Query 013007
Match_columns 451
No_of_seqs 447 out of 3453
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0460 Mitochondrial translat 100.0 2.2E-84 4.7E-89 595.5 30.2 394 56-451 45-438 (449)
2 COG0050 TufB GTPases - transla 100.0 3E-80 6.5E-85 558.3 36.9 391 57-451 4-394 (394)
3 PLN03127 Elongation factor Tu; 100.0 1.7E-77 3.7E-82 603.2 50.5 447 1-451 1-447 (447)
4 COG5256 TEF1 Translation elong 100.0 3.5E-76 7.6E-81 560.0 41.2 381 61-451 3-428 (428)
5 PRK12736 elongation factor Tu; 100.0 7.6E-74 1.6E-78 572.6 49.5 391 57-451 4-394 (394)
6 PRK12735 elongation factor Tu; 100.0 3.9E-73 8.6E-78 567.8 49.4 393 57-451 4-396 (396)
7 TIGR00485 EF-Tu translation el 100.0 4.9E-73 1.1E-77 567.7 49.8 391 57-451 4-394 (394)
8 PLN03126 Elongation factor Tu; 100.0 6.3E-73 1.4E-77 572.4 50.4 390 58-451 74-478 (478)
9 PRK00049 elongation factor Tu; 100.0 3E-72 6.5E-77 561.0 50.1 393 57-451 4-396 (396)
10 CHL00071 tufA elongation facto 100.0 2.8E-70 6E-75 549.5 48.4 391 58-450 5-408 (409)
11 PLN00043 elongation factor 1-a 100.0 2.5E-70 5.4E-75 551.9 46.8 380 61-450 3-430 (447)
12 PTZ00141 elongation factor 1- 100.0 2.1E-69 4.6E-74 545.7 46.7 380 61-450 3-430 (446)
13 PRK12317 elongation factor 1-a 100.0 5E-67 1.1E-71 530.4 45.0 380 61-450 2-421 (425)
14 TIGR00483 EF-1_alpha translati 100.0 2.1E-66 4.5E-71 525.7 46.2 380 61-450 3-423 (426)
15 TIGR02034 CysN sulfate adenyly 100.0 3.3E-61 7.2E-66 482.9 42.7 366 66-446 1-406 (406)
16 PRK05124 cysN sulfate adenylyl 100.0 3.6E-61 7.9E-66 489.3 43.5 378 59-450 21-438 (474)
17 PTZ00327 eukaryotic translatio 100.0 3.6E-61 7.8E-66 483.3 42.4 354 61-448 30-451 (460)
18 KOG0458 Elongation factor 1 al 100.0 1E-61 2.2E-66 476.2 34.8 379 63-451 175-603 (603)
19 COG5258 GTPBP1 GTPase [General 100.0 2.4E-60 5.2E-65 443.0 30.3 367 62-450 114-527 (527)
20 COG2895 CysN GTPases - Sulfate 100.0 2.6E-59 5.6E-64 433.0 33.6 371 62-449 3-415 (431)
21 PRK05506 bifunctional sulfate 100.0 2.5E-58 5.3E-63 487.0 45.8 375 61-450 20-434 (632)
22 KOG0459 Polypeptide release fa 100.0 6.3E-59 1.4E-63 436.3 27.8 377 63-451 77-501 (501)
23 TIGR03680 eif2g_arch translati 100.0 7.6E-57 1.6E-61 451.8 43.1 350 63-447 2-406 (406)
24 PRK04000 translation initiatio 100.0 8.9E-57 1.9E-61 450.7 42.6 353 60-447 4-411 (411)
25 PRK10512 selenocysteinyl-tRNA- 100.0 4.1E-57 8.8E-62 470.8 41.3 336 67-450 2-341 (614)
26 TIGR00475 selB selenocysteine- 100.0 4.7E-53 1E-57 439.5 42.5 335 66-448 1-337 (581)
27 KOG0463 GTP-binding protein GP 100.0 3.4E-55 7.4E-60 407.2 21.6 365 65-451 133-548 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 8.5E-53 1.9E-57 403.2 32.7 334 67-447 2-337 (447)
29 COG5257 GCD11 Translation init 100.0 6.6E-50 1.4E-54 365.8 32.7 351 63-448 8-413 (415)
30 KOG1143 Predicted translation 100.0 3.1E-49 6.8E-54 367.1 25.6 367 64-451 166-584 (591)
31 TIGR01394 TypA_BipA GTP-bindin 100.0 1.1E-43 2.3E-48 368.4 32.7 282 66-355 2-289 (594)
32 COG1217 TypA Predicted membran 100.0 3.9E-43 8.4E-48 335.3 24.8 286 63-356 3-294 (603)
33 PRK10218 GTP-binding protein; 100.0 6.8E-41 1.5E-45 346.9 31.3 283 64-354 4-292 (607)
34 KOG0461 Selenocysteine-specifi 100.0 1.5E-40 3.3E-45 306.5 25.6 339 65-429 7-379 (522)
35 KOG0462 Elongation factor-type 100.0 4.4E-41 9.5E-46 327.3 20.3 271 62-354 57-332 (650)
36 TIGR01393 lepA GTP-binding pro 100.0 8.4E-39 1.8E-43 332.9 32.3 267 64-354 2-277 (595)
37 PRK05433 GTP-binding protein L 100.0 9.1E-39 2E-43 332.9 31.1 268 63-354 5-281 (600)
38 COG0481 LepA Membrane GTPase L 100.0 2.8E-38 6.1E-43 303.0 20.3 268 62-353 6-282 (603)
39 KOG0466 Translation initiation 100.0 2.1E-38 4.5E-43 288.0 10.4 353 61-448 34-458 (466)
40 PRK00741 prfC peptide chain re 100.0 2E-35 4.4E-40 303.0 28.0 273 63-354 8-380 (526)
41 PRK07560 elongation factor EF- 100.0 3E-35 6.4E-40 315.2 27.2 284 62-354 17-375 (731)
42 cd01884 EF_Tu EF-Tu subfamily. 100.0 3.6E-35 7.8E-40 265.3 22.2 194 64-258 1-195 (195)
43 PRK00007 elongation factor G; 100.0 1.5E-34 3.3E-39 308.0 30.4 270 63-354 8-394 (693)
44 COG0480 FusA Translation elong 100.0 1.1E-34 2.4E-39 302.1 28.0 273 62-354 7-392 (697)
45 TIGR00503 prfC peptide chain r 100.0 2.9E-34 6.4E-39 294.5 28.8 273 63-354 9-381 (527)
46 PRK12739 elongation factor G; 100.0 3.3E-34 7.1E-39 305.7 28.2 270 63-354 6-391 (691)
47 PRK05306 infB translation init 100.0 1.5E-33 3.2E-38 298.3 28.6 247 64-352 289-542 (787)
48 TIGR00487 IF-2 translation ini 100.0 3.8E-33 8.2E-38 289.0 29.9 244 65-351 87-339 (587)
49 TIGR00484 EF-G translation elo 100.0 2.5E-33 5.4E-38 299.1 29.4 272 63-354 8-392 (689)
50 COG4108 PrfC Peptide chain rel 100.0 8.1E-34 1.8E-38 270.3 18.8 272 64-354 11-382 (528)
51 PRK13351 elongation factor G; 100.0 2.4E-32 5.2E-37 292.3 29.5 271 64-354 7-390 (687)
52 TIGR00490 aEF-2 translation el 100.0 4.8E-32 1E-36 289.7 25.5 285 61-354 15-374 (720)
53 CHL00189 infB translation init 100.0 2.4E-31 5.1E-36 279.0 27.8 247 64-351 243-499 (742)
54 PF00009 GTP_EFTU: Elongation 100.0 2.9E-32 6.4E-37 246.3 17.9 182 63-257 1-188 (188)
55 PRK12740 elongation factor G; 100.0 1.8E-31 3.9E-36 285.1 26.5 264 71-354 1-373 (668)
56 PRK04004 translation initiatio 100.0 4E-30 8.6E-35 267.2 29.5 255 65-350 6-325 (586)
57 PLN00116 translation elongatio 100.0 3.6E-30 7.8E-35 279.1 29.5 289 62-354 16-471 (843)
58 KOG0465 Mitochondrial elongati 100.0 6E-32 1.3E-36 266.2 13.6 270 63-354 37-421 (721)
59 TIGR00491 aIF-2 translation in 100.0 5.5E-30 1.2E-34 264.9 28.6 254 66-350 5-323 (590)
60 PTZ00416 elongation factor 2; 100.0 6E-30 1.3E-34 276.8 29.6 289 62-354 16-467 (836)
61 KOG1145 Mitochondrial translat 100.0 1.1E-30 2.4E-35 254.6 21.3 246 64-351 152-405 (683)
62 KOG0052 Translation elongation 100.0 3.8E-32 8.3E-37 258.2 10.8 331 60-450 2-372 (391)
63 COG0532 InfB Translation initi 100.0 4.3E-30 9.3E-35 253.4 24.0 230 66-334 6-245 (509)
64 cd01883 EF1_alpha Eukaryotic e 100.0 4.2E-29 9.2E-34 230.9 18.8 190 67-256 1-217 (219)
65 cd04166 CysN_ATPS CysN_ATPS su 100.0 2.1E-28 4.6E-33 224.5 18.6 188 67-256 1-206 (208)
66 cd01885 EF2 EF2 (for archaea a 100.0 8.3E-28 1.8E-32 220.9 17.5 190 66-258 1-222 (222)
67 cd01888 eIF2_gamma eIF2-gamma 99.9 6.8E-27 1.5E-31 213.7 18.4 169 66-260 1-203 (203)
68 PRK14845 translation initiatio 99.9 5.2E-26 1.1E-30 245.6 26.6 243 78-351 474-781 (1049)
69 cd01886 EF-G Elongation factor 99.9 4.9E-26 1.1E-30 215.7 17.5 127 67-195 1-130 (270)
70 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-25 3.4E-30 203.4 19.6 191 65-258 2-194 (194)
71 cd04165 GTPBP1_like GTPBP1-lik 99.9 9.1E-26 2E-30 208.3 17.9 176 67-257 1-223 (224)
72 cd01889 SelB_euk SelB subfamil 99.9 2E-25 4.2E-30 202.5 19.4 172 66-259 1-189 (192)
73 cd04168 TetM_like Tet(M)-like 99.9 1.5E-25 3.2E-30 208.9 18.1 180 67-258 1-237 (237)
74 KOG0469 Elongation factor 2 [T 99.9 6.8E-26 1.5E-30 218.5 13.9 289 59-350 13-470 (842)
75 KOG0464 Elongation factor G [T 99.9 4.4E-27 9.5E-32 222.1 4.8 271 64-354 36-419 (753)
76 cd04169 RF3 RF3 subfamily. Pe 99.9 5.8E-25 1.2E-29 208.3 18.4 130 65-195 2-137 (267)
77 cd04171 SelB SelB subfamily. 99.9 9.4E-24 2E-28 185.8 19.3 162 66-253 1-163 (164)
78 cd01890 LepA LepA subfamily. 99.9 8.2E-24 1.8E-28 189.4 18.6 174 66-258 1-179 (179)
79 cd04167 Snu114p Snu114p subfam 99.9 8.6E-24 1.9E-28 194.8 18.1 190 66-258 1-213 (213)
80 cd00881 GTP_translation_factor 99.9 2E-23 4.3E-28 188.2 19.0 180 67-258 1-189 (189)
81 cd04170 EF-G_bact Elongation f 99.9 3.2E-22 7E-27 190.8 18.3 127 67-195 1-130 (268)
82 KOG1144 Translation initiation 99.9 1.1E-22 2.3E-27 204.2 14.9 244 65-335 475-794 (1064)
83 KOG0467 Translation elongation 99.9 3.2E-21 6.9E-26 194.9 23.2 130 63-193 7-136 (887)
84 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.6E-20 3.5E-25 166.0 17.6 159 67-254 2-164 (168)
85 COG1159 Era GTPase [General fu 99.9 8.1E-21 1.8E-25 175.6 15.5 162 64-258 5-174 (298)
86 PF02421 FeoB_N: Ferrous iron 99.8 2.4E-21 5.2E-26 166.7 8.8 148 66-251 1-156 (156)
87 COG1160 Predicted GTPases [Gen 99.8 3.3E-20 7.2E-25 180.8 15.6 160 64-253 177-348 (444)
88 TIGR00436 era GTP-binding prot 99.8 1E-19 2.3E-24 173.6 17.9 157 67-258 2-166 (270)
89 TIGR03594 GTPase_EngA ribosome 99.8 4.4E-20 9.5E-25 188.2 16.2 161 64-254 171-342 (429)
90 COG1160 Predicted GTPases [Gen 99.8 1.1E-19 2.3E-24 177.3 17.2 153 66-256 4-165 (444)
91 KOG0468 U5 snRNP-specific prot 99.8 7.4E-19 1.6E-23 175.1 21.4 131 63-194 126-262 (971)
92 PRK00093 GTP-binding protein D 99.8 3E-19 6.5E-24 182.3 18.6 159 64-253 172-341 (435)
93 cd01894 EngA1 EngA1 subfamily. 99.8 2.5E-19 5.3E-24 156.3 15.1 148 69-254 1-156 (157)
94 cd01895 EngA2 EngA2 subfamily. 99.8 5.5E-19 1.2E-23 156.5 16.9 160 65-254 2-173 (174)
95 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.1E-19 2.5E-24 160.5 11.7 161 67-253 1-166 (167)
96 PRK15494 era GTPase Era; Provi 99.8 1E-18 2.2E-23 171.4 18.8 160 63-257 50-217 (339)
97 cd01864 Rab19 Rab19 subfamily. 99.8 2.2E-18 4.8E-23 152.1 16.3 156 65-254 3-164 (165)
98 TIGR03594 GTPase_EngA ribosome 99.8 1.9E-18 4E-23 176.3 17.7 154 67-258 1-162 (429)
99 PRK03003 GTP-binding protein D 99.8 2.1E-18 4.6E-23 177.1 17.2 161 64-255 210-381 (472)
100 PRK00089 era GTPase Era; Revie 99.8 7.1E-18 1.5E-22 163.0 19.7 160 65-257 5-172 (292)
101 cd04154 Arl2 Arl2 subfamily. 99.8 2.2E-18 4.8E-23 153.4 14.1 156 63-253 12-172 (173)
102 PF03143 GTP_EFTU_D3: Elongati 99.8 1.9E-18 4.2E-23 138.3 11.6 90 356-450 2-99 (99)
103 cd04124 RabL2 RabL2 subfamily. 99.8 5.3E-18 1.2E-22 149.2 15.0 154 66-255 1-157 (161)
104 cd01898 Obg Obg subfamily. Th 99.8 3.2E-18 6.9E-23 151.6 13.5 153 67-254 2-169 (170)
105 cd03693 EF1_alpha_II EF1_alpha 99.8 3.1E-18 6.7E-23 135.0 11.7 89 263-355 2-90 (91)
106 TIGR03598 GTPase_YsxC ribosome 99.8 1E-17 2.2E-22 150.1 16.2 148 62-231 15-175 (179)
107 cd04114 Rab30 Rab30 subfamily. 99.8 5.3E-18 1.1E-22 150.1 14.2 157 63-254 5-167 (169)
108 PRK15467 ethanolamine utilizat 99.8 5.6E-18 1.2E-22 148.4 14.0 141 67-256 3-147 (158)
109 cd01860 Rab5_related Rab5-rela 99.8 6.9E-18 1.5E-22 148.4 14.3 158 66-256 2-163 (163)
110 cd04145 M_R_Ras_like M-Ras/R-R 99.8 6E-18 1.3E-22 148.8 13.8 157 65-255 2-163 (164)
111 cd01897 NOG NOG1 is a nucleola 99.8 1.1E-17 2.4E-22 147.9 15.5 153 66-255 1-167 (168)
112 cd04157 Arl6 Arl6 subfamily. 99.8 5.7E-18 1.2E-22 148.7 13.6 154 67-253 1-161 (162)
113 PRK03003 GTP-binding protein D 99.8 1.5E-17 3.2E-22 170.8 18.3 156 64-257 37-200 (472)
114 cd04106 Rab23_lke Rab23-like s 99.8 1.1E-17 2.4E-22 147.0 14.3 153 66-253 1-160 (162)
115 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.1E-17 2.3E-22 145.9 14.1 147 66-255 2-156 (157)
116 cd01879 FeoB Ferrous iron tran 99.8 5E-18 1.1E-22 148.4 12.0 147 70-254 1-155 (158)
117 cd04113 Rab4 Rab4 subfamily. 99.8 7.9E-18 1.7E-22 147.8 13.2 156 66-254 1-160 (161)
118 cd03706 mtEFTU_III Domain III 99.8 1.2E-17 2.7E-22 132.4 12.6 91 359-449 3-93 (93)
119 cd01862 Rab7 Rab7 subfamily. 99.8 1.5E-17 3.2E-22 147.6 14.1 158 66-255 1-166 (172)
120 cd01865 Rab3 Rab3 subfamily. 99.8 1.6E-17 3.5E-22 146.6 14.1 158 66-256 2-163 (165)
121 cd04163 Era Era subfamily. Er 99.8 5.3E-17 1.2E-21 142.5 17.2 157 65-254 3-167 (168)
122 cd04151 Arl1 Arl1 subfamily. 99.7 1.2E-17 2.6E-22 146.4 12.8 152 67-253 1-157 (158)
123 PRK09518 bifunctional cytidyla 99.7 1.7E-17 3.6E-22 178.2 16.6 161 65-256 450-621 (712)
124 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.9E-17 4E-22 151.2 14.3 157 66-256 1-168 (201)
125 cd01861 Rab6 Rab6 subfamily. 99.7 3.6E-17 7.8E-22 143.5 15.5 154 66-254 1-160 (161)
126 PRK00093 GTP-binding protein D 99.7 3.6E-17 7.8E-22 167.1 17.8 153 66-256 2-162 (435)
127 cd03694 GTPBP_II Domain II of 99.7 1.3E-17 2.7E-22 130.3 10.9 87 266-352 1-87 (87)
128 cd01866 Rab2 Rab2 subfamily. 99.7 2.3E-17 5E-22 146.1 14.1 158 65-255 4-165 (168)
129 smart00175 RAB Rab subfamily o 99.7 2.1E-17 4.5E-22 145.4 13.5 156 66-256 1-162 (164)
130 PRK04213 GTP-binding protein; 99.7 7.9E-17 1.7E-21 147.0 17.8 158 64-259 8-195 (201)
131 cd01867 Rab8_Rab10_Rab13_like 99.7 2.8E-17 6.1E-22 145.4 14.3 158 65-255 3-164 (167)
132 TIGR00231 small_GTP small GTP- 99.7 1.5E-17 3.2E-22 144.4 12.1 150 66-252 2-160 (161)
133 cd04119 RJL RJL (RabJ-Like) su 99.7 3.3E-17 7.2E-22 144.5 14.3 154 66-254 1-165 (168)
134 PRK00454 engB GTP-binding prot 99.7 1.4E-16 3E-21 144.7 18.7 160 63-256 22-194 (196)
135 cd04149 Arf6 Arf6 subfamily. 99.7 2.4E-17 5.3E-22 146.0 13.4 155 64-253 8-167 (168)
136 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.4E-17 5.2E-22 144.5 13.2 154 66-254 2-160 (162)
137 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.3E-17 7.1E-22 144.7 14.0 156 65-255 2-163 (166)
138 cd04116 Rab9 Rab9 subfamily. 99.7 5.6E-17 1.2E-21 143.8 15.5 156 64-254 4-169 (170)
139 cd03698 eRF3_II_like eRF3_II_l 99.7 2.8E-17 6.2E-22 127.3 11.8 83 265-352 1-83 (83)
140 cd00154 Rab Rab family. Rab G 99.7 4.5E-17 9.8E-22 141.7 14.6 154 66-252 1-158 (159)
141 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.4E-17 5.2E-22 144.3 12.4 152 67-253 1-157 (158)
142 smart00173 RAS Ras subfamily o 99.7 2E-17 4.3E-22 145.7 11.9 157 66-256 1-162 (164)
143 cd04112 Rab26 Rab26 subfamily. 99.7 3.2E-17 6.9E-22 148.4 13.5 159 66-256 1-163 (191)
144 TIGR02528 EutP ethanolamine ut 99.7 3E-17 6.5E-22 141.1 12.7 136 67-252 2-141 (142)
145 KOG1423 Ras-like GTPase ERA [C 99.7 1.2E-16 2.6E-21 147.0 17.2 172 60-257 67-272 (379)
146 COG0218 Predicted GTPase [Gene 99.7 1.4E-16 3E-21 140.0 16.7 161 64-256 23-197 (200)
147 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 4E-17 8.7E-22 146.7 13.8 161 65-256 3-170 (183)
148 cd01863 Rab18 Rab18 subfamily. 99.7 3.9E-17 8.4E-22 143.3 13.2 155 66-254 1-160 (161)
149 cd04150 Arf1_5_like Arf1-Arf5- 99.7 6.7E-17 1.5E-21 141.9 14.6 153 66-253 1-158 (159)
150 cd04122 Rab14 Rab14 subfamily. 99.7 4.4E-17 9.5E-22 144.0 13.5 157 65-254 2-162 (166)
151 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 2.5E-16 5.3E-21 135.8 17.5 164 63-258 20-187 (221)
152 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5E-17 1.1E-21 144.9 13.9 155 64-253 14-173 (174)
153 cd01882 BMS1 Bms1. Bms1 is an 99.7 5.5E-16 1.2E-20 143.7 21.3 185 62-276 36-221 (225)
154 cd04127 Rab27A Rab27a subfamil 99.7 9.2E-17 2E-21 143.8 15.6 158 64-254 3-175 (180)
155 cd01878 HflX HflX subfamily. 99.7 5.6E-17 1.2E-21 148.4 14.5 153 62-254 38-203 (204)
156 cd01893 Miro1 Miro1 subfamily. 99.7 8.7E-17 1.9E-21 142.1 15.1 159 66-255 1-163 (166)
157 COG2229 Predicted GTPase [Gene 99.7 3.7E-16 7.9E-21 134.2 18.2 165 63-254 8-176 (187)
158 cd04136 Rap_like Rap-like subf 99.7 5.9E-17 1.3E-21 142.4 13.6 155 66-254 2-161 (163)
159 cd01868 Rab11_like Rab11-like. 99.7 6.7E-17 1.5E-21 142.5 13.9 156 65-255 3-164 (165)
160 PRK09554 feoB ferrous iron tra 99.7 5.1E-17 1.1E-21 173.8 15.4 154 65-256 3-168 (772)
161 cd04120 Rab12 Rab12 subfamily. 99.7 1.3E-16 2.7E-21 145.3 15.8 155 67-255 2-162 (202)
162 cd00879 Sar1 Sar1 subfamily. 99.7 5.5E-17 1.2E-21 146.6 13.2 157 63-254 17-189 (190)
163 PLN00223 ADP-ribosylation fact 99.7 1E-16 2.3E-21 143.7 14.7 158 63-255 15-177 (181)
164 cd00157 Rho Rho (Ras homology) 99.7 5.6E-17 1.2E-21 143.7 12.6 158 66-253 1-170 (171)
165 PRK05291 trmE tRNA modificatio 99.7 4.5E-17 9.6E-22 165.6 13.4 149 64-256 214-370 (449)
166 cd03707 EFTU_III Domain III of 99.7 7E-17 1.5E-21 127.3 11.6 88 359-446 3-90 (90)
167 smart00177 ARF ARF-like small 99.7 1.3E-16 2.8E-21 142.3 14.6 157 64-255 12-173 (175)
168 cd04140 ARHI_like ARHI subfami 99.7 1.1E-16 2.4E-21 141.3 14.0 155 66-254 2-163 (165)
169 cd04158 ARD1 ARD1 subfamily. 99.7 7.1E-17 1.5E-21 143.2 12.7 155 67-256 1-161 (169)
170 KOG0092 GTPase Rab5/YPT51 and 99.7 5.4E-17 1.2E-21 139.9 11.4 163 63-259 3-170 (200)
171 PRK09518 bifunctional cytidyla 99.7 2.4E-16 5.2E-21 169.3 19.2 155 65-257 275-437 (712)
172 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.2E-16 2.5E-21 141.9 13.9 157 67-255 2-164 (170)
173 cd03697 EFTU_II EFTU_II: Elong 99.7 4.9E-17 1.1E-21 127.1 10.1 87 266-354 1-87 (87)
174 PRK12298 obgE GTPase CgtA; Rev 99.7 1.9E-16 4.2E-21 157.3 16.9 158 66-257 160-334 (390)
175 PF10662 PduV-EutP: Ethanolami 99.7 8.2E-17 1.8E-21 135.4 12.0 137 66-252 2-142 (143)
176 PLN03118 Rab family protein; P 99.7 1.4E-16 2.9E-21 146.7 14.6 159 64-256 13-177 (211)
177 cd04135 Tc10 TC10 subfamily. 99.7 1.2E-16 2.5E-21 142.3 13.7 159 66-254 1-172 (174)
178 cd04110 Rab35 Rab35 subfamily. 99.7 1.3E-16 2.7E-21 145.5 14.1 158 64-256 5-167 (199)
179 TIGR03156 GTP_HflX GTP-binding 99.7 1.5E-16 3.3E-21 156.3 15.5 149 64-254 188-350 (351)
180 cd00880 Era_like Era (E. coli 99.7 2.1E-16 4.6E-21 137.2 14.8 154 70-254 1-162 (163)
181 cd04155 Arl3 Arl3 subfamily. 99.7 1E-16 2.2E-21 142.5 12.9 157 62-253 11-172 (173)
182 cd01874 Cdc42 Cdc42 subfamily. 99.7 2.3E-16 5.1E-21 140.7 15.3 157 66-253 2-172 (175)
183 PTZ00369 Ras-like protein; Pro 99.7 6.5E-17 1.4E-21 146.1 11.8 159 64-256 4-167 (189)
184 PRK12299 obgE GTPase CgtA; Rev 99.7 2.9E-16 6.3E-21 153.1 17.1 157 65-256 158-328 (335)
185 cd00877 Ran Ran (Ras-related n 99.7 9.2E-17 2E-21 142.0 12.4 154 66-256 1-159 (166)
186 cd04115 Rab33B_Rab33A Rab33B/R 99.7 3.4E-16 7.4E-21 138.9 16.0 159 65-255 2-168 (170)
187 cd04175 Rap1 Rap1 subgroup. T 99.7 1.4E-16 3E-21 140.4 13.1 156 66-255 2-162 (164)
188 cd04177 RSR1 RSR1 subgroup. R 99.7 1.3E-16 2.8E-21 141.3 12.6 157 66-255 2-163 (168)
189 cd04118 Rab24 Rab24 subfamily. 99.7 1.4E-16 3.1E-21 144.3 13.1 161 66-255 1-165 (193)
190 cd04156 ARLTS1 ARLTS1 subfamil 99.7 2.2E-16 4.9E-21 138.3 13.9 153 67-253 1-159 (160)
191 cd01871 Rac1_like Rac1-like su 99.7 4.1E-16 8.8E-21 139.0 15.7 158 65-253 1-172 (174)
192 TIGR02729 Obg_CgtA Obg family 99.7 3.3E-16 7.1E-21 152.6 16.3 155 65-255 157-328 (329)
193 cd04159 Arl10_like Arl10-like 99.7 1.8E-16 3.8E-21 138.1 13.0 152 68-253 2-158 (159)
194 cd03704 eRF3c_III This family 99.7 1.7E-16 3.8E-21 129.5 12.0 88 358-449 2-108 (108)
195 cd04144 Ras2 Ras2 subfamily. 99.7 1.5E-16 3.2E-21 144.0 12.8 156 67-256 1-163 (190)
196 cd04089 eRF3_II eRF3_II: domai 99.7 2E-16 4.4E-21 122.1 11.7 82 265-352 1-82 (82)
197 cd04109 Rab28 Rab28 subfamily. 99.7 3.4E-16 7.4E-21 144.4 15.3 157 66-256 1-166 (215)
198 smart00178 SAR Sar1p-like memb 99.7 3.1E-16 6.8E-21 141.0 14.7 157 63-254 15-183 (184)
199 cd04123 Rab21 Rab21 subfamily. 99.7 2.8E-16 6E-21 137.7 13.9 154 66-254 1-160 (162)
200 cd04121 Rab40 Rab40 subfamily. 99.7 4.7E-16 1E-20 140.1 15.6 157 64-255 5-166 (189)
201 cd04139 RalA_RalB RalA/RalB su 99.7 1.8E-16 3.8E-21 139.3 12.6 156 66-255 1-161 (164)
202 cd04147 Ras_dva Ras-dva subfam 99.7 2E-16 4.3E-21 144.1 13.3 156 67-256 1-163 (198)
203 cd04176 Rap2 Rap2 subgroup. T 99.7 2.1E-16 4.5E-21 139.1 13.0 156 66-255 2-162 (163)
204 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.4E-16 5.3E-21 140.1 13.5 153 66-255 3-163 (172)
205 smart00174 RHO Rho (Ras homolo 99.7 2.7E-16 5.9E-21 139.9 13.7 157 68-255 1-171 (174)
206 cd04134 Rho3 Rho3 subfamily. 99.7 3.5E-16 7.5E-21 141.4 14.4 161 66-257 1-175 (189)
207 cd04128 Spg1 Spg1p. Spg1p (se 99.7 4.5E-16 9.8E-21 139.7 15.0 159 66-255 1-165 (182)
208 cd04132 Rho4_like Rho4-like su 99.7 2.6E-16 5.7E-21 141.8 13.6 160 66-256 1-167 (187)
209 PTZ00133 ADP-ribosylation fact 99.7 3.6E-16 7.7E-21 140.4 14.2 157 64-255 16-177 (182)
210 COG0486 ThdF Predicted GTPase 99.7 3.5E-16 7.5E-21 153.3 14.7 154 64-257 216-377 (454)
211 cd01892 Miro2 Miro2 subfamily. 99.7 3.2E-16 6.8E-21 139.0 13.3 162 63-256 2-166 (169)
212 PLN03110 Rab GTPase; Provision 99.7 3.7E-16 8.1E-21 144.2 14.2 158 64-256 11-174 (216)
213 cd01870 RhoA_like RhoA-like su 99.7 5.7E-16 1.2E-20 137.9 14.3 159 66-254 2-173 (175)
214 cd01875 RhoG RhoG subfamily. 99.7 9.3E-16 2E-20 138.8 15.9 159 65-256 3-177 (191)
215 PRK12296 obgE GTPase CgtA; Rev 99.7 1.1E-15 2.4E-20 154.5 17.9 156 65-256 159-340 (500)
216 cd01881 Obg_like The Obg-like 99.7 3.2E-16 6.9E-21 139.4 12.5 150 70-254 1-175 (176)
217 cd04101 RabL4 RabL4 (Rab-like4 99.7 7.8E-16 1.7E-20 135.5 14.8 156 66-254 1-162 (164)
218 KOG0084 GTPase Rab1/YPT1, smal 99.7 4.7E-16 1E-20 134.6 12.8 158 62-253 6-169 (205)
219 PRK12297 obgE GTPase CgtA; Rev 99.7 7.2E-16 1.6E-20 154.1 15.9 153 65-256 158-327 (424)
220 PLN03071 GTP-binding nuclear p 99.7 5.3E-16 1.2E-20 143.4 13.8 159 63-256 11-172 (219)
221 cd00876 Ras Ras family. The R 99.7 8.1E-16 1.7E-20 134.4 14.0 152 67-254 1-159 (160)
222 cd01876 YihA_EngB The YihA (En 99.7 2.8E-15 6E-20 131.9 17.5 156 67-254 1-169 (170)
223 cd04133 Rop_like Rop subfamily 99.7 4.8E-16 1E-20 138.5 12.6 157 66-255 2-172 (176)
224 TIGR00450 mnmE_trmE_thdF tRNA 99.7 7.7E-16 1.7E-20 155.7 15.7 136 64-230 202-345 (442)
225 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 4.9E-16 1.1E-20 137.1 12.5 157 68-253 2-163 (164)
226 cd04161 Arl2l1_Arl13_like Arl2 99.7 5.9E-16 1.3E-20 137.0 12.8 159 67-253 1-166 (167)
227 cd04142 RRP22 RRP22 subfamily. 99.7 1.5E-15 3.3E-20 138.0 15.7 157 66-256 1-174 (198)
228 cd04137 RheB Rheb (Ras Homolog 99.7 8E-16 1.7E-20 137.7 13.5 156 66-255 2-162 (180)
229 cd04126 Rab20 Rab20 subfamily. 99.7 8.5E-16 1.8E-20 141.5 13.9 160 66-255 1-189 (220)
230 KOG0095 GTPase Rab30, small G 99.7 9.6E-16 2.1E-20 125.9 12.5 161 63-256 5-169 (213)
231 PLN03108 Rab family protein; P 99.7 1.1E-15 2.3E-20 140.5 14.4 159 64-255 5-167 (210)
232 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 2.6E-15 5.6E-20 134.6 16.5 158 63-253 3-177 (182)
233 cd04125 RabA_like RabA-like su 99.7 1E-15 2.2E-20 138.1 14.0 157 66-255 1-161 (188)
234 cd03708 GTPBP_III Domain III o 99.7 7.3E-16 1.6E-20 120.8 11.2 85 358-449 2-87 (87)
235 cd04111 Rab39 Rab39 subfamily. 99.7 9.5E-16 2.1E-20 140.9 13.6 158 65-256 2-166 (211)
236 cd03696 selB_II selB_II: this 99.7 7.4E-16 1.6E-20 119.4 10.8 83 266-352 1-83 (83)
237 cd04146 RERG_RasL11_like RERG/ 99.7 4.7E-16 1E-20 137.2 11.0 155 67-255 1-163 (165)
238 cd04130 Wrch_1 Wrch-1 subfamil 99.7 5.5E-16 1.2E-20 138.0 11.4 155 66-252 1-170 (173)
239 cd04131 Rnd Rnd subfamily. Th 99.7 3E-15 6.6E-20 133.8 15.7 157 66-253 2-173 (178)
240 cd04143 Rhes_like Rhes_like su 99.7 1.3E-15 2.9E-20 142.9 13.9 159 66-258 1-173 (247)
241 cd04117 Rab15 Rab15 subfamily. 99.7 1.8E-15 3.9E-20 133.0 13.9 154 66-254 1-160 (161)
242 COG1084 Predicted GTPase [Gene 99.7 2.1E-16 4.6E-21 147.6 8.0 168 13-197 115-296 (346)
243 cd04093 HBS1_C HBS1_C: this fa 99.6 1.9E-15 4.1E-20 123.3 12.3 87 358-449 2-107 (107)
244 PRK11058 GTPase HflX; Provisio 99.6 1.8E-15 3.9E-20 152.1 14.4 151 66-256 198-362 (426)
245 COG0370 FeoB Fe2+ transport sy 99.6 1.4E-15 3E-20 155.1 13.6 153 66-257 4-165 (653)
246 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.5E-15 5.4E-20 139.2 14.0 161 64-254 12-186 (232)
247 cd03705 EF1_alpha_III Domain I 99.6 2E-15 4.3E-20 122.5 11.0 84 358-446 2-104 (104)
248 cd03695 CysN_NodQ_II CysN_NodQ 99.6 4.1E-15 9E-20 114.3 11.5 81 266-352 1-81 (81)
249 KOG0078 GTP-binding protein SE 99.6 5.9E-15 1.3E-19 129.8 14.0 159 63-254 10-172 (207)
250 KOG0394 Ras-related GTPase [Ge 99.6 5.6E-15 1.2E-19 126.2 13.2 162 62-253 6-175 (210)
251 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.1E-14 2.4E-19 134.2 16.4 157 66-253 2-173 (222)
252 cd04148 RGK RGK subfamily. Th 99.6 4E-15 8.6E-20 137.8 13.4 157 66-256 1-163 (221)
253 TIGR00437 feoB ferrous iron tr 99.6 2.6E-15 5.7E-20 157.2 13.4 145 72-254 1-153 (591)
254 smart00176 RAN Ran (Ras-relate 99.6 3.2E-15 7E-20 135.8 12.1 148 71-255 1-153 (200)
255 KOG0098 GTPase Rab2, small G p 99.6 5.8E-15 1.3E-19 126.3 12.4 155 64-253 5-165 (216)
256 cd04104 p47_IIGP_like p47 (47- 99.6 1.2E-14 2.5E-19 132.2 15.2 165 66-259 2-187 (197)
257 PF00025 Arf: ADP-ribosylation 99.6 3.2E-15 7E-20 133.3 10.7 158 62-254 11-174 (175)
258 cd01513 Translation_factor_III 99.6 7.3E-15 1.6E-19 118.8 11.4 84 358-446 2-102 (102)
259 cd00882 Ras_like_GTPase Ras-li 99.6 8.8E-15 1.9E-19 125.5 12.1 148 70-252 1-156 (157)
260 cd04094 selB_III This family r 99.6 1.5E-14 3.3E-19 115.5 12.4 95 347-446 1-97 (97)
261 PRK09866 hypothetical protein; 99.6 5.7E-14 1.2E-18 142.8 16.9 115 127-254 229-351 (741)
262 cd04129 Rho2 Rho2 subfamily. 99.6 1.7E-14 3.7E-19 130.1 11.6 158 66-255 2-172 (187)
263 KOG0080 GTPase Rab18, small G 99.6 2.5E-14 5.3E-19 119.2 11.2 157 64-253 10-171 (209)
264 cd01896 DRG The developmentall 99.6 6.9E-14 1.5E-18 130.3 15.5 81 67-163 2-89 (233)
265 PF01926 MMR_HSR1: 50S ribosom 99.6 1.4E-14 3.1E-19 120.0 9.7 107 67-190 1-116 (116)
266 COG3596 Predicted GTPase [Gene 99.6 4.6E-14 1E-18 129.0 13.5 170 62-260 36-226 (296)
267 cd04103 Centaurin_gamma Centau 99.6 4.5E-14 9.7E-19 123.7 12.1 151 66-254 1-157 (158)
268 KOG1489 Predicted GTP-binding 99.5 5.2E-14 1.1E-18 130.5 12.5 149 65-254 196-365 (366)
269 PF00071 Ras: Ras family; Int 99.5 4.1E-14 8.8E-19 124.2 11.2 156 67-254 1-159 (162)
270 cd04105 SR_beta Signal recogni 99.5 1.4E-13 3.1E-18 125.6 14.8 111 67-195 2-123 (203)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 1.3E-13 2.9E-18 125.2 14.4 167 66-257 1-185 (196)
272 COG2262 HflX GTPases [General 99.5 4.8E-14 1E-18 135.9 11.7 154 63-256 190-356 (411)
273 PTZ00132 GTP-binding nuclear p 99.5 1.2E-13 2.6E-18 127.5 14.1 160 62-256 6-168 (215)
274 KOG0087 GTPase Rab11/YPT3, sma 99.5 5.3E-14 1.1E-18 123.2 10.2 144 63-231 12-161 (222)
275 cd03688 eIF2_gamma_II eIF2_gam 99.5 1.7E-13 3.7E-18 108.3 10.8 93 261-353 1-112 (113)
276 cd01873 RhoBTB RhoBTB subfamil 99.5 1.7E-13 3.8E-18 124.1 12.6 158 65-253 2-193 (195)
277 cd01850 CDC_Septin CDC/Septin. 99.5 4.2E-12 9.1E-17 121.1 22.3 150 65-228 4-184 (276)
278 KOG0073 GTP-binding ADP-ribosy 99.5 2.8E-13 6E-18 113.7 12.3 155 63-253 14-175 (185)
279 cd04095 CysN_NoDQ_III TCysN_No 99.5 2.6E-13 5.7E-18 109.7 10.2 83 358-446 2-103 (103)
280 KOG0093 GTPase Rab3, small G p 99.5 4.3E-13 9.3E-18 110.2 11.3 156 65-253 21-180 (193)
281 PRK13768 GTPase; Provisional 99.5 9E-13 1.9E-17 124.2 14.9 177 66-257 3-248 (253)
282 KOG0086 GTPase Rab4, small G p 99.5 7.5E-13 1.6E-17 109.4 11.8 145 65-231 9-156 (214)
283 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.4E-12 5.2E-17 117.0 16.2 115 66-195 1-143 (202)
284 KOG1191 Mitochondrial GTPase [ 99.4 2.9E-13 6.3E-18 132.5 10.0 162 63-255 266-449 (531)
285 COG0536 Obg Predicted GTPase [ 99.4 3.3E-12 7.2E-17 120.1 14.9 155 65-256 159-333 (369)
286 PLN00023 GTP-binding protein; 99.4 1.4E-12 3.1E-17 124.5 12.4 139 64-217 20-190 (334)
287 PRK09435 membrane ATPase/prote 99.4 4.4E-12 9.5E-17 122.8 15.1 176 62-256 53-260 (332)
288 KOG0079 GTP-binding protein H- 99.4 1.6E-12 3.6E-17 106.9 10.1 143 66-231 9-154 (198)
289 KOG0075 GTP-binding ADP-ribosy 99.4 1.1E-12 2.4E-17 107.8 8.1 155 64-255 19-181 (186)
290 KOG1490 GTP-binding protein CR 99.4 7.6E-14 1.6E-18 136.3 1.0 198 12-231 114-326 (620)
291 COG1100 GTPase SAR1 and relate 99.4 1.1E-11 2.4E-16 114.5 15.4 116 65-197 5-127 (219)
292 PF08477 Miro: Miro-like prote 99.4 7.2E-13 1.6E-17 110.1 6.2 113 67-192 1-119 (119)
293 PF05049 IIGP: Interferon-indu 99.4 5.8E-12 1.2E-16 122.8 12.7 170 63-260 33-222 (376)
294 PF09439 SRPRB: Signal recogni 99.4 4.3E-12 9.2E-17 111.8 10.2 124 66-210 4-144 (181)
295 COG4917 EutP Ethanolamine util 99.4 5.3E-12 1.2E-16 101.2 9.7 138 67-254 3-144 (148)
296 PF03029 ATP_bind_1: Conserved 99.3 7.8E-12 1.7E-16 116.4 11.7 169 70-254 1-235 (238)
297 COG1163 DRG Predicted GTPase [ 99.3 8.9E-12 1.9E-16 116.3 11.8 86 63-164 61-153 (365)
298 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 7.8E-11 1.7E-15 108.5 16.1 160 67-255 1-175 (232)
299 KOG0081 GTPase Rab27, small G 99.3 2.7E-12 5.9E-17 106.9 5.7 145 65-231 9-166 (219)
300 KOG0083 GTPase Rab26/Rab37, sm 99.3 6E-13 1.3E-17 107.5 1.8 141 70-232 2-146 (192)
301 KOG0088 GTPase Rab21, small G 99.3 5.6E-12 1.2E-16 104.9 7.3 159 64-255 12-174 (218)
302 cd01899 Ygr210 Ygr210 subfamil 99.3 5.6E-11 1.2E-15 115.1 15.5 88 68-163 1-111 (318)
303 KOG0097 GTPase Rab14, small G 99.3 8.4E-11 1.8E-15 96.0 13.0 141 64-231 10-158 (215)
304 COG5192 BMS1 GTP-binding prote 99.3 2.3E-10 5E-15 113.2 18.5 222 63-316 67-301 (1077)
305 KOG0076 GTP-binding ADP-ribosy 99.3 2.6E-11 5.7E-16 102.9 10.1 171 60-256 12-187 (197)
306 KOG0091 GTPase Rab39, small G 99.3 4.1E-11 8.9E-16 100.5 10.7 155 65-253 8-170 (213)
307 cd01853 Toc34_like Toc34-like 99.3 2E-10 4.3E-15 107.6 16.4 119 62-195 28-163 (249)
308 cd03692 mtIF2_IVc mtIF2_IVc: t 99.2 9.6E-11 2.1E-15 90.7 11.3 81 268-351 3-83 (84)
309 KOG0070 GTP-binding ADP-ribosy 99.2 1.8E-11 3.9E-16 105.7 7.9 160 62-256 14-178 (181)
310 PTZ00099 rab6; Provisional 99.2 4.3E-11 9.3E-16 106.6 10.6 113 126-257 27-143 (176)
311 PF03308 ArgK: ArgK protein; 99.2 9.8E-11 2.1E-15 107.4 12.0 169 62-254 26-228 (266)
312 PRK09602 translation-associate 99.2 3.6E-10 7.8E-15 112.8 15.8 81 66-162 2-113 (396)
313 KOG0090 Signal recognition par 99.2 2.2E-10 4.9E-15 100.8 12.5 127 66-211 39-178 (238)
314 PF04548 AIG1: AIG1 family; I 99.2 5.8E-10 1.3E-14 102.5 15.9 167 66-256 1-186 (212)
315 KOG1532 GTPase XAB1, interacts 99.2 2.7E-10 5.7E-15 103.9 13.2 176 64-255 18-263 (366)
316 KOG4252 GTP-binding protein [S 99.2 1.3E-11 2.7E-16 105.0 4.2 145 64-231 19-166 (246)
317 TIGR00750 lao LAO/AO transport 99.2 5.4E-10 1.2E-14 108.2 16.0 173 63-254 32-236 (300)
318 KOG0395 Ras-related GTPase [Ge 99.2 1.4E-10 3E-15 104.7 10.3 157 65-255 3-164 (196)
319 COG1703 ArgK Putative periplas 99.1 8.7E-10 1.9E-14 102.5 13.8 179 60-256 46-254 (323)
320 TIGR02836 spore_IV_A stage IV 99.1 6.4E-10 1.4E-14 108.1 13.1 172 62-256 14-237 (492)
321 TIGR00073 hypB hydrogenase acc 99.1 7.6E-10 1.7E-14 101.4 12.2 168 62-254 19-205 (207)
322 PF00350 Dynamin_N: Dynamin fa 99.1 5E-10 1.1E-14 98.9 9.2 65 127-191 100-168 (168)
323 PF00735 Septin: Septin; Inte 99.0 8.6E-09 1.9E-13 98.3 16.8 143 65-216 4-176 (281)
324 KOG0071 GTP-binding ADP-ribosy 99.0 4.8E-09 1E-13 86.0 12.5 156 65-255 17-177 (180)
325 PF03144 GTP_EFTU_D2: Elongati 99.0 2.3E-09 4.9E-14 81.1 10.0 71 280-351 1-74 (74)
326 cd01342 Translation_Factor_II_ 99.0 3.6E-09 7.8E-14 81.0 11.2 82 266-351 1-82 (83)
327 TIGR00101 ureG urease accessor 99.0 2.7E-09 5.8E-14 96.9 11.8 165 66-255 2-195 (199)
328 PTZ00258 GTP-binding protein; 99.0 7.7E-09 1.7E-13 102.2 15.6 84 63-162 19-126 (390)
329 cd03690 Tet_II Tet_II: This su 99.0 2.5E-09 5.5E-14 83.0 9.7 81 263-352 1-85 (85)
330 TIGR00991 3a0901s02IAP34 GTP-b 99.0 4.5E-09 9.8E-14 100.1 12.8 117 64-195 37-167 (313)
331 PRK10463 hydrogenase nickel in 99.0 3.8E-09 8.2E-14 99.9 11.9 166 63-253 102-286 (290)
332 smart00053 DYNc Dynamin, GTPas 99.0 4.8E-09 1E-13 97.3 11.9 68 128-196 125-207 (240)
333 COG5019 CDC3 Septin family pro 99.0 7.2E-08 1.6E-12 92.3 19.7 148 62-224 20-199 (373)
334 PRK09601 GTP-binding protein Y 99.0 1.2E-08 2.7E-13 99.6 14.2 81 66-162 3-107 (364)
335 cd04092 mtEFG2_II_like mtEFG2_ 98.9 8E-09 1.7E-13 79.9 9.8 78 266-351 1-82 (83)
336 KOG0074 GTP-binding ADP-ribosy 98.9 2.7E-09 5.8E-14 87.5 6.7 144 63-231 15-164 (185)
337 KOG0393 Ras-related small GTPa 98.9 2.4E-09 5.2E-14 94.9 7.0 156 65-252 4-175 (198)
338 COG0378 HypB Ni2+-binding GTPa 98.9 4.4E-09 9.4E-14 92.1 8.1 164 65-254 13-199 (202)
339 KOG0072 GTP-binding ADP-ribosy 98.9 1.7E-09 3.6E-14 89.0 5.1 157 64-256 17-179 (182)
340 cd03691 BipA_TypA_II BipA_TypA 98.9 1.9E-08 4.1E-13 78.4 10.8 81 266-351 1-85 (86)
341 KOG0410 Predicted GTP binding 98.9 7.2E-09 1.6E-13 96.8 9.4 148 64-256 177-341 (410)
342 cd04088 EFG_mtEFG_II EFG_mtEFG 98.9 1.8E-08 3.8E-13 78.0 10.1 79 266-352 1-83 (83)
343 KOG2486 Predicted GTPase [Gene 98.9 4.9E-09 1.1E-13 96.2 7.8 159 64-252 135-312 (320)
344 cd03689 RF3_II RF3_II: this su 98.9 2.1E-08 4.6E-13 77.7 10.1 76 269-352 2-84 (85)
345 cd03699 lepA_II lepA_II: This 98.9 2.9E-08 6.4E-13 77.2 10.8 82 266-352 1-86 (86)
346 PF14578 GTP_EFTU_D4: Elongati 98.8 1E-07 2.2E-12 71.8 12.1 78 264-351 3-80 (81)
347 KOG3883 Ras family small GTPas 98.8 6.4E-08 1.4E-12 80.6 11.3 161 65-260 9-179 (198)
348 cd04091 mtEFG1_II_like mtEFG1_ 98.8 5.8E-08 1.3E-12 74.6 10.1 76 266-351 1-80 (81)
349 TIGR00993 3a0901s04IAP86 chlor 98.8 1E-07 2.3E-12 98.1 14.2 116 65-195 118-250 (763)
350 KOG1673 Ras GTPases [General f 98.8 6.4E-08 1.4E-12 80.8 9.7 160 63-253 18-183 (205)
351 KOG0077 Vesicle coat complex C 98.7 4.4E-08 9.6E-13 82.8 8.7 113 63-195 18-135 (193)
352 KOG2655 Septin family protein 98.7 8.5E-07 1.8E-11 85.7 18.1 144 62-215 18-191 (366)
353 KOG1547 Septin CDC10 and relat 98.7 3.9E-07 8.4E-12 81.9 14.1 142 63-216 44-218 (336)
354 KOG1534 Putative transcription 98.7 1.3E-07 2.9E-12 83.3 9.3 127 67-196 5-179 (273)
355 KOG3886 GTP-binding protein [S 98.7 2.4E-07 5.1E-12 82.8 11.0 117 65-196 4-131 (295)
356 cd01900 YchF YchF subfamily. 98.7 6.8E-08 1.5E-12 91.5 8.0 80 68-163 1-104 (274)
357 cd01859 MJ1464 MJ1464. This f 98.6 2.2E-07 4.8E-12 81.0 10.6 89 147-256 8-96 (156)
358 PRK10416 signal recognition pa 98.5 1.1E-06 2.3E-11 85.5 13.2 146 65-227 114-293 (318)
359 COG0012 Predicted GTPase, prob 98.5 8.5E-07 1.8E-11 85.6 11.9 90 65-163 2-109 (372)
360 cd01855 YqeH YqeH. YqeH is an 98.5 5.2E-07 1.1E-11 81.4 10.0 106 136-256 19-125 (190)
361 TIGR00064 ftsY signal recognit 98.5 9.9E-07 2.2E-11 83.9 12.3 126 65-196 72-232 (272)
362 KOG0096 GTPase Ran/TC4/GSP1 (n 98.5 1.4E-07 3.1E-12 81.6 5.5 142 63-231 8-154 (216)
363 COG3640 CooC CO dehydrogenase 98.5 5.2E-07 1.1E-11 81.3 9.3 65 127-194 133-198 (255)
364 cd03700 eEF2_snRNP_like_II EF2 98.5 1.5E-06 3.3E-11 68.6 10.1 81 267-351 2-92 (93)
365 TIGR01425 SRP54_euk signal rec 98.5 1.3E-06 2.8E-11 87.5 11.8 125 65-195 100-253 (429)
366 KOG1707 Predicted Ras related/ 98.5 8.8E-07 1.9E-11 89.2 10.5 116 63-195 7-129 (625)
367 cd01858 NGP_1 NGP-1. Autoanti 98.5 6.9E-07 1.5E-11 78.0 8.8 90 146-255 3-94 (157)
368 cd01856 YlqF YlqF. Proteins o 98.5 9.9E-07 2.1E-11 78.2 9.9 99 135-256 2-101 (171)
369 cd03115 SRP The signal recogni 98.5 2.3E-06 5E-11 75.9 12.2 125 67-196 2-154 (173)
370 KOG1533 Predicted GTPase [Gene 98.5 1E-06 2.3E-11 79.0 9.5 128 67-195 4-177 (290)
371 KOG1486 GTP-binding protein DR 98.5 1.5E-06 3.1E-11 78.8 10.4 85 64-164 61-152 (364)
372 PRK14722 flhF flagellar biosyn 98.4 2E-06 4.4E-11 84.7 12.1 128 65-195 137-295 (374)
373 PRK14974 cell division protein 98.4 1.5E-06 3.2E-11 84.8 10.7 125 65-195 140-293 (336)
374 KOG0448 Mitofusin 1 GTPase, in 98.4 1.3E-06 2.9E-11 89.3 10.2 164 63-229 107-309 (749)
375 KOG1954 Endocytosis/signaling 98.4 4.7E-06 1E-10 79.5 13.0 135 66-201 59-231 (532)
376 TIGR03596 GTPase_YlqF ribosome 98.4 2.1E-06 4.6E-11 82.2 10.7 100 135-257 4-104 (276)
377 KOG4423 GTP-binding protein-li 98.4 7.1E-08 1.5E-12 83.1 0.3 159 65-254 25-192 (229)
378 cd04090 eEF2_II_snRNP Loc2 eEF 98.4 6E-06 1.3E-10 65.3 11.3 69 267-335 2-80 (94)
379 cd00066 G-alpha G protein alph 98.4 4.5E-06 9.7E-11 81.4 12.7 73 121-194 154-241 (317)
380 cd03114 ArgK-like The function 98.4 3.4E-06 7.3E-11 72.8 10.5 117 68-192 2-148 (148)
381 cd04178 Nucleostemin_like Nucl 98.4 5.9E-07 1.3E-11 79.5 5.8 56 65-138 117-172 (172)
382 cd01858 NGP_1 NGP-1. Autoanti 98.4 6.5E-07 1.4E-11 78.2 6.0 57 64-138 101-157 (157)
383 KOG3905 Dynein light intermedi 98.3 6.3E-06 1.4E-10 77.4 11.9 157 66-254 53-288 (473)
384 smart00275 G_alpha G protein a 98.3 6.6E-06 1.4E-10 81.0 12.2 74 120-194 176-264 (342)
385 PF00448 SRP54: SRP54-type pro 98.3 5.8E-06 1.2E-10 74.8 10.9 126 66-196 2-155 (196)
386 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 4.3E-06 9.3E-11 71.6 9.2 78 143-231 3-82 (141)
387 cd01849 YlqF_related_GTPase Yl 98.3 5.2E-06 1.1E-10 72.3 9.1 83 153-255 1-84 (155)
388 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.9E-06 1.1E-10 80.1 9.7 100 134-256 6-106 (287)
389 cd02036 MinD Bacterial cell di 98.2 1.9E-05 4.2E-10 70.1 12.2 122 70-195 5-128 (179)
390 PRK11889 flhF flagellar biosyn 98.2 1.3E-05 2.7E-10 78.8 11.1 126 66-196 242-392 (436)
391 cd03110 Fer4_NifH_child This p 98.2 3.6E-05 7.8E-10 68.6 13.4 82 126-216 91-172 (179)
392 cd01849 YlqF_related_GTPase Yl 98.2 2.5E-06 5.4E-11 74.3 5.7 57 64-138 99-155 (155)
393 PF09173 eIF2_C: Initiation fa 98.2 1.8E-05 4E-10 60.7 9.4 78 360-446 2-88 (88)
394 TIGR03597 GTPase_YqeH ribosome 98.2 1.2E-05 2.5E-10 80.0 10.4 102 138-254 50-151 (360)
395 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 2.8E-06 6.1E-11 72.7 5.3 54 67-138 85-138 (141)
396 PRK00771 signal recognition pa 98.2 1.5E-05 3.2E-10 80.6 11.0 127 65-195 95-246 (437)
397 PF02492 cobW: CobW/HypB/UreG, 98.1 1.3E-05 2.8E-10 71.5 9.5 139 67-208 2-168 (178)
398 PF03193 DUF258: Protein of un 98.1 3.2E-06 7E-11 73.2 5.2 64 66-141 36-100 (161)
399 TIGR00157 ribosome small subun 98.1 5.7E-06 1.2E-10 77.7 7.2 85 148-252 33-119 (245)
400 cd03112 CobW_like The function 98.1 9.3E-06 2E-10 70.9 8.1 63 127-193 86-158 (158)
401 cd01855 YqeH YqeH. YqeH is an 98.1 4.1E-06 9E-11 75.5 5.6 63 66-138 128-190 (190)
402 PRK12289 GTPase RsgA; Reviewed 98.1 1.4E-05 3.1E-10 78.6 9.6 83 149-252 87-171 (352)
403 PRK12727 flagellar biosynthesi 98.1 4.2E-05 9E-10 78.1 12.8 125 65-195 350-498 (559)
404 PRK10867 signal recognition pa 98.1 4.5E-05 9.9E-10 76.9 12.3 127 65-195 100-254 (433)
405 PRK12726 flagellar biosynthesi 98.0 3.4E-05 7.4E-10 75.6 10.8 127 65-196 206-357 (407)
406 cd02038 FleN-like FleN is a me 98.0 6.3E-05 1.4E-09 64.2 11.3 105 70-194 5-110 (139)
407 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.1E-05 2.3E-10 77.8 6.7 57 64-138 120-176 (287)
408 PRK00098 GTPase RsgA; Reviewed 98.0 2.9E-05 6.3E-10 75.1 9.7 83 149-251 78-162 (298)
409 TIGR03596 GTPase_YlqF ribosome 98.0 9.5E-06 2.1E-10 77.7 6.2 57 64-138 117-173 (276)
410 KOG0082 G-protein alpha subuni 98.0 0.00022 4.7E-09 69.3 15.1 82 113-195 180-276 (354)
411 cd03111 CpaE_like This protein 98.0 5.9E-05 1.3E-09 61.1 9.6 100 68-190 2-106 (106)
412 cd01856 YlqF YlqF. Proteins o 98.0 1.3E-05 2.7E-10 71.1 6.1 56 65-138 115-170 (171)
413 TIGR00487 IF-2 translation ini 98.0 0.00033 7.2E-09 73.8 17.2 183 133-351 392-575 (587)
414 cd01851 GBP Guanylate-binding 98.0 2.1E-05 4.5E-10 72.9 7.3 121 62-194 4-147 (224)
415 PRK05306 infB translation init 98.0 0.00027 5.9E-09 76.4 16.7 183 133-351 594-777 (787)
416 PRK12288 GTPase RsgA; Reviewed 98.0 1.3E-05 2.7E-10 79.0 6.0 63 67-141 207-270 (347)
417 COG1161 Predicted GTPases [Gen 97.9 1.1E-05 2.4E-10 78.8 5.4 57 63-137 130-186 (322)
418 KOG1487 GTP-binding protein DR 97.9 1.9E-05 4.1E-10 72.1 6.4 83 66-164 60-149 (358)
419 PRK13796 GTPase YqeH; Provisio 97.9 6.1E-05 1.3E-09 75.0 10.7 99 140-254 58-157 (365)
420 CHL00189 infB translation init 97.9 0.00032 6.9E-09 75.2 16.5 182 133-351 549-731 (742)
421 PF05783 DLIC: Dynein light in 97.9 0.00011 2.4E-09 74.8 12.3 61 179-255 195-263 (472)
422 cd01854 YjeQ_engC YjeQ/EngC. 97.9 4.6E-05 1E-09 73.3 9.0 83 149-252 76-160 (287)
423 TIGR00092 GTP-binding protein 97.9 2.3E-05 5.1E-10 76.9 7.0 90 66-163 3-109 (368)
424 COG1162 Predicted GTPases [Gen 97.9 1.4E-05 3E-10 75.6 4.6 64 66-141 165-229 (301)
425 TIGR00959 ffh signal recogniti 97.9 7.1E-05 1.5E-09 75.5 9.9 127 65-195 99-253 (428)
426 PRK06731 flhF flagellar biosyn 97.8 0.00018 3.8E-09 68.2 11.3 127 65-196 75-226 (270)
427 PRK12723 flagellar biosynthesi 97.8 0.00011 2.4E-09 73.2 10.3 126 66-196 175-327 (388)
428 PRK12724 flagellar biosynthesi 97.8 8.7E-05 1.9E-09 73.9 9.3 126 66-196 224-374 (432)
429 PRK12289 GTPase RsgA; Reviewed 97.8 2E-05 4.3E-10 77.6 4.6 63 67-141 174-237 (352)
430 PRK05703 flhF flagellar biosyn 97.8 0.00029 6.2E-09 71.4 13.1 125 66-195 222-371 (424)
431 KOG1491 Predicted GTP-binding 97.8 3.8E-05 8.3E-10 72.8 6.1 96 59-163 14-126 (391)
432 COG0532 InfB Translation initi 97.8 0.0011 2.4E-08 67.0 16.7 105 243-351 392-496 (509)
433 PRK01889 GTPase RsgA; Reviewed 97.8 0.00011 2.5E-09 72.7 9.6 82 149-251 110-192 (356)
434 cd01859 MJ1464 MJ1464. This f 97.8 4.4E-05 9.5E-10 66.4 5.9 57 64-138 100-156 (156)
435 PRK12288 GTPase RsgA; Reviewed 97.8 0.00017 3.6E-09 71.1 10.5 87 149-253 118-205 (347)
436 TIGR00157 ribosome small subun 97.7 3.5E-05 7.7E-10 72.3 5.1 62 66-140 121-183 (245)
437 COG1419 FlhF Flagellar GTP-bin 97.7 0.00043 9.4E-09 68.1 12.3 128 64-196 202-353 (407)
438 PF09547 Spore_IV_A: Stage IV 97.7 0.00077 1.7E-08 66.4 13.8 175 62-256 14-237 (492)
439 PRK14721 flhF flagellar biosyn 97.7 0.00019 4.1E-09 72.0 9.6 129 65-196 191-341 (420)
440 PRK13796 GTPase YqeH; Provisio 97.7 5E-05 1.1E-09 75.6 5.4 61 65-138 160-220 (365)
441 TIGR03597 GTPase_YqeH ribosome 97.7 5.7E-05 1.2E-09 75.1 5.8 116 66-195 155-280 (360)
442 KOG2485 Conserved ATP/GTP bind 97.7 0.00012 2.6E-09 69.0 7.1 66 62-137 140-205 (335)
443 cd01854 YjeQ_engC YjeQ/EngC. 97.7 5.9E-05 1.3E-09 72.6 5.3 64 66-141 162-226 (287)
444 cd02037 MRP-like MRP (Multiple 97.7 0.00014 3.1E-09 64.1 7.4 123 70-194 5-134 (169)
445 COG0523 Putative GTPases (G3E 97.6 0.00042 9E-09 67.4 11.0 148 67-228 3-184 (323)
446 PRK06995 flhF flagellar biosyn 97.6 0.00038 8.3E-09 71.0 11.2 126 66-195 257-405 (484)
447 cd03702 IF2_mtIF2_II This fami 97.6 0.00051 1.1E-08 54.1 9.4 76 267-352 2-79 (95)
448 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00049 1.1E-08 54.0 9.4 73 68-168 2-75 (99)
449 cd03703 aeIF5B_II aeIF5B_II: T 97.6 0.00073 1.6E-08 54.2 10.2 81 267-351 2-93 (110)
450 PRK14723 flhF flagellar biosyn 97.6 0.00035 7.7E-09 74.7 10.8 125 66-195 186-337 (767)
451 COG0541 Ffh Signal recognition 97.6 0.00039 8.4E-09 68.6 9.9 127 63-194 98-252 (451)
452 PHA02518 ParA-like protein; Pr 97.6 0.0012 2.6E-08 60.2 12.8 125 67-194 2-146 (211)
453 KOG0780 Signal recognition par 97.6 0.00035 7.7E-09 67.5 8.9 124 66-194 102-253 (483)
454 cd02042 ParA ParA and ParB of 97.6 0.00063 1.4E-08 54.7 9.2 80 68-172 2-82 (104)
455 PRK13695 putative NTPase; Prov 97.5 0.00073 1.6E-08 59.9 9.7 122 66-192 1-137 (174)
456 COG1162 Predicted GTPases [Gen 97.5 0.00075 1.6E-08 64.0 9.6 83 151-252 79-163 (301)
457 KOG1424 Predicted GTP-binding 97.5 0.00011 2.5E-09 73.3 4.2 59 61-137 310-368 (562)
458 KOG3887 Predicted small GTPase 97.4 0.00033 7.1E-09 63.4 6.6 148 67-230 29-187 (347)
459 cd02035 ArsA ArsA ATPase funct 97.4 0.00074 1.6E-08 62.2 9.0 67 128-194 114-183 (217)
460 TIGR01969 minD_arch cell divis 97.4 0.0028 6.1E-08 59.5 13.2 66 127-194 108-173 (251)
461 PRK11537 putative GTP-binding 97.4 0.0019 4E-08 63.0 11.6 88 128-227 91-186 (318)
462 PRK00098 GTPase RsgA; Reviewed 97.4 0.00023 5.1E-09 68.8 5.3 23 66-88 165-187 (298)
463 KOG0447 Dynamin-like GTP bindi 97.4 0.0025 5.3E-08 64.2 12.3 128 65-195 308-493 (980)
464 TIGR02475 CobW cobalamin biosy 97.3 0.0043 9.4E-08 61.1 13.7 22 67-88 6-27 (341)
465 TIGR03348 VI_IcmF type VI secr 97.3 0.00078 1.7E-08 77.0 9.1 113 67-195 113-257 (1169)
466 TIGR01007 eps_fam capsular exo 97.3 0.0012 2.6E-08 60.2 8.7 68 127-195 127-194 (204)
467 cd02117 NifH_like This family 97.3 0.0018 3.8E-08 59.4 9.8 68 126-194 115-188 (212)
468 PF01656 CbiA: CobQ/CobB/MinD/ 97.3 0.00067 1.4E-08 61.0 6.9 125 70-196 4-163 (195)
469 PRK13849 putative crown gall t 97.2 0.0035 7.6E-08 58.2 11.3 123 67-192 3-151 (231)
470 cd03701 IF2_IF5B_II IF2_IF5B_I 97.2 0.0029 6.3E-08 50.0 9.1 76 267-351 2-78 (95)
471 KOG3859 Septins (P-loop GTPase 97.2 0.0014 3.1E-08 60.6 8.3 136 63-213 40-207 (406)
472 CHL00175 minD septum-site dete 97.2 0.0042 9.1E-08 59.6 12.0 65 127-193 126-190 (281)
473 COG0552 FtsY Signal recognitio 97.2 0.0038 8.3E-08 59.9 11.2 128 63-194 137-297 (340)
474 COG1618 Predicted nucleotide k 97.2 0.008 1.7E-07 51.5 11.7 34 64-97 4-37 (179)
475 KOG4181 Uncharacterized conser 97.2 0.0053 1.1E-07 58.6 11.7 144 64-213 187-375 (491)
476 TIGR00491 aIF-2 translation in 97.2 0.016 3.4E-07 61.2 16.5 77 272-353 473-550 (590)
477 cd02032 Bchl_like This family 97.2 0.003 6.5E-08 60.2 10.3 66 127-193 115-184 (267)
478 KOG2743 Cobalamin synthesis pr 97.1 0.0051 1.1E-07 57.7 10.4 75 127-207 145-236 (391)
479 cd04178 Nucleostemin_like Nucl 97.0 0.0014 3.1E-08 57.9 6.4 45 153-198 1-47 (172)
480 KOG2484 GTPase [General functi 97.0 0.00054 1.2E-08 66.6 3.4 57 63-137 250-306 (435)
481 PRK10751 molybdopterin-guanine 97.0 0.0053 1.1E-07 54.1 9.2 29 65-93 6-34 (173)
482 KOG2423 Nucleolar GTPase [Gene 96.9 0.00031 6.7E-09 67.9 1.3 34 55-88 297-330 (572)
483 CHL00072 chlL photochlorophyll 96.9 0.0051 1.1E-07 59.3 9.6 65 127-192 115-183 (290)
484 KOG0099 G protein subunit Galp 96.9 0.0053 1.2E-07 56.4 8.9 80 115-195 189-283 (379)
485 TIGR01968 minD_bact septum sit 96.8 0.0098 2.1E-07 56.1 10.6 65 127-193 111-175 (261)
486 TIGR01281 DPOR_bchL light-inde 96.8 0.0064 1.4E-07 57.9 9.0 66 127-193 115-184 (268)
487 cd03116 MobB Molybdenum is an 96.8 0.0085 1.8E-07 52.2 8.8 28 67-94 3-30 (159)
488 COG1341 Predicted GTPase or GT 96.7 0.0078 1.7E-07 59.2 9.0 36 63-98 71-106 (398)
489 PRK08099 bifunctional DNA-bind 96.7 0.0048 1.1E-07 62.0 7.8 27 62-88 216-242 (399)
490 cd02040 NifH NifH gene encodes 96.7 0.015 3.2E-07 55.3 10.7 29 67-95 3-31 (270)
491 PF06858 NOG1: Nucleolar GTP-b 96.7 0.0085 1.9E-07 41.9 6.5 48 144-192 5-58 (58)
492 PRK14491 putative bifunctional 96.7 0.26 5.6E-06 52.4 20.8 33 65-97 10-42 (597)
493 cd02034 CooC The accessory pro 96.7 0.011 2.4E-07 48.5 8.3 32 67-98 1-32 (116)
494 COG4148 ModC ABC-type molybdat 96.6 0.043 9.4E-07 51.4 12.7 24 66-89 25-48 (352)
495 PRK13185 chlL protochlorophyll 96.6 0.013 2.8E-07 55.8 9.8 65 127-192 117-185 (270)
496 cd00550 ArsA_ATPase Oxyanion-t 96.6 0.041 8.9E-07 51.9 12.8 70 126-195 123-203 (254)
497 KOG0781 Signal recognition par 96.5 0.0027 5.8E-08 63.2 4.4 136 60-195 373-544 (587)
498 PRK13232 nifH nitrogenase redu 96.5 0.017 3.7E-07 55.2 9.8 30 67-96 3-32 (273)
499 COG1763 MobB Molybdopterin-gua 96.4 0.021 4.5E-07 49.6 8.8 32 66-97 3-34 (161)
500 PRK04004 translation initiatio 96.4 0.021 4.6E-07 60.4 10.5 76 272-352 475-551 (586)
No 1
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-84 Score=595.54 Aligned_cols=394 Identities=70% Similarity=1.117 Sum_probs=381.9
Q ss_pred hhhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEec
Q 013007 56 MATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDC 135 (451)
Q Consensus 56 ~~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDt 135 (451)
...+.+.+|+.||+.+||+|||||||..++++.+.+.|...+..+...|..++|+.||+||+.+++.|++..++|.-+||
T Consensus 45 ~~~f~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DC 124 (449)
T KOG0460|consen 45 KAVFVRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDC 124 (449)
T ss_pred ccccccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCC
Confidence 34577899999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|||.||+++|+.+.++.|++||||.|++|..+||+||+.++++.|+++++|++||.|++++++.++.++.+++++|..+|
T Consensus 125 PGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 125 PGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred CchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVG 295 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~g 295 (451)
|++++.|+|..||+.++++++++.+.+.+..|++++++++|.|.|+.++||.|+|.++|.++|+|+|++|++++|+||+|
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCC
Q 013007 296 EEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGG 375 (451)
Q Consensus 296 d~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~ 375 (451)
|++.+.+.++ ..+..|.+|+++++.+++|.|||++++.|+|++.++++||++++.|++..+.++|+|++++|..++|+
T Consensus 285 ~e~eivG~~~--~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~~k~ea~~YiLsk~EGG 362 (449)
T KOG0460|consen 285 DEVEIVGHNK--TLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPHNKFEAQLYILSKEEGG 362 (449)
T ss_pred CEEEEeccCc--ceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccccceeeEEEEEEEhhhCC
Confidence 9999988655 47889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 376 RHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 376 ~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+++|+..+|+|++|+.+.++++++....+.+++++||.+.+++.|.+|+++++|+||.||++|+|||.|.|+++++
T Consensus 363 R~~pf~s~y~~q~fs~TwD~~~~v~~~~~~~mvMPGe~~~~~~~Li~pm~le~GqrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 363 RHKPFVSGYRPQMFSRTWDVTGRVDIPPEKEMVMPGENVKVEVTLIRPMPLEKGQRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred CccchhhccchhheeeecccceEEEccChHhcccCCCCeEEEEEEecccccCCCceeeEccCCeeeeeeeEeeeee
Confidence 9999999999999999999999999887789999999999999999999999999999999999999999999864
No 2
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-80 Score=558.26 Aligned_cols=391 Identities=74% Similarity=1.162 Sum_probs=373.3
Q ss_pred hhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 57 ~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
..+.+.+++.||+.|||+|||||||..+|+..+.+.+...+..+...|..++|++||+||+.++..|++.++.+..+|||
T Consensus 4 ~kf~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred hhhcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 45778899999999999999999999999999999888888878888999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||.||+++|+.+++++|++||||+|.+|..+||++|+.++++.|+|.+++++||+|+++++++++.++.+++++|..|+|
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
++++.|++..||+..++++..|. ..+.+|++++++++|.|.|+.++||+|+|.++|++.|+|+|++|+|++|+|++||
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~--~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~ 241 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWE--AKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGE 241 (394)
T ss_pred CCCCcceeechhhhhhcCCcchH--HHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCC
Confidence 99999999999999888766644 7799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
.+.+.+... ..+..+.+++++++.++++.|||+|++.|++.++.++.||++|+.|++..+..+|+|++++|..++|++
T Consensus 242 eveivG~~~--~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~ph~kfeaevyvL~keeggr 319 (394)
T COG0050 242 EVEIVGIKE--TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGR 319 (394)
T ss_pred EEEEecccc--cceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccccceeeEEEEEEecccCCC
Confidence 999977543 367889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
++|+..||+|++|+++.++++.+...+...++++||.+.+.++|.+|+.+++|.||.+|++|||+|.|.|+++++
T Consensus 320 htpff~~yrpqfyfRttDVtg~i~l~eg~emvmpgdnv~~~veLi~pia~e~G~rFaIreGgrtvgaGvV~~i~~ 394 (394)
T COG0050 320 HTPFFHGYRPQFYFRTTDVTGAITLPEGVEMVMPGDNVKMVVELIHPIAMEEGLRFAIREGGRTVGAGVVTKIIE 394 (394)
T ss_pred CCCcccCccceeEEEeeeeeeeEeccCCcceecCCCceEEEEEEeeeeecCCCCEEEEEeCCeeeeeeEEeeecC
Confidence 999999999999999999999888877889999999999999999999999999999999999999999999864
No 3
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.7e-77 Score=603.21 Aligned_cols=447 Identities=88% Similarity=1.298 Sum_probs=392.0
Q ss_pred CccccccCCCCcccccCCcccchhccCcccccccccccccccccCCCCCCccccchhhhccCcceeEEEEEcCCCCcHHH
Q 013007 1 MASVVLRNPNSKRIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTT 80 (451)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~viG~~~~GKST 80 (451)
||+.++++..++.+++.+...........+ ..+.. .......+....|++.+..+...++++||+++||+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~ni~iiGhvd~GKST 76 (447)
T PLN03127 1 MASVVLRNPNSKRLLPFSSQIYCACRGSAP--STSAS--ISAADDRQSPSPWWRSMATFTRTKPHVNVGTIGHVDHGKTT 76 (447)
T ss_pred CceeeecccCCceeeccccccchhhcccCC--cchhh--hccccccCCchhHHHHHhhhhcCCceEEEEEECcCCCCHHH
Confidence 788999999999999988776655443332 11111 11111111224455666778889999999999999999999
Q ss_pred HHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEe
Q 013007 81 LTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS 160 (451)
Q Consensus 81 Li~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvd 160 (451)
|+++|++...+.|+.....+..+|..++|+++|+|++.....|++++++++|+|||||.+|+.+|..++..+|++++|||
T Consensus 77 L~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVd 156 (447)
T PLN03127 77 LTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS 156 (447)
T ss_pred HHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEE
Confidence 99999877666676655444578999999999999999999999989999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccc
Q 013007 161 APDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIG 240 (451)
Q Consensus 161 a~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~ 240 (451)
+.+|+.+|+++|+.++..+++|++|+++||||+.++++.++.+++++.++++.++++++++|++++||+++.++.|....
T Consensus 157 a~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~ 236 (447)
T PLN03127 157 APDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIG 236 (447)
T ss_pred CCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccc
Confidence 99999999999999999999998788999999997666777777788899988888777899999999988888776666
Q ss_pred hhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecc
Q 013007 241 KKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK 320 (451)
Q Consensus 241 ~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~ 320 (451)
++++.+|+++|.+.+|.|.++.++||+|+|+++|+++|+|+|++|+|.+|.|++||.|++.|.+++++..++|++|+.++
T Consensus 237 ~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~ 316 (447)
T PLN03127 237 KNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFK 316 (447)
T ss_pred cchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEEC
Confidence 67899999999999998888889999999999999999999999999999999999999998654325689999999999
Q ss_pred eeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEE
Q 013007 321 KILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVE 400 (451)
Q Consensus 321 ~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~ 400 (451)
+++++|.|||+|+++|++++..++++||+|++++.++.+++|+|+|.+|+++++++.++|.+||++++|+++.+++|++.
T Consensus 317 ~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~ 396 (447)
T PLN03127 317 KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPGSIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVE 396 (447)
T ss_pred cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCCCCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEE
Confidence 99999999999999999999999999999999877778999999999999977677789999999999999999999998
Q ss_pred EeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 401 LLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 401 ~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
..+++.++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|.|+++++
T Consensus 397 ~~~~~~~l~~gd~a~v~l~~~~p~~le~g~RfilR~~g~Tvg~G~V~~v~~ 447 (447)
T PLN03127 397 LPEGVKMVMPGDNVTAVFELISPVPLEPGQRFALREGGRTVGAGVVSKVLS 447 (447)
T ss_pred eccCccccCCCCEEEEEEEECceEEEeeCCEEEEEeCCcEEEEEEEEEecC
Confidence 888899999999999999999999999999999999999999999999874
No 4
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-76 Score=559.98 Aligned_cols=381 Identities=39% Similarity=0.573 Sum_probs=349.8
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHH---------------HHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKV---------------LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~---------------~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
..++++|++++||+|||||||+++|+-. ..+.|+..+..+|.+|.+++||+||+|++.++..|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 4688999999999999999999999522 2356888899999999999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-------CCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-------PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DE 197 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-------~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~ 197 (451)
+.+.++|+|||||.||.++|+.++++||++||||||+.+ ..+||+||+.+++.+|+.++||++||||+++ ++
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde 162 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence 999999999999999999999999999999999999998 7899999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCC--cccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEe
Q 013007 198 ELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~--~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~ 275 (451)
+++++++.++..+++.+|+...+++|+|+||.+|.|... ...+|+..++|+++|+ .+..|.+..++||+++|+++|.
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccCcCCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeEEE
Confidence 899999999999999999988889999999988866532 2456788899999999 5777888899999999999999
Q ss_pred eCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 276 IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 276 ~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
+.+.|+|..|||++|.|++||+|++.|.+ ...+|+||++++++++.|.|||+|++++++++..|+++||++++++.
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~----~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAG----VVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred ecCCceEEEEEEeeeeeccCCEEEEecCc----ceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 99999999999999999999999999954 46899999999999999999999999999999999999999999886
Q ss_pred c-ccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeC
Q 013007 356 V-KTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELI 421 (451)
Q Consensus 356 ~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~ 421 (451)
+ ..+..|.|+|.+|.++ ..|.+||+|++|+|++.++|++..+ +++.+++.|+.+.|.+++.
T Consensus 318 ~~t~s~~f~a~i~vl~~p-----~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~ 392 (428)
T COG5256 318 PPTVSPEFTAQIIVLWHP-----GIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPE 392 (428)
T ss_pred CcccccceEEEEEEEecC-----ccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEec
Confidence 5 4457999999999985 7899999999999999999999432 3678999999999999999
Q ss_pred CeEeeec------CCeEEEeeCCcEEEEEEEEeecC
Q 013007 422 SPLPLQQ------GQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 422 ~p~~~~~------~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+|+|++. .+||+||+.|+|||+|+|.++.+
T Consensus 393 kP~~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~~ 428 (428)
T COG5256 393 KPLCLEKVSEIPQLGRFALRDMGQTIAAGKVLEVKK 428 (428)
T ss_pred CceEeeecccCCccceEEEEeCCCeEEeEEEEeccC
Confidence 9999985 37999999999999999998753
No 5
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=7.6e-74 Score=572.60 Aligned_cols=391 Identities=72% Similarity=1.164 Sum_probs=358.3
Q ss_pred hhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 57 ~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
..+.+.++++||+++||+|||||||+++|++...+.|+..+..++.+|..++|+++|+|++.....|+.++++++|||||
T Consensus 4 ~~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP 83 (394)
T PRK12736 4 EKFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP 83 (394)
T ss_pred hhhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC
Confidence 34667889999999999999999999999987766777666555578999999999999999999898888899999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||++|+.+++.++..+|++++|||+.+|+.+|+++|+.++..+++|++|+++||+|+.++++.++.+.+++.++++.+++
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999998888999999987667777778889999999988
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
.++.+|++++||++|.++.+.|+ .++++|+++|.+.+|.|.++.++||+|+|+++|+++|+|+|++|+|.+|+|++||
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~--~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd 241 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWE--DAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGD 241 (394)
T ss_pred CcCCccEEEeeccccccCCCcch--hhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCC
Confidence 76778999999999876665554 5789999999999998888889999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
.|+++|.+. +..++|++|+.+++++++|.|||+|+++|++++..++++||+||+++.++++++|+|++.+|+++++++
T Consensus 242 ~v~i~p~~~--~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~~~ 319 (394)
T PRK12736 242 EVEIVGIKE--TQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPGSIKPHTKFKAEVYILTKEEGGR 319 (394)
T ss_pred EEEEecCCC--CeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEecCCCCCcceEEEEEEEEEecccCCC
Confidence 999998532 457999999999999999999999999999998899999999999877777899999999999876666
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+++|.+||++++|+++.++.|+|...++++++++|+.+.|+|+|.+|+|+++++||+||++++|+|+|+|+++++
T Consensus 320 ~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T PRK12736 320 HTPFFNNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAIREGGRTVGAGTVTEILD 394 (394)
T ss_pred CCcccCCceEEEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEeeC
Confidence 789999999999999999999998887888999999999999999999999999999999999999999999875
No 6
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.9e-73 Score=567.79 Aligned_cols=393 Identities=74% Similarity=1.174 Sum_probs=357.0
Q ss_pred hhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 57 ~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
+.+.+++++++|+++||+|||||||+++|++...+.|...+...+.+|..++|+++|+|++.....+++++.+++|+|||
T Consensus 4 ~~~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP 83 (396)
T ss_pred hhcCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence 45677889999999999999999999999987777777666555678999999999999999998898888899999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||++|.+++..++..+|++++|+|+.+|+..|+++|+.++...++|++|+++||||+.++++.++.+++++.++++.+++
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~ 163 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999997777899999987666777788889999999988
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
.++++|++++||++|++....+.+..++.+|+++|.+.+|.|.++.++||+|+|+++|+++|+|+|++|+|.+|+|++||
T Consensus 164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd 243 (396)
T PRK12735 164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGD 243 (396)
T ss_pred CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCC
Confidence 76679999999999877543333235789999999999988888889999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
+|+++|.+. +..++|++|+.+++++++|.|||+|+++|++++..++++|++||+++++++++.|+|+|.+|+++++++
T Consensus 244 ~v~i~p~~~--~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~~~~ 321 (396)
T PRK12735 244 EVEIVGIKE--TQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPGSIKPHTKFEAEVYVLSKEEGGR 321 (396)
T ss_pred EEEEecCCC--CeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCCCCCcceEEEEEEEEEecccCCC
Confidence 999998542 467999999999999999999999999999999899999999999877778899999999999876555
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+++|++||++++|+++.++.|++...+++.++++|+.+.|+|+|.+|+|+++++||+||++|+|+|+|+|+++++
T Consensus 322 ~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 396 (396)
T PRK12735 322 HTPFFNGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAIREGGRTVGAGVVAKIIE 396 (396)
T ss_pred CCcccCCCeeEEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEEEcCCcEEEEEEEEEecC
Confidence 688999999999999999999998877888999999999999999999999999999999899999999999874
No 7
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=4.9e-73 Score=567.68 Aligned_cols=391 Identities=76% Similarity=1.167 Sum_probs=357.8
Q ss_pred hhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 57 ~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
..+..++++++|+++||+|||||||+++|++...+.|+..+..++.+|..++|+++|+|++.....++..+++++|||||
T Consensus 4 ~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtp 83 (394)
T TIGR00485 4 EKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (394)
T ss_pred hhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECC
Confidence 34666889999999999999999999999988777788777666779999999999999999999998888899999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||++|..++..++..+|++++|+|+.+|+..||++|+.++..+++|++|+++||||+.++++.++.++++++++++.+++
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998878999999987666777777889999999988
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
.+.++|++++||++|.++.+.|+ .++.+|+++|.+.+|.|.++.++||+|+|+++|+++|+|+|++|+|.+|.|++||
T Consensus 164 ~~~~~~ii~vSa~~g~~g~~~~~--~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd 241 (394)
T TIGR00485 164 PGDDTPIIRGSALKALEGDAEWE--AKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGE 241 (394)
T ss_pred CccCccEEECccccccccCCchh--HhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCC
Confidence 76679999999999876665544 4688999999998888888889999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
+|.+.|... +..++|++|+.+++++++|.|||+|+++|++++..++++||+|++++.+++++.|+|+|.+|++++|++
T Consensus 242 ~v~i~p~~~--~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~~~~~~~~f~a~i~vl~~~~g~~ 319 (394)
T TIGR00485 242 EVEIVGLKD--TRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPGSIKPHTKFEAEVYVLKKEEGGR 319 (394)
T ss_pred EEEEecCCC--CcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCCCCCcceEEEEEEEEEecCCCCC
Confidence 999988432 357899999999999999999999999999998889999999999877777899999999999877777
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+++|++||++++|+++.++.|++..++++.++++|+.+.|+|+|.+|+|+++++||+||++++|+|+|.|+++++
T Consensus 320 ~~~i~~g~~~~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfilR~~g~tv~~G~V~~v~~ 394 (394)
T TIGR00485 320 HTPFFSGYRPQFYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAIREGGRTVGAGVVSKIIE 394 (394)
T ss_pred CCccccCceEEEEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEEecCCcEEEEEEEEEecC
Confidence 789999999999999999999999888899999999999999999999999999999999999999999999874
No 8
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=6.3e-73 Score=572.45 Aligned_cols=390 Identities=68% Similarity=1.083 Sum_probs=348.5
Q ss_pred hhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 58 ~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
.+..+++++||+++||+|+|||||+++|+......+.........+|..++|+++|+|++.....|++++.+++||||||
T Consensus 74 ~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPG 153 (478)
T PLN03126 74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 153 (478)
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCC
Confidence 34457889999999999999999999998654433222222234579999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|++|.++|+.++..+|++++|||+.+|+.+||++|+.++..+++|++|+++||||+.+.++.++.+++++.++++.++++
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~ 233 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP 233 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999988899999999987777888888999999999987
Q ss_pred CCCCCeeeccccccccC----------CCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEE
Q 013007 218 GDEIPIIRGSATSALQG----------KNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRV 287 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~----------~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v 287 (451)
+.++|++++||++|++. .+.|+ .++.+|+++|.++.|.|.++.++||+|+|+++|+++|+|+|++|+|
T Consensus 234 ~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy--~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V 311 (478)
T PLN03126 234 GDDIPIISGSALLALEALMENPNIKRGDNKWV--DKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRV 311 (478)
T ss_pred cCcceEEEEEccccccccccccccccCCCchh--hhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEE
Confidence 77899999999988543 12222 3588999999998777788889999999999999999999999999
Q ss_pred EeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEE
Q 013007 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIY 367 (451)
Q Consensus 288 ~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~ 367 (451)
.+|.|++||.|.++|.+. +..++|++|+.+++++++|.|||+|+++|++++..++++||+|++++.++++++|+|++.
T Consensus 312 ~sG~i~~Gd~v~i~p~~~--~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~~~~~~~F~A~i~ 389 (478)
T PLN03126 312 ERGTVKVGETVDIVGLRE--TRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGSITPHTKFEAIVY 389 (478)
T ss_pred EcCeEecCCEEEEecCCC--ceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCccEEecCCCCCceEEEEEEEE
Confidence 999999999999998542 467899999999999999999999999999999999999999999877777899999999
Q ss_pred EeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----CccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEE
Q 013007 368 VLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----DVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVG 442 (451)
Q Consensus 368 ~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig 442 (451)
||++++++++++|.+||++++|+++.+++|+|..+. +++++++||.+.|+|+|.+|+|+++++||+||++++|+|
T Consensus 390 vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~~~Tva 469 (478)
T PLN03126 390 VLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVG 469 (478)
T ss_pred EecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEEecCCceEE
Confidence 999876566689999999999999999999999874 467899999999999999999999999999999999999
Q ss_pred EEEEEeecC
Q 013007 443 AGVVSKVIS 451 (451)
Q Consensus 443 ~G~I~~~~~ 451 (451)
+|+|+++++
T Consensus 470 ~G~V~~v~~ 478 (478)
T PLN03126 470 AGVIQSIIE 478 (478)
T ss_pred EEEEEEecC
Confidence 999999874
No 9
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=3e-72 Score=560.96 Aligned_cols=393 Identities=75% Similarity=1.178 Sum_probs=354.2
Q ss_pred hhhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 57 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 57 ~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
+.+.+.++++||+++||+|||||||+++|++...+.|......++.+|..++|+++|+|++.....|++++.+++|+|||
T Consensus 4 ~~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 4 EKFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCP 83 (396)
T ss_pred hhccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECC
Confidence 34666789999999999999999999999987777776655555578999999999999999998898888999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||.+|..++..++..+|++++|||+.+|+..|+++|+.++..+++|.+|+++||+|+.+.++.++.+.+++.++++.+++
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999997667899999987666777788889999999988
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
+++++|++++||+++++......+..++.+|+++|.+.+|.|.+..++||+|+|+++|+++|+|+|++|+|.+|++++||
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd 243 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGE 243 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCC
Confidence 76789999999998865322111124789999999998888888889999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCc
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGR 376 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~ 376 (451)
++.++|... +..++|++|+.+++++++|.|||+|+++|++++..++++|++||+++++++++.|+|+|.+|+++.+++
T Consensus 244 ~v~i~p~~~--~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~vl~~~~~g~ 321 (396)
T PRK00049 244 EVEIVGIRD--TQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPGSITPHTKFEAEVYVLSKEEGGR 321 (396)
T ss_pred EEEEeecCC--CceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCCCCCcceEEEEEEEEEecCcCCC
Confidence 999988532 467999999999999999999999999999998899999999999877777899999999999876666
Q ss_pred ccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 377 HTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 377 ~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+++|++||++++|+++.+++|++...++++++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|+|+++++
T Consensus 322 ~~~i~~g~~~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~g~t~~~G~V~~v~~ 396 (396)
T PRK00049 322 HTPFFNGYRPQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAIREGGRTVGAGVVTKIIE 396 (396)
T ss_pred CCcccCCCEEEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEEecCCcEEEEEEEEEecC
Confidence 789999999999999999999997767889999999999999999999999999999999999999999999874
No 10
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=2.8e-70 Score=549.50 Aligned_cols=391 Identities=70% Similarity=1.112 Sum_probs=347.0
Q ss_pred hhccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 58 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 58 ~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
.+..++++++|+++||+|||||||+++|++............+..+|..++|+++|+|++.....|++++.+++|+||||
T Consensus 5 ~~~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 5 KFERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred hccCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 35667899999999999999999999999764332222222223679999999999999999888988889999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|.+|.+++.+++..+|++++|||+..|+..|+++|+.++..+++|++|+++||+|+.+.++.++.+++++.++++.++++
T Consensus 85 h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~ 164 (409)
T CHL00071 85 HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP 164 (409)
T ss_pred hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988899999999986777888888999999999887
Q ss_pred CCCCCeeeccccccccCCCcc-------cch-hhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEe
Q 013007 218 GDEIPIIRGSATSALQGKNEE-------IGK-KAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQ 289 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~-------~~~-~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~s 289 (451)
++.+|++++||++|++..... ..| .++.+|+++|.+.+|.|.++.+.||+|+|+++|+++|+|+|++|+|.+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~s 244 (409)
T CHL00071 165 GDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIER 244 (409)
T ss_pred CCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEec
Confidence 667999999999986542111 123 368999999999888888888999999999999999999999999999
Q ss_pred eeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEe
Q 013007 290 GTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVL 369 (451)
Q Consensus 290 G~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l 369 (451)
|++++||.|.+.|... ...++|++|+.+++++++|.|||+|+++|++++..++++||+|++++.++++++|+|+|.+|
T Consensus 245 G~l~~Gd~v~i~p~~~--~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l 322 (409)
T CHL00071 245 GTVKVGDTVEIVGLRE--TKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPGTITPHTKFEAQVYIL 322 (409)
T ss_pred CEEeeCCEEEEeeCCC--CcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCCCCCcceEEEEEEEEE
Confidence 9999999999887432 35689999999999999999999999999999889999999999987777899999999999
Q ss_pred ecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----CccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCCcEEEEE
Q 013007 370 TKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----DVKMVMPGDNVNAAFELISPLPLQQGQRFALREGGRTVGAG 444 (451)
Q Consensus 370 ~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~~tig~G 444 (451)
+++.+++..+|.+||++++|+++.++.|+|..+. +++++++||.+.|+|+|.+|+|+++++||+||++|+|+|+|
T Consensus 323 ~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~~~tig~G 402 (409)
T CHL00071 323 TKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREGGRTVGAG 402 (409)
T ss_pred ecccCCccccccCCceEEEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecCCeEEEEE
Confidence 9865445678999999999999999999999884 37799999999999999999999999999999999999999
Q ss_pred EEEeec
Q 013007 445 VVSKVI 450 (451)
Q Consensus 445 ~I~~~~ 450 (451)
.|++++
T Consensus 403 ~V~~~~ 408 (409)
T CHL00071 403 VVSKIL 408 (409)
T ss_pred EEEEec
Confidence 999986
No 11
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=2.5e-70 Score=551.91 Aligned_cols=380 Identities=32% Similarity=0.483 Sum_probs=337.2
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHH---------------hcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
.+++++||+++||+|+|||||+++|+.... +.|+..+.+.+.+|..++|++||+|++.+...|++
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 468899999999999999999999974321 22344555677899999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-------ccHHHHHHHHHHcCCCeEEEEEeeccCCC---
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVE--- 195 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~~t~~~l~~~~~~~ip~iivviNK~D~~~--- 195 (451)
.++.++|+|||||++|.++|..+++.+|++|+|||+.+|.. .||++|+.++..+++|++|+++||||+.+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 99999999999999999999999999999999999998743 79999999999999998989999999873
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCC--cccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEE
Q 013007 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~--~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~ 273 (451)
.+++++++.+++.++++..|+..+++|++|+||++|.+..+ ....|+..+.|+++|.+ ++.|.+..+.||+|+|+++
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~~~~~~plr~~I~~v 241 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPKRPSDKPLRLPLQDV 241 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCccccCCCcEEEEEEE
Confidence 25678888899999999999877789999999998866532 12356667889999987 5667788899999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecC
Q 013007 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKP 353 (451)
Q Consensus 274 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 353 (451)
|+++|+|+|+.|+|++|.|++||+|.++|.+ ..++|++|+.++.++++|.|||+|++.|++++..++++||+|+++
T Consensus 242 ~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~----~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~ 317 (447)
T PLN00043 242 YKIGGIGTVPVGRVETGVIKPGMVVTFGPTG----LTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNS 317 (447)
T ss_pred EEeCCcEEEEEEEEECCEEeeCCEEEEcCCC----CEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccC
Confidence 9999999999999999999999999999854 479999999999999999999999999999988999999999987
Q ss_pred C-C-cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEE
Q 013007 354 G-S-VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAF 418 (451)
Q Consensus 354 ~-~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~ 418 (451)
. . +..+++|+|+|+||+++ .+|.+||++++|+++.+++|+|..+ ++|++|++||.+.|+|
T Consensus 318 ~~~p~~~~~~F~A~i~~l~~~-----~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i 392 (447)
T PLN00043 318 KDDPAKEAANFTSQVIIMNHP-----GQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKM 392 (447)
T ss_pred CCCCCccccEEEEEEEEECCC-----CCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEE
Confidence 3 3 46789999999999974 6899999999999999999998654 2468999999999999
Q ss_pred EeCCeEeeec------CCeEEEeeCCcEEEEEEEEeec
Q 013007 419 ELISPLPLQQ------GQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 419 ~~~~p~~~~~------~~rfvlr~~~~tig~G~I~~~~ 450 (451)
++.+|+|+++ ++||+||++|.|||+|+|+++.
