BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013007
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust.
Identities = 258/397 (64%), Positives = 305/397 (76%), Gaps = 4/397 (1%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGI
Sbjct: 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 345
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 405
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 406 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 465
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 466 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 524 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 582 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 641
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
LI P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 642 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 678
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 526 bits (1354), Expect = e-149, Method: Compositional matrix adjust.
Identities = 257/396 (64%), Positives = 304/396 (76%), Gaps = 4/396 (1%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGI
Sbjct: 286 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 345
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 346 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 405
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 406 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 465
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 466 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 523
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 524 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 581
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 582 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 641
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
LI P+ + G RFA+REGGRTVGAGVV+KV+
Sbjct: 642 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 677
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/397 (64%), Positives = 305/397 (76%), Gaps = 4/397 (1%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 181 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 239 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 296
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 297 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 356
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
LI P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 357 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 523 bits (1347), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/397 (64%), Positives = 305/397 (76%), Gaps = 4/397 (1%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGI
Sbjct: 2 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 61
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 62 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 122 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 181
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 182 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 239
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 240 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 297
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 298 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 357
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
LI P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 358 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 394
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 523 bits (1346), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/393 (65%), Positives = 304/393 (77%), Gaps = 4/393 (1%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 118
F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGITI T
Sbjct: 5 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT 64
Query: 119 AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ 178
+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHILL RQ
Sbjct: 65 SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 124
Query: 179 VGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEE 238
VGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G E
Sbjct: 125 VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 184
Query: 239 IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298
K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKVGEEV
Sbjct: 185 EAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 242
Query: 299 EVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKT 358
E++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG++K
Sbjct: 243 EIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKP 300
Query: 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAF 418
+ KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 301 HTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVV 360
Query: 419 ELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
LI P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 361 TLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 393
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/396 (64%), Positives = 304/396 (76%), Gaps = 4/396 (1%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 180
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 181 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 238
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 239 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 296
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 297 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 356
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
LI P+ + G RFA+REGGRTVGAGVV+KV+
Sbjct: 357 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 256/392 (65%), Positives = 303/392 (77%), Gaps = 4/392 (1%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 118
F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGITI T
Sbjct: 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT 65
Query: 119 AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ 178
+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHILL RQ
Sbjct: 66 SHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ 125
Query: 179 VGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEE 238
VGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G E
Sbjct: 126 VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEW 185
Query: 239 IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298
K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKVGEEV
Sbjct: 186 EAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEV 243
Query: 299 EVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKT 358
E++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG++K
Sbjct: 244 EIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKP 301
Query: 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAF 418
+ KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 302 HTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVV 361
Query: 419 ELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
LI P+ + G RFA+REGGRTVGAGVV+KV+
Sbjct: 362 TLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 516 bits (1328), Expect = e-146, Method: Compositional matrix adjust.
Identities = 254/389 (65%), Positives = 301/389 (77%), Gaps = 4/389 (1%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
K HVNVGTIGHVDHGKTTLTAAIT VLA+ A AFD+ID APEEK RGITI T+HVE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 123 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182
Y+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHILL RQVGVP
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 183 SLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEEIGKK 242
++ FLNK S Y FPGD+ PI+RGSA AL+G E K
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAK- 179
Query: 243 AILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLG 302
IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKVGEEVE++G
Sbjct: 180 -ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVG 238
Query: 303 LTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKF 362
+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG++K + KF
Sbjct: 239 IKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKF 296
Query: 363 EAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELIS 422
E+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+ LI
Sbjct: 297 ESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIH 356
Query: 423 PLPLQQGQRFALREGGRTVGAGVVSKVIS 451
P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 357 PIAMDDGLRFAIREGGRTVGAGVVAKVLS 385
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 513 bits (1322), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/404 (64%), Positives = 306/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHK 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTKRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVGLLLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 513 bits (1320), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 306/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHK 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTKRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVGLLLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +Y+L K+EGGRHT FF+ YRPQ Y RT DVTG V L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 512 bits (1319), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FIRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 306/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHK 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTKRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVGLLLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +Y+L K+EGGRHT FF+ YRPQ Y RT DVTG V L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + +T VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 6 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITIN 65
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 66 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 125
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 126 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 185
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 186 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 243
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + +T VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 244 ERGKVKVGDEVEIVGLAP-ETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 302
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 303 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 362
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 363 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 406
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + +T VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 258/404 (63%), Positives = 307/404 (75%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI
Sbjct: 5 FIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDCPGHADY+KNMITGAAQMDG ILVVSA DGPMPQT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGVP +V F+NK + Y+FPGDE+P+IRGSA AL+
Sbjct: 125 QVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHR 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYIP P R +DKPFLMP+EDVF+I GRGTVATGR+
Sbjct: 185 NPKTRRGENEWVDK--IWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + KT VTGVEM +K L G AGDNVG+LLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAP-ETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AKPGS+ + KFEA +YVL K+EGGRHT FFS YRPQ Y RT DVTG V+L V+M
Sbjct: 302 QVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VMPGDNV ELI P+ L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 493 bits (1269), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/397 (62%), Positives = 294/397 (74%), Gaps = 18/397 (4%)
Query: 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI 114
S F RTK HVNVGTIGHVDHGKTTLTAAIT VLA+ A RGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA--------------RGI 46
Query: 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 174
TI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EHIL
Sbjct: 47 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 106
Query: 175 LARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQG 234
L RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL+G
Sbjct: 107 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEG 166
Query: 235 KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294
E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G IKV
Sbjct: 167 DAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKV 224
Query: 295 GEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354
GEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AKPG
Sbjct: 225 GEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPG 282
Query: 355 SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414
++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGDN+
Sbjct: 283 TIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNI 342
Query: 415 NAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
LI P+ + G RFA+REGGRTVGAGVV+KV+S
Sbjct: 343 KMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLS 379
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/404 (59%), Positives = 293/404 (72%), Gaps = 14/404 (3%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-FDEIDKAPEEKKRGITIA 117
F RTK HVNVGTIGHVDHGKTTLTAA+T V A E + + + +IDKA EE+ RGITI
Sbjct: 5 FIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARGITIN 64
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
TAHVEYETAKRHY+HVDC GHADY+KNMITGAAQMDG ILVVSA DG M QT+EHILLAR
Sbjct: 65 TAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLAR 124
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ---- 233
QVGV +V F+NK + Y+F GDE+ +IRGSA AL+
Sbjct: 125 QVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHK 184
Query: 234 ------GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
G+NE + K I +L+DA+DEYI R +DK FLM +EDVF+I GRGTVATGR+
Sbjct: 185 NRKTKRGENEWVDK--IWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVATGRI 242
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347
E+G +KVG+EVE++GL + + KT VTGVEM +K L G AGDNVGLLLRG+ RE+V+RG
Sbjct: 243 ERGKVKVGDEVEIVGLAR-ETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVERG 301
Query: 348 QVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKM 407
QV+AK GS+ + KFEA +Y+L K+EGGRHT FF+ YR Q Y RT DVTG V L V+M
Sbjct: 302 QVLAKRGSITRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGVEM 361
Query: 408 VMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451
VM GDNV ELI + L++G RFA+REGGRTVGAGVV+K++
Sbjct: 362 VMRGDNVTFTVELIKRVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 443 bits (1139), Expect = e-125, Method: Compositional matrix adjust.
