEEEcCCCCHHHHHH--HHHHcCCcEEEEEeccCcccccccCCCC---CCCCcceeEEEechhhHHHHHHHHhc
Q 013003 102 KYAGDVIMVDRGNCKFTTKAN--IAEAAGASALLIINNQKELYKMVCDPDE---TDLDIHIPAVMMPQDAGASLEKMLLN 176 (451)
Q Consensus 102 ~lsG~IvLV~RG~CsF~~Ka~--nAq~aGA~avIV~n~~~~l~~m~~~~~~---~~~~i~IPvv~Is~~~G~~L~~~L~~ 176 (451)
|..|++++.+|-+--...|.. .|.++||.|+|+-.+++.-..- .++.+ ......||+..++..++...+.+-..
T Consensus 87 D~~Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~-~Gd~gy~~~s~PtPIPva~v~en~~~y~~~~~rv 165 (486)
T COG4882 87 DAGGRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVT-GGDWGYSVSSSPTPIPVAVVPENYSRYAEEAGRV 165 (486)
T ss_pred CCCCeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEe-cccccccCCCCCCCcceEEeccCcchhhccceeE
Confidence 688999988886555555544 4789999999998876432110 11111 11335699999999999888743110
Q ss_pred ------cc--------------cceeeeecceeccchhhH
Q 013003 177 ------TS--------------SVGTILCASYWSAWSARE 196 (451)
Q Consensus 177 ------g~--------------~V~TV~~~s~WS~~~~~~ 196 (451)
.. .-+++.++..|..|-..+
T Consensus 166 rl~vD~~~~~ty~y~~Ia~~~~en~vv~i~AH~DHW~~G~ 205 (486)
T COG4882 166 RLWVDACVERTYDYNVIAVDGGENGVVLIGAHLDHWYTGF 205 (486)
T ss_pred EEEEecccceeEEEEEEEecCCCCCceEEeechhhhhhcc
Confidence 00 067899999999885543
Done!