T Consensus 393 ~~~~pi~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~ 430 (447)
T PLN00043 393 IPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVE 430 (447)
T ss_pred EECCcEEEEecccCCCCceEEEEECCCeEEEEEEEEEe
Confidence 9999999997 5899999999999999999874
No 12
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=2.1e-69 Score=545.66 Aligned_cols=380 Identities=33% Similarity=0.484 Sum_probs=338.0
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
.+++++||+++||+|+|||||+++|+... .+.|++.+.+.+.+|..++|++||+|++.+...+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 46788999999999999999999997532 123555666677899999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-------CccHHHHHHHHHHcCCCeEEEEEeeccCC--C-
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLV--E- 195 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~~t~~~l~~~~~~~ip~iivviNK~D~~--~- 195 (451)
+++.++|+|||||.+|.++|+.+++.+|++++|||+.+|+ ..||++|+.++..+|+|++|+++||||.. +
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchh
Confidence 9999999999999999999999999999999999999997 48999999999999999998999999943 3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCC--cccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEE
Q 013007 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~--~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~ 273 (451)
+++.++++.+++.++++.+++..+++|++|+||++|.+..+ ....|+..++|+++|... +.|.+..++||+|+|+++
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~-~~~~~~~~~p~r~~I~~v 241 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL-EPPKRPVDKPLRLPLQDV 241 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC-CCCCcCCCCCeEEEEEEE
Confidence 45778889999999999999877789999999998865432 234566678899998764 557777899999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecC
Q 013007 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKP 353 (451)
Q Consensus 274 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 353 (451)
|+++|.|+|++|+|.+|.|++||+|.++|.+ ..++|++|+.+++++++|.|||+|+++|++++..++++||+|+++
T Consensus 242 ~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~----~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~ 317 (446)
T PTZ00141 242 YKIGGIGTVPVGRVETGILKPGMVVTFAPSG----VTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDS 317 (446)
T ss_pred EecCCceEEEEEEEEcceEecCCEEEEccCC----cEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecC
Confidence 9999999999999999999999999999853 469999999999999999999999999999988999999999987
Q ss_pred C--CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEE
Q 013007 354 G--SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAF 418 (451)
Q Consensus 354 ~--~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~ 418 (451)
+ ++..+++|+|+|.||+++ .+|++||++++|+++.++.|+|..+ ++|++|++|+.+.|+|
T Consensus 318 ~~~p~~~~~~f~a~i~~l~~~-----~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l 392 (446)
T PTZ00141 318 KNDPAKECADFTAQVIVLNHP-----GQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKM 392 (446)
T ss_pred CCCCCccceEEEEEEEEECCC-----CccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEE
Confidence 4 345689999999999974 6899999999999999999999876 2467999999999999
Q ss_pred EeCCeEeeec------CCeEEEeeCCcEEEEEEEEeec
Q 013007 419 ELISPLPLQQ------GQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 419 ~~~~p~~~~~------~~rfvlr~~~~tig~G~I~~~~ 450 (451)
++.+|+|+++ ++||+||++|+|+|+|.|+++.
T Consensus 393 ~~~~pi~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~ 430 (446)
T PTZ00141 393 VPTKPMCVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVE 430 (446)
T ss_pred EECCceEEeecccCCCCccEEEEECCCEEEEEEEEEEe
Confidence 9999999995 5899999999999999999875
No 13
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=5e-67 Score=530.43 Aligned_cols=380 Identities=39% Similarity=0.624 Sum_probs=338.3
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
.+++++||+++||+|+|||||+++|+... .+.|+..+.+.+.+|..++|+++|+|++.....+++
T Consensus 2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~ 81 (425)
T PRK12317 2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET 81 (425)
T ss_pred CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence 36789999999999999999999997432 123666666778899999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCC--CCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD--GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLEL 202 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~--g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~ 202 (451)
++..++|||||||++|.+++..++..+|++++|+|+++ +...++++++.++..++++++++++||+|+.+ +++.++.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 161 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE 161 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999877889999999986 3456667
Q ss_pred HHHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCc
Q 013007 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRG 280 (451)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G 280 (451)
+.+++.++++.+++..+..+++++||++|.+.++. ..+|+....|+++|.. +|+|.+..++||+|+|+++|.++|.|
T Consensus 162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~-~~~~~~~~~~p~r~~i~~~~~~~g~G 240 (425)
T PRK12317 162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDN-LKPPEKPTDKPLRIPIQDVYSISGVG 240 (425)
T ss_pred HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhc-CCCCccccCCCcEEEEEEEEeeCCCe
Confidence 77888899988888656689999999988655432 3456777889999876 67777788999999999999999999
Q ss_pred eEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-cccc
Q 013007 281 TVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VKTY 359 (451)
Q Consensus 281 ~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~ 359 (451)
+|++|+|.+|+|++||+|.++|.+ ..++|++|+.+++++++|.|||+|+++|++++..++++||+|++++. ++.+
T Consensus 241 ~vv~G~v~~G~v~~Gd~v~i~P~~----~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~~~~~~ 316 (425)
T PRK12317 241 TVPVGRVETGVLKVGDKVVFMPAG----VVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDNPPTVA 316 (425)
T ss_pred EEEEEEEeeccEecCCEEEECCCC----CeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCCCCCCcc
Confidence 999999999999999999999954 46999999999999999999999999999998899999999998874 5668
Q ss_pred cEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeCCeEee
Q 013007 360 KKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELISPLPL 426 (451)
Q Consensus 360 ~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~~~ 426 (451)
++|+|+|.||+++ .+|++||++++|+++.+++|+|..+ +++++|++||.+.|+|+|.+|+|+
T Consensus 317 ~~f~a~v~~l~~~-----~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~ 391 (425)
T PRK12317 317 EEFTAQIVVLQHP-----SAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVI 391 (425)
T ss_pred cEEEEEEEEECCC-----CcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEE
Confidence 9999999999874 6899999999999999999999866 247799999999999999999999
Q ss_pred ecC------CeEEEeeCCcEEEEEEEEeec
Q 013007 427 QQG------QRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 427 ~~~------~rfvlr~~~~tig~G~I~~~~ 450 (451)
+++ +||+||++|+|+|+|+|+++.
T Consensus 392 ~~~~~~~~lgrfilr~~g~tv~~G~i~~v~ 421 (425)
T PRK12317 392 EKVKEIPQLGRFAIRDMGQTIAAGMVIDVK 421 (425)
T ss_pred EeCCcCCCCccEEEEECCCeEEEEEEEEec
Confidence 997 899999999999999999875
No 14
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.1e-66 Score=525.75 Aligned_cols=380 Identities=38% Similarity=0.595 Sum_probs=336.9
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCccceeeeeccCCchhhhhcCceEEeeEEEeee
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~ 125 (451)
.+++++||+++||+|+|||||+++|+... ...|+..+.+.+.+|..++|+++|+|++.....+.+
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 46788999999999999999999997521 134555666778899999999999999999999999
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC---CCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG---PMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLE 201 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g---~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~ 201 (451)
++..++|||||||++|.+++..++..+|++++|+|++++ ...|+.+|+.++..++++++|+++||+|+.+ +++.++
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence 999999999999999999999999999999999999998 7889999999888888887989999999985 455677
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCC
Q 013007 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGR 279 (451)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~ 279 (451)
.+++++.++++.+++.....+++++||++|.+..+. ..+|+...+|+++|.. +++|.+..++||+|+|+++|+++|+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~-~~~~~~~~~~p~r~~i~~v~~~~g~ 241 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDA-LEPPEKPTDKPLRIPIQDVYSITGV 241 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhc-CCCCCCccCCCcEEEEEEEEecCCC
Confidence 778889999998888666789999999998655332 2345556789999976 5667777889999999999999999
Q ss_pred ceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-ccc
Q 013007 280 GTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VKT 358 (451)
Q Consensus 280 G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 358 (451)
|+|++|+|.+|.|++||.|.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++++||+|++++. ++.
T Consensus 242 G~vv~G~v~~G~i~~gd~v~i~P~~----~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~~~~ 317 (426)
T TIGR00483 242 GTVPVGRVETGVLKPGDKVVFEPAG----VSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNPPKV 317 (426)
T ss_pred eEEEEEEEccceeecCCEEEECCCC----cEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCCCce
Confidence 9999999999999999999999854 46999999999999999999999999999998899999999998864 567
Q ss_pred ccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeCCeEe
Q 013007 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELISPLP 425 (451)
Q Consensus 359 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~~ 425 (451)
+++|+|++.||+++ .+|++||++++|+++.++.|+|..+ ++|++|++||.+.|+|++.+|+|
T Consensus 318 ~~~f~a~v~~l~~~-----~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~ 392 (426)
T TIGR00483 318 AKEFTAQIVVLQHP-----GAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMV 392 (426)
T ss_pred eeEEEEEEEEECCC-----CccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeE
Confidence 89999999999974 6899999999999999999999765 25789999999999999999999
Q ss_pred eec------CCeEEEeeCCcEEEEEEEEeec
Q 013007 426 LQQ------GQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 426 ~~~------~~rfvlr~~~~tig~G~I~~~~ 450 (451)
+++ ++||+||++|+|||+|+|+++.
T Consensus 393 ~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~ 423 (426)
T TIGR00483 393 IEAVKEIPPLGRFAIRDMGQTVAAGMIIDVD 423 (426)
T ss_pred EeecccCCCCccEEEEECCCEEEEEEEEEee
Confidence 997 6899999999999999999874
No 15
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=3.3e-61 Score=482.88 Aligned_cols=366 Identities=27% Similarity=0.374 Sum_probs=317.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH---------------HhcCcc--ceeeeeccCCchhhhhcCceEEeeEEEeeeCCe
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKA--KAIAFDEIDKAPEEKKRGITIATAHVEYETAKR 128 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~---------------~~~g~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~ 128 (451)
++|+++||+|||||||+++|+... ...|.. ++.+.|.+|..++|++||+|++.....+++++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999996432 113443 577788999999999999999999999999999
Q ss_pred eEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHHHHHH
Q 013007 129 HYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMEL 207 (451)
Q Consensus 129 ~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~~~~~ 207 (451)
+++|||||||++|.++|..++..+|++++|||+.+|+.+||++|+.++..++++++|+++||||+.+ +++.++.+++++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~ 160 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDY 160 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988989999999986 455677778888
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEE
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATG 285 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g 285 (451)
..+++.+++ .++|++|+||++|.+..+. ...|+....|+++|.. ++.|.+..++||+|+|+++|+....+.-++|
T Consensus 161 ~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~-~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G 237 (406)
T TIGR02034 161 LAFAEQLGF--RDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILET-VEVERDAQDLPLRFPVQYVNRPNLDFRGYAG 237 (406)
T ss_pred HHHHHHcCC--CCccEEEeecccCCCCcccccCCCccchhHHHHHHHh-cCCCCCcCCCCcccceEEEeecCCCcEEEEE
Confidence 888888877 4689999999998655432 2356667788888876 4666677889999999999875443333789
Q ss_pred EEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-cccccEEEE
Q 013007 286 RVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VKTYKKFEA 364 (451)
Q Consensus 286 ~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~~~f~a 364 (451)
+|.+|+|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++ ..++++||+|++++. ++.++.|+|
T Consensus 238 ~v~~G~l~~gd~v~i~P~~----~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~~~~~f~a 311 (406)
T TIGR02034 238 TIASGSVHVGDEVVVLPSG----RSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPEVADQFAA 311 (406)
T ss_pred EEecceeecCCEEEEeCCC----cEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCCcceEEEE
Confidence 9999999999999999953 579999999999999999999999999984 468999999999876 567899999
Q ss_pred EEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----------CccccCCCCEEEEEEEeCCeEeeecC----
Q 013007 365 EIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----------DVKMVMPGDNVNAAFELISPLPLQQG---- 429 (451)
Q Consensus 365 ~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~~~~---- 429 (451)
++.+|++ .+|++||++++|+|+.++.|+|..+. +++.+++|+.+.|+|++.+|+|++++
T Consensus 312 ~i~~l~~------~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~~~~ 385 (406)
T TIGR02034 312 TLVWMAE------EPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYAENR 385 (406)
T ss_pred EEEEeCh------hhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCcccCCC
Confidence 9999985 47999999999999999999998762 35789999999999999999999986
Q ss_pred --CeEEE--eeCCcEEEEEEE
Q 013007 430 --QRFAL--REGGRTVGAGVV 446 (451)
Q Consensus 430 --~rfvl--r~~~~tig~G~I 446 (451)
+||+| |++++|||+|+|
T Consensus 386 ~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 386 TTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cceeEEEEECCCCCeEEEEeC
Confidence 59999 677999999986
No 16
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=3.6e-61 Score=489.30 Aligned_cols=378 Identities=24% Similarity=0.326 Sum_probs=322.2
Q ss_pred hccCcceeEEEEEcCCCCcHHHHHHHHHHHHH---------------hcCcc--ceeeeeccCCchhhhhcCceEEeeEE
Q 013007 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGKA--KAIAFDEIDKAPEEKKRGITIATAHV 121 (451)
Q Consensus 59 ~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~~--~~~~~~~~d~~~~e~~~g~t~~~~~~ 121 (451)
+++.++.++|+++||+|+|||||+++|+.... ..|+. .+.+.|.+|..++|++||+|++....
T Consensus 21 ~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~ 100 (474)
T PRK05124 21 AQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYR 100 (474)
T ss_pred hccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEE
Confidence 44567889999999999999999999974321 13442 45567789999999999999999999
Q ss_pred EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHH
Q 013007 122 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELL 200 (451)
Q Consensus 122 ~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~ 200 (451)
.+++++.+++|||||||++|.+++..++..+|++++|||+.+|+..||++|+.++..++++++|+++||||+.+ +++.+
T Consensus 101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~ 180 (474)
T PRK05124 101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVF 180 (474)
T ss_pred EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888889999999985 45567
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCC
Q 013007 201 ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQG 278 (451)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~ 278 (451)
+.+++++..+++.+++. ...+++|+||++|.+.... ..+|+....|+++|.. ++.|.+..+.||+|+|+++++..+
T Consensus 181 ~~i~~~l~~~~~~~~~~-~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~-i~~~~~~~~~p~r~~I~~v~~~~~ 258 (474)
T PRK05124 181 ERIREDYLTFAEQLPGN-LDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLET-VDIQRVVDAQPFRFPVQYVNRPNL 258 (474)
T ss_pred HHHHHHHHHHHHhcCCC-CCceEEEEEeecCCCcccccccccccchhhHHHHHhh-cCCCCCCCCCCceeeEEEEEecCC
Confidence 77777888888777642 3689999999998665432 2345666788887764 566677788999999999987543
Q ss_pred CceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-cc
Q 013007 279 RGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VK 357 (451)
Q Consensus 279 ~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~ 357 (451)
....+.|+|.+|+|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++ ..++++||+||+++. ++
T Consensus 259 ~~~g~~G~V~sG~l~~Gd~v~i~P~~----~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~~~~~~ 332 (474)
T PRK05124 259 DFRGYAGTLASGVVKVGDRVKVLPSG----KESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAADEALQ 332 (474)
T ss_pred cccceEEEEEeEEEecCCEEEEecCC----ceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECCCCCCc
Confidence 22237899999999999999999954 469999999999999999999999999985 468999999999875 56
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----------CccccCCCCEEEEEEEeCCeEee
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----------DVKMVMPGDNVNAAFELISPLPL 426 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~ 426 (451)
.+++|+|++.||+. .+|++||++++|+++.+++|+|..+. ++.+|++|+.+.|+|++.+|+|+
T Consensus 333 ~~~~f~a~i~~l~~------~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~ 406 (474)
T PRK05124 333 AVQHASADVVWMAE------QPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVL 406 (474)
T ss_pred cceEEEEEEEEeCC------cccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeecc
Confidence 78999999999973 57999999999999999999998773 36789999999999999999999
Q ss_pred ecC------CeEEE--eeCCcEEEEEEEEeec
Q 013007 427 QQG------QRFAL--REGGRTVGAGVVSKVI 450 (451)
Q Consensus 427 ~~~------~rfvl--r~~~~tig~G~I~~~~ 450 (451)
+++ +||+| |++++|||+|+|++..
T Consensus 407 e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 407 DPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred ccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 987 57999 5678999999998754
No 17
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.6e-61 Score=483.33 Aligned_cols=354 Identities=31% Similarity=0.458 Sum_probs=303.6
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee---------------e
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE---------------T 125 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---------------~ 125 (451)
.++++++|+++||+|||||||+++|++. ..|.+++|.+||+|++..+..+. .
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~ 96 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSY 96 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCccccccc
Confidence 4678899999999999999999999954 35788999999999998665331 1
Q ss_pred C------------------CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-CCccHHHHHHHHHHcCCCeEEE
Q 013007 126 A------------------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVC 186 (451)
Q Consensus 126 ~------------------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-~~~~t~~~l~~~~~~~ip~iiv 186 (451)
. .+.++|+|||||++|.++|..+++.+|++++||||.++ +.+||++|+.++..++++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIV 176 (460)
T PTZ00327 97 GSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIII 176 (460)
T ss_pred CCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEE
Confidence 0 24789999999999999999999999999999999986 7999999999999999998999
Q ss_pred EEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCe
Q 013007 187 FLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPF 266 (451)
Q Consensus 187 viNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~ 266 (451)
|+||||+.+.+ ..++..+++.++++.+.. ...|++|+||++| .|+++|+++|.+.+|.|.++.+.||
T Consensus 177 vlNKiDlv~~~-~~~~~~~ei~~~l~~~~~--~~~~iipVSA~~G----------~nI~~Ll~~L~~~lp~~~r~~~~p~ 243 (460)
T PTZ00327 177 LQNKIDLVKEA-QAQDQYEEIRNFVKGTIA--DNAPIIPISAQLK----------YNIDVVLEYICTQIPIPKRDLTSPP 243 (460)
T ss_pred EEecccccCHH-HHHHHHHHHHHHHHhhcc--CCCeEEEeeCCCC----------CCHHHHHHHHHhhCCCCCCCCCCCc
Confidence 99999998643 344455677777766432 5689999999999 8999999999988998888889999
Q ss_pred eEEEEEEEeeCC--------CceEEEEEEEeeeeecCCEEEEecccC-----CCC----ceeEEEEEeecceeccEEecC
Q 013007 267 LMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ-----GPS----LKTTVTGVEMFKKILDRGEAG 329 (451)
Q Consensus 267 ~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~-----~~~----~~~~V~~I~~~~~~v~~a~aG 329 (451)
+|+|+++|.+.+ +|+|++|+|.+|++++||+|.+.|.+. +++ ..++|++|+.++.++++|.||
T Consensus 244 r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~~~~~v~~a~aG 323 (460)
T PTZ00327 244 RMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFAENNELQYAVPG 323 (460)
T ss_pred EEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEECCeECCEEcCC
Confidence 999999998864 799999999999999999999999531 111 468999999999999999999
Q ss_pred CeEEEEec---cccccCCCCCeEEecCCCc-ccccEEEEEEEEeecC-----CCCc----ccccccCceeEEEEEeeeee
Q 013007 330 DNVGLLLR---GLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKD-----EGGR----HTAFFSNYRPQIYLRTADVT 396 (451)
Q Consensus 330 ~~v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~-----~~~~----~~~i~~g~~~~~~~~~~~~~ 396 (451)
|+|+++++ +++..++.+||+|++++.+ +.++.|+|++.||++. ++++ ..+|++||++++|+++.++.
T Consensus 324 ~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~~~~~~~~~~~~~l~~g~~~~l~~gt~~~~ 403 (460)
T PTZ00327 324 GLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTG 403 (460)
T ss_pred CEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccccccccccccccCCcccCCCCEEEEEecccEEE
Confidence 99999987 6777899999999998754 4567999999999873 1122 26899999999999999999
Q ss_pred eeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEee---C-CcEEEEEEEEe
Q 013007 397 GKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALRE---G-GRTVGAGVVSK 448 (451)
Q Consensus 397 ~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~---~-~~tig~G~I~~ 448 (451)
|+|..+++.. .++|+|.+|+|+++|+||+||+ . ++|||+|.|.+
T Consensus 404 ~~i~~i~~~~--------~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 404 GRVVGIKDDG--------IAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred EEEEEeCCCe--------EEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence 9999885321 7889999999999999999985 3 68999999874
No 18
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-61 Score=476.18 Aligned_cols=379 Identities=28% Similarity=0.407 Sum_probs=344.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH---------------HHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV---------------LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~---------------~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 127 (451)
+.+++.+++||+|+|||||+++|+.. ....|+..+.++|.+|.+.+||+||+|++.....|+...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 57899999999999999999999632 235688899999999999999999999999999999999
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-------CccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHH
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEEL 199 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~ 199 (451)
+.++|+|+|||.+|+.+|+.++.+||+++||||++.+. .+||+||+.+++.+|+.++||++||||+++ ++++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~R 334 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQDR 334 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccHHH
Confidence 99999999999999999999999999999999999764 389999999999999999999999999999 7889
Q ss_pred HHHHHHHHHHHH-HhcCCCCCCCCeeeccccccccCCC-----cccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEE
Q 013007 200 LELVEMELRELL-SFYKFPGDEIPIIRGSATSALQGKN-----EEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (451)
Q Consensus 200 ~~~~~~~~~~~l-~~~~~~~~~~pvi~~Sa~~g~~~~~-----~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~ 273 (451)
+++++..+..|| +.+||...++.|+|+|+++|.+... .-..||..+.||+.|+. +..|.+..+.||++.|.++
T Consensus 335 F~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ltIsdi 413 (603)
T KOG0458|consen 335 FEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLTISDI 413 (603)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEEhhhe
Confidence 999999999999 8889988888999999999876532 33458888999999998 6667888999999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEe-c
Q 013007 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA-K 352 (451)
Q Consensus 274 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~-~ 352 (451)
+..++.|..++|+|++|.|++||+|+++++. ..+.|++|.++..+..+|.|||.|.+.|.++..+.++.|++++ .
T Consensus 414 ~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~----e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i~~~~ 489 (603)
T KOG0458|consen 414 YPLPSSGVSISGKIESGYIQPGQKLYIMTSR----EDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDIADSG 489 (603)
T ss_pred eecCCCeeEEEEEEeccccccCCEEEEecCc----ceEEEEeeecCCCcceeEeeCCEEEEecCccChhhcccceeeecC
Confidence 9999999999999999999999999999865 4699999999999999999999999999999999999999999 5
Q ss_pred CCCc-ccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEE
Q 013007 353 PGSV-KTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAF 418 (451)
Q Consensus 353 ~~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~ 418 (451)
++.+ +.+..|.+++.||+-. .||..|.+..+|+|+..++|++..+ +.+++|..|+.+.+++
T Consensus 490 ~~~~i~~~~~f~~~~~~f~~~-----~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~vel 564 (603)
T KOG0458|consen 490 PQFPISKTTRFVARITTFDIN-----LPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVEL 564 (603)
T ss_pred CCccccceeEEEEEEEEeecc-----ccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeeec
Confidence 5543 5568999999999974 7899999999999999888887543 3568999999999999
Q ss_pred EeCCeEeeecC------CeEEEeeCCcEEEEEEEEeecC
Q 013007 419 ELISPLPLQQG------QRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 419 ~~~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~~ 451 (451)
+..+|+|++.+ +||++|..|+|||+|+|+++.+
T Consensus 565 e~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~~ 603 (603)
T KOG0458|consen 565 ETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEIIQ 603 (603)
T ss_pred cccCchhhhhhhhchhheeEEEeccCceeeeeeEEeecC
Confidence 99999999965 8999999999999999999864
No 19
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=2.4e-60 Score=443.04 Aligned_cols=367 Identities=30% Similarity=0.503 Sum_probs=323.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-----------------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE----------------- 124 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~----------------- 124 (451)
..++++++++||+|||||||+++|+....++|.+..+. ..|..+.|-++|.|.+.+..-+.
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~--~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRS--YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhh--hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 35689999999999999999999998888888887764 46888888888988777654331
Q ss_pred ------eCCeeEEEEecCChHHHHHHHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 125 ------TAKRHYAHVDCPGHADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 125 ------~~~~~i~iiDtPG~~~~~~~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
..++-+.|+||-||+.|++++++++- ..|+.+|+|.|++|++..|+||+.++..+++| +|++++|+|+.+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP-viVvvTK~D~~~- 269 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP-VIVVVTKIDMVP- 269 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC-EEEEEEecccCc-
Confidence 23466889999999999999999985 58999999999999999999999999999999 678999999996
Q ss_pred HHHHHHHHHHHHHHHHhcCCC--------------------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 197 EELLELVEMELRELLSFYKFP--------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~--------------------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++..+.+++..+|+..+-- ..-+|+|.+|+.+| +|++-|.+.+ ..+|
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg----------~GldlL~e~f-~~Lp 338 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTG----------EGLDLLDEFF-LLLP 338 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccC----------ccHHHHHHHH-HhCC
Confidence 456777778888888765321 11479999999998 7776555444 4577
Q ss_pred CCCc-CCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEE
Q 013007 257 DPER-QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLL 335 (451)
Q Consensus 257 ~~~~-~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~ 335 (451)
...+ +..+||+|+|+++|.+.|+|+|+.|.|.+|.++.||+++++|...++|.+++|+||++|+..++.|.||++++++
T Consensus 339 ~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIemh~~rvdsa~aG~iig~A 418 (527)
T COG5258 339 KRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEMHHYRVDSAKAGSIIGIA 418 (527)
T ss_pred cccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEEeeEEeccccCCcEEEEE
Confidence 5433 457899999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred eccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEE
Q 013007 336 LRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVN 415 (451)
Q Consensus 336 l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~ 415 (451)
++|+..+.+++||+|+.+..|++.++|+|++.+|.|| +.|+.||.|++|..+.+++++++.+ +..+|++||...
T Consensus 419 l~gv~~e~lerGMVl~~~~~pkaVref~AeV~vl~HP-----T~I~aGye~v~H~etI~e~~~f~~i-d~~~L~~GD~g~ 492 (527)
T COG5258 419 LKGVEKEELERGMVLSAGADPKAVREFDAEVLVLRHP-----TTIRAGYEPVFHYETIREAVYFEEI-DKGFLMPGDRGV 492 (527)
T ss_pred ecccCHHHHhcceEecCCCCchhhheecceEEEEeCC-----cEEecCceeeeEeeEeeheeEEEEc-ccccccCCCcce
Confidence 9999999999999999876788999999999999996 8899999999999999999999998 678999999999
Q ss_pred EEEEeC-CeEeeecCCeEEEeeCCcEEEEEEEEeec
Q 013007 416 AAFELI-SPLPLQQGQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 416 v~~~~~-~p~~~~~~~rfvlr~~~~tig~G~I~~~~ 450 (451)
++++|. +|.+++.|++|+||+ |++.|.|.|++++
T Consensus 493 vr~~fkyrP~~v~eGQ~fvFRe-GrskgvG~v~~~~ 527 (527)
T COG5258 493 VRMRFKYRPHHVEEGQKFVFRE-GRSKGVGRVIRVD 527 (527)
T ss_pred EEEEEEeCchhhccCcEEEEec-CCCccceEEeccC
Confidence 999998 999999999999999 5999999999863
No 20
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-59 Score=432.99 Aligned_cols=371 Identities=26% Similarity=0.367 Sum_probs=315.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHH---H--------hcC----cc--ceeeeeccCCchhhhhcCceEEeeEEEee
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVL---A--------EEG----KA--KAIAFDEIDKAPEEKKRGITIATAHVEYE 124 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~---~--------~~g----~~--~~~~~~~~d~~~~e~~~g~t~~~~~~~~~ 124 (451)
.+..+++..||++|.|||||+++|+... . ... .. ..-.+-..|-+++||+.|+||+.++.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4567899999999999999999996421 1 111 11 11122246889999999999999999999
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHH
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELV 203 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~ 203 (451)
+++++|.+.|||||+.|.++|..|++.||++|++|||..|+..||++|..++..+|++++|+++||||+++ +++.++.+
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 78899999
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeccccccccCC--CcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeC--CC
Q 013007 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGK--NEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQ--GR 279 (451)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~--~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~--~~ 279 (451)
..++..|.+.+++ ....+||+||+.|.|.. ....+|+..+.||+.|.. +........+||||+|+.+.+.. ++
T Consensus 163 ~~dy~~fa~~L~~--~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~-v~i~~~~~~~~~RfPVQ~V~Rp~~dfR 239 (431)
T COG2895 163 VADYLAFAAQLGL--KDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILET-VEIADDRSAKAFRFPVQYVNRPNLDFR 239 (431)
T ss_pred HHHHHHHHHHcCC--CcceEEechhccCCcccccccCCCcccCccHHHHHhh-ccccccccccceeeceEEecCCCCccc
Confidence 9999999999988 45689999998886642 223345555666666654 23233445678999999998643 56
Q ss_pred ceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-ccc
Q 013007 280 GTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VKT 358 (451)
Q Consensus 280 G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~ 358 (451)
| +.|+|.+|.+++||+|.+.|++ ...+|+.|..+..++++|.+|+.|++.|. +..|+.|||+|+..+. +..
T Consensus 240 G--yaGtiasG~v~~Gd~vvvlPsG----~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~~~~~~ 311 (431)
T COG2895 240 G--YAGTIASGSVKVGDEVVVLPSG----KTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAADAPPAV 311 (431)
T ss_pred c--cceeeeccceecCCeEEEccCC----CeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccCCCcch
Confidence 7 9999999999999999999965 46899999999999999999999999987 6689999999999875 567
Q ss_pred ccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-----------CCccccCCCCEEEEEEEeCCeEeee
Q 013007 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-----------GDVKMVMPGDNVNAAFELISPLPLQ 427 (451)
Q Consensus 359 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~~~ 427 (451)
++.|.|.++||+. .|+.+|..+.+.+.+..+.++|..+ ...+.|..|+.+.|++.+.+|++++
T Consensus 312 ~~~f~A~vvWm~~------~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~~a~~l~lN~Ig~v~i~~~~pi~fd 385 (431)
T COG2895 312 ADAFDADVVWMDE------EPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQEGAESLPLNEIGRVRISFDKPIAFD 385 (431)
T ss_pred hhhcceeEEEecC------CCCCCCceEEEEecceEEEEEeeeeEEEEeccccccccccccCCCcceEEEEecCCceeec
Confidence 8999999999996 4789999999999999999998765 2567899999999999999999999
Q ss_pred cC------CeEEEee--CCcEEEEEEEEee
Q 013007 428 QG------QRFALRE--GGRTVGAGVVSKV 449 (451)
Q Consensus 428 ~~------~rfvlr~--~~~tig~G~I~~~ 449 (451)
+| +.|+|-| .|.|+|+|+|.+-
T Consensus 386 ~Y~~N~atG~FIlID~~tn~TVgaGmI~~~ 415 (431)
T COG2895 386 AYAENRATGSFILIDRLTNGTVGAGMILAS 415 (431)
T ss_pred ccccCcccccEEEEEcCCCCceeceeeech
Confidence 87 6899965 4889999999863
No 21
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.5e-58 Score=487.00 Aligned_cols=375 Identities=24% Similarity=0.318 Sum_probs=321.6
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHH---------------hcCc--cceeeeeccCCchhhhhcCceEEeeEEEe
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLA---------------EEGK--AKAIAFDEIDKAPEEKKRGITIATAHVEY 123 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~--~~~~~~~~~d~~~~e~~~g~t~~~~~~~~ 123 (451)
..++.++|+++||+|+|||||+++|+.... ..|. ..+.+.+.+|..++|+++|+|++.....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 356678999999999999999999985321 2344 45556678999999999999999999999
Q ss_pred eeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHH
Q 013007 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLEL 202 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~ 202 (451)
++.+.+++|+|||||++|.++|..++..+|++++|||+..|+.+||++|+.++..++++++|+++||||+.+ +++.++.
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~ 179 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDE 179 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999888889999999985 4556777
Q ss_pred HHHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCc
Q 013007 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRG 280 (451)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G 280 (451)
+.+++.++++.+++ .+++++|+||++|.+.... ..+|+..++|++.|... +.|.+..++||+|+|+++|+..+.+
T Consensus 180 i~~~i~~~~~~~~~--~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~-~~~~~~~~~p~r~~i~~v~~~~~~~ 256 (632)
T PRK05506 180 IVADYRAFAAKLGL--HDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV-EIASDRNLKDFRFPVQYVNRPNLDF 256 (632)
T ss_pred HHHHHHHHHHHcCC--CCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC-CCCCCcCCCCceeeEEEEEecCCCc
Confidence 77788888888887 4678999999998655321 23455667888888764 5566668899999999998754322
Q ss_pred eEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCC-cccc
Q 013007 281 TVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS-VKTY 359 (451)
Q Consensus 281 ~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~-~~~~ 359 (451)
..++|+|.+|+|++||+|.++|.+ ..++|++|+.++.++++|.|||+|+++|++ ..++++||+||+++. ++.+
T Consensus 257 ~g~~G~v~~G~l~~gd~v~i~P~~----~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~~~~~~~~ 330 (632)
T PRK05506 257 RGFAGTVASGVVRPGDEVVVLPSG----KTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARADNRPEVA 330 (632)
T ss_pred eEEEEEEecceeecCCEEEEcCCC----ceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecCCCCCcce
Confidence 337899999999999999999854 479999999999999999999999999984 468999999999875 4568
Q ss_pred cEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-----------CCccccCCCCEEEEEEEeCCeEeeec
Q 013007 360 KKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-----------GDVKMVMPGDNVNAAFELISPLPLQQ 428 (451)
Q Consensus 360 ~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~~~~ 428 (451)
++|+|++.||++ .++.+||++++|+|+.+++|+|..+ .+++++++|+.+.|+|++.+|+|+++
T Consensus 331 ~~f~a~i~~l~~------~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~ 404 (632)
T PRK05506 331 DQFDATVVWMAE------EPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDP 404 (632)
T ss_pred eEEEEEEEEecc------cccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeee
Confidence 999999999986 3577999999999999999999866 25688999999999999999999998
Q ss_pred C------CeEEEee--CCcEEEEEEEEeec
Q 013007 429 G------QRFALRE--GGRTVGAGVVSKVI 450 (451)
Q Consensus 429 ~------~rfvlr~--~~~tig~G~I~~~~ 450 (451)
+ +||+||+ +++|||+|.|++.+
T Consensus 405 ~~~~~~lGRfilrdr~~~~Tva~G~I~~~~ 434 (632)
T PRK05506 405 YARNRTTGSFILIDRLTNATVGAGMIDFAL 434 (632)
T ss_pred ccccccCceEEEEeccCCceEEEEEECccc
Confidence 7 6799954 79999999998764
No 22
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-59 Score=436.34 Aligned_cols=377 Identities=31% Similarity=0.462 Sum_probs=340.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHH---------------HHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~---------------~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 127 (451)
+.+.|+.++||+++||||+-+.|. +...+.++..+...|.+|...+||++|.|+.....+|++..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 678999999999999999988763 23345678888889999999999999999999999999999
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-------ccHHHHHHHHHHcCCCeEEEEEeeccCCC---hH
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVCFLNKVDLVE---DE 197 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-------~~t~~~l~~~~~~~ip~iivviNK~D~~~---~~ 197 (451)
++++++|+|||..|..+|+.++.+||.+++|++|..|.+ .||++|..+++.+++.++|+++||||-.. .+
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 999999999999999999999999999999999987643 69999999999999999999999999765 57
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-CCCCeeeccccccccCCCc---ccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEE
Q 013007 198 ELLELVEMELRELLSFYKFPG-DEIPIIRGSATSALQGKNE---EIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDV 273 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~~-~~~pvi~~Sa~~g~~~~~~---~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~ 273 (451)
+++++.++.+..+|..+|+++ .+..++|+|+.+|.+.++. ..+|+.+..+++.|++ +|...|..++||+++|.+-
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI~~K 315 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPVANK 315 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcccccCCcccCCccceehhc-cCcccccCCCCEEeehhhh
Confidence 899999999999999999876 3567899999999777543 3567888889999988 8888899999999999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecC
Q 013007 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKP 353 (451)
Q Consensus 274 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~ 353 (451)
|++ .|||+.|+|+||.++.||.+.++|.. ..+.|.+|......++.+.|||++-+.|+|+..+|+..|.+||++
T Consensus 316 ykd--mGTvv~GKvEsGsi~kg~~lvvMPnk----~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~ 389 (501)
T KOG0459|consen 316 YKD--MGTVVGGKVESGSIKKGQQLVVMPNK----TNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSP 389 (501)
T ss_pred ccc--cceEEEEEecccceecCCeEEEccCC----cceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecC
Confidence 875 57999999999999999999999944 468999999999999999999999999999999999999999999
Q ss_pred CCc-ccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe------------CCccccCCCCEEEEEEEe
Q 013007 354 GSV-KTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL------------GDVKMVMPGDNVNAAFEL 420 (451)
Q Consensus 354 ~~~-~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~------------~~~~~l~~g~~~~v~~~~ 420 (451)
+++ .+...|.|+|.+|++. +-|..||.+++|+|++-..|.|..+ ..+++++.|+.++++++.
T Consensus 390 ~n~~~s~~~F~aqi~IlE~~-----sIi~~GY~~VlHIht~ieEv~i~li~~idkktg~ksKkrprFvkq~~~~iarl~t 464 (501)
T KOG0459|consen 390 NNPCKSGRTFDAQIVILEHK-----SIICAGYSCVLHIHTAVEEVEIKLIHLIDKKTGEKSKKRPRFVKQGQKCIARLET 464 (501)
T ss_pred CCccccccEEEEEEEEEecC-----ceeccCcceEeeeeeehhheeeeeeeeecccccccccCCCeeecCCcEEEEEEec
Confidence 875 6789999999999984 5789999999999999888888654 267899999999999999
Q ss_pred CCeEeeecC------CeEEEeeCCcEEEEEEEEeecC
Q 013007 421 ISPLPLQQG------QRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 421 ~~p~~~~~~------~rfvlr~~~~tig~G~I~~~~~ 451 (451)
..|+|++.+ +||.||++|.|||+|+|+++++
T Consensus 465 ~~~iCle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 465 EGPICLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred CCcEehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 999999975 8999999999999999999875
No 23
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=7.6e-57 Score=451.76 Aligned_cols=350 Identities=35% Similarity=0.534 Sum_probs=295.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee--------------e---
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--------------T--- 125 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--------------~--- 125 (451)
+++++|+++||+|||||||+++|++. .+|..++|++||+|+...+..++ .
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~-------------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPV 68 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCe-------------ecccCHhHHHcCceeEecccccccccccccCcccccccccc
Confidence 56789999999999999999999732 36888999999999988754332 1
Q ss_pred ---------CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 126 ---------AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 126 ---------~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
....++|||||||++|.+++..++..+|++++|||++++. ..|+++|+..+..++++++++++||+|+.+
T Consensus 69 ~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 69 CPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred ccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 1367999999999999999999999999999999999998 899999999999999888889999999986
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEe
Q 013007 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~ 275 (451)
.+.. ....+++.++++... ....|++++||++| .|+++|+++|...+|.|.++.+.||+|+|+++|.
T Consensus 149 ~~~~-~~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 149 KEKA-LENYEEIKEFVKGTV--AENAPIIPVSALHN----------ANIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HHHH-HHHHHHHHhhhhhcc--cCCCeEEEEECCCC----------CChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 4332 222345556665542 24679999999999 8999999999998888888889999999999998
Q ss_pred eCC--------CceEEEEEEEeeeeecCCEEEEecccC----C----CCceeEEEEEeecceeccEEecCCeEEEEec--
Q 013007 276 IQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ----G----PSLKTTVTGVEMFKKILDRGEAGDNVGLLLR-- 337 (451)
Q Consensus 276 ~~~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~----~----~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~-- 337 (451)
+++ +|+|++|+|.+|+|++||+|.++|... + .+..++|++|+.++.++++|.|||+|+++++
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~~~~~~a~~G~~v~i~l~~~ 295 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGGYKVEEARPGGLVGVGTKLD 295 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECCEECCEEcCCCEEEEeeccC
Confidence 776 577999999999999999999999631 0 1235799999999999999999999999984
Q ss_pred -cccccCCCCCeEEecCCC-cccccEEEEEEEEeecCCC----CcccccccCceeEEEEEeeeeeeeEEEeCCccccCCC
Q 013007 338 -GLKREDVQRGQVIAKPGS-VKTYKKFEAEIYVLTKDEG----GRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPG 411 (451)
Q Consensus 338 -~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g 411 (451)
+++..++.+||+|++++. ++.+++|+|++.||++..+ .+..+|++||++++|+++.++.|+|..+++
T Consensus 296 ~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~g~~~~l~~gt~~~~~~v~~~~~------- 368 (406)
T TIGR03680 296 PALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKTGEVLMLNVGTATTVGVVTSARK------- 368 (406)
T ss_pred CCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCCCCEEEEEEccceEEEEEEEcCC-------
Confidence 677889999999999975 4567999999999987421 124789999999999999999999998853
Q ss_pred CEEEEEEEeCCeEeeecCCeEEE--eeC--CcEEEEEEEE
Q 013007 412 DNVNAAFELISPLPLQQGQRFAL--REG--GRTVGAGVVS 447 (451)
Q Consensus 412 ~~~~v~~~~~~p~~~~~~~rfvl--r~~--~~tig~G~I~ 447 (451)
+ .++++|.+|+|+++|+||+| |.+ ++++|+|.|.
T Consensus 369 ~--~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~~ 406 (406)
T TIGR03680 369 D--EIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGIIK 406 (406)
T ss_pred c--EEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEeC
Confidence 2 47888999999999999999 444 4999999873
No 24
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=8.9e-57 Score=450.72 Aligned_cols=353 Identities=34% Similarity=0.523 Sum_probs=296.8
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee--------------
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-------------- 125 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-------------- 125 (451)
.++++++||+++||+|||||||+++|++. .+|..++|++||+|++.....+.+
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~-------------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~ 70 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGV-------------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTT 70 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCe-------------ecccCHhHHhcCcEEEecccccccccccccCccccccc
Confidence 45778899999999999999999999632 368899999999999876533221
Q ss_pred C------------CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 126 A------------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 126 ~------------~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
. .+.++|||||||++|..++..++..+|++++|+|++++. ..++.+++..+...+++++++|+||+|
T Consensus 71 ~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 71 EPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeec
Confidence 1 257999999999999999999999999999999999987 899999999998899877889999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEE
Q 013007 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIED 272 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~ 272 (451)
+.++++.. ...+++.++++.+. ....|++++||+++ .|+++|++.|.+.++.|.++.++||+|+|++
T Consensus 151 l~~~~~~~-~~~~~i~~~l~~~~--~~~~~ii~vSA~~g----------~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~ 217 (411)
T PRK04000 151 LVSKERAL-ENYEQIKEFVKGTV--AENAPIIPVSALHK----------VNIDALIEAIEEEIPTPERDLDKPPRMYVAR 217 (411)
T ss_pred cccchhHH-HHHHHHHHHhcccc--CCCCeEEEEECCCC----------cCHHHHHHHHHHhCCCCCCCCCCCceEEEEe
Confidence 98644322 22335555555432 13578999999999 8999999999998888888889999999999
Q ss_pred EEeeCC--------CceEEEEEEEeeeeecCCEEEEecccC------CC--CceeEEEEEeecceeccEEecCCeEEEEe
Q 013007 273 VFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ------GP--SLKTTVTGVEMFKKILDRGEAGDNVGLLL 336 (451)
Q Consensus 273 ~~~~~~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~------~~--~~~~~V~~I~~~~~~v~~a~aG~~v~l~l 336 (451)
+|.+++ +|+|++|+|.+|+|++||.|.++|.+. +. +..++|++|+.++.++++|.|||+|+++|
T Consensus 218 ~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~~~~~~a~~G~~v~i~l 297 (411)
T PRK04000 218 SFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGGEKVEEARPGGLVGVGT 297 (411)
T ss_pred eeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECCEECCEEcCCCEEEEEe
Confidence 998765 467999999999999999999998542 11 13579999999999999999999999998
Q ss_pred c---cccccCCCCCeEEecCCC-cccccEEEEEEEEeecCCCCc----ccccccCceeEEEEEeeeeeeeEEEeCCcccc
Q 013007 337 R---GLKREDVQRGQVIAKPGS-VKTYKKFEAEIYVLTKDEGGR----HTAFFSNYRPQIYLRTADVTGKVELLGDVKMV 408 (451)
Q Consensus 337 ~---~~~~~~i~~G~vl~~~~~-~~~~~~f~a~i~~l~~~~~~~----~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l 408 (451)
+ +++..++++||+|++++. ++.+++|+|++.+|++..+++ +.+|.+||++++|+++.++.|+|..++.
T Consensus 298 ~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~---- 373 (411)
T PRK04000 298 KLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLMLNVGTATTVGVVTSARK---- 373 (411)
T ss_pred ccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEEEEEeccEEEEEEEEcCC----
Confidence 6 677789999999999876 456799999999999732222 4689999999999999999999999842
Q ss_pred CCCCEEEEEEEeCCeEeeecCCeEEE--eeCC--cEEEEEEEE
Q 013007 409 MPGDNVNAAFELISPLPLQQGQRFAL--REGG--RTVGAGVVS 447 (451)
Q Consensus 409 ~~g~~~~v~~~~~~p~~~~~~~rfvl--r~~~--~tig~G~I~ 447 (451)
+ .++++|.+|+|+++|+||+| |+++ |++|+|.|.
T Consensus 374 ---~--~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~~~ 411 (411)
T PRK04000 374 ---D--EAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGIIK 411 (411)
T ss_pred ---c--EEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEEeC
Confidence 3 67788999999999999999 6776 999999873
No 25
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=4.1e-57 Score=470.84 Aligned_cols=336 Identities=31% Similarity=0.496 Sum_probs=296.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~~~~ 145 (451)
.|+++||+|||||||+++|++. .+|..++|+++|+|++..+..+.. ++..++|||||||++|.++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 6899999999999999999853 357888999999999998777765 35678999999999999999
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
..++..+|++++|||+++|+.+||++|+.++..+++|++|+|+||||+.+ ++.++.+.+++.++++..++ +..|+++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~-~~~~~~v~~ei~~~l~~~~~--~~~~ii~ 145 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD-EARIAEVRRQVKAVLREYGF--AEAKLFV 145 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC-HHHHHHHHHHHHHHHHhcCC--CCCcEEE
Confidence 99999999999999999999999999999999999998789999999986 34556667788888887766 4578999
Q ss_pred ccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccC
Q 013007 226 GSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQ 305 (451)
Q Consensus 226 ~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~ 305 (451)
+||++| .|+++|+++|.+.. .+.+..++||+|+|+++|.++|.|+|++|+|.+|+|++||+|.+.|.+
T Consensus 146 VSA~tG----------~gI~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~- 213 (614)
T PRK10512 146 TAATEG----------RGIDALREHLLQLP-EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN- 213 (614)
T ss_pred EeCCCC----------CCCHHHHHHHHHhh-ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCC-
Confidence 999999 89999999998754 455667899999999999999999999999999999999999998843
Q ss_pred CCCceeEEEEEeecceeccEEecCCeEEEEecc-ccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccccCc
Q 013007 306 GPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRG-LKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNY 384 (451)
Q Consensus 306 ~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~-~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~ 384 (451)
..++|++|+.+++++++|.|||+|++++++ ++..++++||+|++++++.++..+.+. +.. ..+|++|+
T Consensus 214 ---~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~~~~~~~~~~~~---l~~-----~~~l~~~~ 282 (614)
T PRK10512 214 ---KPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVE---LQT-----HTPLTQWQ 282 (614)
T ss_pred ---CcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCCCCccceeEEEE---EcC-----CccCCCCC
Confidence 468999999999999999999999999997 888899999999988766666666544 343 25799999
Q ss_pred eeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEee--CCcEEEEEEEEeec
Q 013007 385 RPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALRE--GGRTVGAGVVSKVI 450 (451)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~--~~~tig~G~I~~~~ 450 (451)
++++|+++.++.|+|..++ .+.+++.|++|+++.+|+||+||+ ..+|+|+|.|+...
T Consensus 283 ~~~~~~gt~~~~~~i~~l~---------~~~~~l~l~~p~~~~~gdr~ilr~~s~~~tigGg~Vld~~ 341 (614)
T PRK10512 283 PLHIHHAASHVTGRVSLLE---------DNLAELVLDTPLWLADNDRLVLRDISARNTLAGARVVMLN 341 (614)
T ss_pred EEEEEEcccEEEEEEEEcC---------CeEEEEEECCcccccCCCEEEEEeCCCCEEEEEEEEcccC
Confidence 9999999999999999882 357999999999999999999999 46999999998753
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=4.7e-53 Score=439.47 Aligned_cols=335 Identities=30% Similarity=0.502 Sum_probs=287.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++||+|||||||+++|++. ..|..++|+++|+|++..+..++.++..++|||||||++|.++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~-------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI-------------AADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc-------------cCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999999853 24777889999999999888888888899999999999999999
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
..++..+|++++|||+++|+.+|+.+|+..+..+++|++|+|+||||+.+. +.++.+.+++.++++.+++. ...|+++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~-~~~~~~~~ei~~~l~~~~~~-~~~~ii~ 145 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNE-EEIKRTEMFMKQILNSYIFL-KNAKIFK 145 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCH-HHHHHHHHHHHHHHHHhCCC-CCCcEEE
Confidence 999999999999999999999999999999999999988899999999863 44555667788888877653 2579999
Q ss_pred ccccccccCCCcccchhhHHHHHHHHHhhCCCC-CcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEeccc
Q 013007 226 GSATSALQGKNEEIGKKAILKLMDAVDEYIPDP-ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLT 304 (451)
Q Consensus 226 ~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~-~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~ 304 (451)
+||++| .|++++++.|.+.++.. ....+.||+|+|+++|.++|.|+|++|+|.+|++++||+|.++|.+
T Consensus 146 vSA~tG----------~GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTG----------QGIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCC----------CCchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 999998 77888777776654321 1235789999999999999999999999999999999999999954
Q ss_pred CCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccccCc
Q 013007 305 QGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNY 384 (451)
Q Consensus 305 ~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~ 384 (451)
..++|++|+.+++++++|.|||+|+++|++++..++++|++++++..+ +..+...+.. ..+|.+|+
T Consensus 216 ----~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~--~~~~~~~~~~--------~~~l~~~~ 281 (581)
T TIGR00475 216 ----HEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP--KLRVVVKFIA--------EVPLLELQ 281 (581)
T ss_pred ----ceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC--CceEEEEEEc--------CCccCCCC
Confidence 479999999999999999999999999999999999999888765432 2233333322 14689999
Q ss_pred eeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeC-CcEEEEEEEEe
Q 013007 385 RPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREG-GRTVGAGVVSK 448 (451)
Q Consensus 385 ~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~-~~tig~G~I~~ 448 (451)
.+.+|+++.++.|++..+++. .+++++.+|+++..|+||++|++ .+|+|+|.|+.
T Consensus 282 ~~~~~~gt~~~~~~i~~l~~~---------~~~l~l~~P~~~~~gd~~i~r~~~~~tiggg~vl~ 337 (581)
T TIGR00475 282 PYHIAHGMSVTTGKISLLDKG---------IALLTLDAPLILAKGDKLVLRDSSGNFLAGARVLE 337 (581)
T ss_pred eEEEEEeceEEEEEEEEccCc---------EEEEEECCceecCCCCEEEEEeCCCEEEeeeEEec
Confidence 999999999999999988532 78889999999999999999995 58999999985
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=3.4e-55 Score=407.18 Aligned_cols=365 Identities=25% Similarity=0.388 Sum_probs=308.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEe-------------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEY------------------- 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~------------------- 123 (451)
..+|+++|++|+|||||++.|++...++|++.++.. +-.+..|.+.|.|.... ..-|
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqk--LFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQK--LFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHH--HhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 479999999999999999999999999999876542 33455555656554432 1111
Q ss_pred ----eeCCeeEEEEecCChHHHHHHHHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 124 ----ETAKRHYAHVDCPGHADYVKNMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 124 ----~~~~~~i~iiDtPG~~~~~~~~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
+...+-++|||.+||++|+++++.++.. .|+.+|+|.++.|+...|+||+.++..+.+| +.+|++|+|+++.
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VP-VfvVVTKIDMCPA- 288 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVP-VFVVVTKIDMCPA- 288 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCc-EEEEEEeeccCcH-
Confidence 2234568999999999999999999875 8999999999999999999999999999999 5589999999974
Q ss_pred HHHHHHHHHHHHHHHhcCCC---------------------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 198 ELLELVEMELRELLSFYKFP---------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~---------------------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++..+.+..+++..|.. ...+|+|.+|..+| .+++ ||..+.+.++
T Consensus 289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG----------~NL~-LLkmFLNlls 357 (641)
T KOG0463|consen 289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTG----------TNLP-LLKMFLNLLS 357 (641)
T ss_pred HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccC----------CChH-HHHHHHhhcC
Confidence 44444444666777765431 12367888887776 5544 5555555555
Q ss_pred CC-CcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEE
Q 013007 257 DP-ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLL 335 (451)
Q Consensus 257 ~~-~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~ 335 (451)
.. .-..+.|..|+|+++|.++|+|+|+.|+..+|+|+.+|.+.++|...+.|.+..|+||+..+.++..+.+||.+.++
T Consensus 358 ~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRKRMpV~~VrcGQtASFA 437 (641)
T KOG0463|consen 358 LRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRKRMPVGIVRCGQTASFA 437 (641)
T ss_pred cccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhccccceEEeccchhhhH
Confidence 32 23467899999999999999999999999999999999999999877778999999999999999999999999999
Q ss_pred eccccccCCCCCeEEecCC-CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEE
Q 013007 336 LRGLKREDVQRGQVIAKPG-SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNV 414 (451)
Q Consensus 336 l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~ 414 (451)
|+.+++.++++||++.++. .|.++|+|+|+|.+|+|+ ++|.+.|+.++||++++|+|.|..+ +.++|+.||.+
T Consensus 438 LKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILVLHHP-----TTIsprYQAMvHcGSiRQTAtivsM-~kdcLRTGDka 511 (641)
T KOG0463|consen 438 LKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILVLHHP-----TTISPRYQAMVHCGSIRQTATIVSM-GKDCLRTGDKA 511 (641)
T ss_pred hhhcchhhhhcceEEecCCCCcceeeEEeeeEEEEecC-----CccCcchhheeeeccccceeeeeec-ChhhhhcCCcc
Confidence 9999999999999999998 478999999999999995 8899999999999999999999988 77999999999
Q ss_pred EEEEEeC-CeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 415 NAAFELI-SPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 415 ~v~~~~~-~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
.|.|+|. .|+|+++|+|++||+ |||.|+|.|++++.
T Consensus 512 ~V~FrFIkqPEYir~gqrlVFRE-GRTKAVGti~~~lp 548 (641)
T KOG0463|consen 512 KVQFRFIKQPEYIRPGQRLVFRE-GRTKAVGTISSVLP 548 (641)
T ss_pred eEEEEEecCcceecCCceEEeec-ccceeeeeeccccc
Confidence 9999998 799999999999999 59999999998763
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-53 Score=403.22 Aligned_cols=334 Identities=30% Similarity=0.512 Sum_probs=292.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
.|+.+||++||||||+.++++. ..|..++|.+||+|++..+.+++.+++.+.|+|+|||++|+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 6899999999999999999855 568999999999999999999999999999999999999999999
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
.++...|+++||||+++|++.||.||+..+..+|+++.++|+||+|+.+++ +.+ +.++++++.+.+ .+.++|++
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~-r~e---~~i~~Il~~l~l--~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA-RIE---QKIKQILADLSL--ANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH-HHH---HHHHHHHhhccc--cccccccc
Confidence 999999999999999999999999999999999999989999999999754 333 344455555444 56889999
Q ss_pred cccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCC
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQG 306 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~ 306 (451)
|+.+| .|+++|.+.|.+....+.++.+.||+++|++.|.++|+|+|++|++.||++++||++++.|.+
T Consensus 143 s~~~g----------~GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~-- 210 (447)
T COG3276 143 SAKTG----------RGIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPIN-- 210 (447)
T ss_pred ccccC----------CCHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCC--
Confidence 99999 999999999998765567889999999999999999999999999999999999999999855
Q ss_pred CCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecCCCCcccccccCcee
Q 013007 307 PSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRP 386 (451)
Q Consensus 307 ~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~ 386 (451)
.+++|+|||.+++++++|.||++|+++|+|++.+++.||++|+++++.+++..|++.+.+.... ..++.++...
T Consensus 211 --k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~~~~v~~~~~~~~~i~~~~----~~~l~~~~~~ 284 (447)
T COG3276 211 --KEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPEPLEVTTRLIVELEIDPLF----KKTLKQGQPV 284 (447)
T ss_pred --CeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCCCCCcceEEEEEEEecccc----ccccCCCceE
Confidence 5799999999999999999999999999999899999999999999888899999998876543 4679999999
Q ss_pred EEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeC--CcEEEEEEEE
Q 013007 387 QIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREG--GRTVGAGVVS 447 (451)
Q Consensus 387 ~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~--~~tig~G~I~ 447 (451)
++|++..+++|++..++.. +++.+.+|+..-.+++++||++ ..+.++++|+
T Consensus 285 hi~~g~~~~~~~i~~l~~~----------~~l~~~k~i~~~~~~~l~lr~~~a~~~~~g~rvl 337 (447)
T COG3276 285 HIHVGLRSVTGRIVPLEKN----------AELNLVKPIALGDNDRLVLRDNSAVIKLAGARVL 337 (447)
T ss_pred EEEEeccccceEeeecccc----------ceeeeecccccccCceEEEEcccceeeeccceEE
Confidence 9999999999999877432 5556667777766777777765 3444544544
No 29
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-50 Score=365.83 Aligned_cols=351 Identities=33% Similarity=0.512 Sum_probs=300.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe-------------------
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY------------------- 123 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~------------------- 123 (451)
++..||+++||+|||||||+.+|++. -+|.+.+|.+||+|+.+.+...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGv-------------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~ 74 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGV-------------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPK 74 (415)
T ss_pred CcceEeeeeeecccchhhheehhhce-------------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCC
Confidence 67889999999999999999999965 3588999999999998864321
Q ss_pred -ee------CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 124 -ET------AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 124 -~~------~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
+. --+++.|+|+|||+-++.+|+++++..|+|+|||+|++ .+++||+|||..+.-.|++++|++-||+|+++
T Consensus 75 C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~ 154 (415)
T COG5257 75 CPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVS 154 (415)
T ss_pred CCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceec
Confidence 00 02468899999999999999999999999999999997 68999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEe
Q 013007 196 DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS 275 (451)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~ 275 (451)
.++.++..+ ++++|++.... ++.|++|+||..+ .+++.|+++|.+++|.|.++.+.|++|+|.++|.
T Consensus 155 ~E~AlE~y~-qIk~FvkGt~A--e~aPIIPiSA~~~----------~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 155 RERALENYE-QIKEFVKGTVA--ENAPIIPISAQHK----------ANIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHHH-HHHHHhccccc--CCCceeeehhhhc----------cCHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 776666554 78899987654 7899999999988 8999999999999999999999999999999998
Q ss_pred eCC--------CceEEEEEEEeeeeecCCEEEEecccC--------CCCceeEEEEEeecceeccEEecCCeEEEEec--
Q 013007 276 IQG--------RGTVATGRVEQGTIKVGEEVEVLGLTQ--------GPSLKTTVTGVEMFKKILDRGEAGDNVGLLLR-- 337 (451)
Q Consensus 276 ~~~--------~G~v~~g~v~sG~l~~gd~v~i~p~~~--------~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~-- 337 (451)
++. +|-|+.|.+.+|.+++||++.|.|.-. +.+...+|.||+..+..+++|.||..+++.-+
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~ag~~~~~ea~PGGLvgvGT~lD 301 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQAGGEDVEEARPGGLVGVGTKLD 301 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEeCCeeeeeccCCceEEEecccC
Confidence 863 688999999999999999999998421 12356789999999999999999999999632
Q ss_pred -cccccCCCCCeEEecCCCc-ccccEEEEEEEEeecCCC----CcccccccCceeEEEEEeeeeeeeEEEeCCccccCCC
Q 013007 338 -GLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEG----GRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPG 411 (451)
Q Consensus 338 -~~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~----~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g 411 (451)
.+.+.|.-.|.++..++.+ +...+|+.+..+|++-.| .+..+|+.|-..++.++++..-+.+....+.
T Consensus 302 P~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~~E~Lml~VGtatT~GvV~~~k~d------ 375 (415)
T COG5257 302 PTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKTNEVLMLNVGTATTVGVVTSAKKD------ 375 (415)
T ss_pred cchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccCCCeEEEEeecceeEEEEEEecCc------
Confidence 2345677889999999874 557899999999985433 2345799999999999999998988887432
Q ss_pred CEEEEEEEeCCeEeeecCCeEEEee----CCcEEEEEEEEe
Q 013007 412 DNVNAAFELISPLPLQQGQRFALRE----GGRTVGAGVVSK 448 (451)
Q Consensus 412 ~~~~v~~~~~~p~~~~~~~rfvlr~----~~~tig~G~I~~ 448 (451)
.+++.|.+|+|.+.|.|+.+.+ .||.||+|.|..
T Consensus 376 ---~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~ik~ 413 (415)
T COG5257 376 ---EIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTIKE 413 (415)
T ss_pred ---eEEEEeccceecCCCCEEEEEeeecceEEEEeEEEEec
Confidence 6889999999999999998843 389999999975
No 30
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-49 Score=367.11 Aligned_cols=367 Identities=24% Similarity=0.368 Sum_probs=313.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE--Ee------------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV--EY------------------ 123 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~--~~------------------ 123 (451)
...+++++|..|+|||||++.|+....++|++.++.. +-.++.|...|.|.....- -|
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln--~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLN--IFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeee--hhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3579999999999999999999999999999988763 4456777777776554321 11
Q ss_pred -eeCCeeEEEEecCChHHHHHHHHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHH
Q 013007 124 -ETAKRHYAHVDCPGHADYVKNMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELL 200 (451)
Q Consensus 124 -~~~~~~i~iiDtPG~~~~~~~~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~ 200 (451)
+.+.+-++|||.+||.+|.++++.++.. .|+|+|||+|..|+...|+||+.++.++++| +.++++|||+.+....
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iP-fFvlvtK~Dl~~~~~~- 321 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIP-FFVLVTKMDLVDRQGL- 321 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCC-eEEEEEeeccccchhH-
Confidence 2245678999999999999999999985 7999999999999999999999999999999 5589999999986543
Q ss_pred HHHHHHHHHHHHhcCCC---------------------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 201 ELVEMELRELLSFYKFP---------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 201 ~~~~~~~~~~l~~~~~~---------------------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
+...+++.++++..|.. +.-+|+|.+|..+| +++.-| ..+...+++..
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsG----------egl~ll-~~fLn~Lsp~~ 390 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSG----------EGLRLL-RTFLNCLSPAG 390 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCc----------cchhHH-HHHHhhcCCcC
Confidence 33445777777777642 23478899998888 766544 44444455322
Q ss_pred c------CCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEE
Q 013007 260 R------QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVG 333 (451)
Q Consensus 260 ~------~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~ 333 (451)
. -...|..|.|++.|.++.+|.|+.|.+.+|.++.|+.+.++|...+.|.+.+|.+|++++.++..+.|||.+.
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rnr~acrvvraGqaAs 470 (591)
T KOG1143|consen 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRNRQACRVVRAGQAAS 470 (591)
T ss_pred ChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeeccccceeeecCcccee
Confidence 1 2367889999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred EEeccccccCCCCCeEEecCC-CcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCC
Q 013007 334 LLLRGLKREDVQRGQVIAKPG-SVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGD 412 (451)
Q Consensus 334 l~l~~~~~~~i~~G~vl~~~~-~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~ 412 (451)
+.+...+...+++||++..++ +|+.+..|+|++.+|-|. +.|..||+.++|+++.+++|.|+.|.+.++|+.|+
T Consensus 471 lsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~lLfHa-----T~i~~GFQ~TVhiGsvrqTAvi~~I~~~d~lrtg~ 545 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLLLFHA-----TYICEGFQATVHIGSVRQTAVITHIDDADCLRTGK 545 (591)
T ss_pred eeccCCCccchhcceEEeecCCCCceEEEEeeeehhhhhh-----HhheecceEEEEEcceeeeeeeeeecccccccCCc
Confidence 998866777899999999886 588899999999999984 78999999999999999999999999999999999
Q ss_pred EEEEEEEeC-CeEeeecCCeEEEeeCCcEEEEEEEEeecC
Q 013007 413 NVNAAFELI-SPLPLQQGQRFALREGGRTVGAGVVSKVIS 451 (451)
Q Consensus 413 ~~~v~~~~~-~p~~~~~~~rfvlr~~~~tig~G~I~~~~~ 451 (451)
.|.|.|+|. +|+|+++|.+++||+ |.|+|+|.|++|++
T Consensus 546 ~AvV~f~F~~hPEyir~G~~ilfRe-G~tKGiG~Vt~Vfp 584 (591)
T KOG1143|consen 546 WAVVKFCFAYHPEYIREGSPILFRE-GKTKGIGEVTKVFP 584 (591)
T ss_pred eEEEEEEecCCchhccCCCeeeeec-ccccccceEEEEEe
Confidence 999999996 999999999999999 59999999999863
No 31
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.1e-43 Score=368.43 Aligned_cols=282 Identities=30% Similarity=0.432 Sum_probs=236.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
+||+++||+|||||||+++|+..............+.+|..++|++||+|+......+.+.+.+++|||||||.+|..++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 69999999999999999999864321111111123578999999999999999988899999999999999999999999
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC--CCCe
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD--EIPI 223 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~pv 223 (451)
.++++.+|+++||||+.+|++.||++++..+...++| +|+|+||||+.+. ..+.+.+++.+++..++.+.+ .+|+
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a--~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPSA--RPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCCCc--CHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999999999999999999999999999 5689999998642 233445566777766655422 5799
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecc
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGL 303 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~ 303 (451)
+++||++|+...+......++..|++.+.+++|+|..+.++||+++|++++.++++|++++|||.+|+|++||.|.+.+.
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~ 238 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKR 238 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecC
Confidence 99999999665444334468999999999999999888899999999999999999999999999999999999999885
Q ss_pred cCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCCC
Q 013007 304 TQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGS 355 (451)
Q Consensus 304 ~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~ 355 (451)
+. .....+|++|+.+ +.++++|.|||+|++. ++ .++.+||+||+++.
T Consensus 239 ~~-~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~--gl--~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 239 DG-TIENGRISKLLGFEGLERVEIDEAGAGDIVAVA--GL--EDINIGETIADPEV 289 (594)
T ss_pred CC-ceeEEEEEEEEEccCCCceECCEECCCCEEEEe--CC--cccCCCCEEeCCCc
Confidence 32 2346899999864 6899999999999885 44 58999999998763
No 32
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-43 Score=335.35 Aligned_cols=286 Identities=29% Similarity=0.426 Sum_probs=244.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++.+||+++.|+|||||||++.|+++...-..........||+...|++||+||-.......|++.+++|+|||||.||-
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 34689999999999999999999876432222222234579999999999999988777788889999999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC--C
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD--E 220 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 220 (451)
.++.+.+...|+++|+|||.+|..+||+..+..+..+|.+++ ||+||+|.... +-+++.++..+++-.++.+.+ +
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp~A--rp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRPDA--RPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCCCC--CHHHHHHHHHHHHHHhCCChhhCC
Confidence 999999999999999999999999999999999999999965 79999999862 223455667777777776543 6
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEV 300 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i 300 (451)
+|+++.||+.|+...++......+..|++.|.+++|+|..+.++||.|+|...-+.++.|++..|||.+|++|+||.|.+
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~ 239 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVAL 239 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEE
Confidence 89999999999888777777788999999999999999999999999999998888999999999999999999999999
Q ss_pred ecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCCCc
Q 013007 301 LGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV 356 (451)
Q Consensus 301 ~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~ 356 (451)
...+ +.....+|..+..+ +.++++|.|||+|+++ |+ .++..||++|+++.+
T Consensus 240 i~~~-g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaia--G~--~~~~igdTi~d~~~~ 294 (603)
T COG1217 240 IKSD-GTTENGRITKLLGFLGLERIEIEEAEAGDIVAIA--GL--EDINIGDTICDPDNP 294 (603)
T ss_pred EcCC-CcEEeeEEEeeeeccceeeeecccccccCEEEEc--Cc--ccccccccccCCCCc
Confidence 8744 33567889888755 5789999999999885 55 588899999998753
No 33
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=346.91 Aligned_cols=283 Identities=28% Similarity=0.364 Sum_probs=232.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..+||+++||+|||||||+++|+.......+......+.+|..+.|+++|+|+......+++.+..+++||||||.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 46899999999999999999998632111011111135789999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC--CCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG--DEI 221 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~ 221 (451)
.+..+++.+|++++|+|+.+|+..|++.++..+...++|. ++++||+|+... .++.+.+++.+++..++... ..+
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~~~a--~~~~vl~ei~~l~~~l~~~~~~~~~ 160 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRPGA--RPDWVVDQVFDLFVNLDATDEQLDF 160 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCCCCC--chhHHHHHHHHHHhccCccccccCC
Confidence 9999999999999999999999999999999999999995 689999998752 23334445666665544432 358
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEe
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVL 301 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~ 301 (451)
|++++||++|++..+......++..|++.+.+++|+|.++.++||+++|++++.++++|++++|||.+|+|++||.|.+.
T Consensus 161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~ 240 (607)
T PRK10218 161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240 (607)
T ss_pred CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEe
Confidence 99999999997654333333578999999999999998888999999999999999999999999999999999999997
Q ss_pred cccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 302 GLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 302 p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
+.+ +.....+|.+|... +.++++|.|||+|++. + ..++..||+||+++
T Consensus 241 ~~~-~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GdTl~~~~ 292 (607)
T PRK10218 241 DSE-GKTRNAKVGKVLGHLGLERIETDLAEAGDIVAIT--G--LGELNISDTVCDTQ 292 (607)
T ss_pred cCC-CcEeeEEEEEEEEEecCCceECCEEcCCCEEEEE--C--ccccccCcEEecCC
Confidence 642 11235788888644 6899999999999875 3 45889999999765
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-40 Score=306.51 Aligned_cols=339 Identities=29% Similarity=0.511 Sum_probs=265.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee---------CCeeEEEEec
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---------AKRHYAHVDC 135 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---------~~~~i~iiDt 135 (451)
++|++++||+|+|||||..+|... |... ..|..+..++||+|.+..+..+.. +..+++++|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~----~STa-----AFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSEL----GSTA-----AFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhh----ccch-----hhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 589999999999999999999744 3222 348899999999999987554422 3356799999
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH---HHHHHHHHHHHHHHH
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE---ELLELVEMELRELLS 212 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~---~~~~~~~~~~~~~l~ 212 (451)
|||...++..+.+....|..++|||+..|.+.||.|++-+...+-.+ +|||+||+|...+. ..++.....++.-++
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~k-lvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKK-LVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccc-eEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888877666 77899999988753 334555566777788
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeee
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 292 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l 292 (451)
..+++ .+.|++++||..|. ...+++.+|.+.|.+.+-.|.|+..+||.|.|+++|.++|.|+|.+|+|.+|.+
T Consensus 157 ~t~f~-g~~PI~~vsa~~G~------~~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 157 STGFD-GNSPIVEVSAADGY------FKEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred hcCcC-CCCceeEEecCCCc------cchhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 88886 56899999998872 223789999999999998999999999999999999999999999999999999
Q ss_pred ecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCcccccEEEEEEEEeecC
Q 013007 293 KVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKD 372 (451)
Q Consensus 293 ~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~~~~~~f~a~i~~l~~~ 372 (451)
+.|+.+.+...+ ..-+|++++++++++..|.+||++++.+...+..-+.|| +++.|+.+.+....-+.+.-+.--
T Consensus 230 ~ln~~iE~PAL~----e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~klleRg-i~~~pg~Lk~~~avl~~vepI~yf 304 (522)
T KOG0461|consen 230 RLNTEIEFPALN----EKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLLERG-ICGPPGTLKSTKAVLATVEPIQYF 304 (522)
T ss_pred ecCcEEeecccc----hhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHHhcc-ccCCCcccceeeeeeEeecchHHH
Confidence 999999984322 456899999999999999999999999988887788898 566677766655555544322111
Q ss_pred CCCcccccccCceeEEEEEeeeeeeeEEEeC----------------------CccccCCCCEEEEEEEeCCeEeeecC
Q 013007 373 EGGRHTAFFSNYRPQIYLRTADVTGKVELLG----------------------DVKMVMPGDNVNAAFELISPLPLQQG 429 (451)
Q Consensus 373 ~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~----------------------~~~~l~~g~~~~v~~~~~~p~~~~~~ 429 (451)
..+|.......+-++...+.+...... -|..+.++|...+-|+|++|+.+.++
T Consensus 305 ----r~~i~sk~K~Hi~VgheTVMa~~~ff~d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv~~P~~ 379 (522)
T KOG0461|consen 305 ----RKSINSKSKIHIAVGHETVMAECQFFKDTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPVFLPEY 379 (522)
T ss_pred ----hhhhhhcceEEEEehhhhhhhheEEeeccCCcccccccchhhhccccccChhhcCCchheeeeeeecccccCccc
Confidence 123333333333333334444443321 23345667778889999999988765
No 35
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-41 Score=327.33 Aligned_cols=271 Identities=29% Similarity=0.393 Sum_probs=220.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC---eeEEEEecCCh
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK---RHYAHVDCPGH 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~---~~i~iiDtPG~ 138 (451)
....+|++++.|+|||||||.++|+..+..... .......+|+...||+||||+........+.+ +.+++||||||
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 355789999999999999999999876541111 01112358999999999999988655544444 88999999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.||..++.+.+..||++||||||.+|+++||...+.++...|.. +|.|+||+|+...+ .+.++.++.+++.. +
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad--pe~V~~q~~~lF~~---~- 208 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD--PERVENQLFELFDI---P- 208 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC--HHHHHHHHHHHhcC---C-
Confidence 99999999999999999999999999999999999999999999 78999999998621 23355566665543 2
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
..+++.+||++| .++.++|+++.+.+|+|....++||++.++++|.+.++|.++.++|..|.+++||+|
T Consensus 209 -~~~~i~vSAK~G----------~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdkV 277 (650)
T KOG0462|consen 209 -PAEVIYVSAKTG----------LNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDKV 277 (650)
T ss_pred -ccceEEEEeccC----------ccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCEE
Confidence 347999999999 788999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEecccc-ccCCCCCeEEecCC
Q 013007 299 EVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLK-REDVQRGQVIAKPG 354 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 354 (451)
..+..+. .+.+++.+|.. ...++....|||. |..+.++. ..+...||++++..
T Consensus 278 ~~~~t~~--~yev~~vgvm~p~~~~~~~l~agqv-GyIi~~mr~~~ea~IGdTi~~~~ 332 (650)
T KOG0462|consen 278 QSAATGK--SYEVKVVGVMRPEMTPVVELDAGQV-GYIICNMRNVKEAQIGDTIAHKS 332 (650)
T ss_pred EEeecCc--ceEeEEeEEeccCceeeeeeccccc-ceeEecccccccccccceeeecc
Confidence 9887554 36677777754 3456666666643 33334455 46889999998654
No 36
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=8.4e-39 Score=332.87 Aligned_cols=267 Identities=28% Similarity=0.410 Sum_probs=218.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----CeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG~ 138 (451)
..+||+++||+|||||||+++|+.......... ...+.+|..++|+++|+|+......+.+. ...++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 368999999999999999999986432111111 12346789999999999999876655442 267899999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.+|..++.++++.+|++++|+|++++...|+.+++..+...++| +|+|+||+|+.+.. .+.+.+++.+ .+++.
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~--~~~~~~el~~---~lg~~- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLE-IIPVINKIDLPSAD--PERVKKEIEE---VIGLD- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCCccC--HHHHHHHHHH---HhCCC-
Confidence 99999999999999999999999999999999999888888998 77999999986421 1222223333 33432
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
..+++++||++| .|+++|+++|.+.+|+|..+.++||+++|++++.++++|++++|||.+|+|++||+|
T Consensus 154 -~~~vi~vSAktG----------~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v 222 (595)
T TIGR01393 154 -ASEAILASAKTG----------IGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKI 222 (595)
T ss_pred -cceEEEeeccCC----------CCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEE
Confidence 235899999999 899999999999999998889999999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEeecc---eeccEEecCCeEEEEeccccc-cCCCCCeEEecCC
Q 013007 299 EVLGLTQGPSLKTTVTGVEMFK---KILDRGEAGDNVGLLLRGLKR-EDVQRGQVIAKPG 354 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~~~---~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~~ 354 (451)
++.+.+ ...+|.+|..++ .++++|.||| +++.+++++. .+++.||+|++++
T Consensus 223 ~~~~~~----~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdtl~~~~ 277 (595)
T TIGR01393 223 RFMSTG----KEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDTITHVK 277 (595)
T ss_pred EEecCC----CeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCEEECCC
Confidence 998854 357888887654 7889999999 6666677654 7899999998765
No 37
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=9.1e-39 Score=332.91 Aligned_cols=268 Identities=28% Similarity=0.415 Sum_probs=218.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----CeeEEEEecCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----KRHYAHVDCPG 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----~~~i~iiDtPG 137 (451)
+..+||+++||+|||||||+++|+.......+.. ...+.+|..++|++||+|+......+.+. +..++||||||
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~-~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc-cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 4568999999999999999999986432111111 12356899999999999998876655442 57899999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|.+|..++.++++.+|++|+|||+++|++.|+.+++..+...++| +|+|+||+|+.+.. .+.+.+++.+ .++++
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~--~~~v~~ei~~---~lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLPAAD--PERVKQEIED---VIGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCCccc--HHHHHHHHHH---HhCCC
Confidence 999999999999999999999999999999999999988888999 77999999986421 1222233333 23442
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~ 297 (451)
..+++++||++| .|+.+|+++|.+.+|+|..+.++||++.|++++.++++|++++|||.+|+|++||+
T Consensus 158 --~~~vi~iSAktG----------~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~ 225 (600)
T PRK05433 158 --ASDAVLVSAKTG----------IGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKGDK 225 (600)
T ss_pred --cceEEEEecCCC----------CCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecCCE
Confidence 235899999999 89999999999999999888899999999999999999999999999999999999
Q ss_pred EEEecccCCCCceeEEEEEeec---ceeccEEecCCeEEEEecccc-ccCCCCCeEEecCC
Q 013007 298 VEVLGLTQGPSLKTTVTGVEMF---KKILDRGEAGDNVGLLLRGLK-REDVQRGQVIAKPG 354 (451)
Q Consensus 298 v~i~p~~~~~~~~~~V~~I~~~---~~~v~~a~aG~~v~l~l~~~~-~~~i~~G~vl~~~~ 354 (451)
|++.+.+ ...+|.+|... ..++++|.||| +++.+.+++ ..+++.||+|++.+
T Consensus 226 i~~~~~~----~~~~V~~i~~~~~~~~~v~~~~aGd-Ig~i~~~ik~~~~~~~Gdtl~~~~ 281 (600)
T PRK05433 226 IKMMSTG----KEYEVDEVGVFTPKMVPVDELSAGE-VGYIIAGIKDVRDARVGDTITLAK 281 (600)
T ss_pred EEEecCC----ceEEEEEeeccCCCceECcEEcCCC-EEEEecccccccccCCCCEEECCC
Confidence 9998854 35788888754 57899999999 555556664 36899999998765
No 38
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.8e-38 Score=302.98 Aligned_cols=268 Identities=27% Similarity=0.396 Sum_probs=219.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-----CCeeEEEEecC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCP 136 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtP 136 (451)
.+..+|++++.|.|||||||..+|+..+....... .....+|+.+.||+||+|+....+.+.+ +.+.+++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Re-m~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSERE-MRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHH-HHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 45678999999999999999999986532221111 1123579999999999999987655443 34778999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
||-||..++.++++.|.+++|||||++|++.||.....++...+.. +|.|+||+|+...+ .+.+++++++. +|+
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~Le-IiPViNKIDLP~Ad--pervk~eIe~~---iGi 158 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLE-IIPVLNKIDLPAAD--PERVKQEIEDI---IGI 158 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcE-EEEeeecccCCCCC--HHHHHHHHHHH---hCC
Confidence 9999999999999999999999999999999999999999999998 88999999998721 12345555554 356
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
+. ...+.+||++| .|++++|++|.+.+|+|..+.++|++..|+|+|.++++|.|+..||..|++++||
T Consensus 159 d~--~dav~~SAKtG----------~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~gd 226 (603)
T COG0481 159 DA--SDAVLVSAKTG----------IGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKGD 226 (603)
T ss_pred Cc--chheeEecccC----------CCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCCC
Confidence 43 45788999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEee---cceeccEEecCCeEEEEeccccc-cCCCCCeEEecC
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEM---FKKILDRGEAGDNVGLLLRGLKR-EDVQRGQVIAKP 353 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~---~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl~~~ 353 (451)
++.++..+. +-.|..+-. ...+.+...|||. |....+++. .+.+.||+++..
T Consensus 227 ki~~m~tg~----~y~V~evGvftP~~~~~~~L~aGeV-G~~~a~iK~v~d~~VGDTiT~~ 282 (603)
T COG0481 227 KIRMMSTGK----EYEVDEVGIFTPKMVKVDELKAGEV-GYIIAGIKDVRDARVGDTITLA 282 (603)
T ss_pred EEEEEecCC----EEEEEEEeeccCCccccccccCCce-eEEEEeeeecccCcccceEecc
Confidence 999987543 455555543 3567889999975 555555654 689999999843
No 39
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-38 Score=288.00 Aligned_cols=353 Identities=27% Similarity=0.432 Sum_probs=276.9
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEE-----e------------
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE-----Y------------ 123 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~-----~------------ 123 (451)
.++..+||+.+||+.|||||++.++.+.. +-.+..|-+|.+|+...+.. +
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAiSGv~-------------TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~ 100 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAISGVH-------------TVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYR 100 (466)
T ss_pred hheeeeeecceeccccCcceeeeeeccce-------------EEEehhhhhcceeEEeccccceEEecCCCCCCCcchhh
Confidence 45668999999999999999999997541 12334455556666553321 0
Q ss_pred ------------ee---C-----CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCC
Q 013007 124 ------------ET---A-----KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVP 182 (451)
Q Consensus 124 ------------~~---~-----~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip 182 (451)
+. . -+++.|+|+|||.-++.+|+.+++..|+++|+|.+++ .+++||.||+.....+..+
T Consensus 101 s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lk 180 (466)
T KOG0466|consen 101 SFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLK 180 (466)
T ss_pred ccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhc
Confidence 00 0 1467899999999999999999999999999999987 6899999999999999999
Q ss_pred eEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCC
Q 013007 183 SLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQL 262 (451)
Q Consensus 183 ~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~ 262 (451)
+++++-||+|++.++...+.. +++..|+..... +..|++|+||.-. ++++.+.++|...+|.|.|+.
T Consensus 181 hiiilQNKiDli~e~~A~eq~-e~I~kFi~~t~a--e~aPiiPisAQlk----------yNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQALEQH-EQIQKFIQGTVA--EGAPIIPISAQLK----------YNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred eEEEEechhhhhhHHHHHHHH-HHHHHHHhcccc--CCCceeeehhhhc----------cChHHHHHHHHhcCCCCcccc
Confidence 999999999999865555544 367777776544 6789999999876 999999999999999999999
Q ss_pred CCCeeEEEEEEEeeCC--------CceEEEEEEEeeeeecCCEEEEeccc-----CC----CCceeEEEEEeecceeccE
Q 013007 263 DKPFLMPIEDVFSIQG--------RGTVATGRVEQGTIKVGEEVEVLGLT-----QG----PSLKTTVTGVEMFKKILDR 325 (451)
Q Consensus 263 ~~p~~~~v~~~~~~~~--------~G~v~~g~v~sG~l~~gd~v~i~p~~-----~~----~~~~~~V~~I~~~~~~v~~ 325 (451)
..|.+|.|.++|.++. .|.|+.|.+..|.|++||++.+.|.- .+ .++-.+|.|+...+.+++.
T Consensus 248 ~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~ 327 (466)
T KOG0466|consen 248 TSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFAEQNDLQF 327 (466)
T ss_pred CCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHhhhcccee
Confidence 9999999999998763 58899999999999999999999841 11 1223456666667889999
Q ss_pred EecCCeEEEEec---cccccCCCCCeEEecCCCc-ccccEEEEEEEEeecCCCC---------cccccccCceeEEEEEe
Q 013007 326 GEAGDNVGLLLR---GLKREDVQRGQVIAKPGSV-KTYKKFEAEIYVLTKDEGG---------RHTAFFSNYRPQIYLRT 392 (451)
Q Consensus 326 a~aG~~v~l~l~---~~~~~~i~~G~vl~~~~~~-~~~~~f~a~i~~l~~~~~~---------~~~~i~~g~~~~~~~~~ 392 (451)
|.||..+++.-+ .+.+.|-..|++|...+.+ ..+.+++...++|.+..|. +...+.+|-..++.+++
T Consensus 328 AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrllgvrt~~~~k~~kv~kL~k~E~lmvNIGS 407 (466)
T KOG0466|consen 328 AVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLLGVRTKGDKKQAKVSKLVKNEILMVNIGS 407 (466)
T ss_pred ecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHhccccccccccchhhhcccCcEEEEEecc
Confidence 999999998633 1223455568888887764 4578888888887754332 12346677778888888
Q ss_pred eeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEee----CCcEEEEEEEEe
Q 013007 393 ADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALRE----GGRTVGAGVVSK 448 (451)
Q Consensus 393 ~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~----~~~tig~G~I~~ 448 (451)
...-+++..++. | .+++.+..|+|.+.|.++.+.+ +||.||+|.|.+
T Consensus 408 ~sTG~~v~~vk~-------d--~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGwg~I~~ 458 (466)
T KOG0466|consen 408 TSTGGRVSAVKA-------D--MAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGWGQIKA 458 (466)
T ss_pred cccCceEEEEec-------c--eeeeEecCchhcccchhhhhhhhhhhheEEecceeEeC
Confidence 888888877732 2 5788899999999999998843 499999999974
No 40
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=2e-35 Score=302.97 Aligned_cols=273 Identities=25% Similarity=0.362 Sum_probs=215.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccce---eeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
...+||+++||+|+|||||+++|+.. ....|.... .....+|..+.|++||+|+......+++.+..+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 34689999999999999999999742 222232211 112246889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHHHHH------
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMELR------ 208 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~~~~------ 208 (451)
||.+|...+..+++.+|++|+|+|+.+++..+++..+..+...++| +++++||+|+.. ..+.++++++.+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 9999999999999999999999999999999999999999999999 678999999875 2222222221100
Q ss_pred -------------------------------------------HHHHhc---------------------------CCCC
Q 013007 209 -------------------------------------------ELLSFY---------------------------KFPG 218 (451)
Q Consensus 209 -------------------------------------------~~l~~~---------------------------~~~~ 218 (451)
++++++ -..+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~ 246 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAG 246 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcC
Confidence 011111 0112
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC---------CCCCeeEEEEEEE---eeCCCceEEEEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVF---SIQGRGTVATGR 286 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------~~~p~~~~v~~~~---~~~~~G~v~~g~ 286 (451)
..+||++.||+++ .|+.+||+.+.+++|+|... .+.+|...|+++. ..+++|++++.|
T Consensus 247 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvR 316 (526)
T PRK00741 247 ELTPVFFGSALNN----------FGVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVR 316 (526)
T ss_pred CeEEEEEeecccC----------cCHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEE
Confidence 3479999999998 89999999999999988531 2467999999998 456899999999
Q ss_pred EEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 287 VEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 287 v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
|.||+++.||.|++...+ .+.++..++. .+.++++|.|||++++. +..+++.||+|+..+
T Consensus 317 V~sG~l~~g~~v~~~~~~----k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~----~l~~~~~GDTL~~~~ 380 (526)
T PRK00741 317 VCSGKFEKGMKVRHVRTG----KDVRISNALTFMAQDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 380 (526)
T ss_pred EeccEECCCCEEEeccCC----ceEEecceEEEecCCceECceeCCCCEEEEE----CCCCCccCCCccCCC
Confidence 999999999999876532 3577777653 35789999999999985 566899999998765
No 41
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=3e-35 Score=315.21 Aligned_cols=284 Identities=28% Similarity=0.378 Sum_probs=214.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee----CCeeEEEEecCC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET----AKRHYAHVDCPG 137 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~iiDtPG 137 (451)
....+||+++||+|||||||+++|+.......+......+.+|..++|++||+|++.+...+.+ .+..++|+||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 4557899999999999999999997542211111111234689999999999999987554433 467899999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC------h---HHHHHHHHHHHH
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------D---EELLELVEMELR 208 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~------~---~~~~~~~~~~~~ 208 (451)
|.+|..++.++++.+|++++|||+..|+..||+.++..+...++| .|+++||||+.. . .+.+..+.+++.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~ 175 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVN 175 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhhcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999889999 468999999862 1 223333334455
Q ss_pred HHHHhcC---------CCCCCCCeeeccccccccCCCccc-----ch-------------------hhHHHHHHHHHhhC
Q 013007 209 ELLSFYK---------FPGDEIPIIRGSATSALQGKNEEI-----GK-------------------KAILKLMDAVDEYI 255 (451)
Q Consensus 209 ~~l~~~~---------~~~~~~pvi~~Sa~~g~~~~~~~~-----~~-------------------~~i~~Ll~~l~~~l 255 (451)
.+++.+. +.+.+-.+++.||+.++.-..... .. .-+..|++.+..++
T Consensus 176 ~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~l 255 (731)
T PRK07560 176 KLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHL 255 (731)
T ss_pred HHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhC
Confidence 5555432 122234577788877643210000 00 00126899999999
Q ss_pred CCCCc-------------------------CCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCce
Q 013007 256 PDPER-------------------------QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLK 310 (451)
Q Consensus 256 p~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~ 310 (451)
|+|.. +.+.|+.+.|++++.++++|+++++||.+|+|++||.|++.+.+ ..
T Consensus 256 PsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~----~~ 331 (731)
T PRK07560 256 PNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK----KK 331 (731)
T ss_pred CChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC----Cc
Confidence 98842 23568999999999999999999999999999999999987643 35
Q ss_pred eEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 311 TTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 311 ~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
.+|..|+.. ..++++|.|||++++. |+ .++.+||+|+.+.
T Consensus 332 ~~v~~i~~~~g~~~~~v~~a~AGdIv~i~--gl--~~~~~GdtL~~~~ 375 (731)
T PRK07560 332 NRVQQVGIYMGPEREEVEEIPAGNIAAVT--GL--KDARAGETVVSVE 375 (731)
T ss_pred eEeheehhhhcCCCceeeeECCCCEEEEE--cc--cccccCCEEeCCC
Confidence 788888654 5789999999999884 44 4678999998664
No 42
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.6e-35 Score=265.31 Aligned_cols=194 Identities=77% Similarity=1.143 Sum_probs=170.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
++++|+++||+|+|||||+++|+......|+......+.+|..++|++||+|++.....|++++.+++|+|||||.+|..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 36899999999999999999999877666665543345689999999999999999999998899999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
++..++..+|++++|||+..|+..|+++++.++...++|++|+++||||+..+++.++.+++++.++++.++++.+++|+
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~i 160 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPI 160 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeE
Confidence 99999999999999999999999999999999999999888899999999866667777888999999999998788999
Q ss_pred eeccccccccCCCcccchh-hHHHHHHHHHhhCCCC
Q 013007 224 IRGSATSALQGKNEEIGKK-AILKLMDAVDEYIPDP 258 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~~lp~~ 258 (451)
+|+||++|.+..+. ..|+ ++..|+++|++..|+|
T Consensus 161 ipiSa~~g~n~~~~-~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 161 VRGSALKALEGDDP-NKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEeeCccccCCCCC-CcchhcHhHHHHHHHhCCCCC
Confidence 99999998776432 2333 5899999999877654
No 43
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=1.5e-34 Score=308.00 Aligned_cols=270 Identities=26% Similarity=0.382 Sum_probs=212.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
...+||+++||+|+|||||+++|+.... ..|.... ..+.+|..+.|++||+|++.....+.+.+++++|+|||||.