Identities = 215/338 (63%), Positives = 260/338 (76%), Gaps = 4/338 (1%)
Query: 113 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEH 172
GITI T+HVEY+T RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 173 ILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSAL 232
ILL RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 233 QGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 292
+G E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G I
Sbjct: 121 EGDAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 293 KVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAK 352
KVGEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AK
Sbjct: 179 KVGEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 236
Query: 353 PGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGD 412
PG++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGD
Sbjct: 237 PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGD 296
Query: 413 NVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
N+ LI P+ + G RFA+REGGRTVGAGVV+KV+
Sbjct: 297 NIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/385 (55%), Positives = 283/385 (73%), Gaps = 2/385 (0%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
K HVNVGTIGHVDHGKTTLTAAITK+LAE G AK ++EID APEE+ RGITI AHVE
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 123 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182
Y TA RHYAH DCPGHADYVKNMITG A +DG ILVV+A DGPMPQT+EH+LLARQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 183 SLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEEIGKK 242
+V ++NK + + + G+E PII GSA AL+ ++ E+G K
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLK 180
Query: 243 AILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLG 302
++ KL+DAVD YIP P R L+KPFL+P+E V+SI GRGTV TG +E+G +K G+E E LG
Sbjct: 181 SVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFLG 240
Query: 303 LTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKF 362
++ +++T VTG+EMF K LDR EAGDN+G L+RGLKRED++RG V+AKPGS++ ++K
Sbjct: 241 HSK--NIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQKV 298
Query: 363 EAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELIS 422
EA++Y+LTK+EGGRH F S++ P ++ T D+ ++ L ++ MPG+++ L
Sbjct: 299 EAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLILRQ 358
Query: 423 PLPLQQGQRFALREGGRTVGAGVVS 447
P+ L++GQRF LR+G RT+G G+V+
Sbjct: 359 PMILEKGQRFTLRDGNRTIGTGLVT 383
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/338 (63%), Positives = 259/338 (76%), Gaps = 4/338 (1%)
Query: 113 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEH 172
GITI T+HVEY+T RHYAHVD PGHADYVKNMITGAAQMDG ILVV+A DGPMPQT+EH
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 173 ILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSAL 232
ILL RQVGVP ++ FLNK S Y FPGD+ PI+RGSA AL
Sbjct: 61 ILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKAL 120
Query: 233 QGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 292
+G E K IL+L +D YIP+PER +DKPFL+PIEDVFSI GRGTV TGRVE+G I
Sbjct: 121 EGDAEWEAK--ILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGII 178
Query: 293 KVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAK 352
KVGEEVE++G+ + + K+T TGVEMF+K+LD G AG+NVG+LLRG+KRE+++RGQV+AK
Sbjct: 179 KVGEEVEIVGIKE--TQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 236
Query: 353 PGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGD 412
PG++K + KFE+E+Y+L+KDEGGRHT FF YRPQ Y RT DVTG +EL V+MVMPGD
Sbjct: 237 PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGD 296
Query: 413 NVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
N+ LI P+ + G RFA+REGGRTVGAGVV+KV+
Sbjct: 297 NIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 334
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/390 (54%), Positives = 279/390 (71%), Gaps = 2/390 (0%)
Query: 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA 117
T+ R K HVNVGTIGHVDHGKTTLTAAITK+LAE G AK ++EID APEE+ RGITI
Sbjct: 7 TYVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN 66
Query: 118 TAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
AHVEY TA RHYAH DCPGHADYVKN ITG A +DG ILVV+A DGP PQT+EH+LLAR
Sbjct: 67 AAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLLAR 126
Query: 178 QVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNE 237
Q+GV +V ++NK + + + G+E PII GSA AL+ ++
Sbjct: 127 QIGVEHVVVYVNKADAVQDSEXVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDP 186
Query: 238 EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297
E+G K++ KL+DAVD YIP P R L+KPFL+P+E V+SI GRGTV TG +E+G +K G+E
Sbjct: 187 ELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE 246
Query: 298 VEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVK 357
E LG ++ +++T VTG+E F K LDR EAGDN+G L+RGLKRED++RG V AKPGS++
Sbjct: 247 CEFLGHSK--NIRTVVTGIEXFHKSLDRAEAGDNLGALVRGLKREDLRRGLVXAKPGSIQ 304
Query: 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAA 417
++K EA++Y+LTK+EGGRH F S++ P + T D ++ L ++ PG+++
Sbjct: 305 PHQKVEAQVYILTKEEGGRHKPFVSHFXPVXFSLTWDXACRIILPPGKELAXPGEDLKLT 364
Query: 418 FELISPLPLQQGQRFALREGGRTVGAGVVS 447
L P L++GQRF LR+G RT+G G+V+
Sbjct: 365 LILRQPXILEKGQRFTLRDGNRTIGTGLVT 394
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 148/440 (33%), Positives = 224/440 (50%), Gaps = 69/440 (15%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVL--------------AEEGKAKAIAFDEI-DKAP 107
K H+N+ IGHVDHGK+TL + L A+ ++ F I DK
Sbjct: 4 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 63
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE++RGITI +++ET K + +D PGH D+VKNMITGA+Q D ILVVSA G
Sbjct: 64 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 123
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPG-- 218
QT+EH+LLAR +G+ ++ +NK F K G
Sbjct: 124 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 183
Query: 219 -DEIPIIRGSATSALQGKNEEIGKKAIL------KLMDAVDEYIPDPERQLDKPFLMPIE 271
D+IP I SA +G N I + + L++A+D+ P P + +DKP +P++
Sbjct: 184 VDKIPFI---PVSAWKGDN-LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQ 238
Query: 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDN 331
+V+SI G GTV GRVE G ++VG++V + P + V +EM + L + E GDN
Sbjct: 239 NVYSIPGAGTVPVGRVETGVLRVGDKVVFM----PPGVVGEVRSIEMHYQQLQQAEPGDN 294
Query: 332 VGLLLRGLKREDVQRGQV---IAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQI 388
+G +RG+ + D++RG V + KP +V ++FEA I+V+ +A Y P I
Sbjct: 295 IGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHP-----SAITVGYTPVI 347
Query: 389 YLRTADVTGKVELL--------GDV-----KMVMPGDNVNAAFELISPLPLQ------QG 429
++ TA V+ ++ + G V + + GD F+ + PL ++ Q
Sbjct: 348 HVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQL 407
Query: 430 QRFALREGGRTVGAGVVSKV 449
RFA+R+ RTVG G+V+ V
Sbjct: 408 GRFAMRDMNRTVGIGIVTDV 427
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 148/440 (33%), Positives = 224/440 (50%), Gaps = 69/440 (15%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAITKVL--------------AEEGKAKAIAFDEI-DKAP 107
K H+N+ IGHVDHGK+TL + L A+ ++ F I DK
Sbjct: 7 KPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMK 66
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE++RGITI +++ET K + +D PGH D+VKNMITGA+Q D ILVVSA G
Sbjct: 67 EERERGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFE 126
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPG-- 218
QT+EH+LLAR +G+ ++ +NK F K G
Sbjct: 127 AGMSTEGQTREHLLLARTMGIEQIIVAVNKMDAPDVNYDQKRYEFVVSVLKKFMKGLGYQ 186
Query: 219 -DEIPIIRGSATSALQGKNEEIGKKAIL------KLMDAVDEYIPDPERQLDKPFLMPIE 271
D+IP I SA +G N I + + L++A+D+ P P + +DKP +P++
Sbjct: 187 VDKIPFI---PVSAWKGDN-LIERSPNMPWYNGPTLVEALDQLQP-PAKPVDKPLRIPVQ 241
Query: 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDN 331
+V+SI G GTV GRVE G ++VG++V + P + V +EM + L + E GDN
Sbjct: 242 NVYSIPGAGTVPVGRVETGVLRVGDKVVFM----PPGVVGEVRSIEMHYQQLQQAEPGDN 297
