Query 013003
Match_columns 451
No_of_seqs 341 out of 1495
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 20:23:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.8 1.2E-19 4.2E-24 170.2 17.1 128 52-187 38-187 (194)
2 4hyg_A Putative uncharacterize 99.7 4.5E-18 1.6E-22 165.8 3.2 116 305-433 108-238 (301)
3 3iib_A Peptidase M28; YP_92679 98.9 1.1E-08 3.8E-13 106.7 12.7 129 48-179 66-218 (444)
4 2ek8_A Aminopeptidase; metallo 98.8 2.9E-08 9.9E-13 102.6 12.8 89 82-174 92-181 (421)
5 3i6s_A Subtilisin-like proteas 98.4 5.3E-07 1.8E-11 98.5 9.9 98 83-189 257-360 (649)
6 3fed_A Glutamate carboxypeptid 98.4 4.4E-07 1.5E-11 99.9 9.2 93 82-176 126-268 (707)
7 3kas_A Transferrin receptor pr 98.3 9.7E-07 3.3E-11 96.2 7.7 92 82-175 107-230 (640)
8 1xf1_A C5A peptidase, SCP; hyd 98.0 1.6E-05 5.5E-10 90.0 11.3 82 84-172 261-343 (926)
9 1y9z_A Alkaline serine proteas 97.9 1.2E-05 4.1E-10 83.5 7.5 80 94-176 258-350 (441)
10 3vta_A Cucumisin; subtilisin-l 91.9 0.2 6.9E-06 54.0 6.6 73 94-179 268-343 (621)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=170.24 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=101.2
Q ss_pred Eeeeec--C--ccceeEEecccccCCccccccCCcceEEEEecC---CCCCCCCCCC---C-------CcceEEEEEcCC
Q 013003 52 VQTWID--G--IENEEFVGVGARFGTTIVSKEKNANQIHLTLSH---PRDCCSMPKH---K-------YAGDVIMVDRGN 114 (451)
Q Consensus 52 v~~~v~--g--~e~~~~~~~~A~FG~~lp~~~~~~~~~~Lv~~~---p~daC~~~~~---~-------lsG~IvLV~RG~ 114 (451)
+-+|.| + +...++.+.+|+||..+|.+. .++.++.+. |.+||++.+. . .+|||+||+||+
T Consensus 38 n~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~---v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~ 114 (194)
T 3icu_A 38 NVSWRVPHTGVNRTVWELSEEGVYGQDSPLEP---VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGG 114 (194)
T ss_dssp EEEEECCSSCTTCEEEEEEEEEEECTTSCCSC---EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCT
T ss_pred EEEEECCCCCccceeeecccccccCCCCCCCC---cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCC
Confidence 336664 3 445568899999999998754 567777663 7899998762 1 368999999999
Q ss_pred -CCHHHHHHHHHHcCCcEEEEEeccC---cccccccCCCCCCCCcceeEEEechhhHHHHHHHHhcccc-ceeeeecc
Q 013003 115 -CKFTTKANIAEAAGASALLIINNQK---ELYKMVCDPDETDLDIHIPAVMMPQDAGASLEKMLLNTSS-VGTILCAS 187 (451)
Q Consensus 115 -CsF~~Ka~nAq~aGA~avIV~n~~~---~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~-V~TV~~~s 187 (451)
|+|.+|++|||++||+|+||||+.+ ....|... ...+||+++|++++|+.|++++++|.+ ..|+..++
T Consensus 115 ~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-----~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 115 GCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-----GAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-----TCCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-----CCCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCC