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~-~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccC-CcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 4478999999999999999999975332 2222221 13578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH--------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL-------- 211 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l-------- 211 (451)
+|..++.++++.+|++++|||+.+|+..||++++..+...++|. |+++||+|+.+.. +..+.+++++.+
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ 163 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPR-IAFVNKMDRTGAD--FYRVVEQIKDRLGANPVPIQ 163 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCE-EEEEECCCCCCCC--HHHHHHHHHHHhCCCeeeEE
Confidence 99999999999999999999999999999999999999999995 5899999987521 111111111111
Q ss_pred ----------------------------------------------------------------Hhc-------------
Q 013007 212 ----------------------------------------------------------------SFY------------- 214 (451)
Q Consensus 212 ----------------------------------------------------------------~~~------------- 214 (451)
+.+
T Consensus 164 ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~ 243 (693)
T PRK00007 164 LPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKA 243 (693)
T ss_pred ecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHH
Confidence 110
Q ss_pred -----CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc--------------------CCCCCeeEE
Q 013007 215 -----KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMP 269 (451)
Q Consensus 215 -----~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~~~~ 269 (451)
...+..+|++..||.++ .|+..||+.+.+++|+|.. +.++|+.++
T Consensus 244 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 313 (693)
T PRK00007 244 ALRKATIANEIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSAL 313 (693)
T ss_pred HHHHHHhcCcEEEEEecccccC----------cCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEE
Confidence 01112356666777666 7899999999999998742 236789999
Q ss_pred EEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCC
Q 013007 270 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 270 v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
|+++..+++.|.++++||.||+|++||+|+.... ....+|.+|... ..++++|.|||++++. |+ .+++
T Consensus 314 VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~----~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~ 385 (693)
T PRK00007 314 AFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTK----GKKERIGRILQMHANKREEIKEVRAGDIAAAV--GL--KDTT 385 (693)
T ss_pred EEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCC----CceeEeceeEEeccCCcccccccCCCcEEEEe--CC--ccCC
Confidence 9999999999999999999999999999986432 235677787643 4789999999999884 44 3678
Q ss_pred CCeEEecCC
Q 013007 346 RGQVIAKPG 354 (451)
Q Consensus 346 ~G~vl~~~~ 354 (451)
.||+|++++
T Consensus 386 ~GdtL~~~~ 394 (693)
T PRK00007 386 TGDTLCDEK 394 (693)
T ss_pred cCCEeeCCC
Confidence 999998654
No 44
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-34 Score=302.12 Aligned_cols=273 Identities=30% Similarity=0.429 Sum_probs=218.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPG 137 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG 137 (451)
....+||+++||+|||||||..+|+-. ....|....+ ...+|..+.|++||+|+..+...+.+.+ +.++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g-~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG-AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC-CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 345789999999999999999999743 2333443322 3468999999999999999999888885 9999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH--------------------
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-------------------- 197 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~-------------------- 197 (451)
|-||..++.++++.+|+|++|+||.+|+++||+..|+++...++|++ +++||||+...+
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~ 164 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRLGADFYLVVEQLKERLGANPVPVQ 164 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECccccccChhhhHHHHHHHhCCCceeee
Confidence 99999999999999999999999999999999999999999999965 899999986310
Q ss_pred -----------------------------------HHHHH----HHHHH--------HHHHHhcCC--------------
Q 013007 198 -----------------------------------ELLEL----VEMEL--------RELLSFYKF-------------- 216 (451)
Q Consensus 198 -----------------------------------~~~~~----~~~~~--------~~~l~~~~~-------------- 216 (451)
..... ....+ +++++.+--
T Consensus 165 ~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~ 244 (697)
T COG0480 165 LPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALR 244 (697)
T ss_pred ccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHH
Confidence 00000 00001 123333211
Q ss_pred ----CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc--------------------CCCCCeeEEEEE
Q 013007 217 ----PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLDKPFLMPIED 272 (451)
Q Consensus 217 ----~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~~p~~~~v~~ 272 (451)
....+|+++.||.++ .+++.||+++.+++|.|.. +.++|+.+.+++
T Consensus 245 ~~~~~~~~~pvl~gsa~kn----------~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfK 314 (697)
T COG0480 245 KGTIAGKIVPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFK 314 (697)
T ss_pred HhhhccceeeEEeeecccC----------CcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEE
Confidence 112578888888777 8899999999999998732 237999999999
Q ss_pred EEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCe
Q 013007 273 VFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQ 348 (451)
Q Consensus 273 ~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~ 348 (451)
+..++..|.+.++||.||+|+.||.+++... ..+.+|..|... +.+++++.|||++++. |+ .+...||
T Consensus 315 i~~d~~~g~l~~~RvysGtl~~G~~v~n~~~----~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~--Gl--~~~~tGd 386 (697)
T COG0480 315 IMTDPFVGKLTFVRVYSGTLKSGSEVLNSTK----GKKERVGRLLLMHGNEREEVDEVPAGDIVALV--GL--KDATTGD 386 (697)
T ss_pred eEecCCCCeEEEEEEeccEEcCCCEEEeCCC----CccEEEEEEEEccCCceeecccccCccEEEEE--cc--cccccCC
Confidence 9999999999999999999999999887543 246889888643 4789999999999885 44 4678999
Q ss_pred EEecCC
Q 013007 349 VIAKPG 354 (451)
Q Consensus 349 vl~~~~ 354 (451)
++|+.+
T Consensus 387 Tl~~~~ 392 (697)
T COG0480 387 TLCDEN 392 (697)
T ss_pred eeecCC
Confidence 999766
No 45
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.9e-34 Score=294.50 Aligned_cols=273 Identities=24% Similarity=0.351 Sum_probs=215.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCcccee---eeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAI---AFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCP 136 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~~---~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtP 136 (451)
...+||+++||+|+|||||+++|+.. ....|..... ....+|..+.|++||+|+......+++.+..++|||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45689999999999999999998632 2223322111 12357899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHHHHH------
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMELR------ 208 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~~~~------ 208 (451)
||.+|...+..++..+|++|+|||+.+++..++..++..+...++| +++++||+|+.. ..+.++.+++.+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999999988999 678999999863 2222222221100
Q ss_pred --------------------------------------------------------------HHHHhc--------CCCC
Q 013007 209 --------------------------------------------------------------ELLSFY--------KFPG 218 (451)
Q Consensus 209 --------------------------------------------------------------~~l~~~--------~~~~ 218 (451)
++++.. -..+
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 011110 0123
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC---------CCCCeeEEEEEEEe--e-CCCceEEEEE
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ---------LDKPFLMPIEDVFS--I-QGRGTVATGR 286 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~---------~~~p~~~~v~~~~~--~-~~~G~v~~g~ 286 (451)
..+|+++.||+++ .|+.+||+.+..++|+|... .+++|...|+++.. + +++|++++.|
T Consensus 248 ~~~PV~~GSA~~n----------~Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGN----------FGVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccC----------ccHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 4578899999988 89999999999999988532 25689999999986 6 5899999999
Q ss_pred EEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 287 VEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 287 v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
|.||+++.|++|+....+ .+.++..++. .+.++++|.|||++++. +..+++.||+||+.+
T Consensus 318 V~sG~l~~g~~v~~~~~~----k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~----~~~~~~~GDtl~~~~ 381 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRTG----KDVVISDALTFMAGDREHVEEAYAGDIIGLH----NHGTIQIGDTFTQGE 381 (527)
T ss_pred EeeeEEcCCCEEEecCCC----CcEEecchhhhhcCCceEcceeCCCCEEEEE----CCCCcccCCEecCCC
Confidence 999999999999875532 4578887754 35789999999999885 566899999998754
No 46
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=3.3e-34 Score=305.72 Aligned_cols=270 Identities=26% Similarity=0.372 Sum_probs=213.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
...+||+++||+|+|||||+++|+.... ..|.... ..+.+|..++|++||+|++.....+++.+.+++|+|||||.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~-~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHD-GAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccC-CccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3468999999999999999999975422 1222211 13578999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH-------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS------- 212 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~------- 212 (451)
+|..++..+++.+|++++|||+.+|+..|+++++..+...++| +|+++||||+...+ ++.+.+++.+.+.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~--~~~~~~~i~~~l~~~~~~~~ 161 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP-RIVFVNKMDRIGAD--FFRSVEQIKDRLGANAVPIQ 161 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHhCCCceeEE
Confidence 9999999999999999999999999999999999999999999 56899999998521 1111112211111
Q ss_pred -----------------------------------------------------------------hc-------------
Q 013007 213 -----------------------------------------------------------------FY------------- 214 (451)
Q Consensus 213 -----------------------------------------------------------------~~------------- 214 (451)
++
T Consensus 162 iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~ 241 (691)
T PRK12739 162 LPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKA 241 (691)
T ss_pred ecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHH
Confidence 00
Q ss_pred -----CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc-------------------CCCCCeeEEE
Q 013007 215 -----KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-------------------QLDKPFLMPI 270 (451)
Q Consensus 215 -----~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~-------------------~~~~p~~~~v 270 (451)
.....-+|++..||.++ .|+..||+.|..++|+|.. +.+.|+.+.|
T Consensus 242 ~l~~~~~~~~~~Pv~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~V 311 (691)
T PRK12739 242 AIRKATINMEFFPVLCGSAFKN----------KGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALA 311 (691)
T ss_pred HHHHHHHcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEE
Confidence 00112257777788777 8899999999999998742 3467999999
Q ss_pred EEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCC
Q 013007 271 EDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQR 346 (451)
Q Consensus 271 ~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~ 346 (451)
++++.++++|.++++||.||+|++||.|+....+ ...+|.+|... ..+++++.|||++++. |+ .+++.
T Consensus 312 fK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~ 383 (691)
T PRK12739 312 FKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKG----KKERIGRLLQMHANKREEIKEVYAGDIAAAV--GL--KDTTT 383 (691)
T ss_pred EEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCC----ceEEecceEEEecCCcccccccCCCCEEEEe--CC--CcccC
Confidence 9999999999999999999999999999864322 35677777532 4789999999999885 44 35789
Q ss_pred CeEEecCC
Q 013007 347 GQVIAKPG 354 (451)
Q Consensus 347 G~vl~~~~ 354 (451)
||+|++.+
T Consensus 384 gdtl~~~~ 391 (691)
T PRK12739 384 GDTLCDEK 391 (691)
T ss_pred CCEEeCCC
Confidence 99998654
No 47
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.5e-33 Score=298.25 Aligned_cols=247 Identities=32% Similarity=0.376 Sum_probs=199.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|+++||+|||||||+++|.+... .....+|+|.+.....+.+.+..++|||||||++|..
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v----------------~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~ 352 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNV----------------AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA 352 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCc----------------cccccCceeeeccEEEEEECCEEEEEEECCCCccchh
Confidence 447999999999999999999974311 1112357888887777888888999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHH---HHHhcCCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE---LLSFYKFPGDE 220 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~---~l~~~~~~~~~ 220 (451)
++.+++..+|++|||||+++|+.+||.+++..+...++| +||++||||+.+.. .+.+..++.+ +.+.+ +..
T Consensus 353 m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~--~e~V~~eL~~~~~~~e~~---g~~ 426 (787)
T PRK05306 353 MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVP-IIVAINKIDKPGAN--PDRVKQELSEYGLVPEEW---GGD 426 (787)
T ss_pred HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCc-EEEEEECccccccC--HHHHHHHHHHhcccHHHh---CCC
Confidence 999999999999999999999999999999999999999 78999999996521 1122222221 12222 235
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC--CCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEE
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI--PDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 298 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v 298 (451)
+|++++||++| .|+++|+++|.... .....+.+.|+++.|++++.++|+|++++++|.+|+|++||.|
T Consensus 427 vp~vpvSAktG----------~GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~v 496 (787)
T PRK05306 427 TIFVPVSAKTG----------EGIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIV 496 (787)
T ss_pred ceEEEEeCCCC----------CCchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEE
Confidence 89999999999 88999999886421 1234456789999999999999999999999999999999999
Q ss_pred EEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEeccccccCC-CCCeEEec
Q 013007 299 EVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLKREDV-QRGQVIAK 352 (451)
Q Consensus 299 ~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~~ 352 (451)
.+++ ...+|++|+. ++.++++|.||+.|.+. |+ .++ ..||+|+.
T Consensus 497 v~g~------~~gkVr~m~~~~~~~v~~A~pGd~V~I~--gl--~~~p~~Gd~l~~ 542 (787)
T PRK05306 497 VAGT------TYGRVRAMVDDNGKRVKEAGPSTPVEIL--GL--SGVPQAGDEFVV 542 (787)
T ss_pred EECC------cEEEEEEEECCCCCCCCEEcCCCeEEEe--CC--CCCCCCCCEEEE
Confidence 9864 3579999987 46899999999999885 43 355 78999983
No 48
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.8e-33 Score=289.03 Aligned_cols=244 Identities=31% Similarity=0.375 Sum_probs=195.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCe-eEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~~~~ 143 (451)
..+|+++||+|||||||+++|.+... .....+|+|.+.....+.+.+. .++|||||||++|..
T Consensus 87 ~p~V~I~Ghvd~GKTSLl~~l~~~~v----------------~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~ 150 (587)
T TIGR00487 87 PPVVTIMGHVDHGKTSLLDSIRKTKV----------------AQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS 150 (587)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhCCc----------------ccccCCceeecceEEEEEECCCcEEEEEECCCCcchhh
Confidence 36899999999999999999974311 1112347888877666666544 899999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC----CC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP----GD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 219 (451)
.+.+++..+|++++|+|+++|..+||.+++..+...++| +|+++||+|+.+.. .+.+.+.+ ..+++. +.
T Consensus 151 ~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~--~e~v~~~L----~~~g~~~~~~~~ 223 (587)
T TIGR00487 151 MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVP-IIVAINKIDKPEAN--PDRVKQEL----SEYGLVPEDWGG 223 (587)
T ss_pred HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcccccCC--HHHHHHHH----HHhhhhHHhcCC
Confidence 999999999999999999999999999999999999999 78999999996521 11122222 222211 12
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh--CCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCE
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY--IPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEE 297 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~--lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~ 297 (451)
..+++++||++| .|+++|+++|... ++....+.+.|+++.|++++.++|+|++++|+|.+|+|++||.
T Consensus 224 ~~~~v~iSAktG----------eGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~ 293 (587)
T TIGR00487 224 DTIFVPVSALTG----------DGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDI 293 (587)
T ss_pred CceEEEEECCCC----------CChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCE
Confidence 468999999999 8999999988542 2333445679999999999999999999999999999999999
Q ss_pred EEEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEeccccccCC-CCCeEEe
Q 013007 298 VEVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLKREDV-QRGQVIA 351 (451)
Q Consensus 298 v~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~~~~i-~~G~vl~ 351 (451)
+.++|. ..+|++|+. +++.+++|.||+.|.+. |++ ++ ..||.+.
T Consensus 294 iv~~~~------~~kVr~l~~~~g~~v~~a~~g~~v~i~--Gl~--~~p~aGd~~~ 339 (587)
T TIGR00487 294 VVVGAA------YGRVRAMIDENGKSVKEAGPSKPVEIL--GLS--DVPAAGDEFI 339 (587)
T ss_pred EEECCC------ccEEEEEECCCCCCCCEECCCCEEEEe--CCC--CCCCCCCEEE
Confidence 998762 378999987 67899999999999875 554 33 6899887
No 49
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=2.5e-33 Score=299.14 Aligned_cols=272 Identities=28% Similarity=0.399 Sum_probs=211.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHh---cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~---~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
...+||+++||+|+|||||+++|+..... .|+... ..+.+|..+.|+++|+|++.....+++.+.+++|||||||.
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~-g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHD-GAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccC-CccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 34689999999999999999999754321 122111 23568999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH--HHHHHHHHHH----------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE--ELLELVEMEL---------- 207 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~--~~~~~~~~~~---------- 207 (451)
+|..++..+++.+|++++|+|+.+|...++.+++..+...++| +++++||+|+.... ...+.+.+.+
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVP-RIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 9999999999999999999999999999999999999999999 55899999987521 1111111100
Q ss_pred ---------------------------------------------------------HHHHHhc----------------
Q 013007 208 ---------------------------------------------------------RELLSFY---------------- 214 (451)
Q Consensus 208 ---------------------------------------------------------~~~l~~~---------------- 214 (451)
+++++++
T Consensus 166 is~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 166 IGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred cccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0111111
Q ss_pred --CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc-------------------CCCCCeeEEEEEE
Q 013007 215 --KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-------------------QLDKPFLMPIEDV 273 (451)
Q Consensus 215 --~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~-------------------~~~~p~~~~v~~~ 273 (451)
-..+..+|++..||.++ .|+..|++.|..++|+|.. +.++||.++|+++
T Consensus 246 ~~~~~~~~~PV~~gSa~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 315 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKN----------KGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKV 315 (689)
T ss_pred HHHhcCCEEEEEeccccCC----------ccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEe
Confidence 01112356777777766 7899999999999998742 2367899999999
Q ss_pred EeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeE
Q 013007 274 FSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQV 349 (451)
Q Consensus 274 ~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~v 349 (451)
+.+++.|.++++||.||+|+.||.|+....+ ...+|..|... ..++++|.|||++++. |+ .++..||+
T Consensus 316 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~----~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdt 387 (689)
T TIGR00484 316 ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKN----KKERVGRLVKMHANNREEIKEVRAGDICAAI--GL--KDTTTGDT 387 (689)
T ss_pred eecCCCCeEEEEEEEEeEEcCCCEEEeCCCC----ceEEecceEEeecCCcccccccCCCCEEEEc--CC--CCCCCCCE
Confidence 9999999999999999999999999864322 34567777543 4789999999999884 44 36789999
Q ss_pred EecCC
Q 013007 350 IAKPG 354 (451)
Q Consensus 350 l~~~~ 354 (451)
|++++
T Consensus 388 l~~~~ 392 (689)
T TIGR00484 388 LCDPK 392 (689)
T ss_pred EeCCC
Confidence 98654
No 50
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-34 Score=270.29 Aligned_cols=272 Identities=26% Similarity=0.389 Sum_probs=214.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHH---HHHHhcCcccee---eeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAIT---KVLAEEGKAKAI---AFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~---~~~~~~g~~~~~---~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
..++++||.|+|+|||||.+.|+ +.+...|....+ .....|..+.|++|||++..+.+.|++.++.++|+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 45799999999999999999986 344444543332 123468899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHHHH--------
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMEL-------- 207 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~~~-------- 207 (451)
|+||...+++.+..+|.|++||||..|+.+||+..+..++..++| ++-++||+|... +-++++++++.+
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pit 169 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLELLDEIEEELGIQCAPIT 169 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHHHHHHHHHHhCcceeccc
Confidence 999999999999999999999999999999999999999999999 889999999874 323333333211
Q ss_pred ---------------------------------------------------------H---HHHHhc--------CCCCC
Q 013007 208 ---------------------------------------------------------R---ELLSFY--------KFPGD 219 (451)
Q Consensus 208 ---------------------------------------------------------~---~~l~~~--------~~~~~ 219 (451)
. +++..- -+.++
T Consensus 170 WPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~ 249 (528)
T COG4108 170 WPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGE 249 (528)
T ss_pred ccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCC
Confidence 0 111110 12345
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc---------CCCCCeeEEEEEE---EeeCCCceEEEEEE
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER---------QLDKPFLMPIEDV---FSIQGRGTVATGRV 287 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~---------~~~~p~~~~v~~~---~~~~~~G~v~~g~v 287 (451)
..|||+.||+.+ .|++.+|+.+.++.|+|.. ..+..|...|+++ ...+.+-++++-||
T Consensus 250 ~TPVFFGSAl~N----------FGV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv 319 (528)
T COG4108 250 LTPVFFGSALGN----------FGVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRV 319 (528)
T ss_pred ccceEehhhhhc----------cCHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEe
Confidence 689999999998 9999999999999998753 1244455555554 34557899999999
Q ss_pred EeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 288 EQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 288 ~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
.||.+..|+++.....+ ..+++..-+. .++.+++|+|||++|+. ....++.||+++..+
T Consensus 320 ~SGkferGMkv~h~rtG----K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~----nhG~~~IGDT~t~Ge 382 (528)
T COG4108 320 CSGKFERGMKVTHVRTG----KDVKLSDALTFMAQDRETVEEAYAGDIIGLH----NHGTIQIGDTFTEGE 382 (528)
T ss_pred ccccccCCceeeeeecC----CceEecchHhhhhhhhhhhhhccCCCeEecc----CCCceeecceeecCc
Confidence 99999999999987644 3456655443 36889999999999996 445689999999764
No 51
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-32 Score=292.31 Aligned_cols=271 Identities=30% Similarity=0.445 Sum_probs=213.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
..+||+++||+|+|||||+++|+.... ..|..... .+.+|..+.|+++|+|+......+.+.+..++|||||||.+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~-~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG-TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC-cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 468999999999999999999985422 11221111 23578899999999999998888888999999999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh--HHHHHHHHHHH-----------
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMEL----------- 207 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~----------- 207 (451)
|...+..+++.+|++++|+|++++...++..++..+...++| +++++||+|+... ...++.+++.+
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 999999999999999999999999999999999999999999 5689999998752 11122211100
Q ss_pred ---------------------------------------------------------HHHHHhcC---------------
Q 013007 208 ---------------------------------------------------------RELLSFYK--------------- 215 (451)
Q Consensus 208 ---------------------------------------------------------~~~l~~~~--------------- 215 (451)
+++++.+-
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 11111110
Q ss_pred ---CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc------------------CCCCCeeEEEEEEE
Q 013007 216 ---FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER------------------QLDKPFLMPIEDVF 274 (451)
Q Consensus 216 ---~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~------------------~~~~p~~~~v~~~~ 274 (451)
..+.-+|++.+||+++ .|+..|++.|..++|.|.. +.++|+.+.|++++
T Consensus 245 ~~~~~~~~~PV~~gSA~~~----------~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~ 314 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKN----------IGIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQ 314 (687)
T ss_pred HHHHhCCEEEEEecccCcC----------ccHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEee
Confidence 0112478899999998 9999999999999998852 34679999999999
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEE
Q 013007 275 SIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 275 ~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
.++++|.++++||.+|+|++||+|++.+.+ ...+|..|... ..++++|.|||++++. |+ .++..||+|
T Consensus 315 ~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~----~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~--gl--~~~~~gdtl 386 (687)
T PRK13351 315 YDPYAGKLTYLRVYSGTLRAGSQLYNGTGG----KREKVGRLFRLQGNKREEVDRAKAGDIVAVA--GL--KELETGDTL 386 (687)
T ss_pred ecCCCceEEEEEEeEEEEcCCCEEEeCCCC----CceEeeeEEEEccCCeeECCccCCCCEEEEE--Cc--ccCccCCEE
Confidence 999999999999999999999999987643 24566666433 5789999999999774 44 467789999
Q ss_pred ecCC
Q 013007 351 AKPG 354 (451)
Q Consensus 351 ~~~~ 354 (451)
++.+
T Consensus 387 ~~~~ 390 (687)
T PRK13351 387 HDSA 390 (687)
T ss_pred eCCC
Confidence 8654
No 52
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=4.8e-32 Score=289.74 Aligned_cols=285 Identities=29% Similarity=0.395 Sum_probs=208.0
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEE----eeeCCeeEEEEecC
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVE----YETAKRHYAHVDCP 136 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~----~~~~~~~i~iiDtP 136 (451)
..+..+||+++||+|+|||||+++|+.......+........+|..++|++||+|+...... +++.+.+++|||||
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP 94 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP 94 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence 34456899999999999999999997542111111111224578999999999999876443 56678899999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh------H---HHHHHHHHHH
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED------E---ELLELVEMEL 207 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~------~---~~~~~~~~~~ 207 (451)
||.+|..++..++..+|++++|+|+.+|+..++.+++..+...++|. ++++||+|+... + +.+..+...+
T Consensus 95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~-ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v 173 (720)
T TIGR00490 95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKP-VLFINKVDRLINELKLTPQELQERFIKIITEV 173 (720)
T ss_pred CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCE-EEEEEChhcccchhcCCHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999998889995 589999998631 1 1222222233
Q ss_pred HHHHHhc---------CCCCCCCCeeeccccccccC---------CCcc--------cchhh-------HHHHHHHHHhh
Q 013007 208 RELLSFY---------KFPGDEIPIIRGSATSALQG---------KNEE--------IGKKA-------ILKLMDAVDEY 254 (451)
Q Consensus 208 ~~~l~~~---------~~~~~~~pvi~~Sa~~g~~~---------~~~~--------~~~~~-------i~~Ll~~l~~~ 254 (451)
..++... .+...+.++...|++.+|.- ...+ ..... +..|++.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~ 253 (720)
T TIGR00490 174 NKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRH 253 (720)
T ss_pred HhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHh
Confidence 3333221 01111223444555544210 0000 00011 46789999999
Q ss_pred CCCCCc-------------------------CCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCc
Q 013007 255 IPDPER-------------------------QLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSL 309 (451)
Q Consensus 255 lp~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~ 309 (451)
+|+|.. +.++|+.+.|++++.+++.|++++|||.||+|++||.|++.+.+ .
T Consensus 254 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~----~ 329 (720)
T TIGR00490 254 LPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK----A 329 (720)
T ss_pred CCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC----C
Confidence 998841 22568999999999999999999999999999999999997743 3
Q ss_pred eeEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 310 KTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 310 ~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
..+|+.|+.. ..++++|.|||+|++. ++ .++.+||+|++++
T Consensus 330 ~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~--gl--~~~~~GdtL~~~~ 374 (720)
T TIGR00490 330 KARIQQVGVYMGPERVEVDEIPAGNIVAVI--GL--KDAVAGETICTTV 374 (720)
T ss_pred eeEeeEEEEeccCCccCccEECCCCEEEEE--Cc--cccccCceeecCC
Confidence 5888898654 4689999999999884 44 4678999998654
No 53
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=2.4e-31 Score=279.00 Aligned_cols=247 Identities=26% Similarity=0.338 Sum_probs=193.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee----CCeeEEEEecCChH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET----AKRHYAHVDCPGHA 139 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~----~~~~i~iiDtPG~~ 139 (451)
..++|+++||+|||||||+++|..... .....+|+|.+.....+.+ .+..++|||||||+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~----------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe 306 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQI----------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE 306 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccC----------------ccccCCccccccceEEEEEEecCCceEEEEEECCcHH
Confidence 447999999999999999999974311 1122357776654443332 35789999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH---HHhcCC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL---LSFYKF 216 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~---l~~~~~ 216 (451)
+|..++.+++..+|++|||||+++|..+||.+++..+...++| +|+++||+|+.... .+.+.+++..+ .+.++
T Consensus 307 ~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~--~e~v~~eL~~~~ll~e~~g- 382 (742)
T CHL00189 307 AFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVP-IIVAINKIDKANAN--TERIKQQLAKYNLIPEKWG- 382 (742)
T ss_pred HHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCce-EEEEEECCCccccC--HHHHHHHHHHhccchHhhC-
Confidence 9999999999999999999999999999999999999999999 77999999997521 12222232221 12221
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC--CCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeec
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKV 294 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~ 294 (451)
..+|++++||++| .|+++|+++|..+.+ ....+.+.|+...|.+++.++++|++++|+|.+|+|++
T Consensus 383 --~~vpvv~VSAktG----------~GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~ 450 (742)
T CHL00189 383 --GDTPMIPISASQG----------TNIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHI 450 (742)
T ss_pred --CCceEEEEECCCC----------CCHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEec
Confidence 3579999999999 899999999876532 22334567899999999999999999999999999999
Q ss_pred CCEEEEecccCCCCceeEEEEEe-ecceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 295 GEEVEVLGLTQGPSLKTTVTGVE-MFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 295 gd~v~i~p~~~~~~~~~~V~~I~-~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
||.|.+++ ...+|++|. ..+.++++|.||+.|.+. |++ .....||++.
T Consensus 451 GD~vv~g~------~~gkVr~m~~~~~~~v~~a~pgdiV~I~--gl~-~~~~~Gd~l~ 499 (742)
T CHL00189 451 GDIIVIGT------SYAKIRGMINSLGNKINLATPSSVVEIW--GLS-SVPATGEHFQ 499 (742)
T ss_pred CCEEEECC------cceEEEEEEcCCCcCccEEcCCCceEec--Ccc-cCCCCCCEEE
Confidence 99999876 237999997 457899999999999773 442 3566799886
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=100.00 E-value=2.9e-32 Score=246.30 Aligned_cols=182 Identities=41% Similarity=0.625 Sum_probs=153.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccce--eeeeccCCchhhhhcCceEEeeEEEee--eCCeeEEEEecCCh
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA--IAFDEIDKAPEEKKRGITIATAHVEYE--TAKRHYAHVDCPGH 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~--~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~iiDtPG~ 138 (451)
|+.++|+++||+|||||||+++|+........... ......+..+.|+++++|++.....+. ...+.++|+|||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 46789999999999999999999976543222110 112236889999999999999999998 88999999999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHH-HHHHhcCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR-ELLSFYKFP 217 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~-~~l~~~~~~ 217 (451)
.+|.+++.+++..+|++|+|||+.+|...|+.+++..+...++| +|+|+||||+. +..++++.+++. .+++.+++.
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~--~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI--EKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS--HHHHHHHHHHHHHHHHHHTTST
T ss_pred cceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch--hhhHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999 78999999998 333444555555 777888776
Q ss_pred C-CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 218 G-DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 218 ~-~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+ ..+|++++||++| .|+++|+++|.+++|.
T Consensus 158 ~~~~~~vi~~Sa~~g----------~gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 158 GEEIVPVIPISALTG----------DGIDELLEALVELLPS 188 (188)
T ss_dssp TTSTEEEEEEBTTTT----------BTHHHHHHHHHHHS--
T ss_pred ccccceEEEEecCCC----------CCHHHHHHHHHHhCcC
Confidence 5 4789999999999 8999999999999883
No 55
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=1.8e-31 Score=285.15 Aligned_cols=264 Identities=31% Similarity=0.477 Sum_probs=207.4
Q ss_pred EcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHH
Q 013007 71 IGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (451)
Q Consensus 71 iG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (451)
+||+|+|||||+++|+.... ..|.... ..+.+|..+.|+++|+|+......+.+.+..++|||||||.+|...+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~-~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVED-GTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccC-CcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 69999999999999975422 1222111 1256899999999999999998889999999999999999999999999
Q ss_pred hcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh--HHHHHHHHHHH------------------
Q 013007 148 GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED--EELLELVEMEL------------------ 207 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~------------------ 207 (451)
++..+|++++|+|++.+...++..++..+...++| +++|+||+|+... .+..+.+++.+
T Consensus 80 ~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~ 158 (668)
T PRK12740 80 ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFT 158 (668)
T ss_pred HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCce
Confidence 99999999999999999999999999999999999 5689999998742 11222221100
Q ss_pred -----------------------------------------------HHHHHhc----C--------------CCCCCCC
Q 013007 208 -----------------------------------------------RELLSFY----K--------------FPGDEIP 222 (451)
Q Consensus 208 -----------------------------------------------~~~l~~~----~--------------~~~~~~p 222 (451)
+++++.+ . ..+.-+|
T Consensus 159 ~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~P 238 (668)
T PRK12740 159 GVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVP 238 (668)
T ss_pred EEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 0011111 0 0112478
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc-----------------CCCCCeeEEEEEEEeeCCCceEEEE
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER-----------------QLDKPFLMPIEDVFSIQGRGTVATG 285 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~-----------------~~~~p~~~~v~~~~~~~~~G~v~~g 285 (451)
++.+||++| .|+..|++.+..++|+|.. +.++|+.+.|++++.++++|.++++
T Consensus 239 v~~gSA~~~----------~Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~ 308 (668)
T PRK12740 239 VFCGSALKN----------KGVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLV 308 (668)
T ss_pred EEeccccCC----------ccHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEE
Confidence 899999998 9999999999999998842 3467899999999999999999999
Q ss_pred EEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 286 RVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 286 ~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
||.+|+|++||+|++.+.+. ..+|..|.. ...++++|.|||++++. |+ ..++.||+|++..
T Consensus 309 RV~sG~L~~g~~v~~~~~~~----~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--gl--~~~~~Gdtl~~~~ 373 (668)
T PRK12740 309 RVYSGTLKKGDTLYNSGTGK----KERVGRLYRMHGKQREEVDEAVAGDIVAVA--KL--KDAATGDTLCDKG 373 (668)
T ss_pred EEeeeEEcCCCEEEeCCCCC----cEEecceeeecCCCccccCccCCCCEEEEe--cc--CccCCCCEEeCCC
Confidence 99999999999999977432 345555532 35889999999999986 44 3689999998654
No 56
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.97 E-value=4e-30 Score=267.21 Aligned_cols=255 Identities=27% Similarity=0.317 Sum_probs=183.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee------------------eC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE------------------TA 126 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~------------------~~ 126 (451)
...|+++||+|||||||+++|.+.....+. ..++|.+.....++ ..
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~----------------~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKE----------------AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLK 69 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCC----------------CCceEEeeceeeccccccccccceeccccccccc
Confidence 348999999999999999999754211111 11222221111000 00
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh----------
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED---------- 196 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~---------- 196 (451)
...++|||||||++|...+.++++.+|++++|+|+++|+.+|+.+++..+...++| +++++||+|+...
T Consensus 70 ~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~ 148 (586)
T PRK04004 70 IPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFL 148 (586)
T ss_pred cCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHH
Confidence 11379999999999999999999999999999999999999999999999999999 7799999998621
Q ss_pred ----------HHHHHHHHHHHHHHHHhcCCCC----------CCCCeeeccccccccCCCcccchhhHHHHHHHHHh---
Q 013007 197 ----------EELLELVEMELRELLSFYKFPG----------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE--- 253 (451)
Q Consensus 197 ----------~~~~~~~~~~~~~~l~~~~~~~----------~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~--- 253 (451)
.+.++....++...+...++.. ..++++++||++| +|+++|++.+..
T Consensus 149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tG----------eGi~dLl~~i~~~~~ 218 (586)
T PRK04004 149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTG----------EGIPDLLMVLAGLAQ 218 (586)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCC----------CChHHHHHHHHHHHH
Confidence 1112222223334555555543 3689999999999 888888887753
Q ss_pred -hCCC-CCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec------------
Q 013007 254 -YIPD-PERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF------------ 319 (451)
Q Consensus 254 -~lp~-~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~------------ 319 (451)
+++. -..+.+.|++++|.+++.++|.|++++|+|.+|+|++||.|.++|... +..++|++|..+
T Consensus 219 ~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~--~i~~kVr~l~~~~~~~e~~~~~~~ 296 (586)
T PRK04004 219 RYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG--PIVTKVRALLKPRPLDEMRDPEDK 296 (586)
T ss_pred HHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC--cceEEEEEEecCcchhhccccccc
Confidence 2332 234567899999999999999999999999999999999999988532 356799999865
Q ss_pred ceeccEEecCCeEEEEeccccccCCCCCeEE
Q 013007 320 KKILDRGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 320 ~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
...+++|.|..-|-+...|++ ++..|+-+
T Consensus 297 ~~~~~~~~~~~~v~i~~~gl~--~~~~g~~~ 325 (586)
T PRK04004 297 FKPVDEVVAAAGVKISAPDLE--DALAGSPL 325 (586)
T ss_pred cccccccCCCCceEEEeCCcc--ccCCCCeE
Confidence 255667667665555433443 33556554
No 57
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.97 E-value=3.6e-30 Score=279.07 Aligned_cols=289 Identities=22% Similarity=0.331 Sum_probs=199.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---------------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------- 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------- 126 (451)
....+||+++||+|||||||+++|+..............+.+|..++|++||+|++.+...+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 45578999999999999999999986532111112223446799999999999999865555442
Q ss_pred -CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC------hH--
Q 013007 127 -KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DE-- 197 (451)
Q Consensus 127 -~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~------~~-- 197 (451)
++.++|+|||||.||..++..+++.+|++|+|||+.+|+..||+.+|+.+...++| +|+++||||+.. .+
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p-~i~~iNK~D~~~~~~~~~~~~~ 174 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIR-PVLTVNKMDRCFLELQVDGEEA 174 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCC-EEEEEECCcccchhhcCCHHHH
Confidence 57789999999999999999999999999999999999999999999999999999 568999999982 22
Q ss_pred -HHHHHHHHHHHHHHHhcC--------CCCCCCCeeecccccccc----------------------------------C
Q 013007 198 -ELLELVEMELRELLSFYK--------FPGDEIPIIRGSATSALQ----------------------------------G 234 (451)
Q Consensus 198 -~~~~~~~~~~~~~l~~~~--------~~~~~~pvi~~Sa~~g~~----------------------------------~ 234 (451)
..++.+.++++..+..++ +.+..-.+++.|+..+|. +
T Consensus 175 ~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~ 254 (843)
T PLN00116 175 YQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPAT 254 (843)
T ss_pred HHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCC
Confidence 223334444442222221 101111122222211100 0
Q ss_pred -----CC-----------------------------------------cccch-------------------hhHHHHHH
Q 013007 235 -----KN-----------------------------------------EEIGK-------------------KAILKLMD 249 (451)
Q Consensus 235 -----~~-----------------------------------------~~~~~-------------------~~i~~Ll~ 249 (451)
.+ ..... .+...|++
T Consensus 255 ~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld 334 (843)
T PLN00116 255 KKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLE 334 (843)
T ss_pred ceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHH
Confidence 00 00000 11267888
Q ss_pred HHHhhCCCCCc-------------------------CCCCCeeEEEEEEEeeCCCce-EEEEEEEeeeeecCCEEEEecc
Q 013007 250 AVDEYIPDPER-------------------------QLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEVLGL 303 (451)
Q Consensus 250 ~l~~~lp~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~ 303 (451)
.+.+++|+|.. +.+.|+.+.|++++..+..|. ++++||.||+|+.||.|++.+.
T Consensus 335 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~ 414 (843)
T PLN00116 335 MIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGP 414 (843)
T ss_pred HHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCC
Confidence 88888998731 124689999999998888787 8999999999999999987553
Q ss_pred cCCCCce-----eEEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 304 TQGPSLK-----TTVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 304 ~~~~~~~-----~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
+...... .+|..|... ..++++|.|||++++. |++ .-+..|++|++..
T Consensus 415 n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~--gl~-~~~~~gdTL~~~~ 471 (843)
T PLN00116 415 NYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMV--GLD-QFITKNATLTNEK 471 (843)
T ss_pred CCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEE--eec-ccccCCceecCCc
Confidence 3211111 355555432 4789999999999885 332 1234599997654
No 58
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6e-32 Score=266.24 Aligned_cols=270 Identities=27% Similarity=0.408 Sum_probs=213.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHH---HHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITK---VLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~---~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
+..+||++..|.|+||||+.++++. .....|....+ ...+|..+.|++||+|++.+..++.|.+.++++||||||.
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~-~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG-GATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccC-ceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 3568999999999999999998852 22333333322 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh-----------------------
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED----------------------- 196 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~----------------------- 196 (451)
||..++.++++..|++++|+|+..|++.||...++.++..++|++ .++||||....
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i-~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRI-CFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeE-EEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 999999999999999999999999999999999999999999965 79999998642
Q ss_pred -----------------------------------HHH-----------HHHHHH------------------HHHHHHH
Q 013007 197 -----------------------------------EEL-----------LELVEM------------------ELRELLS 212 (451)
Q Consensus 197 -----------------------------------~~~-----------~~~~~~------------------~~~~~l~ 212 (451)
++. ++.+.+ +++...+
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 000 010000 0011111
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc--------------------CCC-CCeeEEEE
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER--------------------QLD-KPFLMPIE 271 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~--------------------~~~-~p~~~~v~ 271 (451)
+.-+...-+||+..||+++ .|++.||+++.++||.|.. ..+ .||....+
T Consensus 275 r~Ti~r~fvPVl~GSAlKN----------kGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAF 344 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKN----------KGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAF 344 (721)
T ss_pred HHHhhcceeeEEechhhcc----------cCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEE
Confidence 1112223589999999998 8999999999999998742 112 39999999
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee-c---ceeccEEecCCeEEEEeccccccCCCCC
Q 013007 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM-F---KKILDRGEAGDNVGLLLRGLKREDVQRG 347 (451)
Q Consensus 272 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~-~---~~~v~~a~aG~~v~l~l~~~~~~~i~~G 347 (451)
+....++ |..-+.||.+|+|+.||.++....+ .+++|..+.. | .++++++.|||++++. |+ +...|
T Consensus 345 Kle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg----KKvrv~RL~rmHa~~medV~~v~AG~I~alf--Gi---dcasG 414 (721)
T KOG0465|consen 345 KLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG----KKVRVGRLVRMHANDMEDVNEVLAGDICALF--GI---DCASG 414 (721)
T ss_pred EeeecCc-cceEEEEEeeeeecCCcEEEecCCC----ceeEhHHHhHhcccccchhhhhhccceeeee--cc---ccccC
Confidence 9888777 9999999999999999999986533 4677777643 2 3789999999999874 55 78999
Q ss_pred eEEecCC
Q 013007 348 QVIAKPG 354 (451)
Q Consensus 348 ~vl~~~~ 354 (451)
|++.+..
T Consensus 415 DTftd~~ 421 (721)
T KOG0465|consen 415 DTFTDKQ 421 (721)
T ss_pred ceeccCc
Confidence 9999873
No 59
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.97 E-value=5.5e-30 Score=264.94 Aligned_cols=254 Identities=26% Similarity=0.323 Sum_probs=181.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee------------------CC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET------------------AK 127 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------------~~ 127 (451)
..|+++||+|||||||+++|++.....+ ...|+|.+.....+.. ..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~----------------e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~ 68 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR----------------EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKI 68 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc----------------cCCceecccCeeEeeecccccccccccccccccccc
Confidence 4799999999999999999985421111 1123333222111111 11
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH------HHH-
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE------ELL- 200 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~------~~~- 200 (451)
..+.|||||||++|...+..+++.+|++++|+|+++|..+|+.+++..+...++| +++++||+|+.+.. ..+
T Consensus 69 ~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e 147 (590)
T TIGR00491 69 PGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFME 147 (590)
T ss_pred CcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHH
Confidence 2489999999999999999999999999999999999999999999999999999 77999999997410 000
Q ss_pred ------HHHHHH-------HHHHHHhcCCCC----------CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh---
Q 013007 201 ------ELVEME-------LRELLSFYKFPG----------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY--- 254 (451)
Q Consensus 201 ------~~~~~~-------~~~~l~~~~~~~----------~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~--- 254 (451)
+.++.. +...+...++.. ..+|++|+||++| +|+++|+++|...
T Consensus 148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG----------eGideLl~~l~~l~~~ 217 (590)
T TIGR00491 148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG----------EGIPELLTMLAGLAQQ 217 (590)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC----------CChhHHHHHHHHHHHH
Confidence 011111 111233334432 3589999999999 8999999887542
Q ss_pred -CC-CCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecc------------
Q 013007 255 -IP-DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK------------ 320 (451)
Q Consensus 255 -lp-~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~------------ 320 (451)
++ ....+.+.|++++|.+++.++|.|++++|.|.+|+|++||.|.++|.+ +++.++|++|...+
T Consensus 218 ~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~--~~i~~kVr~l~~~~~l~e~r~~~~~~ 295 (590)
T TIGR00491 218 YLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSD--DVIVTRVRALLKPRPLEEMRESRKKF 295 (590)
T ss_pred HhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCC--CcccEEEEEecCCCcccccccccccc
Confidence 22 122356789999999999999999999999999999999999999854 24678999997543
Q ss_pred eeccEEecCCeEEEEeccccccCCCCCeEE
Q 013007 321 KILDRGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 321 ~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
..+.++.|..-+-+...+++ +...|+.+
T Consensus 296 ~~~~~~~~~~~~~v~~~~l~--~~~aG~~~ 323 (590)
T TIGR00491 296 QKVDEVVAAAGVKIAAPGLD--DVMAGSPI 323 (590)
T ss_pred CCcceecCCCceeEEecCCC--CCCCCCEE
Confidence 35566665555545444443 23456555
No 60
>PTZ00416 elongation factor 2; Provisional
Probab=99.97 E-value=6e-30 Score=276.75 Aligned_cols=289 Identities=25% Similarity=0.365 Sum_probs=200.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC----------CeeEE
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------KRHYA 131 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~i~ 131 (451)
....+||+++||+|||||||+++|+.......+......+.+|..++|++||+|++.+...+.+. ++.++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 44568999999999999999999986432111111222345799999999999999865554443 56799
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC----C--hHH---HHHH
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV----E--DEE---LLEL 202 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~----~--~~~---~~~~ 202 (451)
|+|||||.+|..++..+++.+|++|+|||+.+|+..||+.+|..+...++| +|+++||||+. . +++ .++.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p-~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 174 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIR-PVLFINKVDRAILELQLDPEEIYQNFVK 174 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCC-EEEEEEChhhhhhhcCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 56899999997 2 222 2333
Q ss_pred HHHHHHHHHHhcC--------CCCCCCCeeecccccc---------------------------c-----c--CC-----
Q 013007 203 VEMELRELLSFYK--------FPGDEIPIIRGSATSA---------------------------L-----Q--GK----- 235 (451)
Q Consensus 203 ~~~~~~~~l~~~~--------~~~~~~pvi~~Sa~~g---------------------------~-----~--~~----- 235 (451)
+.++++..+..++ +.+....+...|+..| | . +.
T Consensus 175 ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~ 254 (836)
T PTZ00416 175 TIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKD 254 (836)
T ss_pred HHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEec
Confidence 4445554444211 1111111222222210 0 0 00
Q ss_pred -------------------------------------------Ccccch-h------h------------HHHHHHHHHh
Q 013007 236 -------------------------------------------NEEIGK-K------A------------ILKLMDAVDE 253 (451)
Q Consensus 236 -------------------------------------------~~~~~~-~------~------------i~~Ll~~l~~ 253 (451)
+..... + + +..|++++.+
T Consensus 255 ~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~ 334 (836)
T PTZ00416 255 ETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVD 334 (836)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHH
Confidence 000000 0 0 2568888999
Q ss_pred hCCCCCc-------------------------CCCCCeeEEEEEEEeeCCCce-EEEEEEEeeeeecCCEEEEecccCCC
Q 013007 254 YIPDPER-------------------------QLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEVEVLGLTQGP 307 (451)
Q Consensus 254 ~lp~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v~i~p~~~~~ 307 (451)
++|+|.. +.++|+.+.|+++..++..|. ++++||.||+|+.||.|++.+.+...
T Consensus 335 ~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~ 414 (836)
T PTZ00416 335 HLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVP 414 (836)
T ss_pred hCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCC
Confidence 9998731 124589999999998898898 89999999999999999876543211
Q ss_pred Ccee-----EEEEEeec----ceeccEEecCCeEEEEeccccccCCCCCeEEecCC
Q 013007 308 SLKT-----TVTGVEMF----KKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPG 354 (451)
Q Consensus 308 ~~~~-----~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~ 354 (451)
..+. +|..|... ..++++|.||+++++. |++..-.+.| +|+++.
T Consensus 415 ~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~--gl~~~~~~tg-TL~~~~ 467 (836)
T PTZ00416 415 GKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLV--GVDQYLVKSG-TITTSE 467 (836)
T ss_pred CCcccchheecceeEEecCCCceECcEECCCCEEEEE--ecccceecce-eecCCC
Confidence 1112 36666432 4789999999999885 4432236788 887654
No 61
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.1e-30 Score=254.60 Aligned_cols=246 Identities=30% Similarity=0.310 Sum_probs=193.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHADYV 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~~~ 142 (451)
....|.++||+|||||||+++|.+...-. ....|+|.....+.... ++..++|+|||||..|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA----------------~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA----------------GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceeh----------------hhcCCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 34689999999999999999997542111 11237888776544433 56899999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHHHHHHH---HHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELR---ELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~~~~~~---~~l~~~~~~~ 218 (451)
.+..+|+..+|.++|||.|.+|+.+||.|.+..++..++| +|+++||||..+ +.+ .+++++. -.++.+|
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~Vp-iVvAinKiDkp~a~pe---kv~~eL~~~gi~~E~~G--- 288 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVP-IVVAINKIDKPGANPE---KVKRELLSQGIVVEDLG--- 288 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCC-EEEEEeccCCCCCCHH---HHHHHHHHcCccHHHcC---
Confidence 9999999999999999999999999999999999999999 889999999886 222 1222221 1233433
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC--CCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI--PDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l--p~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
.+++++|+||++| .|++.|.+++.-.. ..-..+++.|+...|.++.-++|+|.+++..|..|+|+.|+
T Consensus 289 GdVQvipiSAl~g----------~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~ 358 (683)
T KOG1145|consen 289 GDVQVIPISALTG----------ENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGS 358 (683)
T ss_pred CceeEEEeecccC----------CChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccccc
Confidence 4799999999999 78888887775321 12344678999999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
.+..+- .-++|+++.. +++++++|.|++-|.+. |++ +--..||-+.
T Consensus 359 vlV~G~------~w~KVr~l~D~nGk~i~~A~Ps~pv~V~--Gwk-dlP~aGD~vl 405 (683)
T KOG1145|consen 359 VLVAGK------SWCKVRALFDHNGKPIDEATPSQPVEVL--GWK-DLPIAGDEVL 405 (683)
T ss_pred EEEEec------hhhhhhhhhhcCCCCccccCCCCceEee--ccc-CCCCCCceEE
Confidence 998753 3489999965 46899999999998775 665 2234576664
No 62
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.8e-32 Score=258.21 Aligned_cols=331 Identities=32% Similarity=0.428 Sum_probs=265.7
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHH------------HHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAI------------TKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK 127 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L------------~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~ 127 (451)
..++++++|.++||+++||||+..-. .......+++.+.+.|.+|.+..|+++|++++...+.++...
T Consensus 2 ~~~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 2 GKEKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred CCcccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 34678899999999999999987632 233456789999999999999999999999998888888888
Q ss_pred eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-------CccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHH
Q 013007 128 RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-------MPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELL 200 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-------~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~ 200 (451)
+.++++|.|||.+|.++|+.+..++|.++++|.+..|. ..|+++|..++..+++.++++.+||||..+++-..
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~ 161 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 161 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCccc
Confidence 99999999999999999999999999999999985443 38999999999999999999999999987633211
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCc
Q 013007 201 ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRG 280 (451)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G 280 (451)
... ++..+. ......+ .+ ++..+. ..++|...+.|
T Consensus 162 ~r~----~ei~k~-------~~~~~~~--~g----------~n~~~~----------------------~~~~~~~~g~~ 196 (391)
T KOG0052|consen 162 ARY----EEIKKE-------VSSYIKK--IG----------YNPAAV----------------------LQDVYKIGGIG 196 (391)
T ss_pred cch----hhhhee-------eeeeeec--cc----------cCChhh----------------------hccceeeccee
Confidence 111 111111 0000000 00 111111 34566666665
Q ss_pred eEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEecCCCc--cc
Q 013007 281 TVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIAKPGSV--KT 358 (451)
Q Consensus 281 ~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~~~~~~--~~ 358 (451)
+..|.++.++.+...|.. ...++++..+++....++.+|++++++..++...++++|+++.+.... ..
T Consensus 197 ------~~t~iie~~~~v~~~~~~----~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~p~~~ 266 (391)
T KOG0052|consen 197 ------VETGISEPGMDVTFAPSG----VTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKNDPPVE 266 (391)
T ss_pred ------eeeeeccCccceeccccc----cccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccCCccc
Confidence 888999999988776532 267888888888888899999999999999999999999999887643 34
Q ss_pred ccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeCCeEe
Q 013007 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELISPLP 425 (451)
Q Consensus 359 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~~ 425 (451)
...|.+++++|.|+ ..|..||.|.+.||++++.|++..+ +.++.++++|.+.+.+.+.+|+|
T Consensus 267 ~~g~t~qviilnhp-----gqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp~~ 341 (391)
T KOG0052|consen 267 AAGFTAQVIILNHP-----GQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKPLC 341 (391)
T ss_pred cccceeeEEEecCc-----cccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCccc
Confidence 67899999999986 5799999999999999999999755 36789999999999999999999
Q ss_pred eecC------CeEEEeeCCcEEEEEEEEeec
Q 013007 426 LQQG------QRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 426 ~~~~------~rfvlr~~~~tig~G~I~~~~ 450 (451)
++.. +||.+|+...|+|.|.|..+.
T Consensus 342 ve~~~~~~~l~rfav~d~~~tvavgvikav~ 372 (391)
T KOG0052|consen 342 VESFSDYVPLGRFAVRDMRQTVAVGVIKAVD 372 (391)
T ss_pred cccccccccccchhhhhhhccccccceeeee
Confidence 9864 799999999999999998764
No 63
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=4.3e-30 Score=253.43 Aligned_cols=230 Identities=31% Similarity=0.383 Sum_probs=184.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---CeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---KRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~iiDtPG~~~~~ 142 (451)
.-|+++||+|||||||++.+.+.....|. ..|+|.....+.++.+ ...++|+|||||+-|.
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~E----------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt 69 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGE----------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFT 69 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcccccc----------------CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHH
Confidence 48999999999999999999755332221 2389999888878774 4689999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC----C
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP----G 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~----~ 218 (451)
.+..+|...+|.++||||+++|+.+||.|.+..++..++| +||++||||+.+.+- +.+..+ +.++|+. +
T Consensus 70 ~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~np--~~v~~e----l~~~gl~~E~~g 142 (509)
T COG0532 70 AMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVP-IVVAINKIDKPEANP--DKVKQE----LQEYGLVPEEWG 142 (509)
T ss_pred HHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCC-EEEEEecccCCCCCH--HHHHHH----HHHcCCCHhhcC
Confidence 9999999999999999999999999999999999999999 889999999986211 112222 2223433 2
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC--CCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP--DPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGE 296 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp--~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd 296 (451)
.++.++|+||++| +|+++|++.+.-... .-..+.+.+.+..|.++..++|.|.+++..|.+|+|++||
T Consensus 143 g~v~~VpvSA~tg----------~Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD 212 (509)
T COG0532 143 GDVIFVPVSAKTG----------EGIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGD 212 (509)
T ss_pred CceEEEEeeccCC----------CCHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCC
Confidence 3588999999999 999999998864321 2234567899999999999999999999999999999999
Q ss_pred EEEEecccCCCCceeEEEEEee-cceeccEEecCCeEEE
Q 013007 297 EVEVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGL 334 (451)
Q Consensus 297 ~v~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l 334 (451)
.+..+.. ..+|+.+.. ...+++.+.++.-+.+
T Consensus 213 ~iv~g~~------~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 213 IIVAGGE------YGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEccC------CCceEEeehhcCCCccccCCCCCeEE
Confidence 9998652 367777754 4678888877755544
No 64
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.96 E-value=4.2e-29 Score=230.90 Aligned_cols=190 Identities=36% Similarity=0.487 Sum_probs=156.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH---------------hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEE
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYA 131 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 131 (451)
||+++||+|||||||+++|+.... ..|...+.+.+.+|..++|++||+|++.....+++.+..++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 689999999999999999964321 12333333445789999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCC-------CCCccHHHHHHHHHHcCCCeEEEEEeeccCCC---hHHHHH
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPD-------GPMPQTKEHILLARQVGVPSLVCFLNKVDLVE---DEELLE 201 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~-------g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~---~~~~~~ 201 (451)
+||||||.+|...+..++..+|++++|||+.+ +...++.+++..+..++++++|+++||+|+.. .++.++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 56779999999888888777889999999983 245567
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCc--ccchhhHHHHHHHHHhhCC
Q 013007 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNE--EIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~--~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.+++.++++.+++....+|++++||++|.+.+++ ...|+....|+++|....|
T Consensus 161 ~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~~~~~~~w~~g~~l~~~l~~~~~ 217 (219)
T cd01883 161 EIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIEKSENMPWYKGPTLLEALDSLEP 217 (219)
T ss_pred HHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCcCCCCCCCccCCcHHHHHhCCCC
Confidence 777788888888887666789999999999765543 2234555889999887544
No 65
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.96 E-value=2.1e-28 Score=224.47 Aligned_cols=188 Identities=29% Similarity=0.373 Sum_probs=152.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH---------------hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEE
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA---------------EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYA 131 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~ 131 (451)
+|+++||+|+|||||+++|+.... ..++......+.+|..++|+++|+|++.....+++.+.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975421 11222233456789999999999999999999999999999
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHHHHHHHHH
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELREL 210 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~~~~~~~~ 210 (451)
|||||||.+|...+..++..+|++++|+|+++++..++.+++.++...++|.+|+|+||+|+.+ .++.++.+.+++.++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888887888999999975 344556667788888
Q ss_pred HHhcCCCCCCCCeeeccccccccCCC--cccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKN--EEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~--~~~~~~~i~~Ll~~l~~~lp 256 (451)
++.+++ ...+++++||+++.+..+ ...+|+-.+.|+++|....|
T Consensus 161 ~~~~~~--~~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~~ 206 (208)
T cd04166 161 AAKLGI--EDITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVPI 206 (208)
T ss_pred HHHcCC--CCceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCCC
Confidence 888876 346799999999866543 23345555788888876433
No 66
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=8.3e-28 Score=220.87 Aligned_cols=190 Identities=25% Similarity=0.321 Sum_probs=145.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC----------CeeEEEEec
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA----------KRHYAHVDC 135 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~----------~~~i~iiDt 135 (451)
+||+++||+|||||||+++|+.......+......+.+|..+.|++||+|+..+...+.+. +..++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 5899999999999999999986532111111122346899999999999999875444333 678999999
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC------ChH---HHHHHHHHH
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV------EDE---ELLELVEME 206 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~------~~~---~~~~~~~~~ 206 (451)
|||.+|..++..+++.+|++++|+|+.+|...|+++++..+...++| +|+|+||+|+. +++ ..+..+.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~ 159 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPEEAYQRLARIIEQ 159 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988998 77999999986 223 334455566
Q ss_pred HHHHHHhcCCC--------CCCC-C----eeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 207 LRELLSFYKFP--------GDEI-P----IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 207 ~~~~l~~~~~~--------~~~~-p----vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
+..+++.+.-+ ...+ | |++.||+.||.-.- . ....+..+++.+.+++|+|
T Consensus 160 ~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~-~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 160 VNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTI-I-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred HhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEecc-c-cccchHHHHHHHHhhCCCC
Confidence 66666665211 0012 5 88899998876521 1 2346778999999999976
No 67
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.95 E-value=6.8e-27 Score=213.67 Aligned_cols=169 Identities=36% Similarity=0.543 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-------------------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA------------------- 126 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~------------------- 126 (451)
++|+++||+|+|||||+++|++. ..|..+.|.++|+|+..+...+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~-------------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV-------------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-------------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 48999999999999999999633 2467778888888888765544332
Q ss_pred --------C------eeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC-CCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 127 --------K------RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 127 --------~------~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g-~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
+ ++++|||||||++|..++..++..+|++++|+|+.++ ...++.+++..+...+++++++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 2 6799999999999999999999999999999999984 678899999888888887788999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc
Q 013007 192 DLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~ 260 (451)
|+.++.+ .....++++++++.+.. ...+++++||++| +|+++|++.|.+.+|.|.|
T Consensus 148 Dl~~~~~-~~~~~~~i~~~~~~~~~--~~~~i~~vSA~~g----------~gi~~L~~~l~~~l~~~~~ 203 (203)
T cd01888 148 DLVKEEQ-ALENYEQIKKFVKGTIA--ENAPIIPISAQLK----------YNIDVLLEYIVKKIPTPPR 203 (203)
T ss_pred hccCHHH-HHHHHHHHHHHHhcccc--CCCcEEEEeCCCC----------CCHHHHHHHHHHhCCCCCC
Confidence 9986433 23333456666655432 3578999999999 9999999999999987754
No 68
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.95 E-value=5.2e-26 Score=245.57 Aligned_cols=243 Identities=27% Similarity=0.312 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC------------------eeEEEEecCChH
Q 013007 78 KTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK------------------RHYAHVDCPGHA 139 (451)
Q Consensus 78 KSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~------------------~~i~iiDtPG~~ 139 (451)
||||+.+|.+... .+....|+|.+.....++.+. ..++|||||||+
T Consensus 474 KTtLLD~iR~t~v----------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRV----------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCc----------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 9999999986522 223345888888766555431 138999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh-----------------HHHHHH
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED-----------------EELLEL 202 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~-----------------~~~~~~ 202 (451)
+|...+..++..+|++++|+|+++|+.+|+.+++..+...++| +|+|+||+|+... +...++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 9999888889999999999999999999999999999999999 7899999999641 111222
Q ss_pred HHHHHHHH---HHhcCCC----------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC-----CCCcCCCC
Q 013007 203 VEMELREL---LSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP-----DPERQLDK 264 (451)
Q Consensus 203 ~~~~~~~~---l~~~~~~----------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp-----~~~~~~~~ 264 (451)
+.+.+.++ +...|+. +..+|++|+||++| +|+++|+++|....+ ....+.+.
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG----------eGId~Ll~~l~~l~~~~l~~~L~~~~~~ 686 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG----------EGIPELLMMVAGLAQKYLEERLKLNVEG 686 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC----------CCHHHHHHHHHHhhHHhhhhhhccCCCC
Confidence 22222222 3445543 23689999999999 999999998865322 12334678
Q ss_pred CeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec------------ceeccEEecCCeE
Q 013007 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF------------KKILDRGEAGDNV 332 (451)
Q Consensus 265 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~------------~~~v~~a~aG~~v 332 (451)
|+++.|.+++.++|.|++++|.|.+|+|++||.|.++|.+. ++.++|++|... ..++++|.|+.-|
T Consensus 687 ~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~--~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~v 764 (1049)
T PRK14845 687 YAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDD--VIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGV 764 (1049)
T ss_pred ceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCC--cceEEEEEecCcccccccccccccccccccccCCCce
Confidence 99999999999999999999999999999999999988542 467899999632 2467788787777
Q ss_pred EEEeccccccCCCCCeEEe
Q 013007 333 GLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 333 ~l~l~~~~~~~i~~G~vl~ 351 (451)
-+...|++ .+..|+.+.
T Consensus 765 ki~a~gl~--~~~aG~~~~ 781 (1049)
T PRK14845 765 KIAAPGLE--EVLAGSPIR 781 (1049)
T ss_pred EEecCCcc--ccCCCCeEE
Confidence 66545544 346676654
No 69
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.94 E-value=4.9e-26 Score=215.72 Aligned_cols=127 Identities=31% Similarity=0.434 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
||+++||+|+|||||+++|+.... ..|..... .+.+|..++|++||+|++.....+++.+.+++|||||||.+|..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~-~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG-GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC-ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 689999999999999999975332 22322221 34689999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
++..++..+|++++|||+.+|+..++.+++..+...++| +++++||+|+.+
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p-~ivviNK~D~~~ 130 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVP-RIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECCCCCC
Confidence 999999999999999999999999999999999999999 558999999864
No 70
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.94 E-value=1.6e-25 Score=203.45 Aligned_cols=191 Identities=30% Similarity=0.410 Sum_probs=148.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|++|+|||||+++|+..............+.+|..+.|+.+|+|.......+...+..+++||||||++|...
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 46999999999999999999986321100000001234677778888999998888778888899999999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC--CCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD--EIP 222 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~p 222 (451)
+..+++.+|++++|+|++++...++..++..+...++| +++|+||+|+.+.. .+...+++.+++..++...+ ..|
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRPDAR--PEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--HHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999999998888888888877778999 67899999997521 22334455566655544322 578
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
++++||++|.+........+++.+|++.|.+++|.|
T Consensus 159 iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 159 VLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 999999999777665556689999999999999875
No 71
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=9.1e-26 Score=208.35 Aligned_cols=176 Identities=26% Similarity=0.392 Sum_probs=141.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE------------------------EE
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH------------------------VE 122 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~------------------------~~ 122 (451)
+|+++|+.++|||||+++|+....+.|++.... .++.+..|.++|+|..... ..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARL--NLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEe--ehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 589999999999999999998777666665543 4678888988999875432 11
Q ss_pred eeeCCeeEEEEecCChHHHHHHHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHH
Q 013007 123 YETAKRHYAHVDCPGHADYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELL 200 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~~~~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~ 200 (451)
++..++.++|+|||||++|.+++..++. .+|++++|||+.++...++++++.++...++| +++|+||+|+.+. +.+
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~~-~~~ 156 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAPA-NIL 156 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccCH-HHH
Confidence 2344678999999999999999999986 79999999999999999999999999999999 7799999999864 344
Q ss_pred HHHHHHHHHHHHhcCCC---------------------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 201 ELVEMELRELLSFYKFP---------------------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 201 ~~~~~~~~~~l~~~~~~---------------------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+...+++.++++..+.. ...+|+|++|+.+| .|+++|.+.|.. +|+
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg----------~Gi~~L~~~L~~-lp~ 223 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTG----------EGLDLLHAFLNL-LPL 223 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCc----------cCHHHHHHHHHh-cCC
Confidence 55556777776643321 13469999999999 999999988865 564
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=2e-25 Score=202.46 Aligned_cols=172 Identities=34% Similarity=0.544 Sum_probs=136.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--------------CeeEE
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--------------KRHYA 131 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--------------~~~i~ 131 (451)
+||+++||+|+|||||+++|+... + ...+|....|+++|+|++.....+.+. +..++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~---~------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIA---S------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhcc---c------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 489999999999999999998531 0 123577788899999998876555443 67899
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHH---HHHHHHHHH
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL---LELVEMELR 208 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~---~~~~~~~~~ 208 (451)
+||||||.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++++||+|+....+. .+.+++.+.
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKK-LIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988999999999999999888888888777777887 7789999999853332 333333333
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
..+..+++ ..+|++++||+++ .|+.+|+++|.+.+|+|.
T Consensus 151 ~~~~~~~~--~~~~vi~iSa~~g----------~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 151 KTLEKTRF--KNSPIIPVSAKPG----------GGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHhcCc--CCCCEEEEeccCC----------CCHHHHHHHHHhcccccc
Confidence 33443333 3579999999999 999999999999988763
No 73
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.94 E-value=1.5e-25 Score=208.86 Aligned_cols=180 Identities=31% Similarity=0.484 Sum_probs=145.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH---HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~---~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
||+++||+|+|||||+++|+... ...|+.... .+.+|..++|++||+|+......+++.+.++++||||||.+|..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~-~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG-TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC-cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 68999999999999999998653 223333222 24578889999999999999999999999999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC--hHHHHHHHHHHH--------------
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE--DEELLELVEMEL-------------- 207 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~--~~~~~~~~~~~~-------------- 207 (451)
++..+++.+|++++|+|+.++...++.+++..+...++| +++++||+|+.. .++.++.+++.+
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~ 158 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAP 158 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEee
Confidence 999999999999999999999999999999999999999 568999999874 333343333221
Q ss_pred --------------------HHHHHhcC------------------CCCCCCCeeeccccccccCCCcccchhhHHHHHH
Q 013007 208 --------------------RELLSFYK------------------FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMD 249 (451)
Q Consensus 208 --------------------~~~l~~~~------------------~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~ 249 (451)
++++++|- ..+.-+||++.||.++ .|+..||+
T Consensus 159 ~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~----------~Gv~~ll~ 228 (237)
T cd04168 159 NICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKG----------IGIEELLE 228 (237)
T ss_pred eeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCC----------cCHHHHHH
Confidence 22333331 1123589999999998 99999999
Q ss_pred HHHhhCCCC
Q 013007 250 AVDEYIPDP 258 (451)
Q Consensus 250 ~l~~~lp~~ 258 (451)
.|..++|+|
T Consensus 229 ~~~~~~p~~ 237 (237)
T cd04168 229 GITKLFPTS 237 (237)
T ss_pred HHHHhcCCC
Confidence 999999975
No 74
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=6.8e-26 Score=218.46 Aligned_cols=289 Identities=24% Similarity=0.353 Sum_probs=199.7
Q ss_pred hccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe---------------
Q 013007 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY--------------- 123 (451)
Q Consensus 59 ~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~--------------- 123 (451)
|.+.+..+|+.++.|+|||||||...|.....-.....+...+.+|..+.|++||+|+..+.+.+
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 45566789999999999999999999976543333333344456899999999999998865432
Q ss_pred -eeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC------Ch
Q 013007 124 -ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV------ED 196 (451)
Q Consensus 124 -~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~------~~ 196 (451)
+.++.-+++||.|||-||..+.-.+++..|++++|||+.+|+..||+..|+.+....+.++ +++||+|.. +.
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPv-lv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPV-LVMNKMDRALLELQLSQ 171 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccce-EEeehhhHHHHhhcCCH
Confidence 1235678999999999999999999999999999999999999999999999999888866 799999964 23
Q ss_pred HHHHHHHHHHHHHH---HHhcCC--------CCCCCCeeecccccccc--------------------------------
Q 013007 197 EELLELVEMELREL---LSFYKF--------PGDEIPIIRGSATSALQ-------------------------------- 233 (451)
Q Consensus 197 ~~~~~~~~~~~~~~---l~~~~~--------~~~~~pvi~~Sa~~g~~-------------------------------- 233 (451)
++.++.+...++.+ +..++. .++.-.+-+.|+++||.
T Consensus 172 EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~ 251 (842)
T KOG0469|consen 172 EELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFN 251 (842)
T ss_pred HHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccC
Confidence 44444332211100 000110 00011122233333322
Q ss_pred --------------CCC-----------c--------------------------------------------ccchhhH
Q 013007 234 --------------GKN-----------E--------------------------------------------EIGKKAI 244 (451)
Q Consensus 234 --------------~~~-----------~--------------------------------------------~~~~~~i 244 (451)
++. + ..+....
T Consensus 252 ~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAa 331 (842)
T KOG0469|consen 252 PKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAA 331 (842)
T ss_pred ccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchH
Confidence 000 0 0000223
Q ss_pred HHHHHHHHhhCCCCCc-------------------------CCCCCeeEEEEEEEeeCCCce-EEEEEEEeeeeecCCEE
Q 013007 245 LKLMDAVDEYIPDPER-------------------------QLDKPFLMPIEDVFSIQGRGT-VATGRVEQGTIKVGEEV 298 (451)
Q Consensus 245 ~~Ll~~l~~~lp~~~~-------------------------~~~~p~~~~v~~~~~~~~~G~-v~~g~v~sG~l~~gd~v 298 (451)
+.||+.|.-++|+|.. +.++|+.|+|++.......|+ .++|||.+|++..|+++
T Consensus 332 dallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~Kv 411 (842)
T KOG0469|consen 332 DALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKV 411 (842)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEE
Confidence 5677777777887632 568999999999987777777 68899999999999999
Q ss_pred EEeccc--CCCCceeEEEEEee-------cceeccEEecCCeEEEEeccccccCCCCCeEE
Q 013007 299 EVLGLT--QGPSLKTTVTGVEM-------FKKILDRGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 299 ~i~p~~--~~~~~~~~V~~I~~-------~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
+|...+ +++....-+++|++ +-++++.+.+|.++++. |++.--++.|-+-
T Consensus 412 RiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlv--GvDqfLvKtGTiT 470 (842)
T KOG0469|consen 412 RIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLV--GVDQFLVKTGTIT 470 (842)
T ss_pred EEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEe--ehhHhhhccCcee
Confidence 997644 22222233455542 34899999999999986 6665555666443
No 75
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.4e-27 Score=222.14 Aligned_cols=271 Identities=27% Similarity=0.374 Sum_probs=203.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
..+||+++.|+|+||||...+|+-. ....|.... ..++.|+...||+||+|++.+.+.|+|.++++++||||||.|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vdd-gdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDD-GDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCC-CchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 4579999999999999999998632 222222211 123568899999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh------------------------
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED------------------------ 196 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~------------------------ 196 (451)
|.-++.+.++..|+++.|+|++.|+++||...|+.+..+++|.. +++||||....
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~-~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAH-CFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchh-hhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 99999999999999999999999999999999999999999965 89999998531
Q ss_pred -----------------------------------------HHHHHHHHHH---H------------HHHHHhcC-----
Q 013007 197 -----------------------------------------EELLELVEME---L------------RELLSFYK----- 215 (451)
Q Consensus 197 -----------------------------------------~~~~~~~~~~---~------------~~~l~~~~----- 215 (451)
++..+++.+. + ..+++++.
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence 1111111110 0 11122211
Q ss_pred --------------CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcC-------CCCCeeEEEEEEE
Q 013007 216 --------------FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQ-------LDKPFLMPIEDVF 274 (451)
Q Consensus 216 --------------~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~-------~~~p~~~~v~~~~ 274 (451)
......|+.+.||.++ .|++.|+++..-++|+|... ....++..-+++.
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaikn----------kgiqplldavtmylpspeernyeflqwykddlcalafkvl 343 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKN----------KGIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVL 343 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhcc----------cCccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhh
Confidence 1111367888888887 89999999999999988643 3455666677888
Q ss_pred eeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccccCCCCCeEE
Q 013007 275 SIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKREDVQRGQVI 350 (451)
Q Consensus 275 ~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl 350 (451)
.++.+|.+++-|+.+|+++++-.+..... .....+..+.. .+..+++..||.+.-.. |+ .....||++
T Consensus 344 hdkqrg~l~fmriysgsi~~~~ai~nin~----~~se~~~kl~~pfade~~~i~qlsagnialt~--gl--k~tatgdti 415 (753)
T KOG0464|consen 344 HDKQRGPLSFMRIYSGSIHNNLAIFNING----MCSEGILKLFLPFADEHREIEQLSAGNIALTA--GL--KHTATGDTI 415 (753)
T ss_pred cccccCceeEEEEecccccCceeeeeccc----ccccchHhhhccchhhhhhhhhcccccEEEEe--cc--eeeccCCeE
Confidence 88999999999999999999999876542 23344444432 24678899999764332 44 356789998
Q ss_pred ecCC
Q 013007 351 AKPG 354 (451)
Q Consensus 351 ~~~~ 354 (451)
....
T Consensus 416 vask 419 (753)
T KOG0464|consen 416 VASK 419 (753)
T ss_pred Eecc
Confidence 7543
No 76
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.93 E-value=5.8e-25 Score=208.26 Aligned_cols=130 Identities=30% Similarity=0.495 Sum_probs=112.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH---HHhcCccce---eeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV---LAEEGKAKA---IAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~---~~~~g~~~~---~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
.+||+++||+|+|||||+++|+.. ....|.... .....+|..++|++||+++......+++.+.++++||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 479999999999999999999854 233333221 12235788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+|..++..+++.+|++++|+|+++++..++...+..+...++| +++++||+|+..
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~ 137 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREG 137 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCC
Confidence 99999999999999999999999999999999999998888999 668999999864
No 77
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=9.4e-24 Score=185.82 Aligned_cols=162 Identities=43% Similarity=0.680 Sum_probs=127.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~~~ 144 (451)
++|+++|++|+|||||+++|++. ..+..+.+..+++|++.....+... +..+.+|||||+++|...
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~-------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 67 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGI-------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKN 67 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCc-------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHH
Confidence 37999999999999999999843 1233444556678887766666655 678999999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCee
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi 224 (451)
+..+++.+|++++|+|+++++..++.+.+..+...+.+++++++||+|+.+.. ..+...+++.+.++..+. ...+++
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~ 144 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDED-WLELVEEEIRELLAGTFL--ADAPIF 144 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHH-HHHHHHHHHHHHHHhcCc--CCCcEE
Confidence 98899999999999999998888998888877777774488999999998643 223334455566655332 347899
Q ss_pred eccccccccCCCcccchhhHHHHHHHHHh
Q 013007 225 RGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 225 ~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
++||+++ +|++++++.+..
T Consensus 145 ~~Sa~~~----------~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTG----------EGIEELKEYLDE 163 (164)
T ss_pred EEeCCCC----------cCHHHHHHHHhh
Confidence 9999999 899999988754
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=8.2e-24 Score=189.37 Aligned_cols=174 Identities=28% Similarity=0.420 Sum_probs=131.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe-----eeCCeeEEEEecCChHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-----ETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-----~~~~~~i~iiDtPG~~~ 140 (451)
+||+++|++|+|||||+++|++.....-+. ....+..+..+.++.+|+|.......+ +..+..++|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcC-CCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 589999999999999999998642111000 011234677788889999987765444 33456788999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
|...+..++..+|++|+|+|++++...++.+++..+...++| +++|+||+|+.+... ....+ ++.+.+++. .
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~--~~~~~---~~~~~~~~~--~ 151 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLE-IIPVINKIDLPSADP--ERVKQ---QIEDVLGLD--P 151 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH--HHHHH---HHHHHhCCC--c
Confidence 999999999999999999999998888888888777778888 778999999864211 11222 233333442 2
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.+++++||++| .|+++|++.|.+.+|+|
T Consensus 152 ~~~~~~Sa~~g----------~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 SEAILVSAKTG----------LGVEDLLEAIVERIPPP 179 (179)
T ss_pred ccEEEeeccCC----------CCHHHHHHHHHhhCCCC
Confidence 35899999999 99999999999988765
No 79
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=8.6e-24 Score=194.78 Aligned_cols=190 Identities=24% Similarity=0.335 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc---CccceeeeeccCCchhhhhcCceEEeeEEEeee-----CCeeEEEEecCC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE---GKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-----AKRHYAHVDCPG 137 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~---g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-----~~~~i~iiDtPG 137 (451)
+||+++||+|+|||||+++|+...... |.......+.+|..++|+++|+|+......+.+ ....+++|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 589999999999999999998754332 223333344578889999999999876665533 246789999999
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC------hH---HHHHHHHHHHH
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DE---ELLELVEMELR 208 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~------~~---~~~~~~~~~~~ 208 (451)
|.+|...+..++..+|++++|+|+.++...++.+++..+...++| +++|+||+|+.. .. +.++++.+++.
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n 159 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLP-IVLVINKIDRLILELKLPPNDAYFKLRHIIDEVN 159 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCcccccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888888888888777888 778999999861 12 34555566777
Q ss_pred HHHHhcCCCC------CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 209 ELLSFYKFPG------DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 209 ~~l~~~~~~~------~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.+++.++++. ..-.++..|++.+|.-.... ..++.+|++.|.+.+|+|
T Consensus 160 ~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 160 NIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLES--FAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHH--HHhhhhHHHHHHhhCCCC
Confidence 7777776532 12236778888776542211 255678999999988865
No 80
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.91 E-value=2e-23 Score=188.20 Aligned_cols=180 Identities=41% Similarity=0.661 Sum_probs=146.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|.+|+|||||+++|++.....+.........++....+..+++|+......++.....++||||||+.+|.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999876555544444334566777888889998887777777788999999999999999999
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC---------C
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF---------P 217 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~---------~ 217 (451)
.+++.+|++++|+|+.++...+..+.+..+...+.| +++++||+|+..+++ .+...+++.+.++..+. .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLP-IIVAINKIDRVGEED-LEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCC-eEEEEECCCCcchhc-HHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999998888888888888887888 789999999986333 23344456666665443 2
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
....+++++||+++ .|++++++.|.+.+|+|
T Consensus 159 ~~~~~v~~~Sa~~g----------~gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTG----------IGVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccC----------cCHHHHHHHHHhhCCCC
Confidence 34689999999998 89999999999988753
No 81
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.89 E-value=3.2e-22 Score=190.78 Aligned_cols=127 Identities=31% Similarity=0.429 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH---hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA---EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~---~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
||+++||+|+|||||+++|+.... ..|.... ..+..|..+.|+++++++......+.+.+..+++||||||.+|..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~-g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVED-GTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecC-CcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence 689999999999999999975422 2222221 134568889999999999988888888899999999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+..++..+|++++|+|++.+...++...+..+...++| +++++||+|+..
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~ 130 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRER 130 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCC
Confidence 999999999999999999999999999999999999999 557999999864
No 82
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.1e-22 Score=204.24 Aligned_cols=244 Identities=26% Similarity=0.350 Sum_probs=175.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee------------------C
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET------------------A 126 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~------------------~ 126 (451)
...++++||+|.|||-|+..|.+.....|... |+|......+|+. .
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeag----------------gitqqIgAt~fp~~ni~e~tk~~~~~~K~~~k 538 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAG----------------GITQQIGATYFPAENIREKTKELKKDAKKRLK 538 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccccccccc----------------ceeeeccccccchHHHHHHHHHHHhhhhhhcC
Confidence 46899999999999999999987655444432 4444443333321 1
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC------hHHHH
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE------DEELL 200 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~------~~~~~ 200 (451)
--.+.+||||||+.|.....++...||.+|+|||..+|+.+||.+.+.+++..+.| |||++||+|..- .....
T Consensus 539 vPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktp-FivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 539 VPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTP-FIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCC-eEEeehhhhhhcccccCCCchHH
Confidence 22478999999999999999999999999999999999999999999999999999 889999999762 11111
Q ss_pred -----------HHHHHHHHHH---HHhcCCC----------CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 201 -----------ELVEMELREL---LSFYKFP----------GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 201 -----------~~~~~~~~~~---l~~~~~~----------~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++..+..+ +...|++ ++.+.++|+||.+| +|+.+|+-+|.++.+
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sG----------eGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISG----------EGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccC----------CCcHHHHHHHHHHHH
Confidence 1111111111 1122322 23477899999999 999999999987643
Q ss_pred CC---CcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccC------------CCCceeEEEEEeecce
Q 013007 257 DP---ERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQ------------GPSLKTTVTGVEMFKK 321 (451)
Q Consensus 257 ~~---~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~------------~~~~~~~V~~I~~~~~ 321 (451)
.. .-..-..+...|..+-.++|.|+.+-..+..|.|+.||.+.+++.+. ....+.+|++-+.|+.
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtIRaLLtP~PlkElRVk~~Y~hhk 767 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTIRALLTPQPLKELRVKGTYVHHK 767 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHHHHhcCCcchHhhccccceeehh
Confidence 11 11234667889999999999999999999999999999999987532 0012345666666543
Q ss_pred -------------eccEEecCCeEEEE
Q 013007 322 -------------ILDRGEAGDNVGLL 335 (451)
Q Consensus 322 -------------~v~~a~aG~~v~l~ 335 (451)
.++.|.||-.+-+.
T Consensus 768 EvkaA~GiKI~A~~LEkaiaG~~l~Vv 794 (1064)
T KOG1144|consen 768 EVKAAQGIKIAAKDLEKAIAGTRLLVV 794 (1064)
T ss_pred HhhhhccchhhhcchHHHhcCCeeEEe
Confidence 45566777665544
No 83
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.2e-21 Score=194.94 Aligned_cols=130 Identities=25% Similarity=0.360 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...+||+++.|+|||||||.+.|..........-++.-+++|..++|+.||+|...+.+.+...++.+++||+|||-||.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 34689999999999999999999865443333344445578999999999999999888877788999999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
.+..++.+.+|+++++||+.+|+..||...++.+...+.. .++|+||||.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~-~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLK-PILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCc-eEEEEehhhh
Confidence 9999999999999999999999999999999999999988 5689999993
No 84
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.6e-20 Score=165.96 Aligned_cols=159 Identities=36% Similarity=0.442 Sum_probs=116.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---CeeEEEEecCChHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---KRHYAHVDCPGHADYVK 143 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---~~~i~iiDtPG~~~~~~ 143 (451)
.|+++|++|+|||||+++|++.... ....+++|.+.....++.. +..+++|||||+.+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~ 65 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA----------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN 65 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc----------------cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH
Confidence 5899999999999999999853111 1122345555544444443 67899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC-CCCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK-FPGDEIP 222 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~p 222 (451)
....++..+|++++|+|++++...++.+.+..+...++| +++|+||+|+.+.. .+.+.+.+..+..... ..+...+
T Consensus 66 ~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 66 MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVP-FIVALNKIDKPNAN--PERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEEceeccccc--HHHHHHHHHHhhccccccccCcCc
Confidence 888888999999999999998888888888888889999 77899999987521 1122222322221110 0123578
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++++||+++ .|+.+|+++|.++
T Consensus 143 ~~~~Sa~~~----------~gi~~l~~~l~~~ 164 (168)
T cd01887 143 IVPTSAKTG----------EGIDDLLEAILLL 164 (168)
T ss_pred EEEeecccC----------CCHHHHHHHHHHh
Confidence 999999998 8999999999765
No 85
>COG1159 Era GTPase [General function prediction only]
Probab=99.86 E-value=8.1e-21 Score=175.57 Aligned_cols=162 Identities=23% Similarity=0.258 Sum_probs=119.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
..--|+++|.+|+|||||+|+|.+. ..+++. +.. .+|...-..-+..++.++.|+||||...
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~------KisIvS---~k~------QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~ 69 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQ------KISIVS---PKP------QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH 69 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcC------ceEeec---CCc------chhhhheeEEEEcCCceEEEEeCCCCCCcch
Confidence 3457999999999999999999943 333321 111 2333322233556688999999999322
Q ss_pred -----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 -----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 -----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+.+....++..+|+++||||+.+++...+...+..++..+.| +++++||+|+..++..+..+. ..+-....
T Consensus 70 ~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~l~~~~---~~~~~~~~ 145 (298)
T COG1159 70 ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTVLLKLI---AFLKKLLP 145 (298)
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHHHHHHH---HHHHhhCC
Confidence 456666778899999999999999999999999999887788 668999999998655322222 22222333
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
+ ..++|+||++| .+++.|++.+..++|+.
T Consensus 146 f----~~ivpiSA~~g----------~n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 146 F----KEIVPISALKG----------DNVDTLLEIIKEYLPEG 174 (298)
T ss_pred c----ceEEEeecccc----------CCHHHHHHHHHHhCCCC
Confidence 3 47999999999 89999999999999853
No 86
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2.4e-21 Score=166.69 Aligned_cols=148 Identities=26% Similarity=0.354 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (451)
++|+++|.+|+|||||+|+|++.....| .-+|+|++.....+...+..+.|+|+||.-++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~----------------n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVG----------------NWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEE----------------ESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceec----------------CCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 4899999999999999999996532211 12389999888888888999999999993221
Q ss_pred --HHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 --VKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 --~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
-+-.... ....|++++|+||++ ..+....+..+..+++| +|+|+||+|+...... .-..+.+.+.++
T Consensus 65 ~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P-~vvvlN~~D~a~~~g~----~id~~~Ls~~Lg-- 135 (156)
T PF02421_consen 65 EEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIP-VVVVLNKMDEAERKGI----EIDAEKLSERLG-- 135 (156)
T ss_dssp HHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSS-EEEEEETHHHHHHTTE----EE-HHHHHHHHT--
T ss_pred cHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCC-EEEEEeCHHHHHHcCC----EECHHHHHHHhC--
Confidence 1111122 357999999999986 34555666777889999 7799999998753221 112334444444
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHH
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAV 251 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l 251 (451)
+|++++||.++ +|+++|+++|
T Consensus 136 ---~pvi~~sa~~~----------~g~~~L~~~I 156 (156)
T PF02421_consen 136 ---VPVIPVSARTG----------EGIDELKDAI 156 (156)
T ss_dssp ---S-EEEEBTTTT----------BTHHHHHHHH
T ss_pred ---CCEEEEEeCCC----------cCHHHHHhhC
Confidence 68999999999 9999999875
No 87
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=3.3e-20 Score=180.79 Aligned_cols=160 Identities=31% Similarity=0.440 Sum_probs=132.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
..++|+++|.||+|||||+|+|++. ...+. ....|+|.+.-...|++++++|.++||+|..+
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge------eR~Iv---------~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE------ERVIV---------SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC------ceEEe---------cCCCCccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 4689999999999999999999943 33332 23449999999999999999999999999433
Q ss_pred -------H-HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC-hHHHHHHHHHHHHHHH
Q 013007 141 -------Y-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE-DEELLELVEMELRELL 211 (451)
Q Consensus 141 -------~-~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~-~~~~~~~~~~~~~~~l 211 (451)
| ...+..++..+|++++|+||++|+..|+...+.++...|.+ +|+|+||+|+.+ ++...+..+++++..+
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l 320 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL 320 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh
Confidence 3 34556677889999999999999999999999999999999 678999999987 4466777888888877
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
..+++ .|++++||+++ .++.+|++++..
T Consensus 321 ~~l~~----a~i~~iSA~~~----------~~i~~l~~~i~~ 348 (444)
T COG1160 321 PFLDF----APIVFISALTG----------QGLDKLFEAIKE 348 (444)
T ss_pred ccccC----CeEEEEEecCC----------CChHHHHHHHHH
Confidence 77766 79999999998 666666666544
No 88
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=1e-19 Score=173.59 Aligned_cols=157 Identities=19% Similarity=0.169 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (451)
+|+++|++|+|||||+|+|++.. ... .....++|.+.....+...+.++.||||||+.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~------~~~---------vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK------ISI---------TSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc------Eee---------cCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 68999999999999999999541 111 011123333322222334556799999999643
Q ss_pred --HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 141 --YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 141 --~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
+.+.+..++..+|++++|+|+++....+ ...+..+...+.| +++|+||+|+.+.++.. +.+..+.+..++
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~~~----~~~~~~~~~~~~-- 138 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDKLL----PLIDKYAILEDF-- 138 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCC-EEEEEECeeCCCHHHHH----HHHHHHHhhcCC--
Confidence 2334556778999999999999865443 4556666777888 67899999998543322 233344443333
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.+++++||++| .|+++|+++|.+.+|+.
T Consensus 139 --~~v~~iSA~~g----------~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 139 --KDIVPISALTG----------DNTSFLAAFIEVHLPEG 166 (270)
T ss_pred --CceEEEecCCC----------CCHHHHHHHHHHhCCCC
Confidence 37999999999 99999999999988743
No 89
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=4.4e-20 Score=188.23 Aligned_cols=161 Identities=29% Similarity=0.349 Sum_probs=121.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
...+|+++|++|+|||||+|+|++.. ........|+|.+.....+...+..+.+|||||+.++
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~---------------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEE---------------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC---------------eeecCCCCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 45799999999999999999998431 1111234477877766667777888999999996432
Q ss_pred --------H-HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 142 --------V-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 142 --------~-~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
. ..+..++..+|++++|+|+.++...++.+.+..+...+.| +|+|+||+|+.++++..+.+.+++...+.
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP 314 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence 1 2334577889999999999999999999999988888988 77999999998434445555555555444
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+ ..|++++||++| .|+.++++.+.+.
T Consensus 315 ~~~----~~~vi~~SA~~g----------~~v~~l~~~i~~~ 342 (429)
T TIGR03594 315 FLD----FAPIVFISALTG----------QGVDKLLDAIDEV 342 (429)
T ss_pred cCC----CCceEEEeCCCC----------CCHHHHHHHHHHH
Confidence 332 379999999998 6777777666553
No 90
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=177.26 Aligned_cols=153 Identities=27% Similarity=0.324 Sum_probs=124.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
..|+++|.+|+|||||+|+|+ |+..+++.+. .|+|.+..+...++.++.+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~------g~r~AIV~D~---------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLT------GRRIAIVSDT---------PGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHh------CCeeeEeecC---------CCCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 479999999999999999999 5555554333 39999988888888899999999999553
Q ss_pred H----HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 Y----VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~----~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
+ ...+..++..||++|||||+..|+.+++.+...+++..++| +|+|+||+|-...++ ... -+..+|+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kp-viLvvNK~D~~~~e~-------~~~-efyslG~ 139 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKP-VILVVNKIDNLKAEE-------LAY-EFYSLGF 139 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEEcccCchhhh-------hHH-HHHhcCC
Confidence 3 34455667889999999999999999999999999977788 779999999764222 122 2345566
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
-.++++||.+| .|+.+|++.+.+.+|
T Consensus 140 ----g~~~~ISA~Hg----------~Gi~dLld~v~~~l~ 165 (444)
T COG1160 140 ----GEPVPISAEHG----------RGIGDLLDAVLELLP 165 (444)
T ss_pred ----CCceEeehhhc----------cCHHHHHHHHHhhcC
Confidence 46899999999 999999999999986
No 91
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7.4e-19 Score=175.07 Aligned_cols=131 Identities=28% Similarity=0.387 Sum_probs=108.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccce-eeeeccCCchhhhhcCceEEeeEEEee-----eCCeeEEEEecC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA-IAFDEIDKAPEEKKRGITIATAHVEYE-----TAKRHYAHVDCP 136 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~-~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~i~iiDtP 136 (451)
...+||+++||-.||||+|+..|........+... .....+|.+..|++||.++.......- ...+-++++|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 35689999999999999999999765443332211 122357889999999999987654432 223568999999
Q ss_pred ChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 137 GHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 137 G~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
||-+|..++..+++.+|++++|||+.+|+.-+|...++.+-....| +++|+||+|+.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~-i~vviNKiDRL 262 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLP-IVVVINKVDRL 262 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCc-EEEEEehhHHH
Confidence 9999999999999999999999999999999999999999999999 78999999975
No 92
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=3e-19 Score=182.34 Aligned_cols=159 Identities=29% Similarity=0.410 Sum_probs=121.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
..++|+++|++|+|||||+|+|++. +........|+|.+.....+...+..+.+|||||+.+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~---------------~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE---------------ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC---------------CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcc
Confidence 4689999999999999999999843 1111223457888877777777888999999999532
Q ss_pred -------H-HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 141 -------Y-VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 141 -------~-~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
| ...+..++..+|++|+|+|+.++...|+...+..+...+.| +|+++||+|+.+. +..+.+.+++...+.
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~-~~~~~~~~~~~~~l~ 314 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRA-LVIVVNKWDLVDE-KTMEEFKKELRRRLP 314 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCCCH-HHHHHHHHHHHHhcc
Confidence 2 23455678899999999999999999999999999888988 7789999999853 334455555555544
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.. ...|++++||+++ .|+.++++.+.+
T Consensus 315 ~~----~~~~i~~~SA~~~----------~gv~~l~~~i~~ 341 (435)
T PRK00093 315 FL----DYAPIVFISALTG----------QGVDKLLEAIDE 341 (435)
T ss_pred cc----cCCCEEEEeCCCC----------CCHHHHHHHHHH
Confidence 33 2479999999998 666666666544
No 93
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=2.5e-19 Score=156.29 Aligned_cols=148 Identities=25% Similarity=0.253 Sum_probs=109.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH-----
Q 013007 69 GTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK----- 143 (451)
Q Consensus 69 ~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~----- 143 (451)
+++|++|+|||||+++|.+... . ..+...++|.+.........+..+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD------A---------IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE------E---------eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 5799999999999999984310 0 0111234555555555566678899999999887433
Q ss_pred ---HHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 144 ---NMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 144 ---~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
.....+..+|++++|+|+.++......+++..+...+.| +++|+||+|+.+.... ...+..++.
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~--------~~~~~~~~~---- 132 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKP-VILVVNKVDNIKEEDE--------AAEFYSLGF---- 132 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCC-EEEEEECcccCChHHH--------HHHHHhcCC----
Confidence 445567889999999999988877788888888888888 7799999999864332 122333333
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++|++++ .|++++++.|.+.
T Consensus 133 ~~~~~~Sa~~~----------~gv~~l~~~l~~~ 156 (157)
T cd01894 133 GEPIPISAEHG----------RGIGDLLDAILEL 156 (157)
T ss_pred CCeEEEecccC----------CCHHHHHHHHHhh
Confidence 36899999998 8999999998764
No 94
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=5.5e-19 Score=156.52 Aligned_cols=160 Identities=28% Similarity=0.352 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (451)
.++|+++|++|+|||||+++|++.... ..+..++.+.......+...+..+.+|||||+.+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERV---------------IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccce---------------eccCCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 468999999999999999999854110 01112344444444445566778999999996432
Q ss_pred -------H-HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH-HHHHHHHHHHHHHHH
Q 013007 142 -------V-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELVEMELRELLS 212 (451)
Q Consensus 142 -------~-~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~~~~~~~~~l~ 212 (451)
. ..+...+..+|++++|+|+.++...+....+..+...+.| +++++||+|+.+.. ...+.+.+.+.+.+.
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcc
Confidence 1 2334566789999999999998877777777777777888 77899999998642 233333334433332
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.. ...+++++||+++ +|+.++++++.+.