Query: 332 VGLLLRGLKREDVQRGQV---IAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQI 388
+G +RG+ + D++RG V + KP +V ++FEA I+V+ +A Y P I
Sbjct: 298 IGFAVRGVSKSDIKRGDVAGHLDKPPTVA--EEFEARIFVIWHP-----SAITVGYTPVI 350
Query: 389 YLRTADVTGKVELL--------GDV-----KMVMPGDNVNAAFELISPLPLQ------QG 429
++ TA V+ ++ + G V + + GD F+ + PL ++ Q
Sbjct: 351 HVHTASVSSRIIEIKAKLDPKTGQVVEQNPQFLKAGDAAIVRFKPVKPLVVEKFSEIPQL 410
Query: 430 QRFALREGGRTVGAGVVSKV 449
RFA+R+ RTVG G+V+ V
Sbjct: 411 GRFAMRDMNRTVGIGIVTDV 430
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 215/435 (49%), Gaps = 59/435 (13%)
Query: 63 KLHVNVGTIGHVDHGKTTLTAAI----------TKVLAEEGKAKAIAFDE-----IDKAP 107
K H+N+ IGHVDHGK+TL + T AEE K E +D+
Sbjct: 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK 63
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE++RG+TI + +ET K + +D PGH D+VKNMITGA+Q D ILVVSA G
Sbjct: 64 EERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYE 123
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDE 220
QT+EHI+LA+ +G+ L+ +NK F + G
Sbjct: 124 AGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFN 183
Query: 221 IPIIRGSATSALQGKNEEIGKKAILKLMD--AVDEYIPD---PERQLDKPFLMPIEDVFS 275
+R A G N K +K + ++EY+ P + +DKP +PI+DV+S
Sbjct: 184 TNKVRFVPVVAPSGDN-ITHKSENMKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQDVYS 242
Query: 276 IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKT-TVTGVEMFKKILDRGEAGDNVGL 334
I G GTV GRVE G +KVG+++ + P+ K V +E +D+ E GDN+G
Sbjct: 243 ISGVGTVPVGRVESGVLKVGDKIVFM-----PAGKVGEVRSIETHHTKMDKAEPGDNIGF 297
Query: 335 LLRGLKREDVQRGQVIAKPGSVKTY-KKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTA 393
+RG++++D++RG V+ P + T +F A I V+ TA + Y P +++ TA
Sbjct: 298 NVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPVLHVHTA 352
Query: 394 DVTGKV-ELLGDV------------KMVMPGDNVNAAFELISPLPLQQGQ------RFAL 434
V +V EL+ + + + GD F+ I PL +++ RFA+
Sbjct: 353 SVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAM 412
Query: 435 REGGRTVGAGVVSKV 449
R+ G+TVG G++ V
Sbjct: 413 RDMGKTVGVGIIVDV 427
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 200/450 (44%), Gaps = 74/450 (16%)
Query: 61 RTKLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 105
+ K H+NV IGHVD GK+T T + K AE GK +DK
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 106 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP 165
E++RGITI A ++ET K +D PGH D++KNMITG +Q D IL+++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 166 MP-------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPG 218
QT+EH LLA +GV L+ +NK +F K G
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNK--MDSVKWDESRFQEIVKETSNFIKKVG 180
Query: 219 DEIPIIRGSATSALQGKN--------------EEIGKKAILK---LMDAVDEYIPDPERQ 261
+ S G N E+ K ++K L++A+D I P R
Sbjct: 181 YNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRP 239
Query: 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPS-LKTTVTGVEMFK 320
DKP +P++DV+ I G GTV GRVE G IK G + +T P+ + T V VEM
Sbjct: 240 TDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG-----MVVTFAPAGVTTEVKSVEMHH 294
Query: 321 KILDRGEAGDNVGLLLRGLKREDVQRGQVI--AKPGSVKTYKKFEAEIYVLTKDEGGRHT 378
+ L++G GDNVG ++ + ++++RG V AK K F A + VL + G+ +
Sbjct: 295 EQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVL--NHPGQIS 352
Query: 379 AFFSNYRPQIYLRTADVTGKVELLGDV-------------KMVMPGDNVNAAFELISPLP 425
A Y P + TA + + + L + K + GD F P+
Sbjct: 353 A---GYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMC 409
Query: 426 LQQGQ------RFALREGGRTVGAGVVSKV 449
++ RFA+R+ +TV GV+ V
Sbjct: 410 VEAFSEYPPLGRFAVRDMRQTVAVGVIKSV 439
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/305 (28%), Positives = 151/305 (49%), Gaps = 25/305 (8%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124
++N+G GH+DHGKTTL+ +T++ + DK PE +KRGITI ++
Sbjct: 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAH---------DKLPESQKRGITIDIGFSAFK 69
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
VD PGHAD ++ +++ A +D ++VV A +GP QT EH+L+ +P +
Sbjct: 70 LENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-I 128
Query: 185 VCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAI 244
+ + K S + I I + +E+ I
Sbjct: 129 IVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGV----DELKNLII 184
Query: 245 LKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLT 304
L +A E I R + F MP++ F I+G GTV TG + +G +KVG+E++VL +
Sbjct: 185 TTLNNA--EII----RNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPI- 237
Query: 305 QGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVI-AKPGSVKTYKKFE 363
++ T V ++ FK+ + +AGD VG+ ++G+ + + RG ++ +K ++T K
Sbjct: 238 ---NMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKDTKLQTVDKIV 294
Query: 364 AEIYV 368
A+I +
Sbjct: 295 AKIKI 299
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/446 (27%), Positives = 192/446 (43%), Gaps = 78/446 (17%)
Query: 63 KLHVNVGTIGHVDHGKTTL---------------TAAITKVLAEEGKAKAIAFDEIDKAP 107
K HVN+ IGHVD GK+TL I + E GK +D
Sbjct: 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 100
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE+++G T+ +ET R ++ +D PGH YV NMI GA+Q D G+LV+SA G
Sbjct: 101 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 160
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPG-- 218
QT+EH +LAR G+ LV +NK F +
Sbjct: 161 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220
Query: 219 DEIPIIRGSATSALQGKN--EEIGKK--------AILKLMDAVDEYIPDPERQLDKPFLM 268
+ ++ SA G+N + + ++L+ +D++ ER+++ PF+M
Sbjct: 221 NSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHL----ERKVNAPFIM 276
Query: 269 PIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEA 328
PI + + GT+ G++E G+IK V V+ + Q +L+ T E ++I
Sbjct: 277 PIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQ--TLEVTAIYDEADEEI-SSSIC 331
Query: 329 GDNVGLLLRGLKREDVQRGQVIAKPGS-VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQ 387
GD V L +RG DVQ G V+ + V +F A+I +L + + Y
Sbjct: 332 GDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILELP-----SILTTGYSCV 385
Query: 388 IYLRTADVTGKVELLGDVKMVMPGDNVN-----------------AAFELISPLPLQQGQ 430
+++ TA VE + K++ D N A E +P+ +++ +
Sbjct: 386 MHIHTA-----VEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFE 440
Query: 431 ------RFALREGGRTVGAGVVSKVI 450
RF LR+ G TV G V K++
Sbjct: 441 DYQYMGRFTLRDQGTTVAVGKVVKIL 466
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 184/437 (42%), Gaps = 87/437 (19%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE 124
VN+G +GHVDHGKTTLT A+T V D EE +RGITI + E
Sbjct: 11 EVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITIKIGFADAE 57
Query: 125 TAK-----------------------RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA 161
+ R + +D PGH + M+ GA+ MDG ILV++A
Sbjct: 58 IRRCSNCGRYSTSPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAA 117
Query: 162 PD-GPMPQTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDE 220
+ P PQT+EH++ + +G +++ NK
Sbjct: 118 NEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIKGTVAENAPI 177
Query: 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRG 280
IPI SAL G N ++ L+ A++E+IP P+R +KP M + F + G
Sbjct: 178 IPI------SALHGANIDV-------LVKAIEEFIPTPKRDSNKPPKMLVLRSFDVNKPG 224
Query: 281 T--------VATGRVEQGTIKVGEEVEVL--------GLTQGPSLKTTVTGVEMFKKILD 324
T V G + QG +KVG+E+E+ G + + T + ++ + ++
Sbjct: 225 TPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVE 284
Query: 325 RGEAGDNVGL---LLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGGRHTAF 380
G VG+ L L + D+ G V+ KPG + + E+++L + G
Sbjct: 285 EAYPGGLVGIGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLERVVGTEQELN 344
Query: 381 FSNY-RPQIYLR---TADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFAL-R 435
R ++ L TA G V LG D + ++ P+ + G+R A+ R
Sbjct: 345 VEPIKRKEVLLLNVGTARTMGLVTALGK-------DEIELKLQI--PVCAEPGERVAISR 395