Confidence 9999999999999999999999852 34566532 135799999999999999999999987 55555554
No 2
>4hyg_A Putative uncharacterized protein; protease, membrane protein; 3.32A {Methanoculleus marisnigri JR1} PDB: 4hyc_A 4hyd_A
Probab=99.69 E-value=4.5e-18 Score=165.82 Aligned_cols=116 Identities=28% Similarity=0.448 Sum_probs=79.8
Q ss_pred hhhhhhhhhhhhheeccccceeecchhHHHHHHHHHHh--hccCchhHHHHHHHHHhhhhheeeeeecccccceeEEEee
Q 013003 305 TPFCIAFAVVWAIYRKVSFAWIGQDILGIALIITVLQI--VHIPNLKVGTVLLSCAFMYDIFWVFVSKKLFHESVMIVVA 382 (451)
Q Consensus 305 ~~~~~~~~~~w~~~~~~~~~W~l~nilgi~~~i~~l~~--i~l~~~k~~~iLL~~lf~YDifwVF~sp~~f~~sVMv~VA 382 (451)
.+.++++++.++.+. +|+..|+.|+++|..+... +++..+ .+.+||.+|.+||.+|||.|+ +|+++|
T Consensus 108 ~~~a~~~~~ll~~yp----eWyvid~~Gi~~~aG~aalFGISl~~~-paiiLL~~LavYDaISVy~Tk------HMvtLA 176 (301)
T 4hyg_A 108 LIGAVAVTALLYLYP----EWYVIDILGVLISAGVASIFGISLEPL-PVLVLLVLLAVYDAISVYRTK------HMITLA 176 (301)
T ss_dssp HHHHHHHHHHHHTCC----CSSHHHHHHHHHHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHHHHHHH------HHHHHT
T ss_pred HHHHHHHHHHHHhcc----cHHHhhHHHHHHHhhHHHHHhhccchH-HHHHHHHHHHHHHhhhccCch------HHHHHH
Confidence 334566666666666 5999999999999998876 455888 899999999999999999665 899999
Q ss_pred cCCCCCCCCCCEEEEeccccC-------------CCCceeeccCcchhhHHHHHHHHHHhhccc
Q 013003 383 RGDKSGEDGIPMLLKIPRMFD-------------PWGGYSIIGFGDILLPGLIIAFSLRFKLSD 433 (451)
Q Consensus 383 ~~~~~~~~~~P~~l~~P~~~~-------------~~~~~s~LGlGDIviPGl~i~~~~rfD~~~ 433 (451)
+|.- ..++|+++++|+-.+ ..++..++|+||+++|+++++.+.+||...
T Consensus 177 egvm--dlk~PilfViP~~~~ys~~~~~~~~~~~~er~a~~iGlGD~viP~ilVvSa~~F~~~~ 238 (301)
T 4hyg_A 177 EGVL--ETKAPIMVVVPKRADYSFRKEGLNISEGEERGAFVMGMGDLIMPSILVVSSHVFVDAP 238 (301)
T ss_dssp TTC----------------------------------CHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred Hhhh--ccCCceEEEEecCCCccccccccccccccccceeEecCcchhHHHHHHHHHHHHcccc
Confidence 9942 257999999998421 135678999999999999999999999643
No 3
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.87 E-value=1.1e-08 Score=106.74 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=87.5
Q ss_pred EEEEEeeeecCccceeEE--------ecccccCCccccccCCcceEEEEecCCCCCCCCCC-CCCcceEEEEEcCCCC--
Q 013003 48 VLVKVQTWIDGIENEEFV--------GVGARFGTTIVSKEKNANQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCK-- 116 (451)
Q Consensus 48 ~lv~v~~~v~g~e~~~~~--------~~~A~FG~~lp~~~~~~~~~~Lv~~~p~daC~~~~-~~lsG~IvLV~RG~Cs-- 116 (451)
+-+.++.|..|.+..+.. ..+..+.+.. ...+.+++|+..+..++|+... .+++|||||++||.|.