T Consensus 146 ~~----~~~~~~~~Sa~~~----------~~i~~~~~~l~~~ 173 (174)
T cd01895 146 FL----DYAPIVFISALTG----------QGVDKLFDAIDEV 173 (174)
T ss_pred cc----cCCceEEEeccCC----------CCHHHHHHHHHHh
Confidence 21 2468999999998 8999999988653
No 95
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=1.1e-19 Score=160.50 Aligned_cols=161 Identities=18% Similarity=0.153 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
||+++|+.|+|||||+++|.+..... ...... ....|+......+...+..+.+|||||+.+|.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~----------~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY----------KGLPPS--KITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc----------cCCccc--ccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 68999999999999999998542110 000011 112233333334555678899999999999998888
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
..+..+|++++|+|+++... ......+..+. ..++| +++++||+|+.+... .+.+.+.+....+..+. ..+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~-~~~~~~~~~~~~~~~~~--~~~ 144 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALS-VEEIKEVFQDKAEEIGR--RDC 144 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCC-HHHHHHHhccccccccC--Cce
Confidence 88999999999999986321 12222222222 24678 779999999865321 12222222222222222 356
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+++++||++| .|+++++++|.+
T Consensus 145 ~~~~~Sa~~g----------~gv~e~~~~l~~ 166 (167)
T cd04160 145 LVLPVSALEG----------TGVREGIEWLVE 166 (167)
T ss_pred EEEEeeCCCC----------cCHHHHHHHHhc
Confidence 8999999999 999999998854
No 96
>PRK15494 era GTPase Era; Provisional
Probab=99.81 E-value=1e-18 Score=171.43 Aligned_cols=160 Identities=20% Similarity=0.185 Sum_probs=113.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH--
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (451)
+...+|+++|++|+|||||+|+|.+... .. .....+.|.+.....+..++.++.||||||+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~------~i---------vs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL------SI---------VTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCce------ee---------ccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCc
Confidence 4567999999999999999999984311 10 011223444433334556678899999999742
Q ss_pred ------HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 141 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 141 ------~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
+.+....++..+|++++|+|+.++........+..+...+.|. |+|+||+|+.+. . .. ++.+.+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~-IlViNKiDl~~~-~-~~----~~~~~l~~~ 187 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVP-IFLLNKIDIESK-Y-LN----DIKAFLTEN 187 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEEhhcCccc-c-HH----HHHHHHHhc
Confidence 3333445578899999999998877776666777777778885 579999998642 1 22 333444432
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
. ...+++++||++| .|+++|+++|.+.+|+
T Consensus 188 ~---~~~~i~~iSAktg----------~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 188 H---PDSLLFPISALSG----------KNIDGLLEYITSKAKI 217 (339)
T ss_pred C---CCcEEEEEeccCc----------cCHHHHHHHHHHhCCC
Confidence 2 1257999999999 9999999999998874
No 97
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.80 E-value=2.2e-18 Score=152.07 Aligned_cols=156 Identities=16% Similarity=0.133 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~ 142 (451)
.++|+++|+.|+|||||+++|..... ..+.....+.+.....+...+ ..+.+|||||+++|.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTF----------------SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCC----------------cccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH
Confidence 57999999999999999999974311 001111122222222233333 578999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......++.+|++++|+|+++...-+. ...+..+.. .++| +++|+||+|+.+.++. ..++..++.+.++.
T Consensus 67 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-- 140 (165)
T cd01864 67 TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQREV---LFEEACTLAEKNGM-- 140 (165)
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECccccccccc---CHHHHHHHHHHcCC--
Confidence 888888899999999999987543222 223333332 3567 7789999999753221 11234455555443
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++||++| .|++++++.+.+.
T Consensus 141 --~~~~e~Sa~~~----------~~v~~~~~~l~~~ 164 (165)
T cd01864 141 --LAVLETSAKES----------QNVEEAFLLMATE 164 (165)
T ss_pred --cEEEEEECCCC----------CCHHHHHHHHHHh
Confidence 46899999998 8999999988754
No 98
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=1.9e-18 Score=176.26 Aligned_cols=154 Identities=25% Similarity=0.304 Sum_probs=120.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh--------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH-------- 138 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~-------- 138 (451)
+|+++|++|+|||||+|+|++.. .+. .+...|+|.+.......+.+..+.+|||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~------~~~---------v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR------DAI---------VSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC------cce---------ecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 48999999999999999998431 111 1123467777666666777889999999996
Q ss_pred HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 139 ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 139 ~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
+.+...+..++..+|++++|+|+.++......+.+..++..+.| +++|+||+|+.+.+.. ..+ +..+++
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~~~-------~~~-~~~lg~-- 134 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKP-VILVANKIDGKKEDAV-------AAE-FYSLGF-- 134 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-EEEEEECccCCccccc-------HHH-HHhcCC--
Confidence 55666777788899999999999999999998888999888998 7799999998753321 111 233444
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.+++++||.+| .|+.+|++.+.+.++..
T Consensus 135 --~~~~~vSa~~g----------~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 135 --GEPIPISAEHG----------RGIGDLLDAILELLPEE 162 (429)
T ss_pred --CCeEEEeCCcC----------CChHHHHHHHHHhcCcc
Confidence 46899999999 89999999999888753
No 99
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.1e-18 Score=177.06 Aligned_cols=161 Identities=20% Similarity=0.278 Sum_probs=115.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh-----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----- 138 (451)
..++|+++|++|+|||||+|+|++.. ....+...|+|.+.....+...+..+.||||||.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~---------------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE---------------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC---------------cccccCCCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 35899999999999999999998531 1111223467776655566677888999999995
Q ss_pred ----HHHHHHH--HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 139 ----ADYVKNM--ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 139 ----~~~~~~~--~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
.++...+ ..++..+|++++|+|++++...+....+..+...++| +|+|+||+|+.+.+. ...+.+++.+.+.
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~-~~~~~~~i~~~l~ 352 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDR-RYYLEREIDRELA 352 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCChhH-HHHHHHHHHHhcc
Confidence 2333222 3456789999999999999988888888888888888 779999999986322 2223334433333
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.. ...|++++||++| .|++++++.+.+.+
T Consensus 353 ~~----~~~~~~~~SAk~g----------~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QV----PWAPRVNISAKTG----------RAVDKLVPALETAL 381 (472)
T ss_pred cC----CCCCEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 22 2378999999999 77777777776544
No 100
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=7.1e-18 Score=163.04 Aligned_cols=160 Identities=26% Similarity=0.289 Sum_probs=110.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD---- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~---- 140 (451)
...|+++|.+|+|||||+|+|++. ..... .+ ..+.|.......+..++.++.|+||||+.+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~------~~~~v---s~------~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~ 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQ------KISIV---SP------KPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCC------ceeec---CC------CCCcccccEEEEEEcCCceEEEEECCCCCCchhH
Confidence 457999999999999999999853 11111 00 112222221222233457899999999533
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
+...+..++..+|++++|+|+++++.....+.+..+...+.| +++|+||+|+....+... ..+..+.+..+
T Consensus 70 l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~p-vilVlNKiDl~~~~~~l~---~~~~~l~~~~~- 144 (292)
T PRK00089 70 LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTP-VILVLNKIDLVKDKEELL---PLLEELSELMD- 144 (292)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCC-EEEEEECCcCCCCHHHHH---HHHHHHHhhCC-
Confidence 344555677889999999999997777777777777777788 678999999984333222 22333333333
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
..+++++||+++ .|+++|++.|.+.+|+
T Consensus 145 ---~~~i~~iSA~~~----------~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 ---FAEIVPISALKG----------DNVDELLDVIAKYLPE 172 (292)
T ss_pred ---CCeEEEecCCCC----------CCHHHHHHHHHHhCCC
Confidence 367999999998 8999999999998874
No 101
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=2.2e-18 Score=153.43 Aligned_cols=156 Identities=22% Similarity=0.191 Sum_probs=104.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|++|+|||||+++|.+... . ..+...|. ....+..++..+.+|||||+++|.
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-------------~--~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~ 72 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-------------D--TISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR 72 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-------------C--CcCCcccc----ceEEEEECCEEEEEEECCCCHHHH
Confidence 3457999999999999999999984300 0 00011121 112233456789999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHH----HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
..+...+..+|++++|+|+++.. .......+..+ ...++| +++|+||+|+.+... .+++.++++.....
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~ 146 (173)
T cd04154 73 PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGAT-LLILANKQDLPGALS-----EEEIREALELDKIS 146 (173)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECcccccCCC-----HHHHHHHhCccccC
Confidence 77778888999999999998742 11222222222 224667 779999999975321 12333444332222
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
...++++++||++| .|++++++++.+
T Consensus 147 ~~~~~~~~~Sa~~g----------~gi~~l~~~l~~ 172 (173)
T cd04154 147 SHHWRIQPCSAVTG----------EGLLQGIDWLVD 172 (173)
T ss_pred CCceEEEeccCCCC----------cCHHHHHHHHhc
Confidence 34578999999999 999999998753
No 102
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.78 E-value=1.9e-18 Score=138.34 Aligned_cols=90 Identities=34% Similarity=0.628 Sum_probs=80.2
Q ss_pred cccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-----C-C--ccccCCCCEEEEEEEeCCeEeee
Q 013007 356 VKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-----G-D--VKMVMPGDNVNAAFELISPLPLQ 427 (451)
Q Consensus 356 ~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----~-~--~~~l~~g~~~~v~~~~~~p~~~~ 427 (451)
+.++++|+|+|.+|+++ ++|.+||++++|+++.+++|++..+ . + |+++++||.+.|+|+|++|+|++
T Consensus 2 ~k~~~~f~A~v~vl~~~-----~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~~~~~~p~~l~~g~~a~v~l~~~~pi~ve 76 (99)
T PF03143_consen 2 IKAVNRFEAQVIVLDHP-----KPISPGYQPVLHIHTADVPCRIVKIISKIDTGKKKPKFLKPGDRAVVELEFQKPICVE 76 (99)
T ss_dssp SEEEEEEEEEEEESSGS-----S-BETTEEEEEEETTEEEEEEEEEEEEEESTTTEE-SEB-TTEEEEEEEEEEEEEEET
T ss_pred CcccCEEEEEEEEEcCC-----ccccCCCccceEEeeceeeEEEEeeeeccccccccccccccccccccceeeccceeee
Confidence 46789999999999984 7999999999999999999999877 2 2 38999999999999999999999
Q ss_pred cCCeEEEeeCCcEEEEEEEEeec
Q 013007 428 QGQRFALREGGRTVGAGVVSKVI 450 (451)
Q Consensus 428 ~~~rfvlr~~~~tig~G~I~~~~ 450 (451)
+++||+||++|+|+|+|.|++|+
T Consensus 77 ~~~Rf~lR~~~~Tia~G~V~~vi 99 (99)
T PF03143_consen 77 PFSRFILRDGGKTIAVGVVTKVI 99 (99)
T ss_dssp TTTEEEEEETTEEEEEEEEEEE-
T ss_pred cCceEEEccCCeEEEEEEEEEeC
Confidence 99999999999999999999985
No 103
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.78 E-value=5.3e-18 Score=149.15 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|++|+|||||++++......... ....+.++......+......+.+|||||+++|....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQ--------------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--------------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 48999999999999999999843111000 0011122222222233334568899999999999888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
..++..+|++++|+|+++....+. .+.+..+... ++| +++|+||+|+... . .++..++.+.. ..|
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~--~----~~~~~~~~~~~-----~~~ 134 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIP-CIVVANKIDLDPS--V----TQKKFNFAEKH-----NLP 134 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEECccCchh--H----HHHHHHHHHHc-----CCe
Confidence 888999999999999987544333 3333444433 677 7799999998532 1 11223333333 358
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++||++| .|++++++.+.+.+
T Consensus 135 ~~~~Sa~~~----------~gv~~l~~~l~~~~ 157 (161)
T cd04124 135 LYYVSAADG----------TNVVKLFQDAIKLA 157 (161)
T ss_pred EEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 999999999 89999999887654
No 104
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=3.2e-18 Score=151.65 Aligned_cols=153 Identities=22% Similarity=0.259 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCe-eEEEEecCChHH-----
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKR-HYAHVDCPGHAD----- 140 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~-~i~iiDtPG~~~----- 140 (451)
+|+++|++|+|||||+++|.+.....+. ..+.|.......+...+. .+.||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 6999999999999999999853211110 112333332223344454 899999999632
Q ss_pred --HHHHHHHhcccCCEEEEEEeCCCC-CC-ccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH
Q 013007 141 --YVKNMITGAAQMDGGILVVSAPDG-PM-PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 141 --~~~~~~~~~~~~d~~ilVvda~~g-~~-~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l 211 (451)
+...+.+.+..+|++++|+|+++. -. .+.......+.. .+.| +++|+||+|+.+.....+ .+..+.
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~----~~~~~~ 140 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDLLDEEELFE----LLKELL 140 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccc-cEEEEEchhcCCchhhHH----HHHHHH
Confidence 344455556679999999999875 22 222222233332 2566 678999999976443222 233333
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+.. ...+++++||+++ .|+.++++.+.+.
T Consensus 141 ~~~----~~~~~~~~Sa~~~----------~gi~~l~~~i~~~ 169 (170)
T cd01898 141 KEL----WGKPVFPISALTG----------EGLDELLRKLAEL 169 (170)
T ss_pred hhC----CCCCEEEEecCCC----------CCHHHHHHHHHhh
Confidence 332 2467999999998 8999999998764
No 105
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.77 E-value=3.1e-18 Score=134.99 Aligned_cols=89 Identities=38% Similarity=0.656 Sum_probs=83.6
Q ss_pred CCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEecccccc
Q 013007 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRE 342 (451)
Q Consensus 263 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~ 342 (451)
++||+|+|+++|++++.|++++|+|++|.+++||++.++|.+ ..++|++|+.++.++++|.|||+|++.|++++..
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~----~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~ 77 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG----VTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKK 77 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC----cEEEEEEEEECCcCcCEECCCCEEEEEECCCCHH
Confidence 579999999999999999999999999999999999999954 5799999999999999999999999999999889
Q ss_pred CCCCCeEEecCCC
Q 013007 343 DVQRGQVIAKPGS 355 (451)
Q Consensus 343 ~i~~G~vl~~~~~ 355 (451)
++++||+||+++.
T Consensus 78 ~v~~G~vl~~~~~ 90 (91)
T cd03693 78 DIKRGDVAGDSKN 90 (91)
T ss_pred HcCCcCEEccCCC
Confidence 9999999998753
No 106
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=1e-17 Score=150.11 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=103.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh---
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH--- 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~--- 138 (451)
+....+|+++|++|+|||||+++|.+... .. ......|.|.+.....+ + ..+.+|||||+
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~-----~~---------~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~ 77 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKK-----LA---------RTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYA 77 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCC-----cc---------cccCCCCcceEEEEEEe--C-CcEEEEeCCCCccc
Confidence 34567999999999999999999985310 00 00112245554443333 2 36999999995
Q ss_pred -------HHHHHHHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 139 -------ADYVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 139 -------~~~~~~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
.+|...+...+ ..+|++++|+|++++...++.+.+..+...++| +++++||+|+.+..+. +...++++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~-~~~~~~i~ 155 (179)
T TIGR03598 78 KVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIP-VLIVLTKADKLKKSEL-NKQLKKIK 155 (179)
T ss_pred cCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHH-HHHHHHHH
Confidence 33443333333 346899999999998888888888888888988 7789999999864433 33445666
Q ss_pred HHHHhcCCCCCCCCeeecccccc
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
+.++..+ ...+++++||++|
T Consensus 156 ~~l~~~~---~~~~v~~~Sa~~g 175 (179)
T TIGR03598 156 KALKKDA---DDPSVQLFSSLKK 175 (179)
T ss_pred HHHhhcc---CCCceEEEECCCC
Confidence 6666643 3468999999998
No 107
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=5.3e-18 Score=150.13 Aligned_cols=157 Identities=18% Similarity=0.118 Sum_probs=103.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
+...+|+++|+.|+|||||+++|++.....+. ...++.+.....+...+ ..+.+|||||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ----------------GATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCC----------------CCceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 45689999999999999999999854221111 11122222222233333 4578999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.......+..+|++++|+|.+++...+. ...+..+. ..++| ++++.||+|+.+..+...... +.+.+..
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~~~~i~~~~~---~~~~~~~-- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVI-TILVGNKIDLAERREVSQQRA---EEFSDAQ-- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccccCHHHH---HHHHHHc--
Confidence 99988888999999999999986432221 12222222 23577 568999999875333222222 2222221
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++++||+++ .|+.++++.+.+.
T Consensus 143 ---~~~~~~~Sa~~~----------~gv~~l~~~i~~~ 167 (169)
T cd04114 143 ---DMYYLETSAKES----------DNVEKLFLDLACR 167 (169)
T ss_pred ---CCeEEEeeCCCC----------CCHHHHHHHHHHH
Confidence 257999999999 8999999998764
No 108
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=5.6e-18 Score=148.42 Aligned_cols=141 Identities=23% Similarity=0.337 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh----HHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----ADYV 142 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----~~~~ 142 (451)
+|+++|++|+|||||+++|.+.. . . . ..|. ...+. .. .+|||||. .++.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~------~------~-----~---~~~~---~v~~~--~~--~~iDtpG~~~~~~~~~ 55 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY------T------L-----A---RKTQ---AVEFN--DK--GDIDTPGEYFSHPRWY 55 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC------c------c-----C---ccce---EEEEC--CC--CcccCCccccCCHHHH
Confidence 79999999999999999987421 0 0 0 0111 11222 11 37999995 6788
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
..+..++..+|++++|+|++++........+.. ..+.| +++++||+|+.+.+ . +.+.++++..++ ..|
T Consensus 56 ~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--~----~~~~~~~~~~~~---~~p 123 (158)
T PRK15467 56 HALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKR-QIAVISKTDMPDAD--V----AATRKLLLETGF---EEP 123 (158)
T ss_pred HHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCC-eEEEEEccccCccc--H----HHHHHHHHHcCC---CCC
Confidence 888888899999999999998765444433332 23567 77999999986421 1 234456666654 269
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++||+++ .|+++|++++.+.++
T Consensus 124 ~~~~Sa~~g----------~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 124 IFELNSHDP----------QSVQQLVDYLASLTK 147 (158)
T ss_pred EEEEECCCc----------cCHHHHHHHHHHhch
Confidence 999999999 999999999988765
No 109
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=6.9e-18 Score=148.39 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|++++|||||+++|++..... ......|.+.......+......+.+|||||+++|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE--------------NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--------------CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 689999999999999999998542111 011111333333344444445678999999999998887
Q ss_pred HHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...++.+|++++|+|+++.. ..+....+..+... ++| +++++||+|+.+..... .++...+.+..+ .
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~~---~~~~~~~~~~~~-----~ 138 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLESKRQVS---TEEAQEYADENG-----L 138 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccCcCC---HHHHHHHHHHcC-----C
Confidence 77888999999999998642 22333344444433 356 77899999987421110 113334444433 5
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+++++||++| .|+.++++.|.+.+|
T Consensus 139 ~~~~~Sa~~~----------~~v~~l~~~l~~~l~ 163 (163)
T cd01860 139 LFFETSAKTG----------ENVNELFTEIAKKLP 163 (163)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHhC
Confidence 7999999998 899999999987653
No 110
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.77 E-value=6e-18 Score=148.84 Aligned_cols=157 Identities=20% Similarity=0.162 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|.+|+|||||++++.+...... ..+.. +... .....+......+.+|||||+++|...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~-----------~~~t~---~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD-----------YDPTI---EDSY-TKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc-----------cCCCc---cceE-EEEEEECCEEEEEEEEECCCCcchhHH
Confidence 47999999999999999999985421000 00000 0000 111122222356889999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
+...+..+|++++|+|+++....+ ....+..+. ..++| +++++||+|+....... .++..++.+..+
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~~~~~~~---- 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFP-MILVGNKADLEHQRKVS---REEGQELARKLK---- 138 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccccccceec---HHHHHHHHHHcC----
Confidence 888889999999999998743211 122222222 23677 77899999987532211 123444555432
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||++| .|+.++++.|...+
T Consensus 139 -~~~~~~Sa~~~----------~~i~~l~~~l~~~~ 163 (164)
T cd04145 139 -IPYIETSAKDR----------LNVDKAFHDLVRVI 163 (164)
T ss_pred -CcEEEeeCCCC----------CCHHHHHHHHHHhh
Confidence 57999999998 89999999987643
No 111
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=1.1e-17 Score=147.93 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
++|+++|++|+|||||+++|++.... .+...+.|.......+...+..++||||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE----------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc----------------cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 48999999999999999999854211 011123344444334444567899999999842
Q ss_pred --HH-HHHHHhc-ccCCEEEEEEeCCCCCC---ccHHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHH
Q 013007 141 --YV-KNMITGA-AQMDGGILVVSAPDGPM---PQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 141 --~~-~~~~~~~-~~~d~~ilVvda~~g~~---~~t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l 211 (451)
+. ......+ ..+|++++|+|+++... ....+.+..+... +.| +|+|+||+|+.+..+..+ ..++.
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl~~~~~~~~-----~~~~~ 138 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDLLTFEDLSE-----IEEEE 138 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCC-eEEEEEccccCchhhHHH-----HHHhh
Confidence 11 1122222 23689999999987432 1222334444443 677 789999999976433211 22222
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+. ...+++++||+++ .|++++++++.+.+
T Consensus 139 ~~-----~~~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 167 (168)
T cd01897 139 EL-----EGEEVLKISTLTE----------EGVDEVKNKACELL 167 (168)
T ss_pred hh-----ccCceEEEEeccc----------CCHHHHHHHHHHHh
Confidence 21 2468999999999 99999999987654
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.77 E-value=5.7e-18 Score=148.69 Aligned_cols=154 Identities=19% Similarity=0.269 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|.+++|||||+++|++...... . .....|.+. ..+...+..+.+|||||+.+|.....
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~----~---------~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~ 63 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ----I---------IVPTVGFNV----ESFEKGNLSFTAFDMSGQGKYRGLWE 63 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc----e---------ecCccccce----EEEEECCEEEEEEECCCCHhhHHHHH
Confidence 589999999999999999985311000 0 000112221 22345677899999999999988888
Q ss_pred HhcccCCEEEEEEeCCCCCCc-cHHHHHHHHH------HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPMP-QTKEHILLAR------QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~------~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
..+..+|++++|+|+++.... .....+..+. ..++| +++|+||+|+.+... .+ ++.+.+........
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~-~~----~~~~~l~~~~~~~~ 137 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDALT-AV----KITQLLGLENIKDK 137 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCCC-HH----HHHHHhCCccccCc
Confidence 888999999999999875321 1222222221 13677 779999999975321 11 12222211111112
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
..+++++||++| .|+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g----------~gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTG----------EGLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCC----------CchHHHHHHHhc
Confidence 356899999999 999999999854
No 113
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.5e-17 Score=170.84 Aligned_cols=156 Identities=24% Similarity=0.245 Sum_probs=116.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA---- 139 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~---- 139 (451)
...+|+++|.+|+|||||+|+|++.. . ...+...|+|.+.....+.+.+..+.+|||||++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~------~---------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRR------E---------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK 101 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcC------c---------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch
Confidence 34689999999999999999998431 1 1112234777777666667778889999999975
Q ss_pred ----HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 ----DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ----~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.+...+..++..+|++|+|+|++++......+.+..+...++| +++|+||+|+...+. +..++. .++
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~p-iilV~NK~Dl~~~~~-------~~~~~~-~~g 172 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKP-VILAANKVDDERGEA-------DAAALW-SLG 172 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEECccCCccch-------hhHHHH-hcC
Confidence 2445556678899999999999998877777777888888888 779999999864211 111121 234
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+. ..+++||++| .|+.+|++.|.+.++.
T Consensus 173 ~~----~~~~iSA~~g----------~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG----EPHPVSALHG----------RGVGDLLDAVLAALPE 200 (472)
T ss_pred CC----CeEEEEcCCC----------CCcHHHHHHHHhhccc
Confidence 42 2469999999 8999999999988764
No 114
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.76 E-value=1.1e-17 Score=146.98 Aligned_cols=153 Identities=18% Similarity=0.232 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEee--eCCeeEEEEecCChHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYE--TAKRHYAHVDCPGHADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~--~~~~~i~iiDtPG~~~~ 141 (451)
++|+++|..++|||||+++|++..... +..+.+..+. ....+. .....+.+|||||+++|
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 64 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK----------------DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH
Confidence 489999999999999999998531110 0111222222 122222 22457899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHH--HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLAR--QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~--~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.......++.+|++++|+|+++....+....| ..+. ..++| +++|+||+|+....... .++..++.+.++
T Consensus 65 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~v~---~~~~~~~~~~~~--- 137 (162)
T cd04106 65 DAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIP-MVLVQTKIDLLDQAVIT---NEEAEALAKRLQ--- 137 (162)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhcccccCCC---HHHHHHHHHHcC---
Confidence 88888889999999999999874322222222 2222 13678 77999999987532211 123445555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.|++++||+++ .|++++++.|.+
T Consensus 138 --~~~~~~Sa~~~----------~~v~~l~~~l~~ 160 (162)
T cd04106 138 --LPLFRTSVKDD----------FNVTELFEYLAE 160 (162)
T ss_pred --CeEEEEECCCC----------CCHHHHHHHHHH
Confidence 47999999998 899999998865
No 115
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=1.1e-17 Score=145.85 Aligned_cols=147 Identities=24% Similarity=0.262 Sum_probs=102.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH---
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV--- 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~--- 142 (451)
++|+++|++|+|||||+++|++... .. .....+++.+.....+...+..+++|||||+.++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR------AI---------VSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce------Ee---------ccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 4899999999999999999984310 00 01123555555555556667789999999976643
Q ss_pred -----HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 -----KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 -----~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
..+...+..+|++++|+|+++.........+.. ..+.| +++|+||+|+.+.... . ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~-vi~v~nK~D~~~~~~~-----------~----~~ 128 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKP-IIVVLNKSDLLPDSEL-----------L----SL 128 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCC-EEEEEEchhcCCcccc-----------c----cc
Confidence 234456778999999999997544443333322 44666 7899999999864321 1 11
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
....+++++||.++ .++++|+++|.+.+
T Consensus 129 ~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~~ 156 (157)
T cd04164 129 LAGKPIIAISAKTG----------EGLDELKEALLELA 156 (157)
T ss_pred cCCCceEEEECCCC----------CCHHHHHHHHHHhh
Confidence 13578999999998 89999999987643
No 116
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.76 E-value=5e-18 Score=148.35 Aligned_cols=147 Identities=24% Similarity=0.291 Sum_probs=101.8
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH-----
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN----- 144 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~----- 144 (451)
++|++|+|||||+++|++.... .....++|++.....++..+..+.+|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~----------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK----------------VGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc----------------ccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 5899999999999999854111 1112366776655556666788999999998876431
Q ss_pred -HHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 145 -MITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 145 -~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
....+ ..+|++++|+|+.+. .+....+..+...++| +++|+||+|+.+...... ....+.+.++ .
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~~~----~~~~~~~~~~-----~ 132 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLP-VVVALNMIDEAEKRGIKI----DLDKLSELLG-----V 132 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCC-EEEEEehhhhcccccchh----hHHHHHHhhC-----C
Confidence 22333 489999999999863 2333444455667888 678999999976432211 2223333332 5
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+++++||.++ .|+.++++.|...
T Consensus 133 ~~~~iSa~~~----------~~~~~l~~~l~~~ 155 (158)
T cd01879 133 PVVPTSARKG----------EGIDELKDAIAEL 155 (158)
T ss_pred CeEEEEccCC----------CCHHHHHHHHHHH
Confidence 8999999998 8899999988764
No 117
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.76 E-value=7.9e-18 Score=147.81 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
+||+++|++++|||||+++|.+........ ...+.........+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--------------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 489999999999999999998542111100 001122222222233233568899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...++.+|++++|+|+++....+. ...+..+. ..++| ++++.||+|+...... ..++...+.+..+ .
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~~---~~~~~~~~~~~~~-----~ 137 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLADQREV---TFLEASRFAQENG-----L 137 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcchhccC---CHHHHHHHHHHcC-----C
Confidence 888899999999999988544332 22223332 23677 7799999998752221 1123444555443 5
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+++++||+++ .|+.++++.+.+.
T Consensus 138 ~~~~~Sa~~~----------~~i~~~~~~~~~~ 160 (161)
T cd04113 138 LFLETSALTG----------ENVEEAFLKCARS 160 (161)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHh
Confidence 7999999998 8999999988753
No 118
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.76 E-value=1.2e-17 Score=132.41 Aligned_cols=91 Identities=43% Similarity=0.828 Sum_probs=85.7
Q ss_pred ccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCC
Q 013007 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGG 438 (451)
Q Consensus 359 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~ 438 (451)
+++|+|++.+|++++++++.+|+.||++++|+++.++.|++..++++.++++||.+.|+|+|.+|+++++++||+||+++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~~ 82 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDGN 82 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeCCEEEEEECC
Confidence 68999999999987777778999999999999999999999999778889999999999999999999999999999999
Q ss_pred cEEEEEEEEee
Q 013007 439 RTVGAGVVSKV 449 (451)
Q Consensus 439 ~tig~G~I~~~ 449 (451)
+|||+|.|+++
T Consensus 83 ~tvg~G~V~~~ 93 (93)
T cd03706 83 RTIGTGLVTDT 93 (93)
T ss_pred EEEEEEEEEeC
Confidence 99999999874
No 119
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.75 E-value=1.5e-17 Score=147.59 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|++|+|||||+++|.+........ ...+.+.......+......+.+|||||+++|....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--------------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--------------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence 489999999999999999998542111100 000111111122222223456799999999999888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHH--HHHHHc------CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHI--LLARQV------GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l--~~~~~~------~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
...++.+|++|+|+|+++...-+....| .+.... ++| +++|+||+|+..+... ..+++..+++..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 140 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFP-FVVLGNKIDLEEKRQV---STKKAQQWCQSNG-- 140 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCce-EEEEEECccccccccc---CHHHHHHHHHHcC--
Confidence 8889999999999999874321111111 112221 577 7789999999742111 1123445555544
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++|+++| .|+.++++.+.+.+
T Consensus 141 --~~~~~~~Sa~~~----------~gv~~l~~~i~~~~ 166 (172)
T cd01862 141 --NIPYFETSAKEA----------INVEQAFETIARKA 166 (172)
T ss_pred --CceEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 268999999998 89999999887643
No 120
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=1.6e-17 Score=146.62 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..|+|||||+++|.+....... ...-|.+..............+.+|||||+++|....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAF--------------VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------CCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 58999999999999999999843111000 0000222222222222223568999999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...++.+|++++|+|.++... .+..+.+..+... +.| +++|.||+|+.+..... .++..++.+.++ .
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~ 138 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDERVVS---SERGRQLADQLG-----F 138 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccCcccccC---HHHHHHHHHHcC-----C
Confidence 888999999999999976322 2222333333332 455 88999999997532211 123334444443 4
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+++++||+++ .|+.+|++.+.+.++
T Consensus 139 ~~~~~Sa~~~----------~gv~~l~~~l~~~~~ 163 (165)
T cd01865 139 EFFEASAKEN----------INVKQVFERLVDIIC 163 (165)
T ss_pred EEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 7999999999 899999999987543
No 121
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.75 E-value=5.3e-17 Score=142.50 Aligned_cols=157 Identities=25% Similarity=0.263 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD---- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~---- 140 (451)
..+|+++|.+|+|||||+++|++.. .... . .....+.......+...+..+.+|||||+.+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~------~~~~---~------~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK------ISIV---S------PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc------eEec---c------CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 4689999999999999999998431 1100 0 0011222222222333456799999999643
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
+.......+..+|++++|+|+++.........+..+...+.| +++++||+|+....+..... ...+....
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~-- 141 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTP-VILVLNKIDLVKDKEDLLPL---LEKLKELG-- 141 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCC-EEEEEEchhccccHHHHHHH---HHHHHhcc--
Confidence 333445567889999999999987666666666777777788 67899999998533322222 22222222
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
...+++++|++++ .+++++++.|.+.
T Consensus 142 --~~~~~~~~s~~~~----------~~~~~l~~~l~~~ 167 (168)
T cd04163 142 --PFAEIFPISALKG----------ENVDELLEEIVKY 167 (168)
T ss_pred --CCCceEEEEeccC----------CChHHHHHHHHhh
Confidence 2368999999998 8999999998764
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.75 E-value=1.2e-17 Score=146.36 Aligned_cols=152 Identities=20% Similarity=0.157 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|+.++|||||+++|...... +. . .|+......++..+..+.+|||||+.+|.....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~------------~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV------------TT---I----PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc------------Cc---C----CccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 5899999999999999999632100 00 0 011111122344567899999999999988888
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHH-HHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHIL-LARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~-~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
..+..+|++++|+|+++... ....+.+. .+.. .+.| +++|+||+|+.+... .+ ++.+.+....+.....
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAV-LLVFANKQDMPGALS-EA----EISEKLGLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCCC-HH----HHHHHhCccccCCCcE
Confidence 88899999999999987321 11223332 2221 3677 779999999975321 11 1222221111112345
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+++++||+++ .|+++++++|.+
T Consensus 136 ~~~~~Sa~~~----------~gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKG----------EGLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCC----------CCHHHHHHHHhc
Confidence 7999999999 999999998854
No 123
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=178.23 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=116.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH-----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA----- 139 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~----- 139 (451)
.++|+++|++|+|||||+|+|++... .......|+|.+.....+...+..+.||||||+.
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~---------------~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~ 514 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEER---------------AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHK 514 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc---------------cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCccc
Confidence 47999999999999999999985410 0111234667666555566778889999999953
Q ss_pred ----HHHHH--HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 140 ----DYVKN--MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 140 ----~~~~~--~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
+|... ...++..+|++++|+|++++...++...+..+...++| +|+|+||+|+.+.+. .+.+++++...+..
T Consensus 515 ~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~-~~~~~~~~~~~l~~ 592 (712)
T PRK09518 515 LTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFR-RQRLERLWKTEFDR 592 (712)
T ss_pred chhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhH-HHHHHHHHHHhccC
Confidence 33332 23456789999999999999999998888888888998 779999999986332 23333333332222
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
. ...|++++||++| .|+.+|++.+.+..+
T Consensus 593 ~----~~~~ii~iSAktg----------~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 593 V----TWARRVNLSAKTG----------WHTNRLAPAMQEALE 621 (712)
T ss_pred C----CCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 2 2368899999999 778888887766554
No 124
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.75 E-value=1.9e-17 Score=151.21 Aligned_cols=157 Identities=17% Similarity=0.114 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEee-eCCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYE-TAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~-~~~~~i~iiDtPG~~~~~ 142 (451)
++|+++|.+|+|||||+++|.+...... ....+..+. ..+.+. .....+.+|||||+++|.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----------------~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----------------YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----------------CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh
Confidence 4899999999999999999985311100 011122222 222333 234568999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHH-------HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLAR-------QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~-------~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
......+..+|++++|+|.++...-+... .+..+. ..++| +++|.||+|+.+.... ..+++.++++..
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~---~~~~~~~~~~~~ 140 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDLKKRLAK---DGEQMDQFCKEN 140 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCccccccc---CHHHHHHHHHHc
Confidence 88888889999999999998743222211 112221 13567 7899999999741111 123455666665
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++ .+++++||++| .|++++++.|.+.+.
T Consensus 141 ~~----~~~~e~Sak~~----------~~v~e~f~~l~~~l~ 168 (201)
T cd04107 141 GF----IGWFETSAKEG----------INIEEAMRFLVKNIL 168 (201)
T ss_pred CC----ceEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 53 57999999998 888888888876553
No 125
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.75 E-value=3.6e-17 Score=143.49 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~ 143 (451)
.+|+++|++++|||||+++|++.... .+...+.+.+.....+..++ ..+.+|||||+.+|..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD----------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC----------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 38999999999999999999854111 11222344443333333333 4689999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHH-HHcC--CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLA-RQVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~-~~~~--ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|+++....+. ...+... ...+ +| +++++||+|+.+.... ..++...+.+..
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~~~~---~~~~~~~~~~~~----- 135 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDLSDKRQV---STEEGEKKAKEL----- 135 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhccccCcc---CHHHHHHHHHHh-----
Confidence 88888999999999999987433222 2233322 2333 67 8899999999542221 112333344443
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++++||+++ .|++++++.|.+.
T Consensus 136 ~~~~~~~Sa~~~----------~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFIETSAKAG----------HNVKELFRKIASA 160 (161)
T ss_pred CCEEEEEeCCCC----------CCHHHHHHHHHHh
Confidence 267999999998 8999999998764
No 126
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.6e-17 Score=167.05 Aligned_cols=153 Identities=25% Similarity=0.278 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----H
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----Y 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----~ 141 (451)
.+|+++|++|+|||||+|+|++. ..+.. ....|+|.+.......+.+..+.+|||||+.+ +
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~------~~~~v---------~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGK------RDAIV---------ADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC------Cceee---------CCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 48999999999999999999843 11111 11236666665555666778899999999887 3
Q ss_pred ----HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 ----VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ----~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......++..+|++++|+|+.++......+....++..+.| +++|+||+|+.+.++ ...++ ..+++
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~p-iilv~NK~D~~~~~~-------~~~~~-~~lg~- 136 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKP-VILVVNKVDGPDEEA-------DAYEF-YSLGL- 136 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCc-EEEEEECccCccchh-------hHHHH-HhcCC-
Confidence 33345567889999999999998888878888888888988 779999999764221 12222 23343
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..++++||.+| .|+.++++.+....+
T Consensus 137 ---~~~~~iSa~~g----------~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 137 ---GEPYPISAEHG----------RGIGDLLDAILEELP 162 (435)
T ss_pred ---CCCEEEEeeCC----------CCHHHHHHHHHhhCC
Confidence 24789999998 899999999987544
No 127
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.75 E-value=1.3e-17 Score=130.27 Aligned_cols=87 Identities=24% Similarity=0.414 Sum_probs=80.4
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCC
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
|+|+|+++|++++.|+|++|+|++|.+++||++.++|...+.+..++|++|+.+++++++|.|||++++.|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 67999999999999999999999999999999999996433346899999999999999999999999999999999999
Q ss_pred CCeEEec
Q 013007 346 RGQVIAK 352 (451)
Q Consensus 346 ~G~vl~~ 352 (451)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 128
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=2.3e-17 Score=146.10 Aligned_cols=158 Identities=16% Similarity=0.116 Sum_probs=104.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
..+|+++|.+|+|||||+++|++....... ....|.+.......+......+.+|||||+++|...
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 69 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC--------------CCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 479999999999999999999843111000 011133333333333333357899999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
....+..+|++++|+|+++...-+. ..++..+.. .++| +++|.||+|+.+.... ..++.+.+....+
T Consensus 70 ~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~---~~~~~~~~~~~~~----- 140 (168)
T cd01866 70 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV---SYEEGEAFAKEHG----- 140 (168)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHcC-----
Confidence 8888899999999999986332222 222233333 2567 7899999999742211 1123444555443
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .|+.++++.+.+.+
T Consensus 141 ~~~~e~Sa~~~----------~~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIFMETSAKTA----------SNVEEAFINTAKEI 165 (168)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88999998887653
No 129
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.74 E-value=2.1e-17 Score=145.36 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~ 143 (451)
+||+++|.+|+|||||+++|++.... ....+.++.+.....+...+ ..+.+||+||+.+|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS----------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 48999999999999999999844211 11111222222222333333 5788999999999998
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|+++....+....| ..+.. .++| +++++||+|+....+.. .+...++.+..+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQVS---REEAEAFAEEHG---- 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcccccCCC---HHHHHHHHHHcC----
Confidence 888889999999999999874433322222 22222 3567 78999999987522111 123334455443
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++|+.++ .|+.++++.|.+.+.
T Consensus 137 -~~~~e~Sa~~~----------~~i~~l~~~i~~~~~ 162 (164)
T smart00175 137 -LPFFETSAKTN----------TNVEEAFEELAREIL 162 (164)
T ss_pred -CeEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 46999999998 899999999987653
No 130
>PRK04213 GTP-binding protein; Provisional
Probab=99.74 E-value=7.9e-17 Score=147.04 Aligned_cols=158 Identities=21% Similarity=0.306 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh-----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----- 138 (451)
...+|+++|.+|+|||||+++|.+... ..+..+|+|.......+ . .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~----------------~~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV----------------RVGKRPGVTRKPNHYDW--G--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCceeeCceEEee--c--ceEEEeCCccccccc
Confidence 356999999999999999999984311 11123356655443322 2 5899999993
Q ss_pred ------HHHHHHHHH----hcccCCEEEEEEeCCCCC-----------CccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 139 ------ADYVKNMIT----GAAQMDGGILVVSAPDGP-----------MPQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 139 ------~~~~~~~~~----~~~~~d~~ilVvda~~g~-----------~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
+.|...+.. ++..+|++++|+|+.... ..++.+++..+...++| +++|+||+|+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC-eEEEEECccccCcH
Confidence 445443322 344578999999996521 22345667777777899 67899999997533
Q ss_pred HHHHHHHHHHHHHHHhcCCC----CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 198 ELLELVEMELRELLSFYKFP----GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~~----~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
+ +...++.+.++.. ....+++++||++| |++++++.|.+.++...
T Consensus 147 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-----------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 147 D------EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-----------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred H------HHHHHHHHHhcCCccccccCCcEEEEecccC-----------CHHHHHHHHHHhhcCcc
Confidence 1 1222233333321 11247899999875 58899999988776433
No 131
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.74 E-value=2.8e-17 Score=145.38 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=103.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|.+|+|||||++++.+........ ..-+.+.....+.+......+.+|||||+++|...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--------------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--------------STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc--------------cCccceEEEEEEEECCEEEEEEEEeCCchHHHHHH
Confidence 4799999999999999999998542111100 00122222222233323356899999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
....+..+|++++|+|+++...- +....+..+.. .+.| +++|.||+|+.+.... ..++..++.+.. .
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 139 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKRVV---SKEEGEALADEY-----G 139 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC---CHHHHHHHHHHc-----C
Confidence 77888899999999999874332 12222222322 3567 7789999999753211 112344455543 2
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.|++++||+++ .|+.++++.+.+.+
T Consensus 140 ~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 164 (167)
T cd01867 140 IKFLETSAKAN----------INVEEAFFTLAKDI 164 (167)
T ss_pred CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88999998887643
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.74 E-value=1.5e-17 Score=144.41 Aligned_cols=150 Identities=24% Similarity=0.236 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~ 143 (451)
+||+++|++|+|||||+++|.+.. .+.+..++++.+.....+..++ ..+.+|||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK----------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC----------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 699999999999999999998431 2222233555555444445555 6789999999998855
Q ss_pred HHHHhcccCCEEEEEEeC-------CCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 144 NMITGAAQMDGGILVVSA-------PDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda-------~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
........++.++.++|. .++...........+.. +.| +++++||+|+.... +..+....+...+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~ 138 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLRDAK-----LKTHVAFLFAKLNG 138 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCCcch-----hhHHHHHHHhhccC
Confidence 444444445555555444 33332333333333332 778 77999999997633 22334444554433
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
.+++++||.++ .|+.+++++|.
T Consensus 139 ----~~~~~~sa~~~----------~gv~~~~~~l~ 160 (161)
T TIGR00231 139 ----EPIIPLSAETG----------KNIDSAFKIVE 160 (161)
T ss_pred ----CceEEeecCCC----------CCHHHHHHHhh
Confidence 57999999998 88999988764
No 133
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=3.3e-17 Score=144.48 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE--eeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA--TAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~--~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
++|+++|++++|||||+++|.+..... +....++.+ .....+......+++|||||+++|..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS----------------KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE 64 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH
Confidence 489999999999999999998542111 111112222 22233333346788999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH--------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~--------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
.....+..+|++|+|+|.++...-+. ...+..+.. .+.| +++|.||+|+.+..... .++...+.+..
T Consensus 65 ~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~ 140 (168)
T cd04119 65 VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLTKHRAVS---EDEGRLWAESK 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcccccccC---HHHHHHHHHHc
Confidence 87778889999999999987432221 222222222 2355 88999999997421110 12233344443
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+ .+++++||+++ .|+.++++.|.+.
T Consensus 141 ~-----~~~~~~Sa~~~----------~gi~~l~~~l~~~ 165 (168)
T cd04119 141 G-----FKYFETSACTG----------EGVNEMFQTLFSS 165 (168)
T ss_pred C-----CeEEEEECCCC----------CCHHHHHHHHHHH
Confidence 2 57999999998 8999999998764
No 134
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=1.4e-16 Score=144.71 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=109.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH---- 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~---- 138 (451)
...++|+++|++|+|||||+++|++... . .......|.|.......+ +..+.||||||+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~-----~---------~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKN-----L---------ARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAK 84 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCC-----c---------ccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcC
Confidence 3457999999999999999999985310 0 011112245554443322 367999999995
Q ss_pred ------HHHHHHHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 139 ------ADYVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 139 ------~~~~~~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
++|.......+ ..++++++|+|+..+......+.+..+...++| +++++||+|+.+..+ .+.+.+++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~-~~~~~~~i~~ 162 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGE-RKKQLKKVRK 162 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHH-HHHHHHHHHH
Confidence 34433333333 345788899999887766666666777778888 678999999986433 2333344555
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+... ..+++++||+++ .|+.++++.|.+.+.
T Consensus 163 ~l~~~-----~~~~~~~Sa~~~----------~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 163 ALKFG-----DDEVILFSSLKK----------QGIDELRAAIAKWLA 194 (196)
T ss_pred HHHhc-----CCceEEEEcCCC----------CCHHHHHHHHHHHhc
Confidence 55432 368999999998 899999999987664
No 135
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.74 E-value=2.4e-17 Score=146.00 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=100.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+.++|+++|+.++|||||+++|...... .. ...-|.++ ..+......+.+|||||+++|..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~------------~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~ 68 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV------------TT---IPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRP 68 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc------------cc---cCCcccce----EEEEECCEEEEEEECCCCHHHHH
Confidence 3579999999999999999999732100 00 00012222 12334567899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCC-CccHHHHHH-HHH---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHIL-LAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~-~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|+++.. .....+.+. .+. ..++| +++|.||+|+.+... . +++.+.++......
T Consensus 69 ~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~i~~~~~~~~~~~ 142 (168)
T cd04149 69 LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDAL-LLVFANKQDLPDAMK-P----HEIQEKLGLTRIRD 142 (168)
T ss_pred HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCCccCCC-H----HHHHHHcCCCccCC
Confidence 7778889999999999998742 222223332 222 13567 889999999864211 1 12333332111111
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
...+++++||++| .|+.+++++|.+
T Consensus 143 ~~~~~~~~SAk~g----------~gv~~~~~~l~~ 167 (168)
T cd04149 143 RNWYVQPSCATSG----------DGLYEGLTWLSS 167 (168)
T ss_pred CcEEEEEeeCCCC----------CChHHHHHHHhc
Confidence 2357899999999 899999998853
No 136
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=2.4e-17 Score=144.45 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||+++|.+....... +... +... .....+......+.+|||||+++|....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~---------~~t~-----~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY---------DPTI-----EDSY-RKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc---------CCcc-----hheE-EEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 58999999999999999999853111000 0000 0011 1112222223457899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+..+|++++|+|.++....+. ...+..+. ..++| +++|.||+|+.+.... .++..++.+.++
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~----~~~~~~~~~~~~----- 136 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDLAARTVS----SRQGQDLAKSYG----- 136 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccceec----HHHHHHHHHHhC-----
Confidence 888999999999999886322111 11222222 23667 7789999999753221 123344444433
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++||++| .|++++++.|.+.
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~ 160 (162)
T cd04138 137 IPYIETSAKTR----------QGVEEAFYTLVRE 160 (162)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHH
Confidence 57999999999 8999999998754
No 137
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=3.3e-17 Score=144.71 Aligned_cols=156 Identities=18% Similarity=0.150 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE--eeEEEeeeCCeeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA--TAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~--~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
..+|+++|..|+|||||+++|.+.... .+.....+.+ .....+......+.+|||||+++|.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT----------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH
Confidence 469999999999999999999743110 0111122222 2222232223568999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......++.+|++++|+|+++... ....+.+..+.. .+.| ++++.||+|+....... .++...+.+..
T Consensus 66 ~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 137 (166)
T cd01869 66 TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLTDKRVVD---YSEAQEFADEL---- 137 (166)
T ss_pred HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCc-EEEEEEChhcccccCCC---HHHHHHHHHHc----
Confidence 888888889999999999987321 222233333333 2467 77899999986532211 12334444443
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+|++++||++| .|+.++++.|.+.+
T Consensus 138 -~~~~~~~Sa~~~----------~~v~~~~~~i~~~~ 163 (166)
T cd01869 138 -GIPFLETSAKNA----------TNVEQAFMTMAREI 163 (166)
T ss_pred -CCeEEEEECCCC----------cCHHHHHHHHHHHH
Confidence 358999999998 89999999887643
No 138
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.74 E-value=5.6e-17 Score=143.81 Aligned_cols=156 Identities=15% Similarity=0.059 Sum_probs=103.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++|+++|.+++|||||++++...... .+....++.+. ..+.+......+.||||||+++|
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 67 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD----------------TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF 67 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC----------------cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH
Confidence 4589999999999999999999743111 11111122222 22223333456789999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHH-H------HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLA-R------QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~-~------~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
.......++.+|++++|+|.++....+.. +....+ . ..++| +++|.||+|+.+.... .+++.++++.
T Consensus 68 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~----~~~~~~~~~~ 142 (170)
T cd04116 68 RSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFP-FVVLGNKNDIPERQVS----TEEAQAWCRE 142 (170)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCc-EEEEEECccccccccC----HHHHHHHHHH
Confidence 88888888999999999998874322221 111111 1 13467 7899999998632111 2345566666
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++. .+++++||+++ .++.++++.+.+.
T Consensus 143 ~~~----~~~~e~Sa~~~----------~~v~~~~~~~~~~ 169 (170)
T cd04116 143 NGD----YPYFETSAKDA----------TNVAAAFEEAVRR 169 (170)
T ss_pred CCC----CeEEEEECCCC----------CCHHHHHHHHHhh
Confidence 543 57999999998 8899999888653
No 139
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.74 E-value=2.8e-17 Score=127.29 Aligned_cols=83 Identities=35% Similarity=0.599 Sum_probs=78.3
Q ss_pred CeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCC
Q 013007 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDV 344 (451)
Q Consensus 265 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i 344 (451)
||+|+|+++|+++ .|++++|+|++|++++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~----~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v 75 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK----ESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDI 75 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC----cEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHC
Confidence 7999999999999 99999999999999999999999954 469999999999999999999999999999888899
Q ss_pred CCCeEEec
Q 013007 345 QRGQVIAK 352 (451)
Q Consensus 345 ~~G~vl~~ 352 (451)
++||+|++
T Consensus 76 ~~G~vl~~ 83 (83)
T cd03698 76 SPGDVLCS 83 (83)
T ss_pred CCCCEEeC
Confidence 99999984
No 140
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.74 E-value=4.5e-17 Score=141.72 Aligned_cols=154 Identities=16% Similarity=0.226 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|.+++|||||+++|.+....... ....+.+..............+.+||+||+..|....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY--------------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc--------------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHH
Confidence 47999999999999999999854221110 0111222222222332234678999999999999988
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...+..+|++++|+|+++... ......+..+... +.| +++++||+|+..+... ..+++.++.+.. ..
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~~ 137 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQV---STEEAQQFAKEN-----GL 137 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccccccccc---cHHHHHHHHHHc-----CC
Confidence 888999999999999987322 2223333344443 367 7899999999632221 123444555542 36
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
+++.+||.++ .++.++++.|.
T Consensus 138 ~~~~~sa~~~----------~~i~~~~~~i~ 158 (159)
T cd00154 138 LFFETSAKTG----------ENVEELFQSLA 158 (159)
T ss_pred eEEEEecCCC----------CCHHHHHHHHh
Confidence 8999999998 89999998874
No 141
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.73 E-value=2.4e-17 Score=144.28 Aligned_cols=152 Identities=22% Similarity=0.168 Sum_probs=101.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|+.|+|||||++++++.... +. ..|+......+......+.+|||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-----------------~~--~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-----------------TT--IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-----------------CC--CCCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 5899999999999999999854210 00 1111112222444567899999999999877777
Q ss_pred HhcccCCEEEEEEeCCCCC-CccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGP-MPQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
..+..+|++++|+|+++.. .......+.... ..+.| +++++||+|+..... .+++ .+.++.........
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~~~----~~~~~~~~~~~~~~ 135 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVP-LLIFANKQDLPGALS-VSEL----IEKLGLEKILGRRW 135 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCCccccC-HHHH----HHhhChhhccCCcE
Confidence 7788999999999998742 222333333222 23677 778999999976321 1222 22222211122457
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+++++||++| .|++++++.|..
T Consensus 136 ~~~~~Sa~~~----------~gv~~~~~~l~~ 157 (158)
T cd00878 136 HIQPCSAVTG----------DGLDEGLDWLLQ 157 (158)
T ss_pred EEEEeeCCCC----------CCHHHHHHHHhh
Confidence 8999999998 899999998864
No 142
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=2e-17 Score=145.69 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|++|+|||||+++|.+....... +... . +.......+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~---------~~t~--~----~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDY---------DPTI--E----DSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccc---------CCch--h----hhEEEEEEECCEEEEEEEEECCCcccchHHH
Confidence 38999999999999999999854211100 0000 0 0001112222233567899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+..+|++++|+|+++...-+. ......+. ..++| +++|.||+|+.+..... .++...+.+.. .
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 136 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDLESERVVS---TEEGKELARQW-----G 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceEc---HHHHHHHHHHc-----C
Confidence 888899999999999987322111 11112221 12567 77899999997532111 12333444443 2
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|+.++++.|.+.+.
T Consensus 137 ~~~~~~Sa~~~----------~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 CPFLETSAKER----------VNVDEAFYDLVREIR 162 (164)
T ss_pred CEEEEeecCCC----------CCHHHHHHHHHHHHh
Confidence 68999999998 899999999987543
No 143
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=3.2e-17 Score=148.44 Aligned_cols=159 Identities=16% Similarity=0.155 Sum_probs=103.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..|+|||||+++|.......+... ...+.+.......+......++||||||+.+|....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFI-------------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcC-------------CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence 4799999999999999999974321111000 000111111122232233578899999999998877
Q ss_pred HHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...+..+|++++|+|+++.... .....+..+... ++| +++|+||+|+....... .++...+.+.++ .
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~~~~---~~~~~~l~~~~~-----~ 138 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMSGERVVK---REDGERLAKEYG-----V 138 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccchhccccC---HHHHHHHHHHcC-----C
Confidence 7888899999999999874321 122233333332 567 78999999996422111 123344444433 5
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
|++++||++| .|+.++++.|.+.+.
T Consensus 139 ~~~e~Sa~~~----------~~v~~l~~~l~~~~~ 163 (191)
T cd04112 139 PFMETSAKTG----------LNVELAFTAVAKELK 163 (191)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 8999999999 899999999987765
No 144
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.73 E-value=3e-17 Score=141.08 Aligned_cols=136 Identities=29% Similarity=0.318 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh----HHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH----ADYV 142 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~----~~~~ 142 (451)
+|+++|++|+|||||+++|.+... ....|+. ..+ .. .+|||||+ ..+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--------------------~~~~t~~---~~~--~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--------------------LYKKTQA---VEY--ND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--------------------cccccee---EEE--cC---eeecCchhhhhhHHHH
Confidence 799999999999999999984310 0011211 111 11 68999997 3455
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
+.+...++.+|++++|+|++++...+..+.+.. .+.| +++|+||+|+.+..... ++..++++..+. .+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p-~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~----~~ 121 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKP-VIGLVTKIDLAEADVDI----ERAKELLETAGA----EP 121 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCC-eEEEEEeeccCCcccCH----HHHHHHHHHcCC----Cc
Confidence 555566889999999999998776555433332 3446 77899999987522211 234445555433 47
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
++++||+++ .|+++++++|.
T Consensus 122 ~~~~Sa~~~----------~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IFEISSVDE----------QGLEALVDYLN 141 (142)
T ss_pred EEEEecCCC----------CCHHHHHHHHh
Confidence 999999998 89999998874
No 145
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-16 Score=146.95 Aligned_cols=172 Identities=20% Similarity=0.196 Sum_probs=112.4
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC--
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG-- 137 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG-- 137 (451)
+.....++|+++|.+|+|||||.|.+.+. .. .+..++-.+|.......+.....++.|+||||
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~------kv---------~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQ------KV---------SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCC------cc---------ccccccccceeeeeeEEEecCceEEEEecCCccc
Confidence 34556799999999999999999999843 22 22233334555555555777889999999999
Q ss_pred ----hHH------HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH-cCCCeEEEEEeeccCCChHHHHHHHHHH
Q 013007 138 ----HAD------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEME 206 (451)
Q Consensus 138 ----~~~------~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~~~~~ 206 (451)
|.. +..+...++..||.+++|+|+++.-....-..+..+.. ..+|.+ +|+||+|.......+-.+++.
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~-lvmnkid~~k~k~~Ll~l~~~ 210 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSI-LVMNKIDKLKQKRLLLNLKDL 210 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCce-eeccchhcchhhhHHhhhHHh
Confidence 111 34466677888999999999996333333334444433 367855 899999998654333222211
Q ss_pred H---------HHHHHhcCCCC----------C--CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 207 L---------RELLSFYKFPG----------D--EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 207 ~---------~~~l~~~~~~~----------~--~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+ .+.-+++..-+ + .-.+|++||++| +|+++|-++|....|+
T Consensus 211 Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G----------~GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 211 LTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG----------EGIKDLKQYLMSQAPP 272 (379)
T ss_pred ccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc----------cCHHHHHHHHHhcCCC
Confidence 1 01111111100 0 123899999999 9999999999887763
No 146
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=139.99 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=114.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG------ 137 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG------ 137 (451)
....|+++|.+|+|||||+|+|++... -......+|.|....++.+. + .+.|+|.||
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~--------------LArtSktPGrTq~iNff~~~--~-~~~lVDlPGYGyAkv 85 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKN--------------LARTSKTPGRTQLINFFEVD--D-ELRLVDLPGYGYAKV 85 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcc--------------eeecCCCCCccceeEEEEec--C-cEEEEeCCCcccccC
Confidence 456999999999999999999995310 11223445888877776554 2 389999999
Q ss_pred ----hHHHHHHHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 138 ----HADYVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 138 ----~~~~~~~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
.+.+...+..++ ....+++++||+.+++...+++.+.++...++| +++++||+|.++..+..+.+. ..
T Consensus 86 ~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~l~----~v 160 (200)
T COG0218 86 PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQLN----KV 160 (200)
T ss_pred CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHHHH----HH
Confidence 233333333443 347889999999999999999999999999999 668999999998655433222 22
Q ss_pred HHhcCCCCCCCC-eeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIP-IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~p-vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.+.+.....+ ++..|+.++ .|+++|.+.|.+.+.
T Consensus 161 ~~~l~~~~~~~~~~~~~ss~~k----------~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AEELKKPPPDDQWVVLFSSLKK----------KGIDELKAKILEWLK 197 (200)
T ss_pred HHHhcCCCCccceEEEEecccc----------cCHHHHHHHHHHHhh
Confidence 333333222222 777787777 889999999887654
No 147
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.73 E-value=4e-17 Score=146.72 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=100.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe-eeCCeeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-ETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-~~~~~~i~iiDtPG~~~~~~ 143 (451)
.++|+++|+.|+|||||++++...... .. ....|.+........ ......+.+|||||+++|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 368999999999999999999742110 00 000122222111111 22356799999999999987
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC-ccHH----HHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC-
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM-PQTK----EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP- 217 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~-~~t~----~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~- 217 (451)
.....+..+|++++|+|+++... .... +.+......++| +++|+||+|+.+... . +++..++......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~~~-~----~~~~~~~~~~~~~~ 141 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVP-VLVLANKQDLPNALS-V----SEVEKLLALHELSA 141 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCccccCC-H----HHHHHHhCccccCC
Confidence 77777889999999999987421 1111 122222335678 779999999864211 1 1222222211111
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
....+++++||+++ .|++++++.|.+.+.
T Consensus 142 ~~~~~~~~~SA~~~----------~gi~~l~~~l~~~l~ 170 (183)
T cd04152 142 STPWHVQPACAIIG----------EGLQEGLEKLYEMIL 170 (183)
T ss_pred CCceEEEEeecccC----------CCHHHHHHHHHHHHH
Confidence 12357899999999 899999998876653
No 148
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.73 E-value=3.9e-17 Score=143.34 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|.+++|||||+++|++..... ..+...+.+.......+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDP--------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc--------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 489999999999999999998431100 011122333333333333334578999999999998877
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHH-HHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...++.+|++++|+|+++....+.. .++..+. ..+.| +++|+||+|+....... ++..++.+.. .
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~~----~~~~~~~~~~-----~ 136 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIV-KMLVGNKIDKENREVTR----EEGLKFARKH-----N 136 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccCH----HHHHHHHHHc-----C
Confidence 7788899999999999864332222 2222222 23566 67899999997422111 2333444443 3
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++++++||++| .|+.++++.+.+.
T Consensus 137 ~~~~~~Sa~~~----------~gi~~~~~~~~~~ 160 (161)
T cd01863 137 MLFIETSAKTR----------DGVQQAFEELVEK 160 (161)
T ss_pred CEEEEEecCCC----------CCHHHHHHHHHHh
Confidence 67999999999 8999999988754
No 149
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.73 E-value=6.7e-17 Score=141.86 Aligned_cols=153 Identities=19% Similarity=0.188 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..++|||||+++|..... . ...+ .-|..+ ..+......+.+|||||+.+|....
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-----~-------~~~p---t~g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~ 61 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-----V-------TTIP---TIGFNV----ETVEYKNISFTVWDVGGQDKIRPLW 61 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-----c-------ccCC---CCCcce----EEEEECCEEEEEEECCCCHhHHHHH
Confidence 3899999999999999999963211 0 0000 002211 1234456789999999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...++.+|++++|+|+++.. ..+..+.+..+.. .+.| ++++.||+|+.+... .+ ++.+.+....+....
T Consensus 62 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~~~ 135 (159)
T cd04150 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLPNAMS-AA----EVTDKLGLHSLRNRN 135 (159)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCccccCCCC
Confidence 88889999999999998632 2222333332221 2456 889999999864211 11 121222111111234
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+.++++||++| .|+++++++|.+
T Consensus 136 ~~~~~~Sak~g----------~gv~~~~~~l~~ 158 (159)
T cd04150 136 WYIQATCATSG----------DGLYEGLDWLSN 158 (159)
T ss_pred EEEEEeeCCCC----------CCHHHHHHHHhc
Confidence 56789999999 999999998853
No 150
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=4.4e-17 Score=143.97 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.++|+++|+.++|||||+++|........ . ...-|.+.......+......+.+|||||+++|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~------------~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMAD------------C--PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC------------C--CcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 36999999999999999999974311000 0 000122222222223323356889999999999988
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
....++.+|++++|+|.++...-+. .+.+..... .+.| +++|.||+|+.+..... .++..++.+.. .
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~ 138 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVT---YEEAKQFADEN-----G 138 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCcC---HHHHHHHHHHc-----C
Confidence 8888999999999999987432222 222232322 2345 78999999997532211 12344455543 3
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++||++| .|+.++++.+...
T Consensus 139 ~~~~e~Sa~~~----------~~i~e~f~~l~~~ 162 (166)
T cd04122 139 LLFLECSAKTG----------ENVEDAFLETAKK 162 (166)
T ss_pred CEEEEEECCCC----------CCHHHHHHHHHHH
Confidence 58999999999 8899988877653
No 151
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.5e-16 Score=135.78 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=123.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
....+++++|..++|||+|+.++.....++.+...+ |+..-...++++....++.+|||+|+++|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI--------------GiDFlskt~~l~d~~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI--------------GIDFLSKTMYLEDRTVRLQLWDTAGQERFR 85 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccccee--------------eeEEEEEEEEEcCcEEEEEEEecccHHHHh
Confidence 344799999999999999999998765555544433 343334444555455678999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCC-CCCccHHHHHHHHHHcC-C--CeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVG-V--PSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~-i--p~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
...-.+++.+.+||+|.|.++ ..+.+|...+.-+...+ - ..+++|.||-||.+..+.. .++-+...++++
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs---~eEg~~kAkel~--- 159 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVS---IEEGERKAKELN--- 159 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhh---HHHHHHHHHHhC---
Confidence 999999999999999999987 45677777776666542 2 3467899999999754432 223345555554
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
.-++.+||+.| +++.+|+..+...+|..
T Consensus 160 --a~f~etsak~g----------~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 160 --AEFIETSAKAG----------ENVKQLFRRIAAALPGM 187 (221)
T ss_pred --cEEEEecccCC----------CCHHHHHHHHHHhccCc
Confidence 45899999999 99999999999888855
No 152
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.73 E-value=5e-17 Score=144.87 Aligned_cols=155 Identities=21% Similarity=0.161 Sum_probs=101.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|+++|+.++|||||+++|+..... . . ..|+......+..++..+.+|||||+.+|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~------------~---~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV------------H---T----SPTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC------------C---c----CCccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 3579999999999999999999743110 0 0 1122222233445578899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC-ccHHHHH-HHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHI-LLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|+++... ....+.+ .++.. .++| +++++||+|+.+... .+ ++.+.+.......
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~~~-~~----~i~~~l~~~~~~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGAMT-PA----EISESLGLTSIRD 148 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCCCC-HH----HHHHHhCcccccC
Confidence 88888899999999999987432 1112222 22222 2467 779999999875211 11 1112221111111
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
..++++++||++| .|+++++++|.+
T Consensus 149 ~~~~~~~~SA~~g----------~gi~e~~~~l~~ 173 (174)
T cd04153 149 HTWHIQGCCALTG----------EGLPEGLDWIAS 173 (174)
T ss_pred CceEEEecccCCC----------CCHHHHHHHHhc
Confidence 3467999999999 899999998853
No 153
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.73 E-value=5.5e-16 Score=143.65 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=124.7
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..+...|+++|++|+|||||++.|.+..... ......|. +. .+...+.+++++||||+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~--------------~~~~~~g~-i~----i~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ--------------NISDIKGP-IT----VVTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccC--------------cccccccc-EE----EEecCCceEEEEeCCchH--
Confidence 4456789999999999999999998542110 00011221 11 122357789999999965
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH-HhcCCCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL-SFYKFPGDE 220 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l-~~~~~~~~~ 220 (451)
..+...+..+|++++|+|+..+...++.+.+..+...++|.+++|+||+|+.++.+..+.+++++++.+ .++ + ..
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~-~--~~ 170 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEV-Y--QG 170 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhh-C--CC
Confidence 566667788999999999999999999999999998999977679999999864444555555665533 332 2 24
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEee
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSI 276 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~ 276 (451)
.+++++||++... +++.....++..|...-+...+..+....|.++.++.+
T Consensus 171 ~ki~~iSa~~~~~-----~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~ 221 (225)
T cd01882 171 AKLFYLSGIVHGR-----YPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDI 221 (225)
T ss_pred CcEEEEeeccCCC-----CCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecc
Confidence 6899999987622 22234456666666544433333444455666666543
No 154
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=9.2e-17 Score=143.79 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee----------eCCeeEEEE
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE----------TAKRHYAHV 133 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~----------~~~~~i~ii 133 (451)
..++|+++|..|+|||||++++........... .-|.........+. .....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--------------TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--------------ccceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 357999999999999999999975321111000 00111111112221 123568899
Q ss_pred ecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 134 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 134 DtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
||||+++|.......++.+|++++|+|+++...-+. ...+..+.. .+.| +++|.||+|+.+..... .++..
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~v~---~~~~~ 144 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLEDQRQVS---EEQAK 144 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccchhcCccC---HHHHH
Confidence 999999998888888999999999999986322121 222222322 2455 78999999997532211 12345
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++.+.++ +|++++||+++ .|++++++.|.+.
T Consensus 145 ~~~~~~~-----~~~~e~Sak~~----------~~v~~l~~~l~~~ 175 (180)
T cd04127 145 ALADKYG-----IPYFETSAATG----------TNVEKAVERLLDL 175 (180)
T ss_pred HHHHHcC-----CeEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 5555543 57999999999 8899999988764
No 155
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=5.6e-17 Score=148.37 Aligned_cols=153 Identities=23% Similarity=0.266 Sum_probs=98.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD 140 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~ 140 (451)
..+.++|+++|++|+|||||+++|++...... ...+.|.+.....+...+ ..+.+|||||+.+
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAE----------------DQLFATLDPTTRRLRLPDGREVLLTDTVGFIR 101 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccC----------------CccceeccceeEEEEecCCceEEEeCCCcccc
Confidence 34568999999999999999999986421100 001223333222333333 3799999999732
Q ss_pred H--------HHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 141 Y--------VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 141 ~--------~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
. ...+...+..+|++++|+|++++.... ...+...+... ++| +++|+||+|+.+.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~~~~~~~-------- 172 (204)
T cd01878 102 DLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLLDDEELE-------- 172 (204)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccCChHHHH--------
Confidence 1 122333456799999999998765433 22333344333 466 78999999998643321
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..... ...+++++||+++ .|+.+++++|...
T Consensus 173 ~~~~~-----~~~~~~~~Sa~~~----------~gi~~l~~~L~~~ 203 (204)
T cd01878 173 ERLEA-----GRPDAVFISAKTG----------EGLDELLEAIEEL 203 (204)
T ss_pred HHhhc-----CCCceEEEEcCCC----------CCHHHHHHHHHhh
Confidence 11211 3468999999998 8999999998764
No 156
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=8.7e-17 Score=142.12 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|+.|+|||||+++|....... ..+. .....++. ..+......+++|||||+.++...+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~------------~~~~-~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE------------NVPR-VLPEITIP---ADVTPERVPTTIVDTSSRPQDRANL 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc------------cCCC-cccceEee---eeecCCeEEEEEEeCCCchhhhHHH
Confidence 389999999999999999998531100 0000 00011111 1122345678999999999888777
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...+..+|++++|+|+++...-+.. + ++..++. .++| +++|+||+|+.+..... ..++++..+.+.+.. ..
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~---~~ 139 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE---IE 139 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhcccccchh-HHHHHHHHHHHHHhc---cc
Confidence 7778899999999999875443332 1 2233332 3567 78999999997633211 122333333333321 13
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++++||+++ .|++++++.+...+
T Consensus 140 ~~~e~Sa~~~----------~~v~~lf~~~~~~~ 163 (166)
T cd01893 140 TCVECSAKTL----------INVSEVFYYAQKAV 163 (166)
T ss_pred EEEEeccccc----------cCHHHHHHHHHHHh
Confidence 7999999998 89999999887643
No 157
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3.7e-16 Score=134.18 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=120.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~ 141 (451)
....+|+++|..++||||+++++.....-. .............|.+|+...+..+...+ ..+.++|||||++|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~------t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVI------TEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccce------eeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH
Confidence 345799999999999999999998542100 00000000111144577777666666655 78999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC-CCeEEEEEeeccCCC--hHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-VPSLVCFLNKVDLVE--DEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~-ip~iivviNK~D~~~--~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
-..+....+.+++++++||++.+.....++.+.++...+ +| ++|++||.|+.+ +++ +++++++...
T Consensus 82 ~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a~ppe-------~i~e~l~~~~--- 150 (187)
T COG2229 82 KFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIP-VVVAINKQDLFDALPPE-------KIREALKLEL--- 150 (187)
T ss_pred HHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCC-EEEEeeccccCCCCCHH-------HHHHHHHhcc---
Confidence 999999999999999999999977776677778888877 77 789999999987 232 3444444321
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+|+|+++|..+ ++..+.++.+...
T Consensus 151 ~~~~vi~~~a~e~----------~~~~~~L~~ll~~ 176 (187)
T COG2229 151 LSVPVIEIDATEG----------EGARDQLDVLLLK 176 (187)
T ss_pred CCCceeeeecccc----------hhHHHHHHHHHhh
Confidence 2589999999877 7777777777655
No 158
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=5.9e-17 Score=142.35 Aligned_cols=155 Identities=18% Similarity=0.141 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||++++........ .+... +- .......+......+.||||||+++|....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK---------YDPTI-----ED-SYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc---------cCCch-----hh-hEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 5899999999999999999984311000 00000 00 001112222223567899999999998877
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...++.+|++++|+|.++... ......+..+.. .++| +++|.||+|+.+..... .++...+.+.++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 137 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVP-MVLVGNKCDLEDERVVS---REEGQALARQWG----- 137 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceec---HHHHHHHHHHcC-----
Confidence 778889999999999986322 122222222322 2577 77899999987532211 122333444432
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.|++++||+++ .|+.++++.+.+.
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~ 161 (163)
T cd04136 138 CPFYETSAKSK----------INVDEVFADLVRQ 161 (163)
T ss_pred CeEEEecCCCC----------CCHHHHHHHHHHh
Confidence 68999999998 8999999998764
No 159
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=6.7e-17 Score=142.49 Aligned_cols=156 Identities=16% Similarity=0.117 Sum_probs=102.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~ 142 (451)
..+|+++|.+++|||||+++|.+.... .+..+.++.+.....+..++ ..+.+|||||+++|.
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN----------------LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 369999999999999999999843111 01111222222222233333 468899999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
......+..+|++++|+|+++....+. .+.+..+.. .++| +++|.||+|+....... .++...+....
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~~~~---~~~~~~~~~~~---- 138 (165)
T cd01868 67 AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLRHLRAVP---TEEAKAFAEKN---- 138 (165)
T ss_pred HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccccccccCC---HHHHHHHHHHc----
Confidence 888888889999999999986322221 222232322 2466 78999999987532211 12333444432
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||++| .|++++++.+.+.+
T Consensus 139 -~~~~~~~Sa~~~----------~~v~~l~~~l~~~i 164 (165)
T cd01868 139 -GLSFIETSALDG----------TNVEEAFKQLLTEI 164 (165)
T ss_pred -CCEEEEEECCCC----------CCHHHHHHHHHHHh
Confidence 367999999999 89999999987643
No 160
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=5.1e-17 Score=173.76 Aligned_cols=154 Identities=24% Similarity=0.328 Sum_probs=112.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH-
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK- 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~- 143 (451)
.++|+++|++|+|||||+|+|++.....| ...|+|++.....+...+.+++++||||+.+|..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg----------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 46899999999999999999985422111 1248888877777888888999999999877642
Q ss_pred -------HH--HHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 144 -------NM--ITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 144 -------~~--~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
+. ... ...+|++++|+|+++.. +....+..+...++| +++++||+|+.+..+. ..+.+++.+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i----~id~~~L~~ 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIP-CIVALNMLDIAEKQNI----RIDIDALSA 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCC-EEEEEEchhhhhccCc----HHHHHHHHH
Confidence 11 112 23689999999998743 233455666778999 6799999998743222 223444445
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.++ +|++++||.++ +|++++.+.+.+..+
T Consensus 140 ~LG-----~pVvpiSA~~g----------~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 140 RLG-----CPVIPLVSTRG----------RGIEALKLAIDRHQA 168 (772)
T ss_pred HhC-----CCEEEEEeecC----------CCHHHHHHHHHHhhh
Confidence 544 58999999998 899999999987643
No 161
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.72 E-value=1.3e-16 Score=145.25 Aligned_cols=155 Identities=17% Similarity=0.109 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVKN 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~~ 144 (451)
.|+++|..|+|||||+.++..... ..+....++.+.....+..++ ..+.||||+|+++|...
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f----------------~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l 65 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTF----------------CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 65 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC----------------CCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHH
Confidence 689999999999999999974311 111111222222222233333 67789999999999988
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+++.+|++|+|+|.++...-+.. ..+..+.. .++| +++|.||+|+.+..+.. .++..++.+.. ..
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v~---~~~~~~~a~~~----~~ 137 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCETDREIS---RQQGEKFAQQI----TG 137 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccccccccC---HHHHHHHHHhc----CC
Confidence 88899999999999999974332222 22233332 2566 78999999997532221 12333444443 12
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|+.+++++|...+
T Consensus 138 ~~~~etSAktg----------~gV~e~F~~l~~~~ 162 (202)
T cd04120 138 MRFCEASAKDN----------FNVDEIFLKLVDDI 162 (202)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 88888888776543
No 162
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=5.5e-17 Score=146.62 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=103.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
....+|+++|+.|+|||||+++|.+.... . ...|.......+...+..+.+|||||+.+|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~------~-------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA------Q-------------HVPTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc------c-------------cCCccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 44679999999999999999999843110 0 0011111222344456789999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC-
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF- 216 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~- 216 (451)
......+..+|++++|+|+++... ....+.+.... ..+.| +++++||+|+..... . +++++++.....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~~~-~----~~~~~~~~~~~~~ 151 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVP-FLILGNKIDLPGAVS-E----EELRQALGLYGTT 151 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCC-EEEEEeCCCCCCCcC-H----HHHHHHhCccccc
Confidence 777778899999999999986321 11222222222 23577 778999999864211 1 223333332111
Q ss_pred ----------CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 ----------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ----------~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.....+++++||+++ +|+.+++++|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~Sa~~~----------~gv~e~~~~l~~~ 189 (190)
T cd00879 152 TGKGVSLKVSGIRPIEVFMCSVVKR----------QGYGEAFRWLSQY 189 (190)
T ss_pred ccccccccccCceeEEEEEeEecCC----------CChHHHHHHHHhh
Confidence 012357899999999 9999999998764
No 163
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=1e-16 Score=143.70 Aligned_cols=158 Identities=19% Similarity=0.146 Sum_probs=102.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..++|+++|..++|||||+++|..... .. . ..|+......++..+..+.+|||||+++|.
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~------------~~---~----~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~ 75 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI------------VT---T----IPTIGFNVETVEYKNISFTVWDVGGQDKIR 75 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC------------cc---c----cCCcceeEEEEEECCEEEEEEECCCCHHHH
Confidence 3457999999999999999999963210 00 0 011111122344567889999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHH-H---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
......+..+|++|+|+|+++... ......+... . ..++| ++++.||+|+.+..+ . +++.+.+....+.
T Consensus 76 ~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~l~l~~~~ 149 (181)
T PLN00223 76 PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDLPNAMN-A----AEITDKLGLHSLR 149 (181)
T ss_pred HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCCCC-H----HHHHHHhCccccC
Confidence 888888899999999999986322 1122222222 1 12566 789999999875321 1 1222222211111
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.....++++||++| +|+.+++++|.+.+
T Consensus 150 ~~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 177 (181)
T PLN00223 150 QRHWYIQSTCATSG----------EGLYEGLDWLSNNI 177 (181)
T ss_pred CCceEEEeccCCCC----------CCHHHHHHHHHHHH
Confidence 12335678999999 99999999997654
No 164
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.72 E-value=5.6e-17 Score=143.69 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..|+|||||+++|++.......... ..........+......+.+|||||+++|....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPT---------------VFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---------------eeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 48999999999999999999854221110000 000011122222334568999999999886666
Q ss_pred HHhcccCCEEEEEEeCCCCCCcc--HHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHH--------HHHHHHHHHHh
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQ--TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLEL--------VEMELRELLSF 213 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~--t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~--------~~~~~~~~l~~ 213 (451)
...+..+|++++|+|+++....+ ..+.+..+... ++| +++|+||+|+.+....... -.++..++...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 66678899999999998732211 12233333322 477 7799999999864432211 12334455555
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
++. .+++++||+++ .|+.++++.+.+
T Consensus 145 ~~~----~~~~~~Sa~~~----------~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGA----IGYMECSALTQ----------EGVKEVFEEAIR 170 (171)
T ss_pred hCC----eEEEEeecCCC----------CCHHHHHHHHhh
Confidence 433 48999999998 899999998864
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=4.5e-17 Score=165.61 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH-
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (451)
..++|+++|++|+|||||+|+|++.. . .......|.|.+.....+...+..+.+|||||+.++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~------~---------a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~ 278 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEE------R---------AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD 278 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCC------C---------cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc
Confidence 34799999999999999999998431 1 1111234677776666666778889999999986542
Q ss_pred -------HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 143 -------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 -------~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
......+..+|++++|+|++++...+..+.+.. ..+.| +++|+||+|+.+..... ..
T Consensus 279 ~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~p-iiiV~NK~DL~~~~~~~-----------~~-- 342 (449)
T PRK05291 279 EVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKP-VIVVLNKADLTGEIDLE-----------EE-- 342 (449)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCC-cEEEEEhhhccccchhh-----------hc--
Confidence 224456778999999999988765554444433 34677 77999999997532210 11
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...+++++||++| .|+++|+++|.+.++
T Consensus 343 ---~~~~~i~iSAktg----------~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 343 ---NGKPVIRISAKTG----------EGIDELREAIKELAF 370 (449)
T ss_pred ---cCCceEEEEeeCC----------CCHHHHHHHHHHHHh
Confidence 2357999999998 899999999988765
No 166
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.72 E-value=7e-17 Score=127.32 Aligned_cols=88 Identities=67% Similarity=1.136 Sum_probs=83.0
Q ss_pred ccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEEeeCC
Q 013007 359 YKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFALREGG 438 (451)
Q Consensus 359 ~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvlr~~~ 438 (451)
++.|+|++.+|+++++++..+|++||++++|+++.++.|++..+++++++++||.+.|+|+|.+|+++++++||+||+++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~lR~~~ 82 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAIREGG 82 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecCCEEEEecCC
Confidence 68899999999987666678999999999999999999999999888899999999999999999999999999999999
Q ss_pred cEEEEEEE
Q 013007 439 RTVGAGVV 446 (451)
Q Consensus 439 ~tig~G~I 446 (451)
+|+|+|+|
T Consensus 83 ~tig~G~V 90 (90)
T cd03707 83 RTVGAGVI 90 (90)
T ss_pred cEEEEEEC
Confidence 99999986
No 167
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.72 E-value=1.3e-16 Score=142.34 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=102.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|+++|..++|||||+++|... .. .+ .. .|+......+......+.+|||||+.+|..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~-----~~-------~~-----~~--~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLG-----ES-------VT-----TI--PTIGFNVETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-----CC-------CC-----cC--CccccceEEEEECCEEEEEEECCCChhhHH
Confidence 3579999999999999999999622 10 00 00 111111122344567899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++|+|+|+++.. .....+.+..+.. .++| +++|.||+|+.+... .+ ++.+.+.......
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~----~i~~~~~~~~~~~ 146 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLPDAMK-AA----EITEKLGLHSIRD 146 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccCCC-HH----HHHHHhCccccCC
Confidence 8888889999999999998632 2233444433321 2466 789999999865211 11 2222221111111
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+.++++||++| .|+.+++++|.+.+
T Consensus 147 ~~~~~~~~Sa~~g----------~gv~e~~~~l~~~~ 173 (175)
T smart00177 147 RNWYIQPTCATSG----------DGLYEGLTWLSNNL 173 (175)
T ss_pred CcEEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 2345778999999 99999999987653
No 168
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.1e-16 Score=141.28 Aligned_cols=155 Identities=17% Similarity=0.114 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|..|+|||||++++++........ + .. +.+. .....+......+.+|||||+++|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-----------~--t~-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYI-----------P--TI-EDTY-RQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcC-----------C--cc-hheE-EEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 589999999999999999998532110000 0 00 0011 1112223334568899999999998777
Q ss_pred HHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHH------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
..++..+|++++|+|.++.... .....+..+.. .++| +++|.||+|+.+..+... ++...+...+
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~---~~~~~~~~~~---- 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKREVSS---NEGAACATEW---- 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccCeecH---HHHHHHHHHh----
Confidence 7778899999999999874432 22333333332 3577 778999999975222111 1222233332
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++++||++| .|+.++++.|.++
T Consensus 139 -~~~~~e~SA~~g----------~~v~~~f~~l~~~ 163 (165)
T cd04140 139 -NCAFMETSAKTN----------HNVQELFQELLNL 163 (165)
T ss_pred -CCcEEEeecCCC----------CCHHHHHHHHHhc
Confidence 357999999999 8999999998753
No 169
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=7.1e-17 Score=143.18 Aligned_cols=155 Identities=19% Similarity=0.144 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|..++|||||+++|.+... .. ...|+......++..+..+.+|||||+.+|.....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~------------~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF------------MQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC------------CC-------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 589999999999999999984310 00 01122222223455678899999999999988887
Q ss_pred HhcccCCEEEEEEeCCCCC-CccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC-CCCC
Q 013007 147 TGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF-PGDE 220 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 220 (451)
..+..+|++++|+|+++.. .....+.+..+.. .+.| +++|.||+|+.+... . +++.++++.... ....
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDAL-LLIFANKQDVAGALS-V----EEMTELLSLHKLCCGRS 135 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccCCC-H----HHHHHHhCCccccCCCc
Confidence 8889999999999998732 1222233322221 2356 889999999864211 1 123333322111 1123
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|+.+++++|.+.++
T Consensus 136 ~~~~~~Sa~~g----------~gv~~~f~~l~~~~~ 161 (169)
T cd04158 136 WYIQGCDARSG----------MGLYEGLDWLSRQLV 161 (169)
T ss_pred EEEEeCcCCCC----------CCHHHHHHHHHHHHh
Confidence 46889999999 899999999987665
No 170
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5.4e-17 Score=139.92 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhc--CceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR--GITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
....+|+++|..++|||||+-++.... ..+-.+. |...-+..+.......++.||||+|+++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~----------------F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER 66 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQ----------------FHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER 66 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCc----------------cccccccccccEEEEEEEEeCCcEEEEEEEEcCCccc
Confidence 346899999999999999999886431 1111111 2222222223333346788999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCCeEEE--EEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSLVC--FLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip~iiv--viNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|-...--+++.|++||+|.|.++-. +.+.+..+..+....-|.+++ |.||+|+.+..+. -.++...+.+..+
T Consensus 67 y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V---~~~ea~~yAe~~g-- 141 (200)
T KOG0092|consen 67 YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREV---EFEEAQAYAESQG-- 141 (200)
T ss_pred ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccc---cHHHHHHHHHhcC--
Confidence 9888888899999999999999733 344455556666554454544 8999999862221 1235566777654
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
.+++++||++| .++.+++..|.+.+|...
T Consensus 142 ---ll~~ETSAKTg----------~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 142 ---LLFFETSAKTG----------ENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ---CEEEEEecccc----------cCHHHHHHHHHHhccCcc
Confidence 47999999999 999999999999988543
No 171
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=2.4e-16 Score=169.32 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=118.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH-----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA----- 139 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~----- 139 (451)
..+|+++|++|+|||||+|+|++. .... .+...|+|.+......++.+..+.+|||||..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~------~~~i---------v~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~ 339 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGR------REAV---------VEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG 339 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC------Ccee---------ecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc
Confidence 468999999999999999999843 1111 12234788777766677778899999999964
Q ss_pred ---HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 140 ---DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 140 ---~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.|...+..++..+|++|+|+|++++......+.+..++..++| +|+|+||+|+..... ...++. .+++
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~p-vIlV~NK~D~~~~~~-------~~~~~~-~lg~ 410 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKP-VVLAVNKIDDQASEY-------DAAEFW-KLGL 410 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCC-EEEEEECcccccchh-------hHHHHH-HcCC
Confidence 3566667778899999999999999888888888888888999 779999999864321 111222 2344
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
. ..+++||++| .|+.+|++.|.+.++.
T Consensus 411 ~----~~~~iSA~~g----------~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 411 G----EPYPISAMHG----------RGVGDLLDEALDSLKV 437 (712)
T ss_pred C----CeEEEECCCC----------CCchHHHHHHHHhccc
Confidence 1 3579999999 8999999999988764
No 172
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.71 E-value=1.2e-16 Score=141.94 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--CeeEEEEecCChHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~~~~~~ 144 (451)
+|+++|..++|||||++++.+.... .+....+..+.....+... ...+.||||||+++|...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD----------------KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCI 65 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhh
Confidence 7999999999999999999843111 0111111122221222222 356899999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHcC---CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG---VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~~---ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
....++.+|++++|+|+++... .....++..+.... .+.+++|.||+|+.+... ....+++...+.+.++
T Consensus 66 ~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~-~~~~~~~~~~~~~~~~----- 139 (170)
T cd04108 66 ASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ-YALMEQDAIKLAAEMQ----- 139 (170)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcccc-ccccHHHHHHHHHHcC-----
Confidence 8888999999999999976322 22223333332222 133789999999865322 1112233444555443
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.|.+.+
T Consensus 140 ~~~~e~Sa~~g----------~~v~~lf~~l~~~~ 164 (170)
T cd04108 140 AEYWSVSALSG----------ENVREFFFRVAALT 164 (170)
T ss_pred CeEEEEECCCC----------CCHHHHHHHHHHHH
Confidence 47899999999 89999998887654
No 173
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.71 E-value=4.9e-17 Score=127.11 Aligned_cols=87 Identities=76% Similarity=1.232 Sum_probs=80.2
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCC
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
|+|+|+++|+++++|++++|+|++|++++||++.++|... +...+|++|+.+++++++|.|||+|+++|++++..++.
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~--~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~ 78 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE--TLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVE 78 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC--CceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcC
Confidence 6899999999999999999999999999999999998532 35789999999999999999999999999999889999
Q ss_pred CCeEEecCC
Q 013007 346 RGQVIAKPG 354 (451)
Q Consensus 346 ~G~vl~~~~ 354 (451)
+|++|++++
T Consensus 79 rG~vl~~~~ 87 (87)
T cd03697 79 RGMVLAKPG 87 (87)
T ss_pred CccEEecCC
Confidence 999999763
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=1.9e-16 Score=157.34 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD---- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~---- 140 (451)
-.|+++|.+|+|||||+|+|++.... .....++|.......+...+ ..+.|+||||..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~----------------vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~ 223 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPK----------------VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE 223 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCccc----------------ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc
Confidence 47999999999999999999854211 11122455555444455444 4699999999543
Q ss_pred ---HHHHHHHhcccCCEEEEEEeCCC----CCCccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 141 ---YVKNMITGAAQMDGGILVVSAPD----GPMPQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 141 ---~~~~~~~~~~~~d~~ilVvda~~----g~~~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
+...+.+.+..+|++++|+|++. ....+....+..+.. .+.| +++|+||+|+.+.++.. +.+.
T Consensus 224 ~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP-~IlVlNKiDl~~~~el~----~~l~ 298 (390)
T PRK12298 224 GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKP-RWLVFNKIDLLDEEEAE----ERAK 298 (390)
T ss_pred hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCC-EEEEEeCCccCChHHHH----HHHH
Confidence 44556677888999999999872 122222333333333 2567 66899999997644332 2333
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
++.+.+++ ..+++++||+++ .++++|++.|.+.++.
T Consensus 299 ~l~~~~~~---~~~Vi~ISA~tg----------~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 299 AIVEALGW---EGPVYLISAASG----------LGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHhCC---CCCEEEEECCCC----------cCHHHHHHHHHHHhhh
Confidence 44444332 247999999998 8999999999888763
No 175
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.71 E-value=8.2e-17 Score=135.41 Aligned_cols=137 Identities=25% Similarity=0.295 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC----hHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~~~ 141 (451)
.+|.++|.+++|||||+++|.+.... ...|... .| .+ .+||||| +..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--------------------~~KTq~i---~~--~~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--------------------YKKTQAI---EY--YD---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--------------------cCcccee---Ee--cc---cEEECChhheeCHHH
Confidence 38999999999999999999853111 1122211 11 11 5699999 6778
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
....+.....||.+++|.|+++... ..--.++..++.| +|-|+||+|+..+++..+ ..+++|+..|+.
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~---~~pP~fa~~f~~p-vIGVITK~Dl~~~~~~i~----~a~~~L~~aG~~---- 121 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRS---VFPPGFASMFNKP-VIGVITKIDLPSDDANIE----RAKKWLKNAGVK---- 121 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCc---cCCchhhcccCCC-EEEEEECccCccchhhHH----HHHHHHHHcCCC----
Confidence 8888888889999999999997432 2222445566778 779999999985333332 455778887872
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
.+|++|+.++ +|+++|.++|.
T Consensus 122 ~if~vS~~~~----------eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIFEVSAVTG----------EGIEELKDYLE 142 (143)
T ss_pred CeEEEECCCC----------cCHHHHHHHHh
Confidence 4699999999 99999999885
No 176
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=1.4e-16 Score=146.67 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=104.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|+.|+|||||+++|++.... ......|.+.....+.+......+.||||||+++|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE---------------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC---------------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 4579999999999999999999854110 0001112222222233333345789999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH-HHHH-HHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHIL-LARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~-~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
....+++.+|++++|+|+++....+.. +.|. .+.. .+.| +++|.||+|+....... .++...+....
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~~~~i~---~~~~~~~~~~~--- 150 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDRESERDVS---REEGMALAKEH--- 150 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccCccC---HHHHHHHHHHc---
Confidence 888889999999999999874322222 1221 1221 2456 67899999997532211 12233344443
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++++||+++ .|++++++.|...+.
T Consensus 151 --~~~~~e~SAk~~----------~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 --GCLFLECSAKTR----------ENVEQCFEELALKIM 177 (211)
T ss_pred --CCEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 257999999998 899999999987654
No 177
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.71 E-value=1.2e-16 Score=142.27 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|++++|||||++++.+......+... ..........+......+.+|||||+.+|....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t---------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT---------------VFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---------------eeeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 48999999999999999999753211000000 000001112222223457899999999987776
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHH--HcCCCeEEEEEeeccCCChHHHHHHH---------HHHHHHHHH
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTK-E-HILLAR--QVGVPSLVCFLNKVDLVEDEELLELV---------EMELRELLS 212 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~~~l~ 212 (451)
...+..+|++++|+|..+...-+.. + .+..+. ..++| ++++.||+|+.+.....+.+ .++...+.+
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 144 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK 144 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 6778889999999999874322221 1 122222 24677 77899999987543222111 123445555
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.++. .+++++||+++ .|++++++.+...
T Consensus 145 ~~~~----~~~~e~Sa~~~----------~gi~~~f~~~~~~ 172 (174)
T cd04135 145 EIGA----HCYVECSALTQ----------KGLKTVFDEAILA 172 (174)
T ss_pred HcCC----CEEEEecCCcC----------CCHHHHHHHHHHH
Confidence 5543 47999999999 8999999988653
No 178
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.71 E-value=1.3e-16 Score=145.50 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=104.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--CeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~~~ 141 (451)
..++|+++|..|+|||||+++|.+.... .+....+..+.....+... ...+.||||||++.|
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS----------------GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC----------------CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhH
Confidence 3579999999999999999999743110 0001112222222223323 346889999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.......+..+|++++|+|+++...-+ ....+..+... ..| +++|+||+|+.+..... .++..++.+..+
T Consensus 69 ~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~~~~---~~~~~~~~~~~~--- 141 (199)
T cd04110 69 RTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVC-KVLVGNKNDDPERKVVE---TEDAYKFAGQMG--- 141 (199)
T ss_pred HHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccccC---HHHHHHHHHHcC---
Confidence 888888889999999999998743222 22233333222 356 77899999987532211 123444554432
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|+.+++++|...+.
T Consensus 142 --~~~~e~Sa~~~----------~gi~~lf~~l~~~~~ 167 (199)
T cd04110 142 --ISLFETSAKEN----------INVEEMFNCITELVL 167 (199)
T ss_pred --CEEEEEECCCC----------cCHHHHHHHHHHHHH
Confidence 57999999999 899999999877553
No 179
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.71 E-value=1.5e-16 Score=156.32 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=99.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCCh----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGH---- 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~---- 138 (451)
...+|+++|++|+|||||+|+|++.. +. .+...+.|.+.....+.. ++..+.||||||.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-------~~---------v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-------VY---------AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-------ee---------eccCCccccCCEEEEEEeCCCceEEEEecCcccccC
Confidence 34899999999999999999998531 10 011124455544444444 4568999999997
Q ss_pred -----HHHHHHHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 139 -----ADYVKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 139 -----~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
+.| +.+...+..+|++++|+|+++....+.. .....+... +.| +++|+||+|+.+.++. . .
T Consensus 252 ~~~lie~f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl~~~~~v----~----~ 321 (351)
T TIGR03156 252 PHELVAAF-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIP-QLLVYNKIDLLDEPRI----E----R 321 (351)
T ss_pred CHHHHHHH-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCC-EEEEEEeecCCChHhH----H----H
Confidence 223 3344567789999999999876543222 222333333 567 7799999999753221 1 1
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
... ...+++++||+++ .|+++|++.|.+.