Query: 436 EGG---RTVGAGVVSKV 449
+ G R +G G++ ++
Sbjct: 396 QIGSRWRLIGYGIIKEL 412
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/443 (25%), Positives = 189/443 (42%), Gaps = 72/443 (16%)
Query: 63 KLHVNVGTIGHVDHGKTT-------LTAAITKVLAEEGKAKAIAFDE--------IDKAP 107
K HVNV IGHVD GK+T LT + K E+ + +A + +D
Sbjct: 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQ 74
Query: 108 EEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP 167
EE+ +G T+ +ET K+H+ +D PGH +V NMI GA+Q D +LV+SA G
Sbjct: 75 EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE 134
Query: 168 -------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYK----F 216
QT+EH +LA+ GV L+ +NK F K
Sbjct: 135 TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFN 194
Query: 217 PGDEIPIIRGSATSALQGKNEE------IGKKAILKLMDAVDEYIPDPERQLDKPFLMPI 270
P +I + S + K + IG L + +D +P+ R +D P +PI
Sbjct: 195 PKKDIHFMPCSGLTGANLKEQSDFCPWYIG----LPFIPYLDN-LPNFNRSVDGPIRLPI 249
Query: 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGD 330
D + + GTV G++E G+I G+++ ++ V G+ D G+
Sbjct: 250 VDKY--KDMGTVVLGKLESGSIFKGQQLVMMPNKHN----VEVLGILSDDTETDFVAPGE 303
Query: 331 NVGLLLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIY 389
N+ + L+G++ E++ G ++ P ++ + + F+ +I ++ + Y ++
Sbjct: 304 NLKIRLKGIEEEEILPGFILCDPSNLCHSGRTFDVQIVIIE-----HKSIICPGYNAVLH 358
Query: 390 LRTA----DVTGKVELL----GDVKMVMP----GDNVNAA---------FELISPLPLQQ 428
+ T ++T + L+ G+ P D V A E P Q
Sbjct: 359 IHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFP--Q 416
Query: 429 GQRFALREGGRTVGAGVVSKVIS 451
RF LR+ G+T+ G V K++
Sbjct: 417 MGRFTLRDEGKTIAIGKVLKLVQ 439
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 44/338 (13%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-------EGKAKAIAF--DEIDKAPEEKKRGIT 115
VN+G +GHVDHGKTTLT A+T V + G I F EI + P + +
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 69
Query: 116 IATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHI 173
+ +ET R + +D PGH + M+ GA+ MDG ILV++A + P PQT+EH+
Sbjct: 70 PVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL 129
Query: 174 LLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ 233
+ + +G +++ NK IPI SAL
Sbjct: 130 MALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI------SALH 183
Query: 234 GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT--------VATG 285
G N ++ L+ A++++IP P+R +KP M + F + GT V G
Sbjct: 184 GANIDV-------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDG 236
Query: 286 RVEQGTIKVGEEVEVL--------GLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGL--- 334
+ QG +KVG+E+E+ G + + T + ++ + ++ G VG+
Sbjct: 237 SIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTK 296
Query: 335 LLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTK 371
L L + D+ G V+ KPG + + E+++L +
Sbjct: 297 LDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLER 334
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 44/338 (13%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-------EGKAKAIAF--DEIDKAPEEKKRGIT 115
VN+G +GHVDHGKTTLT A+T V + G I F EI + P + +
Sbjct: 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 69
Query: 116 IATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHI 173
+ +ET R + +D PGH + M+ GA+ MDG ILV++A + P PQT+EH+
Sbjct: 70 PVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL 129
Query: 174 LLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ 233
+ + +G +++ NK IPI SAL
Sbjct: 130 MALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI------SALH 183
Query: 234 GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT--------VATG 285
G N ++ L+ A++++IP P+R +KP M + F + GT V G
Sbjct: 184 GANIDV-------LVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLGG 236
Query: 286 RVEQGTIKVGEEVEVL--------GLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGL--- 334
+ QG +KVG+E+E+ G + + T + ++ + ++ G VG+
Sbjct: 237 SIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTK 296
Query: 335 LLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTK 371
L L + D+ G V+ KPG + + E+++L +
Sbjct: 297 LDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLER 334
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 142/338 (42%), Gaps = 69/338 (20%)
Query: 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV 121
++ VN+G +GHVDHGKT+LT A+T V D+ EE +RGI+I +
Sbjct: 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWT-------------DRHSEELRRGISIRLGYA 51
Query: 122 EYETAK-----------------------RHYAHVDCPGHADYVKNMITGAAQMDGGILV 158
+ E K R + VD PGH + M++GA+ MDG ILV
Sbjct: 52 DCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILV 111
Query: 159 VSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFP 217
++A + P PQTKEH++ +G+ ++ NK
Sbjct: 112 IAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAEN 171
Query: 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ 277
IPI SA N ++ L+ A+ ++IP P+R D M + F I
Sbjct: 172 APIIPI------SAHHEANIDV-------LLKAIQDFIPTPKRDPDATPRMYVARSFDIN 218
Query: 278 GRGT--------VATGRVEQGTIKVGEEVEV---LGLTQG-----PSLKTTVTGVEMFKK 321
GT V G + QG KVG+E+E+ + +T+G L T + +
Sbjct: 219 KPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGNT 278
Query: 322 ILDRGEAGDNVGL---LLRGLKREDVQRGQVIAKPGSV 356
IL + G +G+ L L + D G V+ PG++
Sbjct: 279 ILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTL 316
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 120/280 (42%), Gaps = 63/280 (22%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 118
+ + + VN+G +GHVDHGKTTL AIT + K EE KRG+TI
Sbjct: 3 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWT-------------SKHSEELKRGMTIKL 49
Query: 119 AHVEY-----ETAKRHYAHV-----------------------DCPGHADYVKNMITGAA 150
+ E E+ K+ A+V D PGH + M++GAA
Sbjct: 50 GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAA 109
Query: 151 QMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXX 209
MDG ILVV+A + P PQT+EH + +GV +L+ NK
Sbjct: 110 LMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 169
Query: 210 XXSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMP 269
+ + +PII SAL N I L++ ++EYI P R L + +M
Sbjct: 170 TKGTW---AENVPII---PVSALHKIN-------IDSLIEGIEEYIKTPYRDLSQKPVML 216
Query: 270 IEDVFSIQGRGT--------VATGRVEQGTIKVGEEVEVL 301
+ F + GT V G + QG KV +E++VL
Sbjct: 217 VIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 256
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 120/280 (42%), Gaps = 63/280 (22%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT 118
+ + + VN+G +GHVDHGKTTL AIT + K EE KRG+TI
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWT-------------SKHSEELKRGMTIKL 48
Query: 119 AHVEY-----ETAKRHYAHV-----------------------DCPGHADYVKNMITGAA 150
+ E E+ K+ A+V D PGH + M++GAA
Sbjct: 49 GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAA 108
Query: 151 QMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXX 209
MDG ILVV+A + P PQT+EH + +GV +L+ NK
Sbjct: 109 LMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQF 168
Query: 210 XXSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMP 269
+ + +PII SAL N I L++ ++EYI P R L + +M
Sbjct: 169 TKGTW---AENVPII---PVSALHKIN-------IDSLIEGIEEYIKTPYRDLSQKPVML 215
Query: 270 IEDVFSIQGRGT--------VATGRVEQGTIKVGEEVEVL 301
+ F + GT V G + QG KV +E++VL
Sbjct: 216 VIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL 255
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 147/338 (43%), Gaps = 44/338 (13%)
Query: 65 HVNVGTIGHVDHGKTTLTAAITKVLAE-------EGKAKAIAF--DEIDKAPEEKKRGIT 115
VN+G +GHVDHGKTTLT A+T V + G I F EI + P + +
Sbjct: 10 EVNIGXVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTS 69
Query: 116 IATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHI 173
+ +ET R + +D PGH + GA+ DG ILV++A + P PQT+EH+
Sbjct: 70 PVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRPQTREHL 129
Query: 174 LLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ 233