T Consensus 66 q~f~~~~w~~~~~~~~~~~~~~~~~~~~~l~~s~~t---p~~~vta~lV~v~~~~~~~~~~~~dvkGKIVlv~~~~~~~~ 142 (444)
T 3iib_A 66 EPVTVPVWRRGIAKASILSPFPQPLVVTALGGSIAT---PAQGLSATIVRFDTLQDLQNAEAGSLNDKIAFIDAKTERHR 142 (444)
T ss_dssp EEEEEEEEEEEEEEEEEEESSCEEECEEECBTCCCC---CTTCEEEEEEEESSHHHHHTSCTTTTTTCEEEECCCCCCCT
T ss_pred eeEEeccEEecceEEEEeCCCCceEEEEeccCCCCC---CCCCeEEEEEecCCHHHHhhccccccCccEEEEeCCCCCCc
Confidence 444566787665543332 2222333222 2446789999887666675543 5899999999999996
Q ss_pred -------HHHH----HHHHHHcCCcEEEEEeccCcccccccCC--CCCCCCcceeEEEechhhHHHHHHHHhcccc
Q 013003 117 -------FTTK----ANIAEAAGASALLIINNQKELYKMVCDP--DETDLDIHIPAVMMPQDAGASLEKMLLNTSS 179 (451)
Q Consensus 117 -------F~~K----a~nAq~aGA~avIV~n~~~~l~~m~~~~--~~~~~~i~IPvv~Is~~~G~~L~~~L~~g~~ 179 (451)
|..| +.+|+++||+|+|++|+......+.... ........||++.|++++|+.|++.+++|++
T Consensus 143 ~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~ 218 (444)
T 3iib_A 143 DGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKE 218 (444)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCC
T ss_pred ccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCC
Confidence 6677 4579999999999999854322111110 0011246899999999999999999988865
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.79 E-value=2.9e-08 Score=102.60 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=66.9
Q ss_pred cceEEEEecCCCCCCCCCC-CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEE
Q 013003 82 ANQIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAV 160 (451)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~~-~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv 160 (451)
..+++++..... ..+... .+++|||||++||+|+|.+|+++|+++||+|+||+|+.+........ ......||++
T Consensus 92 ~v~a~lv~~~~G-~~~D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~---~~~~~~IP~~ 167 (421)
T 2ek8_A 92 DVTAELVYVGLG-TTADVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLG---GSDASFVAAV 167 (421)
T ss_dssp EEEEEEEECTTC-CTTTTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCS---SCCTTCCEEE
T ss_pred CcceEEEECCCC-ChhhcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccC---CCCCCCccEE
Confidence 456788766422 222222 27999999999999999999999999999999999986433211111 1134679999
Q ss_pred EechhhHHHHHHHH
Q 013003 161 MMPQDAGASLEKML 174 (451)
Q Consensus 161 ~Is~~~G~~L~~~L 174 (451)
.|+.++++.|.+.+
T Consensus 168 ~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 168 GITKQEGDALAANL 181 (421)
T ss_dssp EECHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHh
Confidence 99999999999998
No 5
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.42 E-value=5.3e-07 Score=98.50 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=78.9
Q ss_pred ceEEEEecCCCCCCCCCC---CCC--cceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcce
Q 013003 83 NQIHLTLSHPRDCCSMPK---HKY--AGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHI 157 (451)
Q Consensus 83 ~~~~Lv~~~p~daC~~~~---~~l--sG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~I 157 (451)
...|++.+...+.|.+.. ..+ +|||+|++||.|++.+|..+++++||.|+|++|+.+.. .. ....+
T Consensus 257 ~~~plv~~~~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~---~~------~~~~~ 327 (649)
T 3i6s_A 257 RDSPVIYNKTLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVF---RS------ATFPN 327 (649)
T ss_dssp EEEEEECCTTTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGGG---GC------CCCCS
T ss_pred cceeeEecccccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcccc---cc------ccCcC
Confidence 467888887788998753 334 99999999999999999999999999999999987322 11 12469
Q ss_pred eEEEechhhHHHHHHHHhcccc-ceeeeeccee
Q 013003 158 PAVMMPQDAGASLEKMLLNTSS-VGTILCASYW 189 (451)
Q Consensus 158 Pvv~Is~~~G~~L~~~L~~g~~-V~TV~~~s~W 189 (451)
|+++|+.++|+.|+++++++.. .+++......