T Consensus 322 ~~~------~~~~~i~iSAktg----------~GI~eL~~~I~~~ 350 (351)
T TIGR03156 322 LEE------GYPEAVFVSAKTG----------EGLDLLLEAIAER 350 (351)
T ss_pred HHh------CCCCEEEEEccCC----------CCHHHHHHHHHhh
Confidence 111 1246899999999 8999999998764
No 180
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.71 E-value=2.1e-16 Score=137.24 Aligned_cols=154 Identities=25% Similarity=0.263 Sum_probs=104.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHHHH------
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYV------ 142 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~------ 142 (451)
++|++|+|||||+++|++..... .....+.|.......+... ...+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 58999999999999998542111 1122234444443333333 5689999999976653
Q ss_pred -HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 143 -KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 143 -~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
..+...++.+|++++|+|+..................+.| +++|+||+|+..+........ . .... . ......
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~-~-~~~~-~--~~~~~~ 139 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKP-VLLVLNKIDLLPEEEEEELLE-L-RLLI-L--LLLLGL 139 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCe-EEEEEEccccCChhhHHHHHH-H-HHhh-c--ccccCC
Confidence 3444567889999999999987776666556666667888 779999999987543322111 0 0111 1 122468
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
|++++||.++ .++.++++.+.+.
T Consensus 140 ~~~~~sa~~~----------~~v~~l~~~l~~~ 162 (163)
T cd00880 140 PVIAVSALTG----------EGIDELREALIEA 162 (163)
T ss_pred ceEEEeeecc----------CCHHHHHHHHHhh
Confidence 9999999988 8899999988764
No 181
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.71 E-value=1e-16 Score=142.54 Aligned_cols=157 Identities=19% Similarity=0.192 Sum_probs=101.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.....+|+++|+.|+|||||+++|.+.... ......|.++ ..+...+..+.+||+||+.+|
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~---------------~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~ 71 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDIS---------------HITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI 71 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCc---------------ccCCCCCcce----EEEEECCEEEEEEECCCCHHH
Confidence 344689999999999999999999853110 0001112222 223345678999999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHH----HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.......+..+|++++|+|+.+... ......+... ...++| +++++||+|+.+..+ .+ ++.+.+....+
T Consensus 72 ~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-~~----~i~~~l~~~~~ 145 (173)
T cd04155 72 RPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVP-VLVFANKQDLATAAP-AE----EIAEALNLHDL 145 (173)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCCccCCC-HH----HHHHHcCCccc
Confidence 8887788889999999999986221 1222222222 234678 778999999875321 11 11122211111
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.....+++++||++| +|+++++++|.+
T Consensus 146 ~~~~~~~~~~Sa~~~----------~gi~~~~~~l~~ 172 (173)
T cd04155 146 RDRTWHIQACSAKTG----------EGLQEGMNWVCK 172 (173)
T ss_pred CCCeEEEEEeECCCC----------CCHHHHHHHHhc
Confidence 112346889999999 999999999864
No 182
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.71 E-value=2.3e-16 Score=140.66 Aligned_cols=157 Identities=18% Similarity=0.120 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee-EEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA-HVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
++|+++|..|+|||||+.++....... +....+..... ...+......+.||||||+++|...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~----------------~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPS----------------EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC----------------CCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh
Confidence 589999999999999999998431100 00001111111 1122222356889999999999877
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHH---------HHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELVE---------MELRELL 211 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~---------~~~~~~l 211 (451)
....++.+|++++|+|.++...-+.. + ++..+.. .++| +|+|.||+|+.+.++..+.+. ++..++.
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTP-FLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 77788899999999999875432222 2 2223322 2566 789999999876433322221 1233344
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+.++ ..+++++||++| .|+.++++.+..
T Consensus 145 ~~~~----~~~~~e~SA~tg----------~~v~~~f~~~~~ 172 (175)
T cd01874 145 RDLK----AVKYVECSALTQ----------KGLKNVFDEAIL 172 (175)
T ss_pred HHhC----CcEEEEecCCCC----------CCHHHHHHHHHH
Confidence 4432 267999999999 899999988765
No 183
>PTZ00369 Ras-like protein; Provisional
Probab=99.71 E-value=6.5e-17 Score=146.14 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=102.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+..+|+++|+.|+|||||++++.+...... .+.. -+.+. .....++.....+.||||||+++|..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~---------~~~t-----~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 68 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDE---------YDPT-----IEDSY-RKQCVIDEETCLLDILDTAGQEEYSA 68 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcC---------cCCc-----hhhEE-EEEEEECCEEEEEEEEeCCCCccchh
Confidence 357999999999999999999984311000 0000 01111 11122333345688999999999998
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
....++..+|++++|+|+++... ......+..+.. .++| +++|.||+|+.+..... .++..++.+.++
T Consensus 69 l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~~i~---~~~~~~~~~~~~--- 141 (189)
T PTZ00369 69 MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVP-MILVGNKCDLDSERQVS---TGEGQELAKSFG--- 141 (189)
T ss_pred hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECcccccccccC---HHHHHHHHHHhC---
Confidence 88888899999999999987432 122222222222 2567 78999999986422111 112333344432
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.|++++||+++ .|+.+++++|.+.+.
T Consensus 142 --~~~~e~Sak~~----------~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 --IPFLETSAKQR----------VNVDEAFYELVREIR 167 (189)
T ss_pred --CEEEEeeCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999998 889988888876553
No 184
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=2.9e-16 Score=153.14 Aligned_cols=157 Identities=19% Similarity=0.182 Sum_probs=104.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~~--- 140 (451)
.-.|+++|.+|||||||+++|++.....+ ...++|.......+.. +...++++||||..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va----------------~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIA----------------DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGAS 221 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccC----------------CCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCC
Confidence 35899999999999999999985421111 1123455554444444 456799999999632
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHH
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELREL 210 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~ 210 (451)
+....++.+..+|++++|+|+++....+ .......+.. .+.| +++|+||+|+.+..+..+ +..+.+
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL~~~~~~~~---~~~~~~ 297 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDLLDEEEERE---KRAALE 297 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECcccCCchhHHH---HHHHHH
Confidence 4455566677899999999998643222 2222233332 2567 678999999976433221 122223
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.. ..+++++||+++ +++++|+++|.+.++
T Consensus 298 ~~~~-----~~~i~~iSAktg----------~GI~eL~~~L~~~l~ 328 (335)
T PRK12299 298 LAAL-----GGPVFLISAVTG----------EGLDELLRALWELLE 328 (335)
T ss_pred HHhc-----CCCEEEEEcCCC----------CCHHHHHHHHHHHHH
Confidence 3332 257999999999 899999999988765
No 185
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.71 E-value=9.2e-17 Score=142.02 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee--CCeeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET--AKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~--~~~~i~iiDtPG~~~~~~ 143 (451)
.+|+++|..|+|||||+++++...... +....+..+.....+.. ....+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK----------------KYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc
Confidence 489999999999999999997431110 00111112222222222 335688999999999876
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
.....+..+|++|+|+|.++...-+... .+..+... ++| +++|.||+|+.... .. .+..++.+. ..
T Consensus 65 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-~~----~~~~~~~~~-----~~ 133 (166)
T cd00877 65 LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-VK----AKQITFHRK-----KN 133 (166)
T ss_pred ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhccccc-CC----HHHHHHHHH-----cC
Confidence 6666778899999999998754333222 22223222 577 78999999997421 11 111223332 23
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| +|++++++.|.+.+.
T Consensus 134 ~~~~e~Sa~~~----------~~v~~~f~~l~~~~~ 159 (166)
T cd00877 134 LQYYEISAKSN----------YNFEKPFLWLARKLL 159 (166)
T ss_pred CEEEEEeCCCC----------CChHHHHHHHHHHHH
Confidence 67999999999 899999999987653
No 186
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=3.4e-16 Score=138.87 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=101.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCCeeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
..+|+++|++|+|||||+++++.... +.+....+..+.. ...+......+.+|||||+++|.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~----------------~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 65 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRF----------------PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR 65 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC----------------CCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence 46999999999999999999974311 1111112222222 22233333678999999999987
Q ss_pred HH-HHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 143 KN-MITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 ~~-~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.. ....+..+|++++|+|+++....+... .+..+.. .++| +++|.||+|+....... .++..++.+..
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~---~~~~~~~~~~~-- 139 (170)
T cd04115 66 KSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVP-RILVGNKCDLREQIQVP---TDLAQRFADAH-- 139 (170)
T ss_pred HhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCC-EEEEEECccchhhcCCC---HHHHHHHHHHc--
Confidence 53 455677899999999998755433333 3333333 2477 77999999986432211 12233444443
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||+++..+ .++.+++..+.+.+
T Consensus 140 ---~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 ---SMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred ---CCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 368999999984222 67888888776543
No 187
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.71 E-value=1.4e-16 Score=140.40 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||++++........ .+... +.+. .....+......+.+|||||+++|....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~---------~~~t~-----~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK---------YDPTI-----EDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc---------cCCcc-----hheE-EEEEEECCEEEEEEEEECCCcccchhHH
Confidence 5899999999999999999974311000 00000 1111 1112222223567899999999999888
Q ss_pred HHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...++.+|++++|+|.++....+ ....+..+. ..++| +++|.||+|+.+..... .++..++.+.++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 137 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVP-MILVGNKCDLEDERVVG---KEQGQNLARQWG----- 137 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcchhccEEc---HHHHHHHHHHhC-----
Confidence 88899999999999987643211 222222222 23577 78999999997522111 112334444432
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.|++++||+++ .|+.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~~~~~l~~~l 162 (164)
T cd04175 138 CAFLETSAKAK----------INVNEIFYDLVRQI 162 (164)
T ss_pred CEEEEeeCCCC----------CCHHHHHHHHHHHh
Confidence 57999999998 89999999987654
No 188
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.70 E-value=1.3e-16 Score=141.33 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||++++.+..... ..+.. -+.. ......+......+.+|||||+++|....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~---------~~~~t-----~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIE---------SYDPT-----IEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc---------ccCCc-----chhe-EEEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 589999999999999999997431100 00000 0000 01112222233567899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHH----HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLA----RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~----~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+..+|++++|+|.++...-+. ......+ ...++| ++++.||+|+.+.... ..++...+.+.++ .
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~~~---~~~~~~~~~~~~~----~ 138 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVP-MVLVGNKADLEDDRQV---SREDGVSLSQQWG----N 138 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCC-EEEEEEChhccccCcc---CHHHHHHHHHHcC----C
Confidence 888889999999999987422111 1111222 123678 7789999998753221 1122334444443 3
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.|++++||+++ .++.++++.+...+
T Consensus 139 ~~~~~~SA~~~----------~~i~~~f~~i~~~~ 163 (168)
T cd04177 139 VPFYETSARKR----------TNVDEVFIDLVRQI 163 (168)
T ss_pred ceEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 78999999998 88999999887654
No 189
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=1.4e-16 Score=144.33 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|.+++|||||+++|.+.....+. .....|.+.......+......+.+|||||+++|....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGP-------------YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcC-------------cccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 48999999999999999999843111000 00001112212222222223456799999999887776
Q ss_pred HHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHH-HHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELV-EMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 221 (451)
...+..+|++++|+|.++...-+ ....+..+... ++| +++|.||+|+.+.......+ .+++.++...++ .
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-----~ 141 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-----A 141 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCC-EEEEEEcccccccccccCccCHHHHHHHHHHcC-----C
Confidence 66778999999999998642221 22233333333 577 78999999986532111111 123445555432 5
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++++||+++ .|+++|++.|.+.+
T Consensus 142 ~~~~~Sa~~~----------~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTG----------QNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7899999998 88999999887654
No 190
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.70 E-value=2.2e-16 Score=138.34 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|.+|+|||||+++|.+.... .. ....+.+. ....+ .....+.+|||||+.+|...+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~------------~~---~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV------------TT---IPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc------------cc---cCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHH
Confidence 4899999999999999999854110 00 00112221 12222 1346799999999999988888
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHHHH-H---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC-CCC
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP-GDE 220 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 220 (451)
..+..+|++++|+|+++... ......+... . ..+.| +++|+||+|+..... .+ ++...++...+. ...
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~----~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVP-VVLLANKQDLPGALT-AE----EITRRFKLKKYCSDRD 136 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECcccccCcC-HH----HHHHHcCCcccCCCCc
Confidence 88899999999999987431 1122222221 1 14677 789999999864211 11 122221111111 124
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.+++++||++| .|++++++.|.+
T Consensus 137 ~~~~~~Sa~~~----------~gv~~~~~~i~~ 159 (160)
T cd04156 137 WYVQPCSAVTG----------EGLAEAFRKLAS 159 (160)
T ss_pred EEEEecccccC----------CChHHHHHHHhc
Confidence 57999999999 999999998854
No 191
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.70 E-value=4.1e-16 Score=138.98 Aligned_cols=158 Identities=16% Similarity=0.110 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCce-EEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT-IATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
+++|+++|..|+|||||+.++........ ....+. .......++.....+.||||||+++|..
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~----------------~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGE----------------YIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 64 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCc----------------CCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh
Confidence 36899999999999999999874311100 000000 0011112222335688999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHHHHH
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELREL 210 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~~~ 210 (451)
.....+..+|++|+|+|.++...-+.. . ++..+.. .++| +++|.||+|+.+.....+.+ .++..++
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 143 (174)
T cd01871 65 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 143 (174)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHH
Confidence 777788899999999999874332222 1 2232322 2567 78999999996532211111 1233455
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.+.++. .+++++||++| +|++++++.+.+
T Consensus 144 ~~~~~~----~~~~e~Sa~~~----------~~i~~~f~~l~~ 172 (174)
T cd01871 144 AKEIGA----VKYLECSALTQ----------KGLKTVFDEAIR 172 (174)
T ss_pred HHHcCC----cEEEEeccccc----------CCHHHHHHHHHH
Confidence 555432 58999999999 899999998865
No 192
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=3.3e-16 Score=152.64 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHAD--- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~--- 140 (451)
.-.|+++|.+|+|||||+++|++.....+. ...+|.......+...+ ..++|+||||+.+
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~----------------y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS 220 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccC----------------CCCCccCCEEEEEEeCCceEEEEEeCCCcccCCc
Confidence 458999999999999999999854211111 11233333333344445 7899999999642
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCC----ccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHH
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPM----PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMEL 207 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~----~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~ 207 (451)
+.....+.+..+|++++|+|+++... .+.......+.. .+.| +++|+||+|+.+..+ .+. ..
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~~~-~~~---~~ 295 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDEEE-LAE---LL 295 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCChHH-HHH---HH
Confidence 34455566778999999999986411 111122222222 3567 678999999986433 222 22
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++.+.++ .+++++||+++ +++++|+++|.+.+
T Consensus 296 ~~l~~~~~-----~~vi~iSAktg----------~GI~eL~~~I~~~l 328 (329)
T TIGR02729 296 KELKKALG-----KPVFPISALTG----------EGLDELLYALAELL 328 (329)
T ss_pred HHHHHHcC-----CcEEEEEccCC----------cCHHHHHHHHHHHh
Confidence 33333332 57999999998 89999999998754
No 193
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=1.8e-16 Score=138.09 Aligned_cols=152 Identities=19% Similarity=0.192 Sum_probs=99.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHH
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (451)
|+++|+.|+|||||+++|.+.... .+..+....+. ..+......+.+|||||+.+|......
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~----------------~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS----------------EDTIPTVGFNM--RKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC----------------cCccCCCCcce--EEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 799999999999999999854111 00011111111 223344577999999999999988888
Q ss_pred hcccCCEEEEEEeCCCCC-CccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 148 GAAQMDGGILVVSAPDGP-MPQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
.+..+|++++|+|+++.. ..+..+.+..+. ..++| +++|+||+|+.+.... + ++.+.+..-......++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGALSV-D----ELIEQMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCcCH-H----HHHHHhCcccccCCceE
Confidence 899999999999998632 122233333322 24677 7789999998753221 1 11111111011123468
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
++++|++++ .|+.+++++|.+
T Consensus 138 ~~~~Sa~~~----------~gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEK----------TNIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccC----------CChHHHHHHHhh
Confidence 999999999 899999998864
No 194
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.70 E-value=1.7e-16 Score=129.54 Aligned_cols=88 Identities=28% Similarity=0.412 Sum_probs=79.2
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeCCeE
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELISPL 424 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~ 424 (451)
.+++|+|+|+||+++ ..+|.+||+|++|+++.+++|+|..+ ++|+++++||.+.|+|++.+|+
T Consensus 2 ~~~~F~A~i~vl~~~----~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi 77 (108)
T cd03704 2 VVTEFEAQIAILELK----RSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPI 77 (108)
T ss_pred cccEEEEEEEEEeCC----CCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcE
Confidence 468899999999974 25799999999999999999999743 2578999999999999999999
Q ss_pred eeecC------CeEEEeeCCcEEEEEEEEee
Q 013007 425 PLQQG------QRFALREGGRTVGAGVVSKV 449 (451)
Q Consensus 425 ~~~~~------~rfvlr~~~~tig~G~I~~~ 449 (451)
|++.+ +||+||++|+|+|+|.|+++
T Consensus 78 ~~e~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 78 CLEKFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EEEEcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 99988 89999999999999999874
No 195
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=1.5e-16 Score=143.98 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=99.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|..|+|||||+++|........ ..... +... .....+......+.||||||+++|.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~---------~~~t~-----~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET---------YDPTI-----EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc---------CCCch-----HhhE-EEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 589999999999999999974311000 00000 0000 11111222234588999999999998888
Q ss_pred HhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.+++.+|++++|+|.++..... ....+..+.. .++| +++|.||+|+.+..... .++..++.+.++
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~---- 137 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVP-IMIVGNKCDKVYEREVS---TEEGAALARRLG---- 137 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCC-EEEEEEChhccccCccC---HHHHHHHHHHhC----
Confidence 8899999999999998743222 2223333322 3567 77899999996532211 112334444433
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|++++++.+.+.+-
T Consensus 138 -~~~~e~SAk~~----------~~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 -CEFIEASAKTN----------VNVERAFYTLVRALR 163 (190)
T ss_pred -CEEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 57999999999 889998888876543
No 196
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.70 E-value=2e-16 Score=122.14 Aligned_cols=82 Identities=33% Similarity=0.515 Sum_probs=76.4
Q ss_pred CeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCC
Q 013007 265 PFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDV 344 (451)
Q Consensus 265 p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i 344 (451)
||+|+|+++|+.. |++++|+|.+|++++||++.++|.+ ..++|++|+.++.++++|.|||+|+++|++++..++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~----~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v 74 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK----TQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDI 74 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC----cEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHC
Confidence 7999999999864 8999999999999999999999954 479999999999999999999999999999998999
Q ss_pred CCCeEEec
Q 013007 345 QRGQVIAK 352 (451)
Q Consensus 345 ~~G~vl~~ 352 (451)
++||+|++
T Consensus 75 ~~G~vl~~ 82 (82)
T cd04089 75 SPGFVLCS 82 (82)
T ss_pred CCCCEEeC
Confidence 99999984
No 197
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.70 E-value=3.4e-16 Score=144.40 Aligned_cols=157 Identities=15% Similarity=0.079 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee---CCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---AKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~iiDtPG~~~~~ 142 (451)
++|+++|..|+|||||+++|.+.... .+....++.+.....+.. ....+.||||||++.|.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~----------------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~ 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG----------------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH
Confidence 48999999999999999999843110 111112222322222222 23578999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc-----CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~-----~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
......++.+|++|+|+|+++... ....+.+..+... ..+++++|.||+|+.+.... ..++...+.+.++
T Consensus 65 ~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v---~~~~~~~~~~~~~- 140 (215)
T cd04109 65 KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV---KDDKHARFAQANG- 140 (215)
T ss_pred HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc---CHHHHHHHHHHcC-
Confidence 887788899999999999987422 2222223333322 12337889999999742221 1123445555543
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| +|++++++.|...+.
T Consensus 141 ----~~~~~iSAktg----------~gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 ----MESCLVSAKTG----------DRVNLLFQQLAAELL 166 (215)
T ss_pred ----CEEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 47899999999 899999999987653
No 198
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=3.1e-16 Score=141.03 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=101.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+...+|+++|.+|+|||||+++|.+... ..+ ....+.+ ...+...+.++.++||||+.++.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~------~~~---------~~t~~~~----~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRL------AQH---------QPTQHPT----SEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCC------ccc---------CCccccc----eEEEEECCEEEEEEECCCCHHHH
Confidence 3447999999999999999999984310 000 0011122 12233456789999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC-
Q 013007 143 KNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF- 216 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~- 216 (451)
.....++..+|++++|+|+++.. .....+.+..+. ..++| +++|+||+|+..... .+ ++.+.+.....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~-~~----~i~~~l~l~~~~ 149 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVP-FLILGNKIDAPYAAS-ED----ELRYALGLTNTT 149 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCCC-HH----HHHHHcCCCccc
Confidence 88888899999999999998632 122222332222 24677 779999999864211 11 22222211110
Q ss_pred ------CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 ------PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ------~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
......++++||+++ .|+++++++|.+.
T Consensus 150 ~~~~~~~~~~~~i~~~Sa~~~----------~g~~~~~~wl~~~ 183 (184)
T smart00178 150 GSKGKVGVRPLEVFMCSVVRR----------MGYGEGFKWLSQY 183 (184)
T ss_pred ccccccCCceeEEEEeecccC----------CChHHHHHHHHhh
Confidence 012345899999999 8999999999753
No 199
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.70 E-value=2.8e-16 Score=137.70 Aligned_cols=154 Identities=22% Similarity=0.168 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
.||+++|..|+|||||+++|....... ...+.++... ....+......+.+|||||++.|..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE----------------KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH
Confidence 489999999999999999998542110 0011111111 1222222234688999999999887
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|.+++...+.. ..+..+.. .++| +++++||+|+....... .+++.++.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~~~---~~~~~~~~~~~~---- 136 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRVVS---KSEAEEYAKSVG---- 136 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHcC----
Confidence 777778899999999999875432222 22222222 2567 77899999987532211 123344444433
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++|++++ +|++++++++.+.
T Consensus 137 -~~~~~~s~~~~----------~gi~~~~~~l~~~ 160 (162)
T cd04123 137 -AKHFETSAKTG----------KGIEELFLSLAKR 160 (162)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHH
Confidence 56899999998 8999999998764
No 200
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=4.7e-16 Score=140.12 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=105.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++|+++|..++|||||+.++..... ..+....++.+. ..+.+......+.||||||+++|
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~----------------~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 68 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGST----------------ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF 68 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCC----------------CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 458999999999999999999974211 111111122222 22233333367889999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.......++.+|++|||+|.++... ......+..+.. .++| +|+|.||+|+...... -.++.+++.+..+
T Consensus 69 ~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~~~v---~~~~~~~~a~~~~--- 141 (189)
T cd04121 69 CTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVP-KILVGNRLHLAFKRQV---ATEQAQAYAERNG--- 141 (189)
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccchhccCC---CHHHHHHHHHHcC---
Confidence 9888888899999999999987433 222333333332 3566 7899999999642111 1234556665543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.|...+
T Consensus 142 --~~~~e~SAk~g----------~~V~~~F~~l~~~i 166 (189)
T cd04121 142 --MTFFEVSPLCN----------FNITESFTELARIV 166 (189)
T ss_pred --CEEEEecCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 88888888887643
No 201
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.70 E-value=1.8e-16 Score=139.32 Aligned_cols=156 Identities=21% Similarity=0.175 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||+++|+.......... .. +... .....+......+.+|||||+.+|....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~-----------~~---~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEP-----------TK---ADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCC-----------cc---hhhE-EEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 3899999999999999999985421111000 00 0000 0111222234568999999999999988
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...++.+|++++|+|..+... ......+.... ..++| +++|+||+|+.+..... ..+...+.+.++
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~~~~---~~~~~~~~~~~~----- 136 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKRQVS---SEEAANLARQWG----- 136 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEccccccccccC---HHHHHHHHHHhC-----
Confidence 889999999999999876321 11122222222 24678 77999999997521111 112333444433
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.|++++||+++ .|++++++.+.+.+
T Consensus 137 ~~~~~~Sa~~~----------~gi~~l~~~l~~~~ 161 (164)
T cd04139 137 VPYVETSAKTR----------QNVEKAFYDLVREI 161 (164)
T ss_pred CeEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 58999999999 99999999987654
No 202
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=2e-16 Score=144.05 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVKN 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~~ 144 (451)
+|+++|+.|+|||||+++|......... ...+.......+...+ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY-----------------RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC-----------------CCchhhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 5899999999999999999754211000 0011111112233333 56889999999999877
Q ss_pred HHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHH----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLAR----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
...++..+|++++|+|+++...-+ ....+..+. ..++| +|+|+||+|+...+.... .++..+.... . .
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~~v~--~~~~~~~~~~-~---~ 136 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVP-IVVVGNKADSLEEERQVP--AKDALSTVEL-D---W 136 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEEcccccccccccc--HHHHHHHHHh-h---c
Confidence 777888999999999998743222 111112222 24678 779999999975312111 0111112211 1 1
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++++||++| .|+.+++++|.+.+.
T Consensus 137 ~~~~~~~Sa~~g----------~gv~~l~~~l~~~~~ 163 (198)
T cd04147 137 NCGFVETSAKDN----------ENVLEVFKELLRQAN 163 (198)
T ss_pred CCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 367999999999 999999999988665
No 203
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=2.1e-16 Score=139.07 Aligned_cols=156 Identities=21% Similarity=0.185 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|.+|+|||||++++........ .+... + ........+......+.||||||+++|....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~---------~~~t~-----~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK---------YDPTI-----E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC---------CCCch-----h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 5899999999999999999874311100 00000 0 0111122222223457899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
...+..+|++++|+|.++... ....+.+..+.. .++| +++|.||+|+.+..... .++...+.+.++
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~~~~~---~~~~~~~~~~~~----- 137 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDLESEREVS---SAEGRALAEEWG----- 137 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccchhcCccC---HHHHHHHHHHhC-----
Confidence 788889999999999987432 222232222322 3677 77899999986422211 112233334332
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.|++++||+++ .|+.++++.+.+.+
T Consensus 138 ~~~~~~Sa~~~----------~~v~~l~~~l~~~l 162 (163)
T cd04176 138 CPFMETSAKSK----------TMVNELFAEIVRQM 162 (163)
T ss_pred CEEEEecCCCC----------CCHHHHHHHHHHhc
Confidence 57999999998 89999999987643
No 204
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=2.4e-16 Score=140.14 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE---eeEEEeeeCCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA---TAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~---~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.+|+++|..|+|||||+.++....... +. ..|+. .....+......+.||||||.++|.
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~----------------~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD----------------YH--DPTIEDAYKQQARIDNEPALLDILDTAGQAEFT 64 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC----------------Cc--CCcccceEEEEEEECCEEEEEEEEeCCCchhhH
Confidence 689999999999999999987431100 00 01111 0112222223568899999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.....++..+|++++|+|.++...-+... .+..+.. .++| +++|.||+|+.+..... .++..++.+..
T Consensus 65 ~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~~~~v~---~~~~~~~a~~~--- 137 (172)
T cd04141 65 AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIP-LVLVGNKVDLESQRQVT---TEEGRNLAREF--- 137 (172)
T ss_pred HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhhhhcCccC---HHHHHHHHHHh---
Confidence 88888889999999999998755433322 2222222 3577 78999999986432211 12334444443
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..+++++||++| .|++++++.|...+
T Consensus 138 --~~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 163 (172)
T cd04141 138 --NCPFFETSAALR----------HYIDDAFHGLVREI 163 (172)
T ss_pred --CCEEEEEecCCC----------CCHHHHHHHHHHHH
Confidence 358999999998 88999999887644
No 205
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=2.7e-16 Score=139.87 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=99.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceE-EeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI-ATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~-~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
|+++|..|+|||||++++.+..... +....+.. ......+......+.+|||||+++|.....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE----------------DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC----------------CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhch
Confidence 5899999999999999998531110 00000100 011112222234688999999999877777
Q ss_pred HhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHHHHHHHh
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELRELLSF 213 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~~~l~~ 213 (451)
..+..+|++++|+|.++...-+.. ..+..+.. .++| +++|.||+|+.+.....+.+ .++..++.+.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTP-IILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 778899999999999863221111 12222322 2677 78999999997533222111 1234456666
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+. .+++++||+++ .|+.++++.+.+.+
T Consensus 144 ~~~----~~~~e~Sa~~~----------~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGA----VKYLECSALTQ----------EGVREVFEEAIRAA 171 (174)
T ss_pred cCC----cEEEEecCCCC----------CCHHHHHHHHHHHh
Confidence 543 47999999999 89999999887643
No 206
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=3.5e-16 Score=141.39 Aligned_cols=161 Identities=16% Similarity=0.085 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
++|+++|..|+|||||++++.+..... +....+... ......+.....+.||||||+++|...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~----------------~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ----------------VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC----------------ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccc
Confidence 489999999999999999998531110 000001000 111112222356899999999998766
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHHH--HHHHHHH--cCCCeEEEEEeeccCCChHHHHHH---------HHHHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTKE--HILLARQ--VGVPSLVCFLNKVDLVEDEELLEL---------VEMELRELL 211 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~~--~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~---------~~~~~~~~l 211 (451)
....+..+|++++|+|.++...-+..+ .+..+.. .+.| +++|.||+|+.+..+..+. ..++..++.
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 666778899999999988743333221 2333332 2567 8899999999764322111 012233444
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+..+ ..+++++||++| .|++++++.|.+.+..
T Consensus 144 ~~~~----~~~~~e~SAk~~----------~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 144 KRIN----ALRYLECSAKLN----------RGVNEAFTEAARVALN 175 (189)
T ss_pred HHcC----CCEEEEccCCcC----------CCHHHHHHHHHHHHhc
Confidence 4432 267999999999 8999999999876543
No 207
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.69 E-value=4.5e-16 Score=139.66 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..++|||||+.++........+ ...-|.......+........+.+|||+|+++|....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~--------------~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDY--------------IQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhh
Confidence 48999999999999999999743111000 0001122211222222223568999999999998877
Q ss_pred HHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc---CCCeEEEEEeeccCCCh--HHHHHHHHHHHHHHHHhcCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVED--EELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~---~ip~iivviNK~D~~~~--~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
...++.+|++++|+|.++....+ ..+.+..+... ..| + +|.||+|+..+ ++..+.+.++..++.+..+
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i-lVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~---- 140 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I-LVGTKYDLFADLPPEEQEEITKQARKYAKAMK---- 140 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E-EEEEchhccccccchhhhhhHHHHHHHHHHcC----
Confidence 78889999999999998743222 22333333332 334 4 78999999631 1111122334555555543
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||++| .|++++++.+.+.+
T Consensus 141 -~~~~e~SAk~g----------~~v~~lf~~l~~~l 165 (182)
T cd04128 141 -APLIFCSTSHS----------INVQKIFKIVLAKA 165 (182)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999999 89999999887654
No 208
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=2.6e-16 Score=141.81 Aligned_cols=160 Identities=14% Similarity=0.097 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEee-eCCeeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYE-TAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~-~~~~~i~iiDtPG~~~~~~ 143 (451)
++|+++|..|+|||||+++|.+...... ....+..+. ...... .....+.||||||+++|..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----------------~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----------------YVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----------------CCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH
Confidence 4899999999999999999985321100 000011111 111111 1234688999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHHH--cCCCeEEEEEeeccCCChHHHHH-HHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDEELLE-LVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~~--~~ip~iivviNK~D~~~~~~~~~-~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++++|+|.++...-+.. . ++..... .++| +|+|.||+|+.+...... ...++..++...++.
T Consensus 65 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-- 141 (187)
T cd04132 65 LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA-- 141 (187)
T ss_pred HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC--
Confidence 777788899999999999874332222 1 2222221 3577 789999999865221000 012244455555543
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||++| .|+.++++.+.+.+.
T Consensus 142 --~~~~e~Sa~~~----------~~v~~~f~~l~~~~~ 167 (187)
T cd04132 142 --FAYLECSAKTM----------ENVEEVFDTAIEEAL 167 (187)
T ss_pred --cEEEEccCCCC----------CCHHHHHHHHHHHHH
Confidence 37999999998 889988888876543
No 209
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=3.6e-16 Score=140.40 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=100.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|+++|..++|||||++++... ... .. ....|... ..++..+..+.+|||||+++|..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~-----~~~-------~~---~~T~~~~~----~~~~~~~~~~~l~D~~G~~~~~~ 76 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLG-----EVV-------TT---IPTIGFNV----ETVEYKNLKFTMWDVGGQDKLRP 76 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcC-----Ccc-------cc---CCccccce----EEEEECCEEEEEEECCCCHhHHH
Confidence 3579999999999999999999632 100 00 00112211 22344678899999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHH-HH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHILLA-RQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~-~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.....+..+|++|+|+|+++.. .....+.+... .. ...| +++|.||.|+.+.... + ++.+.+....+..
T Consensus 77 ~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~-~----~i~~~l~~~~~~~ 150 (182)
T PTZ00133 77 LWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDLPNAMST-T----EVTEKLGLHSVRQ 150 (182)
T ss_pred HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCCCCH-H----HHHHHhCCCcccC
Confidence 8888899999999999997621 12222223222 21 2455 8899999998652111 1 1222221111222
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..++++++||++| .|+++++++|.+.+
T Consensus 151 ~~~~~~~~Sa~tg----------~gv~e~~~~l~~~i 177 (182)
T PTZ00133 151 RNWYIQGCCATTA----------QGLYEGLDWLSANI 177 (182)
T ss_pred CcEEEEeeeCCCC----------CCHHHHHHHHHHHH
Confidence 3356778999999 89999999987654
No 210
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.69 E-value=3.5e-16 Score=153.25 Aligned_cols=154 Identities=23% Similarity=0.238 Sum_probs=118.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH---
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--- 140 (451)
.-++++++|.||+|||||+|+|+ ++..+++.+ ..|+|.+.-...+..++..+.++||+|..+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~------~~d~AIVTd---------I~GTTRDviee~i~i~G~pv~l~DTAGiRet~d 280 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALL------GRDRAIVTD---------IAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD 280 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHh------cCCceEecC---------CCCCccceEEEEEEECCEEEEEEecCCcccCcc
Confidence 34799999999999999999999 455555433 349999998888999999999999999443
Q ss_pred H-----HHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 141 Y-----VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 141 ~-----~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
. +......+..||.+++|+|+++.+..+....+. +...+.| +++|+||+|+...... ... +
T Consensus 281 ~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~-~i~v~NK~DL~~~~~~-----~~~-----~-- 346 (454)
T COG0486 281 VVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKP-IIVVLNKADLVSKIEL-----ESE-----K-- 346 (454)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCC-EEEEEechhccccccc-----chh-----h--
Confidence 2 344555677899999999999987777777766 4445667 6789999999874331 011 1
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.. ...+++.+|++++ +|++.|.++|.+.+..
T Consensus 347 ~~-~~~~~i~iSa~t~----------~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 347 LA-NGDAIISISAKTG----------EGLDALREAIKQLFGK 377 (454)
T ss_pred cc-CCCceEEEEecCc----------cCHHHHHHHHHHHHhh
Confidence 11 2357999999999 8999999999887653
No 211
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=3.2e-16 Score=139.02 Aligned_cols=162 Identities=15% Similarity=0.026 Sum_probs=102.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
++.++|+++|..|+|||||++++.+.... .... ..-+.........+......+.+||++|.+.|
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~--------------~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~ 67 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS--------------PTIKPRYAVNTVEVYGQEKYLILREVGEDEVA 67 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC--------------CccCcceEEEEEEECCeEEEEEEEecCCcccc
Confidence 35689999999999999999999843111 0000 00011111122233333356789999999988
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH-cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.......+..+|++++|+|+++...-+ ..+.+..+.. .++| +++|+||+|+.+..... ..+..++.+.+++
T Consensus 68 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~~~--- 140 (169)
T cd01892 68 ILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIP-CLFVAAKADLDEQQQRY---EVQPDEFCRKLGL--- 140 (169)
T ss_pred cccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCe-EEEEEEccccccccccc---ccCHHHHHHHcCC---
Confidence 776667778999999999997642111 1122222211 2577 77999999986532211 1123445555544
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|+.++++.|.+.+-
T Consensus 141 -~~~~~~Sa~~~----------~~v~~lf~~l~~~~~ 166 (169)
T cd01892 141 -PPPLHFSSKLG----------DSSNELFTKLATAAQ 166 (169)
T ss_pred -CCCEEEEeccC----------ccHHHHHHHHHHHhh
Confidence 24689999998 889999999887543
No 212
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=3.7e-16 Score=144.16 Aligned_cols=158 Identities=17% Similarity=0.103 Sum_probs=104.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++|+++|+.++|||||+++|.+... ..+....+..+. ..+.+......+.||||||+++|
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~----------------~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~ 74 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEF----------------CLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERY 74 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 457999999999999999999984311 001111222222 22233323357889999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|.++...-+.. ..+..+.. .++| +++|.||+|+.......+ ++...+....
T Consensus 75 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~~---~~~~~l~~~~--- 147 (216)
T PLN03110 75 RAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV-IMMAGNKSDLNHLRSVAE---EDGQALAEKE--- 147 (216)
T ss_pred HHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCe-EEEEEEChhcccccCCCH---HHHHHHHHHc---
Confidence 88888888999999999999874332222 23333333 3577 779999999864322111 1233333332
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.++++++||++| .+++++++.|...+.
T Consensus 148 --~~~~~e~SA~~g----------~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 148 --GLSFLETSALEA----------TNVEKAFQTILLEIY 174 (216)
T ss_pred --CCEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 368999999999 888888888876654
No 213
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.68 E-value=5.7e-16 Score=137.94 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|+.++|||||+++|.+......+.. .-+... .....+......+.+|||||+++|....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~--------------t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVP--------------TVFENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--------------ccccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 5899999999999999999985311100000 000000 1122222233467899999999987766
Q ss_pred HHhcccCCEEEEEEeCCCCCCc-cHHHHH-HHHHH--cCCCeEEEEEeeccCCChHHHHHHHH---------HHHHHHHH
Q 013007 146 ITGAAQMDGGILVVSAPDGPMP-QTKEHI-LLARQ--VGVPSLVCFLNKVDLVEDEELLELVE---------MELRELLS 212 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~-~t~~~l-~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~---------~~~~~~l~ 212 (451)
...+..+|++++|+|.++...- ...+.| ..+.. .++| +++|.||+|+.+.....+.+. .+.+++.+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~ 145 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMAN 145 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHH
Confidence 6677889999999998863211 111111 22222 3677 789999999875332222111 22334444
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.++ ..+++++||++| .|++++++.|.+.
T Consensus 146 ~~~----~~~~~~~Sa~~~----------~~v~~lf~~l~~~ 173 (175)
T cd01870 146 KIG----AFGYMECSAKTK----------EGVREVFEMATRA 173 (175)
T ss_pred HcC----CcEEEEeccccC----------cCHHHHHHHHHHH
Confidence 443 257999999998 8999999998753
No 214
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.68 E-value=9.3e-16 Score=138.80 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=103.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee---EEEeeeCCeeEEEEecCChHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA---HVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~---~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.++|+++|..++|||||+.++...... ++. ..|+... ...++.....+.+|||||+++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~----------------~~~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~ 64 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFP----------------KEY--IPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY 64 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCC----------------cCC--CCceEeeeEEEEEECCEEEEEEEEECCCchhh
Confidence 479999999999999999999743110 000 1122111 1122223356889999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHH-HHH-HHHHH--cCCCeEEEEEeeccCCChHHHHHHH---------HHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTK-EHI-LLARQ--VGVPSLVCFLNKVDLVEDEELLELV---------EMELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l-~~~~~--~~ip~iivviNK~D~~~~~~~~~~~---------~~~~~ 208 (451)
......+++.+|++|+|+|.++...-+.. ..| ..+.. .++| +++|.||+|+.+.....+.+ .++..
T Consensus 65 ~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 65 DRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVP-ILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH
Confidence 88777788999999999999874332222 112 22221 3577 78999999996532211111 12334
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++.+..+. .+++++||++| .|+.++++.+.+.+-
T Consensus 144 ~~a~~~~~----~~~~e~SAk~g----------~~v~e~f~~l~~~~~ 177 (191)
T cd01875 144 ALAKQIHA----VKYLECSALNQ----------DGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHcCC----cEEEEeCCCCC----------CCHHHHHHHHHHHHh
Confidence 45554432 57999999998 889999999887554
No 215
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=1.1e-15 Score=154.49 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD---- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~---- 140 (451)
...|+++|.+|+|||||+++|++..... ....++|+......+...+..++|+||||..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkI----------------adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~ 222 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKI----------------ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE 222 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccc----------------cccCcccccceEEEEEECCeEEEEEECCCCccccch
Confidence 4689999999999999999998542111 11225566555555666678899999999521
Q ss_pred ---HHHHHHHhcccCCEEEEEEeCCCC-----CCccHHH---HH-HHH----------HHcCCCeEEEEEeeccCCChHH
Q 013007 141 ---YVKNMITGAAQMDGGILVVSAPDG-----PMPQTKE---HI-LLA----------RQVGVPSLVCFLNKVDLVEDEE 198 (451)
Q Consensus 141 ---~~~~~~~~~~~~d~~ilVvda~~g-----~~~~t~~---~l-~~~----------~~~~ip~iivviNK~D~~~~~~ 198 (451)
.....++.+..+|++++|||+++. ...+... .| .+. ...+.| +|+|+||+|+.+..+
T Consensus 223 g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP-~IVVlNKiDL~da~e 301 (500)
T PRK12296 223 GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP-RLVVLNKIDVPDARE 301 (500)
T ss_pred hhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC-EEEEEECccchhhHH
Confidence 223445566779999999999742 1111111 11 111 123577 668999999975443
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 199 LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+. +...++.. ..+++++||+++ .|+.+|+++|.+.+.
T Consensus 302 l~e~----l~~~l~~~-----g~~Vf~ISA~tg----------eGLdEL~~~L~ell~ 340 (500)
T PRK12296 302 LAEF----VRPELEAR-----GWPVFEVSAASR----------EGLRELSFALAELVE 340 (500)
T ss_pred HHHH----HHHHHHHc-----CCeEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 3322 22333333 257999999998 899999998877664
No 216
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.68 E-value=3.2e-16 Score=139.43 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=95.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHH-------H
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD-------Y 141 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~-------~ 141 (451)
++|++|+|||||+++|++... ......+.|.+.....+... +..+.+|||||+.+ +
T Consensus 1 iiG~~~~GKStll~~l~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 589999999999999985411 01111234444433344455 78899999999743 2
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCC-----C--ccHHHHHHHHH----------HcCCCeEEEEEeeccCCChHHHHHHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGP-----M--PQTKEHILLAR----------QVGVPSLVCFLNKVDLVEDEELLELVE 204 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~-----~--~~t~~~l~~~~----------~~~ip~iivviNK~D~~~~~~~~~~~~ 204 (451)
...+...+..+|++++|+|+.+.. . .+...+...+. ..+.| +++|+||+|+.......+..
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~- 142 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKP-VIYVLNKIDLDDAEELEEEL- 142 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCC-eEEEEEchhcCchhHHHHHH-
Confidence 234455677899999999998753 1 11112222222 13677 77899999998643322111
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..... .....+++++||+++ .|+.++++.+...
T Consensus 143 --~~~~~-----~~~~~~~~~~Sa~~~----------~gl~~l~~~l~~~ 175 (176)
T cd01881 143 --VRELA-----LEEGAEVVPISAKTE----------EGLDELIRAIYEL 175 (176)
T ss_pred --HHHHh-----cCCCCCEEEEehhhh----------cCHHHHHHHHHhh
Confidence 11111 113467999999998 8999999988654
No 217
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.68 E-value=7.8e-16 Score=135.46 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhc--CceEEeeEEEee-eCCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR--GITIATAHVEYE-TAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~ 142 (451)
++|+++|.+++|||||+++|... + ...+.+... |.........+. .....+.+|||||++.|.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~----~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN----G----------AVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC----C----------CCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 48999999999999999999732 0 001111111 122212222232 234678999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
......+..+|++++|+|.++..... ....+..+.. .++| +++|+||+|+.+..+... .+...+....
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~----- 137 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVTD---AQAQAFAQAN----- 137 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCCH---HHHHHHHHHc-----
Confidence 88888889999999999998632211 1222233332 2567 778999999965322111 1112222332
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++++||+++ .|+.++++.|.+.
T Consensus 138 ~~~~~~~Sa~~~----------~gi~~l~~~l~~~ 162 (164)
T cd04101 138 QLKFFKTSALRG----------VGYEEPFESLARA 162 (164)
T ss_pred CCeEEEEeCCCC----------CChHHHHHHHHHH
Confidence 257999999998 8999999988764
No 218
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=4.7e-16 Score=134.63 Aligned_cols=158 Identities=18% Similarity=0.109 Sum_probs=110.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (451)
-...++|.++|..|+|||.|+-++.. +..+++....+.++.....++.++ .++++|||+|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~----------------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE 69 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKD----------------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQE 69 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhcc----------------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccH
Confidence 35578999999999999999999863 344444444555555555555544 568999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
+|...+.++++.|+++|+|.|.++...-. ....+..+.. .++| .++|.||+|+.+.... -.++.+++...++
T Consensus 70 RFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~~~v---~~~~a~~fa~~~~ 145 (205)
T KOG0084|consen 70 RFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEKRVV---STEEAQEFADELG 145 (205)
T ss_pred HHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhheec---CHHHHHHHHHhcC
Confidence 99999999999999999999999743322 2223333333 3678 4589999999753221 1134456666655
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
. .+++++||+.+ .++++.+..|..
T Consensus 146 ~----~~f~ETSAK~~----------~NVe~~F~~la~ 169 (205)
T KOG0084|consen 146 I----PIFLETSAKDS----------TNVEDAFLTLAK 169 (205)
T ss_pred C----cceeecccCCc----------cCHHHHHHHHHH
Confidence 4 22999999988 566666655544
No 219
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=7.2e-16 Score=154.09 Aligned_cols=153 Identities=20% Similarity=0.226 Sum_probs=101.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD--- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~--- 140 (451)
.-.|+++|.+|+|||||+++|++.....+ ....+|.......+... +..++++||||..+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa----------------~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~ 221 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIA----------------NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS 221 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccc----------------cCCcceeceEEEEEEEeCCceEEEEECCCCccccc
Confidence 34899999999999999999995421111 11234555544444444 67899999999632
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCC----ccHHHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHH
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPM----PQTKEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMEL 207 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~----~~t~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~ 207 (451)
+....++.+..+|++++|+|+++... .+.......+.. .+.| +++|+||+|+....+ .+
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP-~IVV~NK~DL~~~~e-------~l 293 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERP-QIVVANKMDLPEAEE-------NL 293 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCc-EEEEEeCCCCcCCHH-------HH
Confidence 33445556677999999999975311 122222233332 3677 668999999854322 22
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.++.+.++ .+++++||+++ .|+++|++.|.+.+.
T Consensus 294 ~~l~~~l~-----~~i~~iSA~tg----------eGI~eL~~~L~~~l~ 327 (424)
T PRK12297 294 EEFKEKLG-----PKVFPISALTG----------QGLDELLYAVAELLE 327 (424)
T ss_pred HHHHHHhC-----CcEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 33444432 47999999998 899999999987765
No 220
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=5.3e-16 Score=143.37 Aligned_cols=159 Identities=14% Similarity=0.027 Sum_probs=103.1
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|..|+|||||++++......... ...-|.+.....+........+.+|||||+++|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~--------------~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc--------------CCccceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 45689999999999999999998743111000 0111222222222222234678999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHH--HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLAR--QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
......++.+|++|+|+|.++...-+... .+..+. ..++| +++|.||+|+....... +++ .+.+..
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v~~----~~~-~~~~~~----- 145 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQV-TFHRKK----- 145 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhhhhccCCH----HHH-HHHHhc-----
Confidence 77777788999999999998754322222 222222 23577 77999999986421111 122 233332
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.++++++||++| .|+.+++++|.+.+.
T Consensus 146 ~~~~~e~SAk~~----------~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 146 NLQYYEISAKSN----------YNFEKPFLYLARKLA 172 (219)
T ss_pred CCEEEEcCCCCC----------CCHHHHHHHHHHHHH
Confidence 367999999999 889999988876553
No 221
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67 E-value=8.1e-16 Score=134.43 Aligned_cols=152 Identities=21% Similarity=0.161 Sum_probs=100.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC--CeeEEEEecCChHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA--KRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~--~~~i~iiDtPG~~~~~~~ 144 (451)
+|+++|++|+|||||+++|++...... .+. .+.+.....+... ...+.+||+||+.+|...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~---------~~~--------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 63 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEE---------YDP--------TIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM 63 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcC---------cCC--------ChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence 689999999999999999985421000 000 0001111122222 356889999999998888
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
....+..+|++++|+|.++... .+....+..+.. .+.| +++++||+|+...... ..+++..+.+.++
T Consensus 64 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---- 135 (160)
T cd00876 64 RDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIP-IVLVGNKCDLENERQV---SKEEGKALAKEWG---- 135 (160)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCccccccee---cHHHHHHHHHHcC----
Confidence 8888889999999999876322 122222322222 2566 7799999998762221 1134445555543
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.|++++|++++ .|+.+++++|.+.
T Consensus 136 -~~~~~~S~~~~----------~~i~~l~~~l~~~ 159 (160)
T cd00876 136 -CPFIETSAKDN----------INIDEVFKLLVRE 159 (160)
T ss_pred -CcEEEeccCCC----------CCHHHHHHHHHhh
Confidence 68999999998 8999999998764
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.67 E-value=2.8e-15 Score=131.91 Aligned_cols=156 Identities=22% Similarity=0.340 Sum_probs=103.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (451)
.|+++|+.|+|||||++.|.+.... ...+...+.|.......++ ..+.+|||||+..
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~---~~~~~~D~~g~~~~~~~~~ 63 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKL--------------ARTSKTPGKTQLINFFNVN---DKFRLVDLPGYGYAKVSKE 63 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCce--------------eeecCCCCcceeEEEEEcc---CeEEEecCCCccccccCHH
Confidence 3899999999999999999842100 0011112344433333222 2789999999543
Q ss_pred ----HHHHHH---HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 141 ----YVKNMI---TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 141 ----~~~~~~---~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
|...+. .....++++++++|..........+.+..+...+.| +++++||+|+....+ .......+...++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~-~~~~~~~~~~~l~~ 141 (170)
T cd01876 64 VKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSE-LAKALKEIKKELKL 141 (170)
T ss_pred HHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHH-HHHHHHHHHHHHHh
Confidence 222222 223356889999999887777777777888888888 778999999976433 22333344444442
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
. . ...+++++||+++ .++.++++.|.++
T Consensus 142 ~-~--~~~~~~~~Sa~~~----------~~~~~l~~~l~~~ 169 (170)
T cd01876 142 F-E--IDPPIILFSSLKG----------QGIDELRALIEKW 169 (170)
T ss_pred c-c--CCCceEEEecCCC----------CCHHHHHHHHHHh
Confidence 1 1 3468999999998 8999999998765
No 223
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.67 E-value=4.8e-16 Score=138.52 Aligned_cols=157 Identities=19% Similarity=0.160 Sum_probs=104.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe---eEEEeeeCCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT---AHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~---~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
++|+++|+.++|||+|+.++...... .+. ..|+.. .....+....++.||||+|+++|.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~----------------~~~--~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~ 63 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP----------------TDY--IPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN 63 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC----------------CCC--CCcceeeeEEEEEECCEEEEEEEEECCCCcccc
Confidence 58999999999999999999843111 000 111111 112222233678899999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHHH-------HHHHHHHHHHHH
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEEL-------LELVEMELRELL 211 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~~-------~~~~~~~~~~~l 211 (451)
......++.+|++|+|+|.++...-+.. ..+..+.. .++| +|+|.||+|+.+.... .....++..++.
T Consensus 64 ~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 64 RLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred ccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 8887889999999999999874432222 23333332 2566 8899999999653210 001123455566
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+..+. .+++++||++| .+++++++.+.+.+
T Consensus 143 ~~~~~----~~~~E~SAk~~----------~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGA----AAYIECSSKTQ----------QNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCC----CEEEECCCCcc----------cCHHHHHHHHHHHH
Confidence 65433 36999999999 89999999988754
No 224
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.67 E-value=7.7e-16 Score=155.68 Aligned_cols=136 Identities=20% Similarity=0.176 Sum_probs=95.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH-
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV- 142 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~- 142 (451)
+.++|+++|++|+|||||+|+|++.. ........|+|.+.....+..++..+.+|||||+.++.
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~---------------~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQD---------------RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC---------------CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 45799999999999999999998531 11111234777777666677778889999999975432
Q ss_pred -------HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 143 -------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 -------~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.....++..+|++++|+|++++...+.. .+..+...++| +|+|+||+|+.+. + . ..+.+.+
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl~~~-~----~----~~~~~~~- 334 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKP-FILVLNKIDLKIN-S----L----EFFVSSK- 334 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCC-EEEEEECccCCCc-c----h----hhhhhhc-
Confidence 2234567889999999999886654444 44445555777 7799999999643 1 1 1222222
Q ss_pred CCCCCCCeeeccccc
Q 013007 216 FPGDEIPIIRGSATS 230 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~ 230 (451)
..|++.+||++
T Consensus 335 ----~~~~~~vSak~ 345 (442)
T TIGR00450 335 ----VLNSSNLSAKQ 345 (442)
T ss_pred ----CCceEEEEEec
Confidence 24789999986
No 225
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.67 E-value=4.9e-16 Score=137.06 Aligned_cols=157 Identities=19% Similarity=0.184 Sum_probs=99.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHH
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (451)
|+++|..|+|||||+++|.+....... ..|+......+...+..+.+|||||+.+|......
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~------------------~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV------------------VPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc------------------cccCCcceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 789999999999999999843111000 01111112334556778999999999999888888
Q ss_pred hcccCCEEEEEEeCCCCCC-ccHHHHHHHHH--HcCCCeEEEEEeeccCCChHHHHHHHHHH--HHHHHHhcCCCCCCCC
Q 013007 148 GAAQMDGGILVVSAPDGPM-PQTKEHILLAR--QVGVPSLVCFLNKVDLVEDEELLELVEME--LRELLSFYKFPGDEIP 222 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~p 222 (451)
.+..+|++++|+|+++... ...++.+..+. ..++| +++|.||+|+..... .+.+.+. +..+.+ ....+
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~-----~~~~~ 136 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLP-LVVLANKQDLPAARS-VQEIHKELELEPIAR-----GRRWI 136 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCCC-HHHHHHHhCChhhcC-----CCceE
Confidence 8999999999999987432 22222233232 14677 779999999875321 1222211 122211 23467
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
++++||++.-.. ...+|+.++++.|..
T Consensus 137 ~~~~Sa~~~~s~----~~~~~v~~~~~~~~~ 163 (164)
T cd04162 137 LQGTSLDDDGSP----SRMEAVKDLLSQLIN 163 (164)
T ss_pred EEEeeecCCCCh----hHHHHHHHHHHHHhc
Confidence 899999872111 111889999888753
No 226
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.67 E-value=5.9e-16 Score=136.98 Aligned_cols=159 Identities=22% Similarity=0.149 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|..++|||||+++|.+. .. . + ...|+......+...+..+++|||||+.+|.....
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~-~---------------~--~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IP-K---------------K--VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CC-c---------------c--ccCcccceEEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999743 00 0 0 01111112223445678899999999999988888
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHH--HHHHHHhcCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEME--LRELLSFYKFPGD 219 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 219 (451)
.++..+|++++|+|+++... ......+..+.. .++| +++|+||+|+.+..... ++.+. +.++.++. ..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~~~~-~i~~~~~l~~~~~~~---~~ 136 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKP-ILVLANKQDKKNALLGA-DVIEYLSLEKLVNEN---KS 136 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCCCHH-HHHHhcCcccccCCC---Cc
Confidence 88999999999999987432 222333333322 3677 77999999997632111 11111 11221111 12
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
..+++++||++|..... ..|+.+-+++|..
T Consensus 137 ~~~~~~~Sa~~g~~~~~----~~g~~~~~~wl~~ 166 (167)
T cd04161 137 LCHIEPCSAIEGLGKKI----DPSIVEGLRWLLA 166 (167)
T ss_pred eEEEEEeEceeCCCCcc----ccCHHHHHHHHhc
Confidence 35789999988621100 1468888888753
No 227
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=1.5e-15 Score=138.01 Aligned_cols=157 Identities=18% Similarity=0.041 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHH--
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
.+|+++|..|+|||||++++.+.... .+....++.+. ....+......+.||||||+.+|
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~----------------~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFP----------------EEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC----------------cccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc
Confidence 48999999999999999999843110 00111111111 12222222256789999997653
Q ss_pred ------HHHHHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHH------HcCCCeEEEEEeeccCCChHHHHHHHHHHHH
Q 013007 142 ------VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR------QVGVPSLVCFLNKVDLVEDEELLELVEMELR 208 (451)
Q Consensus 142 ------~~~~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~------~~~ip~iivviNK~D~~~~~~~~~~~~~~~~ 208 (451)
.......+..+|++++|+|+++...-+. ...+..+. ..++| +++|.||+|+....... .+++.
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl~~~~~~~---~~~~~ 140 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQQRHRFAP---RHVLS 140 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECcccccccccc---HHHHH
Confidence 2223345778999999999987432222 12222222 23567 77999999996522111 11233
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.++. ..++++++||++| .|+++|++.+...+-
T Consensus 141 ~~~~~~----~~~~~~e~Sak~g----------~~v~~lf~~i~~~~~ 174 (198)
T cd04142 141 VLVRKS----WKCGYLECSAKYN----------WHILLLFKELLISAT 174 (198)
T ss_pred HHHHHh----cCCcEEEecCCCC----------CCHHHHHHHHHHHhh
Confidence 333322 2478999999999 889999988876543
No 228
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=8e-16 Score=137.73 Aligned_cols=156 Identities=20% Similarity=0.200 Sum_probs=99.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|++|+|||||+++|++....... .+.... .. .....+......+.+|||||+.+|....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~--------~~t~~~----~~---~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESY--------YPTIEN----TF---SKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccc--------Ccchhh----hE---EEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 58999999999999999999853211000 000000 00 1111122223567899999999998877
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHH-HHHHHH-H---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLA-R---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~-~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
..++..+|++++|+|.++....+.. ..+..+ . ..+.| +|+++||+|+...+.... ++...+.+.++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~---~~~~~~~~~~~----- 137 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQRQVST---EEGKELAESWG----- 137 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcCccCH---HHHHHHHHHcC-----
Confidence 7888899999999999874332222 222222 2 23567 779999999874222111 12334444432
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.+++++||+++ .++.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~----------~gv~~l~~~l~~~~ 162 (180)
T cd04137 138 AAFLESSAREN----------ENVEEAFELLIEEI 162 (180)
T ss_pred CeEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 88888888887654
No 229
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.67 E-value=8.5e-16 Score=141.48 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..++|||||+++|...... . . ..|+.............+.||||||++.|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~----------------~-~--~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK----------------D-T--VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC----------------C-C--CCccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 48999999999999999999743110 0 0 112221112222345678999999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHH----------------HHHHHHH
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEE----------------LLELVEM 205 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~----------------~~~~~~~ 205 (451)
...++.+|++|+|+|.++...-+.. ..+..+.. .++| +|+|.||+|+.++.. ....-.+
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~ 140 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLE 140 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccccccccccccccccccccccccccCCHH
Confidence 8888999999999999874322222 22222222 2466 789999999975100 0011123
Q ss_pred HHHHHHHhcCC--------C-CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 206 ELRELLSFYKF--------P-GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 206 ~~~~~l~~~~~--------~-~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+...+.++.+. . ....+++++||++| .|++++++.+.+.+
T Consensus 141 e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg----------~~V~elf~~i~~~~ 189 (220)
T cd04126 141 DAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG----------YNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHHhCccccccccccccccceEEEeeCCCC----------CCHHHHHHHHHHHH
Confidence 44455554431 0 02368999999999 88888888876543
No 230
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.6e-16 Score=125.85 Aligned_cols=161 Identities=22% Similarity=0.218 Sum_probs=117.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+-.++|+++|+.|+|||.|+.+++..+...|.+..+ |+......+....++.++.||||+|+++|.
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqerfr 70 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQERFR 70 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHHHH
Confidence 456899999999999999999999988888876655 444445566666677889999999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.-+.++++.|++.|||.|.+.... .-.-+.+..... ..+- -|+|.||+|+.+..+.-+.+-+++.+.
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvl-kilvgnk~d~~drrevp~qigeefs~~-------- 141 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVL-KILVGNKIDLADRREVPQQIGEEFSEA-------- 141 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceE-EEeeccccchhhhhhhhHHHHHHHHHh--------
Confidence 999999999999999999986433 222333333332 2333 258999999987555444443333322
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+.-++.+||+.. .+++.|+..+...+-
T Consensus 142 qdmyfletsakea----------~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 142 QDMYFLETSAKEA----------DNVEKLFLDLACRLI 169 (213)
T ss_pred hhhhhhhhcccch----------hhHHHHHHHHHHHHH
Confidence 1234788999987 888888877765443
No 231
>PLN03108 Rab family protein; Provisional
Probab=99.67 E-value=1.1e-15 Score=140.54 Aligned_cols=159 Identities=15% Similarity=0.121 Sum_probs=102.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|+++|+.|+|||||+++|++....... ...-+.+.......+......+.+|||||+++|..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~--------------~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~ 70 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------------DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS 70 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH
Confidence 3579999999999999999999853111000 00012222222223332234678999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHH-HHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTK-EHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|+++...-+.. +.+..+.. .++| ++++.||+|+.+..... .++..++++..+
T Consensus 71 ~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (210)
T PLN03108 71 ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMT-IMLIGNKCDLAHRRAVS---TEEGEQFAKEHG---- 142 (210)
T ss_pred HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccCccccCCC---HHHHHHHHHHcC----
Confidence 888888899999999999874322221 22222222 2566 78999999987522111 123445555543
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
++++++||+++ .++.++++.+...+
T Consensus 143 -~~~~e~Sa~~~----------~~v~e~f~~l~~~~ 167 (210)
T PLN03108 143 -LIFMEASAKTA----------QNVEEAFIKTAAKI 167 (210)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 57999999998 78888777665543
No 232
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.67 E-value=2.6e-15 Score=134.58 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe---eEEEeeeCCeeEEEEecCChH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT---AHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~---~~~~~~~~~~~i~iiDtPG~~ 139 (451)
+..++|+++|..++|||||+.++......... ..|+.. ....+......+.||||+|.+
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~------------------~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY------------------VPTVFENYTASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCcc------------------CCceeeeeEEEEEECCEEEEEEEEECCCch
Confidence 45679999999999999999999843211100 111111 112222233568899999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHHHHH---------HHHHH
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEELLE---------LVEME 206 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~---------~~~~~ 206 (451)
+|......+++.+|++++|+|.++...-+.. ..+..+.. -+.| +|+|.||+|+.+...... .-.++
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEeEChhhhcChhhHHHHHhcCCCCCCHHH
Confidence 9988777888999999999999874332221 22223332 2566 789999999864211110 11235
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhh-HHHHHHHHHh
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDE 253 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~-i~~Ll~~l~~ 253 (451)
..++.+.++. .+++++||+++ .+ +.++++.+..
T Consensus 144 ~~~~a~~~~~----~~~~E~SAk~~----------~n~v~~~F~~~~~ 177 (182)
T cd04172 144 GANMAKQIGA----ATYIECSALQS----------ENSVRDIFHVATL 177 (182)
T ss_pred HHHHHHHcCC----CEEEECCcCCC----------CCCHHHHHHHHHH
Confidence 6667776653 57999999999 87 9988887765
No 233
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=1e-15 Score=138.13 Aligned_cols=157 Identities=20% Similarity=0.141 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|..|+|||||+++|.+...... .....|.+.......+......+.+|||||+++|....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSES--------------TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--------------CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 4899999999999999999984311000 00111222222222333233567899999999998888
Q ss_pred HHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
...+..+|++++|+|.++...-. ...++..+... ..| ++++.||+|+.+...... +....+.+..+ +
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~~---~~~~~~~~~~~-----~ 137 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLVNNKVVDS---NIAKSFCDSLN-----I 137 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCCH---HHHHHHHHHcC-----C
Confidence 88899999999999998743211 12222223322 355 789999999875322111 12233334332 4
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++++||+++ .+++++++.|.+.+
T Consensus 138 ~~~evSa~~~----------~~i~~~f~~l~~~~ 161 (188)
T cd04125 138 PFFETSAKQS----------INVEEAFILLVKLI 161 (188)
T ss_pred eEEEEeCCCC----------CCHHHHHHHHHHHH
Confidence 7999999998 88888888876654
No 234
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.67 E-value=7.3e-16 Score=120.75 Aligned_cols=85 Identities=33% Similarity=0.531 Sum_probs=77.9
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEe-CCeEeeecCCeEEEee
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFEL-ISPLPLQQGQRFALRE 436 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~-~~p~~~~~~~rfvlr~ 436 (451)
++++|+|+++||+++ .+|.+||+|++|+++.++.|++..+.. +++++||.+.|+|+| .+|+|+++++||+||+
T Consensus 2 ~~~~f~A~i~il~~~-----~~i~~Gy~~~l~~~t~~~~~~i~~i~~-~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr~ 75 (87)
T cd03708 2 ACWEFEAEILVLHHP-----TTISPGYQATVHIGSIRQTARIVSIDK-DVLRTGDRALVRFRFLYHPEYLREGQRLIFRE 75 (87)
T ss_pred ceeEEEEEEEEEcCC-----CcccCCCEeEEEEcCCEEEEEEEeccH-hhccCCCeEEEEEEECCCCcEEccCCeEEEEC
Confidence 478999999999974 689999999999999999999998844 899999999999996 6999999999999988
Q ss_pred CCcEEEEEEEEee
Q 013007 437 GGRTVGAGVVSKV 449 (451)
Q Consensus 437 ~~~tig~G~I~~~ 449 (451)
+ +|+|+|+|+++
T Consensus 76 g-~tva~G~I~~~ 87 (87)
T cd03708 76 G-RTKGVGEVTKV 87 (87)
T ss_pred C-CcEEEEEEEEC
Confidence 7 99999999875
No 235
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=9.5e-16 Score=140.90 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee---CCeeEEEEecCChHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET---AKRHYAHVDCPGHADY 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~---~~~~i~iiDtPG~~~~ 141 (451)
.++|+++|..|+|||||+++|++.... ......++.+.....+.. ....+.+|||||++.|
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~----------------~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~ 65 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFA----------------EVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC----------------CCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhH
Confidence 469999999999999999999843110 000111222222222222 2356889999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH-c--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-V--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~-~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.......+..+|++++|+|.++... ....+.+..+.. . ..+.++++.||+|+.+..... .++..++.+.++
T Consensus 66 ~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~---~~~~~~~~~~~~-- 140 (211)
T cd04111 66 RSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT---REEAEKLAKDLG-- 140 (211)
T ss_pred HHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC---HHHHHHHHHHhC--
Confidence 8888888899999999999987322 111222222222 1 223377899999987532211 123344555543
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+++++||+++ .|+.++++.|.+.+.
T Consensus 141 ---~~~~e~Sak~g----------~~v~e~f~~l~~~~~ 166 (211)
T cd04111 141 ---MKYIETSARTG----------DNVEEAFELLTQEIY 166 (211)
T ss_pred ---CEEEEEeCCCC----------CCHHHHHHHHHHHHH
Confidence 67999999998 889999988876543
No 236
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.66 E-value=7.4e-16 Score=119.43 Aligned_cols=83 Identities=41% Similarity=0.754 Sum_probs=77.7
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCC
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
|+|+|+++|+++++|+++.|+|++|++++||++.++|.+ ...+|++|+.+++++++|.|||.|++.|++++..+++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~----~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~ 76 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG----EETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLE 76 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC----ceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcC
Confidence 689999999999999999999999999999999999953 4799999999999999999999999999998888999
Q ss_pred CCeEEec
Q 013007 346 RGQVIAK 352 (451)
Q Consensus 346 ~G~vl~~ 352 (451)
+||+|+.
T Consensus 77 ~G~vl~~ 83 (83)
T cd03696 77 RGDVLSS 83 (83)
T ss_pred CccEEcC
Confidence 9999973
No 237
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.66 E-value=4.7e-16 Score=137.19 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-HHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-YVKNM 145 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-~~~~~ 145 (451)
+|+++|.+|+|||||++++...... +. .+.... +.......+......+.+|||||+.+ +....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~-~~--------~~~t~~------~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI-GE--------YDPNLE------SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc-cc--------cCCChH------HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 5899999999999999998732100 00 000000 11111222222234678999999985 34455
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH-----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ-----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~-----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
...++.+|++++|+|+++...-+. ...+..+.. .++| +++|.||+|+....... .++...+.+.++
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~~~~~~~~~~---- 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVS---TEEGEKLASELG---- 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccC---HHHHHHHHHHcC----
Confidence 667888999999999987533222 222222222 2677 77999999985421111 123334444443
Q ss_pred CCCeeeccccccccCCCcccchh-hHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~~l 255 (451)
.+++++||+++ . ++.++++.+.+.+
T Consensus 138 -~~~~e~Sa~~~----------~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 -CLFFEVSAAED----------YDGVHSVFHELCREV 163 (165)
T ss_pred -CEEEEeCCCCC----------chhHHHHHHHHHHHH
Confidence 57999999987 5 7999999887643
No 238
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.66 E-value=5.5e-16 Score=137.98 Aligned_cols=155 Identities=18% Similarity=0.118 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeeeCCeeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
++++++|..|+|||||+.++....... +.. ....+. ....+......+.+|||||+++|..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~----------------~~~-~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPT----------------EYV-PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC----------------CCC-CceeeeeeEEEEECCEEEEEEEEECCCChhhcc
Confidence 479999999999999999987431100 000 111111 1222322235678999999999877
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHH---------HHHHHHHH
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVCFLNKVDLVEDEELLEL---------VEMELREL 210 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~---------~~~~~~~~ 210 (451)
.....++.+|++++|+|.++...-+. ...+..+.. .++| ++++.||+|+.+....... -.++...+
T Consensus 64 ~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 142 (173)
T cd04130 64 LRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAP-IILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKAL 142 (173)
T ss_pred ccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHH
Confidence 76677889999999999987433222 223333333 3567 7899999999753221110 11234455
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
.+..+. .+++++||++| .|++++++.+.
T Consensus 143 a~~~~~----~~~~e~Sa~~~----------~~v~~lf~~~~ 170 (173)
T cd04130 143 AEKIGA----CEYIECSALTQ----------KNLKEVFDTAI 170 (173)
T ss_pred HHHhCC----CeEEEEeCCCC----------CCHHHHHHHHH
Confidence 555433 47999999999 89999998764
No 239
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=3e-15 Score=133.78 Aligned_cols=157 Identities=14% Similarity=0.059 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.+|+++|..++|||||++++.+....... ...+.... ..+.+......+.+|||||+++|...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~----------------~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETY----------------VPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCc----------------CCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc
Confidence 58999999999999999999854211100 00110110 11222223356889999999999877
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHH--cCCCeEEEEEeeccCCChHHHHH---------HHHHHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVCFLNKVDLVEDEELLE---------LVEMELRELL 211 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~---------~~~~~~~~~l 211 (451)
....++.+|++|+|+|.++...-+. ..++..+.. -+.| +|+|.||+|+.++..... .-.++..++.
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCC-EEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 7778889999999999987443222 223333333 2566 789999999864211110 1123455666
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhh-HHHHHHHHHh
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKA-ILKLMDAVDE 253 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~-i~~Ll~~l~~ 253 (451)
+.++. .+++++||++| ++ +.++++.+..
T Consensus 145 ~~~~~----~~~~E~SA~~~----------~~~v~~~F~~~~~ 173 (178)
T cd04131 145 KQLGA----EIYLECSAFTS----------EKSVRDIFHVATM 173 (178)
T ss_pred HHhCC----CEEEECccCcC----------CcCHHHHHHHHHH
Confidence 66543 47999999998 74 8888887765
No 240
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=1.3e-15 Score=142.87 Aligned_cols=159 Identities=17% Similarity=0.078 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCc-eEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGI-TIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~-t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.+|+++|..|+|||||++++.+....... ...+ ......+.+......+.||||+|+++|...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y----------------~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~ 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQY----------------TPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCC----------------CCChhHhEEEEEEECCEEEEEEEEECCCChhhhHH
Confidence 37999999999999999999743111100 0000 011112222222356889999999998776
Q ss_pred HHHhcccCCEEEEEEeCCCCCCcc-HHHHHHHHHH------------cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ------------VGVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~------------~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l 211 (451)
...++..+|++|+|+|.++...-+ ....+..+.. .++| +|+|.||+|+....+. ..+++.+++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~~~~~v---~~~ei~~~~ 140 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRDFPREV---QRDEVEQLV 140 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccchhcccc---CHHHHHHHH
Confidence 666778899999999998742211 1222222211 2567 7899999999742111 112344444
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDP 258 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~ 258 (451)
... ...+++++||+++ .|++++++.|......|
T Consensus 141 ~~~----~~~~~~evSAktg----------~gI~elf~~L~~~~~~p 173 (247)
T cd04143 141 GGD----ENCAYFEVSAKKN----------SNLDEMFRALFSLAKLP 173 (247)
T ss_pred Hhc----CCCEEEEEeCCCC----------CCHHHHHHHHHHHhccc
Confidence 321 2367999999998 89999999998865433
No 241
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.66 E-value=1.8e-15 Score=133.02 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADYVK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~~~ 143 (451)
.+|+++|..++|||||+.++...... .+....+..+.....+...+ ..+.+|||||+++|..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH----------------SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC----------------CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh
Confidence 37999999999999999999743111 01111122222222233333 5678999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+..+|++++|+|.++... ......+..+... ++| +++|.||+|+.+..... .++...+.+.++
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v~---~~~~~~~~~~~~---- 136 (161)
T cd04117 65 ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQVG---DEQGNKLAKEYG---- 136 (161)
T ss_pred hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccccccCCC---HHHHHHHHHHcC----
Confidence 88888889999999999887322 1122222222222 456 78999999986532211 123344444432
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+++++||+++ .|++++++.|.+.
T Consensus 137 -~~~~e~Sa~~~----------~~v~~~f~~l~~~ 160 (161)
T cd04117 137 -MDFFETSACTN----------SNIKESFTRLTEL 160 (161)
T ss_pred -CEEEEEeCCCC----------CCHHHHHHHHHhh
Confidence 57999999998 8999999988653
No 242
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.1e-16 Score=147.55 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=110.8
Q ss_pred ccccCCcccchhccCcccccccccccccccccCCCCCCccccchhhhccCc-ceeEEEEEcCCCCcHHHHHHHHHHHHHh
Q 013007 13 RIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVNPWWRSMATFTRTK-LHVNVGTIGHVDHGKTTLTAAITKVLAE 91 (451)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~I~viG~~~~GKSTLi~~L~~~~~~ 91 (451)
+++.+|.+.+.|.+..+..-..+.+-..........+...+..+.++|.-. ..++|+++|++|+|||||+++|++...+
T Consensus 115 ~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE 194 (346)
T COG1084 115 RLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE 194 (346)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCc
Confidence 466777777777665544444444443444444444444555666677655 4589999999999999999999977555
Q ss_pred cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH--------HHHHHHHhccc-CCEEEEEEeCC
Q 013007 92 EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD--------YVKNMITGAAQ-MDGGILVVSAP 162 (451)
Q Consensus 92 ~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~--------~~~~~~~~~~~-~d~~ilVvda~ 162 (451)
.....| +|-.....+|+....++++|||||..| .-...+.+++. .++++|++|++
T Consensus 195 vA~YPF----------------TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~S 258 (346)
T COG1084 195 VAPYPF----------------TTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPS 258 (346)
T ss_pred cCCCCc----------------cccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCc
Confidence 444433 233445556777788999999999544 34455556664 68899999998
Q ss_pred C--CCC--ccHHHHHHHHHHcCCCeEEEEEeeccCCChH
Q 013007 163 D--GPM--PQTKEHILLARQVGVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 163 ~--g~~--~~t~~~l~~~~~~~ip~iivviNK~D~~~~~ 197 (451)
. |.. .|..-.-..-..++.| +++|+||+|..+.+
T Consensus 259 e~cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK~D~~~~e 296 (346)
T COG1084 259 ETCGYSLEEQISLLEEIKELFKAP-IVVVINKIDIADEE 296 (346)
T ss_pred cccCCCHHHHHHHHHHHHHhcCCC-eEEEEecccccchh
Confidence 6 332 3332222333345655 88999999998643
No 243
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.65 E-value=1.9e-15 Score=123.32 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=78.8
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-------------CccccCCCCEEEEEEEeCCeE
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-------------DVKMVMPGDNVNAAFELISPL 424 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-------------~~~~l~~g~~~~v~~~~~~p~ 424 (451)
.+++|+|+++||+++ .+|..||++.+|+++.++.|+|..+. +++++++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi 76 (107)
T cd04093 2 SSTRFEARILTFNVD-----KPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPI 76 (107)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeE
Confidence 468899999999974 68999999999999999999997541 468999999999999999999
Q ss_pred eeecC------CeEEEeeCCcEEEEEEEEee
Q 013007 425 PLQQG------QRFALREGGRTVGAGVVSKV 449 (451)
Q Consensus 425 ~~~~~------~rfvlr~~~~tig~G~I~~~ 449 (451)
|++++ +||+||++|.|+|+|+|+++
T Consensus 77 ~~e~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 77 PLELFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EEEEcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 99987 89999999999999999875
No 244
>PRK11058 GTPase HflX; Provisional
Probab=99.64 E-value=1.8e-15 Score=152.15 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=98.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHHH---
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADY--- 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~--- 141 (451)
.+|+++|.+|+|||||+|+|++.. .+ .....+.|.+.....+...+ ..+.+|||||..+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~------~~----------v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEAR------VY----------AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc------ee----------eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCH
Confidence 589999999999999999998531 10 01112445555443444444 37899999997321
Q ss_pred -----HHHHHHhcccCCEEEEEEeCCCCCCccHH----HHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 142 -----VKNMITGAAQMDGGILVVSAPDGPMPQTK----EHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 142 -----~~~~~~~~~~~d~~ilVvda~~g~~~~t~----~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
+..+...+..+|++++|+|+++....... ..+..+...++| +++|+||+|+.+.... .+ .. .
T Consensus 262 ~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL~~~~~~--~~----~~--~ 332 (426)
T PRK11058 262 DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDMLDDFEP--RI----DR--D 332 (426)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCC-EEEEEEcccCCCchhH--HH----HH--H
Confidence 22345567889999999999885432222 223333334677 7799999999753211 11 11 1
Q ss_pred hcCCCCCCCC-eeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIP-IIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~p-vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+ .| ++++||++| .|+++|++.|.+.+.
T Consensus 333 ~~~-----~~~~v~ISAktG----------~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EEN-----KPIRVWLSAQTG----------AGIPLLFQALTERLS 362 (426)
T ss_pred hcC-----CCceEEEeCCCC----------CCHHHHHHHHHHHhh
Confidence 112 23 588999999 899999999988765
No 245
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.4e-15 Score=155.12 Aligned_cols=153 Identities=21% Similarity=0.334 Sum_probs=113.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
.+|+++|++|+|||||+|+|++.....|+. .|+|++.....+...++++.++|.||--+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNw----------------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNW----------------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCC----------------CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 469999999999999999999776555542 28999999999999999999999999322
Q ss_pred ----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 ----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
-.++.+. -..+|+++-|+||++ .+.....-.++..+|+| +|+++|++|..+... ++-+.+++-+.+|
T Consensus 68 ~DE~Var~~ll-~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p-~ilaLNm~D~A~~~G----i~ID~~~L~~~LG- 138 (653)
T COG0370 68 EDEKVARDFLL-EGKPDLIVNVVDATN--LERNLYLTLQLLELGIP-MILALNMIDEAKKRG----IRIDIEKLSKLLG- 138 (653)
T ss_pred chHHHHHHHHh-cCCCCEEEEEcccch--HHHHHHHHHHHHHcCCC-eEEEeccHhhHHhcC----CcccHHHHHHHhC-
Confidence 1121111 135799999999975 22223333456678999 789999999764322 2224455556655
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+|++++||++| .|++++++.+.+..+.
T Consensus 139 ----vPVv~tvA~~g----------~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 139 ----VPVVPTVAKRG----------EGLEELKRAIIELAES 165 (653)
T ss_pred ----CCEEEEEeecC----------CCHHHHHHHHHHhccc
Confidence 69999999999 9999999999876553
No 246
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.64 E-value=2.5e-15 Score=139.22 Aligned_cols=161 Identities=16% Similarity=0.090 Sum_probs=103.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|+++|..++|||+|+.++............. +.... ..+.+......+.||||+|+++|..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi--------------~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENYT-AGLETEEQRVELSLWDTSGSPYYDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce--------------eeeeE-EEEEECCEEEEEEEEeCCCchhhHH
Confidence 46799999999999999999997432111100000 11110 1122222335688999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHH--cCCCeEEEEEeeccCCChHHHH---------HHHHHHHHHH
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ--VGVPSLVCFLNKVDLVEDEELL---------ELVEMELREL 210 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~---------~~~~~~~~~~ 210 (451)
....+++.+|++++|+|.++...-+. ..++..+.. -+.| +|+|.||+|+.+..... ..-.++..++
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 77788999999999999987443322 122233332 2566 78999999986421100 0112356677
Q ss_pred HHhcCCCCCCCCeeeccccccccCCCcccchh-hHHHHHHHHHhh
Q 013007 211 LSFYKFPGDEIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDEY 254 (451)
Q Consensus 211 l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~~ 254 (451)
.+.+++ .+++++||++| + +++++++.+...
T Consensus 156 a~~~~~----~~~~EtSAktg----------~~~V~e~F~~~~~~ 186 (232)
T cd04174 156 AKQLGA----EVYLECSAFTS----------EKSIHSIFRSASLL 186 (232)
T ss_pred HHHcCC----CEEEEccCCcC----------CcCHHHHHHHHHHH
Confidence 777654 36899999998 6 688888777543
No 247
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.63 E-value=2e-15 Score=122.49 Aligned_cols=84 Identities=27% Similarity=0.411 Sum_probs=76.6
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-------------CCccccCCCCEEEEEEEeCCeE
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-------------GDVKMVMPGDNVNAAFELISPL 424 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-------------~~~~~l~~g~~~~v~~~~~~p~ 424 (451)
.+++|+|+++||+++ .+|.+||++.+|+++.+++|+|..+ +++++|++||.+.|+|++.+|+
T Consensus 2 ~~~~f~A~v~~l~~~-----~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi 76 (104)
T cd03705 2 VAESFTAQVIVLNHP-----GQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPL 76 (104)
T ss_pred cccEEEEEEEEECCC-----CcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCee
Confidence 368899999999974 6899999999999999999999855 2468999999999999999999
Q ss_pred eeecC------CeEEEeeCCcEEEEEEE
Q 013007 425 PLQQG------QRFALREGGRTVGAGVV 446 (451)
Q Consensus 425 ~~~~~------~rfvlr~~~~tig~G~I 446 (451)
|++++ +||+|||+|.|+|+|+|
T Consensus 77 ~~e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 77 VVETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEEEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99997 89999999999999986
No 248
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.63 E-value=4.1e-15 Score=114.26 Aligned_cols=81 Identities=35% Similarity=0.506 Sum_probs=74.3
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCC
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
|||+|+++|+.++.|+.++|+|++|.+++||+++++|.+ ..++|++|+.++.++++|.|||+|++.|+ +..+++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~----~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~ 74 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG----KTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVS 74 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC----CeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccC
Confidence 689999999988888889999999999999999999954 57999999999999999999999999998 467899
Q ss_pred CCeEEec
Q 013007 346 RGQVIAK 352 (451)
Q Consensus 346 ~G~vl~~ 352 (451)
+|++||.
T Consensus 75 ~G~vl~~ 81 (81)
T cd03695 75 RGDVIVA 81 (81)
T ss_pred CCCEEeC
Confidence 9999984
No 249
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=5.9e-15 Score=129.76 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=110.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|+++|.+++|||.++-++............+ |+......+..+.....+.+|||.|+++|.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--------------GIDFk~kti~l~g~~i~lQiWDtaGQerf~ 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--------------GIDFKIKTIELDGKKIKLQIWDTAGQERFR 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE--------------EEEEEEEEEEeCCeEEEEEEEEcccchhHH
Confidence 456899999999999999999987543332222221 333333333344344567899999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
..+-.+++.|++++||+|.++... ......+..... .+++ +++|.||+|+...... -.++-+.+..++|
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~~R~V---~~e~ge~lA~e~G--- 148 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVV-KILVGNKCDLEEKRQV---SKERGEALAREYG--- 148 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCc-EEEeeccccccccccc---cHHHHHHHHHHhC---
Confidence 999999999999999999987433 222333333332 3677 6689999999763221 2345667777876
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
++++++||++| .++++.+-.|.+.
T Consensus 149 --~~F~EtSAk~~----------~NI~eaF~~La~~ 172 (207)
T KOG0078|consen 149 --IKFFETSAKTN----------FNIEEAFLSLARD 172 (207)
T ss_pred --CeEEEccccCC----------CCHHHHHHHHHHH
Confidence 47999999999 6777666665543
No 250
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.63 E-value=5.6e-15 Score=126.16 Aligned_cols=162 Identities=17% Similarity=0.143 Sum_probs=107.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
+...++|.++|.+|+|||+|++++........+...+. ...-...+.++.....++||||+|+++|
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--------------adFltKev~Vd~~~vtlQiWDTAGQERF 71 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--------------ADFLTKEVQVDDRSVTLQIWDTAGQERF 71 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc--------------hhheeeEEEEcCeEEEEEEEecccHHHh
Confidence 45568999999999999999999986544333322221 1111122223322245689999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHH--HHHHHc------CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHI--LLARQV------GVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l--~~~~~~------~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
...-...++.+|.+++|.|.+..-.....+.| +++... ..| ||++.||+|+...+.+... .+...+.++.
T Consensus 72 qsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FP-FVilGNKiD~~~~~~r~VS-~~~Aq~WC~s 149 (210)
T KOG0394|consen 72 QSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFP-FVILGNKIDVDGGKSRQVS-EKKAQTWCKS 149 (210)
T ss_pred hhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCccc-EEEEcccccCCCCccceee-HHHHHHHHHh
Confidence 99888889999999999998874444443333 223322 356 8899999999763222111 2244555655
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
- .++|++++||+.+ .++.+.++.+..
T Consensus 150 ~----gnipyfEtSAK~~----------~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 150 K----GNIPYFETSAKEA----------TNVDEAFEEIAR 175 (210)
T ss_pred c----CCceeEEeccccc----------ccHHHHHHHHHH
Confidence 4 3699999999988 667776666654
No 251
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.63 E-value=1.1e-14 Score=134.17 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
++|+++|..++|||+|+.++.+.... ++....+.... ..+.++.....+.||||+|++.|...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~----------------~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP----------------GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC----------------CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 58999999999999999999843111 00000111000 11222223356789999999999888
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccH-HHHHH-HHHH--cCCCeEEEEEeeccCCChHHHHHH---------HHHHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHIL-LARQ--VGVPSLVCFLNKVDLVEDEELLEL---------VEMELRELL 211 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~-~~~~--~~ip~iivviNK~D~~~~~~~~~~---------~~~~~~~~l 211 (451)
...++..+|++|+|+|.++...-+. ...|. .... .++| +|+|.||+|+.++....+. ..++...+.
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCC-EEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 8888999999999999987432211 12222 1221 3567 7899999999753221111 113445566
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchh-hHHHHHHHHHh
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKK-AILKLMDAVDE 253 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~-~i~~Ll~~l~~ 253 (451)
+.++. .+++++||+++ + ++.++++....
T Consensus 145 k~~~~----~~y~E~SAk~~----------~~~V~~~F~~~~~ 173 (222)
T cd04173 145 KQVGA----VSYVECSSRSS----------ERSVRDVFHVATV 173 (222)
T ss_pred HHcCC----CEEEEcCCCcC----------CcCHHHHHHHHHH
Confidence 66543 58999999987 5 48887776654
No 252
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.63 E-value=4e-15 Score=137.75 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+|+++|..|+|||||++++....... . ..+...+.......+.+......+.+|||||++++....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~-----------~--~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDD-----------H--AYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDS 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCc-----------c--CcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhH
Confidence 379999999999999999997331110 0 000000111112223333345678999999998554432
Q ss_pred HHhcc-cCCEEEEEEeCCCCCC-ccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 146 ITGAA-QMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 146 ~~~~~-~~d~~ilVvda~~g~~-~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.+. .+|++++|+|+++... ....+.+..+.. .++| +|+|.||+|+.+..... .++..++.+.+
T Consensus 68 --~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~~v~---~~~~~~~a~~~----- 136 (221)
T cd04148 68 --CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRP-IILVGNKSDLARSREVS---VQEGRACAVVF----- 136 (221)
T ss_pred --HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEEChhccccceec---HHHHHHHHHHc-----
Confidence 344 8999999999987432 112233333333 3577 78999999987532211 11223344433
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+++++||+++ .|++++++.+.+.+.
T Consensus 137 ~~~~~e~SA~~~----------~gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQ----------HNVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCC----------CCHHHHHHHHHHHHH
Confidence 257999999998 899999999987653
No 253
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.62 E-value=2.6e-15 Score=157.18 Aligned_cols=145 Identities=23% Similarity=0.270 Sum_probs=102.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH-----HH
Q 013007 72 GHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN-----MI 146 (451)
Q Consensus 72 G~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~-----~~ 146 (451)
|.+|+|||||+|+|++.... ....+|+|++.....++.++.++++|||||+.+|... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~----------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT----------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe----------------ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 88999999999999854211 1123488888877777777888999999998876321 11
Q ss_pred H---hcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 147 T---GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 147 ~---~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
+ ....+|++++|+|+++. ....+....+...++| +++|+||+|+.+.... ..+.+++.+.++ .|+
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~~i----~~d~~~L~~~lg-----~pv 132 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIP-MILALNLVDEAEKKGI----RIDEEKLEERLG-----VPV 132 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCC-EEEEEehhHHHHhCCC----hhhHHHHHHHcC-----CCE
Confidence 1 12468999999999872 2333444455567888 7799999998642221 112344444443 689
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+++||++| +|++++++.+.+.
T Consensus 133 v~tSA~tg----------~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 133 VPTSATEG----------RGIERLKDAIRKA 153 (591)
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999999 8999999999764
No 254
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.62 E-value=3.2e-15 Score=135.80 Aligned_cols=148 Identities=14% Similarity=0.054 Sum_probs=97.5
Q ss_pred EcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhc--CceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHh
Q 013007 71 IGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR--GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITG 148 (451)
Q Consensus 71 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~ 148 (451)
+|..++|||||+.++..... ..+... |.+.....+.+......+.||||||+++|......+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f----------------~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~ 64 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF----------------EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGY 64 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC----------------CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHH
Confidence 69999999999999973211 111111 122222222233334678999999999998888888
Q ss_pred cccCCEEEEEEeCCCCCCccHH-HHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 149 AAQMDGGILVVSAPDGPMPQTK-EHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~~~t~-~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
++.+|++|+|+|.++....+.. ..+..+.. .++| +++|.||+|+.... .. .+.+ .+.+.. .+++++
T Consensus 65 ~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~-v~---~~~~-~~~~~~-----~~~~~e 133 (200)
T smart00176 65 YIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIP-IVLCGNKVDVKDRK-VK---AKSI-TFHRKK-----NLQYYD 133 (200)
T ss_pred hcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCC-EEEEEECccccccc-CC---HHHH-HHHHHc-----CCEEEE
Confidence 9999999999999985433222 22233333 3677 77999999985421 11 1111 233332 367999
Q ss_pred ccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 226 GSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 226 ~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+||++| .|+.+++++|...+
T Consensus 134 ~SAk~~----------~~v~~~F~~l~~~i 153 (200)
T smart00176 134 ISAKSN----------YNFEKPFLWLARKL 153 (200)
T ss_pred EeCCCC----------CCHHHHHHHHHHHH
Confidence 999999 88999999988655
No 255
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=5.8e-15 Score=126.29 Aligned_cols=155 Identities=16% Similarity=0.101 Sum_probs=108.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
...++.++|..|+|||.|+.+++......-.. -.+.++.. .+..+....++++|||.||+.|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd----------------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~f 68 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD----------------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESF 68 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc----------------ceeeeeeceeEEEEcCceEEEEEEecCCcHHH
Confidence 45799999999999999999998442111110 01222222 2333334457899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
..-+.++++.+.+||||.|.+.... .....+|.-++.. ++. ++++.||+|+....++ -+++-+.+.++.|+
T Consensus 69 rsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~rR~V---s~EEGeaFA~ehgL- 143 (216)
T KOG0098|consen 69 RSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMV-IMLIGNKSDLEARREV---SKEEGEAFAREHGL- 143 (216)
T ss_pred HHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcE-EEEEcchhhhhccccc---cHHHHHHHHHHcCc-
Confidence 9999999999999999999987433 2223333444444 444 6788999999864432 24577788888765
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+++.+||+++ +++++.+.....
T Consensus 144 ----ifmETSakt~----------~~VEEaF~nta~ 165 (216)
T KOG0098|consen 144 ----IFMETSAKTA----------ENVEEAFINTAK 165 (216)
T ss_pred ----eeehhhhhhh----------hhHHHHHHHHHH
Confidence 5889999999 788776655543
No 256
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=1.2e-14 Score=132.24 Aligned_cols=165 Identities=21% Similarity=0.214 Sum_probs=105.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc-CccceeeeeccCCchhhhhcCceEEeeEEEeee-CCeeEEEEecCChH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-AKRHYAHVDCPGHA---- 139 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-~~~~i~iiDtPG~~---- 139 (451)
++|+++|.+|+|||||+|+|++..... |.... + ....|..... +.. ....+.+|||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~------~------~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~ 67 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPT------G------VVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAF 67 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCcccc------C------ccccccCcee--eecCCCCCceEEeCCCCCcccC
Confidence 589999999999999999998642111 11000 0 0011111111 111 13468999999963
Q ss_pred ---HHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh------------HHHHHHHH
Q 013007 140 ---DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED------------EELLELVE 204 (451)
Q Consensus 140 ---~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~------------~~~~~~~~ 204 (451)
+|+..+ .+..+|++++|.| ..........+..+...+.| +++|+||+|+..+ ++.++.+.
T Consensus 68 ~~~~~l~~~--~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~ 142 (197)
T cd04104 68 PPDDYLEEM--KFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKK-FYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIR 142 (197)
T ss_pred CHHHHHHHh--CccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCC-EEEEEecccchhhhhhccccccccHHHHHHHHH
Confidence 444432 3567898888754 34566666777788888888 7899999999642 13344555
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCC
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPE 259 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~ 259 (451)
+.+.+.+...+. ...+|+.+|+... ..+++..|.+++...+|...
T Consensus 143 ~~~~~~~~~~~~--~~p~v~~vS~~~~--------~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 143 DNCLENLQEAGV--SEPPVFLVSNFDP--------SDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHHHHHcCC--CCCCEEEEeCCCh--------hhcChHHHHHHHHHHhhHHH
Confidence 555566655443 3468999999731 11789999999998888543
No 257
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=3.2e-15 Score=133.26 Aligned_cols=158 Identities=21% Similarity=0.211 Sum_probs=108.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+...+|+++|..|||||||+++|... .... ...|.......+...+..+.+||.+|+..+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~-----~~~~--------------~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNG-----EISE--------------TIPTIGFNIEEIKYKGYSLTIWDLGGQESF 71 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSS-----SEEE--------------EEEESSEEEEEEEETTEEEEEEEESSSGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhc-----cccc--------------cCcccccccceeeeCcEEEEEEeccccccc
Confidence 466789999999999999999999732 1000 011222233445567889999999999888
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHH----cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~----~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
......++..+|++|+|||+++.. ..+.++.+..+.. .++| ++++.||+|+.+... .+ ++.+.+....+
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~~~-~~----~i~~~l~l~~l 145 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIP-ILILANKQDLPDAMS-EE----EIKEYLGLEKL 145 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTSST-HH----HHHHHTTGGGT
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccce-EEEEeccccccCcch-hh----HHHhhhhhhhc
Confidence 777777888999999999998632 2334444433322 3567 778999999876321 11 23333322222
Q ss_pred C-CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 217 P-GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 217 ~-~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
. ...+.++.+||.+| +|+.+.+++|.+.