+ +G +++ NK IPI SAL
Sbjct: 130 XALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPI------SALH 183
Query: 234 GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT--------VATG 285
G N ++ L+ A++++IP P+R +KP + F + GT V G
Sbjct: 184 GANIDV-------LVKAIEDFIPTPKRDPNKPPKXLVLRSFDVNKPGTPPEKLVGGVLGG 236
Query: 286 RVEQGTIKVGEEVEVL--------GLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGL--- 334
+ QG +KVG+E+E+ G + + T + ++ + ++ G VG+
Sbjct: 237 SIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAGGQFVEEAYPGGLVGVGTK 296
Query: 335 LLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTK 371
L L + D+ G V+ KPG + + E+++L +
Sbjct: 297 LDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLER 334
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 116/256 (45%), Gaps = 26/256 (10%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA---IAFDEIDKAPEEKKRGIT 115
+ + + VN+G +GHVDHGKTTL AIT + + A I E K PE +
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPS 61
Query: 116 IATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHI 173
+ + E R + +D PGH + M++GAA MDG ILVV+A + P PQT+EH
Sbjct: 62 CKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF 121
Query: 174 LLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQ 233
+ +GV +L+ NK + + +PII SAL
Sbjct: 122 VALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPII---PVSALH 175
Query: 234 GKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT--------VATG 285
N I L++ ++EYI P R L + +M + F + GT V G
Sbjct: 176 KIN-------IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGG 228
Query: 286 RVEQGTIKVGEEVEVL 301
+ QG KV +E++VL
Sbjct: 229 SIIQGLFKVDQEIKVL 244
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 116/262 (44%), Gaps = 32/262 (12%)
Query: 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFD---------EIDKAPEE 109
+ + + VN+G +GHVDHGKTTL AIT + + + I E K PE
Sbjct: 2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGVCESCKKPEA 61
Query: 110 KKRGITIATAHVEYETA-KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMP 167
+ + + E R + +D PGH + M++GAA MDG ILVV+A + P P
Sbjct: 62 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQP 121
Query: 168 QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGS 227
QT+EH + +GV +L+ NK + + +PII
Sbjct: 122 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW---AENVPII--- 175
Query: 228 ATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGT------ 281
SAL N I L++ ++EYI P R L + +M + F + GT
Sbjct: 176 PVSALHKIN-------IDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELK 228
Query: 282 --VATGRVEQGTIKVGEEVEVL 301
V G + QG KV +E++VL
Sbjct: 229 GGVIGGSIIQGLFKVDQEIKVL 250
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 174/425 (40%), Gaps = 52/425 (12%)
Query: 66 VNVGTIGHVDHGKTTLTAAITKVLAE---------------EGKAKAIAFDEIDKAPEEK 110
V++ GHVD GK+T+ I L E GK +D EE+
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 111 KRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP--- 167
RG+T+ A +E+ K+ Y D PGH D++ MI GA+ D +LVV +
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGF 297
Query: 168 ----QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDE--- 220
QT+EH L R +G+ +V +NK K G +
Sbjct: 298 LENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNIVSDF-LIKMVGFKTSN 356
Query: 221 ---IPIIRGSATSALQGKNEEIGKKAI-LKLMDAVDEYIPDPERQLDKPFLMPIEDVFSI 276
+PI S T+ +Q + ++ K L+ A+D+ +P PE+ KP + I+DV+
Sbjct: 357 VHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDDVYR- 414
Query: 277 QGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLL 336
R TGRVE G ++V + + + + +K + + AGD V L L
Sbjct: 415 SPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTW---AVAGDTVTLQL 471
Query: 337 RGLKREDVQRGQVIAK-PGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYL-RT-A 393
++ ++ G +++ V+ + F AEI H S ++L RT
Sbjct: 472 ADIEVNQLRPGDILSNYENPVRRVRSFVAEIQTF-----DIHGPILSGSTLVLHLGRTVT 526
Query: 394 DVTGKVELLGDVKMVMPGDNVNAAFEL-----ISPLPLQQG----QRFALREGGRTVGAG 444
V+ K+ + + + A + + PL L + RF LR G TV AG
Sbjct: 527 SVSLKIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFILRRSGDTVAAG 586
Query: 445 VVSKV 449
+V ++
Sbjct: 587 IVKEL 591
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 62/364 (17%)
Query: 56 MATFTRTKL-HVNVGTIGHVDHGKTTLTAAITKVL--------------AEEGKAKAIAF 100
++ F ++ L H++ +GHVD GK+TL + L +E + F
Sbjct: 23 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKF 82
Query: 101 DEI-DKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 159
I D+ EE++RG+T++ + T + ++ VD PGH D+V N I G +Q D IL V
Sbjct: 83 AWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCV 142
Query: 160 SAPDGPMP-------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXX----X 208
QTKEH+LLA +G+ +L+ +NK
Sbjct: 143 DCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 202
Query: 209 XXXSFYKFPGDEIPI--IRGSATSALQGKNE----EIGKKAILKLMDAVDEYIPDPE-RQ 261
F++ + +PI G ++ +E G + L +A + + E
Sbjct: 203 VDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN 262
Query: 262 LDKPFLMPIEDVFSIQGRGT---VATGRVEQGTIKVGEEVEV-------------LGLTQ 305
D PFL + ++ + + +G++E G+I+ GE + + +G Q
Sbjct: 263 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQ 322
Query: 306 GPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAE 365
G S T V + GD V L LR ED+Q G + A SV A+
Sbjct: 323 GQSTNHEETDVAI---------KGDFVTLKLRKAYPEDIQNGDLAA---SVDYSSIHSAQ 370
Query: 366 IYVL 369
+VL
Sbjct: 371 CFVL 374
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 62/364 (17%)
Query: 56 MATFTRTKL-HVNVGTIGHVDHGKTTLTAAITKVL--------------AEEGKAKAIAF 100
++ F ++ L H++ +GHVD GK+TL + L +E + F
Sbjct: 157 ISAFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKF 216
Query: 101 DEI-DKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 159
I D+ EE++RG+T++ + T + ++ VD PGH D+V N I G +Q D IL V
Sbjct: 217 AWIMDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCV 276
Query: 160 SAPDGPMP-------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXX--- 209
QTKEH+LLA +G+ +L+ +NK
Sbjct: 277 DCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYL 336
Query: 210 -XXSFYKFPGDEIPI--IRGSATSALQGKNE----EIGKKAILKLMDAVDEYIPDPER-Q 261
F++ + +PI G ++ +E G + L +A + + E
Sbjct: 337 VDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGIN 396
Query: 262 LDKPFLMPIEDVFSIQGRGT---VATGRVEQGTIKVGEEVEV-------------LGLTQ 305
D PFL + ++ + + +G++E G+I+ GE + + +G Q
Sbjct: 397 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQ 456
Query: 306 GPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAE 365
G S T V + GD V L LR ED+Q G + A SV A+
Sbjct: 457 GQSTNHEETDVAI---------KGDFVTLKLRKAYPEDIQNGDLAA---SVDYSSIHSAQ 504
Query: 366 IYVL 369
+VL
Sbjct: 505 CFVL 508
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 146/364 (40%), Gaps = 62/364 (17%)
Query: 56 MATFTRTKL-HVNVGTIGHVDHGKTTLTAAITKVL--------------AEEGKAKAIAF 100
++ F ++ L H++ +GHVD GK+TL + L +E + F
Sbjct: 23 ISAFVKSALPHLSFVVLGHVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKF 82
Query: 101 DEI-DKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVV 159
I D+ EE++RG+T++ + T + ++ VD PGH D+V N I G +Q D IL V
Sbjct: 83 AWIXDQTNEERERGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCV 142
Query: 160 SAPDGPMP-------QTKEHILLARQVGVPSLVCFLNKXXXXXXXXXXXXXXXXX----X 208
QTKEH LLA +G+ +L+ NK
Sbjct: 143 DCSTNAFESGFDLDGQTKEHXLLASSLGIHNLIIAXNKXDNVDWSQQRFEEIKSKLLPYL 202
Query: 209 XXXSFYKFPGDEIPI--IRGSATSALQGKNE----EIGKKAILKLMDAVDEYIPDPER-Q 261
F++ + +PI G ++ +E G L +A + + E
Sbjct: 203 VDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKENEGIN 262
Query: 262 LDKPFLMPIEDVFSIQGRGT---VATGRVEQGTIKVGEEVEV-------------LGLTQ 305
D PFL + ++ + + +G++E G+I+ GE + + +G Q
Sbjct: 263 KDDPFLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQ 322
Query: 306 GPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAE 365