T Consensus 328 P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~ 360 (649)
T 3i6s_A 328 PGVVVNKKEGKQVINYVKNSVTPTATITFQETY 360 (649)
T ss_dssp CEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEE
T ss_pred CEEEEcHHHHHHHHHHHhcCCCceEEEeeccee
Confidence 9999999999999999998876 5555554443
No 6
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.41 E-value=4.4e-07 Score=99.91 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=66.9
Q ss_pred cceEEEEecCCCCCCCCC--------CCCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc-------cc---
Q 013003 82 ANQIHLTLSHPRDCCSMP--------KHKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-------YK--- 143 (451)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~--------~~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l-------~~--- 143 (451)
..+++++.++ .||... ..+++|||||++||+|+|.+|+++||++||+|+||||+..+. ++
T Consensus 126 ~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~ 203 (707)
T 3fed_A 126 MPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGW 203 (707)
T ss_dssp CCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSS
T ss_pred ceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCc
Confidence 4677888874 455211 236999999999999999999999999999999999973210 00
Q ss_pred -c--------------ccCCCCC-----------------CCCcceeEEEechhhHHHHHHHHhc
Q 013003 144 -M--------------VCDPDET-----------------DLDIHIPAVMMPQDAGASLEKMLLN 176 (451)
Q Consensus 144 -m--------------~~~~~~~-----------------~~~i~IPvv~Is~~~G~~L~~~L~~ 176 (451)
+ ..++..| ....+||++-|++.+|+.|.+.+..
T Consensus 204 ~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 204 NLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp BCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0 0011000 0124799999999999999998864
No 7
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.27 E-value=9.7e-07 Score=96.23 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=65.2
Q ss_pred cceEEEEecCCCCCCCCC-C---CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcc-c-----------ccc
Q 013003 82 ANQIHLTLSHPRDCCSMP-K---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKEL-Y-----------KMV 145 (451)
Q Consensus 82 ~~~~~Lv~~~p~daC~~~-~---~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l-~-----------~m~ 145 (451)
..+++++.+. .||... . .+++|||||++||+|+|.+|+++|+++||+|+||||+..+. . .+.
T Consensus 107 ~v~g~lV~vg--~G~~~D~~~l~vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~ 184 (640)
T 3kas_A 107 TVTGKLVHAN--FGTKKDFEDLYTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLG 184 (640)
T ss_dssp EEEECEEECT--TCCHHHHHTCSSCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSS
T ss_pred ceEEEEEEec--CCChhhHHHhhcccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccC
Confidence 3567888773 344211 1 27999999999999999999999999999999999985321 0 000
Q ss_pred cCCCCC----------------CCCcceeEEEechhhHHHHHHHHh
Q 013003 146 CDPDET----------------DLDIHIPAVMMPQDAGASLEKMLL 175 (451)
Q Consensus 146 ~~~~~~----------------~~~i~IPvv~Is~~~G~~L~~~L~ 175 (451)
.++..+ .....||++.|++++++.|.+.+.