T Consensus 146 ~~~~~~~v~~~sa~~g----------~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 146 KNKRPWSVFSCSAKTG----------EGVDEGLEWLIEQ 174 (175)
T ss_dssp TSSSCEEEEEEBTTTT----------BTHHHHHHHHHHH
T ss_pred ccCCceEEEeeeccCC----------cCHHHHHHHHHhc
Confidence 2 35677999999999 9999999998764
No 258
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.60 E-value=7.3e-15 Score=118.81 Aligned_cols=84 Identities=40% Similarity=0.691 Sum_probs=77.3
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeC-----------CccccCCCCEEEEEEEeCCeEee
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLG-----------DVKMVMPGDNVNAAFELISPLPL 426 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~-----------~~~~l~~g~~~~v~~~~~~p~~~ 426 (451)
++++|+|++.++.++ .+|++||++.+|+++.++.|+|..+. +++.+++||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~~-----~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~ 76 (102)
T cd01513 2 AVDKFVAEIYVLDHP-----EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVAL 76 (102)
T ss_pred cccEEEEEEEEECCC-----cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEE
Confidence 468999999999874 58999999999999999999998874 47899999999999999999999
Q ss_pred e------cCCeEEEeeCCcEEEEEEE
Q 013007 427 Q------QGQRFALREGGRTVGAGVV 446 (451)
Q Consensus 427 ~------~~~rfvlr~~~~tig~G~I 446 (451)
+ .++||+||++++|+|+|+|
T Consensus 77 e~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 77 ETFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EEhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9 7899999999999999986
No 259
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.60 E-value=8.8e-15 Score=125.53 Aligned_cols=148 Identities=23% Similarity=0.214 Sum_probs=97.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCce-EEeeEEEee--eCCeeEEEEecCChHHHHHHHH
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGIT-IATAHVEYE--TAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t-~~~~~~~~~--~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
++|++|+|||||+++|.+.... ..+. ..| .+.....+. .....+.+||+||+.++.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~---------------~~~~--~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 63 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV---------------PEEY--ETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRR 63 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC---------------Cccc--ccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHH
Confidence 5899999999999999854221 0000 111 122222222 2256789999999999988888
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHHH-----HHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEHI-----LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~l-----~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
..+..+|++++|+|++++........+ ......++| +++++||+|+.......... ........ ...
T Consensus 64 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~~~~~~~---~~~~~~~~----~~~ 135 (157)
T cd00882 64 LYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIP-IILVGNKIDLPEERVVSEEE---LAEQLAKE----LGV 135 (157)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCc-EEEEEeccccccccchHHHH---HHHHHHhh----cCC
Confidence 888899999999999986544443332 233345677 78999999998643321111 01111111 347
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
+++++|+..+ .++.+++++|.
T Consensus 136 ~~~~~s~~~~----------~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFETSAKTG----------ENVEELFEELA 156 (157)
T ss_pred cEEEEecCCC----------CChHHHHHHHh
Confidence 8999999988 78999988874
No 260
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.60 E-value=1.5e-14 Score=115.52 Aligned_cols=95 Identities=32% Similarity=0.500 Sum_probs=87.1
Q ss_pred CeEEecCCCcccccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEee
Q 013007 347 GQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPL 426 (451)
Q Consensus 347 G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~ 426 (451)
|++++.++...+++.|++++.++... ..++++++++++|+++.++.|+|..++ .+.+.+|+...++++|++|+++
T Consensus 1 G~vl~~~~~~~~~~~~~~~i~~l~~~----~~~l~~~~~v~~~~Gt~~v~~ri~ll~-~~~~~pg~~~~a~l~l~~pl~~ 75 (97)
T cd04094 1 GDVLADPGSLLPTRRLDVRLTVLLSA----PRPLKHRQRVHLHHGTSEVLARVVLLD-RDELAPGEEALAQLRLEEPLVA 75 (97)
T ss_pred CCEEecCCCcCCceEEEEEEEEECCC----CccCCCCCeEEEEeccceEEEEEEeCC-ccccCCCCEEEEEEEECCcEee
Confidence 78999988777789999999998865 367999999999999999999999884 6789999999999999999999
Q ss_pred ecCCeEEEeeCC--cEEEEEEE
Q 013007 427 QQGQRFALREGG--RTVGAGVV 446 (451)
Q Consensus 427 ~~~~rfvlr~~~--~tig~G~I 446 (451)
++|+||+||+.+ +|+|+|+|
T Consensus 76 ~~gdrfilR~~~~~~tiggG~V 97 (97)
T cd04094 76 LRGDRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred cCCCeEEEeeCCCCeEEEeEEC
Confidence 999999999997 99999986
No 261
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=5.7e-14 Score=142.78 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=85.0
Q ss_pred CeeEEEEecCChHH-----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCC--CeEEEEEeeccCCC-hHH
Q 013007 127 KRHYAHVDCPGHAD-----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV--PSLVCFLNKVDLVE-DEE 198 (451)
Q Consensus 127 ~~~i~iiDtPG~~~-----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~i--p~iivviNK~D~~~-~~~ 198 (451)
..++.|+||||... +.+.|...+..+|++++|+|+..+.....++.+..++..+. | +++|+||+|+.+ ..+
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~P-VILVVNKIDl~dreed 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVP-LYVLVNKFDQQDRNSD 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCC-EEEEEEcccCCCcccc
Confidence 36789999999432 45667778899999999999998888888888888887774 7 779999999975 222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 199 LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+.+.+.+...+..... ....|||+||++| .++++|++.|...
T Consensus 308 dkE~Lle~V~~~L~q~~i--~f~eIfPVSAlkG----------~nid~LLdeI~~~ 351 (741)
T PRK09866 308 DADQVRALISGTLMKGCI--TPQQIFPVSSMWG----------YLANRARHELANN 351 (741)
T ss_pred hHHHHHHHHHHHHHhcCC--CCceEEEEeCCCC----------CCHHHHHHHHHhC
Confidence 233344444434333222 2346999999999 8999999999763
No 262
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.57 E-value=1.7e-14 Score=130.06 Aligned_cols=158 Identities=15% Similarity=0.077 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.+|+++|..|+|||||+++|....... +........ .....+......+.+|||||+++|...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE----------------EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc----------------ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc
Confidence 589999999999999999997331110 000000000 111122222345789999999887654
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHH--HHHHHHHH--cCCCeEEEEEeeccCCChHH--------HHHHHHHHHHHHHH
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTK--EHILLARQ--VGVPSLVCFLNKVDLVEDEE--------LLELVEMELRELLS 212 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~--~~l~~~~~--~~ip~iivviNK~D~~~~~~--------~~~~~~~~~~~~l~ 212 (451)
....++.+|+++++.|.++...-+.. .++..+.. ..+| +++|.||+|+.+... .... .++...+.+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~ 143 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAVAKEEYRTQRFVP-IQQGKRVAK 143 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcccccccccCCcCC-HHHHHHHHH
Confidence 44567789999999998763322211 12333332 2567 789999999854210 0000 123344555
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.++. .+++++||++| .|++++++.+.+.+
T Consensus 144 ~~~~----~~~~e~Sa~~~----------~~v~~~f~~l~~~~ 172 (187)
T cd04129 144 EIGA----KKYMECSALTG----------EGVDDVFEAATRAA 172 (187)
T ss_pred HhCC----cEEEEccCCCC----------CCHHHHHHHHHHHH
Confidence 5543 57999999999 99999999997644
No 263
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=2.5e-14 Score=119.24 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=106.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++|.++|..|+|||+|+-++.....+.-.... -|+......+..+....++.||||+|+++|..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t--------------IGvDFkvk~m~vdg~~~KlaiWDTAGqErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT--------------IGVDFKVKVMQVDGKRLKLAIWDTAGQERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCce--------------eeeeEEEEEEEEcCceEEEEEEeccchHhhhc
Confidence 3589999999999999999998754322221111 14444455666666667889999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHHHc----CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQV----GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~~~----~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.+.++++.|.++|+|.|.+....-....+| ..+..+ ++-. ++|.||+|..+... . -+++-..+.+++.
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diik-mlVgNKiDkes~R~-V--~reEG~kfAr~h~--- 148 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIK-MLVGNKIDKESERV-V--DREEGLKFARKHR--- 148 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhH-hhhcccccchhccc-c--cHHHHHHHHHhhC---
Confidence 999999999999999999874433333333 223322 3332 47899999764221 1 1235556776654
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.-++++||++. ++++..++.|..
T Consensus 149 --~LFiE~SAkt~----------~~V~~~Feelve 171 (209)
T KOG0080|consen 149 --CLFIECSAKTR----------ENVQCCFEELVE 171 (209)
T ss_pred --cEEEEcchhhh----------ccHHHHHHHHHH
Confidence 45899999998 666655555544
No 264
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.57 E-value=6.9e-14 Score=130.28 Aligned_cols=81 Identities=22% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (451)
+|+++|.+|+|||||+++|++.....+. ..+.|.+.....+...+..+++|||||+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~----------------~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAA----------------YEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccC----------------CCCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 6899999999999999999965221111 113344443444555678899999999743
Q ss_pred -HHHHHHHhcccCCEEEEEEeCCC
Q 013007 141 -YVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 141 -~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
+...+...++.+|++++|+|+++
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATK 89 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCc
Confidence 34456677889999999999875
No 265
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.56 E-value=1.4e-14 Score=119.97 Aligned_cols=107 Identities=26% Similarity=0.321 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD------ 140 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~------ 140 (451)
+|+++|.+|+|||||+|+|++.. .. ......+.|.......+...+..+.|+||||..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~------~~---------~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK------LA---------KVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST------SS---------EESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc------cc---------cccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 58999999999999999999531 10 1111224555554445566788889999999422
Q ss_pred ---HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEee
Q 013007 141 ---YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190 (451)
Q Consensus 141 ---~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK 190 (451)
........+..+|++++|+|+.+....+..+.+..++ .+.| +++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 3445666678899999999988744444555666665 5666 7899998
No 266
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=4.6e-14 Score=129.01 Aligned_cols=170 Identities=16% Similarity=0.226 Sum_probs=115.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee-EEEeeeCCeeEEEEecCChHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA-HVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~-~~~~~~~~~~i~iiDtPG~~~ 140 (451)
+++..||.++|.+|+|||+|+|+|...... .... . |++.+.. .....++...++||||||.++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~---~v~~----v---------g~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVK---EVSK----V---------GVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCc---eeee----c---------ccCCCchhhHHhhccccceEEecCCCccc
Confidence 567899999999999999999999843110 0000 0 1111111 111123457799999999766
Q ss_pred -------HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCC-CeEEEEEeeccCCCh------------HHHH
Q 013007 141 -------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGV-PSLVCFLNKVDLVED------------EELL 200 (451)
Q Consensus 141 -------~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~i-p~iivviNK~D~~~~------------~~~~ 200 (451)
|.......+...|.+++++++.+.........+......+. .++++++|.+|+..+ +...
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 77778888899999999999999877777777776666555 558899999998643 1222
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc
Q 013007 201 ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (451)
Q Consensus 201 ~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~ 260 (451)
+.+.++...+-+.+. +--|++..|+..+ +|+.+|+.++...+|...+
T Consensus 180 qfi~~k~~~~~~~~q---~V~pV~~~~~r~~----------wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 180 QFIEEKAEALGRLFQ---EVKPVVAVSGRLP----------WGLKELVRALITALPVEAR 226 (296)
T ss_pred HHHHHHHHHHHHHHh---hcCCeEEeccccC----------ccHHHHHHHHHHhCccccc
Confidence 223333332222221 2468888887776 8999999999999885433
No 267
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.55 E-value=4.5e-14 Score=123.72 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=93.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
++|+++|+.|+|||||+.++....... ...+. .+. . ...+.+......+.+|||+|.++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~-----------~~~~~---~~~-~-~~~i~~~~~~~~l~i~D~~g~~~~---- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ-----------LESPE---GGR-F-KKEVLVDGQSHLLLIRDEGGAPDA---- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC-----------CCCCC---ccc-e-EEEEEECCEEEEEEEEECCCCCch----
Confidence 479999999999999999887431100 00000 011 0 111222222356889999999753
Q ss_pred HHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHH----cCCCeEEEEEeeccCCCh-HHHHHHHHHHHHHHHHhcCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVCFLNKVDLVED-EELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~----~~ip~iivviNK~D~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.....+|++++|+|.++...-+. ...+..+.. .++| +++|.||+|+... +.... .++.+++.+.. .
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~----~ 132 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIP-LILVGTQDAISESNPRVID--DARARQLCADM----K 132 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcCCcccC--HHHHHHHHHHh----C
Confidence 23467999999999988544333 333333332 2456 7899999998531 11111 12334444443 2
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++++||+++ .|++++++.+.+.
T Consensus 133 ~~~~~e~SAk~~----------~~i~~~f~~~~~~ 157 (158)
T cd04103 133 RCSYYETCATYG----------LNVERVFQEAAQK 157 (158)
T ss_pred CCcEEEEecCCC----------CCHHHHHHHHHhh
Confidence 368999999999 8999999988653
No 268
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=5.2e-14 Score=130.53 Aligned_cols=149 Identities=21% Similarity=0.278 Sum_probs=97.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChH----
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHA---- 139 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~---- 139 (451)
.-.|+++|-+|||||||+++|+......+...|. |+........+++ .++++-|.||..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFT----------------TL~P~iG~v~yddf~q~tVADiPGiI~GAh 259 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFT----------------TLRPHIGTVNYDDFSQITVADIPGIIEGAH 259 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCccccccee----------------eeccccceeeccccceeEeccCcccccccc
Confidence 3588999999999999999999876666665553 2222222222333 349999999932
Q ss_pred -------HHHHHHHHhcccCCEEEEEEeCCCCCC----ccHHHHHHHHHHc-----CCCeEEEEEeeccCCChHHHHHHH
Q 013007 140 -------DYVKNMITGAAQMDGGILVVSAPDGPM----PQTKEHILLARQV-----GVPSLVCFLNKVDLVEDEELLELV 203 (451)
Q Consensus 140 -------~~~~~~~~~~~~~d~~ilVvda~~g~~----~~t~~~l~~~~~~-----~ip~iivviNK~D~~~~~~~~~~~ 203 (451)
+|++.. ..++..++|||.+.+.. .|....+..+..+ ..| .++|.||+|+.+.++
T Consensus 260 ~nkGlG~~FLrHi----ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp-~liVaNKiD~~eae~----- 329 (366)
T KOG1489|consen 260 MNKGLGYKFLRHI----ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRP-ALIVANKIDLPEAEK----- 329 (366)
T ss_pred ccCcccHHHHHHH----HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCc-eEEEEeccCchhHHH-----
Confidence 255555 44999999999987622 2222222222222 345 558999999864222
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+.+.++.+.+. +..|+|+||+++ +++.+|++.|...
T Consensus 330 -~~l~~L~~~lq----~~~V~pvsA~~~----------egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 330 -NLLSSLAKRLQ----NPHVVPVSAKSG----------EGLEELLNGLREL 365 (366)
T ss_pred -HHHHHHHHHcC----CCcEEEeeeccc----------cchHHHHHHHhhc
Confidence 12345555543 235999999999 8999999988653
No 269
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.54 E-value=4.1e-14 Score=124.23 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=101.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
||+++|+.++|||||+++|.+....... ....|.........++.....+.+||++|+++|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENY--------------IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSS--------------ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccc--------------cccccccccccccccccccccccccccccccccccccc
Confidence 6999999999999999999854211100 00112222222333333345688999999999987777
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc-C-CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV-G-VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~-~-ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
..+..+|++++|.|.++... ......+..+... . -++++++.||.|+.+.... -.++..++.+.++ .++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v---~~~~~~~~~~~~~-----~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREV---SVEEAQEFAKELG-----VPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSS---CHHHHHHHHHHTT-----SEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc---hhhHHHHHHHHhC-----CEE
Confidence 77889999999999887322 2222233333322 2 2348899999998752211 1124556666653 689
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+.+||+++ .++.+++..+.+.
T Consensus 139 ~e~Sa~~~----------~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 139 FEVSAKNG----------ENVKEIFQELIRK 159 (162)
T ss_dssp EEEBTTTT----------TTHHHHHHHHHHH
T ss_pred EEEECCCC----------CCHHHHHHHHHHH
Confidence 99999998 8899988887654
No 270
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=1.4e-13 Score=125.56 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee--eCCeeEEEEecCChHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE--TAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~--~~~~~i~iiDtPG~~~~~~~ 144 (451)
+|+++|++|+|||||+++|....... . ...++......... ..+..+.+||||||.+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~------------t-----~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~ 64 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS------------T-----VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDK 64 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC------------c-----cCcEeecceEEEeecCCCCceEEEEECCCCHHHHHH
Confidence 79999999999999999998431100 0 00011111111121 23567999999999999888
Q ss_pred HHHhcccC-CEEEEEEeCCCCC--CccHHHHHHHH----HH--cCCCeEEEEEeeccCCC
Q 013007 145 MITGAAQM-DGGILVVSAPDGP--MPQTKEHILLA----RQ--VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 145 ~~~~~~~~-d~~ilVvda~~g~--~~~t~~~l~~~----~~--~~ip~iivviNK~D~~~ 195 (451)
....++.+ +++|+|+|+.+.. ...+.+.+..+ .. .++| ++++.||+|+..
T Consensus 65 ~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~~ 123 (203)
T cd04105 65 LLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLFT 123 (203)
T ss_pred HHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCC-EEEEecchhhcc
Confidence 88888888 9999999998752 12233333221 11 3677 779999999875
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=1.3e-13 Score=125.19 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (451)
++|+++|.+|+|||||+|+|++. ..+. ......+.|.......+...+..+++|||||..+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~------~~~~--------~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGR------EVFE--------SKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCC------Cccc--------cccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 48999999999999999999954 1111 00112356666555556667889999999995442
Q ss_pred ---HHHHHH----hcccCCEEEEEEeCCCCCCccHHHHHHHHHHc-C---CCeEEEEEeeccCCChHHH---HHHHHHHH
Q 013007 142 ---VKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-G---VPSLVCFLNKVDLVEDEEL---LELVEMEL 207 (451)
Q Consensus 142 ---~~~~~~----~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~-~---ip~iivviNK~D~~~~~~~---~~~~~~~~ 207 (451)
...+.. ....+|++++|+|+.+ +.....+.+..+... | .+++|+++|+.|....... +......+
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l 145 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEAL 145 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHH
Confidence 233332 2346899999999987 766777777666543 3 2457899999998764322 22222456
Q ss_pred HHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 208 RELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 208 ~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
+.+++.++- .++..+...- . ......+.+|++.+.+.++.
T Consensus 146 ~~l~~~c~~-----r~~~f~~~~~-~----~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 146 KRLLEKCGG-----RYVAFNNKAK-G----EEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhCC-----eEEEEeCCCC-c----chhHHHHHHHHHHHHHHHHh
Confidence 666666542 1222222210 0 01127899999999988764
No 272
>COG2262 HflX GTPases [General function prediction only]
Probab=99.53 E-value=4.8e-14 Score=135.91 Aligned_cols=154 Identities=23% Similarity=0.214 Sum_probs=104.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHH-
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHAD- 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~- 140 (451)
.....|+++|.+|||||||+|+|++...... |.. =.|.+.....+... +..+.+-||-|+-+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~----------d~L------FATLdpttR~~~l~~g~~vlLtDTVGFI~~ 253 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVA----------DQL------FATLDPTTRRIELGDGRKVLLTDTVGFIRD 253 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeecc----------ccc------cccccCceeEEEeCCCceEEEecCccCccc
Confidence 4568999999999999999999994411111 111 13444444444444 58899999999543
Q ss_pred -------HHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHH
Q 013007 141 -------YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRE 209 (451)
Q Consensus 141 -------~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~ 209 (451)
-.+.++.....+|.++.|||+++.. ..+.......+..+ .+| +|+|+||+|++.+.....
T Consensus 254 LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p-~i~v~NKiD~~~~~~~~~-------- 324 (411)
T COG2262 254 LPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIP-IILVLNKIDLLEDEEILA-------- 324 (411)
T ss_pred CChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCC-EEEEEecccccCchhhhh--------
Confidence 2455566678899999999999852 23333334445544 456 779999999987544111
Q ss_pred HHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 210 LLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 210 ~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.+... . .+.+++||++| .|++.|.+.|...++
T Consensus 325 ~~~~~-~----~~~v~iSA~~~----------~gl~~L~~~i~~~l~ 356 (411)
T COG2262 325 ELERG-S----PNPVFISAKTG----------EGLDLLRERIIELLS 356 (411)
T ss_pred hhhhc-C----CCeEEEEeccC----------cCHHHHHHHHHHHhh
Confidence 11111 1 14899999999 999999999988776
No 273
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=1.2e-13 Score=127.47 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=99.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|+.|+|||||++++......... ...-+..+.............+.+|||||+++|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY--------------IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC--------------CCccceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 445689999999999999999876532111000 000122221112222333467899999999998
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHH--HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLAR--QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~--~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
.......+..+|++++|+|.++...-+....+ ..+. ..++| ++++.||+|+.+..... +...+.+..
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~~~~-----~~~~~~~~~---- 141 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQVKA-----RQITFHRKK---- 141 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECccCccccCCH-----HHHHHHHHc----
Confidence 77777777889999999999875433322222 1111 13567 77899999986422111 112333433
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
...++++||+++ .++++.+..|...+.
T Consensus 142 -~~~~~e~Sa~~~----------~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 142 -NLQYYDISAKSN----------YNFEKPFLWLARRLT 168 (215)
T ss_pred -CCEEEEEeCCCC----------CCHHHHHHHHHHHHh
Confidence 256899999998 778887777765543
No 274
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.3e-14 Score=123.22 Aligned_cols=144 Identities=17% Similarity=0.124 Sum_probs=98.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE--EEeeeCCeeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH--VEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~~~~~~~~i~iiDtPG~~~ 140 (451)
...++|+++|.+++|||-|+.++++. ....+....+.++... ...+....+.+||||+|+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrn----------------EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRN----------------EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhccc----------------ccCcccccceeEEEEeeceeecCcEEEEeeecccchhh
Confidence 34589999999999999999999743 2222222233333333 33333345668999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|..-...+++.+-+|++|.|.+....- ...+.|..++.. +++ +++|.||+||..... .-.++.+.+.+..+
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~niv-imLvGNK~DL~~lra---V~te~~k~~Ae~~~- 150 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIV-IMLVGNKSDLNHLRA---VPTEDGKAFAEKEG- 150 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeE-EEEeecchhhhhccc---cchhhhHhHHHhcC-
Confidence 999888999999999999999874332 233344555543 577 778999999976221 12235556666543
Q ss_pred CCCCCCeeecccccc
Q 013007 217 PGDEIPIIRGSATSA 231 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g 231 (451)
..++.+||+.+
T Consensus 151 ----l~f~EtSAl~~ 161 (222)
T KOG0087|consen 151 ----LFFLETSALDA 161 (222)
T ss_pred ----ceEEEeccccc
Confidence 57999999887
No 275
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.51 E-value=1.7e-13 Score=108.32 Aligned_cols=93 Identities=27% Similarity=0.393 Sum_probs=81.9
Q ss_pred CCCCCeeEEEEEEEeeC--------CCceEEEEEEEeeeeecCCEEEEecccC--------CCCceeEEEEEeecceecc
Q 013007 261 QLDKPFLMPIEDVFSIQ--------GRGTVATGRVEQGTIKVGEEVEVLGLTQ--------GPSLKTTVTGVEMFKKILD 324 (451)
Q Consensus 261 ~~~~p~~~~v~~~~~~~--------~~G~v~~g~v~sG~l~~gd~v~i~p~~~--------~~~~~~~V~~I~~~~~~v~ 324 (451)
+.++|++|+|.++|.++ .+|.|+.|+|.+|.|++||++.|.|.-. +.++..+|.||+.++..++
T Consensus 1 d~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~ 80 (113)
T cd03688 1 DFTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQ 80 (113)
T ss_pred CCCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCcccc
Confidence 35789999999999998 7999999999999999999999997411 1246789999999999999
Q ss_pred EEecCCeEEE---EeccccccCCCCCeEEecC
Q 013007 325 RGEAGDNVGL---LLRGLKREDVQRGQVIAKP 353 (451)
Q Consensus 325 ~a~aG~~v~l---~l~~~~~~~i~~G~vl~~~ 353 (451)
+|.||+.+++ ..+++.+.|..+|+|++.+
T Consensus 81 ~a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 81 EAVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EEeCCCeEEEccccCccccccceeeEEEeecC
Confidence 9999999999 6678888999999999875
No 276
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.51 E-value=1.7e-13 Score=124.10 Aligned_cols=158 Identities=16% Similarity=0.055 Sum_probs=95.6
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHHHHHHhcCccceeeeeccCCchhhhhcCceE---Eee--E--------EEeeeCCeeE
Q 013007 65 HVNVGTIGHVDHGKTTLTA-AITKVLAEEGKAKAIAFDEIDKAPEEKKRGITI---ATA--H--------VEYETAKRHY 130 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~---~~~--~--------~~~~~~~~~i 130 (451)
.++|+++|..++|||||+. ++.+.....+. ...+. -.|+ +.. . ..++.....+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~-----------f~~~~--~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l 68 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQ-----------LLATH--VPTVWAIDQYRVCQEVLERSRDVVDGVSVSL 68 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCccccc-----------Ccccc--CCceecccceeEEeeeccccceeeCCEEEEE
Confidence 3699999999999999996 44422111010 00000 1111 000 0 0122234578
Q ss_pred EEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHH-H-HHHHHHH--cCCCeEEEEEeeccCCChH--H------
Q 013007 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTK-E-HILLARQ--VGVPSLVCFLNKVDLVEDE--E------ 198 (451)
Q Consensus 131 ~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~-~-~l~~~~~--~~ip~iivviNK~D~~~~~--~------ 198 (451)
.||||+|++++.. ..+++.+|++++|+|.++...-+.. . ++..+.. .++| +|+|.||+|+.+.. +
T Consensus 69 ~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 69 RLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP-VILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred EEEeCCCChhhhh--cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhccccccchhhhccc
Confidence 8999999986432 3367789999999999874332222 2 2233332 2567 78999999986410 0
Q ss_pred --------HHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 199 --------LLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 199 --------~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
....-.++.+++.+.++ .+++++||++| .|++++++.+.+
T Consensus 146 ~~~~~~~~~~~V~~~e~~~~a~~~~-----~~~~E~SAkt~----------~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILPPETGRAVAKELG-----IPYYETSVVTQ----------FGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccCHHHHHHHHHHhC-----CEEEEcCCCCC----------CCHHHHHHHHHH
Confidence 00111235566666654 47999999999 899999988865
No 277
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.50 E-value=4.2e-12 Score=121.11 Aligned_cols=150 Identities=18% Similarity=0.238 Sum_probs=94.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHHH-
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHADY- 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~~- 141 (451)
.++|+++|+.|+|||||+|+|.+........ ..+.......+.+++......++.++ .++++|||||..++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~------~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDY------PPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccC------CCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 5799999999999999999998542111100 00001111222333444444444444 46899999995442
Q ss_pred --------------------HHHHHHhcc-------cCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 142 --------------------VKNMITGAA-------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 142 --------------------~~~~~~~~~-------~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
+.+.....+ .+|+++++++++. ++.....+.+..+.. ++| +|+|+||+|+
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~ 155 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVN-IIPVIAKADT 155 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCC-EEEEEECCCc
Confidence 222221111 4788999999874 676777788887775 788 7799999999
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccc
Q 013007 194 VEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (451)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa 228 (451)
...++ ....++.+.+.++..+ +++++...
T Consensus 156 l~~~e-~~~~k~~i~~~l~~~~-----i~~~~~~~ 184 (276)
T cd01850 156 LTPEE-LKEFKQRIMEDIEEHN-----IKIYKFPE 184 (276)
T ss_pred CCHHH-HHHHHHHHHHHHHHcC-----CceECCCC
Confidence 87544 3456667778887754 46766543
No 278
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.50 E-value=2.8e-13 Score=113.66 Aligned_cols=155 Identities=23% Similarity=0.242 Sum_probs=103.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
...++|.++|.-||||||++++|.+.. ....+...|..+ ...+..+..+++||..|+..+.
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~---------------~~~i~pt~gf~I----ktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED---------------TDTISPTLGFQI----KTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC---------------ccccCCccceee----EEEEecceEEEEEEcCCcchhH
Confidence 347899999999999999999998541 111111112222 2345568899999999999998
Q ss_pred HHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHH----HHcCCCeEEEEEeeccCCCh--HHHHHHHHHHHHHHHHhcC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLA----RQVGVPSLVCFLNKVDLVED--EELLELVEMELRELLSFYK 215 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~----~~~~ip~iivviNK~D~~~~--~~~~~~~~~~~~~~l~~~~ 215 (451)
.-...++..+|+.|+|+|.++.. +.++..++..+ +..|.| ++++.||.|+... .+.+..+ -.++++++.
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~~l~~~~i~~~-~~L~~l~ks-- 150 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAP-LLVLANKQDLPGALSLEEISKA-LDLEELAKS-- 150 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCc-eEEEEecCcCccccCHHHHHHh-hCHHHhccc--
Confidence 88888999999999999997643 23333333322 345777 6789999999841 1111111 133444333
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
...+++-+||.+| +++.+-+++|..
T Consensus 151 ---~~~~l~~cs~~tg----------e~l~~gidWL~~ 175 (185)
T KOG0073|consen 151 ---HHWRLVKCSAVTG----------EDLLEGIDWLCD 175 (185)
T ss_pred ---cCceEEEEecccc----------ccHHHHHHHHHH
Confidence 3578999999998 555555555544
No 279
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.48 E-value=2.6e-13 Score=109.73 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=73.7
Q ss_pred cccEEEEEEEEeecCCCCcccccccCceeEEEEEeeeeeeeEEEe-----------CCccccCCCCEEEEEEEeCCeEee
Q 013007 358 TYKKFEAEIYVLTKDEGGRHTAFFSNYRPQIYLRTADVTGKVELL-----------GDVKMVMPGDNVNAAFELISPLPL 426 (451)
Q Consensus 358 ~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~~~~~~~~~i~~~-----------~~~~~l~~g~~~~v~~~~~~p~~~ 426 (451)
.+.+|+|+|.||+. .||.+||.+.+|+++.++.|+|..+ .++++|..||.+.|+|++.+|+|+
T Consensus 2 ~~~~f~a~i~~l~~------~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~~~~~~l~~n~~a~v~i~~~~pi~~ 75 (103)
T cd04095 2 VSDQFAATLVWMDE------EPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEHEAADTLELNDIGRVELSLSKPLAF 75 (103)
T ss_pred ccceeeEEEEEecC------cccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCccCCCEECCCCeEEEEEEeCCccEe
Confidence 46789999999994 4799999999999999999999765 257899999999999999999999
Q ss_pred ecC------CeEEE--eeCCcEEEEEEE
Q 013007 427 QQG------QRFAL--REGGRTVGAGVV 446 (451)
Q Consensus 427 ~~~------~rfvl--r~~~~tig~G~I 446 (451)
+++ |||+| |++|.|+|+|+|
T Consensus 76 d~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 76 DPYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred cchhhCCCcceEEEEECCCCcEEEEEeC
Confidence 975 89999 455999999986
No 280
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4.3e-13 Score=110.20 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
..++.++|+..+|||+|+-+..+........+ .-|+......++-.....++++|||.|++.|..-
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvs--------------TvGidFKvKTvyr~~kRiklQiwDTagqEryrti 86 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--------------TVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTI 86 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceee--------------eeeeeEEEeEeeecccEEEEEEEecccchhhhHH
Confidence 35999999999999999988764322111111 1133333332221112356899999999999988
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccHHHHH-HHH---HHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQTKEHI-LLA---RQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~---~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
+-.+++++++.||+.|.++...-...+.| .+. ...+.+ +|+|.||||+.++.- +. .+....+..++|+
T Consensus 87 TTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naq-vilvgnKCDmd~eRv-is--~e~g~~l~~~LGf---- 158 (193)
T KOG0093|consen 87 TTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDSERV-IS--HERGRQLADQLGF---- 158 (193)
T ss_pred HHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCce-EEEEecccCCcccee-ee--HHHHHHHHHHhCh----
Confidence 88899999999999999874322222211 222 234677 789999999975321 11 1355677888887
Q ss_pred CCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 221 IPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 221 ~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.+|+.||+.+ -++..+++.+..
T Consensus 159 -efFEtSaK~N----------inVk~~Fe~lv~ 180 (193)
T KOG0093|consen 159 -EFFETSAKEN----------INVKQVFERLVD 180 (193)
T ss_pred -HHhhhccccc----------ccHHHHHHHHHH
Confidence 4999999987 455555555544
No 281
>PRK13768 GTPase; Provisional
Probab=99.47 E-value=9e-13 Score=124.23 Aligned_cols=177 Identities=27% Similarity=0.322 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccC--C------------chhhh---hcCceEEeeEE-------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEID--K------------APEEK---KRGITIATAHV------- 121 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d--~------------~~~e~---~~g~t~~~~~~------- 121 (451)
..+++.|..|+||||++..+.......|+......-... . ...+. +.+.......+
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHHH
Confidence 478999999999999999998887777765443321100 0 00000 00100000000
Q ss_pred --------EeeeCCeeEEEEecCChHHHH------HHHHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHH-----HcC
Q 013007 122 --------EYETAKRHYAHVDCPGHADYV------KNMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLAR-----QVG 180 (451)
Q Consensus 122 --------~~~~~~~~i~iiDtPG~~~~~------~~~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~-----~~~ 180 (451)
.+...+..+.+|||||+.++. ....+.+.. ++++++|+|+..+....+.+....+. ..+
T Consensus 83 ~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~ 162 (253)
T PRK13768 83 TKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG 162 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 011123468999999976642 223333333 89999999998877666654444332 568
Q ss_pred CCeEEEEEeeccCCChHHHHHHHHHHHH------------------------HHHHhcCCCCCCCCeeeccccccccCCC
Q 013007 181 VPSLVCFLNKVDLVEDEELLELVEMELR------------------------ELLSFYKFPGDEIPIIRGSATSALQGKN 236 (451)
Q Consensus 181 ip~iivviNK~D~~~~~~~~~~~~~~~~------------------------~~l~~~~~~~~~~pvi~~Sa~~g~~~~~ 236 (451)
+| +++|+||+|+.+..+. +.+.+.+. +.++.++ ...+++++|++++
T Consensus 163 ~~-~i~v~nK~D~~~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~---~~~~vi~iSa~~~----- 232 (253)
T PRK13768 163 LP-QIPVLNKADLLSEEEL-ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETG---LPVRVIPVSAKTG----- 232 (253)
T ss_pred CC-EEEEEEhHhhcCchhH-HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHC---CCCcEEEEECCCC-----
Confidence 88 6689999999874332 11211111 2233333 2358999999988
Q ss_pred cccchhhHHHHHHHHHhhCCC
Q 013007 237 EEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 237 ~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.++++|+++|.+.++.
T Consensus 233 -----~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 233 -----EGFDELYAAIQEVFCG 248 (253)
T ss_pred -----cCHHHHHHHHHHHcCC
Confidence 8999999999998874
No 282
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=7.5e-13 Score=109.41 Aligned_cols=145 Identities=17% Similarity=0.200 Sum_probs=95.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.+++.++|+.|.|||.|+.++.....++.....+ |+......+.......+++||||+|+++|..-
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi--------------GveFgSrIinVGgK~vKLQIWDTAGQErFRSV 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI--------------GVEFGSRIVNVGGKTVKLQIWDTAGQERFRSV 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhccccccee--------------eeeecceeeeecCcEEEEEEeecccHHHHHHH
Confidence 4799999999999999999998654332221111 22222223333334467899999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCCccH-HHHHHHHHHcCCCe--EEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQVGVPS--LVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEI 221 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~~~t-~~~l~~~~~~~ip~--iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 221 (451)
+..+++.|.+++||.|++....-.. ...+.-++.+.-|. +|++.||-|+.++.+. .-.+..++..+ ...
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V---tflEAs~FaqE-----nel 146 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREV---TFLEASRFAQE-----NEL 146 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhh---hHHHHHhhhcc-----cce
Confidence 9999999999999999987433222 22333444443332 5677899999764332 11133344332 235
Q ss_pred Ceeecccccc
Q 013007 222 PIIRGSATSA 231 (451)
Q Consensus 222 pvi~~Sa~~g 231 (451)
.+..+||++|
T Consensus 147 ~flETSa~TG 156 (214)
T KOG0086|consen 147 MFLETSALTG 156 (214)
T ss_pred eeeeeccccc
Confidence 6889999998
No 283
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.46 E-value=2.4e-12 Score=117.01 Aligned_cols=115 Identities=22% Similarity=0.207 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-----eCCeeEEEEecCChHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-----TAKRHYAHVDCPGHAD 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-----~~~~~i~iiDtPG~~~ 140 (451)
++|+++|..++|||||++++.......... ..-|.++......+. .....+.||||+|+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~--------------~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~ 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPS--------------WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------------cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh
Confidence 489999999999999999998432111000 000222222222232 1235688999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHHH----------------------cCCCeEEEEEeeccCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLARQ----------------------VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~~----------------------~~ip~iivviNK~D~~~ 195 (451)
|.......++.+|++|+|+|.++...-+....| ..+.. .++| +++|.||+|+.+
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P-iilVGnK~Dl~~ 143 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP-LLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce-EEEEEECccchh
Confidence 988888889999999999999885433222222 22222 2467 889999999975
No 284
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.9e-13 Score=132.46 Aligned_cols=162 Identities=18% Similarity=0.180 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH--
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (451)
+.-++|+++|.+|+|||||+|+|.+. |..-.....|.|.+.-...++.++..+.++||+|..+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~---------------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~ 330 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSRE---------------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREES 330 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcC---------------CceEeCCCCCcchhhheeEeecCCeEEEEEecccccccc
Confidence 34589999999999999999999854 3333445569999998888889999999999999655
Q ss_pred -------HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC-----------CCeEEEEEeeccCCCh-HHHHH
Q 013007 141 -------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----------VPSLVCFLNKVDLVED-EELLE 201 (451)
Q Consensus 141 -------~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~-----------ip~iivviNK~D~~~~-~~~~~ 201 (451)
-+......+..+|++++|+||..+++.+.....+.+...+ ..+++++.||+|+..+ .+.
T Consensus 331 ~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-- 408 (531)
T KOG1191|consen 331 NDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-- 408 (531)
T ss_pred CChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc--
Confidence 1333445567899999999999888888777777666543 2447788999998763 111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCee-eccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 202 LVEMELRELLSFYKFPGDEIPII-RGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~pvi-~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
......+....+. ...|+. .+|++++ +|+.+|.++|.+.+
T Consensus 409 --~~~~~~~~~~~~~--~~~~i~~~vs~~tk----------eg~~~L~~all~~~ 449 (531)
T KOG1191|consen 409 --TKIPVVYPSAEGR--SVFPIVVEVSCTTK----------EGCERLSTALLNIV 449 (531)
T ss_pred --cCCceeccccccC--cccceEEEeeechh----------hhHHHHHHHHHHHH
Confidence 1111111111111 234444 4888887 89999888887654
No 285
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.42 E-value=3.3e-12 Score=120.14 Aligned_cols=155 Identities=19% Similarity=0.203 Sum_probs=98.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH------ 138 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~------ 138 (451)
.-.|+++|-+|+|||||+++++......+...|.. ....+..+.. .....+++-|.||.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTT--------------L~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~ 223 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTT--------------LVPNLGVVRV-DGGESFVVADIPGLIEGASE 223 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCcccc--------------ccCcccEEEe-cCCCcEEEecCccccccccc
Confidence 34789999999999999999997766555544421 1122233333 34567999999994
Q ss_pred -----HHHHHHHHHhcccCCEEEEEEeCCCCCC----ccHHHHHHHHH-----HcCCCeEEEEEeeccCCChHHHHHHHH
Q 013007 139 -----ADYVKNMITGAAQMDGGILVVSAPDGPM----PQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVE 204 (451)
Q Consensus 139 -----~~~~~~~~~~~~~~d~~ilVvda~~g~~----~~t~~~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~~~ 204 (451)
.+|++...+ +.+.+.|||.+.... .+-......+. ..+.|. ++|+||||+..+++.++.++
T Consensus 224 G~GLG~~FLrHIER----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~-ivv~NKiD~~~~~e~~~~~~ 298 (369)
T COG0536 224 GVGLGLRFLRHIER----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPR-IVVLNKIDLPLDEEELEELK 298 (369)
T ss_pred CCCccHHHHHHHHh----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCce-EEEEeccCCCcCHHHHHHHH
Confidence 347766655 889999999985332 11122222222 236774 58999999776666555444
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+.+ .+..++ .+.+++||.++ .|+++|+..+.+.+.
T Consensus 299 ~~l---~~~~~~----~~~~~ISa~t~----------~g~~~L~~~~~~~l~ 333 (369)
T COG0536 299 KAL---AEALGW----EVFYLISALTR----------EGLDELLRALAELLE 333 (369)
T ss_pred HHH---HHhcCC----Ccceeeehhcc----------cCHHHHHHHHHHHHH
Confidence 332 233332 22333999998 788888887776654
No 286
>PLN00023 GTP-binding protein; Provisional
Probab=99.42 E-value=1.4e-12 Score=124.47 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=88.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeee-------------CCeeE
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYET-------------AKRHY 130 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~-------------~~~~i 130 (451)
..++|+++|+.++|||||+++|.+....... ...-|.+.....+.+.. ....+
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~--------------~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~L 85 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARP--------------PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFV 85 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCccccc--------------CCceeeeEEEEEEEECCcccccccccccCCceEEE
Confidence 3579999999999999999999854211100 00112222222233321 13458
Q ss_pred EEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCc-cHHHHHHHHHHc---------------CCCeEEEEEeeccCC
Q 013007 131 AHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQV---------------GVPSLVCFLNKVDLV 194 (451)
Q Consensus 131 ~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~---------------~ip~iivviNK~D~~ 194 (451)
.||||+|+++|.......++.+|++|+|+|.++.... .....+..+... ++| +|+|.||+|+.
T Consensus 86 qIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ip-IILVGNK~DL~ 164 (334)
T PLN00023 86 ELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVP-YIVIGNKADIA 164 (334)
T ss_pred EEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCc-EEEEEECcccc
Confidence 9999999999988888889999999999999873222 222233333322 356 78999999997
Q ss_pred ChHH---HHHHHHHHHHHHHHhcCCC
Q 013007 195 EDEE---LLELVEMELRELLSFYKFP 217 (451)
Q Consensus 195 ~~~~---~~~~~~~~~~~~l~~~~~~ 217 (451)
+... ......++.+++.+..++-
T Consensus 165 ~~~~~r~~s~~~~e~a~~~A~~~g~l 190 (334)
T PLN00023 165 PKEGTRGSSGNLVDAARQWVEKQGLL 190 (334)
T ss_pred ccccccccccccHHHHHHHHHHcCCC
Confidence 5321 1011345677788877763
No 287
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.41 E-value=4.4e-12 Score=122.84 Aligned_cols=176 Identities=21% Similarity=0.198 Sum_probs=104.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc-----------CCchhh---hhcCceEEee--EE----
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-----------DKAPEE---KKRGITIATA--HV---- 121 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-----------d~~~~e---~~~g~t~~~~--~~---- 121 (451)
......|++.|.+|+|||||++.|...+...|.......-.. |....+ ...+.-+... ..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 445679999999999999999999888776665443332111 100111 1111111110 00
Q ss_pred ----------EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 122 ----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 122 ----------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
.++..+..+.|+||+|...-... ....+|.+++|++...|..-|... ...+.+.. ++|+||+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~aD-IiVVNKa 204 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK----KGIMELAD-LIVINKA 204 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH----hhhhhhhh-eEEeehh
Confidence 01234678999999996632211 345699999998744443332211 01122222 4799999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcC--CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 192 DLVEDEELLELVEMELRELLSFYK--FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
|+.+... .+....+++..+.... ...+..|++++||+++ .|+++|++.|.++++
T Consensus 205 Dl~~~~~-a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g----------~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 205 DGDNKTA-ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEG----------EGIDEIWQAIEDHRA 260 (332)
T ss_pred cccchhH-HHHHHHHHHHHHhcccccccCCCCCEEEEECCCC----------CCHHHHHHHHHHHHH
Confidence 9986433 2333344555444321 1124579999999998 899999999988765
No 288
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=1.6e-12 Score=106.89 Aligned_cols=143 Identities=19% Similarity=0.174 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
.+..++|.+++|||+|+-++...... +..+. .-|+......+..+....++.||||+|++.|...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs---~sYit-----------TiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS---GSYIT-----------TIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc---cceEE-----------EeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence 46789999999999999887633111 11110 00333333444455555678999999999999999
Q ss_pred HHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 146 ITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
..+.+..+++++|.|.+++.. ...+..|..++.. .+|.+ +|.||.|..+.... ..++.+.+....+ +.
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~v-LVGNK~d~~~RrvV---~t~dAr~~A~~mg-----ie 145 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKV-LVGNKNDDPERRVV---DTEDARAFALQMG-----IE 145 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccce-ecccCCCCccceee---ehHHHHHHHHhcC-----ch
Confidence 999999999999999998654 5556666666544 46754 89999998753221 2235556665544 56
Q ss_pred eeecccccc
Q 013007 223 IIRGSATSA 231 (451)
Q Consensus 223 vi~~Sa~~g 231 (451)
.|++||+..
T Consensus 146 ~FETSaKe~ 154 (198)
T KOG0079|consen 146 LFETSAKEN 154 (198)
T ss_pred heehhhhhc
Confidence 899999987
No 289
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.39 E-value=1.1e-12 Score=107.83 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..+.+.++|--++|||||+|.+.... .. +.-+.|+......+......+.+||.||+..|..
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~---------------~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrs 80 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQ---------------YL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRS 80 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeecc---------------ch---hhhcccccceeEEeccCceEEEEEecCCCccHHH
Confidence 45789999999999999999875320 00 0113344344445555667789999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCC-CccHHHHHH-H---HHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC--
Q 013007 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHIL-L---ARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF-- 216 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~-~---~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~-- 216 (451)
...++.+.+|++++||||.+.. ....++.+. + ....++| ++|..||.|+.+.-.. .++.+++|+
T Consensus 81 mWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL~~--------~~li~rmgL~s 151 (186)
T KOG0075|consen 81 MWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGALSK--------IALIERMGLSS 151 (186)
T ss_pred HHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCc-EEEecccccCcccccH--------HHHHHHhCccc
Confidence 9999999999999999998732 122333332 2 2345889 6689999999763211 123333333
Q ss_pred -CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 217 -PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 217 -~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
...++-.+.+|++.. .+++..+++|.++-
T Consensus 152 itdREvcC~siScke~----------~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 152 ITDREVCCFSISCKEK----------VNIDITLDWLIEHS 181 (186)
T ss_pred cccceEEEEEEEEcCC----------ccHHHHHHHHHHHh
Confidence 234566788999876 78999999998753
No 290
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.38 E-value=7.6e-14 Score=136.26 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=128.3
Q ss_pred cccccCCcccchhccCcccccccccccccccccCCCCCCccccchhhhccC-cceeEEEEEcCCCCcHHHHHHHHHHHHH
Q 013007 12 KRIVPFSSQIYSCCRGSLSISDAFSANETSATRCGPSVNPWWRSMATFTRT-KLHVNVGTIGHVDHGKTTLTAAITKVLA 90 (451)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~viG~~~~GKSTLi~~L~~~~~ 90 (451)
-+|+.+..++|+|++........+.+-.....++..+....++.+.+++.. .+.+++.++|.+|+|||+|++.++.+..
T Consensus 114 vrLlk~~dSlyrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv 193 (620)
T KOG1490|consen 114 VRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD 193 (620)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc
Confidence 368899999999999888877777777777777787888888888777764 3468999999999999999999986644
Q ss_pred hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH------HHHH--HHhccc-CCEEEEEEeC
Q 013007 91 EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY------VKNM--ITGAAQ-MDGGILVVSA 161 (451)
Q Consensus 91 ~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~------~~~~--~~~~~~-~d~~ilVvda 161 (451)
+.....|. |-..-..++.+.-.+|+++||||..|- .-+| +.+++. -.++++++|.
T Consensus 194 evqpYaFT----------------TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDL 257 (620)
T KOG1490|consen 194 EVQPYAFT----------------TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDL 257 (620)
T ss_pred ccCCcccc----------------cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeec
Confidence 43332221 111222234445567899999995441 2222 233333 2467889998
Q ss_pred CCCCCccHHHHHHHHH----H-cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecccccc
Q 013007 162 PDGPMPQTKEHILLAR----Q-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 162 ~~g~~~~t~~~l~~~~----~-~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
++-......+.+.+.. . .+.| +|+|+||+|....++..++-+ ++.+.++.- .+++++..|..+.
T Consensus 258 Se~CGySva~QvkLfhsIKpLFaNK~-~IlvlNK~D~m~~edL~~~~~-~ll~~~~~~----~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 258 SEMCGYSVAAQVKLYHSIKPLFANKV-TILVLNKIDAMRPEDLDQKNQ-ELLQTIIDD----GNVKVVQTSCVQE 326 (620)
T ss_pred hhhhCCCHHHHHHHHHHhHHHhcCCc-eEEEeecccccCccccCHHHH-HHHHHHHhc----cCceEEEecccch
Confidence 8633222223332222 2 2556 779999999987555433222 222223222 3488999998765
No 291
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.38 E-value=1.1e-11 Score=114.52 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe-eEEEeeeC-CeeEEEEecCChHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT-AHVEYETA-KRHYAHVDCPGHADYV 142 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~-~~~~~~~~-~~~i~iiDtPG~~~~~ 142 (451)
.++|+++|..|+|||||+++|.+.....++.. .+.... +....... ...+.+|||+|+++|.
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~ 68 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP----------------TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR 68 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCC----------------ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH
Confidence 37999999999999999999986533322211 111111 11111111 3558899999999999
Q ss_pred HHHHHhcccCCEEEEEEeCCC--CCCccHHHHHHHHHHc---CCCeEEEEEeeccCCChH
Q 013007 143 KNMITGAAQMDGGILVVSAPD--GPMPQTKEHILLARQV---GVPSLVCFLNKVDLVEDE 197 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~--g~~~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~ 197 (451)
..+..+...++++++++|... ....-+.+....+... +.| ++++.||+|+....
T Consensus 69 ~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 69 SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 999999999999999999986 2333344444455544 366 88999999998743
No 292
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.37 E-value=7.2e-13 Score=110.06 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=70.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
+|+++|+.|+|||||+++|.+.... +........+.++.............+.+||++|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc------------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 6899999999999999999865222 0011111123344333333444445589999999988776544
Q ss_pred HhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHH-----cCCCeEEEEEeecc
Q 013007 147 TGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ-----VGVPSLVCFLNKVD 192 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~-----~~ip~iivviNK~D 192 (451)
..+..+|++++|+|.++... .+..+.+..+.. .++| +|+|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 44788999999999987331 222222222222 2477 789999998
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=5.8e-12 Score=122.78 Aligned_cols=170 Identities=20% Similarity=0.213 Sum_probs=98.4
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCCh---
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGH--- 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~--- 138 (451)
...++|+|+|.+|+|||||+|+|.+.-.+. .+.+..... .+|..... |.... ..+++||.||.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d-~~aA~tGv~----------etT~~~~~--Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHED-EGAAPTGVV----------ETTMEPTP--YPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTS-TTS--SSSH----------SCCTS-EE--EE-SS-TTEEEEEE--GGGS
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCC-cCcCCCCCC----------cCCCCCee--CCCCCCCCCeEEeCCCCCCC
Confidence 346899999999999999999997542221 111110000 12222222 22222 46999999994
Q ss_pred ----HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC------------ChHHHHHH
Q 013007 139 ----ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV------------EDEELLEL 202 (451)
Q Consensus 139 ----~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~------------~~~~~~~~ 202 (451)
.+|+..+ .+...|..|++.+. .........+..+..++.| +++|-||+|.. +.++.++.
T Consensus 100 ~f~~~~Yl~~~--~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~-fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~ 174 (376)
T PF05049_consen 100 NFPPEEYLKEV--KFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKK-FYFVRTKVDSDLYNERRRKPRTFNEEKLLQE 174 (376)
T ss_dssp S--HHHHHHHT--TGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-E-EEEEE--HHHHHHHHHCC-STT--HHTHHHH
T ss_pred CCCHHHHHHHc--cccccCEEEEEeCC--CCchhhHHHHHHHHHcCCc-EEEEEecccccHhhhhccCCcccCHHHHHHH
Confidence 3355544 46778987776653 3445555666777888988 78999999961 12345667
Q ss_pred HHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc
Q 013007 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (451)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~ 260 (451)
+++.+.+-|++.+. ...+||.+|...- ..+.++.|.+.|...+|...+
T Consensus 175 IR~~c~~~L~k~gv--~~P~VFLVS~~dl--------~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 175 IRENCLENLQKAGV--SEPQVFLVSSFDL--------SKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHHHHHHCTT---SS--EEEB-TTTT--------TSTTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHHHHcCC--CcCceEEEeCCCc--------ccCChHHHHHHHHHHhHHHHH
Confidence 77777777777666 4578999998642 237788999999888886544
No 294
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.35 E-value=4.3e-12 Score=111.84 Aligned_cols=124 Identities=21% Similarity=0.317 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee---eCCeeEEEEecCChHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE---TAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~---~~~~~i~iiDtPG~~~~~ 142 (451)
..|.++|+.|+|||+|+..|..... ... -.++ .....+. ..+..+.++|+|||.++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~-----~~T--------------~tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr 63 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT-----VPT--------------VTSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLR 63 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS--------B-----------------S-SEEEECCGSSTCGTCECEEEETT-HCCC
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc-----CCe--------------eccc-cCCceEEeecCCCCEEEEEECCCcHHHH
Confidence 4899999999999999999985410 000 0111 1111121 134679999999999987
Q ss_pred HHHHHh---cccCCEEEEEEeCCCCCCc---cHHHHHHHHH---H--cCCCeEEEEEeeccCCCh---HHHHHHHHHHHH
Q 013007 143 KNMITG---AAQMDGGILVVSAPDGPMP---QTKEHILLAR---Q--VGVPSLVCFLNKVDLVED---EELLELVEMELR 208 (451)
Q Consensus 143 ~~~~~~---~~~~d~~ilVvda~~g~~~---~t~~~l~~~~---~--~~ip~iivviNK~D~~~~---~~~~~~~~~~~~ 208 (451)
...... +..+.++|||||+.. ... ++.++|.-+. . .+.++++++.||.|+... ....+.++.++.
T Consensus 64 ~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei~ 142 (181)
T PF09439_consen 64 SKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEID 142 (181)
T ss_dssp HHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHHH
T ss_pred HHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHHH
Confidence 666665 778999999999974 222 2223222111 1 134448899999999862 223334444444
Q ss_pred HH
Q 013007 209 EL 210 (451)
Q Consensus 209 ~~ 210 (451)
.+
T Consensus 143 ~l 144 (181)
T PF09439_consen 143 KL 144 (181)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 295
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.35 E-value=5.3e-12 Score=101.24 Aligned_cols=138 Identities=24% Similarity=0.274 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC----hHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG----HADYV 142 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG----~~~~~ 142 (451)
+++++|.+|+|||||++.|.+...-.. .| ..+.| .++ -.||||| |..+.
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--------------------KT---QAve~--~d~--~~IDTPGEy~~~~~~Y 55 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--------------------KT---QAVEF--NDK--GDIDTPGEYFEHPRWY 55 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--------------------cc---ceeec--cCc--cccCCchhhhhhhHHH
Confidence 799999999999999999985421110 11 11112 111 3699999 67777
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIP 222 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p 222 (451)
...+.....+|++++|-.++++...-. ..++.-...| +|-+++|.|+.++++ ++ ..+++|.+.|. -|
T Consensus 56 ~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~-vIgvVTK~DLaed~d-I~----~~~~~L~eaGa----~~ 122 (148)
T COG4917 56 HALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKK-VIGVVTKADLAEDAD-IS----LVKRWLREAGA----EP 122 (148)
T ss_pred HHHHHHhhccceeeeeecccCccccCC---cccccccccc-eEEEEecccccchHh-HH----HHHHHHHHcCC----cc
Confidence 777777889999999999998654322 2223334445 778999999997443 22 44566777664 58
Q ss_pred eeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 223 IIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 223 vi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
||.+|+... .|+++|+++|...
T Consensus 123 IF~~s~~d~----------~gv~~l~~~L~~~ 144 (148)
T COG4917 123 IFETSAVDN----------QGVEELVDYLASL 144 (148)
T ss_pred eEEEeccCc----------ccHHHHHHHHHhh
Confidence 999999887 8999999998763
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.34 E-value=7.8e-12 Score=116.38 Aligned_cols=169 Identities=21% Similarity=0.315 Sum_probs=86.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE-E--------------------------E
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH-V--------------------------E 122 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~-~--------------------------~ 122 (451)
|+|++||||||++.++.+.....|+.....+ +|...++......++... + .
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vN--LDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~ 78 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVN--LDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEEN 78 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE----TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEE--cchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHH
Confidence 6899999999999999988877776655442 333222222212221100 0 0
Q ss_pred ee-------eCCeeEEEEecCChHHHH------HHHHHhccc--CCEEEEEEeCCCCCCccH-----HHHHHHHHHcCCC
Q 013007 123 YE-------TAKRHYAHVDCPGHADYV------KNMITGAAQ--MDGGILVVSAPDGPMPQT-----KEHILLARQVGVP 182 (451)
Q Consensus 123 ~~-------~~~~~i~iiDtPG~~~~~------~~~~~~~~~--~d~~ilVvda~~g~~~~t-----~~~l~~~~~~~ip 182 (451)
++ .....+.++||||+.++. ......+.. .=++++++|+..-..+.. ...+.....+++|
T Consensus 79 ~d~l~~~i~~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP 158 (238)
T PF03029_consen 79 IDWLDEEIEKYEDDYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELP 158 (238)
T ss_dssp HHHHHHHHHHHH-SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHhhcCCcEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCC
Confidence 00 012379999999988753 333444443 447888999875433222 1122233457999
Q ss_pred eEEEEEeeccCCChH--HHH-----------------HHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhh
Q 013007 183 SLVCFLNKVDLVEDE--ELL-----------------ELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKA 243 (451)
Q Consensus 183 ~iivviNK~D~~~~~--~~~-----------------~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~ 243 (451)
+ |.|+||+|+.++. ... ..+.+++.++++.++. ..+++|+|+.++ ++
T Consensus 159 ~-vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~f~pls~~~~----------~~ 224 (238)
T PF03029_consen 159 H-VNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL---VIRFIPLSSKDG----------EG 224 (238)
T ss_dssp E-EEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS---S---EE-BTTTT----------TT
T ss_pred E-EEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC---CceEEEEECCCh----------HH
Confidence 5 5899999999721 111 1122233333333332 228999999988 89
Q ss_pred HHHHHHHHHhh
Q 013007 244 ILKLMDAVDEY 254 (451)
Q Consensus 244 i~~Ll~~l~~~ 254 (451)
+.+|+..+.+.
T Consensus 225 ~~~L~~~id~a 235 (238)
T PF03029_consen 225 MEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888764
No 297
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.34 E-value=8.9e-12 Score=116.34 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=64.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH--
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD-- 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~-- 140 (451)
...-.++++|.+++|||||+++|++...+.+...|. |...-...+++.+.+++++|+||.-.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FT----------------Tl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFT----------------TLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCce----------------ecccccceEeecCceEEEEcCcccccCc
Confidence 345699999999999999999999876665554432 22233333677899999999999433
Q ss_pred -----HHHHHHHhcccCCEEEEEEeCCCC
Q 013007 141 -----YVKNMITGAAQMDGGILVVSAPDG 164 (451)
Q Consensus 141 -----~~~~~~~~~~~~d~~ilVvda~~g 164 (451)
--+..+..++.||.+++|+|+...
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 124566778899999999999753
No 298
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.31 E-value=7.8e-11 Score=108.51 Aligned_cols=160 Identities=17% Similarity=0.258 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-eCCeeEEEEecCChHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-TAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~~~~~i~iiDtPG~~~~~~~~ 145 (451)
||.++|..++||||+.+.+.+.... .+...-|.|++.....+. .+...+++||+||+.+|....
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p---------------~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP---------------RDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G---------------GGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc---------------hhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 6899999999999999999854211 111222566666555554 345689999999998876653
Q ss_pred -----HHhcccCCEEEEEEeCCCCCCccHHHHH----HHHHHc--CCCeEEEEEeeccCCChHH---HHHHHHHHHHHHH
Q 013007 146 -----ITGAAQMDGGILVVSAPDGPMPQTKEHI----LLARQV--GVPSLVCFLNKVDLVEDEE---LLELVEMELRELL 211 (451)
Q Consensus 146 -----~~~~~~~d~~ilVvda~~g~~~~t~~~l----~~~~~~--~ip~iivviNK~D~~~~~~---~~~~~~~~~~~~l 211 (451)
..-++.++++|+|+|+...........+ ..+... +++ +-|++.|||+..++. .++.+++.+.+.+
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIK-VFVFIHKMDLLSEDEREEIFRDIQQRIRDEL 144 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-E-EEEEEE-CCCS-HHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCe-EEEEEeecccCCHHHHHHHHHHHHHHHHHHh
Confidence 4456789999999999844333332222 233332 455 668999999987443 4445556666666
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
...+. +.+.++.+|-.. +.+.+....+.+.+
T Consensus 145 ~~~~~--~~~~~~~TSI~D-----------~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 145 EDLGI--EDITFFLTSIWD-----------ESLYEAWSKIVQKL 175 (232)
T ss_dssp HHTT---TSEEEEEE-TTS-----------THHHHHHHHHHHTT
T ss_pred hhccc--cceEEEeccCcC-----------cHHHHHHHHHHHHH
Confidence 66554 256788888754 45655555555444
No 299
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=2.7e-12 Score=106.86 Aligned_cols=145 Identities=19% Similarity=0.219 Sum_probs=95.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC---------CeeEEEEec
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---------KRHYAHVDC 135 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------~~~i~iiDt 135 (451)
.+++..+|..|+|||+++-+.+..... ..++... |+......+.+... ...+.+|||
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIsTV-----------GIDFreKrvvY~s~gp~g~gr~~rihLQlWDT 74 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFN---TQFISTV-----------GIDFREKRVVYNSSGPGGGGRGQRIHLQLWDT 74 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCccc---ceeEEEe-----------ecccccceEEEeccCCCCCCcceEEEEeeecc
Confidence 357788999999999998776632111 1111100 22221122222111 235789999
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCC-CCccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHH
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g-~~~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l 211 (451)
+|+++|...+-...+.|-+.+++.|.++. .+-.++..+..++.. .-|.+|++.||+|+.+.... -+++..++.
T Consensus 75 AGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V---s~~qa~~La 151 (219)
T KOG0081|consen 75 AGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV---SEDQAAALA 151 (219)
T ss_pred ccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh---hHHHHHHHH
Confidence 99999999998889999999999998762 223334444444432 45779999999999753322 234677788
Q ss_pred HhcCCCCCCCCeeecccccc
Q 013007 212 SFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g 231 (451)
++++ +|+|++||-+|
T Consensus 152 ~kyg-----lPYfETSA~tg 166 (219)
T KOG0081|consen 152 DKYG-----LPYFETSACTG 166 (219)
T ss_pred HHhC-----CCeeeeccccC
Confidence 8886 48999999887
No 300
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.31 E-value=6e-13 Score=107.46 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=89.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhc
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 149 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~ 149 (451)
++|.++.|||.|+-++-....-.|..... -|+......+.......++++|||+|+++|..-+..++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fist-------------vgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFIST-------------VGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeee-------------eeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhh
Confidence 58999999999875543221111111000 02222222333333446789999999999999999999
Q ss_pred ccCCEEEEEEeCCCCCC-ccHHHHHHHHHHc---CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 150 AQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 150 ~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~---~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
+.+|+.+++.|..+.-. ...+..+...... .+. +.++.||+|+..+... . .++-+.+.+.++ +|++.
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v~-l~llgnk~d~a~er~v-~--~ddg~kla~~y~-----ipfme 139 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVA-LMLLGNKCDLAHERAV-K--RDDGEKLAEAYG-----IPFME 139 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHh-Hhhhccccccchhhcc-c--cchHHHHHHHHC-----CCcee
Confidence 99999999999876433 3333344333332 234 5578999999753211 1 134556777765 58999
Q ss_pred ccccccc
Q 013007 226 GSATSAL 232 (451)
Q Consensus 226 ~Sa~~g~ 232 (451)
+||++|.
T Consensus 140 tsaktg~ 146 (192)
T KOG0083|consen 140 TSAKTGF 146 (192)
T ss_pred ccccccc
Confidence 9999993
No 301
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.30 E-value=5.6e-12 Score=104.94 Aligned_cols=159 Identities=17% Similarity=0.158 Sum_probs=102.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
-.++++++|..-+|||+|+-+..........-... . -+.....+.++.....+.||||+|+++|-.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl--------Q------ASF~~kk~n~ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL--------Q------ASFQNKKVNVEDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH--------H------HHHhhcccccccceeeeeeeeccchHhhhc
Confidence 35799999999999999998776331110000000 0 000011112222234678999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHH-HHHH---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHI-LLAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l-~~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
.-.-+++.+|+++||.|.++...-|-...| ..++ ...+. +++|.||+|+.++.. ...++...+.+..|.
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~-l~IVGNKiDLEeeR~---Vt~qeAe~YAesvGA--- 150 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIE-LLIVGNKIDLEEERQ---VTRQEAEAYAESVGA--- 150 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeE-EEEecCcccHHHhhh---hhHHHHHHHHHhhch---
Confidence 888889999999999999985443332222 2233 22355 678999999964222 123355566666553
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.++.+||+.+ .|+.+|++.|...+
T Consensus 151 --~y~eTSAk~N----------~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 151 --LYMETSAKDN----------VGISELFESLTAKM 174 (218)
T ss_pred --hheecccccc----------cCHHHHHHHHHHHH
Confidence 5899999988 89999998886643
No 302
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.30 E-value=5.6e-11 Score=115.08 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=51.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE---------------EEee-eCCeeEE
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH---------------VEYE-TAKRHYA 131 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~---------------~~~~-~~~~~i~ 131 (451)
|+++|.+++|||||+++|++.....+...+ ...+...|+..-... ..+. .....+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pf--------tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPF--------TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCC--------ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 589999999999999999965322221111 000111111110000 0000 1234689
Q ss_pred EEecCCh----HHH---HHHHHHhcccCCEEEEEEeCCC
Q 013007 132 HVDCPGH----ADY---VKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 132 iiDtPG~----~~~---~~~~~~~~~~~d~~ilVvda~~ 163 (451)
+|||||. .++ ....+..++.||++++|+|+..
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999996 333 2345567889999999999973
No 303
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=8.4e-11 Score=95.99 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=96.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCCeeEEEEecCChHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++-.++|..|+|||.|+..++....-. ...+.+.+... .+.......++.+|||.|+++|
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfma----------------dcphtigvefgtriievsgqkiklqiwdtagqerf 73 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA----------------DCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 73 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhh----------------cCCcccceecceeEEEecCcEEEEEEeecccHHHH
Confidence 45788999999999999999998542211 11112222222 3333344567899999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHHHH----HHHHHcCCC--eEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKEHI----LLARQVGVP--SLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l----~~~~~~~ip--~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
..-+.++++.+.++++|.|.+... |..|+ .-++.+--| .++++.||.|+....+. --++.+++.++.|
T Consensus 74 ravtrsyyrgaagalmvyditrrs---tynhlsswl~dar~ltnpnt~i~lignkadle~qrdv---~yeeak~faeeng 147 (215)
T KOG0097|consen 74 RAVTRSYYRGAAGALMVYDITRRS---TYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDV---TYEEAKEFAEENG 147 (215)
T ss_pred HHHHHHHhccccceeEEEEehhhh---hhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccC---cHHHHHHHHhhcC
Confidence 999999999999999999988633 33333 233333333 35678899999753221 1235567777765
Q ss_pred CCCCCCCeeecccccc
Q 013007 216 FPGDEIPIIRGSATSA 231 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g 231 (451)
+ .++..||++|
T Consensus 148 l-----~fle~saktg 158 (215)
T KOG0097|consen 148 L-----MFLEASAKTG 158 (215)
T ss_pred e-----EEEEeccccc
Confidence 4 5899999998
No 304
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=2.3e-10 Score=113.16 Aligned_cols=222 Identities=18% Similarity=0.237 Sum_probs=140.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.|.+.++++|++|.|||||+..|.+.... .+-.+...-+|+ .....++++|+.|| +-+
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk-------------~ti~~i~GPiTv------vsgK~RRiTflEcp---~Dl 124 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTK-------------QTIDEIRGPITV------VSGKTRRITFLECP---SDL 124 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHH-------------hhhhccCCceEE------eecceeEEEEEeCh---HHH
Confidence 45678899999999999999999754221 111111112333 23346789999999 335
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHH-HhcCCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELL-SFYKFPGDEI 221 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 221 (451)
..|+.-+..||.++|+||++-|..-.|.++|.++...|.|+++-|++..|+...+..+..++..++..+ .++ + ...
T Consensus 125 ~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEi-y--qGa 201 (1077)
T COG5192 125 HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEI-Y--QGA 201 (1077)
T ss_pred HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHH-c--CCc
Confidence 677787888999999999999999999999999999999999999999999986666666665544322 222 2 235
Q ss_pred CeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEe---------eCCCc--eEEEEEEEe-
Q 013007 222 PIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFS---------IQGRG--TVATGRVEQ- 289 (451)
Q Consensus 222 pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~---------~~~~G--~v~~g~v~s- 289 (451)
.+|..|... +|.-+ ...+..|..+|.-.--.|.+..+....+..+++-. -+.+| ..++|.+..
T Consensus 202 KlFylsgV~--nGRYp---DreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~Dlt~p~~ieq~~kv~rki~vYGYlhGt 276 (1077)
T COG5192 202 KLFYLSGVE--NGRYP---DREILNLSRFISVMKFRPLEWRNMHPYVLADRVDDLTLPVDIEQNPKVGRKITVYGYLHGT 276 (1077)
T ss_pred eEEEecccc--cCCCC---CHHHHHHHHHHhhhcccccccccCCceeehhhhccccchhhhhhccccCceEEEEEEecCC
Confidence 578888752 33222 12333444433221112333333333344433221 12233 357888877
Q ss_pred eeeecCCEEEEecccCCCCceeEEEEE
Q 013007 290 GTIKVGEEVEVLGLTQGPSLKTTVTGV 316 (451)
Q Consensus 290 G~l~~gd~v~i~p~~~~~~~~~~V~~I 316 (451)
|-.+...+|.|.+-+. |..+.|..+
T Consensus 277 ~Lp~~d~~vHIpGvGD--f~~adve~L 301 (1077)
T COG5192 277 GLPRKDMEVHIPGVGD--FRMADVEVL 301 (1077)
T ss_pred CCCCCCceEeccCccc--cchhhhhhc
Confidence 7777777888754332 444444444
No 305
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.6e-11 Score=102.89 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=111.6
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChH
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHA 139 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~ 139 (451)
..+|....|.++|.-+||||||+.++-......-.+ ++ +.+. ..|+.......+.....+.|||..|++
T Consensus 12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~-------l~--~~ki--~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGG-------LN--PSKI--TPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcC-------CC--HHHe--ecccceeecceeeccceeEEEEcCChH
Confidence 346677899999999999999999975332111000 00 0111 123333333344456789999999999
Q ss_pred HHHHHHHHhcccCCEEEEEEeCCCCC-Cc----cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 140 DYVKNMITGAAQMDGGILVVSAPDGP-MP----QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 140 ~~~~~~~~~~~~~d~~ilVvda~~g~-~~----~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
........++..+++++++|||++.. .. +.+.....-...|+| +++..||-|+.+..+. .++...+. +.+..
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p-~L~lankqd~q~~~~~-~El~~~~~-~~e~~ 157 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAP-VLVLANKQDLQNAMEA-AELDGVFG-LAELI 157 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCc-hhhhcchhhhhhhhhH-HHHHHHhh-hhhhc
Confidence 98888888899999999999999832 22 222233333456899 5578999999864332 22332222 23333
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+ ..+.|+.|+||++| +|+.+-.+++...++
T Consensus 158 ~--~rd~~~~pvSal~g----------egv~egi~w~v~~~~ 187 (197)
T KOG0076|consen 158 P--RRDNPFQPVSALTG----------EGVKEGIEWLVKKLE 187 (197)
T ss_pred C--CccCccccchhhhc----------ccHHHHHHHHHHHHh
Confidence 2 24689999999999 888888888877665
No 306
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.27 E-value=4.1e-11 Score=100.46 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=102.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEeee-CCeeEEEEecCChHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYET-AKRHYAHVDCPGHADY 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~~-~~~~i~iiDtPG~~~~ 141 (451)
..++.++|..-+|||+|+..++.. +.... . .+.+.++. ..+.++. ...++.+|||+|+++|
T Consensus 8 qfrlivigdstvgkssll~~ft~g-----kfael----s-------dptvgvdffarlie~~pg~riklqlwdtagqerf 71 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEG-----KFAEL----S-------DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcC-----ccccc----C-------CCccchHHHHHHHhcCCCcEEEEEEeeccchHHH
Confidence 468999999999999999999843 11100 0 01111111 0111111 1246789999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCccHHH-HHHHHH-HcC---CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQTKE-HILLAR-QVG---VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~t~~-~l~~~~-~~~---ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
..-+.++++++-++++|.|.++...-...+ .+..+. ..+ .+.+.+|..|+|+....+. -.++.+++.+..|+
T Consensus 72 rsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaEklAa~hgM 148 (213)
T KOG0091|consen 72 RSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAEKLAASHGM 148 (213)
T ss_pred HHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHHHHHHhcCc
Confidence 999999999999999999998743322222 222222 222 3457788999999863322 23467778888776
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
.++++||++| .++++.++.|.+
T Consensus 149 -----~FVETSak~g----------~NVeEAF~mlaq 170 (213)
T KOG0091|consen 149 -----AFVETSAKNG----------CNVEEAFDMLAQ 170 (213)
T ss_pred -----eEEEecccCC----------CcHHHHHHHHHH
Confidence 5999999998 677777666654
No 307
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.26 E-value=2e-10 Score=107.65 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=74.5
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
....++|+++|.+|+|||||+|+|++.. .+.. ....+.|...........+..+++|||||..+.
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~------~~~v---------~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGER------KAAT---------SAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCC------Cccc---------CCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 4456899999999999999999999541 1110 011133444444455566788999999996554
Q ss_pred H------H----HHHHhcc--cCCEEEEEEeCCC-CCCccHHHHHHHHHH-cCC---CeEEEEEeeccCCC
Q 013007 142 V------K----NMITGAA--QMDGGILVVSAPD-GPMPQTKEHILLARQ-VGV---PSLVCFLNKVDLVE 195 (451)
Q Consensus 142 ~------~----~~~~~~~--~~d~~ilVvda~~-g~~~~t~~~l~~~~~-~~i---p~iivviNK~D~~~ 195 (451)
. . .+...+. ..|++++|...+. .........+..+.. +|. .++++|+||+|...
T Consensus 93 ~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 93 VMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 1 1 1122222 4788888875553 233344445544443 342 35889999999875
No 308
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.25 E-value=9.6e-11 Score=90.66 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=71.8
Q ss_pred EEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCC
Q 013007 268 MPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRG 347 (451)
Q Consensus 268 ~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G 347 (451)
..|.++|++++.|+++.|+|.+|.+++|+.+.++|.+.- ..+.+|.+|+.+++.+++|.+|+.|++.|++++ ++++|
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~-~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~G 79 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEV-IYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVG 79 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCE-EEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCC
Confidence 568899988888999999999999999999999995421 256899999999999999999999999999876 99999
Q ss_pred eEEe
Q 013007 348 QVIA 351 (451)
Q Consensus 348 ~vl~ 351 (451)
|+|-
T Consensus 80 dvi~ 83 (84)
T cd03692 80 DIIE 83 (84)
T ss_pred CEEE
Confidence 9873
No 309
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.8e-11 Score=105.65 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=107.8
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.+...+|.++|--+|||||++..|-.. .... . --|+....-.+++.+..+++||..|+.++
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~-----E~vt------------t--vPTiGfnVE~v~ykn~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLG-----EIVT------------T--VPTIGFNVETVEYKNISFTVWDVGGQEKL 74 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccC-----Cccc------------C--CCccccceeEEEEcceEEEEEecCCCccc
Confidence 455679999999999999999887421 0000 0 12333333345556889999999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHH-HHHHH---cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHI-LLARQ---VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l-~~~~~---~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
..-...+....+++|+|||+++... ...++.+ .++.. .+.| ++++.||.|+...-.. .++.+.+....+
T Consensus 75 R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~als~-----~ei~~~L~l~~l 148 (181)
T KOG0070|consen 75 RPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAP-LLVFANKQDLPGALSA-----AEITNKLGLHSL 148 (181)
T ss_pred ccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCce-EEEEechhhccccCCH-----HHHHhHhhhhcc
Confidence 9999999999999999999987321 2233322 22222 2566 7789999998763211 133344443334
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
......+-.++|.+| +|+.+-+++|.+.+.
T Consensus 149 ~~~~w~iq~~~a~~G----------~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 149 RSRNWHIQSTCAISG----------EGLYEGLDWLSNNLK 178 (181)
T ss_pred CCCCcEEeecccccc----------ccHHHHHHHHHHHHh
Confidence 334456788999998 899999998877654
No 310
>PTZ00099 rab6; Provisional
Probab=99.25 E-value=4.3e-11 Score=106.63 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=79.2
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHH-HHc--CCCeEEEEEeeccCCChHHHHH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQV--GVPSLVCFLNKVDLVEDEELLE 201 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~-~~~--~ip~iivviNK~D~~~~~~~~~ 201 (451)
....+.||||||+++|.......++.+|++|+|+|.++... ....+++..+ ... ++| +++|.||+|+.+.... .
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~~~~v-~ 104 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI-IALVGNKTDLGDLRKV-T 104 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECcccccccCC-C
Confidence 34678899999999999888888999999999999987432 2222333333 222 455 7899999999642111 0
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
.++...+.+.++ .+++++||++| .|+.++++.|.+.+|.
T Consensus 105 --~~e~~~~~~~~~-----~~~~e~SAk~g----------~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 105 --YEEGMQKAQEYN-----TMFHETSAKAG----------HNIKVLFKKIAAKLPN 143 (176)
T ss_pred --HHHHHHHHHHcC-----CEEEEEECCCC----------CCHHHHHHHHHHHHHh
Confidence 112333444432 46899999999 8999999999988764
No 311
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.23 E-value=9.8e-11 Score=107.44 Aligned_cols=169 Identities=23% Similarity=0.270 Sum_probs=99.0
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc-----------CCc---hhhhhcCceEEeeEE------
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-----------DKA---PEEKKRGITIATAHV------ 121 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-----------d~~---~~e~~~g~t~~~~~~------ 121 (451)
..+...|++.|.+|+|||||+++|.......|+......-.. |.. ......++-+.....
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 445679999999999999999999988877776655433221 111 122233443332111
Q ss_pred ----------EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHH--HHHHHHHcCCCeEEEEEe
Q 013007 122 ----------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKE--HILLARQVGVPSLVCFLN 189 (451)
Q Consensus 122 ----------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~--~l~~~~~~~ip~iivviN 189 (451)
-++..++.+.|+.|-|...---. -...+|..++|+-+..|..-|... .+++ ..+ +|+|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~---I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi-~vVN 175 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEVD---IADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADI-FVVN 175 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHH---HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SE-EEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHH---HHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccE-EEEe
Confidence 02335778999999884332122 244599999999988776655432 2232 335 7899
Q ss_pred eccCCChHHHHHHHHHHHHHHHHhcC--CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 190 KVDLVEDEELLELVEMELRELLSFYK--FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
|.|+...+... .+++..+.... -..+..||+.+||.++ .|+++|.++|.++
T Consensus 176 KaD~~gA~~~~----~~l~~~l~l~~~~~~~W~ppV~~tsA~~~----------~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 176 KADRPGADRTV----RDLRSMLHLLREREDGWRPPVLKTSALEG----------EGIDELWEAIDEH 228 (266)
T ss_dssp --SHHHHHHHH----HHHHHHHHHCSTSCTSB--EEEEEBTTTT----------BSHHHHHHHHHHH
T ss_pred CCChHHHHHHH----HHHHHHHhhccccccCCCCCEEEEEeCCC----------CCHHHHHHHHHHH
Confidence 99965433333 34444444322 2235689999999988 8899999888765
No 312
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.20 E-value=3.6e-10 Score=112.81 Aligned_cols=81 Identities=23% Similarity=0.219 Sum_probs=52.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE--EE---------------------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH--VE--------------------- 122 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~--~~--------------------- 122 (451)
++|+++|.+|+|||||+|+|++.....+... +.|++... ..
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 4899999999999999999996533221111 11111110 00
Q ss_pred ee-eCCeeEEEEecCChH----H---HHHHHHHhcccCCEEEEEEeCC
Q 013007 123 YE-TAKRHYAHVDCPGHA----D---YVKNMITGAAQMDGGILVVSAP 162 (451)
Q Consensus 123 ~~-~~~~~i~iiDtPG~~----~---~~~~~~~~~~~~d~~ilVvda~ 162 (451)
.. .....+.|+||||.. + .....+..++.+|++++|||+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 00 112458899999942 1 3345566688999999999997
No 313
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.2e-10 Score=100.79 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=82.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
..|.++|..|+|||+|+-.|..... ... -.++......|........++|.|||.+.....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~-----~~T--------------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl 99 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH-----RGT--------------VTSIEPNEATYRLGSENVTLVDLPGHSRLRRKL 99 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc-----cCe--------------eeeeccceeeEeecCcceEEEeCCCcHHHHHHH
Confidence 5899999999999999988874310 000 122333344455566668999999999988888
Q ss_pred HHhcc---cCCEEEEEEeCCCCCC--ccHHHHH-HHHHH----cCCCeEEEEEeeccCCC---hHHHHHHHHHHHHHHH
Q 013007 146 ITGAA---QMDGGILVVSAPDGPM--PQTKEHI-LLARQ----VGVPSLVCFLNKVDLVE---DEELLELVEMELRELL 211 (451)
Q Consensus 146 ~~~~~---~~d~~ilVvda~~g~~--~~t~~~l-~~~~~----~~ip~iivviNK~D~~~---~~~~~~~~~~~~~~~l 211 (451)
...+. .+-+++||||+..-.. ....|.+ ..+.. .+.|++.++.||-|+.. ++-..+.++.++..+.
T Consensus 100 ~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr 178 (238)
T KOG0090|consen 100 LEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR 178 (238)
T ss_pred HHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence 77777 7899999999875221 2222222 22211 24555889999999875 2233344444554443
No 314
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.20 E-value=5.8e-10 Score=102.50 Aligned_cols=167 Identities=16% Similarity=0.230 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH-----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD----- 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~----- 140 (451)
++|+++|..|+||||++|.|++. ..+... ......|...........+..+++|||||..+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~------~~f~~~--------~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGK------EVFKSG--------SSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS------S-SS----------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc------cceeec--------cccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 58999999999999999999854 211100 01112333334444467789999999999332
Q ss_pred --HHHHHHHh----cccCCEEEEEEeCCCCCCccHHHHHHHHHH-cC---CCeEEEEEeeccCCChHHHHHHHH----HH
Q 013007 141 --YVKNMITG----AAQMDGGILVVSAPDGPMPQTKEHILLARQ-VG---VPSLVCFLNKVDLVEDEELLELVE----ME 206 (451)
Q Consensus 141 --~~~~~~~~----~~~~d~~ilVvda~~g~~~~t~~~l~~~~~-~~---ip~iivviNK~D~~~~~~~~~~~~----~~ 206 (451)
...++..+ ....+++|||+... .+....+..+..+.. +| .+++||++|..|...+....+.++ ..
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~ 145 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEA 145 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchh
Confidence 33444432 34589999999988 666666666655543 33 356889999999876443322233 34
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++++++.++- .+...+..+. ..+.....+.+||+.+.+.+.
T Consensus 146 l~~li~~c~~-----R~~~f~n~~~----~~~~~~~qv~~Ll~~ie~mv~ 186 (212)
T PF04548_consen 146 LQELIEKCGG-----RYHVFNNKTK----DKEKDESQVSELLEKIEEMVQ 186 (212)
T ss_dssp HHHHHHHTTT-----CEEECCTTHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhcCC-----EEEEEecccc----chhhhHHHHHHHHHHHHHHHH
Confidence 6777777653 2443333211 000112457788888776543
No 315
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.20 E-value=2.7e-10 Score=103.88 Aligned_cols=176 Identities=20% Similarity=0.293 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-------------------hhhh------hcCceEEe
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-------------------PEEK------KRGITIAT 118 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-------------------~~e~------~~g~t~~~ 118 (451)
....|.++|..|+||||++.+|...+..........+ +|.. +... ..||...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviN--LDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVIN--LDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEe--CCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3468999999999999999999877665544332211 1111 1111 11222111
Q ss_pred eEE--Ee---------eeCCeeEEEEecCChHHHHHHH------HHhc--ccCCEEEEEEeCCCCCCccH-----HHHHH
Q 013007 119 AHV--EY---------ETAKRHYAHVDCPGHADYVKNM------ITGA--AQMDGGILVVSAPDGPMPQT-----KEHIL 174 (451)
Q Consensus 119 ~~~--~~---------~~~~~~i~iiDtPG~~~~~~~~------~~~~--~~~d~~ilVvda~~g~~~~t-----~~~l~ 174 (451)
..+ .| ..+...+.+|||||+.+-.... ..++ ...-++++|||....-.+.| .....
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 100 01 1134568999999976621111 1111 23457889999876444333 22334
Q ss_pred HHHHcCCCeEEEEEeeccCCChHHHHHH------HHHHHHH---------------HHHhcCCCCCCCCeeecccccccc
Q 013007 175 LARQVGVPSLVCFLNKVDLVEDEELLEL------VEMELRE---------------LLSFYKFPGDEIPIIRGSATSALQ 233 (451)
Q Consensus 175 ~~~~~~ip~iivviNK~D~~~~~~~~~~------~~~~~~~---------------~l~~~~~~~~~~pvi~~Sa~~g~~ 233 (451)
++....+| +|+++||+|+.+.+-..+. .++.+.+ .++++ + .....+.+|+.+|
T Consensus 176 ilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeF-Y--~~lrtv~VSs~tG-- 249 (366)
T KOG1532|consen 176 ILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEF-Y--RSLRTVGVSSVTG-- 249 (366)
T ss_pred HHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHH-H--hhCceEEEecccC--
Confidence 55667899 7899999999874322221 1111111 11111 1 2467899999999
Q ss_pred CCCcccchhhHHHHHHHHHhhC
Q 013007 234 GKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 234 ~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+|.++++.++.+.+
T Consensus 250 --------~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 250 --------EGFDDFFTAVDESV 263 (366)
T ss_pred --------CcHHHHHHHHHHHH
Confidence 88888888876543
No 316
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=1.3e-11 Score=104.98 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=97.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
..++++++|..++||||++.+.++.+...++...+..+.+ +. ......++.++.+|||+|+++|-.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdfl---er-----------qi~v~~Edvr~mlWdtagqeEfDa 84 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFL---ER-----------QIKVLIEDVRSMLWDTAGQEEFDA 84 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhh---hH-----------HHHhhHHHHHHHHHHhccchhHHH
Confidence 3589999999999999999999977665555444321111 10 111223455678999999999999
Q ss_pred HHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHH--HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGP-MPQTKEHILLAR--QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~--~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
-+-.+++.|.+.+||.+.++.. +..+.+..+... ...+| .++|-||+|++++..... .+.+.+++.+.
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IP-tV~vqNKIDlveds~~~~---~evE~lak~l~----- 155 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIP-TVFVQNKIDLVEDSQMDK---GEVEGLAKKLH----- 155 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCC-eEEeeccchhhHhhhcch---HHHHHHHHHhh-----
Confidence 9889999999999999988743 334444443332 34789 568999999997543322 23334444432
Q ss_pred CCeeecccccc
Q 013007 221 IPIIRGSATSA 231 (451)
Q Consensus 221 ~pvi~~Sa~~g 231 (451)
..++.+|++..
T Consensus 156 ~RlyRtSvked 166 (246)
T KOG4252|consen 156 KRLYRTSVKED 166 (246)
T ss_pred hhhhhhhhhhh
Confidence 34677888766
No 317
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.19 E-value=5.4e-10 Score=108.16 Aligned_cols=173 Identities=21% Similarity=0.195 Sum_probs=95.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc--------hhhhh------cCceEEeeEE-------
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--------PEEKK------RGITIATAHV------- 121 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~--------~~e~~------~g~t~~~~~~------- 121 (451)
.....|+++|.+|+|||||++.|.......|.......-..... ...+. .+..+.....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 34578999999999999999999887766655433221110000 00000 1111111000
Q ss_pred ---------EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 122 ---------EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 122 ---------~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
.++..+..+.|+||||...-.. ..+..+|.++++.+...+ ...+.+. ....++|. ++++||+|
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~~e~---~i~~~aD~i~vv~~~~~~---~el~~~~-~~l~~~~~-ivv~NK~D 183 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQSEV---DIANMADTFVVVTIPGTG---DDLQGIK-AGLMEIAD-IYVVNKAD 183 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCchhhh---HHHHhhceEEEEecCCcc---HHHHHHH-HHHhhhcc-EEEEEccc
Confidence 0123467899999999653222 235568888888654322 1111211 11246674 58999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcC--CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 193 LVEDEELLELVEMELRELLSFYK--FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+....+ .......+...+..+. ......|++++||+++ .|+++|++.|.++
T Consensus 184 l~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g----------~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 184 GEGATN-VTIARLMLALALEEIRRREDGWRPPVLTTSAVEG----------RGIDELWDAIEEH 236 (300)
T ss_pred ccchhH-HHHHHHHHHHHHhhccccccCCCCCEEEEEccCC----------CCHHHHHHHHHHH
Confidence 986433 1111111111111111 1123457999999998 8888888888765
No 318
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=104.72 Aligned_cols=157 Identities=20% Similarity=0.154 Sum_probs=101.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
..+|+++|..|+|||+|+-++........ .|.+.+ +.......++.+...+.|+||+|.++|...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~---------y~ptie------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED---------YDPTIE------DSYRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc---------cCCCcc------ccceEEEEECCEEEEEEEEcCCCcccChHH
Confidence 46999999999999999988864311110 111111 111122223333456779999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHH---HH-cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHILLA---RQ-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~---~~-~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
...++..+|+.++|.+.++... ......+..+ +. ..+| +++|.||+|+...... -.++...+...+
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~R~V---~~eeg~~la~~~----- 138 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERERQV---SEEEGKALARSW----- 138 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhcccc---CHHHHHHHHHhc-----
Confidence 9999999999999999987432 2222222222 22 2467 7899999999753221 123444554443
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.++++++||+.. .++++++..|...+
T Consensus 139 ~~~f~E~Sak~~----------~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 139 GCAFIETSAKLN----------YNVDEVFYELVREI 164 (196)
T ss_pred CCcEEEeeccCC----------cCHHHHHHHHHHHH
Confidence 467999999987 67777777776643
No 319
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.14 E-value=8.7e-10 Score=102.48 Aligned_cols=179 Identities=21% Similarity=0.222 Sum_probs=109.8
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc-----------CCchhh---hhcCceEEeeE-----
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI-----------DKAPEE---KKRGITIATAH----- 120 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~-----------d~~~~e---~~~g~t~~~~~----- 120 (451)
+.......|++.|.+|+|||||++.|.....+.|...+...-.. |+.... ...++-+....
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccc
Confidence 33445579999999999999999999988888887655433221 111111 11122221100
Q ss_pred -----------EEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe
Q 013007 121 -----------VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN 189 (451)
Q Consensus 121 -----------~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN 189 (451)
.-++-.++.+.||.|-|...---.. ...+|..++|.-+..|..-|.... -.+.+-.+ +|||
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi-~vIN 197 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKA----GIMEIADI-IVIN 197 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHh----hhhhhhhe-eeEe
Confidence 0013346789999998844321111 234899999887776665555321 11222224 7899
Q ss_pred eccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 190 KVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
|.|+...+....++...+........-+++..|++.+||.+| +|+++|.+++.++..
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g----------~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEG----------EGIDELWDAIEDHRK 254 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccC----------CCHHHHHHHHHHHHH
Confidence 999766555444454444333222333457899999999998 889999999887643
No 320
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=6.4e-10 Score=108.13 Aligned_cols=172 Identities=23% Similarity=0.329 Sum_probs=100.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhc----CccceeeeeccCCchhhhhcCceEEe---eE-----EEe---eeC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEE----GKAKAIAFDEIDKAPEEKKRGITIAT---AH-----VEY---ETA 126 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~----g~~~~~~~~~~d~~~~e~~~g~t~~~---~~-----~~~---~~~ 126 (451)
....+.|+++|++++|||||+|++.+.+.-. .....+ ..|..+.+. .|.|+.+ .+ +.+ +.-
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~R---a~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~ 89 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKER---AQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGT 89 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhH---HHhccCcCC-CCCCcccCCCccccCcceEEeccCCC
Confidence 4556899999999999999999999762211 110100 112222222 2533332 22 111 112
Q ss_pred CeeEEEEecCChHH-------------------------HHHH----HHHhcc-cCCEEEEEE-eCC------CCCCccH
Q 013007 127 KRHYAHVDCPGHAD-------------------------YVKN----MITGAA-QMDGGILVV-SAP------DGPMPQT 169 (451)
Q Consensus 127 ~~~i~iiDtPG~~~-------------------------~~~~----~~~~~~-~~d~~ilVv-da~------~g~~~~t 169 (451)
...+.++||+|..+ |... +...+. .+|.+|+|. |++ ++.....
T Consensus 90 ~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 90 KFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred cccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHH
Confidence 35789999999443 2222 222344 799999999 876 4566667
Q ss_pred HHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHH
Q 013007 170 KEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMD 249 (451)
Q Consensus 170 ~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~ 249 (451)
.+.+..++..++| +|+++||.|-..++. ..+ ..++-+++ ++|++++|...- ..+.+..+|+
T Consensus 170 e~~i~eLk~~~kP-fiivlN~~dp~~~et--~~l---~~~l~eky-----~vpvl~v~c~~l--------~~~DI~~il~ 230 (492)
T TIGR02836 170 ERVIEELKELNKP-FIILLNSTHPYHPET--EAL---RQELEEKY-----DVPVLAMDVESM--------RESDILSVLE 230 (492)
T ss_pred HHHHHHHHhcCCC-EEEEEECcCCCCchh--HHH---HHHHHHHh-----CCceEEEEHHHc--------CHHHHHHHHH
Confidence 7888999999999 779999999432221 111 12333333 367888876432 1144555555
Q ss_pred HHHhhCC
Q 013007 250 AVDEYIP 256 (451)
Q Consensus 250 ~l~~~lp 256 (451)
.+...+|
T Consensus 231 ~vL~EFP 237 (492)
T TIGR02836 231 EVLYEFP 237 (492)
T ss_pred HHHhcCC
Confidence 5544344
No 321
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.11 E-value=7.6e-10 Score=101.36 Aligned_cols=168 Identities=17% Similarity=0.099 Sum_probs=92.2
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhh--hcCceEEe---eEEE-------------e
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEK--KRGITIAT---AHVE-------------Y 123 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~--~~g~t~~~---~~~~-------------~ 123 (451)
....++|+++|+.|+|||||+++|.......-+..............++ ..|..+.. .... .