G S T V + GD V L LR ED+Q G + A SV A+
Sbjct: 323 GQSTNHEETDVAI---------KGDFVTLKLRKAYPEDIQNGDLAA---SVDYSSIHSAQ 370
Query: 366 IYVL 369
+VL
Sbjct: 371 CFVL 374
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 5/128 (3%)
Query: 66 VNVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
+N+G + HVD GKTTLT ++ + + E G D E++RGITI T
Sbjct: 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDK-GTTRTDNTLLERQRGITIQTGITS 61
Query: 123 YETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 182
++ +D PGH D++ + + +DG IL++SA DG QT+ R++G+P
Sbjct: 62 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 121
Query: 183 SLVCFLNK 190
++ F+NK
Sbjct: 122 TIF-FINK 128
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 17/138 (12%)
Query: 70 TIGHVDHGKTTLTAAIT-----------KVLAEEGKAKAIAFDEIDKA------PEEKKR 112
T G+VD GK+TL + + + + K D++D A E+++
Sbjct: 29 TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQ 88
Query: 113 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEH 172
GITI A+ + TAKR + D PGH Y +N TGA+ D I++V A G QT+ H
Sbjct: 89 GITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDARYGVQTQTRRH 148
Query: 173 ILLARQVGVPSLVCFLNK 190
+A +G+ +V +NK
Sbjct: 149 SYIASLLGIKHIVVAINK 166
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 55/123 (44%), Gaps = 17/123 (13%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127
V +GHVDHGKTTL AI K E++ GIT +
Sbjct: 11 VTIMGHVDHGKTTLLDAIRH----------------SKVTEQEAGGITQHIGAYQVTVND 54
Query: 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCF 187
+ +D PGH + GA D ILVV+A DG MPQT E I A+ VP +V
Sbjct: 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVA- 113
Query: 188 LNK 190
+NK
Sbjct: 114 INK 116
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 56 MATFTRTKLHVNVGTIGHVDHGKTTLT------AAITKVLAEEGKAKAIAFDEIDKAPEE 109
MA T + N+G HVD GKTT T + L E A D +E
Sbjct: 4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATT----DWMVQE 59
Query: 110 KKRGITIATAHVE--YETAKRHYAH-----VDCPGHADYVKNMITGAAQMDGGILVVSAP 162
++RGITI +A V ++ ++ Y + +D PGH D+ + +DG ++V
Sbjct: 60 QERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGT 119
Query: 163 DGPMPQTKEHILLARQVGVPSLVCFLNK 190
G PQ++ A + GVP +V ++NK
Sbjct: 120 SGVEPQSETVWRQANKYGVPRIV-YVNK 146
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 124/305 (40%), Gaps = 57/305 (18%)
Query: 67 NVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 123
N I HVDHGK+TL + T ++E K + + +D E++RGIT+ V
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQL----LDTLDVERERGITVKMQAVRM 63
Query: 124 -------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 176
T K H +D PGH D+ + A +G +L++ A G QT + A
Sbjct: 64 FYKAKDGNTYKLHL--IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 177 RQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKN 236
+ + ++ +NK P ++ ++ L
Sbjct: 122 VEQDL-VIIPVINKI-----------------------DLPSADVDRVKKQIEEVLGLDP 157
Query: 237 EE---------IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
EE IG I ++++A+ IP P+ KP I D + RG VA R+
Sbjct: 158 EEAILASAKEGIG---IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRI 214
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKI-LDRGEAGDNVGLLLRGLKR-EDVQ 345
G +K G+ +++ ++ G + T G + K D+ AGD VG + +K D++
Sbjct: 215 FDGEVKPGD--KIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGD-VGYIAASIKDVRDIR 271
Query: 346 RGQVI 350
G I
Sbjct: 272 IGDTI 276
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT--IATAHVEYET 125
V +GHVDHGKT+L I G+A GIT I HVE E
Sbjct: 7 VTIMGHVDHGKTSLLEYIRSTKVASGEAG----------------GITQHIGAYHVETEN 50
Query: 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI 173
+ +D PGHA + GA D +LVV+A DG MPQT E I
Sbjct: 51 GMITF--LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI 96
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLA--EEGKAKAIAFDEIDKAPEEKKRGITIATAHV--E 122
N I H+DHGK+TL+ I ++ + + +A D +D E++RGITI V +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDL---ERERGITIKAQSVTLD 62
Query: 123 Y-----ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
Y ET + ++ +D PGH D+ + A +G +LVV A G QT + A
Sbjct: 63 YKASDGETYQLNF--IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120
Query: 178 QVGVPSLVCFLNK 190
++ + +V LNK
Sbjct: 121 EMDL-EVVPVLNK 132
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ IA +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIAEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLA--EEGKAKAIAFDEIDKAPEEKKRGITIATAHV--E 122
N I H+DHGK+TL+ I ++ + + +A D +D E++RGITI V +
Sbjct: 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDL---ERERGITIKAQSVTLD 62
Query: 123 Y-----ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR 177
Y ET + ++ +D PGH D+ + A +G +LVV A G QT + A
Sbjct: 63 YKASDGETYQLNF--IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120
Query: 178 QVGVPSLVCFLNK 190
++ + +V LNK
Sbjct: 121 EMDL-EVVPVLNK 132
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 12/145 (8%)
Query: 56 MATFTRTKLHVNVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKR 112
MA T + N+G H+D GKTT T I T V + G+ A +D +E++R
Sbjct: 1 MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAA-TMDWMEQEQER 59
Query: 113 GITI---ATAHVEYETAKRHYAH----VDCPGHADYVKNMITGAAQMDGGILVVSAPDGP 165
GITI AT AK++ H +D PGH D+ + +DG ++V A G
Sbjct: 60 GITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV 119
Query: 166 MPQTKEHILLARQVGVPSLVCFLNK 190
PQ++ A + VP + F+NK
Sbjct: 120 QPQSETVWRQANKYKVPR-IAFVNK 143
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 57/305 (18%)
Query: 67 NVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY 123
N I HVDHGK+TL + T ++E K + + +D E++RGIT+ V
Sbjct: 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQL----LDTLDVERERGITVKXQAVRX 63
Query: 124 -------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 176
T K H +D PGH D+ + A +G +L++ A G QT + A
Sbjct: 64 FYKAKDGNTYKLHL--IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 177 RQVGVPSLVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKN 236
+ + ++ +NK P ++ ++ L
Sbjct: 122 VEQDL-VIIPVINKI-----------------------DLPSADVDRVKKQIEEVLGLDP 157
Query: 237 EE---------IGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287
EE IG I ++++A+ IP P+ KP I D + RG VA R+
Sbjct: 158 EEAILASAKEGIG---IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRI 214
Query: 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKI-LDRGEAGDNVGLLLRGLKR-EDVQ 345
G +K G+++ + + G + T G + K D+ AGD VG + +K D++
Sbjct: 215 FDGEVKPGDKIXL--XSTGKEYEVTEVGAQTPKXTKFDKLSAGD-VGYIAASIKDVRDIR 271
Query: 346 RGQVI 350
G I
Sbjct: 272 IGDTI 276
>pdb|2HCJ|A Chain A, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
pdb|2HDN|A Chain A, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|C Chain C, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|E Chain E, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|G Chain G, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|I Chain I, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|K Chain K, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 37
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAE 91
TK HVNVGTIGHVDHGKTTLTAAIT VLA+
Sbjct: 1 TKPHVNVGTIGHVDHGKTTLTAAITTVLAK 30
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAI---TKVLAEEGKAKAIAFDEIDKAPEEKKRGITI---ATAH 120
N+G H+D GKTT T I T V + G+ A +D +E++RGITI AT
Sbjct: 11 NIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAA-TMDWMEQEQERGITITSAATTA 69
Query: 121 VEYETAKRHYAH----VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 176
AK++ H +D PGH D+ + +DG ++V A G PQ++ A
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 177 RQVGVPSLVCFLNK 190
+ VP + F+NK
Sbjct: 130 NKYKVPR-IAFVNK 142
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G I H+D GKTT T ++L G+ I ++D +E+ RGITI +A
Sbjct: 12 NIGIIAHIDAGKTTTTE---RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