T Consensus 185 ~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 185 TGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp SSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 000000 012379999999999999998765
No 8
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=98.03 E-value=1.6e-05 Score=90.04 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=64.1
Q ss_pred eEEEEecCCCCCCCCCC-CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEe
Q 013003 84 QIHLTLSHPRDCCSMPK-HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMM 162 (451)
Q Consensus 84 ~~~Lv~~~p~daC~~~~-~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~I 162 (451)
..+++.+. ++|.+.. .+++|||+||+||.|+|.+|+.+++++||.++|++|+......+.. .....||+++|
T Consensus 261 ~~~lv~~~--~g~~~~~~~~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~-----~~~~~iP~~~i 333 (926)
T 1xf1_A 261 AYDYAYAN--RGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL-----PNVDQMPAAFI 333 (926)
T ss_dssp CEEEEECT--TSCSTTTTTTCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC-----CCSTTCCEEEE
T ss_pred eEEEEECC--CCCCccchhhcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc-----CccccccEEEE
Confidence 46776653 4686443 5799999999999999999999999999999999998644222211 12346999999
Q ss_pred chhhHHHHHH
Q 013003 163 PQDAGASLEK 172 (451)
Q Consensus 163 s~~~G~~L~~ 172 (451)
++++|+.|++
T Consensus 334 ~~~~g~~l~~ 343 (926)
T 1xf1_A 334 SRKDGLLLKD 343 (926)
T ss_dssp CHHHHHHHHH
T ss_pred eHHHHHHHHh
Confidence 9999998874
No 9
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.94 E-value=1.2e-05 Score=83.52 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=61.4
Q ss_pred CCCCCCC-----CCCcceEEEEEcCCC-----CHHHHHHHHHHcCCcEEEEEeccCcc--c-ccccCCCCCCCCcceeEE
Q 013003 94 DCCSMPK-----HKYAGDVIMVDRGNC-----KFTTKANIAEAAGASALLIINNQKEL--Y-KMVCDPDETDLDIHIPAV 160 (451)
Q Consensus 94 daC~~~~-----~~lsG~IvLV~RG~C-----sF~~Ka~nAq~aGA~avIV~n~~~~l--~-~m~~~~~~~~~~i~IPvv 160 (451)
+.|.+.+ .+++|||+|++||+| .+.+|+++++++||.++|++|+.+.. . .+..+ ......||++
T Consensus 258 ~~C~~~~~~~~~~~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~---~~~~~~~p~~ 334 (441)
T 1y9z_A 258 AECTVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVD---ANSDITVPSV 334 (441)
T ss_dssp EEEEEETTEEECCCCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEEC---TTCCCCSCEE
T ss_pred hccccccccccCCCccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccc---cccCccccEE
Confidence 4686542 479999999999987 89999999999999999999986421 0 00001 1234579999
Q ss_pred EechhhHHHHHHHHhc
Q 013003 161 MMPQDAGASLEKMLLN 176 (451)
Q Consensus 161 ~Is~~~G~~L~~~L~~ 176 (451)
+|++++|+.|++++.+
T Consensus 335 ~v~~~~g~~l~~~~~~ 350 (441)
T 1y9z_A 335 SVDRATGLALKAKLGQ 350 (441)
T ss_dssp EECHHHHHHHHTTTTS
T ss_pred EEeHHHHHHHHHHhcC
Confidence 9999999999987754
No 10
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=91.91 E-value=0.2 Score=54.05 Aligned_cols=73 Identities=12% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCCCCCC---CCCcceEEEEEcCCCCHHHHHHHHHHcCCcEEEEEeccCcccccccCCCCCCCCcceeEEEechhhHHHH
Q 013003 94 DCCSMPK---HKYAGDVIMVDRGNCKFTTKANIAEAAGASALLIINNQKELYKMVCDPDETDLDIHIPAVMMPQDAGASL 170 (451)
Q Consensus 94 daC~~~~---~~lsG~IvLV~RG~CsF~~Ka~nAq~aGA~avIV~n~~~~l~~m~~~~~~~~~~i~IPvv~Is~~~G~~L 170 (451)
..|.+.. ..++|||++++|+ +..|..+++.+||.++|++|+..+. .....+|.+.++..+|..+
T Consensus 268 ~~~~~~~~~~~~v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------~~~~~lP~~~v~~~~g~~i 334 (621)
T 3vta_A 268 RFCTDKSVNPNLLKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------ADSYPLPSSVLDPNDLLAT 334 (621)
T ss_dssp TTTCTTCSCGGGTTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------CCCCSSSEEEECHHHHHHH
T ss_pred ccccccccccccccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------ccccccceEEECHHHHHHH
Confidence 3565544 3689999998754 5688999999999999999986432 1234689999999999999
Q ss_pred HHHHhcccc
Q 013003 171 EKMLLNTSS 179 (451)
Q Consensus 171 ~~~L~~g~~ 179 (451)
++++.....
T Consensus 335 ~~~~~~~~~ 343 (621)
T 3vta_A 335 LRYIYSIRS 343 (621)
T ss_dssp HHHHHHHSS
T ss_pred HHHHhccCC
Confidence 999877654
Done!