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 3456899999999999999999998764321111111111100011111 12221110 0000 0
Q ss_pred eeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH-HHHHH
Q 013007 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLEL 202 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~ 202 (451)
...+..+.|++|.|.... ........+..+.|+|+.++...+. ......+.+ .++++||+|+.+.. ...+.
T Consensus 99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a-~iiv~NK~Dl~~~~~~~~~~ 170 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEA-DLIVINKADLAEAVGFDVEK 170 (207)
T ss_pred ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchhh----hhHhHHhhC-CEEEEEHHHccccchhhHHH
Confidence 011346889999992110 0111123466678899876543222 122234556 46899999998531 11222
Q ss_pred HHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 203 VEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 203 ~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+. +.++.+. ...|++++||+++ .|++++++++.++
T Consensus 171 ~~----~~l~~~~---~~~~i~~~Sa~~g----------~gv~~l~~~i~~~ 205 (207)
T TIGR00073 171 MK----ADAKKIN---PEAEIILMSLKTG----------EGLDEWLEFLEGQ 205 (207)
T ss_pred HH----HHHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHHh
Confidence 32 2333332 2478999999999 9999999998764
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.08 E-value=5e-10 Score=98.88 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=48.2
Q ss_pred CeeEEEEecCChHH----HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 127 KRHYAHVDCPGHAD----YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 127 ~~~i~iiDtPG~~~----~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
...+.|+||||..+ ....+..++..+|++|+|+++......+..+.+........+.+++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 45699999999543 123445556889999999999997777767777666666666688999995
No 323
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.05 E-value=8.6e-09 Score=98.34 Aligned_cols=143 Identities=20% Similarity=0.304 Sum_probs=83.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH--
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD-- 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~-- 140 (451)
.+||.++|..|.|||||+|.|.+........ ..+.......+...+..........+ ..++++||||+.+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 5799999999999999999998642211110 00111112223344444444444333 4678999999433
Q ss_pred -----------HHHH-----HHHh---c------ccCCEEEEEEeCC-CCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 141 -----------YVKN-----MITG---A------AQMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 141 -----------~~~~-----~~~~---~------~~~d~~ilVvda~-~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
|+.. +... . ...|++|++++++ +++.+.+.+.++.+... ++ +|-||.|.|..
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~-vN-vIPvIaKaD~l 155 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR-VN-VIPVIAKADTL 155 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT-SE-EEEEESTGGGS
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc-cc-EEeEEeccccc
Confidence 2111 1111 1 1358999999987 46777777766665543 55 88999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCC
Q 013007 195 EDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
.+++ +..+++.+.+-++..+.
T Consensus 156 t~~e-l~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 156 TPEE-LQAFKQRIREDLEENNI 176 (281)
T ss_dssp -HHH-HHHHHHHHHHHHHHTT-
T ss_pred CHHH-HHHHHHHHHHHHHHcCc
Confidence 8555 56677788888887654
No 324
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=4.8e-09 Score=85.95 Aligned_cols=156 Identities=13% Similarity=0.118 Sum_probs=101.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
..+|..+|-.++||||++-.|.-. ..... -.|+....-...+.+..+++||..|+.+..+-
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~-----~~~~~--------------ipTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLG-----QSVTT--------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcC-----CCccc--------------ccccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 679999999999999999888622 10000 01111122223455778999999999999999
Q ss_pred HHHhcccCCEEEEEEeCCCCCC-ccHHHHHH-HHH---HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCC
Q 013007 145 MITGAAQMDGGILVVSAPDGPM-PQTKEHIL-LAR---QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGD 219 (451)
Q Consensus 145 ~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~-~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~ 219 (451)
..+++....++|||+|+.+... ...+..+. ++. ....+ ++|..||-|+.+... . +++.++++--...+.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A~~-p----qei~d~leLe~~r~~ 151 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAI-ILILANKQDLPDAMK-P----QEIQDKLELERIRDR 151 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcce-EEEEecCcccccccC-H----HHHHHHhccccccCC
Confidence 9999999999999999876421 22222222 211 12456 678899999986321 1 234444433223334
Q ss_pred CCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 220 EIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 220 ~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
..-+.|.||.+| .++.+=+.+|.+.+
T Consensus 152 ~W~vqp~~a~~g----------dgL~eglswlsnn~ 177 (180)
T KOG0071|consen 152 NWYVQPSCALSG----------DGLKEGLSWLSNNL 177 (180)
T ss_pred ccEeeccccccc----------hhHHHHHHHHHhhc
Confidence 556889999988 77777777776543
No 325
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.04 E-value=2.3e-09 Score=81.05 Aligned_cols=71 Identities=32% Similarity=0.504 Sum_probs=61.7
Q ss_pred ceEEEEEEEeeeeecCCEEEEecccCC--CCceeEEEEEeecceeccEEecCCeEEEEeccccccC-CCCCeEEe
Q 013007 280 GTVATGRVEQGTIKVGEEVEVLGLTQG--PSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRED-VQRGQVIA 351 (451)
Q Consensus 280 G~v~~g~v~sG~l~~gd~v~i~p~~~~--~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~-i~~G~vl~ 351 (451)
|++++|||.+|+|++||+|++.| ... .+...+|++|+.++....++.+|+.+++.+......+ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~-~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLP-NGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEES-TTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECc-cCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999987 321 1245999999999999999999999999988777788 89999996
No 326
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.03 E-value=3.6e-09 Score=81.01 Aligned_cols=82 Identities=39% Similarity=0.578 Sum_probs=71.1
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCC
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
+++.|+++|.+++.|++++|+|.+|+|++||.+.+.+.. .....+|++|+.++.+++++.|||.+++.+... .+++
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~--~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~--~~~~ 76 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGG--GGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDK--DDIK 76 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCC--ceeEEEEeEeEecCceeceecCCCEEEEEEccc--cccC
Confidence 468899999999999999999999999999999998742 245789999999899999999999999987633 3799
Q ss_pred CCeEEe
Q 013007 346 RGQVIA 351 (451)
Q Consensus 346 ~G~vl~ 351 (451)
.||+++
T Consensus 77 ~g~~l~ 82 (83)
T cd01342 77 IGDTLT 82 (83)
T ss_pred CCCEec
Confidence 999986
No 327
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.02 E-value=2.7e-09 Score=96.87 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=91.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhh--hhcCc-----eEEe--e-EEE----e--------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE--KKRGI-----TIAT--A-HVE----Y-------- 123 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e--~~~g~-----t~~~--~-~~~----~-------- 123 (451)
.+|+++|..|+|||||+++|.+.............+.......+ ...+. .+.. . ... .
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 81 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTAIREDASMNLEA 81 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccceeccCHHHHHHH
Confidence 48999999999999999999876543322111111111111111 11111 0000 0 000 0
Q ss_pred ------eeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh-
Q 013007 124 ------ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED- 196 (451)
Q Consensus 124 ------~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~- 196 (451)
......+.+|+|.|.. ...... ...+|.++.|+|+.++...+.. . ........ ++++||+|+.+.
T Consensus 82 L~~l~~~~~~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~-~---~~qi~~ad-~~~~~k~d~~~~~ 153 (199)
T TIGR00101 82 VAEMEARFPPLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK-G---GPGITRSD-LLVINKIDLAPMV 153 (199)
T ss_pred HHHHHhcCCCCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh-h---HhHhhhcc-EEEEEhhhccccc
Confidence 1123567899999921 111001 1126889999999876553221 1 11222222 478999999852
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 197 EELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 197 ~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
....+.+++ .++.+. ...|++++||++| +|+++++++|.++.
T Consensus 154 ~~~~~~~~~----~~~~~~---~~~~i~~~Sa~~g----------~gi~el~~~i~~~~ 195 (199)
T TIGR00101 154 GADLGVMER----DAKKMR---GEKPFIFTNLKTK----------EGLDTVIDWIEHYA 195 (199)
T ss_pred cccHHHHHH----HHHHhC---CCCCEEEEECCCC----------CCHHHHHHHHHhhc
Confidence 122333333 333332 2478999999999 99999999998653
No 328
>PTZ00258 GTP-binding protein; Provisional
Probab=99.02 E-value=7.7e-09 Score=102.23 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=56.5
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC----------------
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA---------------- 126 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~---------------- 126 (451)
...++|+++|.+|+|||||+|+|++.....+.. .+.|++.....+...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~ 82 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPKSI 82 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCccc
Confidence 345799999999999999999998653322221 234443332222221
Q ss_pred -CeeEEEEecCChH-------HHHHHHHHhcccCCEEEEEEeCC
Q 013007 127 -KRHYAHVDCPGHA-------DYVKNMITGAAQMDGGILVVSAP 162 (451)
Q Consensus 127 -~~~i~iiDtPG~~-------~~~~~~~~~~~~~d~~ilVvda~ 162 (451)
..++.|+||||.. .........++.+|++++|||+.
T Consensus 83 ~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 83 VPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2358999999932 24445666778899999999985
No 329
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.02 E-value=2.5e-09 Score=82.97 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=67.0
Q ss_pred CCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEecc
Q 013007 263 DKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRG 338 (451)
Q Consensus 263 ~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~ 338 (451)
++||.+.|+++..+++.|+++++||.+|+|+.||.|++.. ....+|.+|... ..++++|.|||++++.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-----~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~--- 72 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-----EEKIKITELRVFNNGEVVTADTVTAGDIAILT--- 72 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-----CcEEEeceeEEEeCCCeEECcEECCCCEEEEE---
Confidence 3689999999999999999999999999999999998743 124677777543 4789999999999885
Q ss_pred ccccCCCCCeEEec
Q 013007 339 LKREDVQRGQVIAK 352 (451)
Q Consensus 339 ~~~~~i~~G~vl~~ 352 (451)
...++..||+|++
T Consensus 73 -gl~~~~~Gdtl~~ 85 (85)
T cd03690 73 -GLKGLRVGDVLGD 85 (85)
T ss_pred -CCCCCcCccccCC
Confidence 3457889999863
No 330
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.00 E-value=4.5e-09 Score=100.06 Aligned_cols=117 Identities=13% Similarity=0.076 Sum_probs=69.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
..++|+++|.+|+||||++|+|++... +... + . .+.+...........+.++++|||||..+.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v------~~vs---~-f-----~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERI------ATVS---A-F-----QSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY 101 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc------cccc---C-C-----CCcceeEEEEEEEECCeEEEEEECCCCCchHH
Confidence 568999999999999999999995421 1100 0 0 011111112223346788999999996643
Q ss_pred HH-HHHHhc------ccCCEEEEEEeCCC-CCCccHHHHHHHHHH-cC---CCeEEEEEeeccCCC
Q 013007 142 VK-NMITGA------AQMDGGILVVSAPD-GPMPQTKEHILLARQ-VG---VPSLVCFLNKVDLVE 195 (451)
Q Consensus 142 ~~-~~~~~~------~~~d~~ilVvda~~-g~~~~t~~~l~~~~~-~~---ip~iivviNK~D~~~ 195 (451)
.. .....+ ...|++++|...+. ......+..+..+.. +| ..+.||++|+.|..+
T Consensus 102 ~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 102 INDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 11 111111 25899999965443 233344445544432 23 245789999999774
No 331
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.99 E-value=3.8e-09 Score=99.90 Aligned_cols=166 Identities=19% Similarity=0.145 Sum_probs=90.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEE------------------Eee
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHV------------------EYE 124 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~------------------~~~ 124 (451)
+...-|.++|.+|+|||||+++|.+.+...........+.......++-+...+....+ .+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~ 181 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLP 181 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHh
Confidence 45689999999999999999999887654332222222211112223222111111000 012
Q ss_pred eCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChH-HHHHHH
Q 013007 125 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDE-ELLELV 203 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~-~~~~~~ 203 (451)
..+..+.||++-|....-... -+ ..+.-+.|++..+|..... +.-..+....+ +++||+|+.+.. ..++.+
T Consensus 182 ~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dkpl----Kyp~~f~~ADI-VVLNKiDLl~~~~~dle~~ 253 (290)
T PRK10463 182 LDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDKPL----KYPHMFAAASL-MLLNKVDLLPYLNFDVEKC 253 (290)
T ss_pred hcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECccccccch----hccchhhcCcE-EEEEhHHcCcccHHHHHHH
Confidence 234467788888741100000 00 1234457777776643111 11122344544 799999998621 122222
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 204 EMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 204 ~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
. +.++.+. ...+++++||++| +|+++|+++|.+
T Consensus 254 ~----~~lr~ln---p~a~I~~vSA~tG----------eGld~L~~~L~~ 286 (290)
T PRK10463 254 I----ACAREVN---PEIEIILISATSG----------EGMDQWLNWLET 286 (290)
T ss_pred H----HHHHhhC---CCCcEEEEECCCC----------CCHHHHHHHHHH
Confidence 2 2233322 2478999999999 999999999976
No 332
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.98 E-value=4.8e-09 Score=97.29 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=51.3
Q ss_pred eeEEEEecCChH--------H----HH-HHHHHhccc-CCEEEEEEeCCCCCCccH-HHHHHHHHHcCCCeEEEEEeecc
Q 013007 128 RHYAHVDCPGHA--------D----YV-KNMITGAAQ-MDGGILVVSAPDGPMPQT-KEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 128 ~~i~iiDtPG~~--------~----~~-~~~~~~~~~-~d~~ilVvda~~g~~~~t-~~~l~~~~~~~ip~iivviNK~D 192 (451)
..++++||||.. + .+ ..+..++.. .+.+++|+|++.++..+. .+.++.+...+.+ .++|+||+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~r-ti~ViTK~D 203 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGER-TIGVITKLD 203 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCc-EEEEEECCC
Confidence 578999999964 1 12 234445563 569999999999888776 5777778788888 668999999
Q ss_pred CCCh
Q 013007 193 LVED 196 (451)
Q Consensus 193 ~~~~ 196 (451)
..+.
T Consensus 204 ~~~~ 207 (240)
T smart00053 204 LMDE 207 (240)
T ss_pred CCCc
Confidence 9863
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.97 E-value=7.2e-08 Score=92.29 Aligned_cols=148 Identities=22% Similarity=0.348 Sum_probs=97.6
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhh-hhcCceEEeeEEEeeeCC--eeEEEEecCCh
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE-KKRGITIATAHVEYETAK--RHYAHVDCPGH 138 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e-~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~ 138 (451)
+...++|.++|..|.||||++|.|++........ .+....+ ..+++.+......+..++ .++++|||||.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~-------~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETE-------IDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCC-------ccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 4556899999999999999999999763322210 0111111 333455555544444444 46789999995
Q ss_pred HH-------------HHHHHH--------Hhcc-------cCCEEEEEEeCC-CCCCccHHHHHHHHHHcCCCeEEEEEe
Q 013007 139 AD-------------YVKNMI--------TGAA-------QMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLN 189 (451)
Q Consensus 139 ~~-------------~~~~~~--------~~~~-------~~d~~ilVvda~-~g~~~~t~~~l~~~~~~~ip~iivviN 189 (451)
.| |+.... .-.+ ..+++|+.+..+ +|+.+.+.+.+..+... +. +|-||-
T Consensus 93 GD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~-vN-lIPVI~ 170 (373)
T COG5019 93 GDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR-VN-LIPVIA 170 (373)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc-cC-eeeeee
Confidence 54 222221 1111 357899999876 58888888887766643 44 788999
Q ss_pred eccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCee
Q 013007 190 KVDLVEDEELLELVEMELRELLSFYKFPGDEIPII 224 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi 224 (451)
|.|....++ +...++.+.+.++.. ++++|
T Consensus 171 KaD~lT~~E-l~~~K~~I~~~i~~~-----nI~vf 199 (373)
T COG5019 171 KADTLTDDE-LAEFKERIREDLEQY-----NIPVF 199 (373)
T ss_pred ccccCCHHH-HHHHHHHHHHHHHHh-----CCcee
Confidence 999998666 456777888888775 45666
No 334
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.95 E-value=1.2e-08 Score=99.65 Aligned_cols=81 Identities=23% Similarity=0.220 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-----------------Ce
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-----------------KR 128 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 128 (451)
++|+++|.+|+|||||+|+|++.....+. ..+.|++.....+... ..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~n----------------ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAAN----------------YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecc----------------cccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 58999999999999999999965322211 1233333321111111 13
Q ss_pred eEEEEecCChH-------HHHHHHHHhcccCCEEEEEEeCC
Q 013007 129 HYAHVDCPGHA-------DYVKNMITGAAQMDGGILVVSAP 162 (451)
Q Consensus 129 ~i~iiDtPG~~-------~~~~~~~~~~~~~d~~ilVvda~ 162 (451)
++.++|+||.. ......+..++.+|++++|||+.
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 58999999932 23445666778999999999985
No 335
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.94 E-value=8e-09 Score=79.89 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=63.8
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccc
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
|...|++++.+++.|.++++||.+|+|++||.|.+.... ...+|..|.. ...++++|.|||++++. ++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--gl-- 72 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG----KKERISRLLQPFADQYQEIPSLSAGNIGVIT--GL-- 72 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC----CEEEeeEEEEEECCCceECCeeCCCCEEEEE--CC--
Confidence 357899999999999999999999999999999875422 3467777743 34789999999999874 44
Q ss_pred cCCCCCeEEe
Q 013007 342 EDVQRGQVIA 351 (451)
Q Consensus 342 ~~i~~G~vl~ 351 (451)
.+++.||+|+
T Consensus 73 ~~~~~Gdtl~ 82 (83)
T cd04092 73 KQTRTGDTLV 82 (83)
T ss_pred CCcccCCEEe
Confidence 5689999997
No 336
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.92 E-value=2.7e-09 Score=87.50 Aligned_cols=144 Identities=22% Similarity=0.240 Sum_probs=89.6
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADY 141 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~ 141 (451)
...++|+++|--++||||++..|.+. |.....+..|..+ ...++. ..++++||..|+...
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sE---------------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~I 75 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSE---------------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGI 75 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccC---------------ChhhccccCCcce----EEEeecCcEEEEEEecCCcccc
Confidence 34679999999999999999999743 2111222223322 223333 478999999999887
Q ss_pred HHHHHHhcccCCEEEEEEeCCCC-CCccHHHHH-HH---HHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 142 VKNMITGAAQMDGGILVVSAPDG-PMPQTKEHI-LL---ARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g-~~~~t~~~l-~~---~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
..-...++...|..|+|||+++. .+..+-+++ ++ .+...+| +.+..||-|+..... .+++. .-+.--++
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vp-vlIfankQdlltaa~-~eeia----~klnl~~l 149 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVP-VLIFANKQDLLTAAK-VEEIA----LKLNLAGL 149 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccc-eeehhhhhHHHhhcc-hHHHH----Hhcchhhh
Confidence 77777888899999999997763 223333333 22 2344678 557889999875221 11111 11111112
Q ss_pred CCCCCCeeecccccc
Q 013007 217 PGDEIPIIRGSATSA 231 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g 231 (451)
......+-.+||+++
T Consensus 150 rdRswhIq~csals~ 164 (185)
T KOG0074|consen 150 RDRSWHIQECSALSL 164 (185)
T ss_pred hhceEEeeeCccccc
Confidence 222356778888887
No 337
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.92 E-value=2.4e-09 Score=94.93 Aligned_cols=156 Identities=22% Similarity=0.196 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEe--eEEEee-eCCeeEEEEecCChHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIAT--AHVEYE-TAKRHYAHVDCPGHADY 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~--~~~~~~-~~~~~i~iiDtPG~~~~ 141 (451)
.++++++|...+|||.|+-.++.. .++++....+. +. ..+... .....+.+|||.|+++|
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~----------------~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedY 66 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN----------------AFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDY 66 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC----------------cCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCccc
Confidence 579999999999999999777633 22222221111 11 112221 22345789999999999
Q ss_pred HHHHHHhcccCCEEEEEEeCCCCCCcc--HHHHHHHHHH--cCCCeEEEEEeeccCCChHHHHHHHH---------HHHH
Q 013007 142 VKNMITGAAQMDGGILVVSAPDGPMPQ--TKEHILLARQ--VGVPSLVCFLNKVDLVEDEELLELVE---------MELR 208 (451)
Q Consensus 142 ~~~~~~~~~~~d~~ilVvda~~g~~~~--t~~~l~~~~~--~~ip~iivviNK~D~~~~~~~~~~~~---------~~~~ 208 (451)
-+-..-.+..+|+++++.+..+...-. ....+-..+. -++| +|+|.+|.|+-++....+.+. ++..
T Consensus 67 DrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 67 DRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVP-IILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred ccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCC-EEEEeehHHhhhCHHHHHHHHhccCCcccHHHHH
Confidence 775445777899999988876532211 1111112222 3688 889999999986554433333 3456
Q ss_pred HHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 209 ELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 209 ~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
++.+++|. ..++++||++. .|+.+.++.-.
T Consensus 146 ~lA~~iga----~~y~EcSa~tq----------~~v~~vF~~a~ 175 (198)
T KOG0393|consen 146 ELAKEIGA----VKYLECSALTQ----------KGVKEVFDEAI 175 (198)
T ss_pred HHHHHhCc----ceeeeehhhhh----------CCcHHHHHHHH
Confidence 67777775 67999999987 66666655443
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.91 E-value=4.4e-09 Score=92.14 Aligned_cols=164 Identities=20% Similarity=0.220 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhc---Cce---EEee-EEEe--------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR---GIT---IATA-HVEY-------------- 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~---g~t---~~~~-~~~~-------------- 123 (451)
.+.|.+.|++|||||||+.++++.+.+.-+...+..+.......++-+ |.. +.+. -.+.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 589999999999999999999988766533333333333222222222 111 1111 0000
Q ss_pred eeCCeeEEEEecCChHHHHHHHHHhcccCC-EEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHH-HH
Q 013007 124 ETAKRHYAHVDCPGHADYVKNMITGAAQMD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL-LE 201 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d-~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~-~~ 201 (451)
...+..+.||...| ...... .....| .-|+|||..+|...--+-+-.+.+ ..+ +||||.|+.+.-+. ++
T Consensus 93 ~~~~~Dll~iEs~G--NL~~~~--sp~L~d~~~v~VidvteGe~~P~K~gP~i~~----aDl-lVInK~DLa~~v~~dle 163 (202)
T COG0378 93 DFPDLDLLFIESVG--NLVCPF--SPDLGDHLRVVVIDVTEGEDIPRKGGPGIFK----ADL-LVINKTDLAPYVGADLE 163 (202)
T ss_pred cCCcCCEEEEecCc--ceeccc--CcchhhceEEEEEECCCCCCCcccCCCceeE----eeE-EEEehHHhHHHhCccHH
Confidence 11224678888888 211111 111245 889999999876533221111111 124 78999999863221 12
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 202 LVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 202 ~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
.+.+-.++.. .+.||+.+|+++| +|++++++++...
T Consensus 164 ----vm~~da~~~n---p~~~ii~~n~ktg----------~G~~~~~~~i~~~ 199 (202)
T COG0378 164 ----VMARDAKEVN---PEAPIIFTNLKTG----------EGLDEWLRFIEPQ 199 (202)
T ss_pred ----HHHHHHHHhC---CCCCEEEEeCCCC----------cCHHHHHHHHHhh
Confidence 2223333322 3589999999999 9999999998653
No 339
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.7e-09 Score=89.01 Aligned_cols=157 Identities=20% Similarity=0.163 Sum_probs=100.2
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHH
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVK 143 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~ 143 (451)
...+|.++|--|+||+|+.-+|-- |.... .. -|+.......++.+.++++||..|+.....
T Consensus 17 ~e~rililgldGaGkttIlyrlqv-----gevvt------------tk--Ptigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQV-----GEVVT------------TK--PTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEccc-----Ccccc------------cC--CCCCcCccccccccccceeeEccCcccccH
Confidence 457899999999999998766531 11100 00 112222222344677899999999998888
Q ss_pred HHHHhcccCCEEEEEEeCCCCCC--ccHHHHHHHHH---HcCCCeEEEEEeeccCCChHHHHHHHHH-HHHHHHHhcCCC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPM--PQTKEHILLAR---QVGVPSLVCFLNKVDLVEDEELLELVEM-ELRELLSFYKFP 217 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~--~~t~~~l~~~~---~~~ip~iivviNK~D~~~~~~~~~~~~~-~~~~~l~~~~~~ 217 (451)
-...++...|.+|+|||.++... ..-.+...++. ..+ -.++++.||+|......+-+.... .+.++-+
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~-a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~----- 151 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH-AKLLVFANKQDYSGALTRSEVLKMLGLQKLKD----- 151 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC-ceEEEEeccccchhhhhHHHHHHHhChHHHhh-----
Confidence 88888999999999999987432 22223333332 234 347899999998653221111110 1112211
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
..+.++..||.+| +|+++.+++|.+-+.
T Consensus 152 -r~~~Iv~tSA~kg----------~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 152 -RIWQIVKTSAVKG----------EGLDPAMDWLQRPLK 179 (182)
T ss_pred -heeEEEeeccccc----------cCCcHHHHHHHHHHh
Confidence 2367999999999 999999999977543
No 340
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.90 E-value=1.9e-08 Score=78.38 Aligned_cols=81 Identities=30% Similarity=0.399 Sum_probs=64.2
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee----cceeccEEecCCeEEEEeccccc
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM----FKKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~----~~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
|.+.|+++..+++.|+++++||.+|+|++||+|++...+. ...+.+|.+|.. ...+++++.|||++++. ++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~-~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~--gl-- 75 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDG-KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIA--GI-- 75 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCC-CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEE--CC--
Confidence 5789999999999999999999999999999998865321 012467777743 24789999999998664 43
Q ss_pred cCCCCCeEEe
Q 013007 342 EDVQRGQVIA 351 (451)
Q Consensus 342 ~~i~~G~vl~ 351 (451)
.++..||+|+
T Consensus 76 ~~~~~Gdtl~ 85 (86)
T cd03691 76 EDITIGDTIC 85 (86)
T ss_pred CCCcccceec
Confidence 5788999986
No 341
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.89 E-value=7.2e-09 Score=96.83 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=98.5
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCCeeEEEEecCChHH-
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAKRHYAHVDCPGHAD- 140 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~~~i~iiDtPG~~~- 140 (451)
+...|+++|.+|+|||||+++|++........-|. |.+.. ...+ .++..+.+.||-|+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFA----------------TLDpT~h~a~L-psg~~vlltDTvGFisd 239 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFA----------------TLDPTLHSAHL-PSGNFVLLTDTVGFISD 239 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhhe----------------eccchhhhccC-CCCcEEEEeechhhhhh
Confidence 44689999999999999999999654332222221 11111 1112 1356688999999543
Q ss_pred -------HHHHHHHhcccCCEEEEEEeCCCCC-CccHHHHHHHHHHcCCC------eEEEEEeeccCCChHHHHHHHHHH
Q 013007 141 -------YVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVP------SLVCFLNKVDLVEDEELLELVEME 206 (451)
Q Consensus 141 -------~~~~~~~~~~~~d~~ilVvda~~g~-~~~t~~~l~~~~~~~ip------~iivviNK~D~~~~~~~~~~~~~~ 206 (451)
-+..++.....+|.++-|+|.+++. ..|-...+..++..++| .+|=|=||+|..+..-
T Consensus 240 LP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-------- 311 (410)
T KOG0410|consen 240 LPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-------- 311 (410)
T ss_pred CcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--------
Confidence 1233445567899999999999864 45666677888888886 2345667777654210
Q ss_pred HHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 207 LRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 207 ~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
+.+.--.+++||++| .|++++++++...+.
T Consensus 312 ----------e~E~n~~v~isaltg----------dgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 312 ----------EEEKNLDVGISALTG----------DGLEELLKAEETKVA 341 (410)
T ss_pred ----------ccccCCccccccccC----------ccHHHHHHHHHHHhh
Confidence 001122788999999 999999999987554
No 342
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.89 E-value=1.8e-08 Score=78.00 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=64.1
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccc
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
|...|++++.+++.|+++++||.+|+|++||.|++.... ...+|..|... ..++++|.|||++++. |+
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~----~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~--g~-- 72 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKG----KKERVGRLLRMHGKKQEEVEEAGAGDIGAVA--GL-- 72 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCC----cEEEeeEEEEEcCCCceECCEeCCCCEEEEE--CC--
Confidence 356789999999999999999999999999999886532 34677777532 4789999999999884 44
Q ss_pred cCCCCCeEEec
Q 013007 342 EDVQRGQVIAK 352 (451)
Q Consensus 342 ~~i~~G~vl~~ 352 (451)
.+++.||+|++
T Consensus 73 ~~~~~Gdtl~~ 83 (83)
T cd04088 73 KDTATGDTLCD 83 (83)
T ss_pred CCCccCCEeeC
Confidence 46889999863
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.88 E-value=4.9e-09 Score=96.15 Aligned_cols=159 Identities=20% Similarity=0.208 Sum_probs=102.6
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhh-hcCceEEeeEEEeeeCCeeEEEEecCC-----
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEK-KRGITIATAHVEYETAKRHYAHVDCPG----- 137 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~-~~g~t~~~~~~~~~~~~~~i~iiDtPG----- 137 (451)
....+++.|..|+|||+|+|.+++.....- .+. ..|.|....+.. -+..+.++|.||
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~--------------t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIAD--------------TSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhh--------------hcCCCCccceeeeeee---ccceEEEEecCCccccc
Confidence 457999999999999999999986522110 011 335555444433 357799999999
Q ss_pred -----hHHHHHHHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH-----HHHHHH
Q 013007 138 -----HADYVKNMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE-----LLELVE 204 (451)
Q Consensus 138 -----~~~~~~~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~-----~~~~~~ 204 (451)
-.|+.+.+..++ ...--+.+++|++.++++-+...+.++...++| +.+|+||||....-. ....++
T Consensus 198 y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP-~t~vfTK~DK~k~~~~~~kKp~~~i~ 276 (320)
T KOG2486|consen 198 YGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVP-MTSVFTKCDKQKKVKRTGKKPGLNIK 276 (320)
T ss_pred CCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCC-eEEeeehhhhhhhccccccCccccce
Confidence 233333333333 234557788999999999999999999999999 668999999864211 001111
Q ss_pred HHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 205 MELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 205 ~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
..+..+... +-....|++.+|+.++ .|+++|+-.+.
T Consensus 277 ~~f~~l~~~--~f~~~~Pw~~~Ssvt~----------~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 277 INFQGLIRG--VFLVDLPWIYVSSVTS----------LGRDLLLLHIA 312 (320)
T ss_pred eehhhcccc--ceeccCCceeeecccc----------cCceeeeeehh
Confidence 111111111 1123578899999988 66666654443
No 344
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.87 E-value=2.1e-08 Score=77.67 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=61.1
Q ss_pred EEEEEEe---eCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccc
Q 013007 269 PIEDVFS---IQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 269 ~v~~~~~---~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
.|+++.. +++.|+++++||.+|+|++||.|++...+ ...+|..|... +.++++|.|||++++. ..
T Consensus 2 ~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~----~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~----gl 73 (85)
T cd03689 2 FVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLG----KEVRLSNPQQFFAQDRETVDEAYPGDIIGLV----NP 73 (85)
T ss_pred EEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCC----CEEEeeEeEEEecCCeeEcCEECCCCEEEEE----CC
Confidence 4677777 88999999999999999999999875422 24677777532 4789999999999885 34
Q ss_pred cCCCCCeEEec
Q 013007 342 EDVQRGQVIAK 352 (451)
Q Consensus 342 ~~i~~G~vl~~ 352 (451)
.+++.||+||+
T Consensus 74 ~~~~~Gdtl~~ 84 (85)
T cd03689 74 GNFQIGDTLTE 84 (85)
T ss_pred CCccccCEeeC
Confidence 57889999984
No 345
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.87 E-value=2.9e-08 Score=77.24 Aligned_cols=82 Identities=26% Similarity=0.309 Sum_probs=64.5
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec---ceeccEEecCCeEEEEeccc-cc
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF---KKILDRGEAGDNVGLLLRGL-KR 341 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~---~~~v~~a~aG~~v~l~l~~~-~~ 341 (451)
|.+.|+++..+++.|+++++||.+|+|++||.+++...+ .+.+|..|... +.++++|.|||++++. .++ +.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~----~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l 75 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG----KEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTV 75 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC----CeEEEEEEEEECCCccCCceECCCCEEEEE-cccccc
Confidence 468899999999999999999999999999999886522 24566676533 4689999999999874 222 23
Q ss_pred cCCCCCeEEec
Q 013007 342 EDVQRGQVIAK 352 (451)
Q Consensus 342 ~~i~~G~vl~~ 352 (451)
.++..||+|+.
T Consensus 76 ~~~~~Gdtl~~ 86 (86)
T cd03699 76 KDARVGDTITL 86 (86)
T ss_pred CccccccEeeC
Confidence 57889999973
No 346
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.83 E-value=1e-07 Score=71.78 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=62.0
Q ss_pred CCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccC
Q 013007 264 KPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRED 343 (451)
Q Consensus 264 ~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~ 343 (451)
.|-.+.|...|....+. ++.|+|..|+|++|..+ .+ ..-.+|++|+.+++++++|.+||.|++.+.|.. +
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G---~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~ 72 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DG---RKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--Q 72 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CS---SCEEEEEEEEETTEEESEEETT-EEEEEEET----T
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CC---EEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--c
Confidence 46678888888888888 77779999999999998 12 247899999999999999999999999999855 8
Q ss_pred CCCCeEEe
Q 013007 344 VQRGQVIA 351 (451)
Q Consensus 344 i~~G~vl~ 351 (451)
+..||+|-
T Consensus 73 i~eGDiLy 80 (81)
T PF14578_consen 73 IKEGDILY 80 (81)
T ss_dssp B-TT-EEE
T ss_pred CCCCCEEe
Confidence 99999983
No 347
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.81 E-value=6.4e-08 Score=80.63 Aligned_cols=161 Identities=19% Similarity=0.110 Sum_probs=100.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEE-eeEEEeeeC---CeeEEEEecCChHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIA-TAHVEYETA---KRHYAHVDCPGHAD 140 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~-~~~~~~~~~---~~~i~iiDtPG~~~ 140 (451)
..+|+++|.-++|||.++..|.-.....|... .-|+. ......+++ ...+.|.||.|..+
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~----------------~pTiEDiY~~svet~rgarE~l~lyDTaGlq~ 72 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTEL----------------HPTIEDIYVASVETDRGAREQLRLYDTAGLQG 72 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCcc----------------ccchhhheeEeeecCCChhheEEEeecccccC
Confidence 46999999999999999999974422222110 11111 111222222 34688999999888
Q ss_pred HH-HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH-----HcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhc
Q 013007 141 YV-KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR-----QVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFY 214 (451)
Q Consensus 141 ~~-~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-----~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~ 214 (451)
+- ..-..+++-+|+.+||.|..+...-|-.+.+..-- ...+| ++|..||+|+.++.+....+. ...
T Consensus 73 ~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvp-iVVLaN~rdr~~p~~vd~d~A----~~W--- 144 (198)
T KOG3883|consen 73 GQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVP-IVVLANKRDRAEPREVDMDVA----QIW--- 144 (198)
T ss_pred chhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcccccccc-EEEEechhhcccchhcCHHHH----HHH---
Confidence 83 33445667799999999987744333333332111 22577 788999999986443322211 111
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCc
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPER 260 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~ 260 (451)
...+.+..+.+++... ..+.+.+.+|...+..|..
T Consensus 145 -a~rEkvkl~eVta~dR----------~sL~epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 145 -AKREKVKLWEVTAMDR----------PSLYEPFTYLASRLHQPQS 179 (198)
T ss_pred -HhhhheeEEEEEeccc----------hhhhhHHHHHHHhccCCcc
Confidence 1124577889999876 7788888888877765543
No 348
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.79 E-value=5.8e-08 Score=74.65 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=60.9
Q ss_pred eeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec----ceeccEEecCCeEEEEeccccc
Q 013007 266 FLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF----KKILDRGEAGDNVGLLLRGLKR 341 (451)
Q Consensus 266 ~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l~~~~~ 341 (451)
|...|+++..++. |.++++||.+|+|++||.|++...+ .+.+|..|... ..+++++.|||++++. ++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~----~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~--g~-- 71 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTG----KKVRVPRLVRMHSNEMEEVEEAGAGDICAIF--GI-- 71 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCC----CEEEEeEEEEEeCCCceEccEECCCCEEEEE--CC--
Confidence 3567888888876 9999999999999999999886532 35677777532 4789999999999863 43
Q ss_pred cCCCCCeEEe
Q 013007 342 EDVQRGQVIA 351 (451)
Q Consensus 342 ~~i~~G~vl~ 351 (451)
+ ++.||+|+
T Consensus 72 ~-~~~Gdtl~ 80 (81)
T cd04091 72 D-CASGDTFT 80 (81)
T ss_pred C-cccCCEec
Confidence 3 88999996
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.78 E-value=1e-07 Score=98.09 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=69.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH---
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--- 141 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--- 141 (451)
.++|+++|.+|+||||++|.|++. ..+... ....++|. .........+..+.+|||||..+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe------kvf~vs--------s~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~d 182 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE------VKFSTD--------AFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASD 182 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc------cccccc--------CCCCCceE-EEEEEEEECCceEEEEECCCCCccccc
Confidence 468999999999999999999854 111110 01112222 223333446788999999996542
Q ss_pred -------HHHHHHhcc--cCCEEEEEEeCCCCCC-ccHHHHHHHHH-HcC---CCeEEEEEeeccCCC
Q 013007 142 -------VKNMITGAA--QMDGGILVVSAPDGPM-PQTKEHILLAR-QVG---VPSLVCFLNKVDLVE 195 (451)
Q Consensus 142 -------~~~~~~~~~--~~d~~ilVvda~~g~~-~~t~~~l~~~~-~~~---ip~iivviNK~D~~~ 195 (451)
.+.....+. .+|++|+|+.....-. ......++.+. .+| .++.|||+|..|..+
T Consensus 183 q~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 183 QSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 222222333 4798888886543211 12223333332 223 467889999999985
No 350
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.75 E-value=6.4e-08 Score=80.77 Aligned_cols=160 Identities=17% Similarity=0.227 Sum_probs=109.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
.-.++|+++|....|||||+-...+...+.. -+...|+...-..+.....+..+.+||..|+++|.
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~--------------~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~ 83 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEE--------------YTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFI 83 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHH--------------HHHHhCccceeeEEEecceEEEEEEEecCCcHhhh
Confidence 3468999999999999999988765422211 11222333333333444445567899999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHcC---CCeEEEEEeeccCCC--hHHHHHHHHHHHHHHHHhcCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG---VPSLVCFLNKVDLVE--DEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~~---ip~iivviNK~D~~~--~~~~~~~~~~~~~~~l~~~~~ 216 (451)
...--+...+-+++++.|-+.... ...++..+.++.++ +| + +|.+|-|+.- +++..+.+..+.+.+.+..
T Consensus 84 n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-i-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~m-- 159 (205)
T KOG1673|consen 84 NMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-I-LVGTKYDLFIDLPPELQETISRQARKYAKVM-- 159 (205)
T ss_pred ccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-E-EeccchHhhhcCCHHHHHHHHHHHHHHHHHh--
Confidence 777666667788899999887543 34456667777664 67 4 7899999653 5566666777777777764
Q ss_pred CCCCCCeeeccccccccCCCcccchhhHHHHHHHHHh
Q 013007 217 PGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 217 ~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
+.+.+.+|+-+. -++...+..+..
T Consensus 160 ---nAsL~F~Sts~s----------INv~KIFK~vlA 183 (205)
T KOG1673|consen 160 ---NASLFFCSTSHS----------INVQKIFKIVLA 183 (205)
T ss_pred ---CCcEEEeecccc----------ccHHHHHHHHHH
Confidence 467899999877 566666655543
No 351
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4.4e-08 Score=82.83 Aligned_cols=113 Identities=20% Similarity=0.194 Sum_probs=79.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
+..-++.++|--|+|||||+..|-..- ++. .--|...+.-+....+.+++-+|..||..-.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDr-------------l~q------hvPTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDR-------------LGQ------HVPTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccc-------------ccc------cCCCcCCChHHheecCceEEEEccccHHHHH
Confidence 345599999999999999999885210 000 0112222222344567789999999999988
Q ss_pred HHHHHhcccCCEEEEEEeCCCC-CCccHHHHHHHHH----HcCCCeEEEEEeeccCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDG-PMPQTKEHILLAR----QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g-~~~~t~~~l~~~~----~~~ip~iivviNK~D~~~ 195 (451)
.-...++..+|+++++||+-+. .....++++..+. ...+| +++..||+|...
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp-~lilgnKId~p~ 135 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVP-FLILGNKIDIPY 135 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCc-ceeecccccCCC
Confidence 8888889999999999999873 3344455554443 24788 567999999986
No 352
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=8.5e-07 Score=85.75 Aligned_cols=144 Identities=19% Similarity=0.297 Sum_probs=91.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHA 139 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~ 139 (451)
+.-.+++.++|..|.|||||+|.|........+ ..........+..++.......+-++ .+++++||||..
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~-------~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfG 90 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNR-------EVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFG 90 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCc-------ccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCc
Confidence 344689999999999999999999865221110 01112222222344444444444443 467899999955
Q ss_pred H-------------HHHHHHH-h-----------cc--cCCEEEEEEeCC-CCCCccHHHHHHHHHHcCCCeEEEEEeec
Q 013007 140 D-------------YVKNMIT-G-----------AA--QMDGGILVVSAP-DGPMPQTKEHILLARQVGVPSLVCFLNKV 191 (451)
Q Consensus 140 ~-------------~~~~~~~-~-----------~~--~~d~~ilVvda~-~g~~~~t~~~l~~~~~~~ip~iivviNK~ 191 (451)
| |+..... + .. ..+++|+.|..+ +|+.+.+.+.++.+.. .+. +|-||-|.
T Consensus 91 D~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vN-iIPVI~Ka 168 (366)
T KOG2655|consen 91 DAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVN-LIPVIAKA 168 (366)
T ss_pred ccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-ccc-ccceeecc
Confidence 5 2211111 1 11 467899999876 4788888887766554 455 77899999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhcC
Q 013007 192 DLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 192 D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
|...+++ +..++..+.+.++...
T Consensus 169 D~lT~~E-l~~~K~~I~~~i~~~n 191 (366)
T KOG2655|consen 169 DTLTKDE-LNQFKKRIRQDIEEHN 191 (366)
T ss_pred ccCCHHH-HHHHHHHHHHHHHHcC
Confidence 9998666 4556677777777653
No 353
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=3.9e-07 Score=81.85 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=86.8
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEee--EEEeeeCC--eeEEEEecCCh
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATA--HVEYETAK--RHYAHVDCPGH 138 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~--~~~~~~~~--~~i~iiDtPG~ 138 (451)
.-.+||.++|.+|.|||||+|.|.....-.... +...++..+ .|.... .-..+..+ .++++|||||.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~--------~~~~~~p~p-kT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSS--------SDNSAEPIP-KTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccC--------CCcccCccc-ceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 346899999999999999999998654322111 111111111 122222 11222222 46789999994
Q ss_pred HH---------------------HHHHHHHhcc-------cCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEe
Q 013007 139 AD---------------------YVKNMITGAA-------QMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLN 189 (451)
Q Consensus 139 ~~---------------------~~~~~~~~~~-------~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviN 189 (451)
.| |+++-+...+ ...++++.|.++. .+.+-+.+.+..+... -.+|-||-
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v--vNvvPVIa 192 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV--VNVVPVIA 192 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh--heeeeeEe
Confidence 33 4444333322 3568899998874 5667777877665542 33678899
Q ss_pred eccCCChHHHHHHHHHHHHHHHHhcCC
Q 013007 190 KVDLVEDEELLELVEMELRELLSFYKF 216 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~~~~l~~~~~ 216 (451)
|.|...-+++ .+.++.+++-++..++
T Consensus 193 kaDtlTleEr-~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 193 KADTLTLEER-SAFKQRIRKELEKHGI 218 (336)
T ss_pred ecccccHHHH-HHHHHHHHHHHHhcCc
Confidence 9998875554 3456677777777665
No 354
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.66 E-value=1.3e-07 Score=83.28 Aligned_cols=127 Identities=20% Similarity=0.310 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeE-------------------EE-----
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH-------------------VE----- 122 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~-------------------~~----- 122 (451)
-+.++|+.|+||||+++.+...+...|+....+ .+|...+.-....+++... +.
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vV--NLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVV--NLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred eEEEEccCCCCcchHHHHHHHHHHhhCceeEEe--ecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 567999999999999999988877777765443 2333333333333333210 00
Q ss_pred ---e-----eeC--CeeEEEEecCC------hHHHHHHHHHhcccCC---EEEEEEeCCCC-----CCccHHHHHHHHHH
Q 013007 123 ---Y-----ETA--KRHYAHVDCPG------HADYVKNMITGAAQMD---GGILVVSAPDG-----PMPQTKEHILLARQ 178 (451)
Q Consensus 123 ---~-----~~~--~~~i~iiDtPG------~~~~~~~~~~~~~~~d---~~ilVvda~~g-----~~~~t~~~l~~~~~ 178 (451)
+ +.. ...+.++|+|| |..-+++.++.+.+-+ ++++++|+.-= ........+..+..
T Consensus 83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~ 162 (273)
T KOG1534|consen 83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMIS 162 (273)
T ss_pred HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHH
Confidence 0 111 34688999999 4556777777776633 56777776421 11223334445556
Q ss_pred cCCCeEEEEEeeccCCCh
Q 013007 179 VGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 179 ~~ip~iivviNK~D~~~~ 196 (451)
+.+|++ =|++|||+...
T Consensus 163 lE~P~I-NvlsKMDLlk~ 179 (273)
T KOG1534|consen 163 LEVPHI-NVLSKMDLLKD 179 (273)
T ss_pred hcCcch-hhhhHHHHhhh
Confidence 789976 79999999864
No 355
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.66 E-value=2.4e-07 Score=82.83 Aligned_cols=117 Identities=21% Similarity=0.302 Sum_probs=80.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-eeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-RHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-~~i~iiDtPG~~~~~~ 143 (451)
.++|.++|.+|+|||++=..+..... ....+..|-|++..+.+...-+ ..+++||+.|++.|++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~---------------a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI---------------ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh---------------hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 35999999999999998777653211 0111233677777655554433 5678999999999988
Q ss_pred HHHHh-----cccCCEEEEEEeCCCCCCccHHHHHHHH----HHc-CCCeEEEEEeeccCCCh
Q 013007 144 NMITG-----AAQMDGGILVVSAPDGPMPQTKEHILLA----RQV-GVPSLVCFLNKVDLVED 196 (451)
Q Consensus 144 ~~~~~-----~~~~d~~ilVvda~~g~~~~t~~~l~~~----~~~-~ip~iivviNK~D~~~~ 196 (451)
+..+. .+..++.++|.|+.......+..+...+ ... -.-++.+.+.|||+...
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 87763 5678999999999876555554444332 222 12235678999999873
No 356
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.65 E-value=6.8e-08 Score=91.48 Aligned_cols=80 Identities=24% Similarity=0.218 Sum_probs=52.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC-----------------eeE
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK-----------------RHY 130 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~-----------------~~i 130 (451)
|+++|.+|+|||||+|+|++.....+.. .+.|++.....+...+ ..+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~----------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc----------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 5899999999999999999653322211 1333333222121111 258
Q ss_pred EEEecCChH-------HHHHHHHHhcccCCEEEEEEeCCC
Q 013007 131 AHVDCPGHA-------DYVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 131 ~iiDtPG~~-------~~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
.++|+||.. .........++.+|++++|||+..
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 999999932 244455666788999999999864
No 357
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.65 E-value=2.2e-07 Score=80.99 Aligned_cols=89 Identities=24% Similarity=0.234 Sum_probs=64.8
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
+.+..+|++++|+|++++...+..+....+...+.| +++|+||+|+.+.++. +. ...+.+.. ..+++++
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~~~-~~----~~~~~~~~-----~~~~~~i 76 (156)
T cd01859 8 RIIKESDVVLEVLDARDPELTRSRKLERYVLELGKK-LLIVLNKADLVPKEVL-EK----WKSIKESE-----GIPVVYV 76 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCc-EEEEEEhHHhCCHHHH-HH----HHHHHHhC-----CCcEEEE
Confidence 344569999999999887776766666666666888 6789999999753221 11 11222221 2579999
Q ss_pred cccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
||+++ .|+++|++.|.+.+|
T Consensus 77 Sa~~~----------~gi~~L~~~l~~~~~ 96 (156)
T cd01859 77 SAKER----------LGTKILRRTIKELAK 96 (156)
T ss_pred Ecccc----------ccHHHHHHHHHHHHh
Confidence 99998 899999999998876
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=1.1e-06 Score=85.49 Aligned_cols=146 Identities=17% Similarity=0.149 Sum_probs=81.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch---------hhhhcCceEEeeEE-------------E
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---------EEKKRGITIATAHV-------------E 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---------~e~~~g~t~~~~~~-------------~ 122 (451)
...|+++|.+|+||||++..|.......|....... .|... ....+++.+..... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~--~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA--GDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe--cCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999999988776665433322 12211 12233443322100 0
Q ss_pred eeeCCeeEEEEecCChHHH-------HHHHHHhc-----ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEee
Q 013007 123 YETAKRHYAHVDCPGHADY-------VKNMITGA-----AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNK 190 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~-------~~~~~~~~-----~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK 190 (451)
....++.+.||||||.... ++.+...+ ...+..++|+|++.|..... .........++. - +++||
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~~~~~~~-g-iIlTK 268 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFHEAVGLT-G-IILTK 268 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHHhhCCCC-E-EEEEC
Confidence 0124568999999995331 22222221 24678999999996532222 222222334555 3 57999
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecc
Q 013007 191 VDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (451)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~S 227 (451)
+|....-. .+-..+..+ ..|+.+++
T Consensus 269 lD~t~~~G-------~~l~~~~~~-----~~Pi~~v~ 293 (318)
T PRK10416 269 LDGTAKGG-------VVFAIADEL-----GIPIKFIG 293 (318)
T ss_pred CCCCCCcc-------HHHHHHHHH-----CCCEEEEe
Confidence 99664322 112223333 36888887
No 359
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=8.5e-07 Score=85.64 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe-------e----eCCeeEEEE
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-------E----TAKRHYAHV 133 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-------~----~~~~~i~ii 133 (451)
.++++++|-||+|||||+|+|+....+.+...| +..|...|+..-.. ..+ . .-...+.|+
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--------~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~v 72 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--------CTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFV 72 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCc--------ccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEE
Confidence 368999999999999999999976544333332 22222222221110 000 0 011347899
Q ss_pred ecCChHH-------HHHHHHHhcccCCEEEEEEeCCC
Q 013007 134 DCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 134 DtPG~~~-------~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
|.+|.-. .-...+..++.+|+++.|||+..
T Consensus 73 DIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 73 DIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred EecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 9999322 23334444678999999999874
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.53 E-value=5.2e-07 Score=81.44 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=67.2
Q ss_pred CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHH-HHHHhc
Q 013007 136 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELR-ELLSFY 214 (451)
Q Consensus 136 PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~-~~l~~~ 214 (451)
|.+..|.......+..+|++++|+|+++.......+. .....+.| +++|+||+|+.+.+...+.+..... ...+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l--~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRL--RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL 95 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhH--HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence 4444467777777889999999999987543333332 12234667 6789999999753222221211110 111222
Q ss_pred CCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 215 KFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 215 ~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
++ ...+++++||+++ +|+++|++.|.+.+|
T Consensus 96 ~~--~~~~i~~vSA~~~----------~gi~eL~~~l~~~l~ 125 (190)
T cd01855 96 GL--KPKDVILISAKKG----------WGVEELINAIKKLAK 125 (190)
T ss_pred CC--CcccEEEEECCCC----------CCHHHHHHHHHHHhh
Confidence 22 1236899999998 899999999988765
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.53 E-value=9.9e-07 Score=83.93 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc---hh------hhhcCceEEeeEE-----E--------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA---PE------EKKRGITIATAHV-----E-------- 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~------e~~~g~t~~~~~~-----~-------- 122 (451)
...|+++|++|+||||++..|.......|+...... .|.. .. ....|+.+..... .
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~--~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA--GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe--CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 468899999999999999999887776665443332 2221 01 1222332211000 0
Q ss_pred eeeCCeeEEEEecCChHHHHHH-------HHHhcc-----cCCEEEEEEeCCCCCCccHHHHH-HHHHHcCCCeEEEEEe
Q 013007 123 YETAKRHYAHVDCPGHADYVKN-------MITGAA-----QMDGGILVVSAPDGPMPQTKEHI-LLARQVGVPSLVCFLN 189 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~~~~~-------~~~~~~-----~~d~~ilVvda~~g~~~~t~~~l-~~~~~~~ip~iivviN 189 (451)
....++.+.||||||....-.. +..... .+|..+||+|+..+- ...... .+.+..++.. +++|
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~~~g--~IlT 225 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVGLTG--IILT 225 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCCCCE--EEEE
Confidence 0124578999999996542222 112221 389999999997532 222222 3333456553 5799
Q ss_pred eccCCCh
Q 013007 190 KVDLVED 196 (451)
Q Consensus 190 K~D~~~~ 196 (451)
|+|....
T Consensus 226 KlDe~~~ 232 (272)
T TIGR00064 226 KLDGTAK 232 (272)
T ss_pred ccCCCCC
Confidence 9998764
No 362
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=1.4e-07 Score=81.60 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=90.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEee-e-CCeeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYE-T-AKRHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~-~-~~~~i~iiDtPG~~~ 140 (451)
.+.++++++|..+.||||++++.+....+...... -|... ....+. . ...+++.|||.|++.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at--------------~Gv~~--~pl~f~tn~g~irf~~wdtagqEk 71 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPAT--------------LGVEV--HPLLFDTNRGQIRFNVWDTAGQEK 71 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCc--------------ceeEE--eeeeeecccCcEEEEeeeccccee
Confidence 46789999999999999999988643222111000 02222 222222 2 236789999999999
Q ss_pred HHHHHHHhcccCCEEEEEEeCCCCCCccH--HHHHHHHHH-cCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 141 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQ-VGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 141 ~~~~~~~~~~~~d~~ilVvda~~g~~~~t--~~~l~~~~~-~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
|......+.-+..+|+++.|......-+. +.|-.+++. .++| ++++.||.|....+. +..--.+.+
T Consensus 72 ~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~r~~-----k~k~v~~~r----- 140 (216)
T KOG0096|consen 72 KGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIP-IVLCGNKVDIKARKV-----KAKPVSFHR----- 140 (216)
T ss_pred ecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCC-eeeeccceecccccc-----ccccceeee-----
Confidence 98877777778899999999887554332 333344443 3578 889999999765321 111111111
Q ss_pred CCCCCeeecccccc
Q 013007 218 GDEIPIIRGSATSA 231 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g 231 (451)
..+..++.+||+++
T Consensus 141 kknl~y~~iSaksn 154 (216)
T KOG0096|consen 141 KKNLQYYEISAKSN 154 (216)
T ss_pred cccceeEEeecccc
Confidence 24577899999987
No 363
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=98.52 E-value=5.2e-07 Score=81.34 Aligned_cols=65 Identities=25% Similarity=0.312 Sum_probs=53.2
Q ss_pred CeeEEEEec-CChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 127 KRHYAHVDC-PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDt-PG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
...+.++|| +|.+.|-+-+. ..+|.+|+|+|++.......++.-+++..++++++.+|+||+|..
T Consensus 133 ~~e~VivDtEAGiEHfgRg~~---~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRGTI---EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhccccc---cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 467899999 88888877663 459999999999876666667777888889988899999999954
No 364
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=98.48 E-value=1.5e-06 Score=68.63 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=60.9
Q ss_pred eEEEEEEEeeC-CCceEEEEEEEeeeeecCCEEEEecccC-----CCCceeEEEEEeec----ceeccEEecCCeEEEEe
Q 013007 267 LMPIEDVFSIQ-GRGTVATGRVEQGTIKVGEEVEVLGLTQ-----GPSLKTTVTGVEMF----KKILDRGEAGDNVGLLL 336 (451)
Q Consensus 267 ~~~v~~~~~~~-~~G~v~~g~v~sG~l~~gd~v~i~p~~~-----~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~l 336 (451)
.+.|+++...+ +.|.++++||.+|+|+.||.+++..... ....+.+|..|... ..++++|.|||+|++.
T Consensus 2 v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~- 80 (93)
T cd03700 2 VMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV- 80 (93)
T ss_pred eEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE-
Confidence 45688888888 8899999999999999999998765221 01234677777543 3789999999999885
Q ss_pred ccccccCCCCCeEEe
Q 013007 337 RGLKREDVQRGQVIA 351 (451)
Q Consensus 337 ~~~~~~~i~~G~vl~ 351 (451)
++ .+++.|++.+
T Consensus 81 -g~--~~~~~g~~~~ 92 (93)
T cd03700 81 -GL--DQLKSGTTAT 92 (93)
T ss_pred -CC--ccCceEeEec
Confidence 33 4577787654
No 365
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.47 E-value=1.3e-06 Score=87.50 Aligned_cols=125 Identities=19% Similarity=0.192 Sum_probs=73.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch---h------hhhcCceEEeeEEE-------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---E------EKKRGITIATAHVE------------- 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~------e~~~g~t~~~~~~~------------- 122 (451)
...|+++|..|+||||++..|.......|....... .|... . ....++.+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~--~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC--ADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--CcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 468999999999999999999887776676444332 22211 0 11122322211000
Q ss_pred eeeCCeeEEEEecCChHH----HHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 123 YETAKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
+...++.+.||||||... .+.++... ...+|-++||+|+..|-.. ...+.... ..++. - +++||+|...
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~-g-~IlTKlD~~a 253 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVG-S-VIITKLDGHA 253 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCc-E-EEEECccCCC
Confidence 011356899999999443 34444433 2347889999999865332 22233332 23454 3 6799999865
No 366
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.47 E-value=8.8e-07 Score=89.18 Aligned_cols=116 Identities=22% Similarity=0.192 Sum_probs=74.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYV 142 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~ 142 (451)
....+|+++|..|+|||+|+-+|.....- +.-+. +-.-+++-. .+..+.....++||+-..+-.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~------------~~VP~-rl~~i~IPa---dvtPe~vpt~ivD~ss~~~~~ 70 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFV------------DAVPR-RLPRILIPA---DVTPENVPTSIVDTSSDSDDR 70 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcc------------ccccc-cCCccccCC---ccCcCcCceEEEecccccchh
Confidence 44689999999999999999999854211 10000 111233321 122223347899998766655
Q ss_pred HHHHHhcccCCEEEEEEeCCCCC--CccHHHHHHHHHHc-----CCCeEEEEEeeccCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGP--MPQTKEHILLARQV-----GVPSLVCFLNKVDLVE 195 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~--~~~t~~~l~~~~~~-----~ip~iivviNK~D~~~ 195 (451)
......++.||++.+|.+.++.. ..-+..+|=+.+.. ++| +|+|.||+|...
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~~~ 129 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETP-VILVGNKSDNGD 129 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCC-EEEEeeccCCcc
Confidence 55667788999999999887622 22222233334433 578 889999999876
No 367
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.47 E-value=6.9e-07 Score=78.01 Aligned_cols=90 Identities=19% Similarity=0.077 Sum_probs=61.4
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCe
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPI 223 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv 223 (451)
..++..+|.+++|+|++++...+.......+... ++| +|+|+||+|+.++++. ...+..+-+.+ ..-+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl~~~~~~----~~~~~~~~~~~-----~~~~ 72 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKH-LIFVLNKCDLVPTWVT----ARWVKILSKEY-----PTIA 72 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCC-EEEEEEchhcCCHHHH----HHHHHHHhcCC-----cEEE
Confidence 4567889999999999987666666666666543 377 6689999999864331 11222222211 1225
Q ss_pred eeccccccccCCCcccchhhHHHHHHHHHhhC
Q 013007 224 IRGSATSALQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 224 i~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
+++||+.+ .++++|++.+.+++
T Consensus 73 ~~iSa~~~----------~~~~~L~~~l~~~~ 94 (157)
T cd01858 73 FHASINNP----------FGKGSLIQLLRQFS 94 (157)
T ss_pred EEeecccc----------ccHHHHHHHHHHHH
Confidence 88999988 88889999887653
No 368
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.47 E-value=9.9e-07 Score=78.19 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred cCChHH-HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 135 CPGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 135 tPG~~~-~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
-|||.. ...++...+..+|.+++|+|++++......+.+..+ .+.| +++|+||+|+.++++. . ...++++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~-~ilVlNK~Dl~~~~~~-~----~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKP-RIIVLNKADLADPKKT-K----KWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCC-EEEEEehhhcCChHHH-H----HHHHHHHh
Confidence 588754 677788889999999999999887665554443332 3567 5689999999753221 1 11122332
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
. ..+++++||+++ .|+++|++.+.+.+|
T Consensus 74 ~-----~~~vi~iSa~~~----------~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 K-----GEKVLFVNAKSG----------KGVKKLLKAAKKLLK 101 (171)
T ss_pred c-----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 2 245899999988 889999999988765
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.47 E-value=2.3e-06 Score=75.95 Aligned_cols=125 Identities=20% Similarity=0.227 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchh---h------hhcCceEEeeEEE-------------ee
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE---E------KKRGITIATAHVE-------------YE 124 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~---e------~~~g~t~~~~~~~-------------~~ 124 (451)
.+++.|.+|+||||+...|.....+.|....... .|.... + ...|+.+...... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~--~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA--ADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE--cCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999877766665433322 121110 0 1112222111000 01
Q ss_pred eCCeeEEEEecCChH----HHHHHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 125 TAKRHYAHVDCPGHA----DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 125 ~~~~~i~iiDtPG~~----~~~~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
..++.+.++||||.. +....+.... ...|.+++|+|+..+. ........+....++. -+++||+|....
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~-~~~~~~~~~~~~~~~~--~viltk~D~~~~ 154 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ-DAVNQAKAFNEALGIT--GVILTKLDGDAR 154 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh-HHHHHHHHHHhhCCCC--EEEEECCcCCCC
Confidence 235668999999975 3333332222 2489999999996432 2222333334455654 357899998763
No 370
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.45 E-value=1e-06 Score=79.02 Aligned_cols=128 Identities=23% Similarity=0.377 Sum_probs=73.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc--CCchhh---------------hhcCceEEeeE---------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI--DKAPEE---------------KKRGITIATAH--------- 120 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~--d~~~~e---------------~~~g~t~~~~~--------- 120 (451)
-.+++|++|+||||.++-+.......|+....++-.. |..+-+ .+.|...+.+.
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~~ 83 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLEA 83 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHHh
Confidence 3579999999999999999888888888665543111 111101 11111111100
Q ss_pred -E-----EeeeCCeeEEEEecCCh------HHHHHHHHHhcccCCEEEEEEeCCCCC---Cc-----cHHHHHHHHHHcC
Q 013007 121 -V-----EYETAKRHYAHVDCPGH------ADYVKNMITGAAQMDGGILVVSAPDGP---MP-----QTKEHILLARQVG 180 (451)
Q Consensus 121 -~-----~~~~~~~~i~iiDtPG~------~~~~~~~~~~~~~~d~~ilVvda~~g~---~~-----~t~~~l~~~~~~~ 180 (451)
. .++.....+.++|+||+ .+-.....+.+...|+-+.+|.-.+.. .+ ...-.+.-+..+.
T Consensus 84 ~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~me 163 (290)
T KOG1533|consen 84 NIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHME 163 (290)
T ss_pred hhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhc
Confidence 0 01223567899999994 445666777777777655555433321 11 1112223334568
Q ss_pred CCeEEEEEeeccCCC
Q 013007 181 VPSLVCFLNKVDLVE 195 (451)
Q Consensus 181 ip~iivviNK~D~~~ 195 (451)
.||+ =|+.|+|+..
T Consensus 164 lphV-NvlSK~Dl~~ 177 (290)
T KOG1533|consen 164 LPHV-NVLSKADLLK 177 (290)
T ss_pred ccch-hhhhHhHHHH
Confidence 8986 7899999874
No 371
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.45 E-value=1.5e-06 Score=78.77 Aligned_cols=85 Identities=22% Similarity=0.204 Sum_probs=60.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY-- 141 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~-- 141 (451)
..-+|+++|.+.+|||||+..++....+.....| .|...-.....+++..++++|.||..+=
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeF----------------TTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEF----------------TTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceee----------------eEEEeecceEEecCceEEEecCcccccccc
Confidence 4569999999999999999999866444333222 2333333345677889999999995431
Q ss_pred -----HHHHHHhcccCCEEEEEEeCCCC
Q 013007 142 -----VKNMITGAAQMDGGILVVSAPDG 164 (451)
Q Consensus 142 -----~~~~~~~~~~~d~~ilVvda~~g 164 (451)
-+.++..++.||.+++|+||+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 23344556679999999999864
No 372
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=2e-06 Score=84.72 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCc---hhhh------hcCceEEeeEEE-------eeeCC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKA---PEEK------KRGITIATAHVE-------YETAK 127 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~---~~e~------~~g~t~~~~~~~-------~~~~~ 127 (451)
...++++|++|+||||++..|..... ..|....... ..|.. ..|+ ..|+.+...... ....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li-t~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL-TTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE-ecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 45899999999999999999987654 3343211111 12221 1121 113333221110 12346
Q ss_pred eeEEEEecCChH---HHHHHHHHhccc---CCEEEEEEeCCCCCCccHHHHHHHHHHc--------CCCeEEEEEeeccC
Q 013007 128 RHYAHVDCPGHA---DYVKNMITGAAQ---MDGGILVVSAPDGPMPQTKEHILLARQV--------GVPSLVCFLNKVDL 193 (451)
Q Consensus 128 ~~i~iiDtPG~~---~~~~~~~~~~~~---~d~~ilVvda~~g~~~~t~~~l~~~~~~--------~ip~iivviNK~D~ 193 (451)
+.+.||||||.. ++..+.+..+.. .+-.+||++++.+....+.....+.... ++.. +++||+|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~--~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAG--CILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCE--EEEecccc
Confidence 789999999955 444444444433 4456999999886654443333333332 2343 46899998
Q ss_pred CC
Q 013007 194 VE 195 (451)
Q Consensus 194 ~~ 195 (451)
..
T Consensus 294 t~ 295 (374)
T PRK14722 294 AS 295 (374)
T ss_pred CC
Confidence 75
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=98.43 E-value=1.5e-06 Score=84.76 Aligned_cols=125 Identities=22% Similarity=0.206 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch---hh------hhcCceEEeeEE-------------E
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---EE------KKRGITIATAHV-------------E 122 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~-------------~ 122 (451)
...|+++|.+|+||||++..|...+...|....... .|... .+ ..-|+.+..... .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~--~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA--GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec--CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 468999999999999999999987776664333221 22110 01 111222211100 0
Q ss_pred eeeCCeeEEEEecCChH----HHHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHH-HHcCCCeEEEEEeeccCCC
Q 013007 123 YETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~-~~~~ip~iivviNK~D~~~ 195 (451)
....+..+.||||||.. +++.++..- ....|..+||+|+..|- ...+.+... ...++. - +++||+|...
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~~-g-iIlTKlD~~~ 293 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGID-G-VILTKVDADA 293 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCCC-E-EEEeeecCCC
Confidence 01234579999999954 333333222 23579999999997642 223333322 345676 3 5799999875
No 374
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=89.31 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=91.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeee-------------eccCCchhhhhcCceEE-----------
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAF-------------DEIDKAPEEKKRGITIA----------- 117 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~-------------~~~d~~~~e~~~g~t~~----------- 117 (451)
..+.+|++.|.+++||||++|+++....- .|-+..... ...+. .+|...-.|+.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~-s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEG-SEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCC-CcccccHHHHhHHHHhcCcccc
Confidence 45789999999999999999999865321 111111000 00010 00100001111
Q ss_pred -----eeEEEeeeC-----CeeEEEEecCCh---HHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeE
Q 013007 118 -----TAHVEYETA-----KRHYAHVDCPGH---ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSL 184 (451)
Q Consensus 118 -----~~~~~~~~~-----~~~i~iiDtPG~---~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~i 184 (451)
...+.|+.+ ...+.++|.||. ..+........-.+|+.|||+.|.+..+...+..+..+.. +.|.+
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-~Kpni 264 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-EKPNI 264 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc-cCCcE
Confidence 112223222 125789999993 4455666666678999999999977555444555554444 47888
Q ss_pred EEEEeeccCCCh-HHHHHHHHHHHHHHHHhcCCCCCCCCeeecccc
Q 013007 185 VCFLNKVDLVED-EELLELVEMELRELLSFYKFPGDEIPIIRGSAT 229 (451)
Q Consensus 185 ivviNK~D~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~ 229 (451)
.++.||.|...+ ++-.+.+..++.++- -..+....--++++||+
T Consensus 265 FIlnnkwDasase~ec~e~V~~Qi~eL~-v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 265 FILNNKWDASASEPECKEDVLKQIHELS-VVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEechhhhhcccHHHHHHHHHHHHhcC-cccHhhhcCeeEEEecc
Confidence 888999998763 444455555544221 00011112247888854
No 375
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=4.7e-06 Score=79.48 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=85.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh---cCccce--eeeeccCCchhhhhcCceEEee-EEEee---------------
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAE---EGKAKA--IAFDEIDKAPEEKKRGITIATA-HVEYE--------------- 124 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~---~g~~~~--~~~~~~d~~~~e~~~g~t~~~~-~~~~~--------------- 124 (451)
.-|.++|.-..||||+++.|+..... .|.... .....|.-.+++...|.+.-.. ...|.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c 138 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC 138 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence 47899999999999999999865322 121111 1111233334444445444332 11110
Q ss_pred --eC---CeeEEEEecCChHH-----------HHHHHHHhcccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEE
Q 013007 125 --TA---KRHYAHVDCPGHAD-----------YVKNMITGAAQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCF 187 (451)
Q Consensus 125 --~~---~~~i~iiDtPG~~~-----------~~~~~~~~~~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivv 187 (451)
.. -..++|+||||... |..-..=.+..+|.++|+.|+.. .+...+.+.+..++...-+ +=||
T Consensus 139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Edk-iRVV 217 (532)
T KOG1954|consen 139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDK-IRVV 217 (532)
T ss_pred hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcce-eEEE
Confidence 01 13689999999433 33333333557999999999976 5677888888888877655 5578
Q ss_pred EeeccCCChHHHHH
Q 013007 188 LNKVDLVEDEELLE 201 (451)
Q Consensus 188 iNK~D~~~~~~~~~ 201 (451)
+||.|.++.++...
T Consensus 218 LNKADqVdtqqLmR 231 (532)
T KOG1954|consen 218 LNKADQVDTQQLMR 231 (532)
T ss_pred eccccccCHHHHHH
Confidence 99999998766443
No 376
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.39 E-value=2.1e-06 Score=82.19 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=70.2
Q ss_pred cCChHH-HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHh
Q 013007 135 CPGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 135 tPG~~~-~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
-|||.. ..+++...+..+|++++|+|+..+...........+ .+.| +|+|+||+|+.+.++. + ...+.++.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp-~IiVlNK~DL~~~~~~-~----~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKP-RLIVLNKADLADPAVT-K----QWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCC-EEEEEEccccCCHHHH-H----HHHHHHHH
Confidence 489765 567777888999999999999877665554444444 2566 6789999999753221 1 11222332
Q ss_pred cCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCC
Q 013007 214 YKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPD 257 (451)
Q Consensus 214 ~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~ 257 (451)
. ..+++++||.++ .++.+|++.+.+.++.
T Consensus 76 ~-----~~~vi~iSa~~~----------~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 K-----GIKALAINAKKG----------KGVKKIIKAAKKLLKE 104 (276)
T ss_pred c-----CCeEEEEECCCc----------ccHHHHHHHHHHHHHH
Confidence 2 246899999988 8899999988887653
No 377
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.38 E-value=7.1e-08 Score=83.07 Aligned_cols=159 Identities=16% Similarity=0.106 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeC-CeeEEEEecCChHHHHH
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA-KRHYAHVDCPGHADYVK 143 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~-~~~i~iiDtPG~~~~~~ 143 (451)
..++.++|.-++|||+++.+.........+...+ |.........|+.. -.++.+||..|+++|-.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI--------------gvdfalkVl~wdd~t~vRlqLwdIagQerfg~ 90 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI--------------GVDFALKVLQWDDKTIVRLQLWDIAGQERFGN 90 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHHHHHHHH--------------hHHHHHHHhccChHHHHHHHHhcchhhhhhcc
Confidence 3689999999999999999987664433222211 11111222222211 13567999999999988
Q ss_pred HHHHhcccCCEEEEEEeCCCCCCccHHHHHH-HHH-----HcC--CCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcC
Q 013007 144 NMITGAAQMDGGILVVSAPDGPMPQTKEHIL-LAR-----QVG--VPSLVCFLNKVDLVEDEELLELVEMELRELLSFYK 215 (451)
Q Consensus 144 ~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~-~~~-----~~~--ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~ 215 (451)
.+.-+++.+.++.+|+|.+.......-..|. -+. -.| +| +|+.-||||+... ...+-..++.++.++.|
T Consensus 91 mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~-~vllankCd~e~~--a~~~~~~~~d~f~keng 167 (229)
T KOG4423|consen 91 MTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQEKS--AKNEATRQFDNFKKENG 167 (229)
T ss_pred eEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcch-heeccchhccChH--hhhhhHHHHHHHHhccC
Confidence 8888888999999999998755433222221 111 123 45 6688899998752 22223346778888888
Q ss_pred CCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 216 FPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
+ .-++.+|++.+ .+++|..+.|.+.
T Consensus 168 f----~gwtets~Ken----------kni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 168 F----EGWTETSAKEN----------KNIPEAQRELVEK 192 (229)
T ss_pred c----cceeeeccccc----------cChhHHHHHHHHH
Confidence 7 45889999887 4555555555543
No 378
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=98.38 E-value=6e-06 Score=65.33 Aligned_cols=69 Identities=26% Similarity=0.334 Sum_probs=53.3
Q ss_pred eEEEEEEEeeCCC-ceEEEEEEEeeeeecCCEEEEecccC-----CCCceeEEEEEeec----ceeccEEecCCeEEEE
Q 013007 267 LMPIEDVFSIQGR-GTVATGRVEQGTIKVGEEVEVLGLTQ-----GPSLKTTVTGVEMF----KKILDRGEAGDNVGLL 335 (451)
Q Consensus 267 ~~~v~~~~~~~~~-G~v~~g~v~sG~l~~gd~v~i~p~~~-----~~~~~~~V~~I~~~----~~~v~~a~aG~~v~l~ 335 (451)
.+.|+++..++.. |.++++||.||+|++||.|++..... +.....+|..|... ..++++|.|||+|++.
T Consensus 2 ~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 2 VVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred EEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4678899888887 67999999999999999998854221 11134677788643 4789999999999885
No 379
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.37 E-value=4.5e-06 Score=81.45 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=53.1
Q ss_pred EEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC--------ccHHHHHHHHH---H----cCCCeEE
Q 013007 121 VEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM--------PQTKEHILLAR---Q----VGVPSLV 185 (451)
Q Consensus 121 ~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~--------~~t~~~l~~~~---~----~~ip~ii 185 (451)
..+...+..+.+||++|+....+.+......++++++|||.++-.+ ....+.+.... . .+.| ++
T Consensus 154 ~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~p-il 232 (317)
T cd00066 154 TKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTS-II 232 (317)
T ss_pred EEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCC-EE
Confidence 3455667789999999999999999999999999999999986321 11222222222 1 3577 88
Q ss_pred EEEeeccCC
Q 013007 186 CFLNKVDLV 194 (451)
Q Consensus 186 vviNK~D~~ 194 (451)
+++||.|+.
T Consensus 233 l~~NK~D~f 241 (317)
T cd00066 233 LFLNKKDLF 241 (317)
T ss_pred EEccChHHH
Confidence 999999965
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.37 E-value=3.4e-06 Score=72.77 Aligned_cols=117 Identities=21% Similarity=0.243 Sum_probs=65.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCC-c----------h--h-hhhcCceEEeeEE------------
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK-A----------P--E-EKKRGITIATAHV------------ 121 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~-~----------~--~-e~~~g~t~~~~~~------------ 121 (451)
|+++|..|+||||++..|.......|............ . . + ....+........
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEhhheecCCCceEEEcCCcCcccccchhHH
Confidence 78999999999999999988776665543322111000 0 0 0 0001111100000
Q ss_pred ----EeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 122 ----EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 122 ----~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
.....+..+.||||||..... ...+..+|.+++|+.... ......++ ...+..-.+ +++||+|
T Consensus 82 ~~~~~~~~~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~---~D~y~~~k-~~~~~~~~~-~~~~k~~ 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGA---GDDIQAIK-AGIMEIADI-VVVNKAD 148 (148)
T ss_pred HHHHHHHhcCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCc---hhHHHHhh-hhHhhhcCE-EEEeCCC
Confidence 001235689999999965333 346778999999997762 22222221 222333445 7899998
No 381
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.37 E-value=5.9e-07 Score=79.50 Aligned_cols=56 Identities=21% Similarity=0.416 Sum_probs=40.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
..+++++|.+|+|||||+|+|++.. ........|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~---------------~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR---------------ACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc---------------cceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 4799999999999999999999531 1122234578876665544 246899999993
No 382
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.36 E-value=6.5e-07 Score=78.18 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=38.9
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+|+++|.+|+|||||+|+|.+. .. .......|.|........ +..+.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~------~~---------~~~~~~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK------KV---------CKVAPIPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC------Cc---------eeeCCCCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 4578999999999999999999843 11 111223466665444332 245899999993
No 383
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.33 E-value=6.3e-06 Score=77.35 Aligned_cols=157 Identities=21% Similarity=0.275 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEE--EEec-CChHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYA--HVDC-PGHADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~--iiDt-PG~~~~ 141 (451)
.+|.++|..++|||||+..|-+.. ...|++ ..+..++...+.|.- ..+++ ++|- ++|...
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e~~Kkgsg--LeY~yl~V~de~RDd--------------~tr~~VWiLDGd~~h~~L 116 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSG--LEYLYLHVHDEDRDD--------------LTRCNVWILDGDLYHKGL 116 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhcccccCCCCC--cceEEEecccccchh--------------hhhcceEEecCchhhhhH
Confidence 599999999999999999997543 111221 111112222222211 12233 3332 557777
Q ss_pred HHHHHHhcccCC-EEEEEEeCCCCCC---------ccHHHHHH-------------------------------------
Q 013007 142 VKNMITGAAQMD-GGILVVSAPDGPM---------PQTKEHIL------------------------------------- 174 (451)
Q Consensus 142 ~~~~~~~~~~~d-~~ilVvda~~g~~---------~~t~~~l~------------------------------------- 174 (451)
++..+.+...++ .+||++|.++.|. .-..+|+.
T Consensus 117 Lk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r 196 (473)
T KOG3905|consen 117 LKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRR 196 (473)
T ss_pred HhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccc
Confidence 777766665555 4566777766543 00111111
Q ss_pred --------------------HHHHcCCCeEEEEEeeccCCC--------hHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 175 --------------------LARQVGVPSLVCFLNKVDLVE--------DEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 175 --------------------~~~~~~ip~iivviNK~D~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
+...+|+| ++||++|||.+. .++-++.+...++.|+-.+|. ..|.+
T Consensus 197 ~t~~~~~~de~~llPL~~dtLt~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-----aLiyT 270 (473)
T KOG3905|consen 197 TTVVGSSADEHVLLPLGQDTLTHNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-----ALIYT 270 (473)
T ss_pred cccccCccccccccccCCcchhhcCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-----eeEEe
Confidence 01135899 779999999853 234567778888999988875 48899
Q ss_pred cccccccCCCcccchhhHHHHHHHHHhh
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
|++.. .+++-|..+|...
T Consensus 271 SvKE~----------KNidllyKYivhr 288 (473)
T KOG3905|consen 271 SVKET----------KNIDLLYKYIVHR 288 (473)
T ss_pred ecccc----------cchHHHHHHHHHH
Confidence 99876 7888888888764
No 384
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.30 E-value=6.6e-06 Score=80.98 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=54.5
Q ss_pred EEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCC-----------CccHHHHHHHHHH----cCCCeE
Q 013007 120 HVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGP-----------MPQTKEHILLARQ----VGVPSL 184 (451)
Q Consensus 120 ~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~-----------~~~t~~~l~~~~~----~~ip~i 184 (451)
...+...+..+.+||.+|+..+.+.+...+..++++++|||.++-. ...+.+.+..+.. .+.| +
T Consensus 176 ~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~p-i 254 (342)
T smart00275 176 ETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTS-I 254 (342)
T ss_pred EEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCc-E
Confidence 3445667778899999999999999999999999999999998621 1222333322221 3567 8
Q ss_pred EEEEeeccCC
Q 013007 185 VCFLNKVDLV 194 (451)
Q Consensus 185 ivviNK~D~~ 194 (451)
++++||.|+.
T Consensus 255 il~~NK~D~~ 264 (342)
T smart00275 255 ILFLNKIDLF 264 (342)
T ss_pred EEEEecHHhH
Confidence 8999999975
No 385
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.30 E-value=5.8e-06 Score=74.78 Aligned_cols=126 Identities=21% Similarity=0.260 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch---hh------hhcCceEEeeEE-------------Ee
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---EE------KKRGITIATAHV-------------EY 123 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~-------------~~ 123 (451)
..|+++|+.|+||||.+-.|.......++...... .|... .| +.-|+....... .+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis--~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS--ADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE--ESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec--CCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 36899999999999999999877665555443332 22211 11 111222211000 01
Q ss_pred eeCCeeEEEEecCChHHH----HHHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 124 ETAKRHYAHVDCPGHADY----VKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~~~----~~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
..++..+.||||||...+ ..++...+ ...+-++||+|++.+.. ............++..+ +++|+|....
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~~l--IlTKlDet~~ 155 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGIDGL--ILTKLDETAR 155 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTCEE--EEESTTSSST
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCceE--EEEeecCCCC
Confidence 123467999999994332 23332222 25788999999987532 33345555566788854 5899998764
No 386
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.29 E-value=4.3e-06 Score=71.58 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=56.5
Q ss_pred HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc--CCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCC
Q 013007 143 KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDE 220 (451)
Q Consensus 143 ~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~--~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 220 (451)
+.....+..+|++++|+|++++...+..+....+... ++| +++|+||+|+.++++ .+ ...+.++..+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL~~~~~-~~----~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKK-NILLLNKADLLTEEQ-RK----AWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCc-EEEEEechhcCCHHH-HH----HHHHHHHhcC-----
Confidence 4556778889999999999988877777777777665 777 678999999976432 11 2333444432
Q ss_pred CCeeecccccc
Q 013007 221 IPIIRGSATSA 231 (451)
Q Consensus 221 ~pvi~~Sa~~g 231 (451)
.+++++||.++
T Consensus 72 ~~ii~iSa~~~ 82 (141)
T cd01857 72 IVVVFFSALKE 82 (141)
T ss_pred CeEEEEEecCC
Confidence 46899999876
No 387
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.25 E-value=5.2e-06 Score=72.26 Aligned_cols=83 Identities=28% Similarity=0.199 Sum_probs=56.4
Q ss_pred CEEEEEEeCCCCCCccHHHHH-HHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecccccc
Q 013007 153 DGGILVVSAPDGPMPQTKEHI-LLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSA 231 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l-~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g 231 (451)
|++++|+|+.++......... ..+...++| +|+|+||+|+.+.++..+ .+..+ .... ..+++++||.++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~~~~~~~~----~~~~~-~~~~----~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKK-LILVLNKADLVPKEVLRK----WLAYL-RHSY----PTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCC-EEEEEechhcCCHHHHHH----HHHHH-HhhC----CceEEEEeccCC
Confidence 789999999887665555444 355566788 678999999976432111 11122 2211 246899999998
Q ss_pred ccCCCcccchhhHHHHHHHHHhhC
Q 013007 232 LQGKNEEIGKKAILKLMDAVDEYI 255 (451)
Q Consensus 232 ~~~~~~~~~~~~i~~Ll~~l~~~l 255 (451)
.++.+|++.+.+.+
T Consensus 71 ----------~gi~~L~~~i~~~~ 84 (155)
T cd01849 71 ----------QGIEKKESAFTKQT 84 (155)
T ss_pred ----------cChhhHHHHHHHHh
Confidence 88899998886643
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.25 E-value=4.9e-06 Score=80.11 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=69.9
Q ss_pred ecCChHH-HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHH
Q 013007 134 DCPGHAD-YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLS 212 (451)
Q Consensus 134 DtPG~~~-~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~ 212 (451)
--|||.. -.+++...+..+|++++|+|+..+......+...... +.| +++|+||+|+.+... .+ ...++++
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp-~iiVlNK~DL~~~~~-~~----~~~~~~~ 77 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKP-RLLILNKSDLADPEV-TK----KWIEYFE 77 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCC-EEEEEEchhcCCHHH-HH----HHHHHHH
Confidence 3599865 4566777888999999999998877666554444433 667 668999999975322 11 2222233
Q ss_pred hcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCC
Q 013007 213 FYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIP 256 (451)
Q Consensus 213 ~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp 256 (451)
.. ..+++++||.++ .++.+|++.+.+.++
T Consensus 78 ~~-----~~~vi~vSa~~~----------~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 78 EQ-----GIKALAINAKKG----------QGVKKILKAAKKLLK 106 (287)
T ss_pred Hc-----CCeEEEEECCCc----------ccHHHHHHHHHHHHH
Confidence 22 246899999988 888888888877665
No 389
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.22 E-value=1.9e-05 Score=70.12 Aligned_cols=122 Identities=21% Similarity=0.212 Sum_probs=75.7
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc--hhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHH
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA--PEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMIT 147 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~--~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~ 147 (451)
+-+..|+||||+.-.|...+...|....... .|.. .....-+..........+.-...+.++|||+.... ....
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD--~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~ 80 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLID--ADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFIT 80 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEe--CCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHH
Confidence 3457899999999999988887776544432 2211 00000011000000000001116999999985443 2445
Q ss_pred hcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 148 GAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+..+|.+++++++.......+...+..+...+.+.+.+++|++|...
T Consensus 81 ~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 81 AIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 567899999999988766666666777777777776778999998653
No 390
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.3e-05 Score=78.85 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc---hhhh------hcCceEEeeEE---------Eee-eC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA---PEEK------KRGITIATAHV---------EYE-TA 126 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~---~~e~------~~g~t~~~~~~---------~~~-~~ 126 (451)
..|+++|+.|+||||++..|.......|....... .|.. ..++ .-|+.+....- .+. ..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~--aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT--TDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe--cCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 68999999999999999999887766664443322 2221 1111 11222211100 001 11
Q ss_pred CeeEEEEecCChHH----HHHHHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 127 KRHYAHVDCPGHAD----YVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 127 ~~~i~iiDtPG~~~----~~~~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
+..+.||||||... .+.++...+. ..|..+||+|++.+. ....+.+......++..+ ++||+|....
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F~~~~idgl--I~TKLDET~k 392 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDGI--VFTKFDETAS 392 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHhcCCCCCEE--EEEcccCCCC
Confidence 35799999999533 3444444332 367889999986432 222445555555677754 6899998763
No 391
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.19 E-value=3.6e-05 Score=68.61 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=58.3
Q ss_pred CCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHH
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEM 205 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~ 205 (451)
..+.+.++|||+... ......+..+|.+++++.+...........++.++..+.+ +.+|+||+|.... . .+
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~-~~vV~N~~~~~~~--~----~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINKYDLNDE--I----AE 161 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCC-EEEEEeCCCCCcc--h----HH
Confidence 467899999996432 2344556789999999998876556677777888888888 5689999997532 1 22
Q ss_pred HHHHHHHhcCC
Q 013007 206 ELRELLSFYKF 216 (451)
Q Consensus 206 ~~~~~l~~~~~ 216 (451)
++.++++.+++
T Consensus 162 ~~~~~~~~~~~ 172 (179)
T cd03110 162 EIEDYCEEEGI 172 (179)
T ss_pred HHHHHHHHcCC
Confidence 45566666543
No 392
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.19 E-value=2.5e-06 Score=74.30 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=40.3
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+++++|.+|+|||||+|+|++... ......+|+|.......+ +..+.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~---------------~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK---------------LKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc---------------ccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 457899999999999999999995421 112233466666555444 246899999993
No 393
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=98.18 E-value=1.8e-05 Score=60.70 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=58.3
Q ss_pred cEEEEEEEEeecCCCC-----cccccccCceeEEEEEeeeeeeeEEEeCCccccCCCCEEEEEEEeCCeEeeecCCeEEE
Q 013007 360 KKFEAEIYVLTKDEGG-----RHTAFFSNYRPQIYLRTADVTGKVELLGDVKMVMPGDNVNAAFELISPLPLQQGQRFAL 434 (451)
Q Consensus 360 ~~f~a~i~~l~~~~~~-----~~~~i~~g~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~rfvl 434 (451)
.+++.+..+|++.-|. +..+|..|-..++.++++...|++....+ | .+++.|.+|+|.+.|+|+++
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~-------d--~~~v~L~~Pvc~~~g~rvai 72 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVKK-------D--MAEVELKKPVCAEKGERVAI 72 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEET-------T--EEEEEEEEEEE-STTSEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEEC-------C--EEEEEecCCeEcCcCCeeee
Confidence 4677888888876442 23789999999999999999999988843 3 57888999999999999998
Q ss_pred ee----CCcEEEEEEE
Q 013007 435 RE----GGRTVGAGVV 446 (451)
Q Consensus 435 r~----~~~tig~G~I 446 (451)
.+ .+|.||+|.|
T Consensus 73 SRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 73 SRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred ehhccCeEEEEEEEeC
Confidence 44 2799999986
No 394
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.16 E-value=1.2e-05 Score=79.97 Aligned_cols=102 Identities=19% Similarity=0.140 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCC
Q 013007 138 HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFP 217 (451)
Q Consensus 138 ~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (451)
.++|..........+|++++|+|+.+....-..+....+ .+.| +++|+||+|+.+.+...+.+.+.++++++..++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~p-iilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNP-VLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCC-EEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 457777665556788999999999875433333333322 2556 7799999999763322333444455566666652
Q ss_pred CCCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 218 GDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 218 ~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
...++++||+++ .|+++|++.|.++
T Consensus 127 --~~~i~~vSAk~g----------~gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 --PVDIILVSAKKG----------NGIDELLDKIKKA 151 (360)
T ss_pred --cCcEEEecCCCC----------CCHHHHHHHHHHH
Confidence 125899999998 8899999888764
No 395
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.16 E-value=2.8e-06 Score=72.69 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=36.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
+++++|.+|+|||||+|+|++... . ......|.|.......+ + ..+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~------~---------~~~~~~~~~~~~~~~~~--~-~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKK------V---------SVSATPGKTKHFQTIFL--T-PTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc------e---------eeCCCCCcccceEEEEe--C-CCEEEEECCCc
Confidence 899999999999999999985311 1 11112244444443333 2 25899999995
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.15 E-value=1.5e-05 Score=80.62 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=71.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-hhh------hhcCceEEeeEEEe-----------eeC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEE------KKRGITIATAHVEY-----------ETA 126 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-~~e------~~~g~t~~~~~~~~-----------~~~ 126 (451)
...|.++|.+|+||||++..|.......|............. ..+ ..-++.+....... ...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~ 174 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK 174 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh
Confidence 468999999999999999999887776665443322111111 000 11122221110000 012
Q ss_pred CeeEEEEecCChHHHH----HHHH--HhcccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYV----KNMI--TGAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~----~~~~--~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
...+.|+||||...+. .++. ..+..+|.+++|+|++.+. +..+.+.... ..++. -+++||+|...
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av~~a~~F~~~l~i~--gvIlTKlD~~a 246 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAKNQAKAFHEAVGIG--GIIITKLDGTA 246 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHHHHHHHHHhcCCCC--EEEEecccCCC
Confidence 3478999999954432 2222 2344689999999998752 2222222222 23343 36789999764
No 397
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.15 E-value=1.3e-05 Score=71.51 Aligned_cols=139 Identities=24% Similarity=0.299 Sum_probs=68.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCcccee-eeeccCCc-hhh--hhcCceEEe---eEEEe--------------ee
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI-AFDEIDKA-PEE--KKRGITIAT---AHVEY--------------ET 125 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~-~~~~~d~~-~~e--~~~g~t~~~---~~~~~--------------~~ 125 (451)
-+.+.|.-|||||||+++|+. ....|..... .++..+.. +.+ .+.|..+.. ....+ ..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 467899999999999999997 3333433332 22221111 111 112322211 01100 11
Q ss_pred C--CeeEEEEecCChHHH--H---HHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHH
Q 013007 126 A--KRHYAHVDCPGHADY--V---KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEE 198 (451)
Q Consensus 126 ~--~~~i~iiDtPG~~~~--~---~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~ 198 (451)
. ...+.||.+.|..+- + ..........+.++.|||+..-........ .+......-.+ +++||+|++++++
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~-~~~~Qi~~ADv-IvlnK~D~~~~~~ 158 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPE-LLREQIAFADV-IVLNKIDLVSDEQ 158 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCH-HHHHHHCT-SE-EEEE-GGGHHHH-
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchh-hhhhcchhcCE-EEEeccccCChhh
Confidence 2 346789999994432 1 222223345789999999965311122211 12233333445 6899999987543
Q ss_pred HHHHHHHHHH
Q 013007 199 LLELVEMELR 208 (451)
Q Consensus 199 ~~~~~~~~~~ 208 (451)
.++.+++.++
T Consensus 159 ~i~~~~~~ir 168 (178)
T PF02492_consen 159 KIERVREMIR 168 (178)
T ss_dssp -HHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 398
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.14 E-value=3.2e-06 Score=73.18 Aligned_cols=64 Identities=16% Similarity=0.215 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++++|++|+|||||+|.|.+.. ...+..+ ....+-+.+|.....+.+ . ....+|||||..+|
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is---------~~~~rGkHTTt~~~l~~l--~-~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS---------EKTGRGKHTTTHRELFPL--P-DGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S-----------------------SEEEEEE--T-TSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh---------cccCCCcccCCCeeEEec--C-CCcEEEECCCCCcc
Confidence 589999999999999999998542 1111100 011122233433333333 2 24689999998775
No 399
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.13 E-value=5.7e-06 Score=77.66 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=59.1
Q ss_pred hcccCCEEEEEEeCCCCC--CccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeee
Q 013007 148 GAAQMDGGILVVSAPDGP--MPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIR 225 (451)
Q Consensus 148 ~~~~~d~~ilVvda~~g~--~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~ 225 (451)
.++.+|.+++|+|+.+.. .....+.+..+...++| +++|+||+|+.++....+ +.. +.++..+ .+++.
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~-~vIV~NK~DL~~~~~~~~---~~~-~~~~~~g-----~~v~~ 102 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIE-PIIVLNKIDLLDDEDMEK---EQL-DIYRNIG-----YQVLM 102 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECcccCCCHHHHH---HHH-HHHHHCC-----CeEEE
Confidence 578899999999998644 23344455556667888 668999999976433221 122 2333333 57999
Q ss_pred ccccccccCCCcccchhhHHHHHHHHH
Q 013007 226 GSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 226 ~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
+||+++ .|+++|++.+.