+D PGH D+ + +DG + V+ A G PQT+ A GV
Sbjct: 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 182 PSLVCFLNK 190
P +V F+NK
Sbjct: 129 PRIV-FVNK 136
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIGIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 97/232 (41%), Gaps = 34/232 (14%)
Query: 68 VGTIGHVDHGKTTLTAAI--TKVLAEEGKAKAIAFDEIDKAPEEKKRGIT--IATAHVEY 123
V +GHVDHGKTTL + T+V A E GIT I V
Sbjct: 7 VTIMGHVDHGKTTLLDKLRKTQVAAMEAG------------------GITQHIGAFLVSL 48
Query: 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPS 183
+ ++ +D PGHA + G D ILVV+A DG M QT E I A+ VP
Sbjct: 49 PSGEK-ITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP- 106
Query: 184 LVCFLNKXXXXXXXXXXXXXXXXXXXXXSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA 243
+V +NK + GD ++ SAL G+N +A
Sbjct: 107 IVLAINKCDKAEADPEKVKKELLAYDVVC-EDYGGD----VQAVHVSALTGENMMALAEA 161
Query: 244 ILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 295
+ L + + E DP ++ + + F+ +GRG V T +++GT++ G
Sbjct: 162 TIALAEML-ELKADPTGAVEGTVI----ESFTDKGRGPVTTAIIQRGTLRKG 208
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G + H+D GKTT T ++L G+ I ++D +E+ RGITI +A
Sbjct: 12 NIGIMAHIDAGKTTTTE---RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
+D PGH D+ + +DG + V+ A G PQT+ A GV
Sbjct: 69 TAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 182 PSLVCFLNK 190
P +V F+NK
Sbjct: 129 PRIV-FVNK 136
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G I H+D GKTT T ++L G+ I ++D +E+ RGITI +A
Sbjct: 12 NIGIIAHIDAGKTTTTE---RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
+D PGH D + +DG + V+ A G PQT+ A GV
Sbjct: 69 TAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 182 PSLVCFLNK 190
P +V F+NK
Sbjct: 129 PRIV-FVNK 136
>pdb|3DWU|A Chain A, Transition-State Model Conformation Of The Switch I Region
Fitted Into The Cryo-Em Map Of The Eef2.80s.Alf4.Gdp
Complex
Length = 46
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 74 VDHGKTTLTAAITKVLAEEG-KAKAIAFDEIDKAPEEKKRGITIAT 118
VDHGKTTLTAA+T V A E + + +IDKAPEE+ RGITI T
Sbjct: 1 VDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINT 46
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 71 IGHVDHGKTTLTAAITKV-----LAEEGKA-KAIAFDEIDKAPEEKKRGITIATAHVEYE 124
I H D GKTTLT + +A KA KA D E++RGI++ T+ +++
Sbjct: 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP 96
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
R +D PGH D+ ++ +D ++V+ A G QT++ + + R P +
Sbjct: 97 YRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATP-V 155
Query: 185 VCFLNK 190
+ F+NK
Sbjct: 156 MTFVNK 161
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+G + H+D GKTT T ++L G+ I ++D +E+ RGITI +A
Sbjct: 12 NIGIMAHIDAGKTTTTE---RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAAT 68
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
+D PGH D + +DG + V+ A G PQT+ A GV
Sbjct: 69 TAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV 128
Query: 182 PSLVCFLNK 190
P +V F+NK
Sbjct: 129 PRIV-FVNK 136
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIA-----FDEIDKAPEEKKRGITIATAHV 121
N+ H+D GKTT T ++L G+ I +D +E++RGITI TA V
Sbjct: 14 NIVIAAHIDAGKTTTTE---RILYYTGRIHKIGEVHEGAATMDFMEQERERGITI-TAAV 69
Query: 122 EYETAKRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG 180
K H ++ D PGH D+ + +DG I+V + G PQ++ A +
Sbjct: 70 TTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYK 129
Query: 181 VPSLVCFLNK 190
VP + F NK
Sbjct: 130 VPR-IAFANK 138
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--- 123
N+ I HVDHGK+TLT ++ + AKA D +E++RGITI + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 124 -------ETAKRHYAH------VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK 170
E ++ + +D PGH D+ + DG ++VV +G QT+
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 16/120 (13%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--- 123
N+ I HVDHGK+TLT ++ + AKA D +E++RGITI + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSE 80
Query: 124 -------ETAKRHYAH------VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK 170
E ++ + +D PGH D+ + DG ++VV +G QT+
Sbjct: 81 MSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE 140
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 71 IGHVDHGKTTLTAAITKV-----LAEEGKAKAIAFDEIDKAPE-EKKRGITIATAHVEYE 124
I H D GKTTLT + LA K++ A E EK+RGI++ T+ ++
Sbjct: 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTSVXQFP 78
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
+D PGHAD+ ++ +D + V+ A G P+T + + R P +
Sbjct: 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLRHTP-I 137
Query: 185 VCFLNK 190
F+NK
Sbjct: 138 XTFINK 143
>pdb|3E20|A Chain A, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|D Chain D, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|E Chain E, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|J Chain J, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 201
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 92/210 (43%), Gaps = 40/210 (19%)
Query: 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILD 324
PF+MPI + + GT+ G++E G+IK V V+ + Q +L+ T E ++I
Sbjct: 7 PFIMPIASKY--KDLGTILEGKIEAGSIKKNSNVLVMPINQ--TLEVTAIYDEADEEI-S 61
Query: 325 RGEAGDNVGLLLRGLKREDVQRGQVI-AKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSN 383
GD V L +RG DVQ G V+ + V +F A+I +L + +
Sbjct: 62 SSICGDQVRLRVRG-DDSDVQTGYVLTSTKNPVHATTRFIAQIAILE-----LPSILTTG 115
Query: 384 YRPQIYLRTADVTGKVELLGDVKMVMPGDNVN-----------------AAFELISPLPL 426
Y +++ TA VE + K++ D N A E +P+ +
Sbjct: 116 YSCVMHIHTA-----VEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCM 170
Query: 427 QQGQ------RFALREGGRTVGAGVVSKVI 450
++ + RF LR+ G TV G V K++
Sbjct: 171 ERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 200
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 71 IGHVDHGKTTLTAAIT---KVLAEEGKAKAIAFDE---IDKAPEEKKRGITIATAHVEYE 124
I H D GKTT+T + + + G K ++ D EK+RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP 78
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
+D PGH D+ ++ +D ++V+ A G +T++ + + R P +
Sbjct: 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-I 137
Query: 185 VCFLNK 190
+ F+NK
Sbjct: 138 LTFMNK 143
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 71 IGHVDHGKTTLTAAIT---KVLAEEGKAKAIAFDE---IDKAPEEKKRGITIATAHVEYE 124
I H D GKTT+T + + + G K ++ D EK+RGI+I T+ +++
Sbjct: 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP 78
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
+D PGH D+ ++ +D ++V+ A G +T++ + + R P +
Sbjct: 79 YHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-I 137
Query: 185 VCFLNK 190
+ F+NK
Sbjct: 138 LTFMNK 143
>pdb|2ELF|A Chain A, Crystal Structure Of The Selb-Like Elongation Factor
Ef-Pyl From Methanosarcina Mazei
Length = 370
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 248 MDAVDEYIPDPERQLDK-PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQG 306
++ V E I +L+ P + I+ F++ G+G V G V+QG K ++ ++ L +
Sbjct: 174 INEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRD 233
Query: 307 PSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEI 366
+++ ++ +D AG VG L+ ++ +D++RG +I+ V T E +
Sbjct: 234 IEIRS----IQSHDVDIDSAPAGTRVGXRLKNVQAKDIERGFIISDKEIVTTDYTLECTV 289
Query: 367 YVLTK 371
TK
Sbjct: 290 SKFTK 294
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 68 VGTIGHVDHGKTTLTAAI--TKVLAEE--GKAKAIAFDEIDKAPEEKKRGIT--IATAHV 121
V +GHVDHGKTTL I + V + E G + I EI P + GI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI---PMDVIEGICGDFLKKFS 64
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
ET + +D PGH + G A D IL+V +G PQT+E + + R
Sbjct: 65 IRETLPGLF-FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123
Query: 182 PSLVC 186
P +V
Sbjct: 124 PFVVA 128
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 10/125 (8%)