T Consensus 103 ~SAktg----------~gi~eLf~~l~ 119 (245)
T TIGR00157 103 TSSKNQ----------DGLKELIEALQ 119 (245)
T ss_pred EecCCc----------hhHHHHHhhhc
Confidence 999998 89999988764
No 400
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.13 E-value=9.3e-06 Score=70.93 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=36.6
Q ss_pred CeeEEEEecCChHH---HHHH-----HHHhcccCCEEEEEEeCCCCCCc--cHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHAD---YVKN-----MITGAAQMDGGILVVSAPDGPMP--QTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~---~~~~-----~~~~~~~~d~~ilVvda~~g~~~--~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
...+.|+||||..+ .... .......+|.+++++|+...... .......++.. -.+ +++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~-ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADR-ILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCE-EEEecccC
Confidence 45678999999543 2222 22344568999999998753221 11111122222 235 58999996
No 401
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.11 E-value=4.1e-06 Score=75.53 Aligned_cols=63 Identities=24% Similarity=0.232 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
.+++++|.+|+|||||+|+|.+......+. .........+|+|.+.....+. ..+.++||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~-------~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL-------KDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc-------ccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 589999999999999999998653211100 0111223345788877665553 25899999994
No 402
>PRK12289 GTPase RsgA; Reviewed
Probab=98.10 E-value=1.4e-05 Score=78.62 Aligned_cols=83 Identities=24% Similarity=0.358 Sum_probs=58.7
Q ss_pred cccCCEEEEEEeCCCCCC-c-cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 149 AAQMDGGILVVSAPDGPM-P-QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~-~-~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
++++|.+++|+|+.+... . +..+.+..+...++| +|+|+||+|+.++++. + ...+.++.++ ++++++
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip-~ILVlNK~DLv~~~~~-~----~~~~~~~~~g-----~~v~~i 155 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLE-IVLCLNKADLVSPTEQ-Q----QWQDRLQQWG-----YQPLFI 155 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEchhcCChHHH-H----HHHHHHHhcC-----CeEEEE
Confidence 678999999999986432 2 335555566667888 6689999999864332 1 2223334444 468999
Q ss_pred cccccccCCCcccchhhHHHHHHHHH
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
||.++ .|+++|++.|.
T Consensus 156 SA~tg----------~GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETG----------IGLEALLEQLR 171 (352)
T ss_pred EcCCC----------CCHHHHhhhhc
Confidence 99998 88998888874
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=4.2e-05 Score=78.07 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcC--ccceeeeeccCCch---hhh------hcCceEEeeEEE-------eeeC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG--KAKAIAFDEIDKAP---EEK------KRGITIATAHVE-------YETA 126 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g--~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~~-------~~~~ 126 (451)
...|+++|..|+||||++..|.......+ ...... ..|... .+. ..|+.+....-. -...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLI--dtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALV--TTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEE--ecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 46899999999999999999987654432 222111 122211 111 112222111000 0123
Q ss_pred CeeEEEEecCChHHHHHH------HHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKN------MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~------~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
++.+.||||||....-.. .+.... ....++|+++..+... ..+.+......+.. -+++||+|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~~D-l~eii~~f~~~~~~--gvILTKlDEt~ 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHFSD-LDEVVRRFAHAKPQ--GVVLTKLDETG 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCChhH-HHHHHHHHHhhCCe--EEEEecCcCcc
Confidence 578999999995432111 111112 3456788888754322 22334444444433 36899999864
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=98.05 E-value=4.5e-05 Score=76.91 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=71.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhc-CccceeeeeccCCch-h------hhhcCceEEeeEE-------------Ee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAP-E------EKKRGITIATAHV-------------EY 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~-~------e~~~g~t~~~~~~-------------~~ 123 (451)
...|.++|.+|+||||++..|....... |.............. . ....|+.+..... ..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998877666 655444332211111 0 1112332221100 00
Q ss_pred eeCCeeEEEEecCChH----HHHHHHHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 124 ETAKRHYAHVDCPGHA----DYVKNMITG--AAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
...++.+.|+||||.. ....++... ....|.+++|+|+..| ....+.+.... ..++. -+++||+|...
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~~~~~i~--giIlTKlD~~~ 254 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFNEALGLT--GVILTKLDGDA 254 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHHhhCCCC--EEEEeCccCcc
Confidence 1234679999999943 333332221 2357888999998653 22222222222 34454 35789999654
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=3.4e-05 Score=75.59 Aligned_cols=127 Identities=16% Similarity=0.147 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch---hhh------hcCceEEeeEE--E-------ee-e
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP---EEK------KRGITIATAHV--E-------YE-T 125 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~--~-------~~-~ 125 (451)
...++++|+.|+||||++..|.......|....... .|... .++ .-++.+....- . +. .
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt--aDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT--TDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe--CCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 468999999999999999999877665554333222 22211 111 11221111100 0 00 1
Q ss_pred CCeeEEEEecCChH----HHHHHHHHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 126 AKRHYAHVDCPGHA----DYVKNMITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 126 ~~~~i~iiDtPG~~----~~~~~~~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
.+..+.||||||.. +.+.++..... ..|..+||+++.... .+..+.+......++.. +++||+|....
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~-~d~~~i~~~f~~l~i~g--lI~TKLDET~~ 357 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS-ADVMTILPKLAEIPIDG--FIITKMDETTR 357 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH-HHHHHHHHhcCcCCCCE--EEEEcccCCCC
Confidence 34689999999963 34444433332 357778888764211 12222333334456664 46999998753
No 406
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=98.04 E-value=6.3e-05 Score=64.17 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=67.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhc
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGA 149 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~ 149 (451)
.-+..|+||||+.-.|.......|....... .|. .+..+ .+.+.++|||+..+ ......+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd--~D~------~~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLD--ADL------GLANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE--CCC------CCCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 4467899999999988877766665433321 121 01111 16689999988543 2234567
Q ss_pred ccCCEEEEEEeCCCCCCccHHHHHHHHHH-cCCCeEEEEEeeccCC
Q 013007 150 AQMDGGILVVSAPDGPMPQTKEHILLARQ-VGVPSLVCFLNKVDLV 194 (451)
Q Consensus 150 ~~~d~~ilVvda~~g~~~~t~~~l~~~~~-~~ip~iivviNK~D~~ 194 (451)
..+|.+++|++++......+...+..+.. .+.+++.+++|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 78999999999876444445555555433 2344577899999843
No 407
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.01 E-value=1.1e-05 Score=77.80 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=40.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+++++|.+|+|||||+|+|.+.. .. ......|+|........ +..+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~------~~---------~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKK------IA---------KTGNRPGVTKAQQWIKL---GKGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC------cc---------ccCCCCCeEEEEEEEEe---CCcEEEEECCCc
Confidence 45789999999999999999998531 11 11223477777654433 346899999995
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=98.01 E-value=2.9e-05 Score=75.13 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=57.1
Q ss_pred cccCCEEEEEEeCCCCCCc--cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 149 AAQMDGGILVVSAPDGPMP--QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~~--~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
++.+|.+++|+|+.+.... ...+.+..+...++| +++|+||+|+.++.+..+ +..+.++.++ .+++++
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~~----~~~~~~~~~g-----~~v~~v 147 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIK-PIIVLNKIDLLDDLEEAR----ELLALYRAIG-----YDVLEL 147 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEhHHcCCCHHHHH----HHHHHHHHCC-----CeEEEE
Confidence 6789999999999764332 223455556677888 568999999974333221 2233344443 479999
Q ss_pred cccccccCCCcccchhhHHHHHHHH
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAV 251 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l 251 (451)
||+++ .|+++|++.+
T Consensus 148 SA~~g----------~gi~~L~~~l 162 (298)
T PRK00098 148 SAKEG----------EGLDELKPLL 162 (298)
T ss_pred eCCCC----------ccHHHHHhhc
Confidence 99998 8888888775
No 409
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.00 E-value=9.5e-06 Score=77.66 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=39.8
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+++++|.+|+|||||+|+|.+.. . .......|+|.....+.+ +..+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~------~---------~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKK------V---------AKVGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC------c---------cccCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 45789999999999999999998431 1 111223366666554444 235899999996
No 410
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.99 E-value=0.00022 Score=69.30 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=58.2
Q ss_pred CceEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCC-----ccH---HHHHHHHHH------
Q 013007 113 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-----PQT---KEHILLARQ------ 178 (451)
Q Consensus 113 g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~-----~~t---~~~l~~~~~------ 178 (451)
-.|.......|...+..+.++|.+|+..-.+.++...-.++++|+|++.++-.+ ..+ .+.+.+...
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 334444566677788889999999999999999999999999999999875211 111 222222221
Q ss_pred -cCCCeEEEEEeeccCCC
Q 013007 179 -VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 179 -~~ip~iivviNK~D~~~ 195 (451)
.+.+ +|+++||.|+..
T Consensus 260 F~~ts-iiLFLNK~DLFe 276 (354)
T KOG0082|consen 260 FANTS-IILFLNKKDLFE 276 (354)
T ss_pred cccCc-EEEEeecHHHHH
Confidence 1455 889999999863
No 411
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.99 E-value=5.9e-05 Score=61.11 Aligned_cols=100 Identities=24% Similarity=0.252 Sum_probs=68.0
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHhc-CccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHH
Q 013007 68 VGTI-GHVDHGKTTLTAAITKVLAEE-GKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNM 145 (451)
Q Consensus 68 I~vi-G~~~~GKSTLi~~L~~~~~~~-g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~ 145 (451)
|+++ +..|+||||+.-.|....... |+......... . . ...+.++|||+..... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~--~-----~--------------~~D~IIiDtpp~~~~~--~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDL--Q-----F--------------GDDYVVVDLGRSLDEV--S 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCC--C-----C--------------CCCEEEEeCCCCcCHH--H
Confidence 3444 447899999999998777665 65444331111 0 0 0168999998865432 3
Q ss_pred HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCC---eEEEEEee
Q 013007 146 ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP---SLVCFLNK 190 (451)
Q Consensus 146 ~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip---~iivviNK 190 (451)
...+..+|.++++++++......+.+.+..+...+.+ ++.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4456789999999998876666777777777776654 67788886
No 412
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.98 E-value=1.3e-05 Score=71.07 Aligned_cols=56 Identities=21% Similarity=0.267 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
.++++++|.+|+|||||+|+|.+... .......|.|.......+. ..+.++||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~---------------~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV---------------AKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc---------------eeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 46899999999999999999985311 0111222566655554443 56899999995
No 413
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.96 E-value=0.00033 Score=73.75 Aligned_cols=183 Identities=19% Similarity=0.255 Sum_probs=122.2
Q ss_pred EecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe-eccCCChHHHHHHHHHHHHHHH
Q 013007 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~~~~~~~l 211 (451)
-|+-|..+-+.+.+..+..-+.-+=|+.+.-| +-++....++...+ -+|+.+| |++ . ..+++.
T Consensus 392 ad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG--~i~~~Dv~~a~~~~--a~i~~Fnv~~~----~--------~~~~~a 455 (587)
T TIGR00487 392 ADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG--GITETDISLASASN--AIIIGFNVRPD----A--------TAKNVA 455 (587)
T ss_pred eCCcchHHHHHHHHHhhcccCCeEEEEEeecC--CCchhhHHHHHhcC--CEEEEEecCCC----H--------HHHHHH
Confidence 58888888777777777777777777776544 34444555555554 2556777 333 1 223344
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeee
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 291 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~ 291 (451)
+.. .++++.-+-.. .-++++-+++...+++ .....---...|..+|..+..|.++..+|..|+
T Consensus 456 ~~~-----~v~i~~~~iIY-----------~l~d~~~~~~~~~~~~-~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~ 518 (587)
T TIGR00487 456 EAE-----NVDIRYYSVIY-----------KLIDEIRAAMKGMLDP-EYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGV 518 (587)
T ss_pred HHc-----CCeEEEeChHH-----------HHHHHHHHHHHhccCc-ceeeEeeeeEEEEEEEecCCCCEEEEEEEecCE
Confidence 443 34555433221 2234444444444443 222222234667899998888999999999999
Q ss_pred eecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 292 IKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 292 l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
++.|..+++...+.. -...+|.||+.++++++++..|+-|++.+.+. .+++.||+|-
T Consensus 519 i~~~~~~~v~r~~~~-i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~ 575 (587)
T TIGR00487 519 IKRGNPLRVIRDGVV-IFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIE 575 (587)
T ss_pred EecCCeEEEEeCCEE-EEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEE
Confidence 999999999873321 13468999999999999999999999999865 6899999985
No 414
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.96 E-value=2.1e-05 Score=72.87 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=67.3
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..+...|+++|..++|||||+|.|++.. ..+.. .+. .....+|+-+....... ..+..+.++||||..+.
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~-----~~f~~---~~~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTL-----SGFDV---MDT-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGR 73 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCC-----CCeEe---cCC-CCCCccceEEEeccccC-CCcceEEEEecCCcCcc
Confidence 3456789999999999999999998541 11111 111 01122233222211111 13578999999995432
Q ss_pred ------HHHHHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHH---------------HcCCCeEEEEEeeccCC
Q 013007 142 ------VKNMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLAR---------------QVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 142 ------~~~~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~---------------~~~ip~iivviNK~D~~ 194 (451)
....+.++.. +|++|+.++... ..+....+..+. ..-.|.++.++...++.
T Consensus 74 ~~~~~~~~~~~~~l~~llss~~i~n~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~ 147 (224)
T cd01851 74 ERGEFEDDARLFALATLLSSVLIYNSWETI--LGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLD 147 (224)
T ss_pred ccCchhhhhHHHHHHHHHhCEEEEeccCcc--cHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCC
Confidence 2333444554 899999888753 222222222111 12357778888766654
No 415
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.96 E-value=0.00027 Score=76.44 Aligned_cols=183 Identities=20% Similarity=0.250 Sum_probs=122.3
Q ss_pred EecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe-eccCCChHHHHHHHHHHHHHHH
Q 013007 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~~~~~~~l 211 (451)
-|+-|..+-+...+..+..-+.-+=|+.+.-|. -+..-+.++...+ -+|+.+| |.| . .++.+.
T Consensus 594 ad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG~--it~~Dv~la~~~~--a~ii~Fnv~~~----~--------~~~~~a 657 (787)
T PRK05306 594 ADVQGSVEALKDSLEKLSTDEVKVNIIHSGVGA--ITESDVTLAAASN--AIIIGFNVRPD----A--------KARKLA 657 (787)
T ss_pred eCCcchHHHHHHHHHhhcccCCceEEEeeccCC--CCHHHHHHHHhcC--CEEEEEcCCCC----H--------HHHHHH
Confidence 488888777777777777777777777665443 3444444554443 2556666 333 1 223334
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeee
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 291 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~ 291 (451)
+..+ +.+..-+-.. .-++++-+++...+++ .....---.+.|..+|.++..|.|+..+|..|+
T Consensus 658 ~~~~-----v~i~~~~iIY-----------~l~d~~~~~~~~~l~~-~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~ 720 (787)
T PRK05306 658 EQEG-----VDIRYYSIIY-----------DLIDDVKAAMSGMLEP-EYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGK 720 (787)
T ss_pred HHcC-----CEEEEeChHH-----------HHHHHHHHHHhhccCc-hhheeeeeeEEEEEEEecCCCCeEEEEEEeeCE
Confidence 4332 4454433221 2344444555554543 222222234678899999989999999999999
Q ss_pred eecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 292 IKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 292 l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
|+.|..+++...+.. -...+|.||+.++.++.++..|+-||+.+.+. .|++.||+|-
T Consensus 721 i~~~~~~rv~R~~~~-i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie 777 (787)
T PRK05306 721 IKRNAKVRVLRDGVV-IYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIE 777 (787)
T ss_pred EecCCeEEEEeCCEE-EEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEE
Confidence 999999999874321 13578999999999999999999999999865 6999999985
No 416
>PRK12288 GTPase RsgA; Reviewed
Probab=97.95 E-value=1.3e-05 Score=78.97 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=38.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.++++|.+|+|||||+|+|++... ..|... ....+-+.+|.....+.+... ..++||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is---------~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVS---------DNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeecccc---------CcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 579999999999999999985421 111110 111233345555555544322 359999997654
No 417
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=1.1e-05 Score=78.78 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=42.3
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
+...+++++|-+|+|||||||+|.+. ... ...+..|+|.....+... ..+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k------~~~---------~~s~~PG~Tk~~q~i~~~---~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGK------KVA---------KTSNRPGTTKGIQWIKLD---DGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcc------cce---------eeCCCCceecceEEEEcC---CCeEEecCCC
Confidence 34578999999999999999999954 221 222334888877766554 3489999999
No 418
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.94 E-value=1.9e-05 Score=72.05 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH----
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY---- 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~---- 141 (451)
-+++++|-+.+|||||+..|++.-.+.-.+ .+.|...-.....+++-++.+.|.||..+=
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasy----------------efttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAY----------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccc----------------cceeEEEecceEeccccceeeecCcchhcccccC
Confidence 489999999999999999998542221111 123332222234456778999999996542
Q ss_pred ---HHHHHHhcccCCEEEEEEeCCCC
Q 013007 142 ---VKNMITGAAQMDGGILVVSAPDG 164 (451)
Q Consensus 142 ---~~~~~~~~~~~d~~ilVvda~~g 164 (451)
-+.++.-++.|+.+++|+|+...
T Consensus 124 kgrg~qviavartcnli~~vld~~kp 149 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLKP 149 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccCc
Confidence 33444556678999999998654
No 419
>PRK13796 GTPase YqeH; Provisional
Probab=97.94 E-value=6.1e-05 Score=74.95 Aligned_cols=99 Identities=21% Similarity=0.198 Sum_probs=62.9
Q ss_pred HHHHHHHHhcccCC-EEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCC
Q 013007 140 DYVKNMITGAAQMD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPG 218 (451)
Q Consensus 140 ~~~~~~~~~~~~~d-~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~ 218 (451)
+|.+ ++..+...| .+++|||+.+....... .+.... .+.| +++|+||+|+.+.+...+.+.+.+..+.+..++.
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~-~L~~~~-~~kp-viLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~- 132 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIP-GLHRFV-GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR- 132 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhH-HHHHHh-CCCC-EEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC-
Confidence 4544 666677666 88999999874432222 222211 2556 7789999999753222233333444555655552
Q ss_pred CCCCeeeccccccccCCCcccchhhHHHHHHHHHhh
Q 013007 219 DEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEY 254 (451)
Q Consensus 219 ~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~ 254 (451)
..+++.+||+++ .++.+|++.|.++
T Consensus 133 -~~~v~~vSAk~g----------~gI~eL~~~I~~~ 157 (365)
T PRK13796 133 -PVDVVLISAQKG----------HGIDELLEAIEKY 157 (365)
T ss_pred -cCcEEEEECCCC----------CCHHHHHHHHHHh
Confidence 235899999998 8888888888765
No 420
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.93 E-value=0.00032 Score=75.23 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=123.4
Q ss_pred EecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEe-eccCCChHHHHHHHHHHHHHHH
Q 013007 133 VDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLN-KVDLVEDEELLELVEMELRELL 211 (451)
Q Consensus 133 iDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviN-K~D~~~~~~~~~~~~~~~~~~l 211 (451)
-|+-|..+-+.+.+..+....+-+=|+.+.-| +-|..-+.++...+- +|+.+| |.+ . .++.+.
T Consensus 549 ad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG--~it~~Dv~lA~~~~a--~ii~Fnv~~~----~--------~~~~~a 612 (742)
T CHL00189 549 TDTQGSIEAIINSISQIPQKKVQLNILYASLG--EVTETDVEFASTTNA--EILAFNTNLA----P--------GAKKAA 612 (742)
T ss_pred eCCcchHHHHHHHHHhcCCCcEEEEEEEeecC--CCCHHHHHHHHhcCC--EEEEeeCCCC----H--------HHHHHH
Confidence 59999888888888877766677777776544 344445555655542 556776 332 1 223344
Q ss_pred HhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeee
Q 013007 212 SFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGT 291 (451)
Q Consensus 212 ~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~ 291 (451)
+..+ +.+..-+-.. .-++++-+++...++ |.....-.-++.|..+|.++. |.++..+|.+|+
T Consensus 613 ~~~~-----v~i~~~~iIY-----------~lid~~~~~~~~~l~-~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~ 674 (742)
T CHL00189 613 RKLN-----IIIKEYQVIY-----------DLLEYIEALMEDLLD-PEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGK 674 (742)
T ss_pred HHcC-----CEEEEeChHH-----------HHHHHHHHHHhhccC-ceeeeeeceeEEeeEEEecCC-CEEEEEEEecCE
Confidence 4433 4454433221 223444444444444 332233344677889999886 899999999999
Q ss_pred eecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 292 IKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 292 l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
|+.|..+++...+.. -...+|.||+.++.++.++..|.-||+.+.+. .+++.||+|-
T Consensus 675 i~~~~~~rv~R~~~~-i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie 731 (742)
T CHL00189 675 ITKNALIKVIRENKL-IYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIH 731 (742)
T ss_pred EecCCeEEEEeCCeE-EEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEE
Confidence 999999999874421 13578999999999999999999999998854 6899999985
No 421
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.92 E-value=0.00011 Score=74.76 Aligned_cols=61 Identities=25% Similarity=0.366 Sum_probs=45.2
Q ss_pred cCCCeEEEEEeeccCCC--------hHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHH
Q 013007 179 VGVPSLVCFLNKVDLVE--------DEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDA 250 (451)
Q Consensus 179 ~~ip~iivviNK~D~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~ 250 (451)
+|+| ++||++|.|... .++.++.+...++.++-.+|. ..|++|.+.. .+++.|..+
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-----sL~yts~~~~----------~n~~~L~~y 258 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-----SLIYTSVKEE----------KNLDLLYKY 258 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-----eEEEeecccc----------ccHHHHHHH
Confidence 3688 889999999753 134566677778888888775 4788888766 678888888
Q ss_pred HHhhC
Q 013007 251 VDEYI 255 (451)
Q Consensus 251 l~~~l 255 (451)
|...+
T Consensus 259 i~h~l 263 (472)
T PF05783_consen 259 ILHRL 263 (472)
T ss_pred HHHHh
Confidence 77654
No 422
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.91 E-value=4.6e-05 Score=73.29 Aligned_cols=83 Identities=24% Similarity=0.224 Sum_probs=57.1
Q ss_pred cccCCEEEEEEeCCCCC-C-ccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeec
Q 013007 149 AAQMDGGILVVSAPDGP-M-PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRG 226 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~-~-~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~ 226 (451)
++.+|.+++|+|+.++. . ....+++..+...++| +++|+||+|+.++.+.. ......... ..+++++
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~~~~-----~~~~~~~~~-----g~~v~~v 144 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDEEEE-----LELVEALAL-----GYPVLAV 144 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChHHHH-----HHHHHHHhC-----CCeEEEE
Confidence 67799999999998765 3 2334455566777888 66899999998642211 111222222 2589999
Q ss_pred cccccccCCCcccchhhHHHHHHHHH
Q 013007 227 SATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 227 Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
||+++ .|+++|.+.|.
T Consensus 145 SA~~g----------~gi~~L~~~L~ 160 (287)
T cd01854 145 SAKTG----------EGLDELREYLK 160 (287)
T ss_pred ECCCC----------ccHHHHHhhhc
Confidence 99998 88888887663
No 423
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.91 E-value=2.3e-05 Score=76.87 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=54.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeE------EEe---eeCCeeEEEEec
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAH------VEY---ETAKRHYAHVDC 135 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~------~~~---~~~~~~i~iiDt 135 (451)
++++++|.+++|||||+++|++... ..+...+. ..+...|+-.-... ..+ ......+.++|.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypft--------Ti~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Di 74 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFT--------TIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDI 74 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCC--------CCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEec
Confidence 6899999999999999999997644 33322211 01111111100000 000 011235789999
Q ss_pred CChHH-------HHHHHHHhcccCCEEEEEEeCCC
Q 013007 136 PGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 136 PG~~~-------~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
||... .-...+..++.+|+++.||++.+
T Consensus 75 aGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 75 AGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99433 34455666788999999999864
No 424
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.87 E-value=1.4e-05 Score=75.60 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=40.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
...+++|++|+|||||+|+|.... ...|..+. ...+-+.+|.....+.+..++ .++||||...|
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~---------~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISE---------KLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcc---------cCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 378999999999999999997532 11121111 112333455555555554333 78999997654
No 425
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.87 E-value=7.1e-05 Score=75.47 Aligned_cols=127 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCch-h------hhhcCceEEeeEE-------------Ee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAP-E------EKKRGITIATAHV-------------EY 123 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~-~------e~~~g~t~~~~~~-------------~~ 123 (451)
...+.++|++|+||||++..|..... ..|.............. . ...-|+.+..... ..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999987754 45554433322211110 0 1111222211100 00
Q ss_pred eeCCeeEEEEecCChH----HHHHHHHH--hcccCCEEEEEEeCCCCCCccHHHHHHHHH-HcCCCeEEEEEeeccCCC
Q 013007 124 ETAKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLAR-QVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 124 ~~~~~~i~iiDtPG~~----~~~~~~~~--~~~~~d~~ilVvda~~g~~~~t~~~l~~~~-~~~ip~iivviNK~D~~~ 195 (451)
...++.+.|+||||.. ....++.. .....|.++||+|+..+ ....+...... ..++.. +++||+|...
T Consensus 179 ~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i~g--iIlTKlD~~~ 253 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGLTG--VVLTKLDGDA 253 (428)
T ss_pred HhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCCCE--EEEeCccCcc
Confidence 1234679999999943 23333322 12357899999998753 23333333332 346653 5699999654
No 426
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=0.00018 Score=68.23 Aligned_cols=127 Identities=21% Similarity=0.246 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCch--------hh-hhcCceEEeeEE---------Ee-ee
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAP--------EE-KKRGITIATAHV---------EY-ET 125 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~--------~e-~~~g~t~~~~~~---------~~-~~ 125 (451)
..+++++|..|+||||++..|.......+....... .|... .. ..-++.+....- .+ ..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~--~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT--TDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe--cCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 359999999999999999999877654443322221 22111 00 011222211100 00 11
Q ss_pred CCeeEEEEecCChH----HHHHHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 126 AKRHYAHVDCPGHA----DYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 126 ~~~~i~iiDtPG~~----~~~~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
.+..+.|+||||.. +.+.++...+ ...|-.+||+||+.+. .+..+.+......++..+ ++||+|....
T Consensus 153 ~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~-~d~~~~~~~f~~~~~~~~--I~TKlDet~~ 226 (270)
T PRK06731 153 ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNFKDIHIDGI--VFTKFDETAS 226 (270)
T ss_pred CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH-HHHHHHHHHhCCCCCCEE--EEEeecCCCC
Confidence 24689999999954 2344444333 2467889999987422 122334444445677754 6899998763
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.83 E-value=0.00011 Score=73.16 Aligned_cols=126 Identities=18% Similarity=0.131 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhc----CccceeeeeccCCch---hhh------hcCceEEeeEEE-------eee
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEE----GKAKAIAFDEIDKAP---EEK------KRGITIATAHVE-------YET 125 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~----g~~~~~~~~~~d~~~---~e~------~~g~t~~~~~~~-------~~~ 125 (451)
..|+++|+.|+||||.+..|....... |...... ..|... .++ .-|+.+...... -..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~li--t~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKII--TIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEE--eccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 589999999999999999998665432 2222221 122211 111 112222111100 012
Q ss_pred CCeeEEEEecCChHH----HHHHHHHhccc--CC-EEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 126 AKRHYAHVDCPGHAD----YVKNMITGAAQ--MD-GGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~----~~~~~~~~~~~--~d-~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
.+..+.||||||... .+.++...+.. .+ -.+||+||+.+.. ...+.+......++..+ ++||.|....
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~-~~~~~~~~~~~~~~~~~--I~TKlDet~~ 327 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS-DVKEIFHQFSPFSYKTV--IFTKLDETTC 327 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH-HHHHHHHHhcCCCCCEE--EEEeccCCCc
Confidence 467899999999432 23344333332 23 5889999987632 22345555555667754 6899998753
No 428
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=8.7e-05 Score=73.90 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=70.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH-HhcCccceeeeeccCCchh---h------hhcCceEEeeE------EEeeeCCee
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPE---E------KKRGITIATAH------VEYETAKRH 129 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~-~~~g~~~~~~~~~~d~~~~---e------~~~g~t~~~~~------~~~~~~~~~ 129 (451)
..++++|++|+||||++..|.... ...|....... .|.... + ...|+...... -.+...+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit--~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT--TDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec--ccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 468999999999999999998644 34454332221 122110 0 11122211100 000113567
Q ss_pred EEEEecCChHH----HHHHHHHhcc-----cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 130 YAHVDCPGHAD----YVKNMITGAA-----QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 130 i~iiDtPG~~~----~~~~~~~~~~-----~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
+.+|||||... .+..+...+. ...-.+||+|++.+.. +..+.+......++..+ ++||+|....
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~~f~~~~~~gl--IlTKLDEt~~ 374 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLKAYESLNYRRI--LLTKLDEADF 374 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHHHhcCCCCCEE--EEEcccCCCC
Confidence 89999999542 2333322222 2346889999986532 23444444566778754 6899998753
No 429
>PRK12289 GTPase RsgA; Reviewed
Probab=97.81 E-value=2e-05 Score=77.60 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=38.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
.++++|.+|+|||||+|+|.+... ..|... ....+-+.+|.....+.+... ..++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs---------~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS---------GKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccccc---------CCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 489999999999999999985321 111110 111233345555544444222 379999997553
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.81 E-value=0.00029 Score=71.40 Aligned_cols=125 Identities=19% Similarity=0.139 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-h-cCccceeeeeccCCch---hh------hhcCceEEeeEEE-------eeeCC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA-E-EGKAKAIAFDEIDKAP---EE------KKRGITIATAHVE-------YETAK 127 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~-~-~g~~~~~~~~~~d~~~---~e------~~~g~t~~~~~~~-------~~~~~ 127 (451)
..++++|+.|+||||++..|..... . .|....... .|... .+ +..++.+...... -...+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~--~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT--LDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE--CCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 4899999999999999999987665 3 333332221 22211 01 1122222111000 01235
Q ss_pred eeEEEEecCChHHH----HHHHHHhcc---cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 128 RHYAHVDCPGHADY----VKNMITGAA---QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 128 ~~i~iiDtPG~~~~----~~~~~~~~~---~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
..+.||||||...+ ...+...+. ..+-+.+|++++.+. ....+.+......++.. +++||+|...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~~~--vI~TKlDet~ 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPLDG--LIFTKLDETS 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCCCE--EEEecccccc
Confidence 67999999995332 222222222 335678889986532 22233344444555543 5799999865
No 431
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.79 E-value=3.8e-05 Score=72.84 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=57.6
Q ss_pred hccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEe-------eeC---Ce
Q 013007 59 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEY-------ETA---KR 128 (451)
Q Consensus 59 ~~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~-------~~~---~~ 128 (451)
+.+...+++++++|-+|+|||||+|+|++.....+...|- ..+.+.+ .+......| ... .-
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~--------TIdPn~a-~V~v~d~Rfd~l~~~Y~~~~~vpa 84 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFC--------TIDPNEA-RVEVPDSRFDLLCPIYGPKSKVPA 84 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcc--------eeccccc-eeecCchHHHHHHHhcCCcceeee
Confidence 3444467899999999999999999999764443333321 1111111 011100001 111 13
Q ss_pred eEEEEecCChHH-------HHHHHHHhcccCCEEEEEEeCCC
Q 013007 129 HYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAPD 163 (451)
Q Consensus 129 ~i~iiDtPG~~~-------~~~~~~~~~~~~d~~ilVvda~~ 163 (451)
.+++.|++|... .-...++.++.+|+++-||++..
T Consensus 85 ~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 85 FLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 578999999433 33444555678999999999865
No 432
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.0011 Score=67.03 Aligned_cols=105 Identities=21% Similarity=0.308 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhCCCCCcCCCCCeeEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeeccee
Q 013007 243 AILKLMDAVDEYIPDPERQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKI 322 (451)
Q Consensus 243 ~i~~Ll~~l~~~lp~~~~~~~~p~~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~ 322 (451)
.++++-.++...+.+ .....---..-+-.+|..++.|.++...|..|+++.|..+.+...+.. -...+|.||+.++++
T Consensus 392 lied~~~~~~g~l~p-~~~e~~~g~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~v-i~~G~i~sLk~~kdd 469 (509)
T COG0532 392 LIEDVEAAMKGMLEP-EKKERVIGLAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVV-IYEGEVESLKRFKDD 469 (509)
T ss_pred HHHHHHHHHHhccch-hhhhhcccceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeE-EEeeEEEeeeccCcc
Confidence 345555555555442 222222223456788899999999999999999999999999753321 234799999999999
Q ss_pred ccEEecCCeEEEEeccccccCCCCCeEEe
Q 013007 323 LDRGEAGDNVGLLLRGLKREDVQRGQVIA 351 (451)
Q Consensus 323 v~~a~aG~~v~l~l~~~~~~~i~~G~vl~ 351 (451)
+.++.+|+-|++.+++ ..+++.||+|-
T Consensus 470 v~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 470 VKEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred HhHhccCcEEEEEecC--cccCCCCCEEE
Confidence 9999999999999986 57999999985
No 433
>PRK01889 GTPase RsgA; Reviewed
Probab=97.78 E-value=0.00011 Score=72.74 Aligned_cols=82 Identities=28% Similarity=0.307 Sum_probs=58.9
Q ss_pred cccCCEEEEEEeCCCCCCc-cHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecc
Q 013007 149 AAQMDGGILVVSAPDGPMP-QTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~~-~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~S 227 (451)
++++|.+++|+++...+.. .....+..+...+++. ++|+||+|+.++.+ + ..+.+..+ . ...+++++|
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~~~--~-~~~~~~~~----~---~g~~Vi~vS 178 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEP-VIVLTKADLCEDAE--E-KIAEVEAL----A---PGVPVLAVS 178 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCE-EEEEEChhcCCCHH--H-HHHHHHHh----C---CCCcEEEEE
Confidence 5679999999999766665 4556667778899995 57999999986422 1 11222222 1 246899999
Q ss_pred ccccccCCCcccchhhHHHHHHHH
Q 013007 228 ATSALQGKNEEIGKKAILKLMDAV 251 (451)
Q Consensus 228 a~~g~~~~~~~~~~~~i~~Ll~~l 251 (451)
+.++ .++++|.++|
T Consensus 179 a~~g----------~gl~~L~~~L 192 (356)
T PRK01889 179 ALDG----------EGLDVLAAWL 192 (356)
T ss_pred CCCC----------ccHHHHHHHh
Confidence 9998 8888888876
No 434
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.78 E-value=4.4e-05 Score=66.43 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=36.4
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
...+++++|.+++|||||+|+|.+.. . .......|.|........ +..+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~------~---------~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH------S---------ASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC------c---------cccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 45688999999999999999998421 0 011112244443332222 346899999993
No 435
>PRK12288 GTPase RsgA; Reviewed
Probab=97.77 E-value=0.00017 Score=71.07 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=58.3
Q ss_pred cccCCEEEEEEeCCCCCCcc-HHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeecc
Q 013007 149 AAQMDGGILVVSAPDGPMPQ-TKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGS 227 (451)
Q Consensus 149 ~~~~d~~ilVvda~~g~~~~-t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~S 227 (451)
++++|.+++|.+........ ....+..+...++| .++|+||+|+.++.+. +.+. +..+.++.++ .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~-~VIVlNK~DL~~~~~~-~~~~-~~~~~y~~~g-----~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIE-PLIVLNKIDLLDDEGR-AFVN-EQLDIYRNIG-----YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCC-EEEEEECccCCCcHHH-HHHH-HHHHHHHhCC-----CeEEEEe
Confidence 56799999999876544332 33444556677888 5589999999864321 1122 2222333433 5799999
Q ss_pred ccccccCCCcccchhhHHHHHHHHHh
Q 013007 228 ATSALQGKNEEIGKKAILKLMDAVDE 253 (451)
Q Consensus 228 a~~g~~~~~~~~~~~~i~~Ll~~l~~ 253 (451)
|+++ +|+++|++.|..
T Consensus 190 A~tg----------~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTG----------EGLEELEAALTG 205 (347)
T ss_pred CCCC----------cCHHHHHHHHhh
Confidence 9998 899999988854
No 436
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.75 E-value=3.5e-05 Score=72.30 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHAD 140 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~ 140 (451)
..++++|++|+|||||+|+|.+.... .|.... ...+.+++|.....+.+ .+ ..++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~---------~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISS---------KLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceec---------cCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 47899999999999999999865321 121111 11223345665555544 22 37999999654
No 437
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.00043 Score=68.10 Aligned_cols=128 Identities=21% Similarity=0.182 Sum_probs=73.7
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccc-eeeeeccCCc---hhhhh------cCceEEeeEEE-------eee
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAK-AIAFDEIDKA---PEEKK------RGITIATAHVE-------YET 125 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~-~~~~~~~d~~---~~e~~------~g~t~~~~~~~-------~~~ 125 (451)
+...|+++|++|+||||.+-.|..... ..++.. .... +|.. ..|+- -|+.+....-. ...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT--tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT--TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE--eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 368999999999999999999876544 222221 1111 1221 11111 12333221110 012
Q ss_pred CCeeEEEEecCChHHH----HHHHHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 126 AKRHYAHVDCPGHADY----VKNMITGAAQ--MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~----~~~~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
.++.+.|+||.|+..+ +.++...+.. ..-..||++++.. ....++.+......++..+ ++||+|....
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~~~--I~TKlDET~s 353 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPIDGL--IFTKLDETTS 353 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCccee--EEEcccccCc
Confidence 4568999999996553 4444443333 3456678887642 2334555666667788865 5899998764
No 438
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.71 E-value=0.00077 Score=66.36 Aligned_cols=175 Identities=21% Similarity=0.295 Sum_probs=92.1
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCcc-ceeeeeccCCchhhhhcCceEEeeEE--------Eeee---CCee
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKA-KAIAFDEIDKAPEEKKRGITIATAHV--------EYET---AKRH 129 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~-~~~~~~~~d~~~~e~~~g~t~~~~~~--------~~~~---~~~~ 129 (451)
....+-|+++|++-.|||||+.++...+.-..-. .+.-.+..|.+|..-. |.|+.++.- .... -..+
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~k 92 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVK 92 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEE
Confidence 4456889999999999999999997543211000 0000001233332222 445443211 1111 2356
Q ss_pred EEEEecCC--------hHH-----------------HHHHHHHhccc-----CC-EEEEEEeCCCCC------CccHHHH
Q 013007 130 YAHVDCPG--------HAD-----------------YVKNMITGAAQ-----MD-GGILVVSAPDGP------MPQTKEH 172 (451)
Q Consensus 130 i~iiDtPG--------~~~-----------------~~~~~~~~~~~-----~d-~~ilVvda~~g~------~~~t~~~ 172 (451)
+.++||-| |.+ |.....-|.+. +- ++++--|.+-+. .....+.
T Consensus 93 VRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 93 VRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHH
Confidence 78999988 222 55555555443 11 222223333221 1344566
Q ss_pred HHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccccccccCCCcccchhhHHHHHHHHH
Q 013007 173 ILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSATSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 173 l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
...++..|.| ||+++|-.+=.. ++.. +...++-++| ++|++|++...- ..+.+..+|+.+.
T Consensus 173 I~ELk~igKP-FvillNs~~P~s-~et~----~L~~eL~ekY-----~vpVlpvnc~~l--------~~~DI~~Il~~vL 233 (492)
T PF09547_consen 173 IEELKEIGKP-FVILLNSTKPYS-EETQ----ELAEELEEKY-----DVPVLPVNCEQL--------REEDITRILEEVL 233 (492)
T ss_pred HHHHHHhCCC-EEEEEeCCCCCC-HHHH----HHHHHHHHHh-----CCcEEEeehHHc--------CHHHHHHHHHHHH
Confidence 7788899999 788999777443 2321 1223344454 478998886431 1245566665554
Q ss_pred hhCC
Q 013007 253 EYIP 256 (451)
Q Consensus 253 ~~lp 256 (451)
-.+|
T Consensus 234 yEFP 237 (492)
T PF09547_consen 234 YEFP 237 (492)
T ss_pred hcCC
Confidence 4444
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00019 Score=72.03 Aligned_cols=129 Identities=20% Similarity=0.181 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHH-hcCccc-eeeeeccCC-c------hhhhhcCceEEeeEE-------EeeeCCe
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLA-EEGKAK-AIAFDEIDK-A------PEEKKRGITIATAHV-------EYETAKR 128 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~-~~~~~~~d~-~------~~e~~~g~t~~~~~~-------~~~~~~~ 128 (451)
...|+++|..|+||||++..|.+... ..+... ......... . ...+..|+......- .....+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 35899999999999999999987532 112111 111100000 0 011112333221110 0123466
Q ss_pred eEEEEecCChHHHHH---HHHHhc---ccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCCh
Q 013007 129 HYAHVDCPGHADYVK---NMITGA---AQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVED 196 (451)
Q Consensus 129 ~i~iiDtPG~~~~~~---~~~~~~---~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~ 196 (451)
.+.+|||+|...... ..+..+ ...+-.+||+|++.+.. ...+.+......++..+ ++||+|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~-~~~~~~~~f~~~~~~~~--I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD-TLDEVISAYQGHGIHGC--IITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH-HHHHHHHHhcCCCCCEE--EEEeeeCCCC
Confidence 789999999443211 112222 23456789999975322 12233344455677754 6899998763
No 440
>PRK13796 GTPase YqeH; Provisional
Probab=97.69 E-value=5e-05 Score=75.58 Aligned_cols=61 Identities=25% Similarity=0.341 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCCh
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGH 138 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~ 138 (451)
..++.++|.+|+|||||+|+|.+... |.. +.......+|+|.+...+.+. ....++||||.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~--~~~--------~~~~~s~~pGTT~~~~~~~l~---~~~~l~DTPGi 220 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEIT--GEK--------DVITTSRFPGTTLDKIEIPLD---DGSFLYDTPGI 220 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcc--Ccc--------ceEEecCCCCccceeEEEEcC---CCcEEEECCCc
Confidence 35899999999999999999986431 110 112234456888877665553 22589999995
No 441
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.68 E-value=5.7e-05 Score=75.07 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH--HH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY--VK 143 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~--~~ 143 (451)
.++.++|.+|+|||||+|+|++...... +........|+|.......+ +..+.++||||.... +.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~----------~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~ 221 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK----------DVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINSHQMA 221 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc----------ceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCChhHhh
Confidence 6999999999999999999996522110 11122334577876654443 234689999995321 11
Q ss_pred HHH-----Hh---cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 144 NMI-----TG---AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 144 ~~~-----~~---~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
..+ .. -.......+.++..+.+.-.....+..+...+. .+.++.+|-+...
T Consensus 222 ~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~-~~~~~~~~~~~~h 280 (360)
T TIGR03597 222 HYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKT-SFTFYVSNELNIH 280 (360)
T ss_pred hhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCce-EEEEEccCCceeE
Confidence 111 11 123455666666655333222212222222222 3566777766654
No 442
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.66 E-value=0.00012 Score=68.97 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
.+.+.++.|+|-+|+|||||+|++........ ..+.+ -.+.|+|+.+....--.+...+.++||||
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~-k~a~v---------G~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK-KAARV---------GAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc-cceec---------cCCCCceeeehhheEeccCCceEEecCCC
Confidence 45678999999999999999999976554443 22221 23458998886533333455689999999
No 443
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.66 E-value=5.9e-05 Score=72.60 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHh-cCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAE-EGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADY 141 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~-~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~ 141 (451)
..++++|++|+|||||+|.|++.... .|... ....+.+++|.......+.. ...++||||..+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~---------~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEIS---------EKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccccee---------ccCCCCCcccceEEEEEcCC---CCEEEECCCCCcc
Confidence 58999999999999999999865322 12111 01122234555554444432 2379999998664
No 444
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.66 E-value=0.00014 Score=64.13 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=77.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhh-hcCceEE--ee--EEEeeeCCeeEEEEecCChHHHHHH
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEK-KRGITIA--TA--HVEYETAKRHYAHVDCPGHADYVKN 144 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~-~~g~t~~--~~--~~~~~~~~~~i~iiDtPG~~~~~~~ 144 (451)
.-+..|+||||+.-.|.......|+................ -++.... .. ........+.+.|+|||+... ..
T Consensus 5 ~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~--~~ 82 (169)
T cd02037 5 MSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG--DE 82 (169)
T ss_pred ecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc--HH
Confidence 34558899999999998888777766554322211110000 0000000 00 000112467799999998532 22
Q ss_pred HHHh--cccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 145 MITG--AAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 145 ~~~~--~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
.... +..+|.+++|+.+.......+.+.+..+...+.+.+-+++|+.+..
T Consensus 83 ~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 83 HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 2222 3578999999988876667788888999999999777899999853
No 445
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.65 E-value=0.00042 Score=67.35 Aligned_cols=148 Identities=23% Similarity=0.231 Sum_probs=79.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCcccee-eeec----cCC-c--hhhhhcCceEEeeEEEee--------------
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI-AFDE----IDK-A--PEEKKRGITIATAHVEYE-------------- 124 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~-~~~~----~d~-~--~~e~~~g~t~~~~~~~~~-------------- 124 (451)
...+-|-=|||||||+++|+.... |+..+. ++.. .|. . ....+.-..+....+.+.
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 457889999999999999986544 443332 2211 121 1 000000011111122222
Q ss_pred -eCCeeEEEEecCChHH-------HHH-HHHHhcccCCEEEEEEeCCCCCCccH---HHHHHHHHHcCCCeEEEEEeecc
Q 013007 125 -TAKRHYAHVDCPGHAD-------YVK-NMITGAAQMDGGILVVSAPDGPMPQT---KEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 125 -~~~~~i~iiDtPG~~~-------~~~-~~~~~~~~~d~~ilVvda~~g~~~~t---~~~l~~~~~~~ip~iivviNK~D 192 (451)
.......+|.|-|..+ |.. ..+......|.++-||||.+...... .....++.. --+ +++||.|
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~-ivlNK~D 156 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADV-IVLNKTD 156 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcE-EEEeccc
Confidence 2235678999999444 222 22223345789999999987544332 122222222 224 6899999
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccc
Q 013007 193 LVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (451)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa 228 (451)
++++++ .+.+ +..+..+.- ..+++..|.
T Consensus 157 lv~~~~-l~~l----~~~l~~lnp---~A~i~~~~~ 184 (323)
T COG0523 157 LVDAEE-LEAL----EARLRKLNP---RARIIETSY 184 (323)
T ss_pred CCCHHH-HHHH----HHHHHHhCC---CCeEEEccc
Confidence 998654 4433 344554432 467887775
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.65 E-value=0.00038 Score=71.02 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hcCccceeeeeccCCc--------hh-hhhcCceEEeeEE-------EeeeCCe
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGKAKAIAFDEIDKA--------PE-EKKRGITIATAHV-------EYETAKR 128 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~-~~g~~~~~~~~~~d~~--------~~-e~~~g~t~~~~~~-------~~~~~~~ 128 (451)
..++++|..|+||||++..|..... ..|....... ..|.. .. ....|+......- .....++
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI-~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALL-TTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE-eCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 4799999999999999999997663 3443222111 11221 00 1222333221110 0123456
Q ss_pred eEEEEecCChHHHH---HHHHHhccc---CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 129 HYAHVDCPGHADYV---KNMITGAAQ---MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 129 ~i~iiDtPG~~~~~---~~~~~~~~~---~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+.+|||+|..... .+....+.. ..-.+||+|++.+. ....+.+......++.. +++||+|...
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~f~~~~~~g--~IlTKlDet~ 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQAYRGPGLAG--CILTKLDEAA 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHHhccCCCCE--EEEeCCCCcc
Confidence 78999999932221 121121211 23378999997543 12223334444456653 4689999765
No 447
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.64 E-value=0.00051 Score=54.09 Aligned_cols=76 Identities=29% Similarity=0.256 Sum_probs=60.9
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeec-ceeccEEecCCeEEEEeccccccCC-
Q 013007 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMF-KKILDRGEAGDNVGLLLRGLKREDV- 344 (451)
Q Consensus 267 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~-~~~v~~a~aG~~v~l~l~~~~~~~i- 344 (451)
+..|.++..+++.|.+++..|.+|+|++||.+..+. ...+|++|... ..++++|.||+.|.+. |++ ++
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~------~~gkVr~l~d~~g~~v~~a~Ps~~V~I~--G~~--~~P 71 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT------TYGKVRAMFDENGKRVKEAGPSTPVEIL--GLK--GVP 71 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc------cccEEEEEECCCCCCCCEECCCCcEEEc--CCC--CCC
Confidence 356788888999999999999999999999998754 24699999765 5899999999998773 443 33
Q ss_pred CCCeEEec
Q 013007 345 QRGQVIAK 352 (451)
Q Consensus 345 ~~G~vl~~ 352 (451)
..||.+..
T Consensus 72 ~aGd~~~~ 79 (95)
T cd03702 72 QAGDKFLV 79 (95)
T ss_pred CCCCEEEE
Confidence 56776653
No 448
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.63 E-value=0.00049 Score=53.96 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=51.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH-HH
Q 013007 68 VGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN-MI 146 (451)
Q Consensus 68 I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~-~~ 146 (451)
+++.|..|+||||+...|...+.+.|...... | .+.++|+|+..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~----~------------------------d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI----D------------------------DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE----C------------------------CEEEEeCCCCccchhhhhh
Confidence 67889999999999999988776655432211 1 6899999996543321 24
Q ss_pred HhcccCCEEEEEEeCCCCCCcc
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQ 168 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~ 168 (451)
..+..+|.++++++........
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~ 75 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLG 75 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHH
Confidence 4566799999999887644433
No 449
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.63 E-value=0.00073 Score=54.24 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecc-----------eeccEEecCCeEEEE
Q 013007 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFK-----------KILDRGEAGDNVGLL 335 (451)
Q Consensus 267 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~-----------~~v~~a~aG~~v~l~ 335 (451)
...|.++-.++|.|+++..-|.+|+|++||.+.++..+ +++..+|++|...+ .+++++.|..-+-+.
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~--Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~ 79 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLN--GPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKIL 79 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCC--CCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEE
Confidence 35677888899999999999999999999999997643 25778999997654 388999976666666
Q ss_pred eccccccCCCCCeEEe
Q 013007 336 LRGLKREDVQRGQVIA 351 (451)
Q Consensus 336 l~~~~~~~i~~G~vl~ 351 (451)
..+++ ++..|+.+.
T Consensus 80 ~~gL~--~v~aG~~~~ 93 (110)
T cd03703 80 APDLE--KAIAGSPLL 93 (110)
T ss_pred eCCCc--cccCCCEEE
Confidence 55543 557787664
No 450
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00035 Score=74.65 Aligned_cols=125 Identities=20% Similarity=0.264 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH-hcCc-cceeeeeccCCch---hh------hhcCceEEeeEEE-------eeeCC
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLA-EEGK-AKAIAFDEIDKAP---EE------KKRGITIATAHVE-------YETAK 127 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~-~~g~-~~~~~~~~~d~~~---~e------~~~g~t~~~~~~~-------~~~~~ 127 (451)
..|+++|+.|+||||++..|..... ..|. ...... .|... .| ...|+.+....-. -...+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit--~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT--TDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec--CcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4789999999999999999987663 4443 222211 12111 01 1112222110000 01235
Q ss_pred eeEEEEecCChH----HHHHHHHH--hcccCCEEEEEEeCCCCCCccHHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 013007 128 RHYAHVDCPGHA----DYVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHILLARQ---VGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 128 ~~i~iiDtPG~~----~~~~~~~~--~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~---~~ip~iivviNK~D~~~ 195 (451)
+.+.||||||.. ....+... .....+-.+||+|++.+.. ...+.+..... .++.. +++||+|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~g--lIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDG--CIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCE--EEEeccCCCC
Confidence 679999999922 22222211 1224567899999985211 11122222222 24554 4699999864
No 451
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00039 Score=68.65 Aligned_cols=127 Identities=20% Similarity=0.245 Sum_probs=74.2
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-hhhhh------cCceEEee-------------EEE
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEEKK------RGITIATA-------------HVE 122 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-~~e~~------~g~t~~~~-------------~~~ 122 (451)
++...|.++|--|+||||.+..|...+...|+....++....+. ..++- -++.+... .-.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 44568999999999999999999988877666655443322111 11111 11111110 001
Q ss_pred eeeCCeeEEEEecCChH----HHHHHHHH--hcccCCEEEEEEeCCCCCCccHHHHHH--HHHHcCCCeEEEEEeeccCC
Q 013007 123 YETAKRHYAHVDCPGHA----DYVKNMIT--GAAQMDGGILVVSAPDGPMPQTKEHIL--LARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 123 ~~~~~~~i~iiDtPG~~----~~~~~~~~--~~~~~d~~ilVvda~~g~~~~t~~~l~--~~~~~~ip~iivviNK~D~~ 194 (451)
+....+.+.|+||+|-. +.+.++.. .....|=++||+||..| |...... +-..+++-- |+++|+|-.
T Consensus 178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itG--vIlTKlDGd 252 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITG--VILTKLDGD 252 (451)
T ss_pred HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCce--EEEEcccCC
Confidence 12234679999999933 34444332 34468999999999764 3322221 122345552 578999965
No 452
>PHA02518 ParA-like protein; Provisional
Probab=97.59 E-value=0.0012 Score=60.23 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=68.6
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhh----hhcCceEEeeEEEe----------eeCCeeEE
Q 013007 67 NVGTIGH-VDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEE----KKRGITIATAHVEY----------ETAKRHYA 131 (451)
Q Consensus 67 ~I~viG~-~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e----~~~g~t~~~~~~~~----------~~~~~~i~ 131 (451)
.|++.+. .|+||||+.-.|...+...|+............... +..+... .....+ -...+.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~~~d~v 80 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDWAEAREEGEPL-IPVVRMGKSIRADLPKVASGYDYV 80 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHHHHhcccCCCC-CchhhccHHHHHHHHHHhccCCEE
Confidence 4666655 669999999999887777676544332111000000 0000000 000000 01346799
Q ss_pred EEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHH-----cCCCeEEEEEeeccCC
Q 013007 132 HVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ-----VGVPSLVCFLNKVDLV 194 (451)
Q Consensus 132 iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~-----~~ip~iivviNK~D~~ 194 (451)
||||||... ..+...+..+|.+|+++.++.-......+.+..+.. .+.+.+.++.|+.+..
T Consensus 81 iiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 81 VVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred EEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 999998643 334556778999999998875433333333333332 1466566777877643
No 453
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.56 E-value=0.00035 Score=67.50 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeecc------CCchh-hhhcCceEEeeEE-------------Eeee
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEI------DKAPE-EKKRGITIATAHV-------------EYET 125 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~------d~~~~-e~~~g~t~~~~~~-------------~~~~ 125 (451)
-.|.++|--|+||||.+..|.......|+.....+..+ |.... ...-++.+..++. .|..
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKk 181 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKK 181 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHh
Confidence 47799999999999999999888888887766543322 11111 1111333322211 1334
Q ss_pred CCeeEEEEecCChHH----HHHHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHH--HcCCCeEEEEEeeccCC
Q 013007 126 AKRHYAHVDCPGHAD----YVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLAR--QVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~----~~~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~--~~~ip~iivviNK~D~~ 194 (451)
++..+.|+||.|... ...+|.... -..|-+|+|+||+-| |..+....+- ..++- -+++||+|-.
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg--~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVG--AVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccc--eEEEEecccC
Confidence 577899999999322 445554432 358999999999864 3333222222 22344 3568999954
No 454
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.55 E-value=0.00063 Score=54.66 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=51.6
Q ss_pred EEEEc-CCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHHHH
Q 013007 68 VGTIG-HVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMI 146 (451)
Q Consensus 68 I~viG-~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~ 146 (451)
|++.| ..|+||||+.-.|.....+.|...... ..|.. +.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~--d~d~~---------------------~d~viiD~p~~~~~~--~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLI--DLDPQ---------------------YDYIIIDTPPSLGLL--TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE--eCCCC---------------------CCEEEEeCcCCCCHH--HH
Confidence 56677 578999999999987766555432221 11111 568999999864432 22
Q ss_pred HhcccCCEEEEEEeCCCCCCccHHHH
Q 013007 147 TGAAQMDGGILVVSAPDGPMPQTKEH 172 (451)
Q Consensus 147 ~~~~~~d~~ilVvda~~g~~~~t~~~ 172 (451)
..+..+|.++++++++........+.
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~ 82 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKL 82 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHH
Confidence 55677999999998875433333333
No 455
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=0.00073 Score=59.90 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCc-hhhhhcCceEEee----EEEeee----C--CeeEEEEe
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA-PEEKKRGITIATA----HVEYET----A--KRHYAHVD 134 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~-~~e~~~g~t~~~~----~~~~~~----~--~~~i~iiD 134 (451)
++|++.|.+|+|||||+..+.+.....|.....+ ..... ...+..+..+... ...+.. . ...=.+.|
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGF--YTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVN 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--EcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEe
Confidence 4899999999999999999887765544321111 11100 0011111111100 000000 0 00011334
Q ss_pred cCChHHHHHHHHH-hcccCCEEEEEEe---CCCCCCccHHHHHHHHHHcCCCeEEEEEeecc
Q 013007 135 CPGHADYVKNMIT-GAAQMDGGILVVS---APDGPMPQTKEHILLARQVGVPSLVCFLNKVD 192 (451)
Q Consensus 135 tPG~~~~~~~~~~-~~~~~d~~ilVvd---a~~g~~~~t~~~l~~~~~~~ip~iivviNK~D 192 (451)
.-|.+.+...... .+..+|+ +++| ..+....+..+.+..+...+.+ +|+++||..
T Consensus 79 lsgle~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~-~i~v~h~~~ 137 (174)
T PRK13695 79 LEDLERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKP-VIATLHRRS 137 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCe-EEEEECchh
Confidence 4444555444333 3345666 6888 5555556667777777777887 778999853
No 456
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.46 E-value=0.00075 Score=64.03 Aligned_cols=83 Identities=28% Similarity=0.362 Sum_probs=61.5
Q ss_pred cCCEEEEEEeCCCCCC--ccHHHHHHHHHHcCCCeEEEEEeeccCCChHHHHHHHHHHHHHHHHhcCCCCCCCCeeeccc
Q 013007 151 QMDGGILVVSAPDGPM--PQTKEHILLARQVGVPSLVCFLNKVDLVEDEELLELVEMELRELLSFYKFPGDEIPIIRGSA 228 (451)
Q Consensus 151 ~~d~~ilVvda~~g~~--~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pvi~~Sa 228 (451)
..|-+++|+.+.++.. .+..+.|-.+...|+.++ +++||+|+.++++... ++.....+.+|+ +++.+|+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pv-IvlnK~DL~~~~~~~~---~~~~~~y~~~gy-----~v~~~s~ 149 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPV-IVLNKIDLLDDEEAAV---KELLREYEDIGY-----PVLFVSA 149 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEE-EEEEccccCcchHHHH---HHHHHHHHhCCe-----eEEEecC
Confidence 4788889998887654 455667778888999966 6899999998665432 345556666654 7999999
Q ss_pred cccccCCCcccchhhHHHHHHHHH
Q 013007 229 TSALQGKNEEIGKKAILKLMDAVD 252 (451)
Q Consensus 229 ~~g~~~~~~~~~~~~i~~Ll~~l~ 252 (451)
+++ +++.+|.+.|.
T Consensus 150 ~~~----------~~~~~l~~~l~ 163 (301)
T COG1162 150 KNG----------DGLEELAELLA 163 (301)
T ss_pred cCc----------ccHHHHHHHhc
Confidence 988 77777777764
No 457
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.45 E-value=0.00011 Score=73.27 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=41.9
Q ss_pred cCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 61 RTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 61 ~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
..++.++|+++|.+|+|||++||+|.+. .... ..+..|.|-....+.++ ..+.+.||||
T Consensus 310 ~~~~~vtVG~VGYPNVGKSSTINaLvG~------KkVs---------VS~TPGkTKHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 310 RYKDVVTVGFVGYPNVGKSSTINALVGR------KKVS---------VSSTPGKTKHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred CCCceeEEEeecCCCCchhHHHHHHhcC------ceee---------eecCCCCcceeEEEEcC---CCceecCCCC
Confidence 3455799999999999999999999843 2221 12334666665555443 4588999999
No 458
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.00033 Score=63.44 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=86.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCChHHHHHH--
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKN-- 144 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~-- 144 (451)
+|.++|+--+|||++-....+....+.. -+ .|....+|.+. +...-..+.+||.||+.+|..-
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPneT-lf----------lESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~ 93 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPNET-LF----------LESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSF 93 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCCce-eE----------eeccCcccHhh----hhhhhcceEEeecCCccccCCCcc
Confidence 5999999999999998776644221110 00 00000111110 1112245789999998886432
Q ss_pred -HHHhcccCCEEEEEEeCCCCCC-ccHHHHHHHHHHcC----CCeEEEEEeeccCCChHHHHH---HHHHHHHHHHHhcC
Q 013007 145 -MITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQVG----VPSLVCFLNKVDLVEDEELLE---LVEMELRELLSFYK 215 (451)
Q Consensus 145 -~~~~~~~~d~~ilVvda~~g~~-~~t~~~l~~~~~~~----ip~iivviNK~D~~~~~~~~~---~~~~~~~~~l~~~~ 215 (451)
...-.+.+-+.++|||+.+... +-++.|+...+... +. +=|++.|+|-..++...+ .+.+...+-++..|
T Consensus 94 D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in-~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~g 172 (347)
T KOG3887|consen 94 DYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNIN-FEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAG 172 (347)
T ss_pred CHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCce-EEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhh
Confidence 2233567889999999987543 44555666666553 44 567899999876443322 23334445556666
Q ss_pred CCCCCCCeeeccccc
Q 013007 216 FPGDEIPIIRGSATS 230 (451)
Q Consensus 216 ~~~~~~pvi~~Sa~~ 230 (451)
..+-.+.+..+|-..
T Consensus 173 le~v~vsf~LTSIyD 187 (347)
T KOG3887|consen 173 LEKVQVSFYLTSIYD 187 (347)
T ss_pred hccceEEEEEeeecc
Confidence 644445566666544
No 459
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.42 E-value=0.00074 Score=62.24 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=50.9
Q ss_pred eeEEEEecCChHHHHHH-HHHhccc--CCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 128 RHYAHVDCPGHADYVKN-MITGAAQ--MDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~-~~~~~~~--~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
+.+.++|||-....... +...+.. +|.+++|+.+......++.+.+..++..+.+..-+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 78999999865333322 2233333 5899999999887778889999999999988777899999765
No 460
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.42 E-value=0.0028 Score=59.54 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=47.9
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
.+.+.++|||+-... .+...+..+|.+++|+++...-...+......+...+.+.+.+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 467999999985442 344556679999999998765445555556666677887667899999863
No 461
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.38 E-value=0.0019 Score=63.02 Aligned_cols=88 Identities=24% Similarity=0.291 Sum_probs=47.0
Q ss_pred eeEEEEecCChHHHHHHH--------HHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCChHHH
Q 013007 128 RHYAHVDCPGHADYVKNM--------ITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVEDEEL 199 (451)
Q Consensus 128 ~~i~iiDtPG~~~~~~~~--------~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~~~~~ 199 (451)
....+|.|-|..+-..-+ .......|.++.|||+........... ....+...-.+ +++||+|+.++.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~-IvlnK~Dl~~~~-- 166 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADR-ILLTKTDVAGEA-- 166 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCE-EEEeccccCCHH--
Confidence 457899999966532211 112224689999999986432111111 11122222335 689999999742
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCeeecc
Q 013007 200 LELVEMELRELLSFYKFPGDEIPIIRGS 227 (451)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~~~~pvi~~S 227 (451)
+ ++.+.++.+. ...+++..+
T Consensus 167 -~----~~~~~l~~ln---p~a~i~~~~ 186 (318)
T PRK11537 167 -E----KLRERLARIN---ARAPVYTVV 186 (318)
T ss_pred -H----HHHHHHHHhC---CCCEEEEec
Confidence 2 3444444432 235666543
No 462
>PRK00098 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00023 Score=68.84 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
..++++|++|+|||||+|+|.+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999854
No 463
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.37 E-value=0.0025 Score=64.18 Aligned_cols=128 Identities=21% Similarity=0.275 Sum_probs=74.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHH-HHhcCcccee---------------eee------ccCCchh--------------
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKV-LAEEGKAKAI---------------AFD------EIDKAPE-------------- 108 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~-~~~~g~~~~~---------------~~~------~~d~~~~-------------- 108 (451)
..+|+++|.-.+|||+.+..+... +...|.+... ++. ..|-+.+
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 469999999999999999988643 2222322110 000 0111111
Q ss_pred --hhhcCceEEeeEEEeeeCC---eeEEEEecCChH-------------HHHHHHHHhcccCCEEEEEEeCCCCCCcc--
Q 013007 109 --EKKRGITIATAHVEYETAK---RHYAHVDCPGHA-------------DYVKNMITGAAQMDGGILVVSAPDGPMPQ-- 168 (451)
Q Consensus 109 --e~~~g~t~~~~~~~~~~~~---~~i~iiDtPG~~-------------~~~~~~~~~~~~~d~~ilVvda~~g~~~~-- 168 (451)
.-..|.|+....+.....+ .++.++|.||.. +.....-.++.+.+++||+|-- |....
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQD--GSVDAER 465 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQD--GSVDAER 465 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEecc--CCcchhh
Confidence 1123666655444444332 468899999942 2445555667789999998842 22211
Q ss_pred --HHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 169 --TKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 169 --t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.-.....+.-.|.. -|+|++|+|+.+
T Consensus 466 SnVTDLVsq~DP~GrR-TIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDPHGRR-TIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCCCCCe-eEEEEeecchhh
Confidence 12233344455766 568999999975
No 464
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.33 E-value=0.0043 Score=61.11 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013007 67 NVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~ 88 (451)
-..+.|.-|+|||||+++|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5788899999999999999864
No 465
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.29 E-value=0.00078 Score=76.96 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=60.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhc--CceEEeeEEEeeeCCeeEEEEecCC----h--
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKR--GITIATAHVEYETAKRHYAHVDCPG----H-- 138 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~--g~t~~~~~~~~~~~~~~i~iiDtPG----~-- 138 (451)
=..++|++|+||||++..- +.. +.. .+....+..+ |-|.....+ | ..+-++|||+| +
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~-------~pl---~~~~~~~~~~~~~~t~~c~ww-f---~~~avliDtaG~y~~~~~ 177 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLK-------FPL---AERLGAAALRGVGGTRNCDWW-F---TDEAVLIDTAGRYTTQDS 177 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCC-------CcC---chhhccccccCCCCCcccceE-e---cCCEEEEcCCCccccCCC
Confidence 4689999999999999875 110 000 0000001111 112221111 1 23467999999 1
Q ss_pred ---------HHHHHHHHHh--cccCCEEEEEEeCCCCCC---ccHHHHHHHH--------H--HcCCCeEEEEEeeccCC
Q 013007 139 ---------ADYVKNMITG--AAQMDGGILVVSAPDGPM---PQTKEHILLA--------R--QVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 139 ---------~~~~~~~~~~--~~~~d~~ilVvda~~g~~---~~t~~~l~~~--------~--~~~ip~iivviNK~D~~ 194 (451)
..|+....+. -+-.|++|++||+.+=.. .+-..+...+ . ...+| +.|++||||+.
T Consensus 178 ~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~P-VYvv~Tk~Dll 256 (1169)
T TIGR03348 178 DPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFP-VYLVLTKADLL 256 (1169)
T ss_pred cccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEEecchhh
Confidence 1133333332 234799999999875332 1111222221 1 23578 77999999988
Q ss_pred C
Q 013007 195 E 195 (451)
Q Consensus 195 ~ 195 (451)
.
T Consensus 257 ~ 257 (1169)
T TIGR03348 257 A 257 (1169)
T ss_pred c
Confidence 5
No 466
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.29 E-value=0.0012 Score=60.17 Aligned_cols=68 Identities=25% Similarity=0.199 Sum_probs=50.3
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCCC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLVE 195 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~~ 195 (451)
.+.+.|+|||..... ......+..+|.+|+|+++...-.....+.+..+...+.+.+-+|+||.|...
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 457899999973221 11122345689999999998776677788888888889887788999999653
No 467
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.28 E-value=0.0018 Score=59.44 Aligned_cols=68 Identities=13% Similarity=-0.079 Sum_probs=39.6
Q ss_pred CCeeEEEEecCChHHHHHHHHHhc--ccCCEEEEEEeCCCCCCccHHHHHHHHHHc----CCCeEEEEEeeccCC
Q 013007 126 AKRHYAHVDCPGHADYVKNMITGA--AQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVDLV 194 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~~~~~~~~~~--~~~d~~ilVvda~~g~~~~t~~~l~~~~~~----~ip~iivviNK~D~~ 194 (451)
+.+.+.+|||||....... ...+ ..+|.++++++.+.--.......++.++.+ +.+...+++||+|..
T Consensus 115 ~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 3578999999885421111 0112 379999999987642222233333334433 445455899999953
No 468
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.28 E-value=0.00067 Score=61.01 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=74.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchh-------h-hhcCce-----E---Ee---------------
Q 013007 70 TIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPE-------E-KKRGIT-----I---AT--------------- 118 (451)
Q Consensus 70 viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~-------e-~~~g~t-----~---~~--------------- 118 (451)
.-+..|+||||+.-.|...+...|+.........+.... + ...+.. . +.
T Consensus 4 ~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFESQDIYQGEEYLDPELL 83 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCCHHHHHHHCHCHHHHHH
T ss_pred EcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccchhhhhhhhhhhHHHHH
Confidence 345588999999999998888877765544322111000 0 000000 0 00
Q ss_pred --eEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcC--CCeEEEEEeeccCC
Q 013007 119 --AHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG--VPSLVCFLNKVDLV 194 (451)
Q Consensus 119 --~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~--ip~iivviNK~D~~ 194 (451)
....+....+.+.|+|||+..... +...+..+|.+|++++++.-....+...+..+...+ .+.+-+|+||.+.-
T Consensus 84 ~~~l~~l~~~~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 84 REILESLIKSDYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHHHHHHTTSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred HHHHHHhhhccccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 000001123789999998855433 445567899999999987544455555666666666 33567899999876
Q ss_pred Ch
Q 013007 195 ED 196 (451)
Q Consensus 195 ~~ 196 (451)
+.
T Consensus 162 ~~ 163 (195)
T PF01656_consen 162 NE 163 (195)
T ss_dssp CH
T ss_pred cc
Confidence 53
No 469
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.23 E-value=0.0035 Score=58.24 Aligned_cols=123 Identities=19% Similarity=0.118 Sum_probs=69.2
Q ss_pred EEEEEcC-CCCcHHHHHHHHHHHHHhcCccceeeeeccCCc----hhhhhcCce----EE-eeEEE----------eeeC
Q 013007 67 NVGTIGH-VDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKA----PEEKKRGIT----IA-TAHVE----------YETA 126 (451)
Q Consensus 67 ~I~viG~-~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~----~~e~~~g~t----~~-~~~~~----------~~~~ 126 (451)
.|++.+. .|+||||+.-.|.......|+............ -..+..... .. ..... ....
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 82 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQ 82 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHhhccccCCCccceecCCCHHHHHHHHHHHHhhC
Confidence 4555555 779999999999888877776544332111000 000000000 00 00000 1123
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH------HcCCCeEEEEEeecc
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR------QVGVPSLVCFLNKVD 192 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~------~~~ip~iivviNK~D 192 (451)
.+.+.||||||+.. ..+...+..+|.+|+.+.++.-....+.+.+..+. ..+++. .+++|.++
T Consensus 83 ~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~-~iv~~~~~ 151 (231)
T PRK13849 83 GFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPT-AILRQRVP 151 (231)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCe-EEEEEecc
Confidence 57899999999765 33455677899999998876533333334433322 236674 47999987
No 470
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.23 E-value=0.0029 Score=49.96 Aligned_cols=76 Identities=26% Similarity=0.262 Sum_probs=59.4
Q ss_pred eEEEEEEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEee-cceeccEEecCCeEEEEeccccccCCC
Q 013007 267 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEM-FKKILDRGEAGDNVGLLLRGLKREDVQ 345 (451)
Q Consensus 267 ~~~v~~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~-~~~~v~~a~aG~~v~l~l~~~~~~~i~ 345 (451)
+..|.++-.+++.|.+++..|.+|+|++||.+..+. ...+|+.+.. .++.+.+|.|++.|.+. |++ ....
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~------~~GkVr~~~d~~g~~v~~a~Ps~~v~i~--g~~-~~p~ 72 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG------TYGKIRTMVDENGKALLEAGPSTPVEIL--GLK-DVPK 72 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC------ccceEEEEECCCCCCccccCCCCCEEEe--eec-CCcc
Confidence 356778888999999999999999999999998754 3479999976 46899999999988553 333 2345
Q ss_pred CCeEEe
Q 013007 346 RGQVIA 351 (451)
Q Consensus 346 ~G~vl~ 351 (451)
.||.+-
T Consensus 73 aGd~~~ 78 (95)
T cd03701 73 AGDGVL 78 (95)
T ss_pred CCCEEE
Confidence 666554
No 471
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.23 E-value=0.0014 Score=60.56 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=74.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCC--eeEEEEecCChHH
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAK--RHYAHVDCPGHAD 140 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~--~~i~iiDtPG~~~ 140 (451)
.-.+||..+|.+|-|||||++.|.+...+..... .. ..++........+..++ .+++++||.|..|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~-------H~-----~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPST-------HT-----LPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCc-------cC-----CCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 3468999999999999999999986533221110 00 11222222222222222 4578999999544
Q ss_pred ---------------------HHHH------HHHhc--ccCCEEEEEEeCCC-CCCccHHHHHHHHHHcCCCeEEEEEee
Q 013007 141 ---------------------YVKN------MITGA--AQMDGGILVVSAPD-GPMPQTKEHILLARQVGVPSLVCFLNK 190 (451)
Q Consensus 141 ---------------------~~~~------~~~~~--~~~d~~ilVvda~~-g~~~~t~~~l~~~~~~~ip~iivviNK 190 (451)
|+.+ ++..+ ....++++.|..+. ++...+.-.+..+.. .+. +|-+|-|
T Consensus 108 QinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVN-IIPvIAK 185 (406)
T KOG3859|consen 108 QINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVN-IIPVIAK 185 (406)
T ss_pred ccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhh-hHHHHHH
Confidence 2222 11222 23578899998763 333333333333322 344 6678899
Q ss_pred ccCCChHHHHHHHHHHHHHHHHh
Q 013007 191 VDLVEDEELLELVEMELRELLSF 213 (451)
Q Consensus 191 ~D~~~~~~~~~~~~~~~~~~l~~ 213 (451)
.|.+...+ +...+..+..-|..
T Consensus 186 aDtisK~e-L~~FK~kimsEL~s 207 (406)
T KOG3859|consen 186 ADTISKEE-LKRFKIKIMSELVS 207 (406)
T ss_pred hhhhhHHH-HHHHHHHHHHHHHh
Confidence 99987544 34444444433433
No 472
>CHL00175 minD septum-site determining protein; Validated
Probab=97.21 E-value=0.0042 Score=59.59 Aligned_cols=65 Identities=20% Similarity=0.311 Sum_probs=47.0
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
.+.+.|+|||+.... .....+..+|.+++|++.+..-...+...+..+...+.+.+-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 567999999885432 33344567999999998775545556666677777777667789999984
No 473
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0038 Score=59.85 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=71.9
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCC------chh-hhhcCceEEeeE-------EEe-----
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDK------APE-EKKRGITIATAH-------VEY----- 123 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~------~~~-e~~~g~t~~~~~-------~~~----- 123 (451)
+....|.++|-.|+||||.+..|.......|......+..+-+ ... -..-|+.+-... +-|
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3456889999999999999999999988888765443321110 000 011133322211 111
Q ss_pred -eeCCeeEEEEecCC--hH--HHHHHHH---HhcccCC-----EEEEEEeCCCCCCccHHHHHHHH-HHcCCCeEEEEEe
Q 013007 124 -ETAKRHYAHVDCPG--HA--DYVKNMI---TGAAQMD-----GGILVVSAPDGPMPQTKEHILLA-RQVGVPSLVCFLN 189 (451)
Q Consensus 124 -~~~~~~i~iiDtPG--~~--~~~~~~~---~~~~~~d-----~~ilVvda~~g~~~~t~~~l~~~-~~~~ip~iivviN 189 (451)
...+..+.|+||+| |. ..+.++. +-+...+ -+++++||+.|-.. ....+.. ...++. - +++|
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F~eav~l~-G-iIlT 292 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIFNEAVGLD-G-IILT 292 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHHHHhcCCc-e-EEEE
Confidence 12356799999999 22 2333332 2222223 37888899875321 2222222 234566 4 5799
Q ss_pred eccCC
Q 013007 190 KVDLV 194 (451)
Q Consensus 190 K~D~~ 194 (451)
|+|-.
T Consensus 293 KlDgt 297 (340)
T COG0552 293 KLDGT 297 (340)
T ss_pred ecccC
Confidence 99954
No 474
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.008 Score=51.52 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=29.0
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccce
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (451)
..++|.+.|.||+|||||+..+...+.+.|....
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 3579999999999999999999988888775443
No 475
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0053 Score=58.65 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=75.1
Q ss_pred ceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeE-------------
Q 013007 64 LHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHY------------- 130 (451)
Q Consensus 64 ~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i------------- 130 (451)
....|+++|.-|+|||||++.|.....+..+..... .....-..|+.+..|..... ....+.+
T Consensus 187 df~VIgvlG~QgsGKStllslLaans~~~dyr~yvF-RpvS~Ea~E~~~~qt~~Id~---~i~q~~i~fldtqpl~sfsi 262 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVF-RPVSPEADECIFAQTHKIDP---NIGQKSILFLDTQPLQSFSI 262 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccChHHhhHHHhc-ccCChhhhhhhccceecccc---ccccceEEeeccccccchHH
Confidence 346789999999999999999986544333222111 00111112222223322211 1112223
Q ss_pred ----EEEecCC---------hHH--HHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc----------------
Q 013007 131 ----AHVDCPG---------HAD--YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV---------------- 179 (451)
Q Consensus 131 ----~iiDtPG---------~~~--~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~---------------- 179 (451)
.+.|+|- |.+ -+..|..-+..+..+|+|+|.-. ..+....+..+...
T Consensus 263 ~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~--d~~lir~L~~Ae~~rP~laifrh~~~~~r~ 340 (491)
T KOG4181|consen 263 RERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLA--DEQLIRLLNAAERLRPTLAIFRHCKGYVRD 340 (491)
T ss_pred HhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchh--HHHHHHHHHHHHhhCcccCccccccccccc
Confidence 3455554 222 24556666778999999998643 12333334333321
Q ss_pred CCCeEEEEEeeccCCC-hHHHHHHHHHHHHHHHHh
Q 013007 180 GVPSLVCFLNKVDLVE-DEELLELVEMELRELLSF 213 (451)
Q Consensus 180 ~ip~iivviNK~D~~~-~~~~~~~~~~~~~~~l~~ 213 (451)
..|++|++-||.-.++ .....+.+-..+..+++.
T Consensus 341 ~~p~lVFv~~KA~riDf~pr~rerl~~~~~~l~~~ 375 (491)
T KOG4181|consen 341 HMPQLVFVRAKAHRIDFEPRQRERLDKKLAYLYGP 375 (491)
T ss_pred cCcceEEEeccccccccChHHHHHHHHHHHHHhcc
Confidence 2688999999976665 222233344444444443
No 476
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.17 E-value=0.016 Score=61.24 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=62.4
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccc-cCCCCCeEE
Q 013007 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKR-EDVQRGQVI 350 (451)
Q Consensus 272 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl 350 (451)
.+|+.+. +.++..+|..|+|+.|..|. .+.+ ....+|.||+.+++++++|..|+-|++.+.+... .+++.||+|
T Consensus 473 ~vf~~~~-~~i~G~~V~~G~i~~~~~v~-r~~~---~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l 547 (590)
T TIGR00491 473 LVFRQSK-PAIVGVEVLTGVIRQGYPLM-KDDG---ETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTL 547 (590)
T ss_pred eeeeCCC-CeEEEEEEecCEEecCCeEE-ecCC---EEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEE
Confidence 6777665 79999999999999999863 3211 2347899999999999999999999999987432 689999999
Q ss_pred ecC
Q 013007 351 AKP 353 (451)
Q Consensus 351 ~~~ 353 (451)
-..
T Consensus 548 ~~~ 550 (590)
T TIGR00491 548 YVD 550 (590)
T ss_pred EEe
Confidence 643
No 477
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.16 E-value=0.003 Score=60.15 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=40.5
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH----HcCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR----QVGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~----~~~ip~iivviNK~D~ 193 (451)
.+.+.||||||..... .+...+..+|.+|+++.++........+.+..+. ..+++...+++|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 4678999999854311 1223367799999999876533333333333332 2356645578999983
No 478
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.08 E-value=0.0051 Score=57.74 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=41.9
Q ss_pred CeeEEEEecCChHH--------HHHHHHHhcccCCEEEEEEeCCCCCC--------ccH-HHHHHHHHHcCCCeEEEEEe
Q 013007 127 KRHYAHVDCPGHAD--------YVKNMITGAAQMDGGILVVSAPDGPM--------PQT-KEHILLARQVGVPSLVCFLN 189 (451)
Q Consensus 127 ~~~i~iiDtPG~~~--------~~~~~~~~~~~~d~~ilVvda~~g~~--------~~t-~~~l~~~~~~~ip~iivviN 189 (451)
.....++.|-|..+ |...-+..--..|+++-||||.+... ... ..+.+++.+ .+ +++|
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA~A---D~--II~N 219 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIALA---DR--IIMN 219 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHhhh---he--eeec
Confidence 34578999999655 22333333335799999999975321 111 112222222 22 3689
Q ss_pred eccCCChHHHHHHHHHHH
Q 013007 190 KVDLVEDEELLELVEMEL 207 (451)
Q Consensus 190 K~D~~~~~~~~~~~~~~~ 207 (451)
|.|+++.++ ...+++.+
T Consensus 220 KtDli~~e~-~~~l~q~I 236 (391)
T KOG2743|consen 220 KTDLVSEEE-VKKLRQRI 236 (391)
T ss_pred cccccCHHH-HHHHHHHH
Confidence 999998544 44444444
No 479
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.05 E-value=0.0014 Score=57.93 Aligned_cols=45 Identities=29% Similarity=0.160 Sum_probs=34.4
Q ss_pred CEEEEEEeCCCCCCccHHHHHHH--HHHcCCCeEEEEEeeccCCChHH
Q 013007 153 DGGILVVSAPDGPMPQTKEHILL--ARQVGVPSLVCFLNKVDLVEDEE 198 (451)
Q Consensus 153 d~~ilVvda~~g~~~~t~~~l~~--~~~~~ip~iivviNK~D~~~~~~ 198 (451)
|++++|+|+...+.....+.... +...+.| +|+|+||+|+.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL~~~~~ 47 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKK-LVLVLNKIDLVPKEN 47 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCC-EEEEEehhhcCCHHH
Confidence 78999999998877776666666 3345677 678999999986443
No 480
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.99 E-value=0.00054 Score=66.56 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=0.0
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccCCchhhhhcCceEEeeEEEeeeCCeeEEEEecCC
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPG 137 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~g~t~~~~~~~~~~~~~~i~iiDtPG 137 (451)
+..++++|+|.+|+|||++||+|... ..+......|+|.....++. +..+.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~---------------k~C~vg~~pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR---------------KACNVGNVPGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh---------------ccccCCCCccchhhhhheec---cCCceeccCCc
No 481
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.98 E-value=0.0053 Score=54.09 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcC
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEG 93 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g 93 (451)
...++++|..|+|||||+++|...+...|
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g 34 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARG 34 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcC
Confidence 34789999999999999999997755444
No 482
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.95 E-value=0.00031 Score=67.93 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.3
Q ss_pred chhhhccCcceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 55 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 55 ~~~~~~~~~~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
+..++-..+..+.|+++|.+|+|||+++|.|...
T Consensus 297 Qf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 297 QFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred HHHhhccCccceeeeeecCCCCchHHHHHHHhhc
Confidence 3445666778899999999999999999999743
No 483
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.93 E-value=0.0051 Score=59.27 Aligned_cols=65 Identities=9% Similarity=-0.029 Sum_probs=39.1
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHc----CCCeEEEEEeecc
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV----GVPSLVCFLNKVD 192 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~----~ip~iivviNK~D 192 (451)
++.+.++||||.... ......+..||.+++++++..-........++.++.. +++..-+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 467999999986321 1122346679999999987643323333333333322 4454557899987
No 484
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=96.93 E-value=0.0053 Score=56.43 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=57.8
Q ss_pred eEEeeEEEeeeCCeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCC--------CCccHHHHHHHHHH------c-
Q 013007 115 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQ------V- 179 (451)
Q Consensus 115 t~~~~~~~~~~~~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g--------~~~~t~~~l~~~~~------~- 179 (451)
|.......|..+..++...|..|+.|-....+......-++|+|+.+++- -+...+|.|.+.+. +
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 33333445566677889999999999999999999999999999998752 12333455554442 1
Q ss_pred CCCeEEEEEeeccCCC
Q 013007 180 GVPSLVCFLNKVDLVE 195 (451)
Q Consensus 180 ~ip~iivviNK~D~~~ 195 (451)
.+. +|+++||-|+..
T Consensus 269 tis-vIlFLNKqDlla 283 (379)
T KOG0099|consen 269 TIS-VILFLNKQDLLA 283 (379)
T ss_pred hhh-eeEEecHHHHHH
Confidence 344 789999999874
No 485
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.83 E-value=0.0098 Score=56.12 Aligned_cols=65 Identities=18% Similarity=0.330 Sum_probs=46.4
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~ 193 (451)
.+.+.|+|||+.... .....+..+|.+++|+.+.......+...+..+...+...+.+++|+++.
T Consensus 111 ~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 367899999885432 22345677999999998876555556666667776666556789999985
No 486
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.80 E-value=0.0064 Score=57.90 Aligned_cols=66 Identities=12% Similarity=-0.009 Sum_probs=39.0
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH----HcCCCeEEEEEeeccC
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR----QVGVPSLVCFLNKVDL 193 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~----~~~ip~iivviNK~D~ 193 (451)
.+.+.+|||||..... .+...+..+|.+++++.............+..+. ..+++...+++|++|.
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 4688999999853211 1112356799999988664322223333333332 2356655678999874
No 487
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.77 E-value=0.0085 Score=52.19 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGK 94 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~ 94 (451)
.++++|..|+|||||+++|...+...|.
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~~~g~ 30 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALSARGL 30 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999987665554
No 488
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.73 E-value=0.0078 Score=59.17 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=29.7
Q ss_pred cceeEEEEEcCCCCcHHHHHHHHHHHHHhcCcccee
Q 013007 63 KLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI 98 (451)
Q Consensus 63 ~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~ 98 (451)
...-+++++|++|+|||||..-|++.....|+...+
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i 106 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI 106 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEE
Confidence 345799999999999999999999888777765443
No 489
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.71 E-value=0.0048 Score=62.02 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.4
Q ss_pred CcceeEEEEEcCCCCcHHHHHHHHHHH
Q 013007 62 TKLHVNVGTIGHVDHGKTTLTAAITKV 88 (451)
Q Consensus 62 ~~~~~~I~viG~~~~GKSTLi~~L~~~ 88 (451)
.....+|+|+|+.++|||||+++|...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345679999999999999999999754
No 490
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.69 E-value=0.015 Score=55.32 Aligned_cols=29 Identities=34% Similarity=0.469 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCcc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKA 95 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~ 95 (451)
.|+++|..|+||||+.-.|...+...|+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~k 31 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKK 31 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCe
Confidence 68888999999999999998777766653
No 491
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.69 E-value=0.0085 Score=41.93 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=25.5
Q ss_pred HHHHhccc-CCEEEEEEeCCCCCCccHHHHHHH----HHHc-CCCeEEEEEeecc
Q 013007 144 NMITGAAQ-MDGGILVVSAPDGPMPQTKEHILL----ARQV-GVPSLVCFLNKVD 192 (451)
Q Consensus 144 ~~~~~~~~-~d~~ilVvda~~g~~~~t~~~l~~----~~~~-~ip~iivviNK~D 192 (451)
..+.+++. .+++++++|.++...-...+.+.+ -..+ +.| +++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 34556654 789999999997433233333322 2334 677 789999998
No 492
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=96.68 E-value=0.26 Score=52.41 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHHHHHhcCccce
Q 013007 65 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (451)
Q Consensus 65 ~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (451)
..-|+|+|..|+|||||+.+|...+...|....
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVa 42 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLA 42 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 347899999999999999999999888775443
No 493
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.66 E-value=0.011 Score=48.54 Aligned_cols=32 Identities=34% Similarity=0.493 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCcccee
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAI 98 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~ 98 (451)
+|++.|..|+||||+...|.....+.|+....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~ 32 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLA 32 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 48899999999999999998877666654443
No 494
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.043 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHH
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVL 89 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~ 89 (451)
-.-+++|++|+|||||+|.+.+..
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~ 48 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLT 48 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccC
Confidence 356999999999999999998653
No 495
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.61 E-value=0.013 Score=55.80 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=38.4
Q ss_pred CeeEEEEecCChHHHHHHHHHhcccCCEEEEEEeCCCCCCccHHHHHHHHH----HcCCCeEEEEEeecc
Q 013007 127 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLAR----QVGVPSLVCFLNKVD 192 (451)
Q Consensus 127 ~~~i~iiDtPG~~~~~~~~~~~~~~~d~~ilVvda~~g~~~~t~~~l~~~~----~~~ip~iivviNK~D 192 (451)
++.+.||||||...... +...+..+|.+|+++.+...........+..+. ..+++..-+++|+.|
T Consensus 117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 46799999998542111 233466799999999775432222222332222 345664447899976
No 496
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.59 E-value=0.041 Score=51.93 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=48.3
Q ss_pred CCeeEEEEecCChHH---HHH--HH----HHhcc--cCCEEEEEEeCCCCCCccHHHHHHHHHHcCCCeEEEEEeeccCC
Q 013007 126 AKRHYAHVDCPGHAD---YVK--NM----ITGAA--QMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDLV 194 (451)
Q Consensus 126 ~~~~i~iiDtPG~~~---~~~--~~----~~~~~--~~d~~ilVvda~~g~~~~t~~~l~~~~~~~ip~iivviNK~D~~ 194 (451)
..+.+.++|||.-.. ++. +. ...+. ..+.+++|+....-...++.+.+..+...+++..-+|+||+...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 356799999986322 111 11 11222 24678899988776667888888999999998767899998764
Q ss_pred C
Q 013007 195 E 195 (451)
Q Consensus 195 ~ 195 (451)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 497
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.0027 Score=63.16 Aligned_cols=136 Identities=21% Similarity=0.118 Sum_probs=77.4
Q ss_pred ccCcceeEEEEEcCCCCcHHHHHHHHHHHHHhcCccceeeeeccC-CchhhhhcCceEEe-----eEE------------
Q 013007 60 TRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEID-KAPEEKKRGITIAT-----AHV------------ 121 (451)
Q Consensus 60 ~~~~~~~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d-~~~~e~~~g~t~~~-----~~~------------ 121 (451)
.+.+....|+++|-.|+||||-+-.+.-++.+++....+.+..+- .-..|+-|...... ..+
T Consensus 373 r~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a 452 (587)
T KOG0781|consen 373 RRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAA 452 (587)
T ss_pred HhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChH
Confidence 345567899999999999999999999888877665544332211 11112211111100 000
Q ss_pred --------EeeeCCeeEEEEecCChHH----HHHHHHHh--cccCCEEEEEEeCCCCCC--ccHHHHHHHHHHcCCCeE-
Q 013007 122 --------EYETAKRHYAHVDCPGHAD----YVKNMITG--AAQMDGGILVVSAPDGPM--PQTKEHILLARQVGVPSL- 184 (451)
Q Consensus 122 --------~~~~~~~~i~iiDtPG~~~----~~~~~~~~--~~~~d~~ilVvda~~g~~--~~t~~~l~~~~~~~ip~i- 184 (451)
+....+..+.++||+|... .+...... +...|.+++|=.|--|-. .|...+-..+.....|+.
T Consensus 453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~i 532 (587)
T KOG0781|consen 453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLI 532 (587)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCcccc
Confidence 0122467799999999332 22222222 346899999977655432 344433344444442222
Q ss_pred -EEEEeeccCCC
Q 013007 185 -VCFLNKVDLVE 195 (451)
Q Consensus 185 -ivviNK~D~~~ 195 (451)
-++++|+|.++
T Consensus 533 d~~~ltk~dtv~ 544 (587)
T KOG0781|consen 533 DGILLTKFDTVD 544 (587)
T ss_pred ceEEEEeccchh
Confidence 15799999885
No 498
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.51 E-value=0.017 Score=55.18 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCccc
Q 013007 67 NVGTIGHVDHGKTTLTAAITKVLAEEGKAK 96 (451)
Q Consensus 67 ~I~viG~~~~GKSTLi~~L~~~~~~~g~~~ 96 (451)
.|+++|..|+||||+.-.|...+.+.|+..
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rV 32 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKI 32 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCe
Confidence 577779999999999999987776666543
No 499
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.43 E-value=0.021 Score=49.61 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHhcCccce
Q 013007 66 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA 97 (451)
Q Consensus 66 ~~I~viG~~~~GKSTLi~~L~~~~~~~g~~~~ 97 (451)
.-++++|..|+|||||+.+|...+...|...+
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa 34 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRKLKARGYRVA 34 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHHHHhCCcEEE
Confidence 36899999999999999999988877775443
No 500
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.40 E-value=0.021 Score=60.40 Aligned_cols=76 Identities=18% Similarity=0.205 Sum_probs=61.4
Q ss_pred EEEeeCCCceEEEEEEEeeeeecCCEEEEecccCCCCceeEEEEEeecceeccEEecCCeEEEEeccccc-cCCCCCeEE
Q 013007 272 DVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPSLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKR-EDVQRGQVI 350 (451)
Q Consensus 272 ~~~~~~~~G~v~~g~v~sG~l~~gd~v~i~p~~~~~~~~~~V~~I~~~~~~v~~a~aG~~v~l~l~~~~~-~~i~~G~vl 350 (451)
.+|..+. +.|+..+|..|+|+.|..|. .+.+ ....+|.||+.++++++++..|+-|++.+.+... .++..||+|
T Consensus 475 ~vf~~~~-~~IaGc~V~~G~i~~~~~v~-r~~g---~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i 549 (586)
T PRK04004 475 YVFRQSD-PAIVGVEVLGGTIKPGVPLI-KEDG---KRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDIL 549 (586)
T ss_pred eeEecCC-CeEEEEEEEeCEEecCCEEE-EECC---EEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEE
Confidence 6787665 79999999999999999853 2222 2357899999999999999999999999886522 588999998
Q ss_pred ec
Q 013007 351 AK 352 (451)
Q Consensus 351 ~~ 352 (451)
-.
T Consensus 550 ~~ 551 (586)
T PRK04004 550 YV 551 (586)
T ss_pred EE
Confidence 53
Done!