Query: 68 VGTIGHVDHGKTTLTAAI--TKVLAEE--GKAKAIAFDEIDKAPEEKKRGIT--IATAHV 121
V +GHVDHGKTTL I + V + E G + I EI P + GI
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEI---PXDVIEGICGDFLKKFS 64
Query: 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV 181
ET + +D PGH + G A D IL+V +G PQT+E + + R
Sbjct: 65 IRETLPGLF-FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRT 123
Query: 182 PSLVC 186
P +V
Sbjct: 124 PFVVA 128
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 67 NVGTIGHVDHGKTTLTAAIT-KVLAEEGKAKAI-AFDEIDKAPEEKKRGITIATAHVEYE 124
V +GH GKTTLT A+ K A+E + + D PE K T+ T
Sbjct: 11 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL 70
Query: 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184
+D PG+ D+V + D ++ VSA G T+ +A ++G+P +
Sbjct: 71 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM 130
Query: 185 VC 186
V
Sbjct: 131 VV 132
>pdb|3E1Y|E Chain E, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|F Chain F, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|G Chain G, Crystal Structure Of Human Erf1ERF3 COMPLEX
pdb|3E1Y|H Chain H, Crystal Structure Of Human Erf1ERF3 COMPLEX
Length = 204
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 53/220 (24%)
Query: 262 LDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE---------VEVLGLTQGPSLKTT 312
L P +PI D + + GTV G++E G+I G++ VEVLG+ T
Sbjct: 3 LGSPIRLPIVDKY--KDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDT 60
Query: 313 VTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTK 371
V G+N+ + L+G++ E++ G ++ P ++ + + F+A+I ++
Sbjct: 61 VA-------------PGENLKIRLKGIEEEEILPGFILCDPNNLCHSGRTFDAQIVIIE- 106
Query: 372 DEGGRHTAFFSNYRPQIYLRTA----DVTGKVELL----GDVKMVMP----GDNVNAA-- 417
+ Y +++ T ++T + L+ G+ P D V A
Sbjct: 107 ----HKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARL 162
Query: 418 -------FELISPLPLQQGQRFALREGGRTVGAGVVSKVI 450
E P Q RF LR+ G+T+ G V K++
Sbjct: 163 RTAGTICLETFKDFP--QMGRFTLRDEGKTIAIGKVLKLV 200
>pdb|2P8W|S Chain S, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|2P8X|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Z|S Chain S, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
Length = 35
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 90 AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE 122
AE + + +IDKAPEE+ RGITI TAHVE
Sbjct: 3 AENPNVEVKDYGDIDKAPEERARGITINTAHVE 35
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 29/125 (23%)
Query: 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 126
N+G H+D GKTT T ++L G+ I + T
Sbjct: 9 NIGIAAHIDAGKTTTTE---RILYYTGR-------------------IAVTTCF-----W 41
Query: 127 KRHYAHV-DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLV 185
K H ++ D PGH D+ + +DG I+V + G PQ++ A + VP +
Sbjct: 42 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-I 100
Query: 186 CFLNK 190
F NK
Sbjct: 101 AFANK 105
>pdb|1N7N|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W292a Mutant
Length = 721
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 142 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 189
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 190 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 219
>pdb|1N7Q|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase W291aW292A
DOUBLE MUTANT Complex With Hyaluronan Hexasacchride
Length = 721
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 142 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 189
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 190 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 219
>pdb|1OJN|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
6-sulphated Chondroitin Disaccharide
Length = 731
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 144 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 191
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 192 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 221
>pdb|1EGU|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase At 1.56 A Resolution
pdb|1F9G|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase Cocrystallized With Ascorbic Acid
pdb|1C82|A Chain A, Mechanism Of Hyaluronan Binding And Degradation: Structure
Of Streptococcus Pneumoniae Hyaluronate Lyase In Complex
With Hyaluronic Acid Disaccharide At 1.7 A Resolution
pdb|1OJP|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With 6-sulphated Chondroitin
Disaccharide
pdb|1W3Y|A Chain A, Crystal Structure Of S. Pneumoniae Hyaluronate Lyase In
Complex With Palmitoyl-Vitamin C
pdb|2BRP|A Chain A, Crystal Structure Of S.Pneumoniae Hyaluronate Lyase In
Complex With W249b
pdb|2BRV|X Chain X, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 70percent Saturated Malonate.
pdb|2BRW|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme.
pdb|2BRW|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Hyaluronate
Lyase From 30percent Pegmme
Length = 731
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 144 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 191
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 192 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 221
>pdb|1OJO|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex Of The Tyr408phe Mutant With
4-sulphated Chondroitin Disaccharide
Length = 731
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 144 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 191
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 192 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 221
>pdb|1LOH|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Hexasaccharide Hyaluronan Substrate
pdb|1LXK|A Chain A, Streptococcus Pneumoniae Hyaluronate Lyase In Complex With
Tetrasaccharide Hyaluronan Substrate
Length = 721
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 142 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 189
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 190 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 219
>pdb|1OJM|A Chain A, Specificity And Mechanism Of Streptococcus Pneumoniae
Hyaluronate Lyase: Complex With Unsulphated Chondroitin
Disaccharide
Length = 729
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 237 EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296
E + I K D +++++PDPE F ++ F G V GRV KV
Sbjct: 142 EYFSDEEIKKYTDVIEKFVPDPEH-----FRKTTDNPFKALGGNLVDMGRV-----KV-- 189
Query: 297 EVEVLGLTQ--GPSLKTTVTGVEMFKKILDRGE 327
+ GL + + +T+ +E K++D+GE
Sbjct: 190 ---IAGLLRKDDQEISSTIRSIEQVFKLVDQGE 219
>pdb|1O12|A Chain A, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
pdb|1O12|B Chain B, Crystal Structure Of N-Acetylglucosamine-6-Phosphate
Deacetylase (Tm0814) From Thermotoga Maritima At 2.5 A
Resolution
Length = 376
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 334 LLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTA 393
LLLR +KR+ V++ S+ T+++F + Y EG + F N ++ R
Sbjct: 173 LLLRLVKRD-----IVLSAGHSIATFEEF-XKFY----KEGVKRITHFPNGLKPLHHREI 222
Query: 394 DVTGKVELLGDVKMVMPGDNVNAAFE 419
+TG LL DVK+ + D V+ + E
Sbjct: 223 GITGAGLLLDDVKLELICDGVHLSRE 248
>pdb|2VQD|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa Complexed With Ampcp
pdb|2C00|A Chain A, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
pdb|2C00|B Chain B, Crystal Structure Of Biotin Carboxylase From Pseudomonas
Aeruginosa In Apo Form
Length = 464
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 150 AQMDGGILVVSAPDGPMPQTKEHIL-LARQVGVPSLV 185
A G+ V DGP+P+ +E L +AR+VG P ++
Sbjct: 122 AMKRAGVPTVPGSDGPLPEDEETALAIAREVGYPVII 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,694,693
Number of Sequences: 62578
Number of extensions: 523470
Number of successful extensions: 1733
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1431
Number of HSP's gapped (non-prelim): 133
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)